Citrus Sinensis ID: 038921

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
Protein Sequence
MDEMCGFNSTGDKGSCWENLVFPTSHEYDYSSSPLVYPGRIPTFGSDELLSAAASAISEAAAPISSTPPPHPHPQEIQPPEVEDVSTVIKAKIASHPCYPRLLEAYIDCQKVGAPPEIAYLLDAIRSEKDLYRRDSVPTCFGADPELDEFMETYSDMLAKYKSDLARPFDEATTFLNKVELQLRNLCTTTASVRSLS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHcHHccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHcccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mdemcgfnstgdkgscwenlvfptsheydysssplvypgriptfgsdELLSAAASAISeaaapisstppphphpqeiqppevedVSTVIKAKiashpcyprLLEAYIdcqkvgappeIAYLLDAIRSekdlyrrdsvptcfgadpelDEFMETYSDMLAKYKsdlarpfdeATTFLNKVELQLRNLCTTTASVRSLS
Flexible Loop (DISEMBL)
mdemcgfnstgdkgscWENLVFPTSHEYDYSSSPLVYPGRIPTFGSDELLSAAASAISEAAAPISSTPPPHPHPQEIQPPEVEDVSTVIKAKIASHPCYPRLLEAYIDCQKVGAPPEIAYLLDAIRSEkdlyrrdsvptcfgadpelDEFMETYSDMLAKYKSDLARPFDEATTFLNKVELQlrnlctttasvrsls
Low Complexity Region (SEG)
MDEMCGFNSTGDKGSCWENLVFPTSHEYDYSSSPLVYPGRIPTFGSDELLsaaasaiseaaapisstppphphpqeiqppeVEDVSTVIKAKIASHPCYPRLLEAYIDCQKVGAPPEIAYLLDAIRSEKDLYRRDSVPTCFGADPELDEFMETYSDMLAKYKSDLARPFDEATTFLNKVELQLRNLCTTTASVRSLS
Disordered region (IsUnstruct)
*************GSCWENLVFPTSHEYDYSSSPLVYPGRIPTFG****************************************STVIKAKIASHPCYPRLLEAYIDCQKVGAPPEIAYLLDAIRSEKDLYRRDSVPTCFGADPELDEFMETYSDMLAKYKSDLARPFDEATTFLNKVELQLRNLCTTT*******
Disordered Region (DISOPRED)
**EMCGFNS********************************************************************************KAKIASHPCYPRLLEAYIDCQKVGAPPEIAYLLDA**********************LDEFMETYSDMLAKYKSDLARPFDEATTFLNKVELQLRNL***********
Disordered Region (DISEMBL)
**********GDKGSCWENLVFPTSHEYDYSSSPLVYPGRIPTFGSDELLSAAASAISEAAA***************QPPEVEDVSTVIKAKIASHPCYPRLLEAYIDCQKVGAPPEIAYLLDAIRSEKDLYRRDSVPTCFGADPELDEFMETYSDMLAKYKSDLARPFDEATTFLNKVELQLRNLCTTTASVRSLS
Disordered Region (DISPRO)
*********TGDKGSCWENLVFPTSHEYDYSSSPLVYPGRIPTFGSDELLSAAAS****************************DVSTVIKAKIASHPCYPRLLEAYIDCQKVGAPPEIAYLLDAIRSEKDLYR******CFGADPELDEFMETYSDMLAKYKSDLARPFDEATTFLNKVELQLRNLCT*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDEMCGFNSTGDKGSCWENLVFPTSHEYDYSSSPLVYPGRIPTFGSDELLSAAASAISEAAAPISSTPPPHPHPQEIQPPEVEDVSTVIKAKIASHPCYPRLLEAYIDCQKVGAPPEIAYLLDAIRSEKDLYRRDSVPTCFGADPELDEFMETYSDMLAKYKSDLARPFDEATTFLNKVELQLRNLCTTTASVRSLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	197	2.2.26 [Sep-21-2011]
Q84JS6	327	Homeobox protein knotted-	yes	no	0.944	0.568	0.560	5e-51
P46640	310	Homeobox protein knotted-	no	no	0.893	0.567	0.532	2e-45
Q9FP29	301	Homeobox protein knotted-	yes	no	0.553	0.362	0.513	3e-26
P46609	361	Homeobox protein knotted-	no	no	0.548	0.299	0.504	3e-25
Q43484	364	Homeobox protein KNOX3 OS	N/A	no	0.720	0.390	0.401	9e-25
Q75LX7	337	Homeobox protein knotted-	no	no	0.512	0.299	0.524	4e-23
Q41330	355	Homeotic protein knotted-	N/A	no	0.532	0.295	0.5	7e-23
P46639	398	Homeobox protein knotted-	no	no	0.543	0.268	0.463	2e-22
P46608	379	Homeobox protein SBH1 OS=	no	no	0.548	0.284	0.459	4e-22
P24345	359	Homeotic protein knotted-	N/A	no	0.553	0.303	0.454	6e-22

>sp|Q84JS6|KNAT6_ARATH Homeobox protein knotted-1-like 6 OS=Arabidopsis thaliana GN=KNAT6 PE=1 SV=1

 Score =  200 bits (508), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 115/205 (56%), Positives = 138/205 (67%), Gaps = 19/205 (9%)

Query: 1   MDEMCGFNSTGDKGSCW------ENLVFPTSHEYDYSSSPLVYPGRIP-TFGSDELLSAA 53
           MD M  F+S GD           E+L+FP+ ++    SS      R+   FGSDELLS A
Sbjct: 1   MDGMYNFHSAGDYSDKSVLMMSPESLMFPSDYQALLCSS--AGENRVSDVFGSDELLSVA 58

Query: 54  ASAISEAAAPISSTPPPHPHPQEIQPPEVEDVSTVIKAKIASHPCYPRLLEAYIDCQKVG 113
            SA+S  AA I+          EI+  +     TVIKAKIA HP YPRLL+AYIDCQKVG
Sbjct: 59  VSALSSEAASIAP---------EIRRNDDNVSLTVIKAKIACHPSYPRLLQAYIDCQKVG 109

Query: 114 APPEIAYLLDAIRSEKDLYRRDSVPT-CFGADPELDEFMETYSDMLAKYKSDLARPFDEA 172
           APPEIA LL+ I+ E D+Y+++ VP+ CFGADPELDEFMETY D+L KYKSDLARPFDEA
Sbjct: 110 APPEIACLLEEIQRESDVYKQEVVPSSCFGADPELDEFMETYCDILVKYKSDLARPFDEA 169

Query: 173 TTFLNKVELQLRNLCTTTASVRSLS 197
           T FLNK+E+QLRNLCT   S R +S
Sbjct: 170 TCFLNKIEMQLRNLCTGVESARGVS 194

Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'.
Arabidopsis thaliana (taxid: 3702)

>sp|P46640|KNAT2_ARATH Homeobox protein knotted-1-like 2 OS=Arabidopsis thaliana GN=KNAT2 PE=1 SV=3

 Score =  181 bits (460), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 106/199 (53%), Positives = 127/199 (63%), Gaps = 23/199 (11%)

Query: 1   MDEMCGFNSTGDKGSCWENLVFPTSHEYDYSSSPLVYPG-RIPTFGSDELLSAAASAISE 59
           MD MCGF ST D       L+ P+    DY S      G     FGSDEL    A+A+S 
Sbjct: 1   MDRMCGFRSTEDYSEK-ATLMMPS----DYQSLICSTTGDNQRLFGSDEL----ATALSS 51

Query: 60  AAAPISSTPPPHPHPQEIQPPEVEDVSTVIKAKIASHPCYPRLLEAYIDCQKVGAPPEIA 119
              P             I+  E     +VIK+KIASHP YPRLL+ YIDCQKVGAP EIA
Sbjct: 52  ELLP------------RIRKAEDNFSLSVIKSKIASHPLYPRLLQTYIDCQKVGAPMEIA 99

Query: 120 YLLDAIRSEKDLYRRDSVP-TCFGADPELDEFMETYSDMLAKYKSDLARPFDEATTFLNK 178
            +L+ I+ E  +Y+RD  P +CFGADPELDEFMETY D+L KYK+DLARPFDEATTF+NK
Sbjct: 100 CILEEIQRENHVYKRDVAPLSCFGADPELDEFMETYCDILVKYKTDLARPFDEATTFINK 159

Query: 179 VELQLRNLCTTTASVRSLS 197
           +E+QL+NLCT  AS  +LS
Sbjct: 160 IEMQLQNLCTGPASATALS 178

May play a role in meristem function, and may be involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FP29|KNOS1_ORYSJ Homeobox protein knotted-1-like 1 OS=Oryza sativa subsp. japonica GN=OSH6 PE=2 SV=1

 Score =  118 bits (295), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 56/109 (51%), Positives = 74/109 (67%)

Query: 84  DVSTVIKAKIASHPCYPRLLEAYIDCQKVGAPPEIAYLLDAIRSEKDLYRRDSVPTCFGA 143
           D++ ++KA+IA HP YP LL AYI+C+KVGAPPE+A LL  I  E+            G 
Sbjct: 38  DLTELMKAQIAGHPRYPTLLSAYIECRKVGAPPEVASLLKEIGRERRAGGGGGGAGQIGV 97

Query: 144 DPELDEFMETYSDMLAKYKSDLARPFDEATTFLNKVELQLRNLCTTTAS 192
           DPELDEFME Y  +L +YK +L+RPFDEA +FL+ ++ QL NLC+   S
Sbjct: 98  DPELDEFMEAYCRVLVRYKEELSRPFDEAASFLSSIQTQLSNLCSGATS 146

Probable transcription factor that may be involved in shoot formation during early embryogenesis.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P46609|KNOS6_ORYSJ Homeobox protein knotted-1-like 6 OS=Oryza sativa subsp. japonica GN=OSH1 PE=2 SV=2

 Score =  114 bits (286), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/109 (50%), Positives = 73/109 (66%), Gaps = 1/109 (0%)

Query: 89  IKAKIASHPCYPRLLEAYIDCQKVGAPPEIAYLLDAIRSEKDLYRRDSVPTCFGA-DPEL 147
           IKAKI SHP Y  LL AY+DCQKVGAPPE+A  L A+  + +L +R ++     A +PEL
Sbjct: 104 IKAKIISHPHYSSLLAAYLDCQKVGAPPEVAARLTAVAQDLELRQRTALGVLGAATEPEL 163

Query: 148 DEFMETYSDMLAKYKSDLARPFDEATTFLNKVELQLRNLCTTTASVRSL 196
           D+FME Y +ML KY+ +L RP  EA  FL +VE QL  L  +  S+R++
Sbjct: 164 DQFMEAYHEMLVKYREELTRPLQEAMEFLRRVETQLNTLSISGRSLRNI 212

Probable transcription factor that regulates genes involved in development. May be involved in shoot formation during embryogenesis. Overexpression in transgenic plants causes altered leaf morphology. Probably binds to the DNA sequence 5'-TGAC-3'.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q43484|KNOX3_HORVU Homeobox protein KNOX3 OS=Hordeum vulgare GN=KNOX3 PE=1 SV=1

 Score =  113 bits (282), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 61/152 (40%), Positives = 90/152 (59%), Gaps = 10/152 (6%)

Query: 46  SDELLSAAASAISEAAAPISSTPPPHPHPQEIQPPEVEDVSTVIKAKIASHPCYPRLLEA 105
           S+ +L  A  ++ EA A  +  P    +  +++          IKAKI SHP Y  LL A
Sbjct: 74  SNPVLQLANGSLLEACAKAAKEPSSSSYAADVE---------AIKAKIISHPHYSSLLAA 124

Query: 106 YIDCQKVGAPPEIAYLLDAIRSEKDLYRRDSVPTCFGA-DPELDEFMETYSDMLAKYKSD 164
           Y+DCQKVGAPPE++  L A+  + +L +R ++     A +PELD+FME Y +ML KY+ +
Sbjct: 125 YLDCQKVGAPPEVSARLTAVAQDLELRQRTALGGLGTATEPELDQFMEAYHEMLVKYREE 184

Query: 165 LARPFDEATTFLNKVELQLRNLCTTTASVRSL 196
           L RP  EA  FL +VE QL +L  +  S+R++
Sbjct: 185 LTRPLQEAMEFLRRVETQLNSLSISGRSLRNI 216

May play a role in meristem formation and/or maintenance. Overexpression causes the hooded phenotype characterized by the appearance of an extra flower of inverse polarity on the lemma. Binds to the DNA sequence 5'-TGAC-3'.

Hordeum vulgare (taxid: 4513)

>sp|Q75LX7|KNOS4_ORYSJ Homeobox protein knotted-1-like 4 OS=Oryza sativa subsp. japonica GN=OSH10 PE=2 SV=1

 Score =  107 bits (268), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 53/101 (52%), Positives = 62/101 (61%)

Query: 83  EDVSTVIKAKIASHPCYPRLLEAYIDCQKVGAPPEIAYLLDAIRSEKDLYRRDSVPTCFG 142
           E  +  IKAKI SHP YP LL A+IDCQKVGAPPE+   L A+  E D    D       
Sbjct: 56  ERETDAIKAKIMSHPLYPALLRAFIDCQKVGAPPEVVGRLSALAGELDSRAEDRYLQGQS 115

Query: 143 ADPELDEFMETYSDMLAKYKSDLARPFDEATTFLNKVELQL 183
           +DPELDEFMETY DML  Y+ +L RP  EA  F   +E Q+
Sbjct: 116 SDPELDEFMETYIDMLVSYRQELTRPIQEADQFFRNMEAQI 156

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q41330|KN1_SOLLC Homeotic protein knotted-1 OS=Solanum lycopersicum GN=KN1 PE=2 SV=1

 Score =  107 bits (266), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 68/106 (64%), Gaps = 1/106 (0%)

Query: 84  DVSTVIKAKIASHPCYPRLLEAYIDCQKVGAPPEIAYLLDAIRSEKDLYRRDSVPTC-FG 142
           +V   +KAKI +HP    LL+AY+DCQKVGAPPE+A  L A+R E +  +R S+      
Sbjct: 89  EVIEALKAKIIAHPQCSNLLDAYMDCQKVGAPPEVAARLSAVRQEFEARQRRSLTDRDVS 148

Query: 143 ADPELDEFMETYSDMLAKYKSDLARPFDEATTFLNKVELQLRNLCT 188
            DPELD+FME Y DML KY+ +L RP  EA  F+ K+E QL  L  
Sbjct: 149 KDPELDQFMEAYYDMLVKYREELTRPLQEAMEFMQKIEAQLNMLGN 194

Appears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.

Solanum lycopersicum (taxid: 4081)

>sp|P46639|KNAT1_ARATH Homeobox protein knotted-1-like 1 OS=Arabidopsis thaliana GN=KNAT1 PE=1 SV=1

 Score =  105 bits (262), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/110 (46%), Positives = 72/110 (65%), Gaps = 3/110 (2%)

Query: 82  VEDVSTVIKAKIASHPCYPRLLEAYIDCQKVGAPPEIAYLLDAIRSEKDLYRRDSVPTCF 141
           V DV   +KAKI +HP Y  LL+AY+DCQK+GAPP++   + A R + +  ++ S P+  
Sbjct: 128 VSDVE-AMKAKIIAHPHYSTLLQAYLDCQKIGAPPDVVDRITAARQDFEARQQRSTPSVS 186

Query: 142 GA--DPELDEFMETYSDMLAKYKSDLARPFDEATTFLNKVELQLRNLCTT 189
            +  DPELD+FME Y DML KY+ +L RP  EA  F+ ++E QL  LC +
Sbjct: 187 ASSRDPELDQFMEAYCDMLVKYREELTRPIQEAMEFIRRIESQLSMLCQS 236

May play a role in meristem function, and may be involved in maintaining cells in an undifferentiated, meristematic state, and its expression disappears at the same time the shoot apex undergoes the transition from vegetative to reproductive development. Positive regulator of LATERAL ORGAN BOUNDARIES (LOB). Probably binds to the DNA sequence 5'-TGAC-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|P46608|HSBH1_SOYBN Homeobox protein SBH1 OS=Glycine max GN=H1 PE=2 SV=1

 Score =  104 bits (259), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/111 (45%), Positives = 72/111 (64%), Gaps = 3/111 (2%)

Query: 88  VIKAKIASHPCYPRLLEAYIDCQKVGAPPEI-AYLLDAIRSEKDLYRRDSVP--TCFGAD 144
            +KAKI +HP Y RLL AY++CQKVGAPPE+ A L +A  S   +   D+    +C G D
Sbjct: 123 AVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAATMAGGDAAAGSSCIGED 182

Query: 145 PELDEFMETYSDMLAKYKSDLARPFDEATTFLNKVELQLRNLCTTTASVRS 195
           P LD+FME Y +ML KY+ +L++P  EA  FL ++E Q +NL  +++   S
Sbjct: 183 PALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRIECQFKNLTISSSDFAS 233

Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.

Glycine max (taxid: 3847)

>sp|P24345|KN1_MAIZE Homeotic protein knotted-1 OS=Zea mays GN=KN-1 PE=2 SV=1

 Score =  103 bits (258), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 50/110 (45%), Positives = 71/110 (64%), Gaps = 1/110 (0%)

Query: 88  VIKAKIASHPCYPRLLEAYIDCQKVGAPPEIAYLLDAIRSEKDLYRRDSVPTCFGA-DPE 146
            IKAKI SHP Y  LL AY++C KVGAPPE++  L  I  E +  +R ++     A +PE
Sbjct: 103 AIKAKIISHPHYYSLLTAYLECNKVGAPPEVSARLTEIAQEVEARQRTALGGLAAATEPE 162

Query: 147 LDEFMETYSDMLAKYKSDLARPFDEATTFLNKVELQLRNLCTTTASVRSL 196
           LD+FME Y +ML K++ +L RP  EA  F+ +VE QL +L  +  S+R++
Sbjct: 163 LDQFMEAYHEMLVKFREELTRPLQEAMEFMRRVESQLNSLSISGRSLRNI 212

Possible transcription factor that regulates genes involved in development. Mutations in KN-1 alter leaf development. Foci of cells along the lateral vein do not differentiate properly but continue to divide, forming knots. May participate in the switch from indeterminate to determinate cell fates. Probably binds to the DNA sequence 5'-TGAC-3'.

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
225425603	318	PREDICTED: homeobox protein knotted-1-li	0.923	0.572	0.645	9e-58
255568864	337	homeobox protein knotted-1, putative [Ri	0.959	0.560	0.568	1e-50
42570557	327	homeobox protein knotted-1-like 6 [Arabi	0.944	0.568	0.560	3e-49
224110918	309	predicted protein [Populus trichocarpa]	0.781	0.498	0.594	3e-49
224102455	337	predicted protein [Populus trichocarpa]	0.802	0.468	0.588	2e-48
9295701	324	F26F24.25 [Arabidopsis thaliana] gi|1599	0.857	0.521	0.593	3e-48
8778590	344	F28C11.2 [Arabidopsis thaliana]	0.857	0.491	0.593	3e-48
145336056	329	homeobox protein knotted-1-like 6 [Arabi	0.944	0.565	0.555	8e-48
449435396	316	PREDICTED: homeobox protein knotted-1-li	0.939	0.585	0.621	6e-47
15991302	326	homeodomain transcription factor KNAT6 [	0.857	0.518	0.586	7e-47

>gi|225425603|ref|XP_002263313.1| PREDICTED: homeobox protein knotted-1-like 6 [Vitis vinifera] gi|297739081|emb|CBI28570.3| unnamed protein product [Vitis vinifera]

 Score =  228 bits (581), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 129/200 (64%), Positives = 145/200 (72%), Gaps = 18/200 (9%)

Query: 1   MDEMCGFNSTGDKGSCW----ENLVFPTSHEYDYSSSPLVYPGRIPTFGSDELLSAAASA 56
           M+E+ G NST D         ENL+ P  ++  +SS+      RIP FGS+EL+S A SA
Sbjct: 1   MEEVYGLNSTSDYSDKVLMSPENLILPADYQSFFSSAAAFRDYRIPVFGSNELISVA-SA 59

Query: 57  ISEAAAPISSTPPPHPHPQEIQPPEVEDVSTVIKAKIASHPCYPRLLEAYIDCQKVGAPP 116
           ISE A   S TP       EIQ  E  DVS+VIKAKIASHPCYPRLLEAYIDCQKVGAPP
Sbjct: 60  ISETA---SITP-------EIQREE--DVSSVIKAKIASHPCYPRLLEAYIDCQKVGAPP 107

Query: 117 EIAYLLDAIRSEKDLYRRDSVPTCFGADPELDEFMETYSDMLAKYKSDLARPFDEATTFL 176
           EIA LLD IR E D+ +RD+V TC GADPELDEFMETY DML KYKSDLARPFDEATTFL
Sbjct: 108 EIACLLDEIRRENDVCKRDAVSTCLGADPELDEFMETYCDMLEKYKSDLARPFDEATTFL 167

Query: 177 NKVELQLRNLCTTTASVRSL 196
           NK+E+QL NLC   AS+RSL
Sbjct: 168 NKIEMQLGNLC-NDASIRSL 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568864|ref|XP_002525403.1| homeobox protein knotted-1, putative [Ricinus communis] gi|223535366|gb|EEF37041.1| homeobox protein knotted-1, putative [Ricinus communis]

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 121/213 (56%), Positives = 145/213 (68%), Gaps = 24/213 (11%)

Query: 1   MDEMCGFNST-----GDKGSCW----ENLVFPTSHEYDYSSSPLV----YPGRI-PTFGS 46
           MD M G +S+      DK +      ENL+FP+ + +    S  +    +  RI P   S
Sbjct: 1   MDGMYGLHSSTTTDYSDKTAALMMSPENLMFPSDYHHHQMMSSFITSDAFQNRINPLLVS 60

Query: 47  DELLSAAASAISEAAAPISSTPPPHPHPQEIQPPEVEDVSTVIKAKIASHPCYPRLLEAY 106
           D+LLSAAASAISE  A I+  PP  P     +  + + +ST+IKAKIASHP YPRLL AY
Sbjct: 61  DDLLSAAASAISETTASIA--PPEIP-----RGLDEDSMSTLIKAKIASHPSYPRLLHAY 113

Query: 107 IDCQKVGAPPEIAYLLDAIRSEKDLYRRD--SVPTCFGADPELDEFMETYSDMLAKYKSD 164
           IDCQKVGAPPEIA LLD IR E D+Y+ D  +  TC GADPELDEFMETY D+L KYKSD
Sbjct: 114 IDCQKVGAPPEIAGLLDEIRRENDMYKGDGGAASTCVGADPELDEFMETYCDVLLKYKSD 173

Query: 165 LARPFDEATTFLNKVELQLRNLCTTTASVRSLS 197
           L +PFDEATTFLNK+E+QLRNLC T ASV +LS
Sbjct: 174 LEKPFDEATTFLNKIEMQLRNLC-TGASVSTLS 205

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42570557|ref|NP_850951.2| homeobox protein knotted-1-like 6 [Arabidopsis thaliana] gi|75146711|sp|Q84JS6.1|KNAT6_ARATH RecName: Full=Homeobox protein knotted-1-like 6; AltName: Full=Protein KNAT6 gi|27754596|gb|AAO22744.1| putative homeodomain transcription factor KNAT6 [Arabidopsis thaliana] gi|28393913|gb|AAO42364.1| putative homeodomain transcription factor KNAT6 [Arabidopsis thaliana] gi|332192260|gb|AEE30381.1| homeobox protein knotted-1-like 6 [Arabidopsis thaliana]

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 115/205 (56%), Positives = 138/205 (67%), Gaps = 19/205 (9%)

Query: 1   MDEMCGFNSTGDKGSCW------ENLVFPTSHEYDYSSSPLVYPGRIP-TFGSDELLSAA 53
           MD M  F+S GD           E+L+FP+ ++    SS      R+   FGSDELLS A
Sbjct: 1   MDGMYNFHSAGDYSDKSVLMMSPESLMFPSDYQALLCSS--AGENRVSDVFGSDELLSVA 58

Query: 54  ASAISEAAAPISSTPPPHPHPQEIQPPEVEDVSTVIKAKIASHPCYPRLLEAYIDCQKVG 113
            SA+S  AA I+          EI+  +     TVIKAKIA HP YPRLL+AYIDCQKVG
Sbjct: 59  VSALSSEAASIAP---------EIRRNDDNVSLTVIKAKIACHPSYPRLLQAYIDCQKVG 109

Query: 114 APPEIAYLLDAIRSEKDLYRRDSVPT-CFGADPELDEFMETYSDMLAKYKSDLARPFDEA 172
           APPEIA LL+ I+ E D+Y+++ VP+ CFGADPELDEFMETY D+L KYKSDLARPFDEA
Sbjct: 110 APPEIACLLEEIQRESDVYKQEVVPSSCFGADPELDEFMETYCDILVKYKSDLARPFDEA 169

Query: 173 TTFLNKVELQLRNLCTTTASVRSLS 197
           T FLNK+E+QLRNLCT   S R +S
Sbjct: 170 TCFLNKIEMQLRNLCTGVESARGVS 194

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110918|ref|XP_002315682.1| predicted protein [Populus trichocarpa] gi|222864722|gb|EEF01853.1| predicted protein [Populus trichocarpa]

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 107/180 (59%), Positives = 126/180 (70%), Gaps = 26/180 (14%)

Query: 18  ENLVFPTSHEYDYSSSPLVYPGRIPTFGSDELLSAAASAISEAAAPISSTPPPHPHPQEI 77
           E+L+  + ++   SS  L    RIP  GS+ELLS AAS  +E                  
Sbjct: 23  EDLILQSEYQSLLSSETLRL--RIPILGSEELLSEAASIRTE------------------ 62

Query: 78  QPPEVEDVSTVIKAKIASHPCYPRLLEAYIDCQKVGAPPEIAYLLDAIRSEKDLYRRDSV 137
                ED+S +IKAKIASHPCYPRLLEAYIDCQKVGAPP IA  LD IR E DL+++D+V
Sbjct: 63  -----EDMSALIKAKIASHPCYPRLLEAYIDCQKVGAPPGIACFLDEIRRENDLFKQDAV 117

Query: 138 PTCFGADPELDEFMETYSDMLAKYKSDLARPFDEATTFLNKVELQLRNLCTTTASVRSLS 197
            T +GADPELDEFMETY D+L KYKSDL RPFDEATTFLNK+E+QLRNLC T AS+RS+S
Sbjct: 118 STYWGADPELDEFMETYCDLLVKYKSDLERPFDEATTFLNKIEMQLRNLC-TGASIRSIS 176

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102455|ref|XP_002312684.1| predicted protein [Populus trichocarpa] gi|222852504|gb|EEE90051.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/180 (58%), Positives = 124/180 (68%), Gaps = 22/180 (12%)

Query: 18  ENLVFPTSHEYDYSSSPLVYPGRIPTFGSDELLSAAASAISEAAAPISSTPPPHPHPQEI 77
           ENL+  T  EY    S   +  RIP  GS ELLS AAS  +E                 I
Sbjct: 19  ENLILTT--EYQSLLSSETFRQRIPIQGSQELLSEAASITTE-----------------I 59

Query: 78  QPPEVEDVSTVIKAKIASHPCYPRLLEAYIDCQKVGAPPEIAYLLDAIRSEKDLYRRDSV 137
           Q     D+S+++KAKIASHP YPRLLEAYIDCQKVGAPP+IA  LD IR E DL++ D+V
Sbjct: 60  QREG--DMSSLVKAKIASHPSYPRLLEAYIDCQKVGAPPQIARFLDEIRRENDLFKHDAV 117

Query: 138 PTCFGADPELDEFMETYSDMLAKYKSDLARPFDEATTFLNKVELQLRNLCTTTASVRSLS 197
            T +GADPELDEFMETY D+L KYKSDL RPFDEATTFLNK+E+Q RN+C T AS+RS+S
Sbjct: 118 STYWGADPELDEFMETYCDLLVKYKSDLERPFDEATTFLNKIEMQFRNIC-TAASIRSVS 176

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9295701|gb|AAF87007.1|AC005292_16 F26F24.25 [Arabidopsis thaliana] gi|15991300|dbj|BAB69678.1| homeodomain transcription factor KNAT6 [Arabidopsis thaliana]

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 108/182 (59%), Positives = 130/182 (71%), Gaps = 13/182 (7%)

Query: 18  ENLVFPTSHEYDYSSSPLVYPGRIP-TFGSDELLSAAASAISEAAAPISSTPPPHPHPQE 76
           E+L+FP+ ++    SS      R+   FGSDELLS A SA+S  AA I+          E
Sbjct: 21  ESLMFPSDYQALLCSS--AGENRVSDVFGSDELLSVAVSALSSEAASIAP---------E 69

Query: 77  IQPPEVEDVSTVIKAKIASHPCYPRLLEAYIDCQKVGAPPEIAYLLDAIRSEKDLYRRDS 136
           I+  +     TVIKAKIA HP YPRLL+AYIDCQKVGAPPEIA LL+ I+ E D+Y+++ 
Sbjct: 70  IRRNDDNVSLTVIKAKIACHPSYPRLLQAYIDCQKVGAPPEIACLLEEIQRESDVYKQEV 129

Query: 137 VPT-CFGADPELDEFMETYSDMLAKYKSDLARPFDEATTFLNKVELQLRNLCTTTASVRS 195
           VP+ CFGADPELDEFMETY D+L KYKSDLARPFDEAT FLNK+E+QLRNLCT   S R 
Sbjct: 130 VPSSCFGADPELDEFMETYCDILVKYKSDLARPFDEATCFLNKIEMQLRNLCTGVESARG 189

Query: 196 LS 197
           +S
Sbjct: 190 VS 191

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8778590|gb|AAF79598.1|AC007945_18 F28C11.2 [Arabidopsis thaliana]

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 108/182 (59%), Positives = 130/182 (71%), Gaps = 13/182 (7%)

Query: 18  ENLVFPTSHEYDYSSSPLVYPGRIP-TFGSDELLSAAASAISEAAAPISSTPPPHPHPQE 76
           E+L+FP+ ++    SS      R+   FGSDELLS A SA+S  AA I+          E
Sbjct: 21  ESLMFPSDYQALLCSS--AGENRVSDVFGSDELLSVAVSALSSEAASIAP---------E 69

Query: 77  IQPPEVEDVSTVIKAKIASHPCYPRLLEAYIDCQKVGAPPEIAYLLDAIRSEKDLYRRDS 136
           I+  +     TVIKAKIA HP YPRLL+AYIDCQKVGAPPEIA LL+ I+ E D+Y+++ 
Sbjct: 70  IRRNDDNVSLTVIKAKIACHPSYPRLLQAYIDCQKVGAPPEIACLLEEIQRESDVYKQEV 129

Query: 137 VPT-CFGADPELDEFMETYSDMLAKYKSDLARPFDEATTFLNKVELQLRNLCTTTASVRS 195
           VP+ CFGADPELDEFMETY D+L KYKSDLARPFDEAT FLNK+E+QLRNLCT   S R 
Sbjct: 130 VPSSCFGADPELDEFMETYCDILVKYKSDLARPFDEATCFLNKIEMQLRNLCTGVESARG 189

Query: 196 LS 197
           +S
Sbjct: 190 VS 191

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145336056|ref|NP_173752.3| homeobox protein knotted-1-like 6 [Arabidopsis thaliana] gi|332192259|gb|AEE30380.1| homeobox protein knotted-1-like 6 [Arabidopsis thaliana]

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 115/207 (55%), Positives = 138/207 (66%), Gaps = 21/207 (10%)

Query: 1   MDEMCGFNSTGDKGSCW------ENLVFPTSHEYDYSSSPLVYPGRIP-TFGSDELLSAA 53
           MD M  F+S GD           E+L+FP+ ++    SS      R+   FGSDELLS A
Sbjct: 1   MDGMYNFHSAGDYSDKSVLMMSPESLMFPSDYQALLCSS--AGENRVSDVFGSDELLSVA 58

Query: 54  ASAISEAAAPISSTPPPHPHPQEIQPPEVEDVSTVIKAKIASHPCYPRLLEAYIDCQK-- 111
            SA+S  AA I+          EI+  +     TVIKAKIA HP YPRLL+AYIDCQK  
Sbjct: 59  VSALSSEAASIAP---------EIRRNDDNVSLTVIKAKIACHPSYPRLLQAYIDCQKKQ 109

Query: 112 VGAPPEIAYLLDAIRSEKDLYRRDSVPT-CFGADPELDEFMETYSDMLAKYKSDLARPFD 170
           VGAPPEIA LL+ I+ E D+Y+++ VP+ CFGADPELDEFMETY D+L KYKSDLARPFD
Sbjct: 110 VGAPPEIACLLEEIQRESDVYKQEVVPSSCFGADPELDEFMETYCDILVKYKSDLARPFD 169

Query: 171 EATTFLNKVELQLRNLCTTTASVRSLS 197
           EAT FLNK+E+QLRNLCT   S R +S
Sbjct: 170 EATCFLNKIEMQLRNLCTGVESARGVS 196

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435396|ref|XP_004135481.1| PREDICTED: homeobox protein knotted-1-like 6-like [Cucumis sativus]

 Score =  192 bits (488), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 125/201 (62%), Positives = 140/201 (69%), Gaps = 16/201 (7%)

Query: 1   MDEMCGFNSTG---DKGSCW-ENLVFPTSHEYDYSSSPLVYPGRIPTFGSDELLSAAASA 56
           M+EM G  S+    DK     ENL+ P  ++    SS   +  RIP FGS+ELLSAAASA
Sbjct: 1   MEEMYGLQSSAEYSDKALMSPENLILPPDYQSLLVSSG-EFRDRIPVFGSNELLSAAASA 59

Query: 57  ISEAAAPISSTPPPHPHPQEIQPPEVEDVSTVIKAKIASHPCYPRLLEAYIDCQKVGAPP 116
           ISEA A  S TP       +IQ  E  D+  VIKAKI+SHP YPRLL+AYIDCQKVGAPP
Sbjct: 60  ISEAEAA-SITP-------DIQREE--DMVNVIKAKISSHPTYPRLLDAYIDCQKVGAPP 109

Query: 117 EIAYLLDAIRSEKDLYRRDSVPTCFGADPELDEFMETYSDMLAKYKSDLARPFDEATTFL 176
           EIA+LL+ IR E DL  R +V TC G DPELDEFMETY DML KYKSDL RPFDEATTFL
Sbjct: 110 EIAHLLEGIRQESDLCNRHAVTTCLGVDPELDEFMETYCDMLVKYKSDLKRPFDEATTFL 169

Query: 177 NKVELQLRNLCTTTASVRSLS 197
           NK+ELQL NLC    S RSLS
Sbjct: 170 NKIELQLSNLCNGAFS-RSLS 189

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15991302|dbj|BAB69679.1| homeodomain transcription factor KNAT6 [Arabidopsis thaliana]

 Score =  192 bits (487), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 108/184 (58%), Positives = 130/184 (70%), Gaps = 15/184 (8%)

Query: 18  ENLVFPTSHEYDYSSSPLVYPGRIP-TFGSDELLSAAASAISEAAAPISSTPPPHPHPQE 76
           E+L+FP+ ++    SS      R+   FGSDELLS A SA+S  AA I+          E
Sbjct: 21  ESLMFPSDYQALLCSS--AGENRVSDVFGSDELLSVAVSALSSEAASIAP---------E 69

Query: 77  IQPPEVEDVSTVIKAKIASHPCYPRLLEAYIDCQK--VGAPPEIAYLLDAIRSEKDLYRR 134
           I+  +     TVIKAKIA HP YPRLL+AYIDCQK  VGAPPEIA LL+ I+ E D+Y++
Sbjct: 70  IRRNDDNVSLTVIKAKIACHPSYPRLLQAYIDCQKKQVGAPPEIACLLEEIQRESDVYKQ 129

Query: 135 DSVPT-CFGADPELDEFMETYSDMLAKYKSDLARPFDEATTFLNKVELQLRNLCTTTASV 193
           + VP+ CFGADPELDEFMETY D+L KYKSDLARPFDEAT FLNK+E+QLRNLCT   S 
Sbjct: 130 EVVPSSCFGADPELDEFMETYCDILVKYKSDLARPFDEATCFLNKIEMQLRNLCTGVESA 189

Query: 194 RSLS 197
           R +S
Sbjct: 190 RGVS 193

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
TAIR|locus:2026810	310	KNAT2 "KNOTTED-like from Arabi	0.563	0.358	0.705	3.7e-44
TAIR|locus:2128828	398	KNAT1 "KNOTTED-like from Arabi	0.532	0.263	0.472	1.1e-24
UNIPROTKB|P46609	361	OSH1 "Homeobox protein knotted	0.568	0.310	0.5	8.7e-24
TAIR|locus:2027089	382	STM "SHOOT MERISTEMLESS" [Arab	0.543	0.280	0.481	1.6e-22
TAIR|locus:2015554	291	KNAT7 "KNOTTED-like homeobox o	0.553	0.374	0.275	0.00056

TAIR|locus:2026810 KNAT2 "KNOTTED-like from Arabidopsis thaliana 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 3.7e-44, Sum P(2) = 3.7e-44
 Identities = 79/112 (70%), Positives = 95/112 (84%)

Query:    87 TVIKAKIASHPCYPRLLEAYIDCQKVGAPPEIAYLLDAIRSEKDLYRRDSVP-TCFGADP 145
             +VIK+KIASHP YPRLL+ YIDCQKVGAP EIA +L+ I+ E  +Y+RD  P +CFGADP
Sbjct:    67 SVIKSKIASHPLYPRLLQTYIDCQKVGAPMEIACILEEIQRENHVYKRDVAPLSCFGADP 126

Query:   146 ELDEFMETYSDMLAKYKSDLARPFDEATTFLNKVELQLRNLCTTTASVRSLS 197
             ELDEFMETY D+L KYK+DLARPFDEATTF+NK+E+QL+NLCT  AS  +LS
Sbjct:   127 ELDEFMETYCDILVKYKTDLARPFDEATTFINKIEMQLQNLCTGPASATALS 178

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010094 "specification of carpel identity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009723 "response to ethylene stimulus" evidence=IGI

GO:0009736 "cytokinin mediated signaling pathway" evidence=IMP

GO:0007059 "chromosome segregation" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0032204 "regulation of telomere maintenance" evidence=RCA

GO:0032504 "multicellular organism reproduction" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:2128828 KNAT1 "KNOTTED-like from Arabidopsis thaliana" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
 Identities = 51/108 (47%), Positives = 71/108 (65%)

Query:    82 VEDVSTVIKAKIASHPCYPRLLEAYIDCQKVGAPPEIAYLLDAIRSEKDLYRRDSVPTCF 141
             V DV  + KAKI +HP Y  LL+AY+DCQK+GAPP++   + A R + +  ++ S P+  
Sbjct:   128 VSDVEAM-KAKIIAHPHYSTLLQAYLDCQKIGAPPDVVDRITAARQDFEARQQRSTPSVS 186

Query:   142 GA--DPELDEFMETYSDMLAKYKSDLARPFDEATTFLNKVELQLRNLC 187
              +  DPELD+FME Y DML KY+ +L RP  EA  F+ ++E QL  LC
Sbjct:   187 ASSRDPELDQFMEAYCDMLVKYREELTRPIQEAMEFIRRIESQLSMLC 234

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0045165 "cell fate commitment" evidence=IMP

GO:0010051 "xylem and phloem pattern formation" evidence=RCA;IMP

GO:0007389 "pattern specification process" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048513 "organ development" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0001708 "cell fate specification" evidence=IMP

UNIPROTKB|P46609 OSH1 "Homeobox protein knotted-1-like 6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 57/114 (50%), Positives = 75/114 (65%)

Query:    84 DVSTVIKAKIASHPCYPRLLEAYIDCQKVGAPPEIAYLLDAIRSEKDLYRRDSVPTCFGA 143
             DV   IKAKI SHP Y  LL AY+DCQKVGAPPE+A  L A+  + +L +R ++     A
Sbjct:   100 DVEA-IKAKIISHPHYSSLLAAYLDCQKVGAPPEVAARLTAVAQDLELRQRTALGVLGAA 158

Query:   144 -DPELDEFMETYSDMLAKYKSDLARPFDEATTFLNKVELQLRNLCTTTASVRSL 196
              +PELD+FME Y +ML KY+ +L RP  EA  FL +VE QL  L  +  S+R++
Sbjct:   159 TEPELDQFMEAYHEMLVKYREELTRPLQEAMEFLRRVETQLNTLSISGRSLRNI 212

GO:0003677 "DNA binding" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IMP

GO:0005634 "nucleus" evidence=IGI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IGI

TAIR|locus:2027089 STM "SHOOT MERISTEMLESS" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 52/108 (48%), Positives = 69/108 (63%)

Query:    86 STVIKAKIASHPCYPRLLEAYIDCQKVGAPPEIAYLLDAIRSEKDLYRRDSVPT-CFGAD 144
             S  +KAKI +HP Y RLL AY++CQKVGAPPE+   L+   S          PT C G D
Sbjct:   118 SASVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACSSAAAAAASMGPTGCLGED 177

Query:   145 PELDEFMETYSDMLAKYKSDLARPFDEATTFLNKVELQLRNLCTTTAS 192
             P LD+FME Y +ML KY+ +L++PF EA  FL +VE Q ++L  ++ S
Sbjct:   178 PGLDQFMEAYCEMLVKYEQELSKPFKEAMVFLQRVECQFKSLSLSSPS 225

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0019827 "stem cell maintenance" evidence=TAS

GO:0009934 "regulation of meristem structural organization" evidence=IMP

GO:0009691 "cytokinin biosynthetic process" evidence=TAS

GO:0048440 "carpel development" evidence=RCA;IMP

GO:0007389 "pattern specification process" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0048513 "organ development" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:2015554 KNAT7 "KNOTTED-like homeobox of Arabidopsis thaliana 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 0.00056, P = 0.00056
 Identities = 32/116 (27%), Positives = 53/116 (45%)

Query:    82 VEDVSTVIKAKIASHPCYPRLLEAYIDCQKVGAPPEIAYLLDAIRSEKDLYRRDSVPTCF 141
             V + +  +K +IA+HP Y +LL A++ C +V  P +   +++A  S+     R    T  
Sbjct:    22 VAEQNRQLKGEIATHPMYEQLLAAHVACLRVATPIDQLPIIEAQLSQSHHLLRSYASTAV 81

Query:   142 GADP---ELDEFMETYSDMLAKYKSDLARPFD----EATTFLNKVELQLRNLCTTT 190
             G      ELD F+  Y  +L  +K  L +       EA     ++E  L +L   T
Sbjct:    82 GYHHDRHELDNFLAQYVMVLCSFKEQLQQHVRVHAVEAVMACREIENNLHSLTGAT 137


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.134   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      197       166   0.00097  107 3  11 22  0.40    32
                                                     30  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  597 (63 KB)
  Total size of DFA:  156 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.21u 0.08s 14.29t   Elapsed:  00:00:06
  Total cpu time:  14.22u 0.08s 14.30t   Elapsed:  00:00:06
  Start:  Fri May 10 01:01:15 2013   End:  Fri May 10 01:01:21 2013

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010089 "xylem development" evidence=RCA;IMP

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0007155 "cell adhesion" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0048513 "organ development" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	197
pfam03791	52	pfam03791, KNOX2, KNOX2 domain	5e-25
pfam03790	45	pfam03790, KNOX1, KNOX1 domain	2e-20

>gnl|CDD|112597 pfam03791, KNOX2, KNOX2 domain

 Score = 91.5 bits (228), Expect = 5e-25
 Identities = 34/48 (70%), Positives = 41/48 (85%)

Query: 140 CFGADPELDEFMETYSDMLAKYKSDLARPFDEATTFLNKVELQLRNLC 187
           C GADPELD+FME Y D+L KYK +L+RPFDEA TFLN++E QL+NLC
Sbjct: 4   CIGADPELDQFMEAYCDVLVKYKEELSRPFDEAMTFLNEIETQLQNLC 51

The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerisation. Length = 52

>gnl|CDD|112596 pfam03790, KNOX1, KNOX1 domain

 Score = 79.6 bits (197), Expect = 2e-20
 Identities = 32/44 (72%), Positives = 34/44 (77%)

Query: 88  VIKAKIASHPCYPRLLEAYIDCQKVGAPPEIAYLLDAIRSEKDL 131
            IKAKIASHP YPRLL AYIDCQKVGAPPE+A  L+ IR E   
Sbjct: 2   AIKAKIASHPLYPRLLAAYIDCQKVGAPPEVAARLEEIRRENQA 45

The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerisation. Length = 45

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	197
PF03791	52	KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEIN	99.95
PF03790	45	KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEIN	99.89
KOG0773	342	consensus Transcription factor MEIS1 and related H	98.32

>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2

Probab=99.95  E-value=1e-28  Score=171.48  Aligned_cols=51  Identities=55%  Similarity=0.935  Sum_probs=49.3

Q ss_pred             CCCCCCCChhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhc
Q 038921          138 PTCFGADPELDEFMETYSDMLAKYKSDLARPFDEATTFLNKVELQLRNLCT  188 (197)
Q Consensus       138 ~~~~g~DPELDqFMeaYc~mL~kykEEL~rPf~EA~~F~~~iE~QL~~L~~  188 (197)
                      ++++|+|||||||||+||.||+||||||+|||+||++|||+||+||++|||
T Consensus         2 ~~~~~~dpELDqFMeaYc~~L~kykeeL~~p~~EA~~f~~~ie~qL~~Lt~   52 (52)
T PF03791_consen    2 SSSIGADPELDQFMEAYCDMLVKYKEELQRPFQEAMEFCREIEQQLSSLTG   52 (52)
T ss_pred             CCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            567899999999999999999999999999999999999999999999996

KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus

>PF03790 KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEINOX region is comprised of two domains, KNOX1 and KNOX2

Probab=99.89  E-value=4.5e-24  Score=144.49  Aligned_cols=44  Identities=70%  Similarity=1.090  Sum_probs=41.5

Q ss_pred             HHHHHHHhhCCChHHHHHHHHhccccCCchhhHhHHHHHHhhhh
Q 038921           87 TVIKAKIASHPCYPRLLEAYIDCQKVGAPPEIAYLLDAIRSEKD  130 (197)
Q Consensus        87 ~~iKAkI~sHPlYp~LL~AyidC~KVGAPpev~~~Ldei~~~~~  130 (197)
                      +.|||||++||+||+||+|||+|||||||||++++||++.++++
T Consensus         1 e~iKA~I~~HP~Y~~Ll~Ayi~C~KVGAP~e~~~~L~e~~~~~~   44 (45)
T PF03790_consen    1 EAIKAKIASHPLYPRLLAAYIDCQKVGAPPEVVARLDEILAESQ   44 (45)
T ss_pred             ChHHHHHHcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence            36999999999999999999999999999999999999998764

KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus

>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]

Probab=98.32  E-value=1.9e-07  Score=83.08  Aligned_cols=105  Identities=15%  Similarity=0.099  Sum_probs=86.9

Q ss_pred             HHHHHHHhhCCChHHHHHHHHhccccCCchhhHhHHHHHHhhhhhh--cc-CCC-----CCCCCCCChhhhHHHHHHHHH
Q 038921           87 TVIKAKIASHPCYPRLLEAYIDCQKVGAPPEIAYLLDAIRSEKDLY--RR-DSV-----PTCFGADPELDEFMETYSDML  158 (197)
Q Consensus        87 ~~iKAkI~sHPlYp~LL~AyidC~KVGAPpev~~~Ldei~~~~~~~--~~-~~~-----~~~~g~DPELDqFMeaYc~mL  158 (197)
                      ..+|+.+.+||+|..++.||++|++++.+.+.+.+.++..+.....  ++ +++     ....+.+++|+.||..|+.+|
T Consensus        50 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~s~~~~~~~~~~~~~~~~~k~~~~l  129 (342)
T KOG0773|consen   50 ASSKYLTAAQELLDEFCSAGLDCLKGKMPYDPVPRSPASLSPPEDKGARRGNATRESATLKAWLEEHRLNPYPSKLEKIL  129 (342)
T ss_pred             ccccccccchhHHhHHhhccccccccccCcCccccccccccCccccccccccccccccccccchhhhhhccCchHHHHHH
Confidence            3589999999999999999999999999999998877665544321  11 111     124568999999999999999


Q ss_pred             HHHHHHhhchH--HHHHHHHHHHHHHHHHhhcCCC
Q 038921          159 AKYKSDLARPF--DEATTFLNKVELQLRNLCTTTA  191 (197)
Q Consensus       159 ~kykEEL~rPf--~EA~~F~~~iE~QL~~L~~~~~  191 (197)
                      ..++..|+..+  ++++.+.++++..+...++.+.
T Consensus       130 l~~~~~~~~~~~~~~~~~a~r~~~~~~~~~~~~~~  164 (342)
T KOG0773|consen  130 LAVITKLTLTQVSTWFANARRRLKKELKMTWGPTP  164 (342)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHhccCCCCCCcc
Confidence            99999999998  7999999999999999887653

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	197
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	5e-04

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 38.6 bits (89), Expect = 5e-04
 Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 14/80 (17%)

Query: 112 VGAPPEIAYLLDAIRS-----EKDLYRRDSV------PTCFGADPELDEFMETYSDMLAK 160
           +     +    ++IR       K L   D+            A  +L+E+ +  S+ + K
Sbjct: 74  IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133

Query: 161 YKSDLARPFDEATTFLNKVE 180
            K +  R  D+A  F  + +
Sbjct: 134 NKIN-NRIADKA--FYQQPD 150

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00