Citrus Sinensis ID: 038923

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Protein Sequence
MDERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV
Secondary Structure (PSIPRED)
ccHHHHHHHHcccHHHHHHHHHccHHHHHcccccccccHHHHHHHHccHHHHHHHHHcccHHHccccccccccccHHHHHHcccccccHHHHHHHHccHHHHHHHHccccccHHccccccccHHHHHHHHccHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccHHHHHHHHHccHHHHHHccccccccHHHHHHHHcHHHHHHHHHHHcHHHHHcHcccccccccHHHHHHHccccccHHHHHHHcccHHHHHHHHHccHHHHEEcccccccHHHHHHHcccHHHHHHHc
Coil and Loop (DISEMBL)
MDERLFETILkgdvpnflnlvhedeaiikqtvpgssntILHLASRYEHEELALEILKLCPemlaapndkfetptdsWVVHMMNRNKESALYVAYERGRHDVVKQLlnypsvsllemddglTTSLHVAASaghlgtfanlv
Flexible Loop (DISEMBL)
MDERLFETilkgdvpnflNLVHEDEAIikqtvpgssNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV
Low Complexity Region (SEG)
MDERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV
Disordered region (IsUnstruct)
****LFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTF****
Disordered Region (DISOPRED)
MDERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV
Disordered Region (DISEMBL)
MDERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV
Disordered Region (DISPRO)
*DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	140	2.2.26 [Sep-21-2011]
Q92625	1134	Ankyrin repeat and SAM do	yes	no	0.714	0.088	0.354	0.0006
Q94B55	456	Putative E3 ubiquitin-pro	no	no	0.792	0.243	0.257	0.0007

>sp|Q92625|ANS1A_HUMAN Ankyrin repeat and SAM domain-containing protein 1A OS=Homo sapiens GN=ANKS1A PE=1 SV=4

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 62/127 (48%), Gaps = 27/127 (21%)

Query: 11  KGDVPNFLNLVHEDEAIIKQTVPGSSN-TILHLASRYEHEELALEILKLCPEMLAAP--- 66
           KGD      L+H+  +  +     + N T LH A++Y H     E++K+  E L  P   
Sbjct: 123 KGDAQIVRLLIHQGPSHTRVNEQNNDNETALHCAAQYGH----TEVVKVLLEELTDPTMR 178

Query: 67  NDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLN-YPSVSLLEMDDGLTTSLH 125
           N+KFETP D            +ALY     GR +VVK LLN +P  +LL  +    T LH
Sbjct: 179 NNKFETPLDL-----------AALY-----GRLEVVKMLLNAHP--NLLSCNTKKHTPLH 220

Query: 126 VAASAGH 132
           +AA  GH
Sbjct: 221 LAARNGH 227

Regulator of different signaling pathways. Regulates EPHA8 receptor tyrosine kinase signaling to control cell migration and neurite retraction.
Homo sapiens (taxid: 9606)

>sp|Q94B55|XB31_ARATH Putative E3 ubiquitin-protein ligase XBAT31 OS=Arabidopsis thaliana GN=XBAT31 PE=2 SV=1

 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 17/128 (13%)

Query: 5   LFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLA 64
           +F ++  GD+     ++  + +++ QT P   +++LH+A+        +EIL L  E   
Sbjct: 15  IFASVQCGDIITIRRVMATEPSLLNQTTPYDRHSVLHVAAANGQ----IEILSLLLERFT 70

Query: 65  APNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSL 124
            P+             ++NR+K++ L +A   GR   VK+L    +  L+       T L
Sbjct: 71  NPD-------------LLNRHKQTPLMLAAMYGRISCVKKLAEVGANILMFDSVNRRTCL 117

Query: 125 HVAASAGH 132
           H AA  GH
Sbjct: 118 HYAAYYGH 125

No E3 ubiquitin-protein ligase activity observed when associated with the E2 enzyme UBC8 in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
296081888	600	unnamed protein product [Vitis vinifera]	0.935	0.218	0.56	3e-34
225430027	595	PREDICTED: ankyrin repeat-containing pro	0.935	0.220	0.56	3e-34
224142976	591	predicted protein [Populus trichocarpa]	0.935	0.221	0.513	3e-33
296081857	470	unnamed protein product [Vitis vinifera]	0.95	0.282	0.516	3e-32
359476356	601	PREDICTED: ankyrin repeat-containing pro	0.935	0.217	0.516	1e-31
147765315	580	hypothetical protein VITISV_020094 [Viti	0.935	0.225	0.516	2e-31
147765317	251	hypothetical protein VITISV_020096 [Viti	0.935	0.521	0.540	7e-30
225429952	171	PREDICTED: ankyrin repeat-containing pro	0.95	0.777	0.496	3e-29
147812174	574	hypothetical protein VITISV_033967 [Viti	0.928	0.226	0.562	7e-29
255550978	595	ankyrin repeat-containing protein, putat	0.964	0.226	0.484	8e-28

>gi|296081888|emb|CBI20893.3| unnamed protein product [Vitis vinifera]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 84/150 (56%), Positives = 100/150 (66%), Gaps = 19/150 (12%)

Query: 1   MDERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCP 60
           MDERL E +LKGDV  FL LV EDE I+KQ VP SS+TILHLA+R  H ELA EILKL P
Sbjct: 1   MDERLHEAVLKGDVSAFLVLVQEDEDILKQVVPRSSSTILHLAARLGHPELAAEILKLSP 60

Query: 61  EMLAAPNDKFETP------------------TDSWVVHMMNRNKESALYVAYERGRHDVV 102
           E+ AA N+K +TP                  TD  +   +NR+ E+ALYV  +RGR DVV
Sbjct: 61  ELAAARNEKLDTPLHEACREGRAEIVKLLLETDPLIAGKVNRDNETALYVGCDRGRLDVV 120

Query: 103 KQLLNYPSVSLLEMDDGLTTSLHVAASAGH 132
           KQLLN+P +  LE+ DG TTSLH+AAS GH
Sbjct: 121 KQLLNHPWLLALEL-DGFTTSLHLAASRGH 149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430027|ref|XP_002281561.1| PREDICTED: ankyrin repeat-containing protein At3g12360 [Vitis vinifera]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 84/150 (56%), Positives = 100/150 (66%), Gaps = 19/150 (12%)

Query: 1   MDERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCP 60
           MDERL E +LKGDV  FL LV EDE I+KQ VP SS+TILHLA+R  H ELA EILKL P
Sbjct: 1   MDERLHEAVLKGDVSAFLVLVQEDEDILKQVVPRSSSTILHLAARLGHPELAAEILKLSP 60

Query: 61  EMLAAPNDKFETP------------------TDSWVVHMMNRNKESALYVAYERGRHDVV 102
           E+ AA N+K +TP                  TD  +   +NR+ E+ALYV  +RGR DVV
Sbjct: 61  ELAAARNEKLDTPLHEACREGRAEIVKLLLETDPLIAGKVNRDNETALYVGCDRGRLDVV 120

Query: 103 KQLLNYPSVSLLEMDDGLTTSLHVAASAGH 132
           KQLLN+P +  LE+ DG TTSLH+AAS GH
Sbjct: 121 KQLLNHPWLLALEL-DGFTTSLHLAASRGH 149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142976|ref|XP_002324803.1| predicted protein [Populus trichocarpa] gi|222866237|gb|EEF03368.1| predicted protein [Populus trichocarpa]

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/150 (51%), Positives = 99/150 (66%), Gaps = 19/150 (12%)

Query: 1   MDERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCP 60
           MD RL E ILKG+VP FL L+ EDE II QT+PGSS+ ILH+ SR+ H ELA EI++L P
Sbjct: 1   MDRRLREAILKGEVPAFLTLIQEDEHIIDQTIPGSSSNILHIVSRFGHVELAKEIVRLRP 60

Query: 61  EMLAAPNDKFETP------------------TDSWVVHMMNRNKESALYVAYERGRHDVV 102
           E++   N+K ETP                  TD W+V+ +N++  SAL VA ERG+ DVV
Sbjct: 61  ELMFEENEKMETPLHEACREGKMEMVRLLVETDPWLVYKVNQDNGSALTVACERGKLDVV 120

Query: 103 KQLLNYPSVSLLEMDDGLTTSLHVAASAGH 132
             LL++P + +LE+ DG TTSLH AAS GH
Sbjct: 121 DYLLSFPGLLMLEL-DGFTTSLHAAASGGH 149

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081857|emb|CBI20862.3| unnamed protein product [Vitis vinifera]

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 79/153 (51%), Positives = 98/153 (64%), Gaps = 20/153 (13%)

Query: 1   MDERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCP 60
           MD RLFE +LKGDV +FL+L  E+E IIKQ VPGS NT+LHLA+R+ H ELA EI+ L P
Sbjct: 1   MDRRLFEAVLKGDVSSFLSLAQEEEDIIKQVVPGSLNTVLHLAARFGHLELASEIVNLRP 60

Query: 61  EMLAAPNDKFETP------------------TDSWVVHMMNRNKESALYVAYERGRHDVV 102
           E+ +A N+K ETP                   D W+   +NRN ES L+V  ERG+ DVV
Sbjct: 61  ELSSAENEKLETPLHEACREGRVEIVALLMKVDQWIAPKVNRNDESVLFVGCERGKLDVV 120

Query: 103 KQLL-NYPSVSLLEMDDGLTTSLHVAASAGHLG 134
           K LL N+  + +LE+ D  TTSLH AAS GH G
Sbjct: 121 KHLLVNHSWLLMLEL-DAPTTSLHAAASGGHTG 152

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476356|ref|XP_003631824.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/151 (51%), Positives = 97/151 (64%), Gaps = 20/151 (13%)

Query: 1   MDERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCP 60
           MD RLFE +LKGDV +FL+L  E+E IIKQ VPGS NT+LHLA+R+ H ELA EI+ L P
Sbjct: 1   MDRRLFEAVLKGDVSSFLSLAQEEEDIIKQVVPGSLNTVLHLAARFGHLELASEIVNLRP 60

Query: 61  EMLAAPNDKFETP------------------TDSWVVHMMNRNKESALYVAYERGRHDVV 102
           E+ +A N+K ETP                   D W+   +NRN ES L+V  ERG+ DVV
Sbjct: 61  ELSSAENEKLETPLHEACREGRVEIVALLMKVDQWIAPKVNRNDESVLFVGCERGKLDVV 120

Query: 103 KQLL-NYPSVSLLEMDDGLTTSLHVAASAGH 132
           K LL N+  + +LE+ D  TTSLH AAS GH
Sbjct: 121 KHLLVNHSWLLMLEL-DAPTTSLHAAASGGH 150

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147765315|emb|CAN66947.1| hypothetical protein VITISV_020094 [Vitis vinifera]

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/151 (51%), Positives = 97/151 (64%), Gaps = 20/151 (13%)

Query: 1   MDERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCP 60
           MD RLFE +LKGDV +FL+L  E+E IIKQ VPGS NT+LHLA+R+ H ELA EI+ L P
Sbjct: 1   MDRRLFEAVLKGDVSSFLSLAQEEEDIIKQVVPGSLNTVLHLAARFGHLELASEIVNLRP 60

Query: 61  EMLAAPNDKFETP------------------TDSWVVHMMNRNKESALYVAYERGRHDVV 102
           E+ +A N+K ETP                   D W+   +NRN ES L+V  ERG+ DVV
Sbjct: 61  ELSSAENEKLETPLHEACREGRVEIVALLMKVDPWIAPKVNRNDESVLFVGCERGKLDVV 120

Query: 103 KQLL-NYPSVSLLEMDDGLTTSLHVAASAGH 132
           K LL N+  + +LE+ D  TTSLH AAS GH
Sbjct: 121 KHLLVNHSWLLMLEL-DAPTTSLHAAASGGH 150

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147765317|emb|CAN66949.1| hypothetical protein VITISV_020096 [Vitis vinifera]

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 74/137 (54%), Positives = 92/137 (67%), Gaps = 6/137 (4%)

Query: 1   MDERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCP 60
           MD RL E +LKGDV  FL+L  E+E IIKQ V GS NT+LH A+R+ H ELA EI+ L P
Sbjct: 1   MDRRLVEAVLKGDVSTFLSLDQEEEDIIKQVVSGSLNTVLHFAARFRHLELASEIVNLRP 60

Query: 61  EMLAAPNDKFETP----TDSWVVHMMNRNKESALYVAYERGRHDVVKQLL-NYPSVSLLE 115
           E+ +A N+K ETP     D W+   +NRN ES L+V  ERG+ DVVK LL N+  + +LE
Sbjct: 61  ELASAENEKLETPLHDVVDPWIAPKVNRNDESVLFVGCERGKLDVVKHLLVNHSWLLMLE 120

Query: 116 MDDGLTTSLHVAASAGH 132
           + D  T SLH AAS GH
Sbjct: 121 L-DAPTISLHAAASGGH 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429952|ref|XP_002283934.1| PREDICTED: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera]

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/153 (49%), Positives = 94/153 (61%), Gaps = 20/153 (13%)

Query: 1   MDERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCP 60
           MD RL E +LKGDV  FL+L  E+E IIKQ V GS NT+LHLA+R+ H ELA EI+ L P
Sbjct: 1   MDRRLVEAVLKGDVSTFLSLAQEEEDIIKQVVSGSLNTVLHLAARFGHLELASEIVNLRP 60

Query: 61  EMLAAPNDKFETP------------------TDSWVVHMMNRNKESALYVAYERGRHDVV 102
           E+ +A N+K ETP                   D W+   +NRN ES L+V  ERG+ DVV
Sbjct: 61  ELASAENEKLETPLHEACREGRVEIVALLMEVDPWIAPKVNRNDESVLFVGCERGKLDVV 120

Query: 103 KQLL-NYPSVSLLEMDDGLTTSLHVAASAGHLG 134
           K LL N+  + +LE+ D  T SLH AAS GH G
Sbjct: 121 KHLLVNHSWLLMLEL-DAPTISLHAAASGGHTG 152

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147812174|emb|CAN61518.1| hypothetical protein VITISV_033967 [Vitis vinifera]

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 76/135 (56%), Positives = 91/135 (67%), Gaps = 5/135 (3%)

Query: 1   MDERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCP 60
           MDERL E +LKGDV  FL LV E E I+KQ VP SS+TILHLA+R  H ELA EILK   
Sbjct: 1   MDERLHEAVLKGDVSAFLVLVQEXEDILKQVVPRSSSTILHLAARLGHXELAAEILKEGR 60

Query: 61  EMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGL 120
             +     K    TD  +   +NR+ E+ALYV  +RGR DVVKQLLN+P +  LE+ DG 
Sbjct: 61  AEIV----KLLLETDPLIAGKVNRDNETALYVGCDRGRLDVVKQLLNHPWLLALEL-DGF 115

Query: 121 TTSLHVAASAGHLGT 135
           TTSLH+AAS GH G+
Sbjct: 116 TTSLHLAASRGHTGS 130

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550978|ref|XP_002516537.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223544357|gb|EEF45878.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 77/159 (48%), Positives = 100/159 (62%), Gaps = 24/159 (15%)

Query: 1   MDERLFETILKGDVPNFLNLVHEDEAIIKQTVP-GSSNTILHLASRYEHEELALEILKLC 59
           MD RL ETILKGDVP FL+L+ E+E I+ Q VP GS NTILHLA+R  H  LA EI+KL 
Sbjct: 1   MDHRLQETILKGDVPTFLSLIQENEDIMSQEVPSGSRNTILHLAARLGHLNLAEEIVKLR 60

Query: 60  PEMLAAPNDKFETP------------------TDSWVVHMMNRNKESALYVAYERGRHDV 101
           PEM++  N K ETP                  +D WV++ +N+  E+AL+VA +RG+ +V
Sbjct: 61  PEMVSEVNKKMETPLHEACRQGKMELVKLLVESDPWVLYKLNQENENALFVACQRGKVEV 120

Query: 102 VKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV 140
           V  LLN+  +   E+ DG  TSLHVAA    LG +A +V
Sbjct: 121 VNYLLNFQWLLTSEV-DGYATSLHVAA----LGGYAEIV 154

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
TAIR|locus:2012873	578	AT1G10340 "AT1G10340" [Arabido	0.492	0.119	0.352	2.3e-10
TAIR|locus:2046628	601	AT2G24600 "AT2G24600" [Arabido	0.492	0.114	0.352	1.1e-09
TAIR|locus:2009046	573	AT1G34050 "AT1G34050" [Arabido	0.492	0.120	0.309	5.5e-06
TAIR|locus:2157548	480	AT5G54700 "AT5G54700" [Arabido	0.664	0.193	0.255	3.4e-05
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.75	0.172	0.306	7.7e-05
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.75	0.177	0.297	9.5e-05
ASPGD|ASPL0000032707	1198	AN8304 [Emericella nidulans (t	0.857	0.100	0.278	0.00011

TAIR|locus:2012873 AT1G10340 "AT1G10340" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
 Identities = 25/71 (35%), Positives = 45/71 (63%)

Query:     5 LFETILKGDVPNFLNLVHEDEAIIKQTVPGS--SNTILHLASRYEHEELALEILKLCPEM 62
             +F  ILK D+P FL LV + E+ +++       +NT+LH+A+++ H EL  +I++L P +
Sbjct:     4 IFHAILKNDLPAFLELVEDSESSLEERNEEEHLNNTVLHMAAKFGHRELVSKIIELRPSL 63

Query:    63 LAAPNDKFETP 73
             +++ N    TP
Sbjct:    64 VSSRNAYRNTP 74

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2046628 AT2G24600 "AT2G24600" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 25/71 (35%), Positives = 46/71 (64%)

Query:     5 LFETILKGDVPNFLNLVHEDEAIIKQTVP--GSSNTILHLASRYEHEELALEILKLCPEM 62
             +F+ IL+ D+P FL LV   E+ +++      ++NT+LH+A++  H EL  +I++L P +
Sbjct:     4 IFDAILQNDLPAFLGLVEARESSLEERSEEQNTNNTVLHVAAKLGHRELVAKIIELRPSL 63

Query:    63 LAAPNDKFETP 73
             L++ N   +TP
Sbjct:    64 LSSRNAYGDTP 74

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009046 AT1G34050 "AT1G34050" [Arabidopsis thaliana (taxid:3702)]

 Score = 102 (41.0 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
 Identities = 22/71 (30%), Positives = 38/71 (53%)

Query:     5 LFETILKGDVPNFLNLVHEDEAIIKQTVPGSS--NTILHLASRYEHEELALEILKLCPEM 62
             + + IL  DV   L L   + +++++     S   T+LHLA+   H+E+   I+KLCP +
Sbjct:    21 IIDAILANDVSTLLALAEGNLSVLRERYHWDSLGGTVLHLATELGHKEIVEAIIKLCPSL 80

Query:    63 LAAPNDKFETP 73
             +   N   +TP
Sbjct:    81 VGVTNLDGDTP 91

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2157548 AT5G54700 "AT5G54700" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 3.4e-05, P = 3.4e-05
 Identities = 24/94 (25%), Positives = 46/94 (48%)

Query:     1 MDERLFETILKGDVPNFLNLVHEDEAIIKQT-VPGSSNTILHLASRYEHEELALEILKLC 59
             M   +F  I K D   F  L+ E  ++I++     +  ++LHL ++  H+E A  I+ +C
Sbjct:     1 MTPPIFNAIRKNDEATFNQLIQEKPSVIEERDKENNGESVLHLVTKIGHQEFAKTIIGIC 60

Query:    60 PEMLAAPNDKFETPTDSWVVHMMNRNKESALYVA 93
             P +    +D  E   D  +  ++N +  + L+ A
Sbjct:    61 PSLSTPLDDISEVENDLKLAELVNNDGLTPLHCA 94

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 7.7e-05, P = 7.7e-05
 Identities = 34/111 (30%), Positives = 57/111 (51%)

Query:    28 IKQTVPGSSNTILHLASRYEHEELALEIL-----KLCPEMLAAPNDKFETPTDSWVVHMM 82
             +KQ     ++T LHLA++        +IL     ++   +  A  D       + VV+ +
Sbjct:    80 VKQVTGRHNDTELHLAAQRGDLASVKQILSDIDSQITGTITGADFDDEVAQIMTSVVNEV 139

Query:    83 NRNKESALYVAYERGRHDVVKQLLNYPSV-SLLEMDDGLTTSLHVAASAGH 132
             N   E+ L+ A E+G  DVVK+LL Y ++ SL++ +     +LH+A S GH
Sbjct:   140 NELGETPLFTAAEKGNIDVVKELLPYTTIESLMQKNLSGFDALHIACSQGH 190

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 9.5e-05, P = 9.5e-05
 Identities = 33/111 (29%), Positives = 56/111 (50%)

Query:    28 IKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAA--PNDKFETPTD---SWVVHMM 82
             +KQ     ++T LHLA++        +ILK     +      ++F+       + +V+ +
Sbjct:    66 VKQVTGRHNDTELHLAAQRGDLAAVQQILKDINSQMEGILSGEEFDAEVAEIRASIVNEV 125

Query:    83 NRNKESALYVAYERGRHDVVKQLLNYPS-VSLLEMDDGLTTSLHVAASAGH 132
             N   E+AL+ A ++G  DVVK+LL Y S  S+ + +      LH+AA  GH
Sbjct:   126 NELGETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGH 176

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

ASPGD|ASPL0000032707 AN8304 [Emericella nidulans (taxid:162425)]

 Score = 107 (42.7 bits), Expect = 0.00011, P = 0.00011
 Identities = 37/133 (27%), Positives = 67/133 (50%)

Query:     3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEM 62
             +R    I KGD    L  + +   I++Q   G++ T+LH A+   H + AL +L    + 
Sbjct:   714 QRARRGIQKGDASYLLETLEQHPTIVRQISDGANKTLLHYAAESGHVD-ALNMLLTAIDR 772

Query:    63 LAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPS-VSLLEMDDGLT 121
             LA+  +         V+ + +    +AL +A  +G  D+V+ L+   + V+L++ D    
Sbjct:   773 LASTQE---------VIDIRSALGATALMLAVGQGSQDIVEILVERKANVNLVDND--YR 821

Query:   122 TSLHVAASAGHLG 134
             T+L +AA AG+ G
Sbjct:   822 TALDIAAHAGYDG 834


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.382    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      140       140   0.00091  102 3  11 22  0.45    31
                                                     30  0.46    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  577 (61 KB)
  Total size of DFA:  136 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.56u 0.11s 15.67t   Elapsed:  00:00:01
  Total cpu time:  15.56u 0.11s 15.67t   Elapsed:  00:00:01
  Start:  Fri May 10 01:03:40 2013   End:  Fri May 10 01:03:41 2013

GO:0008150 "biological_process" evidence=ND

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	140
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-07
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-04
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	0.002

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 47.0 bits (112), Expect = 1e-07
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 18/97 (18%)

Query: 37  NTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYER 96
            T LHLA++  H E+   +L+                     V+  +++  + L++A   
Sbjct: 41  RTPLHLAAKNGHLEIVKLLLEKGA-----------------DVNARDKDGNTPLHLAARN 83

Query: 97  GRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
           G  DVVK LL + +       DG  T LH+AA  GHL
Sbjct: 84  GNLDVVKLLLKHGADVNARDKDGR-TPLHLAAKNGHL 119

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 45.5 bits (108), Expect = 4e-07
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 18/97 (18%)

Query: 37  NTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYER 96
            T LHLA+   H E+   +L+                     V+  + +  + L++A + 
Sbjct: 8   RTPLHLAASNGHLEVVKLLLENGA-----------------DVNAKDNDGRTPLHLAAKN 50

Query: 97  GRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
           G  ++VK LL   +       DG  T LH+AA  G+L
Sbjct: 51  GHLEIVKLLLEKGADVNARDKDGN-TPLHLAARNGNL 86

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 20/94 (21%)

Query: 40  LHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRH 99
           LHLA++  + EL   +L+   ++                      + ++AL++A   G  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNL-------------------GDTDTALHLAARNGNL 41

Query: 100 DVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
           ++VK LL +    +   D    T+LH+AA  G+L
Sbjct: 42  EIVKLLLEH-GADVNAKDKDGNTALHLAARNGNL 74

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 83  NRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
           + +  + L++A   G  +VVK LL   +    + +DG  T LH+AA  GHL
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGR-TPLHLAAKNGHL 53

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 34.9 bits (81), Expect = 0.002
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 17/75 (22%)

Query: 34  GSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVA 93
           G ++T LHLA+R  +    LEI+KL  E  A  N K             +++  +AL++A
Sbjct: 26  GDTDTALHLAARNGN----LEIVKLLLEHGADVNAK-------------DKDGNTALHLA 68

Query: 94  YERGRHDVVKQLLNY 108
              G  ++VK LL +
Sbjct: 69  ARNGNLEIVKLLLEH 83

Length = 91

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	140
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.97
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.96
PHA02791	284	ankyrin-like protein; Provisional	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.95
PHA02791	284	ankyrin-like protein; Provisional	99.95
PHA02875	413	ankyrin repeat protein; Provisional	99.94
PHA02875	413	ankyrin repeat protein; Provisional	99.94
PHA02741	169	hypothetical protein; Provisional	99.94
PHA02874	434	ankyrin repeat protein; Provisional	99.94
PHA02743	166	Viral ankyrin protein; Provisional	99.93
PHA02878	477	ankyrin repeat protein; Provisional	99.93
PHA02946	446	ankyin-like protein; Provisional	99.93
PHA03100	480	ankyrin repeat protein; Provisional	99.93
PHA02874	434	ankyrin repeat protein; Provisional	99.93
PHA02859	209	ankyrin repeat protein; Provisional	99.93
PHA03095	471	ankyrin-like protein; Provisional	99.93
KOG0510	929	consensus Ankyrin repeat protein [General function	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
PHA02798	489	ankyrin-like protein; Provisional	99.92
PHA02884	300	ankyrin repeat protein; Provisional	99.92
PHA02795	437	ankyrin-like protein; Provisional	99.92
PHA03100	480	ankyrin repeat protein; Provisional	99.92
KOG0508	615	consensus Ankyrin repeat protein [General function	99.92
PHA02989	494	ankyrin repeat protein; Provisional	99.92
KOG0510	929	consensus Ankyrin repeat protein [General function	99.92
PHA02878	477	ankyrin repeat protein; Provisional	99.92
KOG0508	615	consensus Ankyrin repeat protein [General function	99.91
PHA02736	154	Viral ankyrin protein; Provisional	99.91
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.91
PHA02859	209	ankyrin repeat protein; Provisional	99.91
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.9
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.9
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.89
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.89
PHA02876	682	ankyrin repeat protein; Provisional	99.89
PHA02946	446	ankyin-like protein; Provisional	99.89
PHA03095	471	ankyrin-like protein; Provisional	99.88
KOG0514	452	consensus Ankyrin repeat protein [General function	99.88
PHA02876	682	ankyrin repeat protein; Provisional	99.88
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.87
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.87
PHA02989	494	ankyrin repeat protein; Provisional	99.87
PHA02917	661	ankyrin-like protein; Provisional	99.86
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.85
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.85
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.85
PHA02798	489	ankyrin-like protein; Provisional	99.85
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.85
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.84
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.84
PHA02741	169	hypothetical protein; Provisional	99.83
PHA02792	631	ankyrin-like protein; Provisional	99.83
KOG0514	452	consensus Ankyrin repeat protein [General function	99.82
PHA02730	672	ankyrin-like protein; Provisional	99.82
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.82
PHA02743	166	Viral ankyrin protein; Provisional	99.81
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.81
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.81
PHA02917	661	ankyrin-like protein; Provisional	99.8
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.8
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.8
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.8
PHA02795	437	ankyrin-like protein; Provisional	99.79
PHA02730	672	ankyrin-like protein; Provisional	99.79
PHA02792	631	ankyrin-like protein; Provisional	99.77
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.77
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.77
PHA02736	154	Viral ankyrin protein; Provisional	99.76
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.76
PHA02884	300	ankyrin repeat protein; Provisional	99.75
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.75
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.73
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.73
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.71
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.71
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.7
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.69
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.66
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.65
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.65
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.65
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.64
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.62
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.6
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.53
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.49
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.43
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	99.36
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.31
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.22
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.21
PF13606	30	Ank_3: Ankyrin repeat	99.2
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.19
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.18
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.15
PF13606	30	Ank_3: Ankyrin repeat	99.13
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.12
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.12
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.07
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	99.04
KOG0522	560	consensus Ankyrin repeat protein [General function	99.03
KOG0522	560	consensus Ankyrin repeat protein [General function	98.94
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.86
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.78
KOG0511	516	consensus Ankyrin repeat protein [General function	98.72
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.7
KOG0511	516	consensus Ankyrin repeat protein [General function	98.69
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.66
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.51
KOG2384	223	consensus Major histocompatibility complex protein	98.41
KOG2384	223	consensus Major histocompatibility complex protein	98.29
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.25
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.13
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.0
KOG2505	591	consensus Ankyrin repeat protein [General function	97.86
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.77
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.75
KOG2505	591	consensus Ankyrin repeat protein [General function	96.94
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.41
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.35
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.11
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	95.72
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	94.77
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	87.94
PF08898	53	DUF1843: Domain of unknown function (DUF1843); Int	80.12

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=7.1e-31  Score=157.65  Aligned_cols=137  Identities=20%  Similarity=0.195  Sum_probs=96.1

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC---------
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP---------   73 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~---------   73 (140)
                      ++.+.+++......++.+++..+..++...|.+|+||||+||..|+.+++.||++.....++.+|+.||+|         
T Consensus         5 ~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~   84 (226)
T KOG4412|consen    5 SLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGN   84 (226)
T ss_pred             chHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCc
Confidence            34566666666667777777666544444445777777777777777777777765444456667777777         


Q ss_pred             ---------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           74 ---------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 ---------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                               ..+..++..++.|.|+||+|+.+|+.+++++|+..|+.++.+|..|+| |||.|+..|.++++++|+
T Consensus        85 ~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qt-plHRAAavGklkvie~Li  159 (226)
T KOG4412|consen   85 DEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQT-PLHRAAAVGKLKVIEYLI  159 (226)
T ss_pred             HHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCc-hhHHHHhccchhhHHHHH
Confidence                     124556777777778888888888888888888777777777777777 888888888777777764

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.1e-29  Score=152.60  Aligned_cols=135  Identities=20%  Similarity=0.211  Sum_probs=109.2

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhh-CCcccCCCCCCCCCC--------
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKL-CPEMLAAPNDKFETP--------   73 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~~~~~--------   73 (140)
                      +|||+||..|..+++..|+++ +....+-.|..||||||+||..|+-|+|+.|+.+ +++ ++..+..|.|+        
T Consensus        40 t~LHwa~S~g~~eiv~fLlsq-~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~ad-vna~tn~G~T~LHyAagK~  117 (226)
T KOG4412|consen   40 TPLHWACSFGHVEIVYFLLSQ-PNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGAD-VNATTNGGQTCLHYAAGKG  117 (226)
T ss_pred             ceeeeeeecCchhHHHHHHhc-CCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCC-cceecCCCcceehhhhcCC
Confidence            577888888888888877763 2332344567788888888888888888888877 455 67777777777        


Q ss_pred             ---------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           74 ---------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 ---------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                               ..++.++.+|..|.||||.|+..|..+++++|+..|+.++.+|..|+| |||.|..-|+.++...|+
T Consensus       118 r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~T-pL~~al~e~~~d~a~lLV  192 (226)
T KOG4412|consen  118 RLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFT-PLHHALAEGHPDVAVLLV  192 (226)
T ss_pred             hhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCcc-HHHHHHhccCchHHHHHH
Confidence                     344566899999999999999999999999999999999999999999 999998888888777664

>PHA02791 ankyrin-like protein; Provisional

Probab=99.96  E-value=5.1e-28  Score=159.46  Aligned_cols=136  Identities=15%  Similarity=0.073  Sum_probs=111.3

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCC-CC-------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFE-TP-------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~-~~-------   73 (140)
                      .||||.|+..|+.++++.|++.+.+.  +..+..|+||||+|+..|+.+++++|++.+++ .+.++..|+ ||       
T Consensus        62 ~TpLh~Aa~~g~~eiV~lLL~~Gadv--n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gad-in~~~~~g~~TpL~~Aa~~  138 (284)
T PHA02791         62 EFPLHQAATLEDTKIVKILLFSGMDD--SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVML  138 (284)
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccCCCCCcHHHHHHHHc
Confidence            47899999999999999998887766  56788899999999999999999999999988 466777775 56       


Q ss_pred             Cch----hhhh----ccc-cCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           74 TDS----WVVH----MMN-RNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 ~~~----~~~~----~~~-~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      ...    .++.    ..+ ..|.||||+|+..|+.+++++|+++|++++.++..|.|+|||+|+..|+.+++++|+
T Consensus       139 g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl  214 (284)
T PHA02791        139 NDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALF  214 (284)
T ss_pred             CCHHHHHHHHhcCCcccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHH
Confidence            000    0111    122 247899999999999999999999999999999889983499999999999999985

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.95  E-value=4.9e-28  Score=167.95  Aligned_cols=132  Identities=20%  Similarity=0.214  Sum_probs=117.0

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCC-CCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVP-GSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~-~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      +.||+|+.+++++.+++|+++++++  +... .-+.||||+|+++|++.++++|+++|++ +..+|.+|.+|        
T Consensus        80 tlLHWAAiNNrl~v~r~li~~gadv--n~~gG~l~stPLHWAar~G~~~vv~lLlqhGAd-pt~~D~~G~~~lHla~~~~  156 (600)
T KOG0509|consen   80 TLLHWAAINNRLDVARYLISHGADV--NAIGGVLGSTPLHWAARNGHISVVDLLLQHGAD-PTLKDKQGLTPLHLAAQFG  156 (600)
T ss_pred             cceeHHHHcCcHHHHHHHHHcCCCc--cccCCCCCCCcchHHHHcCcHHHHHHHHHcCCC-CceecCCCCcHHHHHHHhC
Confidence            5799999999999999999999887  4444 6688999999999999999999999999 79999999998        


Q ss_pred             ---------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCcccccc-CCCCChHHHHHHHcCCHHHHhh
Q 038923           74 ---------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEM-DDGLTTSLHVAASAGHLGTFAN  138 (140)
Q Consensus        74 ---------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~-~~~~t~~l~~A~~~g~~~~~~~  138 (140)
                               ....+++.+|.+|+|||++|+.+|+...+..|++.|+.+...| ..|.| |||||+..|+.+++.+
T Consensus       157 ~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~T-pLHwa~~~gN~~~v~L  230 (600)
T KOG0509|consen  157 HTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNT-PLHWAVVGGNLTAVKL  230 (600)
T ss_pred             chHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCc-hHHHHHhcCCcceEeh
Confidence                     3456778899999999999999999888999999999999888 57888 9999999999988873

>PHA02791 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.1e-26  Score=153.21  Aligned_cols=131  Identities=17%  Similarity=0.181  Sum_probs=106.0

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      .||||.|+..|+.+.++.|++.+...  +.  .++.||||+|+..|+.+++++|++.|++ ++.+|..|.||        
T Consensus        31 ~TpLh~Aa~~g~~eiv~~Ll~~ga~~--n~--~d~~TpLh~Aa~~g~~eiV~lLL~~Gad-vn~~d~~G~TpLh~Aa~~g  105 (284)
T PHA02791         31 HSALYYAIADNNVRLVCTLLNAGALK--NL--LENEFPLHQAATLEDTKIVKILLFSGMD-DSQFDDKGNTALYYAVDSG  105 (284)
T ss_pred             CcHHHHHHHcCCHHHHHHHHHCcCCC--cC--CCCCCHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcC
Confidence            47999999999999999999998665  32  3578999999999999999999999998 67788888888        


Q ss_pred             ---------CchhhhhccccCCC-cHHHHHHHcCCHHHHHHHHcCCCcccccc-CCCCChHHHHHHHcCCHHHHhhhC
Q 038923           74 ---------TDSWVVHMMNRNKE-SALYVAYERGRHDVVKQLLNYPSVSLLEM-DDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 ---------~~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~L~~~~~~~~~~~-~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                               ..+..++.++..|+ ||||+|+..|+.+++++|++.+.+.  .+ ..|.| |||+|+..|+.+++++|+
T Consensus       106 ~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~T-pLh~Aa~~g~~eiv~lLL  180 (284)
T PHA02791        106 NMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLS-CIHITIKNGHVDMMILLL  180 (284)
T ss_pred             CHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCcc-HHHHHHHcCCHHHHHHHH
Confidence                     22334455666664 8999999999999999998876543  22 24677 999999999999988874

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.94  E-value=1.7e-26  Score=160.26  Aligned_cols=136  Identities=16%  Similarity=0.171  Sum_probs=93.1

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC---------
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP---------   73 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~---------   73 (140)
                      +|||.|+..|+.+.++.|++.++... ...+..|.||||+|+..|+.+++++|++.|++ ++.++..|.||         
T Consensus        70 t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad-~~~~~~~g~tpLh~A~~~~~  147 (413)
T PHA02875         70 SELHDAVEEGDVKAVEELLDLGKFAD-DVFYKDGMTPLHLATILKKLDIMKLLIARGAD-PDIPNTDKFSPLHLAVMMGD  147 (413)
T ss_pred             cHHHHHHHCCCHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHhCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcCC
Confidence            45666666666666666666554331 23345677788888887888888888877776 56667777777         


Q ss_pred             --------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           74 --------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 --------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                              ..+..++.++..|.||||+|+..|+.+++++|++.|++++..+..|.+||+|+|+..|+.+++++|+
T Consensus       148 ~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll  222 (413)
T PHA02875        148 IKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFI  222 (413)
T ss_pred             HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHH
Confidence                    2334455666777777777777777777777777777777777666544777777777777777763

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.94  E-value=1.9e-26  Score=160.10  Aligned_cols=133  Identities=19%  Similarity=0.105  Sum_probs=77.2

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCC--------------
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPND--------------   68 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~--------------   68 (140)
                      ++|+.|+..|+.+.++.|++.+.++  +..+..|.||||+|+..|+.+++++|++.|++ ++..+.              
T Consensus         4 ~~L~~A~~~g~~~iv~~Ll~~g~~~--n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~t~L~~A~~~g~   80 (413)
T PHA02875          4 VALCDAILFGELDIARRLLDIGINP--NFEIYDGISPIKLAMKFRDSEAIKLLMKHGAI-PDVKYPDIESELHDAVEEGD   80 (413)
T ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCC--CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-ccccCCCcccHHHHHHHCCC
Confidence            4566666666666666666665554  44455566666666666666666666666654 333333              


Q ss_pred             --------------------CCCCC-----------------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCc
Q 038923           69 --------------------KFETP-----------------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSV  111 (140)
Q Consensus        69 --------------------~~~~~-----------------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~  111 (140)
                                          +|.||                 ..++.++.++..|.||||+|+..|+.+++++|++.|++
T Consensus        81 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~  160 (413)
T PHA02875         81 VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC  160 (413)
T ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence                                34444                 12233344455555666666666666666666666665


Q ss_pred             cccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923          112 SLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus       112 ~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                      ++.++..|.| |||+|+..|+.+++++|
T Consensus       161 ~~~~d~~g~T-pL~~A~~~g~~eiv~~L  187 (413)
T PHA02875        161 LDIEDCCGCT-PLIIAMAKGDIAICKML  187 (413)
T ss_pred             CCCCCCCCCC-HHHHHHHcCCHHHHHHH
Confidence            5555555666 66666666666666555

>PHA02741 hypothetical protein; Provisional

Probab=99.94  E-value=2.1e-25  Score=137.83  Aligned_cols=119  Identities=14%  Similarity=0.156  Sum_probs=105.2

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhh------chHHHhhcCCCCCCcHHHHHHhhCc----HHHHHHHHhhCCcccCCCCCCCC
Q 038923            2 DERLFETILKGDVPNFLNLVHE------DEAIIKQTVPGSSNTILHLASRYEH----EELALEILKLCPEMLAAPNDKFE   71 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~------~~~~~~~~~~~~g~t~l~~A~~~g~----~~~~~~Ll~~~~~~~~~~~~~~~   71 (140)
                      .++||.|++.|+.+.++.|+..      +..+  +..+..|.||||+|+..|+    .+++++|++.++++         
T Consensus        22 ~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i--n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi---------   90 (169)
T PHA02741         22 ENFFHEAARCGCFDIIARFTPFIRGDCHAAAL--NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI---------   90 (169)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHHhccchhhhhh--hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC---------
Confidence            4799999999999999998643      2333  5678899999999999999    58999999999986         


Q ss_pred             CCCchhhhhcccc-CCCcHHHHHHHcCCHHHHHHHHc-CCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           72 TPTDSWVVHMMNR-NKESALYVAYERGRHDVVKQLLN-YPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        72 ~~~~~~~~~~~~~-~~~t~l~~A~~~~~~~~~~~L~~-~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                              +.++. .|+||||+|+..++.+++++|+. .|++++.++..|+| |||.|+..++.+++++|+
T Consensus        91 --------n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t-pL~~A~~~~~~~iv~~L~  152 (169)
T PHA02741         91 --------NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKS-PFELAIDNEDVAMMQILR  152 (169)
T ss_pred             --------CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCC-HHHHHHHCCCHHHHHHHH
Confidence                    56664 89999999999999999999997 59999999999999 999999999999998873

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.94  E-value=1.4e-25  Score=156.56  Aligned_cols=134  Identities=16%  Similarity=0.180  Sum_probs=69.2

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcc--------------------
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEM--------------------   62 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~--------------------   62 (140)
                      ||||.|+..|+.+++++|++.+.+.  +..+..|.||||+|+..|+.+++++|++.|.+.                    
T Consensus        37 tpL~~A~~~g~~~iv~~Ll~~Ga~~--n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g  114 (434)
T PHA02874         37 TPLIDAIRSGDAKIVELFIKHGADI--NHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCG  114 (434)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCc
Confidence            4566666666666666666555544  334455556666666666655555555554421                    


Q ss_pred             --cCCCCCCCCCC-----------------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChH
Q 038923           63 --LAAPNDKFETP-----------------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTS  123 (140)
Q Consensus        63 --~~~~~~~~~~~-----------------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~  123 (140)
                        ++.++..|.||                 ..+..++.++..|.||||+|+..|+.+++++|++.|++++..+..|.| |
T Consensus       115 ~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~t-p  193 (434)
T PHA02874        115 IDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGES-P  193 (434)
T ss_pred             CCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCC-H
Confidence              12233444444                 122223344445555555555555555555555555555555555555 5


Q ss_pred             HHHHHHcCCHHHHhhh
Q 038923          124 LHVAASAGHLGTFANL  139 (140)
Q Consensus       124 l~~A~~~g~~~~~~~L  139 (140)
                      ||+|+..|+.+++++|
T Consensus       194 L~~A~~~g~~~iv~~L  209 (434)
T PHA02874        194 LHNAAEYGDYACIKLL  209 (434)
T ss_pred             HHHHHHcCCHHHHHHH
Confidence            5555555555555544

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.93  E-value=3.7e-25  Score=136.31  Aligned_cols=118  Identities=8%  Similarity=0.088  Sum_probs=101.6

Q ss_pred             HHHHHHHHcCCHHHHH----HHhhhchHHHhhcCCCCCCcHHHHHHhhCcHH---HHHHHHhhCCcccCCCCCCCCCCCc
Q 038923            3 ERLFETILKGDVPNFL----NLVHEDEAIIKQTVPGSSNTILHLASRYEHEE---LALEILKLCPEMLAAPNDKFETPTD   75 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~----~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~---~~~~Ll~~~~~~~~~~~~~~~~~~~   75 (140)
                      ++||.|++.|+++.++    .|++.+...  +..+..|+||||+|+.+|+.+   ++++|++.|+++             
T Consensus        22 ~~l~~a~~~g~~~~l~~~~~~l~~~g~~~--~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi-------------   86 (166)
T PHA02743         22 NTFLRICRTGNIYELMEVAPFISGDGHLL--HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI-------------   86 (166)
T ss_pred             cHHHHHHHcCCHHHHHHHHHHHhhcchhh--hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC-------------
Confidence            4799999999995544    455555554  567889999999999999865   489999999986             


Q ss_pred             hhhhhccc-cCCCcHHHHHHHcCCHHHHHHHH-cCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           76 SWVVHMMN-RNKESALYVAYERGRHDVVKQLL-NYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        76 ~~~~~~~~-~~~~t~l~~A~~~~~~~~~~~L~-~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                          +.++ ..|.||||+|+..|+.+++++|+ +.|++++.++..|.| |||+|+..++.+++++|+
T Consensus        87 ----n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~t-pL~~A~~~~~~~iv~~Ll  148 (166)
T PHA02743         87 ----NARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHET-AYHIAYKMRDRRMMEILR  148 (166)
T ss_pred             ----CCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence                6666 58999999999999999999999 489999999999999 999999999999999884

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.93  E-value=2.3e-25  Score=157.14  Aligned_cols=55  Identities=11%  Similarity=0.106  Sum_probs=47.3

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhC
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLC   59 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~   59 (140)
                      +|||.|++.|+.++++.|++.+.++  +..+..|.||||+||..|+.++++.|++.+
T Consensus        39 tPLh~A~~~g~~e~vk~Ll~~gadv--n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~   93 (477)
T PHA02878         39 IPLHQAVEARNLDVVKSLLTRGHNV--NQPDHRDLTPLHIICKEPNKLGMKEMIRSI   93 (477)
T ss_pred             chHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHCccHhHHHHHHHHH
Confidence            6899999999999999999998777  678899999999999988777666666543

>PHA02946 ankyin-like protein; Provisional

Probab=99.93  E-value=2.1e-25  Score=155.68  Aligned_cols=135  Identities=10%  Similarity=0.064  Sum_probs=99.0

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCc--HHHHHHHHhhCCcccCCCCCCCCCC------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEH--EELALEILKLCPEMLAAPNDKFETP------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~--~~~~~~Ll~~~~~~~~~~~~~~~~~------   73 (140)
                      .||||.|++.|+.++++.|++.++++  +..|..|.||||+|+..++  .+++++|++.|+++....+..|.||      
T Consensus        73 ~TpLh~Aa~~g~~eiv~lLL~~GAdi--n~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~~  150 (446)
T PHA02946         73 NYPLHIASKINNNRIVAMLLTHGADP--NACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTD  150 (446)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCcCCC--CCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHHC
Confidence            47899999999999999999998777  6788899999999887664  7889999999988655567778777      


Q ss_pred             ----------CchhhhhccccCCCcHHHHHHHcC--CHHHHHHHHcCCCccccccCCCCChHHHHHHHcC--CHHHHhhh
Q 038923           74 ----------TDSWVVHMMNRNKESALYVAYERG--RHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAG--HLGTFANL  139 (140)
Q Consensus        74 ----------~~~~~~~~~~~~~~t~l~~A~~~~--~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g--~~~~~~~L  139 (140)
                                ..+..++.++..|+||||+|+..+  +.+++++|++.|++++.++..|.| |||+|+..|  +.+++++|
T Consensus       151 ~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~T-pLH~Aa~~~~~~~~iv~lL  229 (446)
T PHA02946        151 PSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNT-PLHIVCSKTVKNVDIINLL  229 (446)
T ss_pred             CChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCC-HHHHHHHcCCCcHHHHHHH
Confidence                      122334556666777777665543  356677777777777777766777 777777654  56666654

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.93  E-value=3.6e-25  Score=156.17  Aligned_cols=134  Identities=20%  Similarity=0.155  Sum_probs=95.6

Q ss_pred             HHHHHHHHcC--CHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCC------CCC-
Q 038923            3 ERLFETILKG--DVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKF------ETP-   73 (140)
Q Consensus         3 ~~l~~a~~~g--~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~------~~~-   73 (140)
                      ++||.|+..|  +.++++.|++.+.++  +..+..|.||||+|+..|+.+++++|++.|++ +...+..|      .+| 
T Consensus       143 t~L~~A~~~~~~~~~iv~~Ll~~g~di--n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~~t~l  219 (480)
T PHA03100        143 NLLHLYLESNKIDLKILKLLIDKGVDI--NAKNRYGYTPLHIAVEKGNIDVIKFLLDNGAD-INAGDIETLLFTIFETPL  219 (480)
T ss_pred             cHHHHHHHcCCChHHHHHHHHHCCCCc--ccccCCCCCHHHHHHHhCCHHHHHHHHHcCCC-ccCCCCCCCcHHHHHhHH
Confidence            5666666666  666666666666555  44555666777777777777777777776665 44455555      333 


Q ss_pred             ------------------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHH
Q 038923           74 ------------------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGT  135 (140)
Q Consensus        74 ------------------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~  135 (140)
                                        ..+..++.++..|.||||+|+..|+.+++++|++.|++++..+..|.| |++.|+..++.++
T Consensus       220 ~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~t-pl~~A~~~~~~~i  298 (480)
T PHA03100        220 HIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDT-PLHIAILNNNKEI  298 (480)
T ss_pred             HHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCc-HHHHHHHhCCHHH
Confidence                              122345667778888888888888888888888888888888888888 8888888888888


Q ss_pred             HhhhC
Q 038923          136 FANLV  140 (140)
Q Consensus       136 ~~~Ll  140 (140)
                      +++|+
T Consensus       299 v~~Ll  303 (480)
T PHA03100        299 FKLLL  303 (480)
T ss_pred             HHHHH
Confidence            88764

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.93  E-value=8.4e-25  Score=152.73  Aligned_cols=137  Identities=19%  Similarity=0.246  Sum_probs=120.0

Q ss_pred             CCHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC-------
Q 038923            1 MDERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP-------   73 (140)
Q Consensus         1 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~-------   73 (140)
                      |+..|+.|+..|+++.++.|++.++... +..+..|.||||.|+..|+.+++++|++.|++ .+..+..|.+|       
T Consensus         1 ~~~~l~~ai~~gd~~~v~~ll~~~~~~~-n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~-~n~~~~~~~t~L~~A~~~   78 (434)
T PHA02874          1 ASQDLRMCIYSGDIEAIEKIIKNKGNCI-NISVDETTTPLIDAIRSGDAKIVELFIKHGAD-INHINTKIPHPLLTAIKI   78 (434)
T ss_pred             CcHHHHHHHhcCCHHHHHHHHHcCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHc
Confidence            6788999999999999999998765542 45667899999999999999999999999998 57788888888       


Q ss_pred             ---------------------------------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCC
Q 038923           74 ---------------------------------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGL  120 (140)
Q Consensus        74 ---------------------------------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~  120 (140)
                                                       ..+..++..+..|.||||+|+..|+.+++++|++.|++++..+..|.
T Consensus        79 ~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~  158 (434)
T PHA02874         79 GAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGC  158 (434)
T ss_pred             CCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCC
Confidence                                             01123456778899999999999999999999999999999999999


Q ss_pred             ChHHHHHHHcCCHHHHhhhC
Q 038923          121 TTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       121 t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      | |||+|+..|+.+++++|+
T Consensus       159 t-pLh~A~~~~~~~iv~~Ll  177 (434)
T PHA02874        159 Y-PIHIAIKHNFFDIIKLLL  177 (434)
T ss_pred             C-HHHHHHHCCcHHHHHHHH
Confidence            9 999999999999999884

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.93  E-value=1.5e-24  Score=138.10  Aligned_cols=132  Identities=13%  Similarity=0.037  Sum_probs=108.0

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhC--cHHHHHHHHhhCCcccCCCC-CCCCCC-----
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYE--HEELALEILKLCPEMLAAPN-DKFETP-----   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g--~~~~~~~Ll~~~~~~~~~~~-~~~~~~-----   73 (140)
                      .+||+.|++.|+++.++.|++..     +..+..|.||||+|+..+  +.+++++|++.|+++ +.++ ..|.||     
T Consensus        22 ~~pL~~A~~~~~~~~vk~Li~~~-----n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~TpLh~a~   95 (209)
T PHA02859         22 CNPLFYYVEKDDIEGVKKWIKFV-----NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSALHHYL   95 (209)
T ss_pred             CcHHHHHHHhCcHHHHHHHHHhh-----hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCHHHHHH
Confidence            36899999999999999998652     346678999999998754  889999999999984 5554 578887     


Q ss_pred             ---------------CchhhhhccccCCCcHHHHHHH--cCCHHHHHHHHcCCCccccccCCCCChHHHH-HHHcCCHHH
Q 038923           74 ---------------TDSWVVHMMNRNKESALYVAYE--RGRHDVVKQLLNYPSVSLLEMDDGLTTSLHV-AASAGHLGT  135 (140)
Q Consensus        74 ---------------~~~~~~~~~~~~~~t~l~~A~~--~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~-A~~~g~~~~  135 (140)
                                     ..+..++.++..|.||||.|+.  .++.+++++|++.|++++.++..|.| |||. |+..++.++
T Consensus        96 ~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t-~Lh~~a~~~~~~~i  174 (209)
T PHA02859         96 SFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNN-ILYSYILFHSDKKI  174 (209)
T ss_pred             HhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCc-HHHHHHHhcCCHHH
Confidence                           2344567788899999999876  46899999999999999999999999 9995 566888999


Q ss_pred             HhhhC
Q 038923          136 FANLV  140 (140)
Q Consensus       136 ~~~Ll  140 (140)
                      +++|+
T Consensus       175 v~~Ll  179 (209)
T PHA02859        175 FDFLT  179 (209)
T ss_pred             HHHHH
Confidence            98874

>PHA03095 ankyrin-like protein; Provisional

Probab=99.93  E-value=6.8e-25  Score=154.45  Aligned_cols=134  Identities=13%  Similarity=0.068  Sum_probs=95.2

Q ss_pred             HHHHHHHHcC-CHHHHHHHhhhchHHHhhcCCCCCCcHHHHHH--hhCcHHHHHHHHhhCCcccCCCCCCCCCC------
Q 038923            3 ERLFETILKG-DVPNFLNLVHEDEAIIKQTVPGSSNTILHLAS--RYEHEELALEILKLCPEMLAAPNDKFETP------   73 (140)
Q Consensus         3 ~~l~~a~~~g-~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~--~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~------   73 (140)
                      ||||.|+..| ..++++.|++.+.++  +..+..|.||||+|+  ..++.+++++|++.|++ ++..|..|.||      
T Consensus        85 TpLh~A~~~~~~~~iv~lLl~~ga~i--n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad-~~~~d~~g~tpL~~a~~  161 (471)
T PHA03095         85 TPLHLYLYNATTLDVIKLLIKAGADV--NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGAD-VNALDLYGMTPLAVLLK  161 (471)
T ss_pred             CHHHHHHHcCCcHHHHHHHHHcCCCC--CCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHH
Confidence            5677777777 466667777666655  455666677777766  44456666666666665 34444445444      


Q ss_pred             --------------------------------------------------------------------------------
Q 038923           74 --------------------------------------------------------------------------------   73 (140)
Q Consensus        74 --------------------------------------------------------------------------------   73 (140)
                                                                                                      
T Consensus       162 ~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~  241 (471)
T PHA03095        162 SRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVL  241 (471)
T ss_pred             cCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHH
Confidence                                                                                            


Q ss_pred             ---CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           74 ---TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 ---~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                         ..+..++.++..|+||||+|+..|+.+++++|++.|++++..+..|.| |||.|+..|+.++++.|+
T Consensus       242 ~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~t-pl~~A~~~~~~~~v~~LL  310 (471)
T PHA03095        242 PLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNT-PLSLMVRNNNGRAVRAAL  310 (471)
T ss_pred             HHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCC-HHHHHHHhCCHHHHHHHH
Confidence               011234556778889999999999999999999889999888888888 999999999988888764

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=2.7e-25  Score=158.09  Aligned_cols=135  Identities=20%  Similarity=0.205  Sum_probs=122.0

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      .+|+|.|+..|+.++++.|++.+.++  +..|+.|.||||.||++++.|..+.|++.+++ +.+.|.+|..|        
T Consensus       122 ~aplh~A~~~~~~s~L~~Ll~~~~dv--nl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~-~~K~~~~~~~~iH~aa~s~  198 (929)
T KOG0510|consen  122 NAPLHLAADSGNYSCLKLLLDYGADV--NLEDENGFTPLHLAARKNKVEAKKELINKGAD-PCKSDIDGNFPIHEAARSG  198 (929)
T ss_pred             cCchhhccccchHHHHHHHHHhcCCc--cccccCCCchhhHHHhcChHHHHHHHHhcCCC-CCcccCcCCchHHHHHHhc
Confidence            46899999999999999999998666  77888999999999999999988999999998 67888888887        


Q ss_pred             --------------------------------------------------------------CchhhhhccccCCCcHHH
Q 038923           74 --------------------------------------------------------------TDSWVVHMMNRNKESALY   91 (140)
Q Consensus        74 --------------------------------------------------------------~~~~~~~~~~~~~~t~l~   91 (140)
                                                                                    ..+.+++.+|++|.||||
T Consensus       199 s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH  278 (929)
T KOG0510|consen  199 SKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLH  278 (929)
T ss_pred             chhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHH
Confidence                                                                          235668889999999999


Q ss_pred             HHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           92 VAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        92 ~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      +||+.|+.++++.|+.+|++++.++.++.| |||.|+.+|++.+++.||
T Consensus       279 ~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~s-pLH~AA~yg~~ntv~rLL  326 (929)
T KOG0510|consen  279 YAARQGGPESVDNLLGFGASINSKNKDEES-PLHFAAIYGRINTVERLL  326 (929)
T ss_pred             HHHHcCChhHHHHHHHcCCcccccCCCCCC-chHHHHHcccHHHHHHHH
Confidence            999999999999999999999999999999 999999999999999875

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=7.4e-25  Score=162.56  Aligned_cols=136  Identities=20%  Similarity=0.164  Sum_probs=118.9

Q ss_pred             CCHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCC------
Q 038923            1 MDERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPT------   74 (140)
Q Consensus         1 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~------   74 (140)
                      |.++|+.||..|+.+.++.|++.+.++  +..|..|.||||+|+..|+.+++++|+++|++ ++.+|.+|.||.      
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~d~--n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad-in~~d~~G~TpL~~A~~~  601 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAKLDP--DIGDSKGRTPLHIAASKGYEDCVLVLLKHACN-VHIRDANGNTALWNAISA  601 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC-CCCcCCCCCCHHHHHHHh
Confidence            357899999999999999999998877  67889999999999999999999999999998 688999999991      


Q ss_pred             -chh----hh----hccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           75 -DSW----VV----HMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        75 -~~~----~~----~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                       +..    +.    ......+.++||.|+..|+.++++.|++.|++++.+|..|.| |||+|+..|+.+++++|+
T Consensus       602 g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~T-pLh~A~~~g~~~iv~~Ll  675 (823)
T PLN03192        602 KHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGAT-ALQVAMAEDHVDMVRLLI  675 (823)
T ss_pred             CCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCC-HHHHHHHCCcHHHHHHHH
Confidence             100    00    111245678999999999999999999999999999999999 999999999999999985

>PHA02798 ankyrin-like protein; Provisional

Probab=99.92  E-value=1e-24  Score=154.17  Aligned_cols=136  Identities=13%  Similarity=0.141  Sum_probs=113.8

Q ss_pred             CHHHHHHHHcC---CHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCc---HHHHHHHHhhCCcccCCCCCCCCCCC-
Q 038923            2 DERLFETILKG---DVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEH---EELALEILKLCPEMLAAPNDKFETPT-   74 (140)
Q Consensus         2 ~~~l~~a~~~g---~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~---~~~~~~Ll~~~~~~~~~~~~~~~~~~-   74 (140)
                      .||||.|+..|   +.+.++.|++.|+++  +..+..|.||||+|+..|+   .+++++|++.|+++....+..|.+|. 
T Consensus       110 ~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv--n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh  187 (489)
T PHA02798        110 ETPLYCLLSNGYINNLEILLFMIENGADT--TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLH  187 (489)
T ss_pred             CcHHHHHHHcCCcChHHHHHHHHHcCCCc--cccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHH
Confidence            47899999876   789999999998887  6788899999999999887   89999999999874333344555550 


Q ss_pred             -----------------------------------------------------------chhhhhccccCCCcHHHHHHH
Q 038923           75 -----------------------------------------------------------DSWVVHMMNRNKESALYVAYE   95 (140)
Q Consensus        75 -----------------------------------------------------------~~~~~~~~~~~~~t~l~~A~~   95 (140)
                                                                                 ....++.+|..|+||||+|+.
T Consensus       188 ~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~  267 (489)
T PHA02798        188 CYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVS  267 (489)
T ss_pred             HHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHH
Confidence                                                                       011345678889999999999


Q ss_pred             cCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           96 RGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        96 ~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      .|+.+++++|++.|++++..+..|.| ||++|+..++.++++.|+
T Consensus       268 ~~~~~~v~~LL~~GAdin~~d~~G~T-pL~~A~~~~~~~iv~~lL  311 (489)
T PHA02798        268 HNNRKIFEYLLQLGGDINIITELGNT-CLFTAFENESKFIFNSIL  311 (489)
T ss_pred             cCcHHHHHHHHHcCCcccccCCCCCc-HHHHHHHcCcHHHHHHHH
Confidence            99999999999999999999999999 999999999999998764

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.92  E-value=4.1e-24  Score=141.33  Aligned_cols=117  Identities=14%  Similarity=0.122  Sum_probs=104.1

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcC----CCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchh
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTV----PGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSW   77 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~----~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~   77 (140)
                      .++|+.|++.|+.+.++.|++.|+++  +..    +..|.||||+|+..|+.+++++|+++|+++               
T Consensus        34 ~~lL~~A~~~~~~eivk~LL~~GAdi--N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADV---------------   96 (300)
T PHA02884         34 ANILYSSIKFHYTDIIDAILKLGADP--EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV---------------   96 (300)
T ss_pred             CHHHHHHHHcCCHHHHHHHHHCCCCc--cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc---------------
Confidence            46899999999999999999999887  433    468999999999999999999999999986               


Q ss_pred             hhhcc-ccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhh
Q 038923           78 VVHMM-NRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFAN  138 (140)
Q Consensus        78 ~~~~~-~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~  138 (140)
                        +.. +..|.||||.|+..|+.+++++|++.|++++.++..|.| |||.|+..++.+++..
T Consensus        97 --N~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~T-pL~~A~~~~~~~~~~~  155 (300)
T PHA02884         97 --NRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVT-PIELALMICNNFLAFM  155 (300)
T ss_pred             --CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC-HHHHHHHhCChhHHHH
Confidence              554 457999999999999999999999999999999999999 9999999877665543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.92  E-value=3e-24  Score=147.31  Aligned_cols=134  Identities=17%  Similarity=0.057  Sum_probs=114.7

Q ss_pred             CHHHHHHHH--cCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCC-----CCCCCC-
Q 038923            2 DERLFETIL--KGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPN-----DKFETP-   73 (140)
Q Consensus         2 ~~~l~~a~~--~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~-----~~~~~~-   73 (140)
                      .++||.++.  .|+.++++.|+++|+++  +.  .++.||+|.|+..|+.+++++|+++|++..+..+     ..+.++ 
T Consensus       117 ~~~L~~~~~n~~n~~eiV~~LI~~GADI--n~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l  192 (437)
T PHA02795        117 QDLLLYYLSNAYVEIDIVDFMVDHGAVI--YK--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRG  192 (437)
T ss_pred             cHHHHHHHHhcCCCHHHHHHHHHCCCCC--CC--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchh
Confidence            478999999  99999999999999987  33  3568999999999999999999999985433332     224443 


Q ss_pred             ----------------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCC-----
Q 038923           74 ----------------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGH-----  132 (140)
Q Consensus        74 ----------------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~-----  132 (140)
                                      ..++.++.++..|.||||+|+..|+.+++++|++.|++++.++..|.| |||+|+..|+     
T Consensus       193 ~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~T-pLh~Aa~~g~~~~~~  271 (437)
T PHA02795        193 FLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYT-CLDVAVDRGSVIARR  271 (437)
T ss_pred             HHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCC-HHHHHHHcCCccccc
Confidence                            456678899999999999999999999999999999999999999999 9999999984     


Q ss_pred             ---HHHHhhhC
Q 038923          133 ---LGTFANLV  140 (140)
Q Consensus       133 ---~~~~~~Ll  140 (140)
                         .+++++|+
T Consensus       272 ~~~~eIvelLL  282 (437)
T PHA02795        272 ETHLKILEILL  282 (437)
T ss_pred             ccHHHHHHHHH
Confidence               68998874

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.92  E-value=1.6e-24  Score=152.87  Aligned_cols=135  Identities=18%  Similarity=0.143  Sum_probs=112.7

Q ss_pred             CHHHHHHH--HcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhC--cHHHHHHHHhhCCcccCCCCCCCCCC----
Q 038923            2 DERLFETI--LKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYE--HEELALEILKLCPEMLAAPNDKFETP----   73 (140)
Q Consensus         2 ~~~l~~a~--~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g--~~~~~~~Ll~~~~~~~~~~~~~~~~~----   73 (140)
                      .||||.|+  ..|+.++++.|++.+.+.  +..+..|.||||+|+..|  +.+++++|++.|++ ++..+..|.||    
T Consensus       107 ~tpL~~A~~~~~~~~~iv~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~d-in~~d~~g~tpL~~A  183 (480)
T PHA03100        107 ITPLLYAISKKSNSYSIVEYLLDNGANV--NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD-INAKNRYGYTPLHIA  183 (480)
T ss_pred             CchhhHHHhcccChHHHHHHHHHcCCCC--CccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCC-cccccCCCCCHHHHH
Confidence            46888888  889999999988887776  567788899999999988  88999999998887 56777788888    


Q ss_pred             -------------CchhhhhccccCC------CcHHHHHHHcCC--HHHHHHHHcCCCccccccCCCCChHHHHHHHcCC
Q 038923           74 -------------TDSWVVHMMNRNK------ESALYVAYERGR--HDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGH  132 (140)
Q Consensus        74 -------------~~~~~~~~~~~~~------~t~l~~A~~~~~--~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~  132 (140)
                                   ..+..++..+..+      .||+|.|+..|+  .+++++|++.|++++.++..|.| |||+|+..|+
T Consensus       184 ~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~T-pL~~A~~~~~  262 (480)
T PHA03100        184 VEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFT-PLHYAVYNNN  262 (480)
T ss_pred             HHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCC
Confidence                         2333345555566      789999999998  99999999999999999988999 9999999999


Q ss_pred             HHHHhhhC
Q 038923          133 LGTFANLV  140 (140)
Q Consensus       133 ~~~~~~Ll  140 (140)
                      .+++++|+
T Consensus       263 ~~iv~~Ll  270 (480)
T PHA03100        263 PEFVKYLL  270 (480)
T ss_pred             HHHHHHHH
Confidence            99999874

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=5.1e-25  Score=149.10  Aligned_cols=117  Identities=20%  Similarity=0.239  Sum_probs=64.7

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhcc
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMM   82 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (140)
                      +||..|+..|++++|+.|++.+...  +.......|||.-||.-||++++++|+++++++                 +..
T Consensus        86 ppLWaAsaAGHl~vVk~L~~~ga~V--N~tT~TNStPLraACfDG~leivKyLvE~gad~-----------------~Ia  146 (615)
T KOG0508|consen   86 PPLWAASAAGHLEVVKLLLRRGASV--NDTTRTNSTPLRAACFDGHLEIVKYLVEHGADP-----------------EIA  146 (615)
T ss_pred             chhhHHhccCcHHHHHHHHHhcCcc--ccccccCCccHHHHHhcchhHHHHHHHHcCCCC-----------------ccc
Confidence            3566666666666666666666444  323344456666666666666666666666663                 344


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923           83 NRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus        83 ~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                      |+.|.|.|++||.+|+.+++++|++.|+|++.++..|.| +||.++..|+++++++|
T Consensus       147 nrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNT-ALH~caEsG~vdivq~L  202 (615)
T KOG0508|consen  147 NRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNT-ALHDCAESGSVDIVQLL  202 (615)
T ss_pred             ccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCch-HHHhhhhcccHHHHHHH
Confidence            444444444444444444444444444444444444444 44444444444444444

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.92  E-value=4.1e-24  Score=151.35  Aligned_cols=137  Identities=12%  Similarity=0.105  Sum_probs=105.0

Q ss_pred             CHHHHHHHHc---CCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhh--CcHHHHHHHHhhCCcccCCCCCCCCCC---
Q 038923            2 DERLFETILK---GDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRY--EHEELALEILKLCPEMLAAPNDKFETP---   73 (140)
Q Consensus         2 ~~~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~--g~~~~~~~Ll~~~~~~~~~~~~~~~~~---   73 (140)
                      .||||.|+..   |+.++++.|++.|.++. +..+..|+||||+|+..  ++.+++++|++.|+++....+..|.||   
T Consensus       109 ~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin-~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~  187 (494)
T PHA02989        109 VSPIVCFIYNSNINNCDMLRFLLSKGINVN-DVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNI  187 (494)
T ss_pred             CcHHHHHHHhcccCcHHHHHHHHHCCCCcc-cccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHH
Confidence            3677766654   56778888888776651 24566778888877643  467778888877776433355566665   


Q ss_pred             --------------------------------------------------------CchhhhhccccCCCcHHHHHHHcC
Q 038923           74 --------------------------------------------------------TDSWVVHMMNRNKESALYVAYERG   97 (140)
Q Consensus        74 --------------------------------------------------------~~~~~~~~~~~~~~t~l~~A~~~~   97 (140)
                                                                              .....++.+|..|+||||+|+..|
T Consensus       188 a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~  267 (494)
T PHA02989        188 YLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVD  267 (494)
T ss_pred             HHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhc
Confidence                                                                    001224667788999999999999


Q ss_pred             CHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           98 RHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        98 ~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      +.+++++|++.|++++.++..|.| |||+|+..|+.++++.|+
T Consensus       268 ~~~~v~~LL~~Gadin~~d~~G~T-pL~~A~~~~~~~iv~~LL  309 (494)
T PHA02989        268 NYEAFNYLLKLGDDIYNVSKDGDT-VLTYAIKHGNIDMLNRIL  309 (494)
T ss_pred             CHHHHHHHHHcCCCccccCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999 999999999999999875

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=1.6e-24  Score=154.14  Aligned_cols=137  Identities=24%  Similarity=0.305  Sum_probs=118.4

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHH-------------HhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCC
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAI-------------IKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPND   68 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~-------------~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~   68 (140)
                      .+|||.|+..|++++++.+++.+...             ..+..|.+|.||||+||+.|+.++++.|+..|++ ++.++.
T Consensus       226 ~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~-I~~kn~  304 (929)
T KOG0510|consen  226 ATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGAS-INSKNK  304 (929)
T ss_pred             CcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCc-ccccCC
Confidence            36899999999999999998865332             2235788999999999999999999999999999 788889


Q ss_pred             CCCCC-------------------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccc---cccCCCCChHHHH
Q 038923           69 KFETP-------------------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSL---LEMDDGLTTSLHV  126 (140)
Q Consensus        69 ~~~~~-------------------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~---~~~~~~~t~~l~~  126 (140)
                      ++.+|                   .+.-+.+..|..|.||+|.|+..||..+++.|++.|+...   ..|.+|.| |||.
T Consensus       305 d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~T-aLH~  383 (929)
T KOG0510|consen  305 DEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNT-ALHL  383 (929)
T ss_pred             CCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCch-hhhH
Confidence            99999                   1223467788899999999999999999999999998877   44878999 9999


Q ss_pred             HHHcCCHHHHhhhC
Q 038923          127 AASAGHLGTFANLV  140 (140)
Q Consensus       127 A~~~g~~~~~~~Ll  140 (140)
                      |+..|+..++++|+
T Consensus       384 Aa~~g~~~av~~Li  397 (929)
T KOG0510|consen  384 AAKYGNTSAVQKLI  397 (929)
T ss_pred             HHHhccHHHHHHHH
Confidence            99999999999874

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.92  E-value=4.2e-24  Score=150.74  Aligned_cols=132  Identities=17%  Similarity=0.031  Sum_probs=111.3

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      .||||.|+..|+.+.++.|++.++++  +..+..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||        
T Consensus       169 ~tpLh~A~~~~~~~iv~~Ll~~gad~--n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~-in~~d~~g~TpLh~A~~~~  245 (477)
T PHA02878        169 NTALHYATENKDQRLTELLLSYGANV--NIPDKTNNSPLHHAVKHYNKPIVHILLENGAS-TDARDKCGNTPLHISVGYC  245 (477)
T ss_pred             CCHHHHHHhCCCHHHHHHHHHCCCCC--CCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhc
Confidence            47999999999999999999998877  67888999999999999999999999999998 67888899998        


Q ss_pred             ----------Cchhhhhcccc-CCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcC-CHHHHhhh
Q 038923           74 ----------TDSWVVHMMNR-NKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAG-HLGTFANL  139 (140)
Q Consensus        74 ----------~~~~~~~~~~~-~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g-~~~~~~~L  139 (140)
                                ..+..++.++. .|.||||+|  .++.+++++|++.|++++..+..|.| |||.|+..+ ..+++++|
T Consensus       246 ~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~T-pL~~A~~~~~~~~~~~~l  320 (477)
T PHA02878        246 KDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLT-PLSSAVKQYLCINIGRIL  320 (477)
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCC-HHHHHHHHcCccchHHHH
Confidence                      22333455554 689999999  56788999999999999999999999 999998754 45555554

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=6.7e-25  Score=148.52  Aligned_cols=118  Identities=22%  Similarity=0.251  Sum_probs=111.5

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhc
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHM   81 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   81 (140)
                      +|||..||..|+++.+++|++++.++  ++.++.|.|.||+||.+||.+|+++|++.|+++                 +.
T Consensus       118 StPLraACfDG~leivKyLvE~gad~--~IanrhGhTcLmIa~ykGh~~I~qyLle~gADv-----------------n~  178 (615)
T KOG0508|consen  118 STPLRAACFDGHLEIVKYLVEHGADP--EIANRHGHTCLMIACYKGHVDIAQYLLEQGADV-----------------NA  178 (615)
T ss_pred             CccHHHHHhcchhHHHHHHHHcCCCC--cccccCCCeeEEeeeccCchHHHHHHHHhCCCc-----------------ch
Confidence            48999999999999999999999888  788999999999999999999999999999997                 78


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           82 MNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        82 ~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      ++..|.|+||.|+..|+.+++++|+++|+.++... .|-| ||..|+..|+.++|++|+
T Consensus       179 ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~-~Gmt-PL~~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  179 KSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDG-HGMT-PLLLAAVTGHTDIVERLL  235 (615)
T ss_pred             hcccCchHHHhhhhcccHHHHHHHHhCCceeeecC-CCCc-hHHHHhhhcchHHHHHHh
Confidence            89999999999999999999999999999887666 6999 999999999999999885

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.91  E-value=3.4e-24  Score=130.66  Aligned_cols=121  Identities=12%  Similarity=0.047  Sum_probs=99.1

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhh---chHHHhhcCCCCCCcHHHHHHhhCcH---HHHHHHHhhCCcccCCCCCCCCCCCc
Q 038923            2 DERLFETILKGDVPNFLNLVHE---DEAIIKQTVPGSSNTILHLASRYEHE---ELALEILKLCPEMLAAPNDKFETPTD   75 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~---~~~~~~~~~~~~g~t~l~~A~~~g~~---~~~~~Ll~~~~~~~~~~~~~~~~~~~   75 (140)
                      .||||+|++.|+.+.+......   .........+..|.||||+|+..|+.   +++++|++.|+++             
T Consensus        18 ~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi-------------   84 (154)
T PHA02736         18 ENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI-------------   84 (154)
T ss_pred             CCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCc-------------
Confidence            4799999999995443222111   11122244678999999999999986   5789999999986             


Q ss_pred             hhhhhccc-cCCCcHHHHHHHcCCHHHHHHHHc-CCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           76 SWVVHMMN-RNKESALYVAYERGRHDVVKQLLN-YPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        76 ~~~~~~~~-~~~~t~l~~A~~~~~~~~~~~L~~-~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                          +.++ ..|+||||+|+..|+.+++++|++ .|++++.++..|+| |||+|+..|+.+++++|+
T Consensus        85 ----n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~t-pL~~A~~~~~~~i~~~Ll  146 (154)
T PHA02736         85 ----NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKT-PYYVACERHDAKMMNILR  146 (154)
T ss_pred             ----cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCC-HHHHHHHcCCHHHHHHHH
Confidence                5666 489999999999999999999997 59999999999999 999999999999999874

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.91  E-value=2.9e-24  Score=149.36  Aligned_cols=132  Identities=19%  Similarity=0.158  Sum_probs=102.5

Q ss_pred             HHHHHHHcCCHHHHHHHhhh-chHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC---------
Q 038923            4 RLFETILKGDVPNFLNLVHE-DEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP---------   73 (140)
Q Consensus         4 ~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~---------   73 (140)
                      .++.|+..|+++.++.+++. +...  +..|++|.|+||+|+.+++++++++|+++|+++....-.-+.||         
T Consensus        47 ~~v~A~q~G~l~~v~~lve~~g~~v--~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~  124 (600)
T KOG0509|consen   47 DIVKATQYGELETVKELVESEGESV--NNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGH  124 (600)
T ss_pred             hhhhHhhcchHHHHHHHHhhcCcCC--CCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCc
Confidence            57899999999999999998 4443  56788999999999999999999999999999543333556666         


Q ss_pred             --------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhh
Q 038923           74 --------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFAN  138 (140)
Q Consensus        74 --------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~  138 (140)
                              ..+++...+|.+|.+|+|+|++.|+.-++-+|+..+++++.+|.+|+| |||||+.+|+...++.
T Consensus       125 ~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grT-pLmwAaykg~~~~v~~  196 (600)
T KOG0509|consen  125 ISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRT-PLMWAAYKGFALFVRR  196 (600)
T ss_pred             HHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCC-HHHHHHHhcccHHHHH
Confidence                    455556677777777777777777777777777777777777777777 7777777777553433

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.91  E-value=2.9e-23  Score=132.19  Aligned_cols=126  Identities=9%  Similarity=0.085  Sum_probs=108.2

Q ss_pred             CHHHHHHHHcC--CHHHHHHHhhhchHHHhhcCC-CCCCcHHHHHHhh---CcHHHHHHHHhhCCcccCCCCCCCCCC--
Q 038923            2 DERLFETILKG--DVPNFLNLVHEDEAIIKQTVP-GSSNTILHLASRY---EHEELALEILKLCPEMLAAPNDKFETP--   73 (140)
Q Consensus         2 ~~~l~~a~~~g--~~~~~~~ll~~~~~~~~~~~~-~~g~t~l~~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~~~~~--   73 (140)
                      .||||.|+..+  +.++++.|++.++++  +..+ ..|.||||+|+..   ++.+++++|+++|++ ++.+|..|.||  
T Consensus        52 ~TpLh~a~~~~~~~~eiv~~Ll~~gadv--n~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gad-in~~d~~G~TpLh  128 (209)
T PHA02859         52 ETPIFSCLEKDKVNVEILKFLIENGADV--NFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSS-ITEEDEDGKNLLH  128 (209)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHCCCCC--CccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCC-CCCcCCCCCCHHH
Confidence            58999999854  899999999998887  4454 5799999998764   479999999999998 68899999999  


Q ss_pred             -----------------CchhhhhccccCCCcHHHH-HHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcC
Q 038923           74 -----------------TDSWVVHMMNRNKESALYV-AYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAG  131 (140)
Q Consensus        74 -----------------~~~~~~~~~~~~~~t~l~~-A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g  131 (140)
                                       ..+..++.++..|.||||. |+..++.+++++|++.|++++.++..|.| ||++|..++
T Consensus       129 ~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~t-pl~la~~~~  203 (209)
T PHA02859        129 MYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYN-CYDLIKFRN  203 (209)
T ss_pred             HHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCC-HHHHHhhhh
Confidence                             2334467788899999996 56788999999999999999999999999 999998765

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.90  E-value=3.8e-23  Score=150.09  Aligned_cols=135  Identities=16%  Similarity=0.046  Sum_probs=110.4

Q ss_pred             CHHHHHHHH--cCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCc--HHHHHHHHhhCCcccCCCCCCCCCCCc--
Q 038923            2 DERLFETIL--KGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEH--EELALEILKLCPEMLAAPNDKFETPTD--   75 (140)
Q Consensus         2 ~~~l~~a~~--~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~--~~~~~~Ll~~~~~~~~~~~~~~~~~~~--   75 (140)
                      .||||.|+.  .++.+.++.|++.+.++  +..+..|.||||+|+..|+  .+++++|++.|++ ++.++..|.||..  
T Consensus       178 ~TpLH~A~~n~~~~~eIVklLLe~GADV--N~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GAD-VN~kD~~G~TPLh~A  254 (764)
T PHA02716        178 YGILHAYLGNMYVDIDILEWLCNNGVNV--NLQNNHLITPLHTYLITGNVCASVIKKIIELGGD-MDMKCVNGMSPIMTY  254 (764)
T ss_pred             CcHHHHHHHhccCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHH
Confidence            378998764  46789999999998887  6788899999999999995  5899999999998 6788889999811  


Q ss_pred             ----------------------------------------------------hhhhhccccCCCcHHHHHHH--cCCHHH
Q 038923           76 ----------------------------------------------------SWVVHMMNRNKESALYVAYE--RGRHDV  101 (140)
Q Consensus        76 ----------------------------------------------------~~~~~~~~~~~~t~l~~A~~--~~~~~~  101 (140)
                                                                          +..++.++..|+||||+|+.  .++.++
T Consensus       255 i~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eI  334 (764)
T PHA02716        255 IINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDI  334 (764)
T ss_pred             HHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchH
Confidence                                                                12235567788999998764  457899


Q ss_pred             HHHHHcCCCccccccCCCCChHHHHHHH--------------cCCHHHHhhhC
Q 038923          102 VKQLLNYPSVSLLEMDDGLTTSLHVAAS--------------AGHLGTFANLV  140 (140)
Q Consensus       102 ~~~L~~~~~~~~~~~~~~~t~~l~~A~~--------------~g~~~~~~~Ll  140 (140)
                      +++|++.|++++.++..|+| |||+|+.              .++.+++++|+
T Consensus       335 VklLLe~GADIN~kD~~G~T-PLH~A~~~lav~~~ld~~~~~~~~~eVVklLL  386 (764)
T PHA02716        335 IKLLHEYGNDLNEPDNIGNT-VLHTYLSMLSVVNILDPETDNDIRLDVIQCLI  386 (764)
T ss_pred             HHHHHHcCCCCccCCCCCCC-HHHHHHHhhhhhccccccccccChHHHHHHHH
Confidence            99999999999999989999 9998865              36788888874

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.90  E-value=2.8e-23  Score=124.42  Aligned_cols=117  Identities=21%  Similarity=0.162  Sum_probs=105.1

Q ss_pred             HHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccc
Q 038923            4 RLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMN   83 (140)
Q Consensus         4 ~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (140)
                      -+.+|+..+.++.|+.|++..+..++ ..|.+|.||||-|+..||.+|++.|+..|++.                 +.+.
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vN-trD~D~YTpLHRAaYn~h~div~~ll~~gAn~-----------------~a~T  127 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVN-TRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-----------------EAKT  127 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhcccccc-ccccccccHHHHHHhcCchHHHHHHHHccCCc-----------------cccc
Confidence            36789999999999999999888754 68999999999999999999999999999986                 7888


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHH-HHhhh
Q 038923           84 RNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLG-TFANL  139 (140)
Q Consensus        84 ~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~-~~~~L  139 (140)
                      ..||||||.||..++.+++..|+.+|+|++.......| |||+|+...+.. .+++|
T Consensus       128 ~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~lt-pLhlaa~~rn~r~t~~~L  183 (228)
T KOG0512|consen  128 NEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLT-PLHLAAGNRNSRDTLELL  183 (228)
T ss_pred             ccCccchhhhhcccchhHHHHHHhccCcccccccccch-hhHHhhcccchHHHHHHH
Confidence            99999999999999999999999999999999977777 999999877643 45544

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.89  E-value=1.1e-22  Score=147.80  Aligned_cols=135  Identities=11%  Similarity=0.001  Sum_probs=114.2

Q ss_pred             CHHHHHHHHcCC--HHHHHHHhhhchHHHhhcCCCCCCcHHHHH------------------------------------
Q 038923            2 DERLFETILKGD--VPNFLNLVHEDEAIIKQTVPGSSNTILHLA------------------------------------   43 (140)
Q Consensus         2 ~~~l~~a~~~g~--~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A------------------------------------   43 (140)
                      .||||.|++.|+  .++++.|++.|+++  +..+..|+||||+|                                    
T Consensus       213 ~TPLH~Aa~~g~~~~eIVklLLe~GADV--N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~  290 (764)
T PHA02716        213 ITPLHTYLITGNVCASVIKKIIELGGDM--DMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYIT  290 (764)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHH
Confidence            479999999995  48999999999887  67889999999975                                    


Q ss_pred             -HhhCcHHHHHHHHhhCCcccCCCCCCCCCC-------------------CchhhhhccccCCCcHHHHHHH--------
Q 038923           44 -SRYEHEELALEILKLCPEMLAAPNDKFETP-------------------TDSWVVHMMNRNKESALYVAYE--------   95 (140)
Q Consensus        44 -~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~t~l~~A~~--------   95 (140)
                       +..|+.+++++|++.|++ ++.+|..|.||                   ..+..++.++..|+||||+|+.        
T Consensus       291 AA~~g~leiVklLLe~GAd-IN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~l  369 (764)
T PHA02716        291 LARNIDISVVYSFLQPGVK-LHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNIL  369 (764)
T ss_pred             HHHcCCHHHHHHHHhCCCc-eeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccc
Confidence             445788999999999998 68889999999                   2344567889999999999875        


Q ss_pred             ------cCCHHHHHHHHcCCCccccccCCCCChHHHHH----HHcCCHHHHhhhC
Q 038923           96 ------RGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVA----ASAGHLGTFANLV  140 (140)
Q Consensus        96 ------~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A----~~~g~~~~~~~Ll  140 (140)
                            .++.+++++|++.|++++.++..|.| |||.+    ...++.+++++|+
T Consensus       370 d~~~~~~~~~eVVklLL~~GADIn~kn~~G~T-PLh~y~~~a~n~~~~dIvklLi  423 (764)
T PHA02716        370 DPETDNDIRLDVIQCLISLGADITAVNCLGYT-PLTSYICTAQNYMYYDIIDCLI  423 (764)
T ss_pred             cccccccChHHHHHHHHHCCCCCCCcCCCCCC-hHHHHHHHHHhcChHHHHHHHH
Confidence                  36899999999999999999999999 99942    2356788988874

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.89  E-value=1.6e-22  Score=112.58  Aligned_cols=89  Identities=24%  Similarity=0.275  Sum_probs=78.4

Q ss_pred             HHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhcccc
Q 038923            5 LFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNR   84 (140)
Q Consensus         5 l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (140)
                      ||.|++.|+.++++.|++.+.+.  +.    |.||||+|+..|+.+++++|++.|.++                 +.++.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~--~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~-----------------~~~~~   57 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI--NL----GNTALHYAAENGNLEIVKLLLENGADI-----------------NSQDK   57 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT--TS----SSBHHHHHHHTTTHHHHHHHHHTTTCT-----------------T-BST
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC--CC----CCCHHHHHHHcCCHHHHHHHHHhcccc-----------------cccCC
Confidence            78999999999999999976555  22    889999999999999999999999986                 67889


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHcCCCcccccc
Q 038923           85 NKESALYVAYERGRHDVVKQLLNYPSVSLLEM  116 (140)
Q Consensus        85 ~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~  116 (140)
                      .|+||||+|+.+|+.+++++|+++|++++.+|
T Consensus        58 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   58 NGNTALHYAAENGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             TSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            99999999999999999999999999988764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.89  E-value=3.4e-22  Score=146.27  Aligned_cols=133  Identities=15%  Similarity=0.088  Sum_probs=103.3

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC---------
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP---------   73 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~---------   73 (140)
                      +.++.|+..|+.++++.|++.+.++  +..+..|.||||+|+..|+.+++++|++.|++ ++..+..|.+|         
T Consensus       147 ~~l~~~i~~~~~~i~k~Ll~~Gadv--n~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad-~n~~~~~g~t~L~~A~~~~~  223 (682)
T PHA02876        147 KLIKERIQQDELLIAEMLLEGGADV--NAKDIYCITPIHYAAERGNAKMVNLLLSYGAD-VNIIALDDLSVLECAVDSKN  223 (682)
T ss_pred             HHHHHHHHCCcHHHHHHHHhCCCCC--CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-cCccCCCCCCHHHHHHHcCC
Confidence            4577888888888888888888776  66778888999999999999999999888887 56677777777         


Q ss_pred             -------------------------------------CchhhhhccccCCCcHHHHHHHcCCH-HHHHHHHcCCCccccc
Q 038923           74 -------------------------------------TDSWVVHMMNRNKESALYVAYERGRH-DVVKQLLNYPSVSLLE  115 (140)
Q Consensus        74 -------------------------------------~~~~~~~~~~~~~~t~l~~A~~~~~~-~~~~~L~~~~~~~~~~  115 (140)
                                                           ..+..++..+..|.||||+|+..|+. +++++|++.|++++..
T Consensus       224 ~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~  303 (682)
T PHA02876        224 IDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAK  303 (682)
T ss_pred             HHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCc
Confidence                                                 00112345566788888888888875 4788888888888888


Q ss_pred             cCCCCChHHHHHHHcC-CHHHHhhh
Q 038923          116 MDDGLTTSLHVAASAG-HLGTFANL  139 (140)
Q Consensus       116 ~~~~~t~~l~~A~~~g-~~~~~~~L  139 (140)
                      +..|.| |||+|+..| +.++++.|
T Consensus       304 d~~g~T-pLh~Aa~~g~~~~~v~~L  327 (682)
T PHA02876        304 NIKGET-PLYLMAKNGYDTENIRTL  327 (682)
T ss_pred             CCCCCC-HHHHHHHhCCCHHHHHHH
Confidence            888888 888888888 47777665

>PHA02946 ankyin-like protein; Provisional

Probab=99.89  E-value=3.3e-22  Score=139.80  Aligned_cols=133  Identities=15%  Similarity=0.133  Sum_probs=109.7

Q ss_pred             HHHHHHH--HcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCC------
Q 038923            3 ERLFETI--LKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPT------   74 (140)
Q Consensus         3 ~~l~~a~--~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~------   74 (140)
                      +.||.++  ..++.+.++.|++.+.++  +..+..|.||||+|+..|+.+++++|+++|++ ++.+|.+|.||.      
T Consensus        39 ~~Lh~~~~~~~~~~~iv~~Ll~~Gadv--n~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAd-in~~d~~g~TpLh~A~~~  115 (446)
T PHA02946         39 HILHAYCGIKGLDERFVEELLHRGYSP--NETDDDGNYPLHIASKINNNRIVAMLLTHGAD-PNACDKQHKTPLYYLSGT  115 (446)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHCcCCC--CccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHc
Confidence            4677655  455788999999998887  67889999999999999999999999999998 678899999991      


Q ss_pred             -------------chhhhh-ccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCC--HHHHhh
Q 038923           75 -------------DSWVVH-MMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGH--LGTFAN  138 (140)
Q Consensus        75 -------------~~~~~~-~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~--~~~~~~  138 (140)
                                   .++.++ ..+..|.|||+ |+..|+.+++++|++.|++++.++..|+| |||+|+..++  .+++++
T Consensus       116 ~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t-~Lh~A~~~~~~~~~~v~~  193 (446)
T PHA02946        116 DDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKN-HIHRHLMSDNPKASTISW  193 (446)
T ss_pred             CCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCC-HHHHHHHhcCCCHHHHHH
Confidence                         122233 35778899997 66778999999999999999999999999 9999887554  577877


Q ss_pred             hC
Q 038923          139 LV  140 (140)
Q Consensus       139 Ll  140 (140)
                      |+
T Consensus       194 Ll  195 (446)
T PHA02946        194 MM  195 (446)
T ss_pred             HH
Confidence            63

>PHA03095 ankyrin-like protein; Provisional

Probab=99.88  E-value=3.2e-22  Score=141.00  Aligned_cols=118  Identities=14%  Similarity=0.036  Sum_probs=69.6

Q ss_pred             CHHHHHHHHcC---CHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhC-cHHHHHHHHhhCCcccCCCCCCCCCCCchh
Q 038923            2 DERLFETILKG---DVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYE-HEELALEILKLCPEMLAAPNDKFETPTDSW   77 (140)
Q Consensus         2 ~~~l~~a~~~g---~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g-~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~   77 (140)
                      .||||.|+..|   +.+.++.|++.+.++  +..+..|.||||+|+..| +.+++++|++.|++ +              
T Consensus        48 ~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi--n~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~-i--------------  110 (471)
T PHA03095         48 KTPLHLYLHYSSEKVKDIVRLLLEAGADV--NAPERCGFTPLHLYLYNATTLDVIKLLIKAGAD-V--------------  110 (471)
T ss_pred             CCHHHHHHHhcCCChHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCC-C--------------
Confidence            35777777776   777777777776665  555667777777777777 47777777777776 3              


Q ss_pred             hhhccccCCCcHHHHHH--HcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcC--CHHHHhhh
Q 038923           78 VVHMMNRNKESALYVAY--ERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAG--HLGTFANL  139 (140)
Q Consensus        78 ~~~~~~~~~~t~l~~A~--~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g--~~~~~~~L  139 (140)
                        +.++..|.||||+|+  ..++.+++++|++.|++++..+..|.| |||+|+..+  +.+++++|
T Consensus       111 --n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~t-pL~~a~~~~~~~~~iv~~L  173 (471)
T PHA03095        111 --NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMT-PLAVLLKSRNANVELLRLL  173 (471)
T ss_pred             --CCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCC-HHHHHHHcCCCCHHHHHHH
Confidence              344444555555555  233445555555555555555545555 555544433  23444443

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=4.2e-23  Score=135.97  Aligned_cols=112  Identities=27%  Similarity=0.245  Sum_probs=98.6

Q ss_pred             HhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC---------------------Cchhhhhccc-cC
Q 038923           28 IKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP---------------------TDSWVVHMMN-RN   85 (140)
Q Consensus        28 ~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~-~~   85 (140)
                      ..++-|..|+|+|||++..+++++|+.||..|.-..+.++..|+||                     ..-..+|.+- ..
T Consensus       260 vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~  339 (452)
T KOG0514|consen  260 VVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQH  339 (452)
T ss_pred             HhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhh
Confidence            5578889999999999999999999999999986689999999999                     1111234433 46


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           86 KESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        86 ~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      |.|+|++|+.+|+.++++.|+..|+|+|.+|.+|.| +|++|+.+||.|++++||
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGST-ALMCA~EHGhkEivklLL  393 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGADVNIQDDDGST-ALMCAAEHGHKEIVKLLL  393 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCCCccccCCccH-HHhhhhhhChHHHHHHHh
Confidence            899999999999999999999999999999999999 999999999999999986

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.88  E-value=5.8e-22  Score=145.04  Aligned_cols=125  Identities=15%  Similarity=0.117  Sum_probs=91.2

Q ss_pred             HHHHHHHHc-CCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            3 ERLFETILK-GDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         3 ~~l~~a~~~-g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      ||||.|+.. ++.+.++.|++.+.++  +..+..|.||||+|+..|+.+++++|++.|++ ++..+..|.||        
T Consensus       343 TpLh~A~~~~~~~~iv~lLl~~gadi--n~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad-~~~~~~~g~T~Lh~A~~~~  419 (682)
T PHA02876        343 TPLHQASTLDRNKDIVITLLELGANV--NARDYCDKTPIHYAAVRNNVVIINTLLDYGAD-IEALSQKIGTALHFALCGT  419 (682)
T ss_pred             cHHHHHHHhCCcHHHHHHHHHcCCCC--ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-ccccCCCCCchHHHHHHcC
Confidence            466666654 3455556666665555  55677788888888888888888888888877 56666777777        


Q ss_pred             ----------CchhhhhccccCCCcHHHHHHHcC-CHHHHHHHHcCCCccccccCCCCChHHHHHHHcC
Q 038923           74 ----------TDSWVVHMMNRNKESALYVAYERG-RHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAG  131 (140)
Q Consensus        74 ----------~~~~~~~~~~~~~~t~l~~A~~~~-~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g  131 (140)
                                ..+..++.++..|+||||+|+..| +.+++++|++.|++++..+..|.| |++.|+.++
T Consensus       420 ~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~t-pl~~a~~~~  487 (682)
T PHA02876        420 NPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQY-PLLIALEYH  487 (682)
T ss_pred             CHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCC-HHHHHHHhC
Confidence                      123345677788888888888766 578888888888888888888888 888887654

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.87  E-value=2.9e-22  Score=148.83  Aligned_cols=118  Identities=22%  Similarity=0.235  Sum_probs=104.7

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhcc
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMM   82 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (140)
                      +++|.|...+....++.+++.+...  +..+..|+||||+||.+|++.+|++|+++|+++                 +.+
T Consensus       509 ~~lhla~~~~~v~~~~~l~~~ga~v--~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv-----------------~ak  569 (1143)
T KOG4177|consen  509 TPLHLAADEDTVKVAKILLEHGANV--DLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADV-----------------NAK  569 (1143)
T ss_pred             chhhhhhhhhhHHHHHHHhhcCCce--ehhcccccchHHHHHhcCCchHHHHhhhCCccc-----------------ccc
Confidence            4567777777777777777776655  456778999999999999999999999999987                 788


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           83 NRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        83 ~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      ++.|+||||.||..|+.++++.|+++|++++..+.+|.| ||++|+..|+.++++.|+
T Consensus       570 ~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~T-pL~iA~~lg~~~~~k~l~  626 (1143)
T KOG4177|consen  570 DKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFT-PLHIAVRLGYLSVVKLLK  626 (1143)
T ss_pred             CCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcc-hhHHHHHhcccchhhHHH
Confidence            899999999999999999999999999999999999999 999999999999998763

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.87  E-value=3e-22  Score=124.20  Aligned_cols=116  Identities=19%  Similarity=0.174  Sum_probs=100.6

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhc
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHM   81 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   81 (140)
                      .|||.+|++.|+++.|+.|++.++++  +...+...++|.+|++.|..++|++|+.++.++                 |.
T Consensus       161 fTpLiWAaa~G~i~vV~fLL~~GAdp--~~lgk~resALsLAt~ggytdiV~lLL~r~vdV-----------------Nv  221 (296)
T KOG0502|consen  161 FTPLIWAAAKGHIPVVQFLLNSGADP--DALGKYRESALSLATRGGYTDIVELLLTREVDV-----------------NV  221 (296)
T ss_pred             chHhHHHHhcCchHHHHHHHHcCCCh--hhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCc-----------------ce
Confidence            36888888888888888888888777  556667778888888888888888888888876                 78


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhh
Q 038923           82 MNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFAN  138 (140)
Q Consensus        82 ~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~  138 (140)
                      .|.+|-|||-+|++.|+.+|++.|++.|+++...++.|.+ ++..|+..|+. +|+.
T Consensus       222 yDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~-~mdlAValGyr-~Vqq  276 (296)
T KOG0502|consen  222 YDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYW-IMDLAVALGYR-IVQQ  276 (296)
T ss_pred             eccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCc-HHHHHHHhhhH-HHHH
Confidence            8999999999999999999999999999999999999999 99999999987 4443

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.87  E-value=2.2e-21  Score=137.47  Aligned_cols=136  Identities=10%  Similarity=-0.012  Sum_probs=92.9

Q ss_pred             CHHHHHHHHcC------CHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhh---CcHHHHHHHHhhCCcccCCCCCCCCC
Q 038923            2 DERLFETILKG------DVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRY---EHEELALEILKLCPEMLAAPNDKFET   72 (140)
Q Consensus         2 ~~~l~~a~~~g------~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~~~~   72 (140)
                      +||||.|+..+      ..++++.|++.|+++  +..+..|.||||.|+..   |+.+++++|+++|+++.+.+|..|.|
T Consensus        70 ~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadi--n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~t  147 (494)
T PHA02989         70 ETPLCAVLRNREITSNKIKKIVKLLLKFGADI--NLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYN  147 (494)
T ss_pred             CCcHHHHHhccCcchhhHHHHHHHHHHCCCCC--CCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCC
Confidence            46777776654      356777788877776  56677788888876554   56788888888888743677777888


Q ss_pred             C-------------------Cchhhhhc-cccCCCcHHHHHHHcC----CHHHHHHHHcCCCccccc-------------
Q 038923           73 P-------------------TDSWVVHM-MNRNKESALYVAYERG----RHDVVKQLLNYPSVSLLE-------------  115 (140)
Q Consensus        73 ~-------------------~~~~~~~~-~~~~~~t~l~~A~~~~----~~~~~~~L~~~~~~~~~~-------------  115 (140)
                      |                   ..+..++. .+..|.||||.|+..+    +.+++++|++.|++++..             
T Consensus       148 pLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~  227 (494)
T PHA02989        148 LLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLD  227 (494)
T ss_pred             HHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHH
Confidence            7                   11222333 4556778888776543    777788887777665433             


Q ss_pred             -------------------------cCCCCChHHHHHHHcCCHHHHhhhC
Q 038923          116 -------------------------MDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       116 -------------------------~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                                               +..|+| |||+|+..|+.+++++|+
T Consensus       228 ~~~~~~~~~~~il~~l~~~advn~~d~~G~T-pL~~Aa~~~~~~~v~~LL  276 (494)
T PHA02989        228 NNKILSKKEFKVLNFILKYIKINKKDKKGFN-PLLISAKVDNYEAFNYLL  276 (494)
T ss_pred             hchhhcccchHHHHHHHhCCCCCCCCCCCCC-HHHHHHHhcCHHHHHHHH
Confidence                                     334777 888888888888888764

>PHA02917 ankyrin-like protein; Provisional

Probab=99.86  E-value=4e-21  Score=139.31  Aligned_cols=129  Identities=14%  Similarity=-0.016  Sum_probs=99.1

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHH--HhhCcHHHHHHHHhhCCcccCCCC---CCCCCCCchh
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLA--SRYEHEELALEILKLCPEMLAAPN---DKFETPTDSW   77 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A--~~~g~~~~~~~Ll~~~~~~~~~~~---~~~~~~~~~~   77 (140)
                      .+++.|+..|+.++++.|++.+.++  +..+..|.||||.|  +..|+.+++++|+++|+++ +.+|   ..|.+.    
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~Gadi--n~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~v-n~~d~~~~~g~~~----  177 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEHGFDL--SVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSV-LYEDEDDEYGYAY----  177 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHcCCCC--CccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCc-ccccccccccccc----
Confidence            3456788888888888888888777  66778899999854  3578899999999998874 2222   112111    


Q ss_pred             hhhccccCCCcHHHHHHH-----------cCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCH--HHHhhhC
Q 038923           78 VVHMMNRNKESALYVAYE-----------RGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL--GTFANLV  140 (140)
Q Consensus        78 ~~~~~~~~~~t~l~~A~~-----------~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~--~~~~~Ll  140 (140)
                       .......+.||||+|+.           +++.+++++|++.|++++.++..|.| |||+|+..|+.  |++++|+
T Consensus       178 -~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~T-pLh~A~~~g~~~~eivk~Li  251 (661)
T PHA02917        178 -DDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCT-ALQYYIKSSHIDIDIVKLLM  251 (661)
T ss_pred             -ccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCc-HHHHHHHcCCCcHHHHHHHH
Confidence             01123345799999986           46899999999999999999999999 99999999985  7999874

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.85  E-value=4.7e-20  Score=108.06  Aligned_cols=119  Identities=26%  Similarity=0.320  Sum_probs=108.5

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhc
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHM   81 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   81 (140)
                      .++||.|++.|+.+.++.|++.+...  ...+..|.+|+|+|+..+..+++++|++.+...                 +.
T Consensus         8 ~t~l~~a~~~~~~~~i~~li~~~~~~--~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-----------------~~   68 (126)
T cd00204           8 RTPLHLAASNGHLEVVKLLLENGADV--NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-----------------NA   68 (126)
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCC--CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-----------------cc
Confidence            47999999999999999999987765  457789999999999999999999999999754                 55


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           82 MNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        82 ~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      .+..+.+|+|+|+..++.+++++|++.+.+.+..+..+.| |++.|...++.+++++|+
T Consensus        69 ~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          69 RDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRT-PLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCC-HHHHHHhcCCHHHHHHhC
Confidence            6788899999999999999999999999888889989999 999999999999999985

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.85  E-value=2.4e-21  Score=144.05  Aligned_cols=135  Identities=26%  Similarity=0.163  Sum_probs=113.5

Q ss_pred             CHHHHHHHHcC-CHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC-------
Q 038923            2 DERLFETILKG-DVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP-------   73 (140)
Q Consensus         2 ~~~l~~a~~~g-~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~-------   73 (140)
                      .|++|.|+..| ..+....++..+..+  +....+|.||||+|++.||.++++.+++.++. .......+.++       
T Consensus       441 ~T~lhvaa~~g~~~~~~~~l~~~g~~~--n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~-~~~~~~~~l~~lhla~~~  517 (1143)
T KOG4177|consen  441 YTPLHVAAKKGRYLQIARLLLQYGADP--NAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAN-DNLDAKKGLTPLHLAADE  517 (1143)
T ss_pred             CChhhhhhhcccHhhhhhhHhhcCCCc--chhccccCcchhhhhccCCchHHHHhhhcCCc-cCccchhccchhhhhhhh
Confidence            36889999999 566666666666555  66778899999999999999999999988864 45555566666       


Q ss_pred             ----------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           74 ----------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 ----------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                                ..+..++.++..+.||||.||.+|+.++|++|+++|++++.++..|+| |||.|+..|+.+++++|+
T Consensus       518 ~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~T-PLH~Aa~~G~~~i~~LLl  593 (1143)
T KOG4177|consen  518 DTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYT-PLHQAAQQGHNDIAELLL  593 (1143)
T ss_pred             hhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCC-hhhHHHHcChHHHHHHHH
Confidence                      345556778888999999999999999999999999999999999999 999999999999999884

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.85  E-value=1e-20  Score=105.33  Aligned_cols=79  Identities=29%  Similarity=0.352  Sum_probs=72.7

Q ss_pred             HHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCC
Q 038923           40 LHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDG  119 (140)
Q Consensus        40 l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~  119 (140)
                      ||+|++.|+.+++++|++.+.+.                 +.    |.||+|+|+..|+.+++++|++.|++++.++..|
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-----------------~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g   59 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-----------------NL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNG   59 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-----------------TS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTS
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-----------------CC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCC
Confidence            79999999999999999988764                 22    8899999999999999999999999999999999


Q ss_pred             CChHHHHHHHcCCHHHHhhhC
Q 038923          120 LTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       120 ~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      +| |||+|+.+|+.+++++|+
T Consensus        60 ~t-~L~~A~~~~~~~~~~~Ll   79 (89)
T PF12796_consen   60 NT-ALHYAAENGNLEIVKLLL   79 (89)
T ss_dssp             SB-HHHHHHHTTHHHHHHHHH
T ss_pred             CC-HHHHHHHcCCHHHHHHHH
Confidence            99 999999999999999984

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02798 ankyrin-like protein; Provisional

Probab=99.85  E-value=1.1e-20  Score=133.87  Aligned_cols=111  Identities=14%  Similarity=0.153  Sum_probs=81.7

Q ss_pred             HHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhh-----CcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccc
Q 038923            9 ILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRY-----EHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMN   83 (140)
Q Consensus         9 ~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~-----g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (140)
                      ...++.++++.|++.|.++  +..+..|.||||.|+..     ++.+++++|++.|+++                 +.++
T Consensus        46 ~~~~~~~iv~~Ll~~Gadv--n~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi-----------------N~~d  106 (489)
T PHA02798         46 RDSPSTDIVKLFINLGANV--NGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADI-----------------NKKN  106 (489)
T ss_pred             CCCCCHHHHHHHHHCCCCC--CCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCC-----------------CCCC
Confidence            3345789999999998877  66788899999998753     6789999999999985                 5566


Q ss_pred             cCCCcHHHHHHHcC---CHHHHHHHHcCCCccccccCCCCChHHHHHHHcCC---HHHHhhh
Q 038923           84 RNKESALYVAYERG---RHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGH---LGTFANL  139 (140)
Q Consensus        84 ~~~~t~l~~A~~~~---~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~---~~~~~~L  139 (140)
                      ..|.||||+|+..+   +.+++++|++.|++++..+..|.| |||+|+..|+   .+++++|
T Consensus       107 ~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~t-pL~~a~~~~~~~~~~vv~~L  167 (489)
T PHA02798        107 SDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFT-MLQVYLQSNHHIDIEIIKLL  167 (489)
T ss_pred             CCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCc-HHHHHHHcCCcchHHHHHHH
Confidence            66666666666654   566666666666666666666666 6666666665   6666655

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.85  E-value=4e-21  Score=131.63  Aligned_cols=135  Identities=21%  Similarity=0.176  Sum_probs=115.1

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      .|++|.++...+.++|+++++.++.+  +..|..||||||.|+..||..++++|++.|++ ....+.+|..|        
T Consensus        74 lTalhq~~id~~~e~v~~l~e~ga~V--n~~d~e~wtPlhaaascg~~~i~~~li~~gA~-~~avNsdg~~P~dl~e~ea  150 (527)
T KOG0505|consen   74 LTALHQACIDDNLEMVKFLVENGANV--NAQDNEGWTPLHAAASCGYLNIVEYLIQHGAN-LLAVNSDGNMPYDLAEDEA  150 (527)
T ss_pred             chhHHHHHhcccHHHHHHHHHhcCCc--cccccccCCcchhhcccccHHHHHHHHHhhhh-hhhccCCCCCccccccCcc
Confidence            36899999999999999999998888  66788899999999999999999999999987 56666677666        


Q ss_pred             -----------------------------------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCC
Q 038923           74 -----------------------------------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDD  118 (140)
Q Consensus        74 -----------------------------------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~  118 (140)
                                                         ..+.........|.|.||.|+..|-.++.++|+..|.+++.+|.+
T Consensus       151 ~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~d  230 (527)
T KOG0505|consen  151 TLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYD  230 (527)
T ss_pred             hhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCccccccc
Confidence                                               122223344455899999999999999999999999999999999


Q ss_pred             CCChHHHHHHHcCCHHHHhhhC
Q 038923          119 GLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       119 ~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      ||| |||.|+.=|+.+++++|+
T Consensus       231 gWt-PlHAAA~Wg~~~~~elL~  251 (527)
T KOG0505|consen  231 GWT-PLHAAAHWGQEDACELLV  251 (527)
T ss_pred             CCC-cccHHHHhhhHhHHHHHH
Confidence            999 999999999999998763

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.84  E-value=3.3e-21  Score=119.61  Aligned_cols=115  Identities=21%  Similarity=0.142  Sum_probs=99.1

Q ss_pred             HHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccc
Q 038923            4 RLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMN   83 (140)
Q Consensus         4 ~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (140)
                      ++..++.+.+++.+..+.+.  ..  +..|+.|+|||.||+.+|++++|++|++.|+++                 ....
T Consensus       132 ~~slsVhql~L~~~~~~~~n--~V--N~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp-----------------~~lg  190 (296)
T KOG0502|consen  132 PLSLSVHQLHLDVVDLLVNN--KV--NACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP-----------------DALG  190 (296)
T ss_pred             hhhHHHHHHHHHHHHHHhhc--cc--cCccccCchHhHHHHhcCchHHHHHHHHcCCCh-----------------hhhh
Confidence            45556655555555444433  33  568899999999999999999999999999986                 5677


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           84 RNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        84 ~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      ....++|.+|+..|..++++.|+.++.+++..|.+|.| ||.+|++.+|..|++.|+
T Consensus       191 k~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgT-pLlyAvrgnhvkcve~Ll  246 (296)
T KOG0502|consen  191 KYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGT-PLLYAVRGNHVKCVESLL  246 (296)
T ss_pred             hhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCc-eeeeeecCChHHHHHHHH
Confidence            88899999999999999999999999999999999999 999999999999999885

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.84  E-value=1.2e-20  Score=121.62  Aligned_cols=105  Identities=19%  Similarity=0.251  Sum_probs=82.8

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhcc
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMM   82 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (140)
                      +|||+|++.|+...++.|+.++...  +..+....||||+|+..||.++|+.|++..+++                 |..
T Consensus        36 splhwaakegh~aivemll~rgarv--n~tnmgddtplhlaaahghrdivqkll~~kadv-----------------nav   96 (448)
T KOG0195|consen   36 SPLHWAAKEGHVAIVEMLLSRGARV--NSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADV-----------------NAV   96 (448)
T ss_pred             chhhhhhhcccHHHHHHHHhccccc--ccccCCCCcchhhhhhcccHHHHHHHHHHhccc-----------------chh
Confidence            4788888888888888888887776  555666678888888888888888888887776                 677


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHH
Q 038923           83 NRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVA  127 (140)
Q Consensus        83 ~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A  127 (140)
                      +..|.||||+||..|.-.+.+-|+..|+.++..+..|.| |+..|
T Consensus        97 nehgntplhyacfwgydqiaedli~~ga~v~icnk~g~t-pldka  140 (448)
T KOG0195|consen   97 NEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMT-PLDKA  140 (448)
T ss_pred             hccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCC-chhhh
Confidence            888888888888888888888888888888888878888 77665

>PHA02741 hypothetical protein; Provisional

Probab=99.83  E-value=6.6e-20  Score=113.33  Aligned_cols=98  Identities=13%  Similarity=0.136  Sum_probs=81.5

Q ss_pred             cCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCC----HHHHHHHH
Q 038923           31 TVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGR----HDVVKQLL  106 (140)
Q Consensus        31 ~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~----~~~~~~L~  106 (140)
                      ..+..|.||||+|++.|+.++++.|+.......           .+..++.++..|.||||+|+..|+    .+++++|+
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~-----------~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll   84 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDC-----------HAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLI   84 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccch-----------hhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHH
Confidence            456789999999999999999999875421000           011126788899999999999998    58899999


Q ss_pred             cCCCccccccC-CCCChHHHHHHHcCCHHHHhhhC
Q 038923          107 NYPSVSLLEMD-DGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       107 ~~~~~~~~~~~-~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      ..|++++.++. .|.| |||+|+..++.+++++|+
T Consensus        85 ~~gadin~~~~~~g~T-pLh~A~~~~~~~iv~~Ll  118 (169)
T PHA02741         85 ELGADINAQEMLEGDT-ALHLAAHRRDHDLAEWLC  118 (169)
T ss_pred             HcCCCCCCCCcCCCCC-HHHHHHHcCCHHHHHHHH
Confidence            99999999885 8999 999999999999999875

>PHA02792 ankyrin-like protein; Provisional

Probab=99.83  E-value=4.3e-20  Score=131.36  Aligned_cols=133  Identities=12%  Similarity=0.005  Sum_probs=114.2

Q ss_pred             HHH-HHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHh-hCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            4 RLF-ETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASR-YEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         4 ~l~-~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~-~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      ++| .|...|++|.++.|+++|++.  +..+..+.+|+|+|+. .++.|++++|++.|++ ....+..|.+|        
T Consensus        74 ~~~~~~s~n~~lElvk~LI~~GAdv--N~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad-~~~~~~~g~~~~~~~~~~~  150 (631)
T PHA02792         74 IFEYLCSDNIDIELLKLLISKGLEI--NSIKNGINIVEKYATTSNPNVDVFKLLLDKGIP-TCSNIQYGYKIIIEQITRA  150 (631)
T ss_pred             HHHHHHHhcccHHHHHHHHHcCCCc--ccccCCCCcceeEeecCCCChHHHHHHHHCCCC-cccccccCcchhhhhcccc
Confidence            454 567789999999999999887  5667778999999966 6999999999999998 56777888887        


Q ss_pred             ------------CchhhhhccccCCCcHHHHHHHcC-------CHHHHHHHHcCCCccccccCCCCChHHHHHHHcC--C
Q 038923           74 ------------TDSWVVHMMNRNKESALYVAYERG-------RHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAG--H  132 (140)
Q Consensus        74 ------------~~~~~~~~~~~~~~t~l~~A~~~~-------~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g--~  132 (140)
                                  ...-.++..+..|.||||+|+..+       ..++++.|+++|++++..+..|.| |||.|+.+.  .
T Consensus       151 ~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t-~l~~~~~~~~i~  229 (631)
T PHA02792        151 EYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHT-TLYYYVDKCDIK  229 (631)
T ss_pred             cccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCCh-HHHHHHHcccch
Confidence                        111234677888999999999999       899999999999999999999999 999999999  7


Q ss_pred             HHHHhhhC
Q 038923          133 LGTFANLV  140 (140)
Q Consensus       133 ~~~~~~Ll  140 (140)
                      .|++++|+
T Consensus       230 ~ei~~~L~  237 (631)
T PHA02792        230 REIFDALF  237 (631)
T ss_pred             HHHHHHHH
Confidence            89999874

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.82  E-value=1.9e-20  Score=123.52  Aligned_cols=118  Identities=22%  Similarity=0.253  Sum_probs=98.1

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhch-HHHhhcCC--------------------------------------CCCCcHHHH
Q 038923            2 DERLFETILKGDVPNFLNLVHEDE-AIIKQTVP--------------------------------------GSSNTILHL   42 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~-~~~~~~~~--------------------------------------~~g~t~l~~   42 (140)
                      +|+||+++..+++++|+.||+.+- +.  +..+                                      ..|.|+|++
T Consensus       269 NTALHYsVSHaNF~VV~~LLDSgvC~V--D~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTALML  346 (452)
T KOG0514|consen  269 NTALHYAVSHANFDVVSILLDSGVCDV--DQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTALML  346 (452)
T ss_pred             CeeeeeeecccchHHHHHHhccCcccc--cccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchhhhh
Confidence            478999999999999999988652 22  2222                                      346667777


Q ss_pred             HHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcC-CCccccccCCCCC
Q 038923           43 ASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNY-PSVSLLEMDDGLT  121 (140)
Q Consensus        43 A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~-~~~~~~~~~~~~t  121 (140)
                      |+..|+.++++.||..|+++                 |.+|.+|.|+|+.||.+||.++++.|+.. +++....|.+|.|
T Consensus       347 AVSHGr~d~vk~LLacgAdV-----------------NiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgST  409 (452)
T KOG0514|consen  347 AVSHGRVDMVKALLACGADV-----------------NIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGST  409 (452)
T ss_pred             hhhcCcHHHHHHHHHccCCC-----------------ccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCch
Confidence            77777777777777777776                 89999999999999999999999999964 6999999999999


Q ss_pred             hHHHHHHHcCCHHHHhhh
Q 038923          122 TSLHVAASAGHLGTFANL  139 (140)
Q Consensus       122 ~~l~~A~~~g~~~~~~~L  139 (140)
                       +|.+|-..||.||.-+|
T Consensus       410 -Al~IAleagh~eIa~ml  426 (452)
T KOG0514|consen  410 -ALSIALEAGHREIAVML  426 (452)
T ss_pred             -hhhhHHhcCchHHHHHH
Confidence             99999999999987654

>PHA02730 ankyrin-like protein; Provisional

Probab=99.82  E-value=1.6e-19  Score=129.56  Aligned_cols=124  Identities=11%  Similarity=0.076  Sum_probs=99.0

Q ss_pred             CHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCc----HHHHHHHHhhCCc-ccCCCCCCCCCCC-------------
Q 038923           13 DVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEH----EELALEILKLCPE-MLAAPNDKFETPT-------------   74 (140)
Q Consensus        13 ~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~----~~~~~~Ll~~~~~-~~~~~~~~~~~~~-------------   74 (140)
                      +++.++.|+++|++.  +.. ..|.||||+|+..++    .+++++|+++|++ ..+.+|..|.||.             
T Consensus       358 ~ieIvelLIs~GAdI--N~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~  434 (672)
T PHA02730        358 SIPILRCMLDNGATM--DKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGY  434 (672)
T ss_pred             cHHHHHHHHHCCCCC--CcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccc
Confidence            578888888888776  333 578888888877764    7888888888763 3566677777751             


Q ss_pred             ----------------chhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccC-CCCChHHHHHHHc--CCHHH
Q 038923           75 ----------------DSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMD-DGLTTSLHVAASA--GHLGT  135 (140)
Q Consensus        75 ----------------~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~-~~~t~~l~~A~~~--g~~~~  135 (140)
                                      .++.++.+|..|.||||+|+..++.+++++|+++|++++..+. .|.| |+|.|+..  ++.++
T Consensus       435 ~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~T-aL~~Aa~~~~~~~eI  513 (672)
T PHA02730        435 HCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINT-AIQKSSYRRENKTKL  513 (672)
T ss_pred             cccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcC-HHHHHHHhhcCcHHH
Confidence                            1224688899999999999999999999999999999999996 4888 99999884  78999


Q ss_pred             HhhhC
Q 038923          136 FANLV  140 (140)
Q Consensus       136 ~~~Ll  140 (140)
                      ++.|+
T Consensus       514 v~~LL  518 (672)
T PHA02730        514 VDLLL  518 (672)
T ss_pred             HHHHH
Confidence            98874

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.82  E-value=1.5e-19  Score=97.85  Aligned_cols=104  Identities=17%  Similarity=0.210  Sum_probs=90.4

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhcc
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMM   82 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (140)
                      -.+.+++++|.++.|+..+..+-+.. ..  ..|.+|||||+-+|+.++++||+..|+++                 +.+
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn-~~--~ggR~plhyAAD~GQl~ilefli~iGA~i-----------------~~k   63 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVN-EI--YGGRTPLHYAADYGQLSILEFLISIGANI-----------------QDK   63 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHH-HH--hCCcccchHhhhcchHHHHHHHHHhcccc-----------------CCc
Confidence            45778999999999999998874442 22  47899999999999999999999999986                 678


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHH
Q 038923           83 NRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVA  127 (140)
Q Consensus        83 ~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A  127 (140)
                      |..|.|||..|+..||.++|++|++.|++-.....+|.+ .+..+
T Consensus        64 DKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~-~~eat  107 (117)
T KOG4214|consen   64 DKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTA-LIEAT  107 (117)
T ss_pred             cccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchh-HHhhc
Confidence            999999999999999999999999999998888877777 55443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.81  E-value=2.2e-19  Score=110.67  Aligned_cols=101  Identities=22%  Similarity=0.223  Sum_probs=88.1

Q ss_pred             CHHHHHHHHcCCHHH---HHHHhhhchHHHhhcCC-CCCCcHHHHHHhhCcHHHHHHHHh-hCCcccCCCCCCCCCCCch
Q 038923            2 DERLFETILKGDVPN---FLNLVHEDEAIIKQTVP-GSSNTILHLASRYEHEELALEILK-LCPEMLAAPNDKFETPTDS   76 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~---~~~ll~~~~~~~~~~~~-~~g~t~l~~A~~~g~~~~~~~Ll~-~~~~~~~~~~~~~~~~~~~   76 (140)
                      .|+||+|+..|..+.   ++.|++.+..+  +..+ ..|.||||+|+..|+.+++++|+. .+.++              
T Consensus        58 ~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi--n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~--------------  121 (166)
T PHA02743         58 RQCTHMVAWYDRANAVMKIELLVNMGADI--NARELGTGNTLLHIAASTKNYELAEWLCRQLGVNL--------------  121 (166)
T ss_pred             CcHHHHHHHhCccCHHHHHHHHHHcCCCC--CCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCc--------------
Confidence            379999999998655   78899988776  5566 589999999999999999999995 68775              


Q ss_pred             hhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCC
Q 038923           77 WVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLT  121 (140)
Q Consensus        77 ~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t  121 (140)
                         +.++..|+||||+|+..++.+++++|++.|++++..+..|..
T Consensus       122 ---~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~  163 (166)
T PHA02743        122 ---GAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGLS  163 (166)
T ss_pred             ---cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCcc
Confidence               678899999999999999999999999999999888876653

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.81  E-value=6.6e-20  Score=130.15  Aligned_cols=118  Identities=20%  Similarity=0.202  Sum_probs=109.8

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhcc
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMM   82 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (140)
                      |.||.|+.+|+.+.++.|++..+-+  .+.+..|.+|||+|++.|+.++++.++..+...                 +..
T Consensus        51 Talhha~Lng~~~is~llle~ea~l--dl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~-----------------na~  111 (854)
T KOG0507|consen   51 TLLHHAVLNGQNQISKLLLDYEALL--DLCDTKGILPLHLAAWNGNLEIVKMLLLQTDIL-----------------NAV  111 (854)
T ss_pred             hHHHHHHhcCchHHHHHHhcchhhh--hhhhccCcceEEehhhcCcchHHHHHHhcccCC-----------------Ccc
Confidence            6899999999999999999987766  456689999999999999999999999999654                 778


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           83 NRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        83 ~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      +..|.+|||.|+++|+.+++.+|+.+|+++...+..+.| ++..|++.|..++++.|+
T Consensus       112 ~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t-~ldlA~qfgr~~Vvq~ll  168 (854)
T KOG0507|consen  112 NIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKET-VLDLASRFGRAEVVQMLL  168 (854)
T ss_pred             cccCcCccchhhhhcchHHHHHHHhcCCCccccCccccc-HHHHHHHhhhhHHHHHHh
Confidence            899999999999999999999999999999999999999 999999999999999874

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.81  E-value=2.5e-19  Score=107.57  Aligned_cols=111  Identities=16%  Similarity=0.147  Sum_probs=97.9

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhc
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHM   81 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   81 (140)
                      .||||.|+.+|++++++.|+..++..  ......||||||-||..++.+++.+|+++|+++                 +.
T Consensus        98 YTpLHRAaYn~h~div~~ll~~gAn~--~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDV-----------------nA  158 (228)
T KOG0512|consen   98 YTPLHRAAYNGHLDIVHELLLSGANK--EAKTNEGWTPLHSACKWNNFEVAGRLLQHGADV-----------------NA  158 (228)
T ss_pred             ccHHHHHHhcCchHHHHHHHHccCCc--ccccccCccchhhhhcccchhHHHHHHhccCcc-----------------cc
Confidence            47999999999999999999999887  667889999999999999999999999999997                 77


Q ss_pred             cccCCCcHHHHHHHcCC-HHHHHHHH-cCCCccccccCCCCChHHHHHHHcCC
Q 038923           82 MNRNKESALYVAYERGR-HDVVKQLL-NYPSVSLLEMDDGLTTSLHVAASAGH  132 (140)
Q Consensus        82 ~~~~~~t~l~~A~~~~~-~~~~~~L~-~~~~~~~~~~~~~~t~~l~~A~~~g~  132 (140)
                      .....+||||+||...+ ...+.+|+ ..+..+..++..+.| |+.+|-+.+-
T Consensus       159 ~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eet-a~~iARRT~~  210 (228)
T KOG0512|consen  159 QTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEET-AFDIARRTSM  210 (228)
T ss_pred             cccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccch-HHHHHHHhhh
Confidence            88888999999997665 55678877 567778888888999 9999988754

>PHA02917 ankyrin-like protein; Provisional

Probab=99.80  E-value=4.4e-19  Score=128.82  Aligned_cols=116  Identities=10%  Similarity=0.039  Sum_probs=80.9

Q ss_pred             HHHHHHHHc---CCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHH----HHHHHHhhCCcccCCCCCCCCCCCc
Q 038923            3 ERLFETILK---GDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEE----LALEILKLCPEMLAAPNDKFETPTD   75 (140)
Q Consensus         3 ~~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~----~~~~Ll~~~~~~~~~~~~~~~~~~~   75 (140)
                      ||||.|+..   |+.+.++.|++.+.++  +..+..|+||||+|+.+|+.+    +++.|++.+...             
T Consensus        34 t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v--~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~-------------   98 (661)
T PHA02917         34 NALHAYLFNEHCNNVEVVKLLLDSGTNP--LHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYS-------------   98 (661)
T ss_pred             cHHHHHHHhhhcCcHHHHHHHHHCCCCc--cccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCC-------------
Confidence            566665444   5566666666666555  345566666666666666633    345555443211             


Q ss_pred             hhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHH--HcCCHHHHhhhC
Q 038923           76 SWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAA--SAGHLGTFANLV  140 (140)
Q Consensus        76 ~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~--~~g~~~~~~~Ll  140 (140)
                          +..+  ..++++.|+..|+.+++++|++.|++++.++..|+| |||.|+  ..|+.+++++|+
T Consensus        99 ----n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T-~L~~~~a~~~~~~eivklLi  158 (661)
T PHA02917         99 ----NIND--FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRS-VIENYVMTDDPVPEIIDLFI  158 (661)
T ss_pred             ----CCCC--cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCcc-HHHHHHHccCCCHHHHHHHH
Confidence                1111  236678899999999999999999999999999999 999654  578999999985

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.80  E-value=2.2e-20  Score=120.48  Aligned_cols=116  Identities=20%  Similarity=0.185  Sum_probs=98.0

Q ss_pred             HHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccC
Q 038923            6 FETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRN   85 (140)
Q Consensus         6 ~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (140)
                      +-=|+.|+.-.|+.-++..... ++.-|..|++|||+||..||..+++.|++.|+.+                 |..+..
T Consensus         5 f~wcregna~qvrlwld~tehd-ln~gddhgfsplhwaakegh~aivemll~rgarv-----------------n~tnmg   66 (448)
T KOG0195|consen    5 FGWCREGNAFQVRLWLDDTEHD-LNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-----------------NSTNMG   66 (448)
T ss_pred             hhhhhcCCeEEEEEEecCcccc-cccccccCcchhhhhhhcccHHHHHHHHhccccc-----------------ccccCC
Confidence            3345666655555545543332 3567788999999999999999999999999987                 788888


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           86 KESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        86 ~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      ..||||+|+.+|+.++++.|+++.+|++..+..|.| |||+||.-|...+.+-|+
T Consensus        67 ddtplhlaaahghrdivqkll~~kadvnavnehgnt-plhyacfwgydqiaedli  120 (448)
T KOG0195|consen   67 DDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNT-PLHYACFWGYDQIAEDLI  120 (448)
T ss_pred             CCcchhhhhhcccHHHHHHHHHHhcccchhhccCCC-chhhhhhhcHHHHHHHHH
Confidence            899999999999999999999999999999999999 999999999988877653

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.80  E-value=5.7e-19  Score=131.48  Aligned_cols=125  Identities=15%  Similarity=0.084  Sum_probs=104.9

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      .||||.|+..|+.++++.|++.+.++  +..|..|+||||+|+..|+.+++++|++.++.. +  ...+.++        
T Consensus       559 ~TpLh~Aa~~g~~~~v~~Ll~~gadi--n~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~-~--~~~~~~~L~~Aa~~g  633 (823)
T PLN03192        559 RTPLHIAASKGYEDCVLVLLKHACNV--HIRDANGNTALWNAISAKHHKIFRILYHFASIS-D--PHAAGDLLCTAAKRN  633 (823)
T ss_pred             CCHHHHHHHcChHHHHHHHHhcCCCC--CCcCCCCCCHHHHHHHhCCHHHHHHHHhcCccc-C--cccCchHHHHHHHhC
Confidence            47999999999999999999998877  678899999999999999999999998776542 1  1233344        


Q ss_pred             ---------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCC-CChHHHHHHHcCC
Q 038923           74 ---------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDG-LTTSLHVAASAGH  132 (140)
Q Consensus        74 ---------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~-~t~~l~~A~~~g~  132 (140)
                               ..+..++.+|..|+||||+|+..|+.+++++|++.|++++..+..| .+ |..++.....
T Consensus       634 ~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t-~~~l~~~~~~  701 (823)
T PLN03192        634 DLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFS-PTELRELLQK  701 (823)
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCC-HHHHHHHHHH
Confidence                     3445568899999999999999999999999999999999999888 77 9888765443

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.80  E-value=6.2e-19  Score=130.29  Aligned_cols=133  Identities=20%  Similarity=0.130  Sum_probs=106.7

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHH-HHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC-------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILH-LASRYEHEELALEILKLCPEMLAAPNDKFETP-------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~-~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~-------   73 (140)
                      +.+++.|++.|+.+.++.+++..+....+..|..|.|||| .|+..++.++++.|++.+.     .+..|.||       
T Consensus        18 ~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A~~~   92 (743)
T TIGR00870        18 EKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAISLE   92 (743)
T ss_pred             HHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHHHhc
Confidence            3578999999999999999988433333667889999999 8888999999999999886     45667777       


Q ss_pred             --------------Cch-----hhhh----ccccCCCcHHHHHHHcCCHHHHHHHHcCCCcccccc--------------
Q 038923           74 --------------TDS-----WVVH----MMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEM--------------  116 (140)
Q Consensus        74 --------------~~~-----~~~~----~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~--------------  116 (140)
                                    ...     ..++    .....|.||||+|+.+|+.++++.|++.|++++.++              
T Consensus        93 ~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~  172 (743)
T TIGR00870        93 YVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSF  172 (743)
T ss_pred             cHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcc
Confidence                          000     0011    112468999999999999999999999999998653              


Q ss_pred             CCCCChHHHHHHHcCCHHHHhhhC
Q 038923          117 DDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       117 ~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      ..|++ |||.|+..|+.+++++|+
T Consensus       173 ~~g~t-pL~~Aa~~~~~~iv~lLl  195 (743)
T TIGR00870       173 YHGES-PLNAAACLGSPSIVALLS  195 (743)
T ss_pred             ccccc-HHHHHHHhCCHHHHHHHh
Confidence            24788 999999999999999875

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02795 ankyrin-like protein; Provisional

Probab=99.79  E-value=8e-19  Score=120.82  Aligned_cols=130  Identities=12%  Similarity=-0.077  Sum_probs=105.5

Q ss_pred             HHHHcCCHHHHHHHhhhchHHH----hhcCCCCCCcHHHHHHh--hCcHHHHHHHHhhCCcccCCCCCCCCCC-------
Q 038923            7 ETILKGDVPNFLNLVHEDEAII----KQTVPGSSNTILHLASR--YEHEELALEILKLCPEMLAAPNDKFETP-------   73 (140)
Q Consensus         7 ~a~~~g~~~~~~~ll~~~~~~~----~~~~~~~g~t~l~~A~~--~g~~~~~~~Ll~~~~~~~~~~~~~~~~~-------   73 (140)
                      .|+..+..|.++.|++++..+.    .-..+.+++|+||+++.  .|+.+++++|+++|+++ +..  ++.||       
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADI-n~~--~~~t~lh~A~~~  159 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVI-YKI--ECLNAYFRGICK  159 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCC-CCC--CCCCHHHHHHHc
Confidence            6888999999999999987752    00366779999999999  89999999999999995 443  33556       


Q ss_pred             ----------Cchh-hhhcc-----ccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHh
Q 038923           74 ----------TDSW-VVHMM-----NRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFA  137 (140)
Q Consensus        74 ----------~~~~-~~~~~-----~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~  137 (140)
                                ..+. ..+..     +..+.+++|.|+..++.+++++|+++|++++.++..|.| |||+|+..|+.++++
T Consensus       160 ~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~T-pLh~Aa~~g~~eiVe  238 (437)
T PHA02795        160 KESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRT-LLYRAIYAGYIDLVS  238 (437)
T ss_pred             CcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCC-HHHHHHHcCCHHHHH
Confidence                      1121 11111     234678999999999999999999999999999999999 999999999999999


Q ss_pred             hhC
Q 038923          138 NLV  140 (140)
Q Consensus       138 ~Ll  140 (140)
                      +|+
T Consensus       239 lLL  241 (437)
T PHA02795        239 WLL  241 (437)
T ss_pred             HHH
Confidence            885

>PHA02730 ankyrin-like protein; Provisional

Probab=99.79  E-value=7.3e-19  Score=126.19  Aligned_cols=121  Identities=12%  Similarity=0.055  Sum_probs=100.9

Q ss_pred             CHHHHHHHHcC---CHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhC--cHHHHHHHHhhCCcccCCCCCCCCCCCch
Q 038923            2 DERLFETILKG---DVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYE--HEELALEILKLCPEMLAAPNDKFETPTDS   76 (140)
Q Consensus         2 ~~~l~~a~~~g---~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g--~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~   76 (140)
                      .||||.|+..|   +.++++.|+++|+++  +..|..|+||||+|+..+  +.|++++|++.|++..             
T Consensus        42 ~TaLh~A~~~~~~~~~eivklLLs~GAdi--n~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~-------------  106 (672)
T PHA02730         42 NNALHCYVSNKCDTDIKIVRLLLSRGVER--LCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNAS-------------  106 (672)
T ss_pred             CcHHHHHHHcCCcCcHHHHHHHHhCCCCC--cccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCC-------------
Confidence            47999999997   499999999999888  678899999999999976  7999999999976420             


Q ss_pred             hhhhccccCCCcHHHHHHH--cCCHHHHHHHHc-CCCccccccC-----CCCChHHHHHHHcCCHHHHhhhC
Q 038923           77 WVVHMMNRNKESALYVAYE--RGRHDVVKQLLN-YPSVSLLEMD-----DGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        77 ~~~~~~~~~~~t~l~~A~~--~~~~~~~~~L~~-~~~~~~~~~~-----~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                        .+..+..+.+|++.++.  .++.+++++|+. .+++++....     .|.+ |+++|...++.|++++|+
T Consensus       107 --~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~-~~yl~~~~~~~eIvklLi  175 (672)
T PHA02730        107 --NELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLV-DIYVTTPNPRPEVLLWLL  175 (672)
T ss_pred             --cccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchh-hhhHhcCCCchHHHHHHH
Confidence              03456668899998887  889999999996 6678775532     5777 999999999999999985

>PHA02792 ankyrin-like protein; Provisional

Probab=99.77  E-value=4.9e-18  Score=121.00  Aligned_cols=106  Identities=10%  Similarity=0.113  Sum_probs=92.1

Q ss_pred             HHHHHHHcCCHHHHHHHhhhchHHHhhcCCCC--CCcHHHHHHhhCcH---HHHHHHHhhCCcccCCCCCCCCCCCchhh
Q 038923            4 RLFETILKGDVPNFLNLVHEDEAIIKQTVPGS--SNTILHLASRYEHE---ELALEILKLCPEMLAAPNDKFETPTDSWV   78 (140)
Q Consensus         4 ~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~--g~t~l~~A~~~g~~---~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~   78 (140)
                      .++.|+..|+.+.++.|++.|++.  +..+..  +.||||+|+..+..   +++++|+++|+++                
T Consensus       342 ~~~~Aa~~gn~eIVelLIs~GADI--N~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADI----------------  403 (631)
T PHA02792        342 KYFQKFDNRDPKVVEYILKNGNVV--VEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDI----------------  403 (631)
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCch--hhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCcc----------------
Confidence            578889999999999999999887  445544  46999987776654   4688889999886                


Q ss_pred             hhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHH
Q 038923           79 VHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAAS  129 (140)
Q Consensus        79 ~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~  129 (140)
                       +.++..|+||||+|+..++.+++++|++.|++++.++..|.| ||+.|+.
T Consensus       404 -N~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~T-pL~~A~~  452 (631)
T PHA02792        404 -NKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGST-CIGICVI  452 (631)
T ss_pred             -ccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCC-HHHHHHH
Confidence             788999999999999999999999999999999999999999 9999976

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.77  E-value=1e-18  Score=129.20  Aligned_cols=120  Identities=13%  Similarity=0.080  Sum_probs=98.9

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhc------------CCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCC
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQT------------VPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKF   70 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~------------~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~   70 (140)
                      ||||.|+..|+.++++.|++.++++....            ....|.||||+|+..|+.+++++|+++++++        
T Consensus       130 TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadi--------  201 (743)
T TIGR00870       130 TALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADI--------  201 (743)
T ss_pred             cHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcch--------
Confidence            79999999999999999999987762110            1135899999999999999999999999886        


Q ss_pred             CCCCchhhhhccccCCCcHHHHHHHcC---------CHHHHHHHHcCCCc---c----ccccCCCCChHHHHHHHcCCHH
Q 038923           71 ETPTDSWVVHMMNRNKESALYVAYERG---------RHDVVKQLLNYPSV---S----LLEMDDGLTTSLHVAASAGHLG  134 (140)
Q Consensus        71 ~~~~~~~~~~~~~~~~~t~l~~A~~~~---------~~~~~~~L~~~~~~---~----~~~~~~~~t~~l~~A~~~g~~~  134 (140)
                               +..|..|+||+|+|+..+         ...+.++++..++.   .    +..|..|.| |||.|+..|+.+
T Consensus       202 ---------n~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~T-PL~~A~~~g~~~  271 (743)
T TIGR00870       202 ---------LTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLT-PLKLAAKEGRIV  271 (743)
T ss_pred             ---------hhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCC-chhhhhhcCCcc
Confidence                     788999999999999986         23455666655443   3    567889999 999999999999


Q ss_pred             HHhhhC
Q 038923          135 TFANLV  140 (140)
Q Consensus       135 ~~~~Ll  140 (140)
                      ++++|+
T Consensus       272 l~~lLL  277 (743)
T TIGR00870       272 LFRLKL  277 (743)
T ss_pred             HHHHHH
Confidence            999874

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.77  E-value=6.5e-18  Score=108.15  Aligned_cols=118  Identities=23%  Similarity=0.219  Sum_probs=108.7

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCc-----HHHHHHHHhhCC--cccCCCCCCCCCCCc
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEH-----EELALEILKLCP--EMLAAPNDKFETPTD   75 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~-----~~~~~~Ll~~~~--~~~~~~~~~~~~~~~   75 (140)
                      ++++.++..++...++.++..+.++  +..+..|.||||+|+..++     .+++++|++.++  ...            
T Consensus        75 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~------------  140 (235)
T COG0666          75 LPLHSAASKGDDKIVKLLLASGADV--NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVN------------  140 (235)
T ss_pred             CHHHHHHHcCcHHHHHHHHHcCCCc--ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCc------------
Confidence            5789999999999999999998887  6788999999999999999     999999999999  332            


Q ss_pred             hhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923           76 SWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus        76 ~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                          +..+..|.||+|+|+..|+.++++.|+..|++++..+..|.| ++++|+..++.++++.+
T Consensus       141 ----~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t-~l~~a~~~~~~~~~~~l  199 (235)
T COG0666         141 ----NLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVT-ALDPAAKNGRIELVKLL  199 (235)
T ss_pred             ----cccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCc-chhhhcccchHHHHHHH
Confidence                566899999999999999999999999999999999999999 99999999999988776

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.76  E-value=2.6e-18  Score=104.78  Aligned_cols=92  Identities=20%  Similarity=0.121  Sum_probs=80.6

Q ss_pred             HHHHHHHHcCCHH---HHHHHhhhchHHHhhcCC-CCCCcHHHHHHhhCcHHHHHHHHhh-CCcccCCCCCCCCCCCchh
Q 038923            3 ERLFETILKGDVP---NFLNLVHEDEAIIKQTVP-GSSNTILHLASRYEHEELALEILKL-CPEMLAAPNDKFETPTDSW   77 (140)
Q Consensus         3 ~~l~~a~~~g~~~---~~~~ll~~~~~~~~~~~~-~~g~t~l~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~~~~~~~~~   77 (140)
                      |+||.|+..|..+   .++.|++.+.+.  +..+ ..|.||||+|+..|+.+++++|++. +.++               
T Consensus        57 t~Lh~a~~~~~~~~~e~v~~Ll~~gadi--n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~---------------  119 (154)
T PHA02736         57 QCVHIVSNPDKADPQEKLKLLMEWGADI--NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNM---------------  119 (154)
T ss_pred             EEEEeecccCchhHHHHHHHHHHcCCCc--cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC---------------
Confidence            6899999999874   578899988776  5565 5899999999999999999999984 7765               


Q ss_pred             hhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccc
Q 038923           78 VVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSL  113 (140)
Q Consensus        78 ~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~  113 (140)
                        +..+..|.||||+|+..|+.+++++|++.|++.+
T Consensus       120 --n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        120 --EILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             --ccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence              6788999999999999999999999999998764

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.76  E-value=9.9e-19  Score=124.28  Aligned_cols=133  Identities=21%  Similarity=0.127  Sum_probs=111.2

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC---------
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP---------   73 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~---------   73 (140)
                      .|||+|++.|+.+.++.++.+....  +..+..|.||||.|++.||.+++.+|++++++ +...+.++.++         
T Consensus        84 ~plhlaaw~g~~e~vkmll~q~d~~--na~~~e~~tplhlaaqhgh~dvv~~Ll~~~ad-p~i~nns~~t~ldlA~qfgr  160 (854)
T KOG0507|consen   84 LPLHLAAWNGNLEIVKMLLLQTDIL--NAVNIENETPLHLAAQHGHLEVVFYLLKKNAD-PFIRNNSKETVLDLASRFGR  160 (854)
T ss_pred             ceEEehhhcCcchHHHHHHhcccCC--CcccccCcCccchhhhhcchHHHHHHHhcCCC-ccccCcccccHHHHHHHhhh
Confidence            4799999999999999999987333  67888999999999999999999999999998 67777778777         


Q ss_pred             ----------------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHh
Q 038923           74 ----------------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFA  137 (140)
Q Consensus        74 ----------------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~  137 (140)
                                      ........++..+.+|+|+|+.+|+.++++.|+..|.+++... ...| +||.|+..|..++|+
T Consensus       161 ~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t-~~gt-alheaalcgk~evvr  238 (854)
T KOG0507|consen  161 AEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTT-EDGT-ALHEAALCGKAEVVR  238 (854)
T ss_pred             hHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCccccc-ccch-hhhhHhhcCcchhhh
Confidence                            0000022344567789999999999999999999999988877 5667 999999999999998


Q ss_pred             hhC
Q 038923          138 NLV  140 (140)
Q Consensus       138 ~Ll  140 (140)
                      .|+
T Consensus       239 ~ll  241 (854)
T KOG0507|consen  239 FLL  241 (854)
T ss_pred             HHH
Confidence            874

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.75  E-value=1.4e-17  Score=110.49  Aligned_cols=93  Identities=19%  Similarity=0.208  Sum_probs=79.8

Q ss_pred             hcCCCCCCc-HHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhcc----ccCCCcHHHHHHHcCCHHHHHH
Q 038923           30 QTVPGSSNT-ILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMM----NRNKESALYVAYERGRHDVVKQ  104 (140)
Q Consensus        30 ~~~~~~g~t-~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~t~l~~A~~~~~~~~~~~  104 (140)
                      ...|..|+| +||.|+.+|+.+++++|++.|+++                 +.+    +..|.||||+|+..|+.+++++
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi-----------------N~~~~~sd~~g~TpLh~Aa~~~~~eivkl   88 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADP-----------------EAPFPLSENSKTNPLIYAIDCDNDDAAKL   88 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc-----------------cccCcccCCCCCCHHHHHHHcCCHHHHHH
Confidence            456666665 466677779999999999999985                 443    4689999999999999999999


Q ss_pred             HHcCCCcccccc-CCCCChHHHHHHHcCCHHHHhhhC
Q 038923          105 LLNYPSVSLLEM-DDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       105 L~~~~~~~~~~~-~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      |+++|++++.++ ..|.| |||.|+..|+.+++++|+
T Consensus        89 LL~~GADVN~~~~~~g~T-pLh~Aa~~~~~eivklLL  124 (300)
T PHA02884         89 LIRYGADVNRYAEEAKIT-PLYISVLHGCLKCLEILL  124 (300)
T ss_pred             HHHcCCCcCcccCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence            999999999864 47899 999999999999999884

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.75  E-value=3.2e-17  Score=105.71  Aligned_cols=118  Identities=24%  Similarity=0.209  Sum_probs=107.0

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhcc
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMM   82 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (140)
                      .+|..++-.|+.+....|++...+.  +..|.+|.++|..|+..|+.++++.|++.|+++.                ..+
T Consensus        14 ~~Lle~i~Kndt~~a~~LLs~vr~v--n~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN----------------~~q   75 (396)
T KOG1710|consen   14 SPLLEAIDKNDTEAALALLSTVRQV--NQRDPSGMSVLAHAAYKGNLTLVELLLELGADVN----------------DKQ   75 (396)
T ss_pred             hHHHHHHccCcHHHHHHHHHHhhhh--hccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcC----------------ccc
Confidence            5799999999999999999985555  6789999999999999999999999999999874                345


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923           83 NRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus        83 ~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                      ...+.|||++|+.+|+.++.+.|++.|+.+...+.-|+| +-..|+..|+-++|..+
T Consensus        76 hg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrT-AaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   76 HGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRT-AAQMAAFVGHHECVAII  131 (396)
T ss_pred             ccccccHHHHHHHcCCchHHHHHHhccCccccccchhhh-HHHHHHHhcchHHHHHH
Confidence            567899999999999999999999999999999999999 99999999999988754

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.73  E-value=3.3e-17  Score=119.49  Aligned_cols=104  Identities=17%  Similarity=0.162  Sum_probs=92.4

Q ss_pred             HHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccc
Q 038923            4 RLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMN   83 (140)
Q Consensus         4 ~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (140)
                      .|+.|+..|+.+.++.|++.+.++  +..|..|.||||+|+..|+.+++++|++.|+++                 +.++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadi--n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-----------------n~~d  145 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADP--NCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-----------------TLLD  145 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC--CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-----------------CCCC
Confidence            588999999999999999998776  667889999999999999999999999999986                 6788


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHcC-------CCccccccCCCCChHHHHH
Q 038923           84 RNKESALYVAYERGRHDVVKQLLNY-------PSVSLLEMDDGLTTSLHVA  127 (140)
Q Consensus        84 ~~~~t~l~~A~~~~~~~~~~~L~~~-------~~~~~~~~~~~~t~~l~~A  127 (140)
                      ..|.||||+|+..|+.+++++|+++       |++.+..+..|.+ |+..+
T Consensus       146 ~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~-~~~~~  195 (664)
T PTZ00322        146 KDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKP-PSLED  195 (664)
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCC-ccchh
Confidence            9999999999999999999999988       7887777777776 65443

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.73  E-value=1.2e-17  Score=84.34  Aligned_cols=54  Identities=30%  Similarity=0.330  Sum_probs=46.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           86 KESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        86 ~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      |.||+|+|+..|+.+++++|++.|.+++.+|.+|.| |||.|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t-~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRT-PLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS---HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCC-HHHHHHHccCHHHHHHHC
Confidence            679999999999999999999999999999999999 999999999999999985

...

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.71  E-value=1.8e-16  Score=92.73  Aligned_cols=91  Identities=27%  Similarity=0.325  Sum_probs=83.3

Q ss_pred             CCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCc
Q 038923           32 VPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSV  111 (140)
Q Consensus        32 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~  111 (140)
                      .+..|.||||+|+..++.+++++|++.+...                 +..+..|.+|+|.|+..++.+++++|++.+..
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-----------------~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~   65 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADV-----------------NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD   65 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-----------------CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            4567999999999999999999999999874                 46778899999999999999999999999988


Q ss_pred             cccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923          112 SLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       112 ~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      ++..+..+.| |+|+|+..++.+++++|+
T Consensus        66 ~~~~~~~~~~-~l~~a~~~~~~~~~~~L~   93 (126)
T cd00204          66 VNARDKDGNT-PLHLAARNGNLDVVKLLL   93 (126)
T ss_pred             ccccCCCCCC-HHHHHHHcCcHHHHHHHH
Confidence            8888888999 999999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.71  E-value=6.4e-17  Score=81.64  Aligned_cols=54  Identities=28%  Similarity=0.355  Sum_probs=45.3

Q ss_pred             CCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHH
Q 038923           36 SNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLL  106 (140)
Q Consensus        36 g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~  106 (140)
                      |.||||+|+..|+.+++++|++.+.++                 +.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-----------------n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-----------------NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-----------------T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-----------------CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            689999999999999999999999886                 678999999999999999999999986

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=7.6e-17  Score=111.21  Aligned_cols=115  Identities=17%  Similarity=0.127  Sum_probs=96.6

Q ss_pred             HHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhcccc
Q 038923            5 LFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNR   84 (140)
Q Consensus         5 l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (140)
                      |..|+.-|.++.|+..+..-.++  ...+..|-|+||-|+-.||.+||+||++.|+++                 |..|.
T Consensus       554 LLDaaLeGEldlVq~~i~ev~Dp--SqpNdEGITaLHNAiCaghyeIVkFLi~~ganV-----------------Na~DS  614 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDP--SQPNDEGITALHNAICAGHYEIVKFLIEFGANV-----------------NAADS  614 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCC--CCCCccchhHHhhhhhcchhHHHHHHHhcCCcc-----------------cCccC
Confidence            56889999999999998876555  557788999999999999999999999999997                 88999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHcCCCcccccc-CCCCChHHHHHH--HcCCHHHHhhh
Q 038923           85 NKESALYVAYERGRHDVVKQLLNYPSVSLLEM-DDGLTTSLHVAA--SAGHLGTFANL  139 (140)
Q Consensus        85 ~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~-~~~~t~~l~~A~--~~g~~~~~~~L  139 (140)
                      +||||||+|+..++..+++.|++.|+.+.... .++.| +....-  .-|...|.++|
T Consensus       615 dGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeT-a~eKCee~eeGY~~CsqyL  671 (752)
T KOG0515|consen  615 DGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMET-AAEKCEEMEEGYDQCSQYL  671 (752)
T ss_pred             CCCchhhhhhhcCchHHHHHHHhccceEEeeecccccc-hhhhcchhhhhHHHHHHHH
Confidence            99999999999999999999999987765444 46777 776653  35666677765

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.69  E-value=1e-16  Score=110.33  Aligned_cols=91  Identities=16%  Similarity=0.165  Sum_probs=83.7

Q ss_pred             HHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccc
Q 038923            4 RLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMN   83 (140)
Q Consensus         4 ~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (140)
                      .+..|++.|+.+.+..|+..+..+  +..+.+|.|+||.||.-.+.+||++|++.++++                 +..+
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~--~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V-----------------n~~d  103 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASP--NLCNVDGLTALHQACIDDNLEMVKFLVENGANV-----------------NAQD  103 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCc--cccCCccchhHHHHHhcccHHHHHHHHHhcCCc-----------------cccc
Confidence            467899999999999999998777  678899999999999999999999999999997                 7889


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHcCCCccc
Q 038923           84 RNKESALYVAYERGRHDVVKQLLNYPSVSL  113 (140)
Q Consensus        84 ~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~  113 (140)
                      ..+|||+|.|+..|+..++++|+..|+++-
T Consensus       104 ~e~wtPlhaaascg~~~i~~~li~~gA~~~  133 (527)
T KOG0505|consen  104 NEGWTPLHAAASCGYLNIVEYLIQHGANLL  133 (527)
T ss_pred             cccCCcchhhcccccHHHHHHHHHhhhhhh
Confidence            999999999999999999999999887754

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.66  E-value=5.2e-16  Score=113.31  Aligned_cols=84  Identities=21%  Similarity=0.175  Sum_probs=79.7

Q ss_pred             HHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCC
Q 038923           39 ILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDD  118 (140)
Q Consensus        39 ~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~  118 (140)
                      .|+.|+..|+.+++++|++.|+++                 +..+..|.||||+|+..|+.+++++|++.|++++.++..
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadi-----------------n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~  147 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADP-----------------NCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKD  147 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-----------------CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
Confidence            488999999999999999999986                 678899999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHcCCHHHHhhhC
Q 038923          119 GLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       119 ~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      |.| |||+|+..|+.+++++|+
T Consensus       148 G~T-pLh~A~~~g~~~iv~~Ll  168 (664)
T PTZ00322        148 GKT-PLELAEENGFREVVQLLS  168 (664)
T ss_pred             CCC-HHHHHHHCCcHHHHHHHH
Confidence            999 999999999999999885

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.65  E-value=1.7e-16  Score=80.54  Aligned_cols=47  Identities=28%  Similarity=0.306  Sum_probs=32.3

Q ss_pred             hccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHH
Q 038923           80 HMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVA  127 (140)
Q Consensus        80 ~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A  127 (140)
                      +.+|..|.||||+|+.+|+.+++++|+..|++++.++..|+| |+|+|
T Consensus        10 n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~T-pl~~A   56 (56)
T PF13857_consen   10 NAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQT-PLHYA   56 (56)
T ss_dssp             T---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS---HHHH-
T ss_pred             cCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCC-HHHhC
Confidence            788999999999999999999999999999999999999999 99987

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.65  E-value=1.1e-15  Score=109.68  Aligned_cols=120  Identities=16%  Similarity=0.140  Sum_probs=107.2

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhh-------cCC--------------CCCCcHHHHHHhhCcHHHHHHHHhhCCc
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQ-------TVP--------------GSSNTILHLASRYEHEELALEILKLCPE   61 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~-------~~~--------------~~g~t~l~~A~~~g~~~~~~~Ll~~~~~   61 (140)
                      |+||.|+.+.+.+.|+.|++.++++...       ..|              ..|..||.+||-.++.|++++|++++++
T Consensus       186 SaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd  265 (782)
T KOG3676|consen  186 SALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGAD  265 (782)
T ss_pred             chHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCC
Confidence            6999999999999999999999887222       111              1378899999999999999999999999


Q ss_pred             ccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCc--cccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923           62 MLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSV--SLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~--~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                      +                 +.+|..|+|.||..+.+-..++...+++.|++  ....+..|-| ||-+|+.-|..++.+.+
T Consensus       266 ~-----------------~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLT-PLtLAaklGk~emf~~i  327 (782)
T KOG3676|consen  266 P-----------------NAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLT-PLTLAAKLGKKEMFQHI  327 (782)
T ss_pred             C-----------------CccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCC-hHHHHHHhhhHHHHHHH
Confidence            7                 78999999999999999899999999999999  8889999999 99999999999998876


Q ss_pred             C
Q 038923          140 V  140 (140)
Q Consensus       140 l  140 (140)
                      +
T Consensus       328 l  328 (782)
T KOG3676|consen  328 L  328 (782)
T ss_pred             H
Confidence            4

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.65  E-value=1.1e-15  Score=109.73  Aligned_cols=137  Identities=18%  Similarity=0.110  Sum_probs=109.1

Q ss_pred             CHHHHHHHH---cCCHHHHHHHhhhchHHHhhcCC---CCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCc
Q 038923            2 DERLFETIL---KGDVPNFLNLVHEDEAIIKQTVP---GSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTD   75 (140)
Q Consensus         2 ~~~l~~a~~---~g~~~~~~~ll~~~~~~~~~~~~---~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~   75 (140)
                      +|.||.|..   .+..+.++.|++-.|..++....   ..|.||||+|+.+.+.++|++|++.|+++..+.....+.|.+
T Consensus       144 ET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~d  223 (782)
T KOG3676|consen  144 ETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDD  223 (782)
T ss_pred             hhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCccc
Confidence            467888876   45668899999988887665432   459999999999999999999999999976665566666632


Q ss_pred             hhhh-hcc-----ccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923           76 SWVV-HMM-----NRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus        76 ~~~~-~~~-----~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                      .-.. ...     -..|..||.+|+.-++.+++++|+.+|+|++.+|+.|.| .||.-+.+-..+|-.++
T Consensus       224 qk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNT-VLH~lVi~~~~~My~~~  292 (782)
T KOG3676|consen  224 QKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNT-VLHMLVIHFVTEMYDLA  292 (782)
T ss_pred             ccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCCh-HHHHHHHHHHHHHHHHH
Confidence            2110 111     246789999999999999999999999999999999999 99999888666666554

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.64  E-value=8.7e-16  Score=83.31  Aligned_cols=83  Identities=13%  Similarity=0.071  Sum_probs=74.7

Q ss_pred             HHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCC
Q 038923           39 ILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDD  118 (140)
Q Consensus        39 ~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~  118 (140)
                      -+.|++.+|.++-|+..+..|-++                 +. ...|++|||+|+..|+.+++++|++.|++++.+|.+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nV-----------------n~-~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKy   66 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNV-----------------NE-IYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKY   66 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccH-----------------HH-HhCCcccchHhhhcchHHHHHHHHHhccccCCcccc
Confidence            467889999999999999888664                 32 337899999999999999999999999999999999


Q ss_pred             CCChHHHHHHHcCCHHHHhhhC
Q 038923          119 GLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       119 ~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      |-| ||.-|++.||..+|++|+
T Consensus        67 gIT-PLLsAvwEGH~~cVklLL   87 (117)
T KOG4214|consen   67 GIT-PLLSAVWEGHRDCVKLLL   87 (117)
T ss_pred             CCc-HHHHHHHHhhHHHHHHHH
Confidence            999 999999999999999985

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.62  E-value=7.2e-16  Score=78.21  Aligned_cols=56  Identities=23%  Similarity=0.286  Sum_probs=31.9

Q ss_pred             HhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHH
Q 038923           20 LVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVA   93 (140)
Q Consensus        20 ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A   93 (140)
                      |++.+ ....+..|..|.||||+||.+|+.+++++|++.+.++                 +.+|..|+||+|+|
T Consensus         1 LL~~~-~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~-----------------~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHG-PADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADP-----------------NAKDKDGQTPLHYA   56 (56)
T ss_dssp             ------T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--T-----------------T---TTS--HHHH-
T ss_pred             CCccC-cCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC-----------------CCCcCCCCCHHHhC
Confidence            45555 2233678899999999999999999999999988886                 78999999999987

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=2.8e-15  Score=103.67  Aligned_cols=83  Identities=27%  Similarity=0.228  Sum_probs=77.1

Q ss_pred             HHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCC
Q 038923           40 LHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDG  119 (140)
Q Consensus        40 l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~  119 (140)
                      |.-|+..|-+++|+.++..-.+.                 ...+..|.|+||.|+..||.+||++|+.+|++++..|.+|
T Consensus       554 LLDaaLeGEldlVq~~i~ev~Dp-----------------SqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdG  616 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDP-----------------SQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDG  616 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCC-----------------CCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCC
Confidence            34589999999999999998876                 5788899999999999999999999999999999999999


Q ss_pred             CChHHHHHHHcCCHHHHhhhC
Q 038923          120 LTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       120 ~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      || |||+|+..+++.+++.|+
T Consensus       617 WT-PLHCAASCNnv~~ckqLV  636 (752)
T KOG0515|consen  617 WT-PLHCAASCNNVPMCKQLV  636 (752)
T ss_pred             Cc-hhhhhhhcCchHHHHHHH
Confidence            99 999999999999998875

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.53  E-value=4e-15  Score=110.46  Aligned_cols=137  Identities=18%  Similarity=0.157  Sum_probs=103.6

Q ss_pred             CCHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC-------
Q 038923            1 MDERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP-------   73 (140)
Q Consensus         1 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~-------   73 (140)
                      ++++|-.||+.|+.|.++.|+.++..+  ...|+.|++||.+|+-.||..+|+.|++..+++-...|+.+.|+       
T Consensus       757 ~~t~LT~acaggh~e~vellv~rgani--ehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsg  834 (2131)
T KOG4369|consen  757 IKTNLTSACAGGHREEVELLVVRGANI--EHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSG  834 (2131)
T ss_pred             ccccccccccCccHHHHHHHHHhcccc--cccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCC
Confidence            367899999999999999999998888  66889999999999999999999999999998766666667766       


Q ss_pred             ----------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccC--CCCChHHHHHHHcCCHHHHhhhC
Q 038923           74 ----------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMD--DGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 ----------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~--~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                                ...+-...++....|||.+|...|..+++..|+..|..++.+..  .|-. ||+.|.++||.+..+.|+
T Consensus       835 gr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgis-PLmlatmngh~~at~~ll  912 (2131)
T KOG4369|consen  835 GRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGIS-PLMLATMNGHQAATLSLL  912 (2131)
T ss_pred             CcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcc-hhhhhhhccccHHHHHHh
Confidence                      11111123444556777777777777777777777766665543  3555 777777777777666553

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.49  E-value=6.2e-13  Score=85.03  Aligned_cols=91  Identities=24%  Similarity=0.253  Sum_probs=82.9

Q ss_pred             CCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCC-----HHHHHHHH
Q 038923           32 VPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGR-----HDVVKQLL  106 (140)
Q Consensus        32 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~-----~~~~~~L~  106 (140)
                      .+..+.++++.++..+..+++.+++..+.++                 +..+..|.||+|+|+..++     .++++.|+
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll  131 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLASGADV-----------------NAKDADGDTPLHLAALNGNPPEGNIEVAKLLL  131 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHcCCCc-----------------ccccCCCCcHHHHHHhcCCcccchHHHHHHHH
Confidence            4455889999999999999999999999986                 6889999999999999999     99999999


Q ss_pred             cCCC---ccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923          107 NYPS---VSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       107 ~~~~---~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      +.|+   ..+.++..|.| |||+|+..|+.++++.|+
T Consensus       132 ~~g~~~~~~~~~~~~g~t-pl~~A~~~~~~~~~~~ll  167 (235)
T COG0666         132 EAGADLDVNNLRDEDGNT-PLHWAALNGDADIVELLL  167 (235)
T ss_pred             HcCCCCCCccccCCCCCc-hhHHHHHcCchHHHHHHH
Confidence            9999   66676889999 999999999999998874

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.43  E-value=8.5e-14  Score=103.62  Aligned_cols=135  Identities=13%  Similarity=0.089  Sum_probs=102.0

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC---------
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP---------   73 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~---------   73 (140)
                      |+|-.|+..|.-+.+..||......  ..+-+.|.|||+-++..|.+++-++|+..|++....+-..-+-+         
T Consensus       928 Taltla~fqgr~evv~lLLa~~anv--ehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kG 1005 (2131)
T KOG4369|consen  928 TALTLALFQGRPEVVFLLLAAQANV--EHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKG 1005 (2131)
T ss_pred             cceeeccccCcchHHHHHHHHhhhh--hhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCC
Confidence            4555666666666666666665444  34556778888888888888888888888876433222221111         


Q ss_pred             ---------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           74 ---------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 ---------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                               ...+-+..++..|+|+|.+|+..|.+..++.|++.+++++..|....+ +++-|.+.||.+||++++
T Consensus      1006 h~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~qdnr~~S-~~maafRKgh~~iVk~mv 1080 (2131)
T KOG4369|consen 1006 HTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQQDNRTNS-RTMAAFRKGHFAIVKKMV 1080 (2131)
T ss_pred             chhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhhcccChhhhhccccc-ccHHHHHhchhheecccc
Confidence                     223346788899999999999999999999999999999999987888 999999999999999874

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=99.36  E-value=5.6e-12  Score=88.54  Aligned_cols=119  Identities=20%  Similarity=0.210  Sum_probs=104.4

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhcc
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMM   82 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (140)
                      ..|..|+..+++-.++.....+...  -..+.+..+.||+|+.-|+-++|+|++.+++.-               +++..
T Consensus       868 eeil~av~~~D~~klqE~h~~gg~l--l~~~~~~~sllh~a~~tg~~eivkyildh~p~e---------------lld~~  930 (1004)
T KOG0782|consen  868 EEILRAVLSSDLMKLQETHLNGGSL--LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSE---------------LLDMA  930 (1004)
T ss_pred             HHHHHHHHhccHHHHHHHHhcCCce--EeeCcchhhHHHHHHhcCChHHHHHHHhcCCHH---------------HHHHH
Confidence            4578899999998888887777766  356778899999999999999999999999842               22566


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923           83 NRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus        83 ~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                      +..|.|.||-|+..++..+.++|++.|+.....|..|.| |-..|-+.|..+.+.||
T Consensus       931 de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~t-p~eraqqa~d~dlaayl  986 (1004)
T KOG0782|consen  931 DETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKT-PQERAQQAGDPDLAAYL  986 (1004)
T ss_pred             hhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCC-hHHHHHhcCCchHHHHH
Confidence            789999999999999999999999999999999999999 99999999999988776

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.31  E-value=4.8e-12  Score=92.03  Aligned_cols=96  Identities=16%  Similarity=0.150  Sum_probs=84.8

Q ss_pred             HHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccc-cCCCcHHHHHH
Q 038923           16 NFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMN-RNKESALYVAY   94 (140)
Q Consensus        16 ~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~l~~A~   94 (140)
                      .++.++...++-..++.|..|.|+||+++..|..++++||+++|.++                 ..+| ..|+||||.|.
T Consensus        32 qlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv-----------------~vqD~ESG~taLHRai   94 (1267)
T KOG0783|consen   32 QLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV-----------------FVQDEESGYTALHRAI   94 (1267)
T ss_pred             HHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCcee-----------------eeccccccchHhhHhh
Confidence            46777776655556788999999999999999999999999999986                 4555 57899999999


Q ss_pred             HcCCHHHHHHHHcCCCccccccCCCCChHHHHHHH
Q 038923           95 ERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAAS  129 (140)
Q Consensus        95 ~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~  129 (140)
                      .+|+.+++-.|+++|.....+|..|.. ||..-++
T Consensus        95 yyG~idca~lLL~~g~SL~i~Dkegls-plq~~~r  128 (1267)
T KOG0783|consen   95 YYGNIDCASLLLSKGRSLRIKDKEGLS-PLQFLSR  128 (1267)
T ss_pred             hhchHHHHHHHHhcCCceEEecccCCC-HHHHHhh
Confidence            999999999999999999999999999 9988766

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.22  E-value=6.9e-11  Score=76.89  Aligned_cols=88  Identities=19%  Similarity=0.173  Sum_probs=78.7

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhcc
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMM   82 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (140)
                      ++|..|+..|+.+.++.|++.++++. ...+..+.||||+|+..|+.++++.|++.|+..                 ...
T Consensus        47 s~LahAaykGnl~~v~lll~~gaDvN-~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~-----------------~~v  108 (396)
T KOG1710|consen   47 SVLAHAAYKGNLTLVELLLELGADVN-DKQHGTLYTPLMFAALSGNQDVCRLLLDAGARM-----------------YLV  108 (396)
T ss_pred             cHHHHHHhcCcHHHHHHHHHhCCCcC-cccccccccHHHHHHHcCCchHHHHHHhccCcc-----------------ccc
Confidence            57889999999999999999998873 346688999999999999999999999999986                 678


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHcC
Q 038923           83 NRNKESALYVAYERGRHDVVKQLLNY  108 (140)
Q Consensus        83 ~~~~~t~l~~A~~~~~~~~~~~L~~~  108 (140)
                      |.-|+|+-..|+.-|+.++|..+-++
T Consensus       109 NsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen  109 NSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             cchhhhHHHHHHHhcchHHHHHHhcc
Confidence            88999999999999999998887544

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.21  E-value=1.3e-11  Score=84.75  Aligned_cols=88  Identities=20%  Similarity=0.186  Sum_probs=78.5

Q ss_pred             HHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccc
Q 038923            4 RLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMN   83 (140)
Q Consensus         4 ~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (140)
                      ++.+|++.|+++.++.+.-.+.+.  ...|.+..|+||+|+..|++++++||++.....+                +.+|
T Consensus       509 ~~~~aa~~GD~~alrRf~l~g~D~--~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~----------------~~kD  570 (622)
T KOG0506|consen  509 NVMYAAKNGDLSALRRFALQGMDL--ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDP----------------DPKD  570 (622)
T ss_pred             hhhhhhhcCCHHHHHHHHHhcccc--cccccccchhheeecccCceeHHHHHHHHHcCCC----------------Chhh
Confidence            578999999999999998888777  6788999999999999999999999999876433                5688


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHcCC
Q 038923           84 RNKESALYVAYERGRHDVVKQLLNYP  109 (140)
Q Consensus        84 ~~~~t~l~~A~~~~~~~~~~~L~~~~  109 (140)
                      +.|+|||.-|...+|.+++++|-+..
T Consensus       571 Rw~rtPlDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  571 RWGRTPLDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             ccCCCcchHhHhcCcHHHHHHHHHHh
Confidence            99999999999999999999998653

>PF13606 Ank_3: Ankyrin repeat

Probab=99.20  E-value=2.8e-11  Score=53.17  Aligned_cols=29  Identities=28%  Similarity=0.282  Sum_probs=27.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHcCCCccc
Q 038923           85 NKESALYVAYERGRHDVVKQLLNYPSVSL  113 (140)
Q Consensus        85 ~~~t~l~~A~~~~~~~~~~~L~~~~~~~~  113 (140)
                      +|+||||+||..|+.+++++|++.|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            48999999999999999999999999886

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.19  E-value=2.2e-11  Score=83.67  Aligned_cols=88  Identities=20%  Similarity=0.092  Sum_probs=80.8

Q ss_pred             CCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHc-CCCcc
Q 038923           34 GSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLN-YPSVS  112 (140)
Q Consensus        34 ~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~-~~~~~  112 (140)
                      .++...+.+|+..|.+..++.+.-.+.+.                 +.+|.+.+|.||.|+..|+.+++++|++ .+.++
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~-----------------~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~  566 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDL-----------------ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDP  566 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccc-----------------cccccccchhheeecccCceeHHHHHHHHHcCCC
Confidence            44567899999999999999998888886                 7889999999999999999999999995 57899


Q ss_pred             ccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923          113 LLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus       113 ~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                      +.+|.+|+| ||.-|...+|.+++++|
T Consensus       567 ~~kDRw~rt-PlDdA~~F~h~~v~k~L  592 (622)
T KOG0506|consen  567 DPKDRWGRT-PLDDAKHFKHKEVVKLL  592 (622)
T ss_pred             ChhhccCCC-cchHhHhcCcHHHHHHH
Confidence            999999999 99999999999999987

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.18  E-value=1.3e-10  Score=80.39  Aligned_cols=84  Identities=24%  Similarity=0.271  Sum_probs=76.1

Q ss_pred             HHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccc-cCCCcHHHHHHHcCCHHHHHHHHcCCCccccccC
Q 038923           39 ILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMN-RNKESALYVAYERGRHDVVKQLLNYPSVSLLEMD  117 (140)
Q Consensus        39 ~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~  117 (140)
                      -||-+++.|..+.+--|+..|++.                 |..+ ..|.||||.|++.|+..-++.|.-+|+|+...|.
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~-----------------N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~  198 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQA-----------------NFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDS  198 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHccccc-----------------CCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCC
Confidence            489999999999999999999986                 4444 5689999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHcCCHHHHhhhC
Q 038923          118 DGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       118 ~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      +|.| |+.+|-..||-++.+.|+
T Consensus       199 ~Gmt-P~~~AR~~gH~~laeRl~  220 (669)
T KOG0818|consen  199 SGMT-PVDYARQGGHHELAERLV  220 (669)
T ss_pred             CCCc-HHHHHHhcCchHHHHHHH
Confidence            9999 999999999999887663

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.15  E-value=2.3e-10  Score=80.47  Aligned_cols=93  Identities=20%  Similarity=0.274  Sum_probs=80.4

Q ss_pred             HHHHHHHcCCHHHHHHHhhhchHH--HhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhc
Q 038923            4 RLFETILKGDVPNFLNLVHEDEAI--IKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHM   81 (140)
Q Consensus         4 ~l~~a~~~g~~~~~~~ll~~~~~~--~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   81 (140)
                      .|..|....|+..+..|+.++...  .....+.+|.|+||+||+.|++.+.++|+.+|.++                 ..
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-----------------~~  689 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-----------------MA  689 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-----------------ee
Confidence            477888888999999999887543  33455677899999999999999999999999986                 67


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHcCCCccc
Q 038923           82 MNRNKESALYVAYERGRHDVVKQLLNYPSVSL  113 (140)
Q Consensus        82 ~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~  113 (140)
                      .|..|.|+|.||-+.|..+++..|+.+|+..+
T Consensus       690 rda~g~t~l~yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  690 RDAHGRTALFYARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             cccCCchhhhhHhhcccHHHHHHHHHcCCCcc
Confidence            89999999999999999999999999997644

>PF13606 Ank_3: Ankyrin repeat

Probab=99.13  E-value=1e-10  Score=51.33  Aligned_cols=28  Identities=29%  Similarity=0.347  Sum_probs=26.1

Q ss_pred             CCCcHHHHHHhhCcHHHHHHHHhhCCcc
Q 038923           35 SSNTILHLASRYEHEELALEILKLCPEM   62 (140)
Q Consensus        35 ~g~t~l~~A~~~g~~~~~~~Ll~~~~~~   62 (140)
                      .|+||||+||..|+.+++++|+++|+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            4899999999999999999999999874

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.12  E-value=1.3e-10  Score=52.38  Aligned_cols=32  Identities=28%  Similarity=0.258  Sum_probs=30.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHcCCCcccccc
Q 038923           85 NKESALYVAYERGRHDVVKQLLNYPSVSLLEM  116 (140)
Q Consensus        85 ~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~  116 (140)
                      +|.||||+|+.+|+.+++++|++.|++++.++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            48899999999999999999999999998876

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.12  E-value=2.7e-10  Score=78.87  Aligned_cols=86  Identities=17%  Similarity=0.229  Sum_probs=76.0

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhcc
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMM   82 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (140)
                      -.||..++.|+++..-.|+..|++. +-.....|.||||+|+..|+..=+++|+-.|+++                 +..
T Consensus       135 rQLhasvRt~nlet~LRll~lGA~~-N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~-----------------~a~  196 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGAQA-NFFHPEKGNTPLHVAAKAGQILQAELLAVYGADP-----------------GAQ  196 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHccccc-CCCCcccCCchhHHHHhccchhhhhHHhhccCCC-----------------CCC
Confidence            4699999999999999999999887 2234478999999999999999999999999997                 789


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHH
Q 038923           83 NRNKESALYVAYERGRHDVVKQLL  106 (140)
Q Consensus        83 ~~~~~t~l~~A~~~~~~~~~~~L~  106 (140)
                      |.+|.||+.+|-..||-++.+-|+
T Consensus       197 d~~GmtP~~~AR~~gH~~laeRl~  220 (669)
T KOG0818|consen  197 DSSGMTPVDYARQGGHHELAERLV  220 (669)
T ss_pred             CCCCCcHHHHHHhcCchHHHHHHH
Confidence            999999999999999988766554

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.07  E-value=3.5e-10  Score=50.89  Aligned_cols=28  Identities=29%  Similarity=0.415  Sum_probs=26.3

Q ss_pred             CCCcHHHHHHhhCcHHHHHHHHhhCCcc
Q 038923           35 SSNTILHLASRYEHEELALEILKLCPEM   62 (140)
Q Consensus        35 ~g~t~l~~A~~~g~~~~~~~Ll~~~~~~   62 (140)
                      +|.||||+|+.+|+.+++++|+++|+++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~   28 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADI   28 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCC
Confidence            4899999999999999999999999984

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=99.04  E-value=1e-09  Score=77.45  Aligned_cols=89  Identities=11%  Similarity=0.095  Sum_probs=81.9

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhcc
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMM   82 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (140)
                      +-||+|++.|+-++|+++++++|..+.+..++.|.|+||-|+-.++..++++|++.|+..                 ...
T Consensus       901 sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl-----------------~kt  963 (1004)
T KOG0782|consen  901 SLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASL-----------------RKT  963 (1004)
T ss_pred             hHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhh-----------------eec
Confidence            358999999999999999999998888888999999999999999999999999999986                 567


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHcC
Q 038923           83 NRNKESALYVAYERGRHDVVKQLLNY  108 (140)
Q Consensus        83 ~~~~~t~l~~A~~~~~~~~~~~L~~~  108 (140)
                      |..|.||-..|-+.|+.++..||-++
T Consensus       964 d~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  964 DSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             ccCCCChHHHHHhcCCchHHHHHhhh
Confidence            88999999999999999999999754

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.03  E-value=1.1e-09  Score=76.23  Aligned_cols=87  Identities=21%  Similarity=0.244  Sum_probs=73.4

Q ss_pred             HHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccc
Q 038923            4 RLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMN   83 (140)
Q Consensus         4 ~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (140)
                      ++|.+....+.+.+...+...........|..|.||||+|+.-||.+.++.|+..++++                 ..+|
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-----------------~~kN   85 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-----------------SIKN   85 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-----------------cccc
Confidence            58899999998888876554433333567788999999999999999999999999986                 6899


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHc
Q 038923           84 RNKESALYVAYERGRHDVVKQLLN  107 (140)
Q Consensus        84 ~~~~t~l~~A~~~~~~~~~~~L~~  107 (140)
                      +.||+|||-|+..|+.+++..++.
T Consensus        86 ~~gWs~L~EAv~~g~~q~i~~vlr  109 (560)
T KOG0522|consen   86 NEGWSPLHEAVSTGNEQIITEVLR  109 (560)
T ss_pred             cccccHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999988766664

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.94  E-value=2.9e-09  Score=74.29  Aligned_cols=85  Identities=18%  Similarity=0.176  Sum_probs=69.6

Q ss_pred             cHHHHHHhhCcHHHHHHHHhhCC-cccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCcccccc
Q 038923           38 TILHLASRYEHEELALEILKLCP-EMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEM  116 (140)
Q Consensus        38 t~l~~A~~~g~~~~~~~Ll~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~  116 (140)
                      .|+|+++.....+-+...+.... ..+                +..|..|.||||+|+.-|+...++.|+..|+++..++
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~i----------------d~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN   85 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVI----------------DRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKN   85 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhcee----------------ccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccc
Confidence            56999998887655544333322 222                5678889999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHcCCHHHHhhh
Q 038923          117 DDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus       117 ~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                      ..|++ |||-|+..|+.+++..+
T Consensus        86 ~~gWs-~L~EAv~~g~~q~i~~v  107 (560)
T KOG0522|consen   86 NEGWS-PLHEAVSTGNEQIITEV  107 (560)
T ss_pred             ccccc-HHHHHHHcCCHHHHHHH
Confidence            99999 99999999998776554

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.86  E-value=9.3e-09  Score=72.63  Aligned_cols=87  Identities=21%  Similarity=0.136  Sum_probs=72.7

Q ss_pred             HHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCC
Q 038923           40 LHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDG  119 (140)
Q Consensus        40 l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~  119 (140)
                      |.-|+...++..+-+|+.+|.....             .-...+.+|+|+||+||..|++.+.+.|+.+|.|+...|.+|
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~-------------~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g  694 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEV-------------NETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHG  694 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhh-------------hccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCC
Confidence            4456777778888899999885210             002345677999999999999999999999999999999999


Q ss_pred             CChHHHHHHHcCCHHHHhhhC
Q 038923          120 LTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       120 ~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      .| +|.+|-+.|.-|++.+|+
T Consensus       695 ~t-~l~yar~a~sqec~d~ll  714 (749)
T KOG0705|consen  695 RT-ALFYARQAGSQECIDVLL  714 (749)
T ss_pred             ch-hhhhHhhcccHHHHHHHH
Confidence            99 999999999999999875

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.78  E-value=2.6e-09  Score=78.30  Aligned_cols=60  Identities=22%  Similarity=0.318  Sum_probs=56.3

Q ss_pred             hccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccC-CCCChHHHHHHHcCCHHHHhhhC
Q 038923           80 HMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMD-DGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        80 ~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~-~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      +.+|..|++++|.|+.-+..++++||+.+|.++..+|. .|+| |||.|+.+|+++++-.||
T Consensus        46 nikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~t-aLHRaiyyG~idca~lLL  106 (1267)
T KOG0783|consen   46 NIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYT-ALHRAIYYGNIDCASLLL  106 (1267)
T ss_pred             hHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccch-HhhHhhhhchHHHHHHHH
Confidence            68899999999999999999999999999999999997 5888 999999999999988774

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.72  E-value=3.5e-08  Score=66.75  Aligned_cols=67  Identities=22%  Similarity=0.151  Sum_probs=58.0

Q ss_pred             HHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC
Q 038923            4 RLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP   73 (140)
Q Consensus         4 ~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~   73 (140)
                      .|..||+.|+++.|++|++.+-.+  |..|+...+||.+|+..||..++++|+++|+. ..+..-+|...
T Consensus        39 elceacR~GD~d~v~~LVetgvnV--N~vD~fD~spL~lAsLcGHe~vvklLLenGAi-C~rdtf~G~RC  105 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNV--NAVDRFDSSPLYLASLCGHEDVVKLLLENGAI-CSRDTFDGDRC  105 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCc--chhhcccccHHHHHHHcCcHHHHHHHHHcCCc-ccccccCcchh
Confidence            588999999999999999986665  67889999999999999999999999999996 45555566665

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.70  E-value=7.3e-08  Score=70.79  Aligned_cols=112  Identities=21%  Similarity=0.180  Sum_probs=90.6

Q ss_pred             HHHHHHHcCCHHHHHHHhhhchH--HHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhc
Q 038923            4 RLFETILKGDVPNFLNLVHEDEA--IIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHM   81 (140)
Q Consensus         4 ~l~~a~~~g~~~~~~~ll~~~~~--~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   81 (140)
                      .+..|+..|+...|+..++....  ...+..|.-|.++|+.|..+.+.|+.++|++.....                   
T Consensus        28 ~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------------------   88 (822)
T KOG3609|consen   28 GFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------------------   88 (822)
T ss_pred             HHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------------------
Confidence            46789999999999999886544  444678888999999999999999999999876531                   


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHcCCCccc----------cccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           82 MNRNKESALYVAYERGRHDVVKQLLNYPSVSL----------LEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        82 ~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~----------~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                           ..+|..|+..|..++++.++.+.....          ..-..+-| |+.+||..++.||++.||
T Consensus        89 -----gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~dit-PliLAAh~NnyEil~~Ll  151 (822)
T KOG3609|consen   89 -----GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDIT-PLMLAAHLNNFEILQCLL  151 (822)
T ss_pred             -----chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCcc-HHHHHHHhcchHHHHHHH
Confidence                 238999999999999999996543321          22234556 999999999999999985

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.69  E-value=8.2e-08  Score=64.99  Aligned_cols=68  Identities=25%  Similarity=0.218  Sum_probs=59.6

Q ss_pred             CcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCcccccc
Q 038923           37 NTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEM  116 (140)
Q Consensus        37 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~  116 (140)
                      +--|-.||+.|.++.+++|++.|.++                 |..|+...+||.+|+.-||.+++++|+++|+..+.-.
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV-----------------N~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdt   99 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV-----------------NAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDT   99 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc-----------------chhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccc
Confidence            44678999999999999999999886                 8899999999999999999999999999998766555


Q ss_pred             CCCCC
Q 038923          117 DDGLT  121 (140)
Q Consensus       117 ~~~~t  121 (140)
                      -.|..
T Consensus       100 f~G~R  104 (516)
T KOG0511|consen  100 FDGDR  104 (516)
T ss_pred             cCcch
Confidence            45555

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.66  E-value=3.5e-08  Score=73.40  Aligned_cols=85  Identities=16%  Similarity=0.141  Sum_probs=77.6

Q ss_pred             CCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccc
Q 038923           34 GSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSL  113 (140)
Q Consensus        34 ~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~  113 (140)
                      ..|.|+||.|+..|...++++|++.|+++                 +..+..|.+|+|.+...|+...+..|+++|++.+
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~v-----------------n~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~  716 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADV-----------------NALDSKGRTPLHHATASGHTSIACLLLKRGADPN  716 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcc-----------------hhhhccCCCcchhhhhhcccchhhhhcccccccc
Confidence            45789999999999999999999999996                 7899999999999999999999999999999999


Q ss_pred             cccCCCCChHHHHHHHcCCHHHH
Q 038923          114 LEMDDGLTTSLHVAASAGHLGTF  136 (140)
Q Consensus       114 ~~~~~~~t~~l~~A~~~g~~~~~  136 (140)
                      ..+..|.+ |+++|....+.+++
T Consensus       717 a~~~~~~~-~l~~a~~~~~~d~~  738 (785)
T KOG0521|consen  717 AFDPDGKL-PLDIAMEAANADIV  738 (785)
T ss_pred             ccCccCcc-hhhHHhhhccccHH
Confidence            99999999 99999776555444

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.51  E-value=8e-08  Score=71.89  Aligned_cols=108  Identities=21%  Similarity=0.207  Sum_probs=74.3

Q ss_pred             cCCCCCCcHHHHHHhhCcHHHHHHHHhh-CC-cccCCCCCCCCCC---------------CchhhhhccccCCCcHHHHH
Q 038923           31 TVPGSSNTILHLASRYEHEELALEILKL-CP-EMLAAPNDKFETP---------------TDSWVVHMMNRNKESALYVA   93 (140)
Q Consensus        31 ~~~~~g~t~l~~A~~~g~~~~~~~Ll~~-~~-~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~t~l~~A   93 (140)
                      .....|++.+|+++..++.-.++.+++. +. ......+..|..+               .++.-++.+|..||||||+|
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchH
Confidence            3445567777777777776666666664 22 2223333344333               23344578999999999999


Q ss_pred             HHcCCHHHHHHHHcCCCccc------cccCCCCChHHHHHHHcCCHHHHhhh
Q 038923           94 YERGRHDVVKQLLNYPSVSL------LEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus        94 ~~~~~~~~~~~L~~~~~~~~------~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                      +.+|+..++..|+..|++..      .....|.| +-..|..+|+..+.-+|
T Consensus       649 a~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~t-a~~la~s~g~~gia~~l  699 (975)
T KOG0520|consen  649 AFRGREKLVASLIELGADPGAVTDPSPETPGGKT-AADLARANGHKGIAGYL  699 (975)
T ss_pred             hhcCHHHHHHHHHHhccccccccCCCCCCCCCCc-hhhhhhcccccchHHHH
Confidence            99999999999997776543      33445778 89999999988776554

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.41  E-value=7.1e-07  Score=55.17  Aligned_cols=60  Identities=18%  Similarity=0.186  Sum_probs=56.4

Q ss_pred             hhccccCCCcHHHHHHHcCCHHHHHHHHcCC-CccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923           79 VHMMNRNKESALYVAYERGRHDVVKQLLNYP-SVSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus        79 ~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~-~~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                      ++..|..|||+++.|+.-|..+.+.||+.+| +.+...+..+.+ ++.+|-+.|..+.++.|
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssld-aaqlaek~g~~~fvh~l   65 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLD-AAQLAEKGGAQAFVHSL   65 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccch-HHHHHHhcChHHHHHHH
Confidence            4788999999999999999999999999999 999999999999 99999999999998876

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.29  E-value=2.1e-06  Score=53.17  Aligned_cols=65  Identities=15%  Similarity=0.044  Sum_probs=57.3

Q ss_pred             hcCCCCCCcHHHHHHhhCcHHHHHHHHhhC-CcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcC
Q 038923           30 QTVPGSSNTILHLASRYEHEELALEILKLC-PEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNY  108 (140)
Q Consensus        30 ~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~  108 (140)
                      +..|..|||+++.|+..|..+.+.||+.+| +.+                 ...+.++.+...+|-..|..+++..|.+.
T Consensus         6 n~rD~fgWTalmcaa~eg~~eavsyllgrg~a~v-----------------gv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    6 NARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFV-----------------GVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             cchhhhcchHHHHHhhhcchhHHHHHhccCcccc-----------------cccccccchHHHHHHhcChHHHHHHHHHH
Confidence            567889999999999999999999999999 554                 67888999999999999999999999865


Q ss_pred             CCc
Q 038923          109 PSV  111 (140)
Q Consensus       109 ~~~  111 (140)
                      -.+
T Consensus        69 ~~e   71 (223)
T KOG2384|consen   69 DRE   71 (223)
T ss_pred             hcc
Confidence            443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.25  E-value=1.1e-06  Score=66.07  Aligned_cols=57  Identities=18%  Similarity=0.099  Sum_probs=40.3

Q ss_pred             ccccCCCcHHHHHHHcCCHHHHHHHH-cCCCccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923           81 MMNRNKESALYVAYERGRHDVVKQLL-NYPSVSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus        81 ~~~~~~~t~l~~A~~~~~~~~~~~L~-~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                      ..+..+...+|+ |..++.+..-+|+ -.|..++..|..|+| |||||+.+|+..++..|
T Consensus       603 eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~t-pL~wAa~~G~e~l~a~l  660 (975)
T KOG0520|consen  603 ELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWT-PLHWAAFRGREKLVASL  660 (975)
T ss_pred             hhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCc-ccchHhhcCHHHHHHHH
Confidence            344555566666 4444444443333 456778899999999 99999999999988765

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.13  E-value=2.7e-06  Score=63.71  Aligned_cols=84  Identities=21%  Similarity=0.253  Sum_probs=73.7

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhcc
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMM   82 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (140)
                      ++||.|+..|..-.++.|++.+.+.  +..+..|.+|+|.+...|+...+..+++++++.                 +..
T Consensus       658 s~lh~a~~~~~~~~~e~ll~~ga~v--n~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~-----------------~a~  718 (785)
T KOG0521|consen  658 SLLHVAVGTGDSGAVELLLQNGADV--NALDSKGRTPLHHATASGHTSIACLLLKRGADP-----------------NAF  718 (785)
T ss_pred             chhhhhhccchHHHHHHHHhcCCcc--hhhhccCCCcchhhhhhcccchhhhhccccccc-----------------ccc
Confidence            5799999999999999999999886  778999999999999999999999999999985                 678


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHH
Q 038923           83 NRNKESALYVAYERGRHDVVKQL  105 (140)
Q Consensus        83 ~~~~~t~l~~A~~~~~~~~~~~L  105 (140)
                      +..+.+|+.+|....+.+++-.+
T Consensus       719 ~~~~~~~l~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  719 DPDGKLPLDIAMEAANADIVLLL  741 (785)
T ss_pred             CccCcchhhHHhhhccccHHHHH
Confidence            88999999999766666554443

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.00  E-value=3.8e-05  Score=57.09  Aligned_cols=97  Identities=12%  Similarity=-0.018  Sum_probs=71.3

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhcc
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMM   82 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (140)
                      ++++.|+.+.+.+..+.|++..-..         ..+|.+|+..|.+++++.++.+..... .....+..+      ...
T Consensus        64 ~al~iai~nenle~~eLLl~~~~~~---------gdALL~aI~~~~v~~VE~ll~~~~~~~-~~~~~~d~~------~~~  127 (822)
T KOG3609|consen   64 LALHIAIDNENLELQELLLDTSSEE---------GDALLLAIAVGSVPLVELLLVHFVDAP-YLERSGDAN------SPH  127 (822)
T ss_pred             hceecccccccHHHHHHHhcCcccc---------chHHHHHHHHHHHHHHHHHHhcccccc-hhccccccC------ccc
Confidence            3678899999999999988873221         347889999999999999999877521 111111111      223


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHcCCCccccc
Q 038923           83 NRNKESALYVAYERGRHDVVKQLLNYPSVSLLE  115 (140)
Q Consensus        83 ~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~  115 (140)
                      ...+.||+.+||..++.+|++.|++.|+.+..-
T Consensus       128 ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen  128 FTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             CCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            456779999999999999999999999876533

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.86  E-value=2.5e-05  Score=54.94  Aligned_cols=45  Identities=20%  Similarity=0.139  Sum_probs=41.2

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHH
Q 038923           83 NRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAA  128 (140)
Q Consensus        83 ~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~  128 (140)
                      +....|+||+|+..|..+++.+|++.|+|+..+|..|.| |..++.
T Consensus       427 ~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grt-py~ls~  471 (591)
T KOG2505|consen  427 DYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRT-PYSLSA  471 (591)
T ss_pred             ccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCC-cccccc
Confidence            344679999999999999999999999999999999999 998876

>smart00248 ANK ankyrin repeats

Probab=97.77  E-value=6.2e-05  Score=31.48  Aligned_cols=27  Identities=33%  Similarity=0.345  Sum_probs=23.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHcCCCcc
Q 038923           86 KESALYVAYERGRHDVVKQLLNYPSVS  112 (140)
Q Consensus        86 ~~t~l~~A~~~~~~~~~~~L~~~~~~~  112 (140)
                      +.+|+|+|+..++.++++.|++.+.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            678999999999999999999887765

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=97.75  E-value=7e-05  Score=31.30  Aligned_cols=27  Identities=26%  Similarity=0.273  Sum_probs=24.0

Q ss_pred             CCCcHHHHHHhhCcHHHHHHHHhhCCc
Q 038923           35 SSNTILHLASRYEHEELALEILKLCPE   61 (140)
Q Consensus        35 ~g~t~l~~A~~~g~~~~~~~Ll~~~~~   61 (140)
                      .|.||+|+|+..++.++++.|++.+.+
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            378999999999999999999998775

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.94  E-value=0.00081  Score=47.72  Aligned_cols=43  Identities=12%  Similarity=0.049  Sum_probs=36.7

Q ss_pred             CCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHH
Q 038923           35 SSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAY   94 (140)
Q Consensus        35 ~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~   94 (140)
                      ...|+||+|+..|..+++.++|+.+.++                 ..+|..|.||..++.
T Consensus       429 ltsT~LH~aa~qg~~k~v~~~Leeg~Dp-----------------~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  429 LTSTFLHYAAAQGARKCVKYFLEEGCDP-----------------STKDGAGRTPYSLSA  471 (591)
T ss_pred             ccchHHHHHHhcchHHHHHHHHHhcCCc-----------------hhcccCCCCcccccc
Confidence            3579999999999999999999999885                 567777888877776

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.41  E-value=0.052  Score=35.22  Aligned_cols=112  Identities=15%  Similarity=0.108  Sum_probs=66.4

Q ss_pred             HHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhcccc
Q 038923            5 LFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNR   84 (140)
Q Consensus         5 l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (140)
                      |..|+..-+.+.+..++...         ..-.+++.++...+..+++.+|+.+...-  ++|.            ....
T Consensus       157 ledAV~AsN~~~i~~~VtdK---------kdA~~Am~~si~~~K~dva~~lls~f~ft--~~dv------------~~~~  213 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDK---------KDAHQAMWLSIGNAKEDVALYLLSKFNFT--KQDV------------ASME  213 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcch---------HHHHHHHHHHhcccHHHHHHHHHhhccee--cchh------------hhcC
Confidence            44555555555555444431         12346788888888899999999887631  1111            0111


Q ss_pred             CCCcHHHHHHH--cCCHHHHHHHHcCC-Cccccc---cCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           85 NKESALYVAYE--RGRHDVVKQLLNYP-SVSLLE---MDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        85 ~~~t~l~~A~~--~~~~~~~~~L~~~~-~~~~~~---~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      .+.--+.++..  .-...++++++++| .+++..   ..+|.| .|.-|..+++.|++..||
T Consensus       214 ~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdt-MLDNA~Ky~~~emi~~Ll  274 (284)
T PF06128_consen  214 KELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDT-MLDNAMKYKNSEMIAFLL  274 (284)
T ss_pred             cchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcch-HHHhHHhcCcHHHHHHHH
Confidence            11112333322  23566788888777 555433   336888 888888888888887764

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.35  E-value=0.026  Score=35.29  Aligned_cols=122  Identities=15%  Similarity=0.131  Sum_probs=77.1

Q ss_pred             HHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC-----------
Q 038923            5 LFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP-----------   73 (140)
Q Consensus         5 l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~-----------   73 (140)
                      +..|++.+-+++++..-+.-..   .  -...++.+-.||+..+.++|.|+-+.-.. .+ ...-...+           
T Consensus        50 l~HAVk~nmL~ILqkyke~L~~---~--~~~~q~LFElAC~~qkydiV~WI~qnL~i-~~-~~~iFdIA~~~kDlsLysl  122 (192)
T PF03158_consen   50 LYHAVKYNMLSILQKYKEDLEN---E--RYLNQELFELACEEQKYDIVKWIGQNLHI-YN-PEDIFDIAFAKKDLSLYSL  122 (192)
T ss_pred             HHHHHHcCcHHHHHHHHHHhhc---c--hhHHHHHHHHHHHHccccHHHHHhhccCC-CC-chhhhhhhhhccchhHHHH
Confidence            5678888888887776443111   1  12456778899999999999999554331 11 11111111           


Q ss_pred             CchhhhhccccC-C-------CcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           74 TDSWVVHMMNRN-K-------ESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 ~~~~~~~~~~~~-~-------~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      ......+..... +       ..-|..|+..|-...+-..+++|.+++.      + .|..|+.++|..++.+++
T Consensus       123 GY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~-vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  123 GYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------I-VLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------H-HHHHHHHhhHHHHHHHhh
Confidence            111111111111 1       1346789999999999888899887643      5 999999999999988764

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.11  E-value=0.067  Score=34.75  Aligned_cols=94  Identities=10%  Similarity=0.005  Sum_probs=63.7

Q ss_pred             HHHHHHHcCCHHHHHHHhhhchH---HHhhcCCCCCCcHHHHHHh--hCcHHHHHHHHhhCCcccCCCCCCCCCCCchhh
Q 038923            4 RLFETILKGDVPNFLNLVHEDEA---IIKQTVPGSSNTILHLASR--YEHEELALEILKLCPEMLAAPNDKFETPTDSWV   78 (140)
Q Consensus         4 ~l~~a~~~g~~~~~~~ll~~~~~---~~~~~~~~~g~t~l~~A~~--~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~   78 (140)
                      ++..++..+..+++-+|++.-.-   .....  ..+.--+-|+..  ..+..++++.+++|-..++.+            
T Consensus       182 Am~~si~~~K~dva~~lls~f~ft~~dv~~~--~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~------------  247 (284)
T PF06128_consen  182 AMWLSIGNAKEDVALYLLSKFNFTKQDVASM--EKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKK------------  247 (284)
T ss_pred             HHHHHhcccHHHHHHHHHhhcceecchhhhc--CcchhhHHHHHhhcCCcHHHHHHHHhccccccchh------------
Confidence            56777877888888888876321   11111  223334445433  345788999999886323222            


Q ss_pred             hhccccCCCcHHHHHHHcCCHHHHHHHHcCCCcc
Q 038923           79 VHMMNRNKESALYVAYERGRHDVVKQLLNYPSVS  112 (140)
Q Consensus        79 ~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~  112 (140)
                       -.+-++|.|-|.-|..+++.+++..|+++|+..
T Consensus       248 -F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  248 -FQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             -hhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence             234578999999999999999999999999853

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=95.72  E-value=0.038  Score=29.47  Aligned_cols=48  Identities=17%  Similarity=0.147  Sum_probs=39.3

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhC
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLC   59 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~   59 (140)
                      ..+..|+.+|+.|.++.+++.. .+     +   ...+..|+...+-++++||+++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~-----~---~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KP-----D---NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-cc-----H---HHHHHHHHHHhhHHHHHHHHHhc
Confidence            4688999999999999988653 22     1   34689999999999999999975

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=94.77  E-value=0.05  Score=29.00  Aligned_cols=45  Identities=16%  Similarity=0.105  Sum_probs=33.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           88 SALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        88 t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      ..+..|...|+.++++..++.+. +      ... ++..|+...+-+++++|+
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~-~------~~~-~l~~AI~~H~n~i~~~l~   52 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNK-P------DND-CLEYAIKSHNNEIADWLI   52 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhc-c------HHH-HHHHHHHHhhHHHHHHHH
Confidence            45778888899999888875442 1      133 788888888888888763

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=87.94  E-value=2.7  Score=26.63  Aligned_cols=73  Identities=14%  Similarity=0.077  Sum_probs=47.1

Q ss_pred             CcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCcccccc
Q 038923           37 NTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEM  116 (140)
Q Consensus        37 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~  116 (140)
                      +..+..|+.++...+++..-+.....                    -...++.+..||...+.++|+|.-..-...    
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~~--------------------~~~~q~LFElAC~~qkydiV~WI~qnL~i~----  102 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLENE--------------------RYLNQELFELACEEQKYDIVKWIGQNLHIY----  102 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhcc--------------------hhHHHHHHHHHHHHccccHHHHHhhccCCC----
Confidence            45567788988899888876654431                    123457788999999999999994322211    


Q ss_pred             CCCCChHHHHHHHcCCHHH
Q 038923          117 DDGLTTSLHVAASAGHLGT  135 (140)
Q Consensus       117 ~~~~t~~l~~A~~~g~~~~  135 (140)
                       +-.+ -+.+|....+.++
T Consensus       103 -~~~~-iFdIA~~~kDlsL  119 (192)
T PF03158_consen  103 -NPED-IFDIAFAKKDLSL  119 (192)
T ss_pred             -Cchh-hhhhhhhccchhH
Confidence             2222 5566666655544

These proteins may be involved in promoting survival of infected macrophages [].

>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins

Probab=80.12  E-value=3.6  Score=20.25  Aligned_cols=24  Identities=21%  Similarity=0.339  Sum_probs=20.9

Q ss_pred             HHHHHHHcCCHHHHHHHhhhchHH
Q 038923            4 RLFETILKGDVPNFLNLVHEDEAI   27 (140)
Q Consensus         4 ~l~~a~~~g~~~~~~~ll~~~~~~   27 (140)
                      +++.|+..||+..++.|.......
T Consensus         6 aiq~AiasGDLa~MK~l~~~aeq~   29 (53)
T PF08898_consen    6 AIQQAIASGDLAQMKALAAQAEQQ   29 (53)
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHH
Confidence            689999999999999998876554

It can be found independently or at the C terminus of the protein.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	140
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-04
2etb_A	256	Transient receptor potential cation channel subfam	3e-07
2etb_A	256	Transient receptor potential cation channel subfam	1e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-04
2pnn_A	273	Transient receptor potential cation channel subfa	2e-04
2pnn_A	273	Transient receptor potential cation channel subfa	5e-04
2pnn_A	273	Transient receptor potential cation channel subfa	6e-04
2pnn_A	273	Transient receptor potential cation channel subfa	9e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-04
2rfa_A	232	Transient receptor potential cation channel subfa	4e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-04

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 51.4 bits (124), Expect = 6e-09
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 14/104 (13%)

Query: 37  NTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYER 96
           ++ LHLA  +E + L +E+++     LA  N +             N  +++ L++A   
Sbjct: 9   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-------------NNLQQTPLHLAVIT 55

Query: 97  GRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV 140
            + ++ + LL          D    T LH+A   G L +   L 
Sbjct: 56  NQPEIAEALLGA-GCDPELRDFRGNTPLHLACEQGCLASVGVLT 98

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 13/100 (13%)

Query: 37  NTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYER 96
           NT LHLA           + + C                   +   N N  + L++A   
Sbjct: 79  NTPLHLACEQGCLASVGVLTQSCTTPHLHSI-----------LKATNYNGHTCLHLASIH 127

Query: 97  GRHDVVKQLLNY-PSVSLLEMDDGLTTSLHVAASAGHLGT 135
           G   +V+ L++    V+  E  +G  T+LH+A    +   
Sbjct: 128 GYLGIVELLVSLGADVNAQEPCNGR-TALHLAVDLQNPDL 166

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 47.1 bits (112), Expect = 3e-07
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 5/106 (4%)

Query: 38  TILHLASRYEHEELALEILKLCPEMLAAPN--DKF-ETPTDSWVVHMMNRNKESALYVAY 94
             L LA+  +  ++    L   P   A+    D    T   + V+   N  + SAL +  
Sbjct: 138 LPLSLAACTKQWDVV-TYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHM 196

Query: 95  ERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV 140
             G   +  +L     +  +    GLT  L +AA  G +  F +++
Sbjct: 197 YDGLLQMGARLCPTVQLEEISNHQGLT-PLKLAAKEGKIEIFRHIL 241

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 25/153 (16%), Positives = 42/153 (27%), Gaps = 29/153 (18%)

Query: 3   ERLFETILKGDVPNFLNLV-----HEDEAIIKQTVPGSS-NTILHLA---SRYEHEELAL 53
           +RLF  + +G       L+     +           GS+  T L  A    +       +
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 54  EILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNY----- 108
            +L++  +            TD            SAL++A E+     VK L+       
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDE------FYQGHSALHIAIEKRSLQCVKLLVENGADVH 117

Query: 109 --------PSVSLLEMDDGLTTSLHVAASAGHL 133
                             G    L +AA     
Sbjct: 118 LRACGRFFQKHQGTCFYFGE-LPLSLAACTKQW 149

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 17/97 (17%)

Query: 37  NTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYER 96
           +  LH A++  +    L  L+ C +     N               ++   +ALY A   
Sbjct: 74  DNPLHEAAKRGN----LSWLRECLDNRVGVNGL-------------DKAGSTALYWACHG 116

Query: 97  GRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
           G  D+V+ L   P++ L + +    T+LH AA  G+ 
Sbjct: 117 GHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYA 153

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 16/109 (14%), Positives = 33/109 (30%), Gaps = 14/109 (12%)

Query: 37  NTILHLASRYEHEELALEILK------------LCPEMLAAPNDKFETPTDSWVVHMMNR 84
              +  A          E+                         +      S  V     
Sbjct: 13  QVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGL-IPSNYVAEQAE 71

Query: 85  NKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
           + ++ L+ A +RG    +++ L+   V +  +D   +T+L+ A   GH 
Sbjct: 72  SIDNPLHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHGGHK 119

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 26/101 (25%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYV 92
           +T LH A+   + ++         ++L    A  + +             N  K+ A  +
Sbjct: 141 DTALHAAAWKGYADIV--------QLLLAKGARTDLR-------------NIEKKLAFDM 179

Query: 93  AYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
           A       ++K+     +V  L   +        +    H 
Sbjct: 180 ATNAACASLLKKKQGTDAVRTLSNAEDY-LDDEDSDLEHHH 219

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 37.2 bits (87), Expect = 6e-04
 Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 19/98 (19%)

Query: 37  NTILHLASRYEHEELALEILK-LCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYE 95
           +T L+ A    H     +I++ L  +     N +             N+  ++AL+ A  
Sbjct: 107 STALYWACHGGH----KDIVEMLFTQPNIELNQQ-------------NKLGDTALHAAAW 149

Query: 96  RGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
           +G  D+V+ LL          +     +  +A +A   
Sbjct: 150 KGYADIVQLLLAK-GARTDLRNIEKKLAFDMATNAACA 186

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 44.1 bits (105), Expect = 3e-06
 Identities = 16/103 (15%), Positives = 29/103 (28%), Gaps = 25/103 (24%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYV 92
              LH A+  E  ++         ++L       +               +    +ALY 
Sbjct: 63  EFPLHQAATLEDTKIV--------KILLFSGLDDSQF-------------DDKGNTALYY 101

Query: 93  AYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGT 135
           A + G    VK  +      +     G  TS + A     +  
Sbjct: 102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSI 144

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 10/103 (9%), Positives = 23/103 (22%), Gaps = 26/103 (25%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML---AAPNDKFETPTDSWVVHMMNRNKESALYVA 93
            T  + A       +                                       S +++ 
Sbjct: 130 KTSFYHAVMLNDVSIV--------SYFLSEIPSTFD-------------LAILLSCIHIT 168

Query: 94  YERGRHDVVKQLLNYPSVSLLEMD-DGLTTSLHVAASAGHLGT 135
            + G  D++  LL+Y   S    +       + +A     +  
Sbjct: 169 IKNGHVDMMILLLDY-MTSTNTNNSLLFIPDIKLAIDNKDIEM 210

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 37.5 bits (88), Expect = 5e-04
 Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 18/97 (18%)

Query: 37  NTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYER 96
           NT L+ A    + +     +K    ++      ++T                  Y A   
Sbjct: 96  NTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTS----------------FYHAVML 139

Query: 97  GRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
               +V   L+    S  ++   L + +H+    GH+
Sbjct: 140 NDVSIVSYFLSE-IPSTFDLAILL-SCIHITIKNGHV 174

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 37.1 bits (87), Expect = 8e-04
 Identities = 19/102 (18%), Positives = 31/102 (30%), Gaps = 30/102 (29%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYV 92
           ++  + A    +  L           L    A  N                   E  L+ 
Sbjct: 32  HSASYYAIADNNVRLV--------CTLLNAGALKNLL---------------ENEFPLHQ 68

Query: 93  AYERGRHDVVKQLLNY-PSVSLLEMDDGLTTSLHVAASAGHL 133
           A       +VK LL      S  + DD   T+L+ A  +G++
Sbjct: 69  AATLEDTKIVKILLFSGLDDS--QFDDKGNTALYYAVDSGNM 108

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 43.3 bits (103), Expect = 5e-06
 Identities = 10/97 (10%), Positives = 25/97 (25%), Gaps = 5/97 (5%)

Query: 37  NTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYER 96
              L+L+ R     L  E+L    +       +     +   V          +  A + 
Sbjct: 245 TVPLYLSVRAAMVLLTKELL----QKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP 300

Query: 97  GRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
            + +V++ L       ++   +               
Sbjct: 301 SKQEVLQLLQEK-LDEVVRSLNTGAGGAVKRKKKAAP 336

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 41.4 bits (98), Expect = 3e-05
 Identities = 12/101 (11%), Positives = 27/101 (26%), Gaps = 34/101 (33%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYV 92
            T LHLA ++   + A        + L       +                 + +  +++
Sbjct: 54  CTALHLACKFGCVDTA--------KYLASVGEVHSLW---------------HGQKPIHL 90

Query: 93  AYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
           A    + D+V  L+          + G      +       
Sbjct: 91  AVMANKTDLVVALVEGAK------ERGQ-MPESLLNECDER 124

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 40.6 bits (96), Expect = 5e-05
 Identities = 17/113 (15%), Positives = 27/113 (23%), Gaps = 37/113 (32%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYV 92
           N+ LH A     E++A                  N +             +      LY+
Sbjct: 212 NSHLHWAILINWEDVA--------MRFVEMGIDVNME-------------DNEHTVPLYL 250

Query: 93  AYERGRHDVVKQLLNYPSVSL------------LEMDDGLTTSLHVAASAGHL 133
           +       + K+LL    V L            L         +  AA     
Sbjct: 251 SVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQ 303

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 39.9 bits (94), Expect = 8e-05
 Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 13/97 (13%)

Query: 37  NTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYER 96
            T L  A  + + E   +++       ++             +   N+   S L+ A   
Sbjct: 174 ETPLMRAMEFRNREAL-DLMMDTVPSKSSLR-----------LDYANKQGNSHLHWAILI 221

Query: 97  GRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
              DV  + +    + +   D+  T  L+++  A  +
Sbjct: 222 NWEDVAMRFVEM-GIDVNMEDNEHTVPLYLSVRAAMV 257

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 39.9 bits (94), Expect = 8e-05
 Identities = 19/105 (18%), Positives = 33/105 (31%), Gaps = 27/105 (25%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYV 92
            T LH       E   LE++K+    L    A+P  K             ++  E+ L  
Sbjct: 139 QTALHWCVGLGPE--YLEMIKI----LVQLGASPTAK-------------DKADETPLMR 179

Query: 93  AYERGRHDVVKQLLNYPSVS----LLEMDDGLTTSLHVAASAGHL 133
           A E    + +  +++         L   +    + LH A      
Sbjct: 180 AMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWE 224

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 28/101 (27%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYV 92
              +H+A+R    +            L     +P  +             NR   +AL++
Sbjct: 21  MEKIHVAARKGQTDEV--------RRLIETGVSPTIQ-------------NRFGCTALHL 59

Query: 93  AYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
           A + G  D  K L +   V    +  G    +H+A  A   
Sbjct: 60  ACKFGCVDTAKYLASVGEV--HSLWHGQ-KPIHLAVMANKT 97

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 43.2 bits (103), Expect = 5e-06
 Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 21/103 (20%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYV 92
              L  A     +     I  L    L    A  N +                 ++ L +
Sbjct: 183 RNALIHALLSSDDSDVEAITHL----LLDHGADVNVR-------------GERGKTPLIL 225

Query: 93  AYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGT 135
           A E+    +V++LL    + + + D    T+L +A        
Sbjct: 226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI 268

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 41.3 bits (98), Expect = 3e-05
 Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 15/108 (13%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYV 92
            T    A+ Y   +          + L    A  N + +          + +   +AL  
Sbjct: 106 FTAFMEAAVYGKVKAL--------KFLYKRGANVNLRRK---TKEDQERLRKGGATALMD 154

Query: 93  AYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV 140
           A E+G  +V+K LL+     +   D+    +L  A  +        + 
Sbjct: 155 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAIT 202

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 18/111 (16%), Positives = 29/111 (26%), Gaps = 36/111 (32%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYV 92
            T   LA+     +L         ++     A  N+              +    +A   
Sbjct: 73  ATPFLLAAIAGSVKLL--------KLFLSKGADVNEC-------------DFYGFTAFME 111

Query: 93  AYERGRHDVVKQLL----------NYPSVSLLEMDDGLTTSLHVAASAGHL 133
           A   G+   +K L                       G  T+L  AA  GH+
Sbjct: 112 AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGG-ATALMDAAEKGHV 161

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 37.5 bits (88), Expect = 6e-04
 Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 25/101 (24%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYV 92
           N +L  A + E  +L         + L    A  N +                  + L+ 
Sbjct: 6   NHLLIKAVQNEDVDLV--------QQLLEGGANVNFQ------------EEEGGWTPLHN 45

Query: 93  AYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
           A +  R D+V+ LL +     +       T   +AA AG +
Sbjct: 46  AVQMSREDIVELLLRH-GADPVLRKKNGATPFLLAAIAGSV 85

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 43.4 bits (103), Expect = 6e-06
 Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 18/108 (16%)

Query: 37  NTILHLASRYEHEE----LALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYV 92
            T+LH  +     E    L +   K C    A  N               + ++ + L +
Sbjct: 126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM-------------DCDENTPLML 172

Query: 93  AYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV 140
           A    R  +V  L+          +    ++LH AA+    G    ++
Sbjct: 173 AVLARRRRLVAYLMKA-GADPTIYNKSERSALHQAAANRDFGMMVYML 219

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 6/99 (6%)

Query: 37  NTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYER 96
            T L + +  E  +  +   KL  E  A  +       DS           +AL+ A + 
Sbjct: 236 MTALMIVAHNEGRD-QVASAKLLVEKGAKVDYDGAARKDS-----EKYKGRTALHYAAQV 289

Query: 97  GRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGT 135
               +VK L+     +  + D+   T + +AA  G +  
Sbjct: 290 SNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEV 328

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 27/104 (25%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYV 92
           NT L LA       L           L    A P                N+++ SAL+ 
Sbjct: 167 NTPLMLAVLARRRRLV--------AYLMKAGADPTIY-------------NKSERSALHQ 205

Query: 93  AYERGRHDVVKQLLNYPSV--SLLEMDDGLTTSLHVAASAGHLG 134
           A       ++  +LN   +   + E+D    T+L + A      
Sbjct: 206 AAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD 249

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 11/99 (11%), Positives = 23/99 (23%), Gaps = 20/99 (20%)

Query: 37  NTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYER 96
                      +      +       L  P +                     L+     
Sbjct: 62  LYPNPQGYGNGN----DFLGDFNHTNLQIPTEP-------------EPESPIKLHTEAA- 103

Query: 97  GRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGT 135
           G + + + +    SV++++      T LH  AS      
Sbjct: 104 GSYAITEPITRE-SVNIIDPRHNR-TVLHWIASNSSAEK 140

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 42.9 bits (102), Expect = 9e-06
 Identities = 27/97 (27%), Positives = 35/97 (36%), Gaps = 18/97 (18%)

Query: 37  NTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYER 96
            T LH A+R  H      ++KL  E  A PN                    + L++A   
Sbjct: 81  QTPLHCAARIGH----TNMVKLLLENNANPNLA-------------TTAGHTPLHIAARE 123

Query: 97  GRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
           G  + V  LL     S   M     T LHVAA  G +
Sbjct: 124 GHVETVLALLEK-EASQACMTKKGFTPLHVAAKYGKV 159

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 41.3 bits (98), Expect = 3e-05
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 26/103 (25%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYV 92
            T LH+A+R  H E+A        + L    A  N K              ++ ++ L+ 
Sbjct: 48  ETPLHMAARAGHTEVA--------KYLLQNKAKVNAK-------------AKDDQTPLHC 86

Query: 93  AYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGT 135
           A   G  ++VK LL   + +         T LH+AA  GH+ T
Sbjct: 87  AARIGHTNMVKLLLEN-NANPNLATTAGHTPLHIAAREGHVET 128

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.6 bits (96), Expect = 5e-05
 Identities = 26/101 (25%), Positives = 37/101 (36%), Gaps = 26/101 (25%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYV 92
            T LH+A++Y    +A        E+L    A PN                +N  + L+V
Sbjct: 147 FTPLHVAAKYGKVRVA--------ELLLERDAHPNAA-------------GKNGLTPLHV 185

Query: 93  AYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
           A      D+VK LL     S         T LH+AA    +
Sbjct: 186 AVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQV 225

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.6 bits (96), Expect = 5e-05
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 18/97 (18%)

Query: 37  NTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYER 96
            T LH+A  + + ++   +L        +P+                 N  + L++A ++
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPRG----GSPHSP-------------AWNGYTPLHIAAKQ 222

Query: 97  GRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
            + +V + LL Y   S         T LH+AA  GH 
Sbjct: 223 NQVEVARSLLQY-GGSANAESVQGVTPLHLAAQEGHA 258

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.6 bits (96), Expect = 6e-05
 Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 26/108 (24%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYV 92
            T LHLA++  H E+          +L    A  N               N++  + L++
Sbjct: 246 VTPLHLAAQEGHAEMV--------ALLLSKQANGNLG-------------NKSGLTPLHL 284

Query: 93  AYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV 140
             + G   V   L+ +  V +        T LHVA+  G++     L+
Sbjct: 285 VAQEGHVPVADVLIKH-GVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.2 bits (95), Expect = 8e-05
 Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 18/96 (18%)

Query: 38  TILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERG 97
           T LH+A+R  H    +E +    E  A+                  +   + L+VA + G
Sbjct: 115 TPLHIAAREGH----VETVLALLEKEASQACM-------------TKKGFTPLHVAAKYG 157

Query: 98  RHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
           +  V + LL               T LHVA    +L
Sbjct: 158 KVRVAELLLER-DAHPNAAGKNGLTPLHVAVHHNNL 192

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 26/103 (25%), Positives = 35/103 (33%), Gaps = 26/103 (25%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYV 92
            T LH+AS   H  +         + L    A+PN               N   E+ L++
Sbjct: 15  LTPLHVASFMGHLPIV--------KNLLQRGASPNVS-------------NVKVETPLHM 53

Query: 93  AYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGT 135
           A   G  +V K LL      +        T LH AA  GH   
Sbjct: 54  AARAGHTEVAKYLLQN-KAKVNAKAKDDQTPLHCAARIGHTNM 95

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 37.5 bits (88), Expect = 6e-04
 Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 26/100 (26%)

Query: 38  TILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYVA 93
           T LHL ++  H  +A        ++L       +                R   + L+VA
Sbjct: 280 TPLHLVAQEGHVPVA--------DVLIKHGVMVDAT-------------TRMGYTPLHVA 318

Query: 94  YERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
              G   +VK LL +    +        + LH AA  GH 
Sbjct: 319 SHYGNIKLVKFLLQH-QADVNAKTKLGYSPLHQAAQQGHT 357

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 37.1 bits (87), Expect = 9e-04
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 26/103 (25%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYV 92
            T LH+A++    E+A          L     + N +             +    + L++
Sbjct: 213 YTPLHIAAKQNQVEVA--------RSLLQYGGSANAE-------------SVQGVTPLHL 251

Query: 93  AYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGT 135
           A + G  ++V  LL+  +   L    GL T LH+ A  GH+  
Sbjct: 252 AAQEGHAEMVALLLSKQANGNLGNKSGL-TPLHLVAQEGHVPV 293

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 18/106 (16%), Positives = 29/106 (27%), Gaps = 17/106 (16%)

Query: 37  NTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYER 96
                LA+   H  +   + +L P  + A               M+      A  +A E 
Sbjct: 129 YQAFRLAAENGHLHVLNRLCELAPTEIMA---------------MIQAENYHAFRLAAEN 173

Query: 97  GRHDVVKQLLNYPSVSLLEM--DDGLTTSLHVAASAGHLGTFANLV 140
           G   V+ +L          M   +        A   GH      L+
Sbjct: 174 GHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLL 219

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 19/100 (19%), Positives = 30/100 (30%), Gaps = 15/100 (15%)

Query: 35  SSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAY 94
            S  I  +A+       AL+ L L                              A  +A 
Sbjct: 91  KSEVICFVAAITGCSS-ALDTLCLLLTSDEIVKVI-------------QAENYQAFRLAA 136

Query: 95  ERGRHDVVKQLLNY-PSVSLLEMDDGLTTSLHVAASAGHL 133
           E G   V+ +L    P+  +  +      +  +AA  GHL
Sbjct: 137 ENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHL 176

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 30/104 (28%)

Query: 38  TILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYVA 93
           T LHLA       +          +L    A+P                +R+ ++A ++A
Sbjct: 48  TPLHLAVITTLPSVV--------RLLVTAGASPMAL-------------DRHGQTAAHLA 86

Query: 94  YERGRHDVVKQLLNYPSVSLLEMD----DGLTTSLHVAASAGHL 133
            E      ++ LL+  +   L+++    DGL T+LHVA +    
Sbjct: 87  CEHRSPTCLRALLDSAAPGTLDLEARNYDGL-TALHVAVNTECQ 129

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 14/99 (14%)

Query: 37  NTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYER 96
           +T LH+A    +      ++ L  +     +               N  +++ L++A   
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY-------------NNLRQTPLHLAVIT 56

Query: 97  GRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGT 135
               VV+ L+     S + +D    T+ H+A        
Sbjct: 57  TLPSVVRLLVTA-GASPMALDRHGQTAAHLACEHRSPTC 94

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 40.1 bits (95), Expect = 7e-05
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 15/100 (15%)

Query: 37  NTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYER 96
            T  HLA  +        +L            +             N +  +AL+VA   
Sbjct: 80  QTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR-------------NYDGLTALHVAVNT 126

Query: 97  GRHDVVKQLLNY-PSVSLLEMDDGLTTSLHVAASAGHLGT 135
              + V+ LL     +  +++  G  + L  A     L  
Sbjct: 127 ECQETVQLLLERGADIDAVDIKSGR-SPLIHAVENNSLSM 165

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 37.0 bits (87), Expect = 7e-04
 Identities = 18/103 (17%), Positives = 30/103 (29%), Gaps = 26/103 (25%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYV 92
            + L  A       +         ++L    A  N +               +  SAL+ 
Sbjct: 151 RSPLIHAVENNSLSMV--------QLLLQHGANVNAQ-------------MYSGSSALHS 189

Query: 93  AYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGT 135
           A  RG   +V+ L+          +    T L VA S   +  
Sbjct: 190 ASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVARSRRVIDI 231

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 41.2 bits (98), Expect = 2e-05
 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 25/100 (25%)

Query: 38  TILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYVA 93
           T L  A+   H E          + L    A  + K             +    + L++A
Sbjct: 46  TPLMEAAENNHLEAV--------KYLIKAGALVDPK-------------DAEGSTCLHLA 84

Query: 94  YERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
            ++G ++VV+ LL+   + +   DDG  T +  A    H+
Sbjct: 85  AKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 39.3 bits (93), Expect = 1e-04
 Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 26/101 (25%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYV 92
            + LH A+   H ++          ML    A  +               + ++ + L  
Sbjct: 12  RSPLHAAAEAGHVDIC--------HMLVQAGANIDTC-------------SEDQRTPLME 50

Query: 93  AYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
           A E    + VK L+      +   D   +T LH+AA  GH 
Sbjct: 51  AAENNHLEAVKYLIKA-GALVDPKDAEGSTCLHLAAKKGHY 90

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 38.5 bits (91), Expect = 2e-04
 Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 26/103 (25%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYV 92
           N  LH A+     ++A        E+L       +               N + +S L++
Sbjct: 145 NICLHWAAFSGCVDIA--------EILLAAKCDLHAV-------------NIHGDSPLHI 183

Query: 93  AYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGT 135
           A    R+D V   L+     +   +    T L  A+    + +
Sbjct: 184 AARENRYDCVVLFLSR-DSDVTLKNKEGETPLQCASLNSQVWS 225

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 37.0 bits (87), Expect = 8e-04
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 26/102 (25%)

Query: 38  TILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYVA 93
           T +  A+ Y+H +L         ++L    +  N +             +  +   L+ A
Sbjct: 113 TPMIWATEYKHVDLV--------KLLLSKGSDINIR-------------DNEENICLHWA 151

Query: 94  YERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGT 135
              G  D+ + LL      L  ++    + LH+AA       
Sbjct: 152 AFSGCVDIAEILLAA-KCDLHAVNIHGDSPLHIAARENRYDC 192

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 40.9 bits (97), Expect = 4e-05
 Identities = 22/103 (21%), Positives = 33/103 (32%), Gaps = 25/103 (24%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYV 92
            T LHLA+RY   + A        + L    A  N +             +    + L+ 
Sbjct: 58  ETALHLAARYSRSDAA--------KRLLEASADANIQ-------------DNMGRTPLHA 96

Query: 93  AYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGT 135
           A       V + L+   +  L       TT L +AA     G 
Sbjct: 97  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGM 139

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 36.7 bits (86), Expect = 9e-04
 Identities = 23/103 (22%), Positives = 32/103 (31%), Gaps = 26/103 (25%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYV 92
            T L LA+R   E +         E L    A  N               +   +SAL+ 
Sbjct: 125 TTPLILAARLAVEGML--------EDLINSHADVNAV-------------DDLGKSALHW 163

Query: 93  AYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGT 135
           A      D    LL     +    ++   T L +AA  G   T
Sbjct: 164 AAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYET 205

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 40.2 bits (95), Expect = 4e-05
 Identities = 22/106 (20%), Positives = 29/106 (27%), Gaps = 32/106 (30%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYV 92
              L  A+     E            L    A PN               N      + V
Sbjct: 13  ADWLATAAARGRVEEV--------RALLEAGANPNAP-------------NSYGRRPIQV 51

Query: 93  AYERGRHDVVKQLLNY---PSVSLLEMDDGLTTSLHVAASAGHLGT 135
               G   V + LL +   P+ +       LT  +H AA  G L T
Sbjct: 52  MM-MGSARVAELLLLHGAEPNCA---DPATLTRPVHDAAREGFLDT 93

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 40.9 bits (97), Expect = 4e-05
 Identities = 19/102 (18%), Positives = 29/102 (28%), Gaps = 29/102 (28%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYV 92
            + +H A+R  H E            L       + K               +  + LY+
Sbjct: 158 ASPIHEAARRGHVECV--------NSLIAYGGNIDHK-------------ISHLGTPLYL 196

Query: 93  AYERGRHDVVKQLLNY-PSVSLLEMDDGLTTSLHVAASAGHL 133
           A E  +   VK+LL     V       G  + LH        
Sbjct: 197 ACENQQRACVKKLLESGADV---NQGKGQDSPLHAVVRTASE 235

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 40.2 bits (95), Expect = 7e-05
 Identities = 22/102 (21%), Positives = 34/102 (33%), Gaps = 29/102 (28%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYV 92
            + LH A    H            ++L    A  N                 +  + L+ 
Sbjct: 93  VSPLHEACLGGHLSCV--------KILLKHGAQVNGV-------------TADWHTPLFN 131

Query: 93  AYERGRHDVVKQLLNY-PSVSLLEMDDGLTTSLHVAASAGHL 133
           A   G  D V  LL +  SV   + +  L + +H AA  GH+
Sbjct: 132 ACVSGSWDCVNLLLQHGASV---QPESDLASPIHEAARRGHV 170

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 11/100 (11%), Positives = 26/100 (26%), Gaps = 27/100 (27%)

Query: 38  TILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYVA 93
           T L+LA   +             + L    A  N                + ++S L+  
Sbjct: 192 TPLYLACENQQRACV--------KKLLESGADVN--------------QGKGQDSPLHAV 229

Query: 94  YERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
                 ++   L+++        +      + +      L
Sbjct: 230 VRTASEELACLLMDF-GADTQAKNAEGKRPVELVPPESPL 268

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 37.1 bits (87), Expect = 8e-04
 Identities = 16/101 (15%), Positives = 30/101 (29%), Gaps = 27/101 (26%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYV 92
           +T L  A      +           +L    A+   +               +  S ++ 
Sbjct: 126 HTPLFNACVSGSWDCV--------NLLLQHGASVQPE--------------SDLASPIHE 163

Query: 93  AYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
           A  RG  + V  L+ Y   ++      L T L++A      
Sbjct: 164 AARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQR 203

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 40.5 bits (96), Expect = 5e-05
 Identities = 22/103 (21%), Positives = 33/103 (32%), Gaps = 25/103 (24%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYV 92
            T LHLA+RY   + A        + L    A  N +             +    + L+ 
Sbjct: 26  ETALHLAARYSRSDAA--------KRLLEASADANIQ-------------DNMGRTPLHA 64

Query: 93  AYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGT 135
           A       V + L+   +  L       TT L +AA     G 
Sbjct: 65  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGM 107

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 40.1 bits (95), Expect = 6e-05
 Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 28/121 (23%)

Query: 37  NTILHLASRYEHEELALEILKLC-------------PEMLAAPNDKFETPTDSWV----- 78
             +L  A++ + +++  EIL+               P  +A  N+  E            
Sbjct: 7   GALLEAANQRDTKKVK-EILQDTTYQVDEVDTEGNTPLNIAVHNNDIEI-----AKALID 60

Query: 79  ----VHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLG 134
               +++ N   +S    A  +GR +++  +L + +  L + +     +L  AA  GH+ 
Sbjct: 61  RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID 120

Query: 135 T 135
            
Sbjct: 121 N 121

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 37.0 bits (87), Expect = 6e-04
 Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 22/101 (21%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML---AAPNDKFETPTDSWVVHMMNRNKESALYVA 93
           ++    A      E+           +   A P+           ++  NR   +AL  A
Sbjct: 73  DSPYLYAGAQGRTEIL--------AYMLKHATPD-----------LNKHNRYGGNALIPA 113

Query: 94  YERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLG 134
            E+G  D VK LL      +   +D   T+L  A       
Sbjct: 114 AEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGN 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 39.7 bits (94), Expect = 6e-05
 Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 26/100 (26%)

Query: 38  TILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYVA 93
           T L  A+ +    +         E L    A P                 + +ESAL +A
Sbjct: 38  TPLMWAAAHGQIAVV--------EFLLQNGADPQLL-------------GKGRESALSLA 76

Query: 94  YERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
             +G  D+VK LL+   V + E D    T L  A    H+
Sbjct: 77  CSKGYTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHV 115

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 38.6 bits (91), Expect = 1e-04
 Identities = 22/103 (21%), Positives = 29/103 (28%), Gaps = 32/103 (31%)

Query: 38  TILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYVA 93
             L  A+     E            L    A PN               NR     + V 
Sbjct: 14  AGLATAAARGQVETV--------RQLLEAGADPNAL-------------NRFGRRPIQVM 52

Query: 94  YERGRHDVVKQLLNY---PSVSLLEMDDGLTTSLHVAASAGHL 133
              G   V + LL +   P+ +       LT  +H AA  G L
Sbjct: 53  M-MGSAQVAELLLLHGAEPNCA---DPATLTRPVHDAAREGFL 91

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 20/100 (20%)

Query: 37  NTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYER 96
           N  LH A          E+L   P   +    K             +++    L+ +   
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKP---SLLLQK-------------DQDGRIPLHWSVSF 46

Query: 97  GRHDVVKQLLNY---PSVSLLEMDDGLTTSLHVAASAGHL 133
             H++   LL+     ++     D G  T  H+A S G+L
Sbjct: 47  QAHEITSFLLSKMENVNLDDYPDDSGW-TPFHIACSVGNL 85

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 16/101 (15%), Positives = 30/101 (29%), Gaps = 23/101 (22%)

Query: 38  TILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYVA 93
             LH +  ++  E+           L       N               + +  +  ++A
Sbjct: 38  IPLHWSVSFQAHEIT--------SFLLSKMENVNLDDYP----------DDSGWTPFHIA 79

Query: 94  YERGRHDVVKQLL-NYPSVSLLEMDDGLTTSLHVAASAGHL 133
              G  +VVK L        L ++ +   T LH+A      
Sbjct: 80  CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 25/100 (25%)

Query: 38  TILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYVA 93
           T LHLA   +  E++        + L    A+   K             ++  +  L+ A
Sbjct: 109 TCLHLAVGKKWFEVS--------QFLIENGASVRIK-------------DKFNQIPLHRA 147

Query: 94  YERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
              G   +++ L      ++   D    T L  A + GH 
Sbjct: 148 ASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG 187

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 37.4 bits (88), Expect = 4e-04
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 18/99 (18%)

Query: 38  TILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERG 97
           T  H+A    +    LE++K   +    P+           ++ +     + L++A  + 
Sbjct: 74  TPFHIACSVGN----LEVVKSLYDRPLKPD-----------LNKITNQGVTCLHLAVGKK 118

Query: 98  RHDVVKQLLNY-PSVSLLEMDDGLTTSLHVAASAGHLGT 135
             +V + L+    SV     D      LH AAS G L  
Sbjct: 119 WFEVSQFLIENGASVR--IKDKFNQIPLHRAASVGSLKL 155

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 17/97 (17%)

Query: 37  NTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYER 96
              +    R  +      +      +    ND          ++  + +  S L+ A   
Sbjct: 6   MDDIFTQCREGNAVAV-RLW-----LDNTEND----------LNQGDDHGFSPLHWACRE 49

Query: 97  GRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
           GR  VV+ L+      +  M+ G  T LH+AAS GH 
Sbjct: 50  GRSAVVEMLIMR-GARINVMNRGDDTPLHLAASHGHR 85

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 37.4 bits (88), Expect = 4e-04
 Identities = 23/100 (23%), Positives = 36/100 (36%), Gaps = 26/100 (26%)

Query: 38  TILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYVA 93
           + LH A R     +         EML    A  N               NR  ++ L++A
Sbjct: 41  SPLHWACREGRSAVV--------EMLIMRGARINVM-------------NRGDDTPLHLA 79

Query: 94  YERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
              G  D+V++LL Y    +  +++     LH A   G  
Sbjct: 80  ASHGHRDIVQKLLQY-KADINAVNEHGNVPLHYACFWGQD 118

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 15/99 (15%)

Query: 37  NTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYER 96
            T LH A    H +   ++ +L     A  N+K             N++  + L+VA ER
Sbjct: 212 ETALHCAVASLHPKR-KQVAELLLRKGANVNEK-------------NKDFMTPLHVAAER 257

Query: 97  GRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGT 135
             +DV++ L  +    +  +D    T+LH AA AGHL T
Sbjct: 258 AHNDVMEVLHKH-GAKMNALDSLGQTALHRAALAGHLQT 295

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 26/101 (25%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYV 92
           +T LHLA+ Y    +         ++L    A  + K             ++     L+ 
Sbjct: 59  STPLHLAAGYNRVRIV--------QLLLQHGADVHAK-------------DKGGLVPLHN 97

Query: 93  AYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
           A   G ++V + LL +    +  MD    T LH AAS   +
Sbjct: 98  ACSYGHYEVTELLLKH-GACVNAMDLWQFTPLHEAASKNRV 137

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 22/153 (14%), Positives = 46/153 (30%), Gaps = 28/153 (18%)

Query: 3   ERLFETILKGDVPNFLNLVHEDEAIIKQTV------PGSSNTILHLAS---RYEHEELAL 53
             +F+ + + +     +L+   +   K+        P +  T L  A         +   
Sbjct: 15  RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74

Query: 54  EILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLN------ 107
            +L +  +  +       + TDS          ++AL++A ER    +V  L+       
Sbjct: 75  LLLDVARKTDSLKQFVNASYTDS------YYKGQTALHIAIERRNMTLVTLLVENGADVQ 128

Query: 108 -------YPSVSLLEMDDGLTTSLHVAASAGHL 133
                  +               L +AA    L
Sbjct: 129 AAANGDFFKKTKGRPGFYFGELPLSLAACTNQL 161

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 37.5 bits (87), Expect = 5e-04
 Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 9/96 (9%)

Query: 37  NTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYER 96
           NT+LH         +                     PT   +  + NR   + L +A   
Sbjct: 185 NTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLK-LEEITNRKGLTPLALAASS 243

Query: 97  GRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGH 132
           G+  V+  +L        E+ +      H AA   H
Sbjct: 244 GKIGVLAYILQ------REIHE--PECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 37.5 bits (87), Expect = 6e-04
 Identities = 25/131 (19%), Positives = 40/131 (30%), Gaps = 12/131 (9%)

Query: 11  KGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKF 70
              +  F+N  + D     QT        LH+A    +  L   +++   ++ AA N  F
Sbjct: 83  TDSLKQFVNASYTDSYYKGQTA-------LHIAIERRNMTLVTLLVENGADVQAAANGDF 135

Query: 71  ETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLN--YPSVSLLEMDDGLTTSLHVAA 128
              T            E  L +A    +  +VK LL   +    +   D    T LH   
Sbjct: 136 FKKTK---GRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALV 192

Query: 129 SAGHLGTFANL 139
                      
Sbjct: 193 EVADNTVDNTK 203

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 37.1 bits (86), Expect = 9e-04
 Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 5/106 (4%)

Query: 38  TILHLASRYEHEELALEILKLCPEMLAAPNDKFE---TPTDSWVVHMMNRNKESALYVAY 94
             L LA+      +  + L       A  + +     T   + V    N    +    + 
Sbjct: 150 LPLSLAACTNQLAIV-KFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSM 208

Query: 95  ERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV 140
                 +  +L     +  +    GLT  L +AAS+G +G  A ++
Sbjct: 209 YNEILILGAKLHPTLKLEEITNRKGLT-PLALAASSGKIGVLAYIL 253

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 15/100 (15%), Positives = 25/100 (25%), Gaps = 26/100 (26%)

Query: 38  TILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYVA 93
           T LHLA   +   +         E+L    A P  +                  + L  A
Sbjct: 194 TPLHLAVEAQAASVL--------ELLLKAGADPTAR-------------MYGGRTPLGSA 232

Query: 94  YERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
             R    + + L  +      E      +    + S    
Sbjct: 233 LLRPNPILARLLRAH-GAPEPEDGGDKLSPCSSSGSDSDS 271

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 15/97 (15%)

Query: 37  NTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYER 96
           +T LHLA  ++HE    + L                      + + N   ++AL++A   
Sbjct: 10  DTALHLAVIHQHEPFL-DFL-------------LGFSAGHEYLDLQNDLGQTALHLAAIL 55

Query: 97  GRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
           G    V++L       +L  + G  T+LH+A      
Sbjct: 56  GEASTVEKLYAA-GAGVLVAERGGHTALHLACRVRAH 91

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 24/100 (24%), Positives = 32/100 (32%), Gaps = 26/100 (26%)

Query: 38  TILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYVA 93
           T L  AS +   E            L    A P+                + +ESAL +A
Sbjct: 38  TPLIWASAFGEIETV--------RFLLEWGADPHIL-------------AKERESALSLA 76

Query: 94  YERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
              G  D+V  LL    V +   D    T L  A    H+
Sbjct: 77  STGGYTDIVGLLLER-DVDINIYDWNGGTPLLYAVRGNHV 115

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 37.0 bits (87), Expect = 5e-04
 Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 19/98 (19%)

Query: 37  NTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYER 96
           +  +H  +     +   E L+    ++  P+++  TP                L  A   
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTP----------------LIWASAF 46

Query: 97  GRHDVVKQLLNY-PSVSLLEMDDGLTTSLHVAASAGHL 133
           G  + V+ LL +        +     ++L +A++ G+ 
Sbjct: 47  GEIETVRFLLEWGADPH--ILAKERESALSLASTGGYT 82

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 83  NRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
           N   +  L  A + G  + VK+L    SV+  +++   +T LH AA    +
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRV 55

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 20/104 (19%), Positives = 30/104 (28%), Gaps = 27/104 (25%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYV 92
              +  A++Y   E            L                       ++   + L+ 
Sbjct: 10  TWDIVKATQYGIYERC--------RELVEAGYDVRQP-------------DKENVTLLHW 48

Query: 93  AYERGRHDVVKQLLNY-PSVSLLEMDDGLTTSLHVAASAGHLGT 135
           A    R D+VK  ++    V  L  D    T LH A   GHL  
Sbjct: 49  AAINNRIDLVKYYISKGAIVDQLGGDLNS-TPLHWATRQGHLSM 91

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 36.9 bits (87), Expect = 4e-04
 Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 26/101 (25%)

Query: 37  NTILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYV 92
            T LHLA+R  H E+         ++L    A  N K             ++N  + L++
Sbjct: 3   RTPLHLAARNGHLEVV--------KLLLEAGADVNAK-------------DKNGRTPLHL 41

Query: 93  AYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
           A   G  +VVK LL      +   D    T LH+AA  GHL
Sbjct: 42  AARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHL 81

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 37.6 bits (88), Expect = 4e-04
 Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 37  NTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYER 96
           NT+LH+     ++  A ++  L        + K             N    +   +A   
Sbjct: 155 NTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELV-------PNNQGLTPFKLAGVE 207

Query: 97  GRHDVVKQLLNY 108
           G   + + L+  
Sbjct: 208 GNIVMFQHLMQK 219

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 36.6 bits (86), Expect = 4e-04
 Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 38/106 (35%)

Query: 38  TILHLASRYEHEELALEILKLCPEML----AAPNDKFETPTDSWVVHMMNRNKESALYVA 93
           T LH A++  H E          + L    A  N +             +++  + L++A
Sbjct: 11  TPLHNAAKNGHAEEV--------KKLLSKGADVNAR-------------SKDGNTPLHLA 49

Query: 94  YERGRHDVVKQLL------NYPSVSLLEMDDGLTTSLHVAASAGHL 133
            + G  ++VK LL      N              T  H+A   GH 
Sbjct: 50  AKNGHAEIVKLLLAKGADVN-------ARSKDGNTPEHLAKKNGHH 88

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 36.6 bits (86), Expect = 7e-04
 Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 17/97 (17%)

Query: 37  NTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYER 96
             ++H A+R       L+ L+   E  A  N +             +      L++A + 
Sbjct: 71  FAVIHDAARAGF----LDTLQTLLEFQADVNIE-------------DNEGNLPLHLAAKE 113

Query: 97  GRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
           G   VV+ L+ + + ++   +    T+  +A   G  
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN 150

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 37.2 bits (87), Expect = 7e-04
 Identities = 19/102 (18%), Positives = 29/102 (28%), Gaps = 26/102 (25%)

Query: 38  TILHLASRYEHEELALEILKLCPEML---AAPNDKFETPTDSWVVHMMNRNKESALYVAY 94
           T    A+R   E+            L      +               + N  +AL    
Sbjct: 47  TPWWTAARKADEQAL--------SQLLEDRDVDAV-------------DENGRTALLFVA 85

Query: 95  ERGRHDVVKQLLNY-PSVSLLEMDDGLTTSLHVAASAGHLGT 135
             G    V+ L      +   +M  GL T+LH+AA       
Sbjct: 86  GLGSDKCVRLLAEAGADLDHRDMRGGL-TALHMAAGYVRPEV 126

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 36.8 bits (86), Expect = 8e-04
 Identities = 17/98 (17%), Positives = 28/98 (28%), Gaps = 21/98 (21%)

Query: 37  NTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYER 96
              L    R    +            +A        P              + L  +   
Sbjct: 6   QVSLPPGKRTNLRKTG-SER------IAHGMRVKFNP-----------LPLALLLDSSLE 47

Query: 97  GRHDVVKQLLNY-PSVSLLEMDDGLTTSLHVAASAGHL 133
           G  D+V++++      S    +D   T+LH A  AGH 
Sbjct: 48  GEFDLVQRIIYEVDDPS--LPNDEGITALHNAVCAGHT 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	140
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.97
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.96
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.96
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.96
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.96
2rfa_A	232	Transient receptor potential cation channel subfa	99.96
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
2rfa_A	232	Transient receptor potential cation channel subfa	99.96
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.96
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.96
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.96
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.96
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.96
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.96
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.96
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.96
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.96
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.96
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.95
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.95
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.95
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.95
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.95
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.95
2pnn_A	273	Transient receptor potential cation channel subfa	99.95
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.95
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.95
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.95
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.95
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.95
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.95
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.95
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.95
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.95
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.95
2etb_A	256	Transient receptor potential cation channel subfam	99.95
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.95
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.95
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.94
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.94
2pnn_A	273	Transient receptor potential cation channel subfa	99.94
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.94
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.94
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.94
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.94
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.94
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.93
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.93
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.93
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.92
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.92
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.92
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.91
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.91
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.91
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.91
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.9
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.9
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.89
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.89
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.89
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.89
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.89
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.88
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.88
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.88
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.88
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.88
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.88
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.87
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.86
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.85
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.85
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.84
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.84
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.81

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=5.4e-34  Score=175.37  Aligned_cols=134  Identities=22%  Similarity=0.273  Sum_probs=124.4

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC---------
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP---------   73 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~---------   73 (140)
                      ++|+.|++.|+.++|+.|++.+.++  +..+..|+||||+|+..++.+++++|++.|++ ++.+|.+|.||         
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv--n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-~~~~d~~g~TpLh~A~~~g~   82 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV--NASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGH   82 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-hhhhccCCCCHHHHHHHcCC
Confidence            5799999999999999999998887  77889999999999999999999999999998 68899999999         


Q ss_pred             --------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           74 --------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 --------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                              ..+..++.++..|+||||+|+..|+.+++++|++.|++++.++..|+| |||+|+..|+.+++++|+
T Consensus        83 ~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~T-pL~~A~~~g~~~iv~~Ll  156 (169)
T 4gpm_A           83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRT-PLDLAREHGNEEVVKLLE  156 (169)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence                    344557888999999999999999999999999999999999999999 999999999999999884

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.97  E-value=3.6e-31  Score=157.40  Aligned_cols=119  Identities=18%  Similarity=0.135  Sum_probs=112.0

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhc
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHM   81 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   81 (140)
                      .++||.|++.|+.+.++.|++.+.++  +..+..|.||||+|+..|+.+++++|++.++++                 +.
T Consensus        15 ~t~l~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----------------~~   75 (136)
T 2jab_A           15 GKKLLEAARAGQDDEVRILMANGADV--NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-----------------NA   75 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-----------------TC
T ss_pred             cHHHHHHHHhCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-----------------Cc
Confidence            37899999999999999999998776  667889999999999999999999999999986                 67


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           82 MNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        82 ~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      .+..|.||||+|+..|+.+++++|++.|++++..+..|.| |||+|+..|+.+++++|+
T Consensus        76 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-pl~~A~~~~~~~~~~~Ll  133 (136)
T 2jab_A           76 VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKT-AFDISIGNGNEDLAEILQ  133 (136)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCC-HHHHHHHCCCHHHHHHHH
Confidence            8889999999999999999999999999999999999999 999999999999999884

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=4.3e-31  Score=161.82  Aligned_cols=135  Identities=16%  Similarity=0.122  Sum_probs=121.7

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      +||||.|+..|+.+.++.|++.+...  +..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||        
T Consensus         4 ~t~L~~A~~~g~~~~v~~ll~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            4 SLSVHQLAAQGEMLYLATRIEQENVI--NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALSLACSKG   80 (167)
T ss_dssp             CCCHHHHHHTTCHHHHHHHHHHSSCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHT
T ss_pred             cchHHHHHHCCCHHHHHHHHHcCCCc--CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcC
Confidence            57899999999999999999997665  66888999999999999999999999999987 67888899998        


Q ss_pred             ---------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           74 ---------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 ---------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                               ..+..++..+..|.||||+|+..|+.+++++|++.|++++..+..|.| |+++|+..|+.+++++|+
T Consensus        81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~~~~~~L~  155 (167)
T 3v31_A           81 YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYN-SMDLAVALGYRSVQQVIE  155 (167)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC-HHHHHHHcCcHHHHHHHH
Confidence                     233446778889999999999999999999999999999999999999 999999999999999874

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=1.1e-30  Score=160.60  Aligned_cols=135  Identities=15%  Similarity=0.145  Sum_probs=121.9

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC---------
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP---------   73 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~---------   73 (140)
                      +|||.|+..|+.+.++.|++.++... +..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||         
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            4 LSIHQLAAQGELDQLKEHLRKGDNLV-NKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGGY   81 (172)
T ss_dssp             CCHHHHHHTTCHHHHHHHHTTCSGGG-GCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTC
T ss_pred             hhHHHHHHcCCHHHHHHHHHcCcccc-cCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-chhhcccCCCHHHHHHHCCC
Confidence            68999999999999999999987643 56788999999999999999999999999998 67888899998         


Q ss_pred             --------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           74 --------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 --------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                              ..+..++..+..|.||||+|+..|+.+++++|++.|++++..+..|.| |||+|+..|+.+++++|+
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t-~l~~A~~~~~~~~~~~L~  155 (172)
T 3v30_A           82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYT-PMDLAVALGYRKVQQVIE  155 (172)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC-HHHHHHHhCcHHHHHHHH
Confidence                    344556778889999999999999999999999999999999999999 999999999999999874

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=9.6e-31  Score=160.68  Aligned_cols=134  Identities=21%  Similarity=0.177  Sum_probs=120.8

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC---------
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP---------   73 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~---------   73 (140)
                      ++|+.|++.|+.+++++|++.+.++  +..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||         
T Consensus        16 ~~l~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~   92 (169)
T 2y1l_E           16 KKLLEAARAGRDDEVRILMANGADV--NAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALFGH   92 (169)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC
T ss_pred             chHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCC
Confidence            6899999999999999999998776  66788999999999999999999999999988 67888899998         


Q ss_pred             --------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           74 --------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 --------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                              ..+..++..+..|.||||+|+..|+.+++++|++.|++++.++..|.| |+++|+..|+.+++++|+
T Consensus        93 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~~~~~~L~  166 (169)
T 2y1l_E           93 LEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKT-AFDISIDNGNEDLAEILQ  166 (169)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC-HHHHHHHhCCHHHHHHHH
Confidence                    233445777889999999999999999999999999999999999999 999999999999999874

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=2e-30  Score=156.87  Aligned_cols=133  Identities=20%  Similarity=0.177  Sum_probs=119.2

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      .++|+.|++.|+.+.++.|++.+...  + .+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||        
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~--~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   78 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPF--T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC--C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHT
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCC--C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcC
Confidence            47899999999999999999987654  2 577899999999999999999999999988 67888889998        


Q ss_pred             ---------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923           74 ---------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus        74 ---------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                               ..+..++.++..|.||||+|+..|+.+++++|++.|++++.++..|.| |+|+|+..|+.+++++|
T Consensus        79 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t-~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           79 HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKT-AFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC-HHHHHHHcCCHHHHHHh
Confidence                     344556788899999999999999999999999999999999999999 99999999999999987

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.97  E-value=2.9e-31  Score=157.81  Aligned_cols=118  Identities=14%  Similarity=0.058  Sum_probs=111.1

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhc
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHM   81 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   81 (140)
                      .+|||.|++.|+.++++.|++.+.++  +..+..|.||||+|+. |+.+++++|++.+.++                 +.
T Consensus        13 ~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-----------------~~   72 (136)
T 1d9s_A           13 DAGLATAAARGQVETVRQLLEAGADP--NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-----------------NC   72 (136)
T ss_dssp             SCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-----------------SC
T ss_pred             ccHHHHHHHcCCHHHHHHHHHcCCCc--CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-----------------CC
Confidence            47999999999999999999998776  6788999999999999 9999999999999986                 67


Q ss_pred             cccC-CCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           82 MNRN-KESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        82 ~~~~-~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      ++.. |+||||+|+..|+.+++++|++.|++++.++..|.| |||+|+..|+.+++++|+
T Consensus        73 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t-pl~~A~~~~~~~~~~~Ll  131 (136)
T 1d9s_A           73 ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRL-PVDLAEEQGHRDIARYLH  131 (136)
T ss_dssp             CBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSC-HHHHHHHHTCHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence            8888 999999999999999999999999999999999999 999999999999999884

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=6.8e-31  Score=164.25  Aligned_cols=135  Identities=21%  Similarity=0.155  Sum_probs=121.5

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      .||||.|+..|+.++++.|++.+.++  +..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||        
T Consensus        36 ~t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~  112 (192)
T 2rfm_A           36 RTPLMVACMLGMENAIDKLVENFDKL--EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDFSGKTPLMWSIIFG  112 (192)
T ss_dssp             CCHHHHHHHHTCGGGHHHHHHHHCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhcccc--ccccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHcC
Confidence            47899999999999999999987765  66788899999999999999999999999988 67888899999        


Q ss_pred             ---------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           74 ---------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 ---------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                               ..+..++.++..|.||||+|+..|+.+++++|++.|++++.++..|.| |+++|+..|+.+++++|+
T Consensus       113 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t-~l~~A~~~~~~~~v~~Ll  187 (192)
T 2rfm_A          113 YSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLT-AEASARIFGRQEVIKIFT  187 (192)
T ss_dssp             CHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCB-HHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCC-HHHHHHHhCcHHHHHHHH
Confidence                     234446778889999999999999999999999999999999999999 999999999999999874

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=8.8e-31  Score=159.57  Aligned_cols=134  Identities=16%  Similarity=0.128  Sum_probs=119.0

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      .++|+.|++.|+.+.++.|++.+.++  +..+..|.||||+|+. |+.+++++|++.+.+ ++.++..|.||        
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            6 GNELASAAARGDLEQLTSLLQNNVNV--NAQNGFGRTALQVMKL-GNPEIARRLLLRGAN-PDLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTTSCCCT--TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHT
T ss_pred             hhHHHHHHHcCCHHHHHHHHhCCCCc--cccCccCccHHHHHHc-CcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcC
Confidence            57999999999999999999988776  6678899999999999 999999999999988 67888899998        


Q ss_pred             ---------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCc-cccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           74 ---------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSV-SLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 ---------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~-~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                               ..+..++.++..|.||||+|+..|+.+++++|++.|++ ++..+..|.| |||+|+..|+.+++++|+
T Consensus        82 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t-~l~~A~~~~~~~~~~~Ll  157 (162)
T 1ihb_A           82 FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT-ACDLARLYGRNEVVSLMQ  157 (162)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCc-HHHHHHHcCCHHHHHHHH
Confidence                     23445677888999999999999999999999999887 5888888999 999999999999999874

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.97  E-value=5e-30  Score=166.52  Aligned_cols=136  Identities=18%  Similarity=0.089  Sum_probs=105.8

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      .||||.|+..|+.++++.|++.+.++  +..+..|.||||+|+..|+.+++++|++.+....+..+..|.||        
T Consensus        58 ~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  135 (253)
T 1yyh_A           58 ETALHLAARYSRSDAAKRLLEASADA--NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA  135 (253)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHT
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcC
Confidence            36899999999999999999887776  66778889999999999999999999988875577888888888        


Q ss_pred             ---------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           74 ---------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 ---------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                               ..+..++..+..|+||||+|+..|+.+++++|++.|++++.++..|.| |||+|+..|+.+++++|+
T Consensus       136 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t-pL~~A~~~~~~~~v~~Ll  210 (253)
T 1yyh_A          136 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREET-PLFLAAREGSYETAKVLL  210 (253)
T ss_dssp             CSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC-HHHHHHHCCCHHHHHHHH
Confidence                     223334566667777777777777777777777777777777777777 777777777777777663

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.97  E-value=1.3e-29  Score=148.28  Aligned_cols=119  Identities=26%  Similarity=0.314  Sum_probs=111.7

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhc
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHM   81 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   81 (140)
                      .|+||.|++.|+.+++++|++.+.++  +..+..|.||||+|+..|+.+++++|++.+.++                 +.
T Consensus         3 ~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-----------------~~   63 (126)
T 1n0r_A            3 RTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-----------------NA   63 (126)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-----------------TC
T ss_pred             ccHHHHHHHcCcHHHHHHHHHcCCCC--CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-----------------cc
Confidence            57999999999999999999997776  667889999999999999999999999999885                 67


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           82 MNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        82 ~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      ++..|.||||+|+..|+.+++++|++.|++++.++..|.| ||++|+..|+.+++++|+
T Consensus        64 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~~~~~~Ll  121 (126)
T 1n0r_A           64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT-PLHLAARNGHLEVVKLLL  121 (126)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHH
T ss_pred             cCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCC-HHHHHHHcCcHHHHHHHH
Confidence            8889999999999999999999999999999999999999 999999999999999884

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=1.3e-29  Score=161.51  Aligned_cols=135  Identities=19%  Similarity=0.085  Sum_probs=97.8

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      .||||.|+..|+.+++++|++.+.++  +..+..|.||||+|+..|+.+++++|++.++...+..+..|.+|        
T Consensus        26 ~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  103 (223)
T 2f8y_A           26 ETALHLAARYSRSDAAKRLLEASADA--NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA  103 (223)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHT
T ss_pred             CchHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhC
Confidence            36788888888888888888877665  55677788888888888888888888888775567777777777        


Q ss_pred             ---------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923           74 ---------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus        74 ---------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                               ..+..++..+..|.||||+|+..|+.+++++|++.|++++..+..|.| |||+|+..|+.+++++|
T Consensus       104 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~L  177 (223)
T 2f8y_A          104 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREET-PLFLAAREGSYETAKVL  177 (223)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHH
T ss_pred             cHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcC-HHHHHHHcCCHHHHHHH
Confidence                     122334555666777777777777777777777777777766666777 77777777777777665

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.97  E-value=2.7e-30  Score=156.88  Aligned_cols=118  Identities=14%  Similarity=0.054  Sum_probs=110.5

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhc
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHM   81 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   81 (140)
                      .++||.|++.|+.+.+++|++.+.++  +..+..|.||||+|+ .|+.+++++|++.|.++                 +.
T Consensus        13 ~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-----------------~~   72 (156)
T 1bi7_B           13 ADWLATAAARGRVEEVRALLEAGANP--NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-----------------NC   72 (156)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCT--TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-----------------CC
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-----------------CC
Confidence            47999999999999999999998776  678889999999985 99999999999999886                 67


Q ss_pred             cccCCCc-HHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           82 MNRNKES-ALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        82 ~~~~~~t-~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      ++..|+| |||+|+..|+.+++++|++.|++++.++..|.| |||+|+..|+.+++++|+
T Consensus        73 ~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t-pl~~A~~~~~~~~v~~Ll  131 (156)
T 1bi7_B           73 ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRL-PVDLAEELGHRDVARYLR  131 (156)
T ss_dssp             CCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCC-HHHHHHHHTCHHHHHHHS
T ss_pred             cCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCC-HHHHHHHhCHHHHHHHHH
Confidence            8889998 999999999999999999999999999999999 999999999999999985

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=1.6e-29  Score=158.76  Aligned_cols=136  Identities=18%  Similarity=0.119  Sum_probs=109.1

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      .||||.|++.|+.++++.|++.+.++  +..+..|.||||+|+..|+.+++++|++.+....+..+..|.||        
T Consensus        40 ~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  117 (201)
T 3hra_A           40 NTPLNIAVHNNDIEIAKALIDRGADI--NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG  117 (201)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcC
Confidence            36788888888888888888777665  55667778888888888888888888866554467777778887        


Q ss_pred             ---------Cch-hhhhccccCCCcHHHHHHHcCC-----HHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhh
Q 038923           74 ---------TDS-WVVHMMNRNKESALYVAYERGR-----HDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFAN  138 (140)
Q Consensus        74 ---------~~~-~~~~~~~~~~~t~l~~A~~~~~-----~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~  138 (140)
                               ..+ ..++..+..|.||||+|+..++     .+++++|++.|++++.++..|.| |||+|+..|+.+++++
T Consensus       118 ~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t-~l~~A~~~~~~~~~~~  196 (201)
T 3hra_A          118 HIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRT-AMDYANQKGYTEISKI  196 (201)
T ss_dssp             CHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHHTCHHHHHH
T ss_pred             CHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCC-HHHHHHHcCCHhHHHH
Confidence                     122 4567778889999999998887     89999999999999999989999 9999999999999988


Q ss_pred             hC
Q 038923          139 LV  140 (140)
Q Consensus       139 Ll  140 (140)
                      |+
T Consensus       197 Ll  198 (201)
T 3hra_A          197 LA  198 (201)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.97  E-value=2.4e-29  Score=164.93  Aligned_cols=137  Identities=17%  Similarity=0.095  Sum_probs=110.8

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHH-hhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC-------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAII-KQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP-------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~-~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~-------   73 (140)
                      .||||.|++.|+.+++++|++.+.... .+..+..|.||||+|+..|+.+++++|+++|++ ++..+..|.||       
T Consensus        10 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~   88 (282)
T 1oy3_D           10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-VLVAERGGHTALHLACRV   88 (282)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTSCCHHHHHTTT
T ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHc
Confidence            479999999999999999998876521 256788899999999999999999999999988 67788888888       


Q ss_pred             ----------Cc-----------------------------------------------hhhhhccccCCCcHHHHHHHc
Q 038923           74 ----------TD-----------------------------------------------SWVVHMMNRNKESALYVAYER   96 (140)
Q Consensus        74 ----------~~-----------------------------------------------~~~~~~~~~~~~t~l~~A~~~   96 (140)
                                ..                                               ...++..+..|.||||+|+..
T Consensus        89 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~  168 (282)
T 1oy3_D           89 RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH  168 (282)
T ss_dssp             TCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHT
T ss_pred             CCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHc
Confidence                      00                                               122456677788888888888


Q ss_pred             CCHHHHHHHHcCCCccccccCC-CCChHHHHHHHcCCHHHHhhhC
Q 038923           97 GRHDVVKQLLNYPSVSLLEMDD-GLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        97 ~~~~~~~~L~~~~~~~~~~~~~-~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      |+.+++++|++.|++++..+.. |.| |||+|+..|+.+++++|+
T Consensus       169 g~~~~v~~Ll~~g~~~~~~~~~~g~t-pL~~A~~~~~~~~v~~Ll  212 (282)
T 1oy3_D          169 KDAEMVRLLRDAGADLNKPEPTCGRT-PLHLAVEAQAASVLELLL  212 (282)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTTCCC-HHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCcC-HHHHHHHcCCHHHHHHHH
Confidence            8888888888888888877754 778 888888888888888774

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=2.2e-29  Score=152.57  Aligned_cols=134  Identities=22%  Similarity=0.242  Sum_probs=113.6

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      .++|+.|+..|+.+.++.|++. .....+..+..|.||||+ +..|+.+++++|++.|.+ ++.+|..|.||        
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             chHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcC
Confidence            4789999999999999999988 322225678889999999 999999999999999988 67788888888        


Q ss_pred             ---------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           74 ---------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 ---------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                               ..+..++.++..|+||||+|+..|+.+++++|++. ++++.++..|.| |||+|+..|+.+++++|+
T Consensus        80 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t-~l~~A~~~~~~~~v~~Ll  153 (156)
T 1bd8_A           80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLT-PLELALQRGAQDLVDILQ  153 (156)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCC-HHHHHHHSCCHHHHHHHH
T ss_pred             cHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCC-HHHHHHHcCcHHHHHHHH
Confidence                     23344567788899999999999999999999988 888888888999 999999999999998874

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.96  E-value=2.6e-29  Score=160.84  Aligned_cols=132  Identities=19%  Similarity=0.175  Sum_probs=69.3

Q ss_pred             HHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC----------
Q 038923            4 RLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP----------   73 (140)
Q Consensus         4 ~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~----------   73 (140)
                      |||.|+..|+.+++++|++.+.++  +..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||          
T Consensus        43 ~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~  119 (231)
T 3aji_A           43 ALHWACSAGHTEIVEFLLQLGVPV--NDKDDAGWSPLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRH  119 (231)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCS--CCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHcCcHHHHHHHHHhCCCC--CCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCH
Confidence            444444444444444444443332  23334444444444444444444444444444 33444444444          


Q ss_pred             -------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923           74 -------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus        74 -------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                             ..+..++..+..|.||||+|+..|+.+++++|++.|++++.++..|.| |||+|+..|+.+++++|
T Consensus       120 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~L  191 (231)
T 3aji_A          120 EIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNT-PLHLACDEERVEEAKFL  191 (231)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCC-HHHHHHHCCCHHHHHHH
Confidence                   112223445555666666666666666666666666666666666666 66666666666666665

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.96  E-value=9.6e-30  Score=148.78  Aligned_cols=115  Identities=18%  Similarity=0.233  Sum_probs=104.8

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhc
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHM   81 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   81 (140)
                      +++||.|+..|+.+.++.|++.+.++  +..+..|.||||+|+..|+.+++++|++.+.++                 +.
T Consensus         8 ~~~l~~A~~~~~~~~v~~ll~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----------------~~   68 (123)
T 3aaa_C            8 DKEFMWALKNGDLDEVKDYVAKGEDV--NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-----------------NA   68 (123)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCT--TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-----------------TC
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCc--CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-----------------Cc
Confidence            47999999999999999999998776  678889999999999999999999999999986                 67


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHH
Q 038923           82 MNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTF  136 (140)
Q Consensus        82 ~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~  136 (140)
                      ++..|+||||+|+..|+.+++++|++.|++++.++..|.| |+|+|...+..+++
T Consensus        69 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t-~l~~A~~~~~~~ll  122 (123)
T 3aaa_C           69 PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLT-AFEATDNQAIKALL  122 (123)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHCCCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC-HHHHhCCHHHHHHh
Confidence            8899999999999999999999999999999999999999 99999655555444

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.96  E-value=1e-28  Score=157.72  Aligned_cols=136  Identities=17%  Similarity=0.191  Sum_probs=79.0

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhC--CcccCCCCCCCCCC------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLC--PEMLAAPNDKFETP------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~--~~~~~~~~~~~~~~------   73 (140)
                      +||||.|++.|+.+.++.|++.++... ...+..|.||||+|+..|+.+++++|++.+  .+.....+..|.||      
T Consensus         3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            3 NYPLHQACMENEFFKVQELLHSKPSLL-LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             ccHHHHHHHhCCHHHHHHHHhcCcccc-ccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            356777777777777777776665542 235566667777777777777777777666  33222255666666      


Q ss_pred             -----------Cch--hhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923           74 -----------TDS--WVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus        74 -----------~~~--~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                                 ..+  ..++..+..|.||||+|+..|+.+++++|++.|++++..+..|.| |||+|+..|+.+++++|
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~L  159 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI-PLHRAASVGSLKLIELL  159 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCC-HHHHHHHcCCHHHHHHH
Confidence                       111  333444455555555555555555555555555555555555555 55555555555555554

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.96  E-value=5.2e-29  Score=159.07  Aligned_cols=137  Identities=18%  Similarity=0.097  Sum_probs=121.3

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhc-CCCCCCcHHHHHHhhCcHHHHHHHHhhC--CcccCCCCCCCCCC-----
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQT-VPGSSNTILHLASRYEHEELALEILKLC--PEMLAAPNDKFETP-----   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~-~~~~g~t~l~~A~~~g~~~~~~~Ll~~~--~~~~~~~~~~~~~~-----   73 (140)
                      .||||.|+..|+.++++.|++.++...... .+..|.||||+|+..|+.+++++|++.+  .+ .+..+..|.||     
T Consensus        37 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~  115 (228)
T 2dzn_A           37 RIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAV  115 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc-cccCCcCCCCHHHHHH
Confidence            479999999999999999999984442244 7789999999999999999999999998  55 67888899999     


Q ss_pred             ------------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCC-CccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           74 ------------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYP-SVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 ------------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~-~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                                  ..+..++.++..|.||||+|+..|+.+++++|++.| ++++.++..|+| |||+|+..|+.+++++|+
T Consensus       116 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t-~L~~A~~~~~~~~v~~Ll  194 (228)
T 2dzn_A          116 GKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT-PLFHALAEGHGDAAVLLV  194 (228)
T ss_dssp             HTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCC-HHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence                        234456778889999999999999999999999999 999999999999 999999999999999884

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.96  E-value=3.7e-29  Score=160.26  Aligned_cols=135  Identities=19%  Similarity=0.171  Sum_probs=112.5

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhh-chHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCccc----CCCCCCCCCC---
Q 038923            2 DERLFETILKGDVPNFLNLVHE-DEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEML----AAPNDKFETP---   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~----~~~~~~~~~~---   73 (140)
                      +||||.|++.|+.+.++.|++. +.++  +..+..|+||||+|+..|+.+++++|++.+++..    ...|..|.||   
T Consensus         4 ~t~L~~A~~~g~~~~v~~Ll~~~g~~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            4 ESPLLLAAKENDVQALSKLLKFEGCEV--HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             TCHHHHHHHTTCHHHHHHHHTTTCSCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhcCCCc--ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence            5789999999999999999987 5555  5678889999999999999999999999988642    4566788888   


Q ss_pred             --------------Cchhhhhcc-------------ccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHH
Q 038923           74 --------------TDSWVVHMM-------------NRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHV  126 (140)
Q Consensus        74 --------------~~~~~~~~~-------------~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~  126 (140)
                                    ..+..++..             +..|.||||+|+..|+.+++++|++.|++++.++..|.| |||+
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t-~L~~  160 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNT-VLHI  160 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC-HHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC-HHHH
Confidence                          112222333             337999999999999999999999999999999999999 9999


Q ss_pred             HHHcCCHHHH----hhh
Q 038923          127 AASAGHLGTF----ANL  139 (140)
Q Consensus       127 A~~~g~~~~~----~~L  139 (140)
                      |+..|+.+++    ++|
T Consensus       161 A~~~~~~~~~~~i~~~L  177 (232)
T 2rfa_A          161 LILQPNKTFACQMYNLL  177 (232)
T ss_dssp             HHTCSCHHHHHHHHHHH
T ss_pred             HHHcCChHHHHHHHHHH
Confidence            9999999988    665

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.96  E-value=5.1e-29  Score=164.85  Aligned_cols=134  Identities=24%  Similarity=0.203  Sum_probs=102.6

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCc-------
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTD-------   75 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~-------   75 (140)
                      ||||.|+..|+.++++.|++.+.++  +..+..|.||||+|+..|+.+++++|++.|++ +...+..|.||..       
T Consensus        75 t~L~~A~~~g~~~~v~~Ll~~ga~~--~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~  151 (299)
T 1s70_B           75 TALHQACIDDNVDMVKFLVENGANI--NQPDNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAM  151 (299)
T ss_dssp             BHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHhcch
Confidence            5677777777777777777766555  45666677777777777777777777777766 5566667777600       


Q ss_pred             -----------hhh--------------------------hhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCC
Q 038923           76 -----------SWV--------------------------VHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDD  118 (140)
Q Consensus        76 -----------~~~--------------------------~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~  118 (140)
                                 +..                          ....+..|.||||+|+..|+.+++++|++.|++++..+..
T Consensus       152 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~  231 (299)
T 1s70_B          152 EELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD  231 (299)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT
T ss_pred             HHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCC
Confidence                       000                          0113467899999999999999999999999999999999


Q ss_pred             CCChHHHHHHHcCCHHHHhhhC
Q 038923          119 GLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       119 ~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      |.| |||+|+..|+.+++++|+
T Consensus       232 g~t-pL~~A~~~~~~~~v~~Ll  252 (299)
T 1s70_B          232 GWT-PLHAAAHWGKEEACRILV  252 (299)
T ss_dssp             CCC-HHHHHHHTTCHHHHHHHH
T ss_pred             CCc-HHHHHHhcCCHHHHHHHH
Confidence            999 999999999999999884

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=5.5e-29  Score=152.14  Aligned_cols=134  Identities=23%  Similarity=0.267  Sum_probs=83.9

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      +++|+.|++.|+.+.++.|++..+.. .+..+..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||        
T Consensus         9 ~~~l~~A~~~g~~~~v~~ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   86 (165)
T 3twr_A            9 DRQLLEAAKAGDVETVKKLCTVQSVN-CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACSYG   86 (165)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCTTTTT-CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCC-ccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCCCCCHHHHHHHcC
Confidence            36899999999999999999865432 244667788999999999999999999999887 44444444444        


Q ss_pred             ---------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923           74 ---------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus        74 ---------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                               ..+..++.++..|+||||+|+..|+.+++++|++.|++++.++..|.| |+|+|+. |+.+++++|
T Consensus        87 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t-~l~~a~~-~~~~i~~~L  159 (165)
T 3twr_A           87 HYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT-PLDLVKD-GDTDIQDLL  159 (165)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-TGGGSCT-TCHHHHHHH
T ss_pred             cHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCC-hhHhHhc-CChHHHHHH
Confidence                     112223344444455555555555555555555555555555544555 5555433 444544444

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.96  E-value=1.4e-28  Score=157.56  Aligned_cols=137  Identities=18%  Similarity=0.225  Sum_probs=118.2

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHh---hcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCC----------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIK---QTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPND----------   68 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~---~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~----------   68 (140)
                      .||||.|+..|+.++++.|++.++....   +..+..|.||||+|+..|+.+++++|++.++++ +..+.          
T Consensus        38 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~  116 (232)
T 2rfa_A           38 ETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHN  116 (232)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccc
Confidence            4799999999999999999999877532   335568999999999999999999999999874 44433          


Q ss_pred             ---CCCCC-----------------CchhhhhccccCCCcHHHHHHHcCCHHHH----HHHHcCCCcc------ccccCC
Q 038923           69 ---KFETP-----------------TDSWVVHMMNRNKESALYVAYERGRHDVV----KQLLNYPSVS------LLEMDD  118 (140)
Q Consensus        69 ---~~~~~-----------------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~----~~L~~~~~~~------~~~~~~  118 (140)
                         .|.||                 ..+..++.+|..|+||||+|+..|+.+++    ++|++.|+++      +.++..
T Consensus       117 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~  196 (232)
T 2rfa_A          117 LIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQ  196 (232)
T ss_dssp             SCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTT
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCC
Confidence               78888                 34455678899999999999999999988    9999999987      578889


Q ss_pred             CCChHHHHHHHcCCHHHHhhhC
Q 038923          119 GLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       119 ~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      |.| |||+|+..|+.+++++|+
T Consensus       197 g~t-pl~~A~~~g~~~~v~~Ll  217 (232)
T 2rfa_A          197 GLT-PFKLAGVEGNIVMFQHLM  217 (232)
T ss_dssp             SCC-HHHHHHHHTCHHHHHHHH
T ss_pred             CCC-HHHHHHHcCCHHHHHHHH
Confidence            999 999999999999999985

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.96  E-value=3.7e-29  Score=164.03  Aligned_cols=136  Identities=21%  Similarity=0.145  Sum_probs=118.8

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcc-------------------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEM-------------------   62 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~-------------------   62 (140)
                      .||||.|+..|+.++++.|++.+.++  +..+..|.||||+|+..|+.+++++|++.+++.                   
T Consensus        46 ~t~L~~A~~~g~~~~v~~Ll~~ga~~--~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~  123 (282)
T 1oy3_D           46 QTALHLAAILGEASTVEKLYAAGAGV--LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT  123 (282)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCS--SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcch
Confidence            47999999999999999999998877  677889999999999999999999999987641                   


Q ss_pred             ---------------------------cCCCCCCCCCC-----------------Cchhhhhcccc-CCCcHHHHHHHcC
Q 038923           63 ---------------------------LAAPNDKFETP-----------------TDSWVVHMMNR-NKESALYVAYERG   97 (140)
Q Consensus        63 ---------------------------~~~~~~~~~~~-----------------~~~~~~~~~~~-~~~t~l~~A~~~~   97 (140)
                                                 ++..+..|.||                 ..+..++..+. .|+||||+|+..|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~  203 (282)
T 1oy3_D          124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ  203 (282)
T ss_dssp             --------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             hcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcC
Confidence                                       35567788888                 22334455554 4999999999999


Q ss_pred             CHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           98 RHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        98 ~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      +.+++++|++.|++++.++..|.| |||+|+..|+.+++++|+
T Consensus       204 ~~~~v~~Ll~~gad~~~~d~~g~t-pL~~A~~~~~~~~v~~Ll  245 (282)
T 1oy3_D          204 AASVLELLLKAGADPTARMYGGRT-PLGSALLRPNPILARLLR  245 (282)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHTSSCHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCcccccCCCC-HHHHHHHcCCcHHHHHHH
Confidence            999999999999999999999999 999999999999999984

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=3.1e-29  Score=153.26  Aligned_cols=105  Identities=18%  Similarity=0.114  Sum_probs=92.2

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      .||||.|+..|+.+++++|++.+.++  +..+..|.||||+|+..|+.+++++|++.+.+ ++.+|..|.||        
T Consensus        43 ~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~  119 (165)
T 3twr_A           43 STPLHFAAGYNRVSVVEYLLQHGADV--HAKDKGGLVPLHNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKG  119 (165)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred             CCHHHHHHHcChHHHHHHHHhcCCCC--CccCCCCCCHHHHHHHcCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcC
Confidence            37999999999999999999998776  67888999999999999999999999999998 68889999999        


Q ss_pred             ---------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCC
Q 038923           74 ---------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPS  110 (140)
Q Consensus        74 ---------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~  110 (140)
                               ..+..++.++..|.||+++|+. |+.+++++|++.|+
T Consensus       120 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          120 KYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             CHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence                     2344567889999999999877 99999999998875

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.96  E-value=7.9e-29  Score=160.88  Aligned_cols=134  Identities=17%  Similarity=0.158  Sum_probs=119.7

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhch-HHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC-------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDE-AIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP-------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~-~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~-------   73 (140)
                      .||||.|+..|+.++++.|++.++ ..  +..+..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||       
T Consensus        91 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~  167 (253)
T 1yyh_A           91 RTPLHAAVSADAQGVFQILIRNRATDL--DARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAV  167 (253)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHSTTSCT--TCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC-TTCBCTTSCBHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCc--cccCCCCCcHHHHHHHcChHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHc
Confidence            378999999999999999998876 33  56778899999999999999999999999887 67888889998       


Q ss_pred             ----------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923           74 ----------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus        74 ----------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                                ..+..++.++..|.||||+|+..|+.+++++|+++|++++.++..|.| |+++|+..|+.+++++|
T Consensus       168 ~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t-pl~~A~~~g~~~i~~~l  242 (253)
T 1yyh_A          168 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL-PRDIAQERMHHDIVRLL  242 (253)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCC-HHHHHHHcCCHHHHHHH
Confidence                      234456788899999999999999999999999999999999999999 99999999999999987

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.96  E-value=1.2e-29  Score=150.84  Aligned_cols=118  Identities=20%  Similarity=0.178  Sum_probs=110.6

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhc
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHM   81 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   81 (140)
                      .|+||.|+..|+.++++.|++.+.++  +..+..|.||||+|+..|+.+++++|++.+.++                 +.
T Consensus        11 ~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-----------------~~   71 (137)
T 3c5r_A           11 ETLLHIASIKGDIPSVEYLLQNGSDP--NVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-----------------NT   71 (137)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCS--CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-----------------TC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC--CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-----------------cC
Confidence            47999999999999999999998776  678889999999999999999999999999986                 67


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923           82 MNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus        82 ~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                      ++..|.||||+|+..|+.+++++|++.|++++.++..|.| |+++|+..+..+++++|
T Consensus        72 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t-pl~~A~~~~~~~~l~~l  128 (137)
T 3c5r_A           72 TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLR-PVDYTDDESMKSLLLLP  128 (137)
T ss_dssp             CCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-GGGGCCCHHHHHHHSCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC-HHHHHhhccHHHHHhhc
Confidence            8889999999999999999999999999999999999999 99999999999988876

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.96  E-value=1.7e-28  Score=165.00  Aligned_cols=134  Identities=20%  Similarity=0.173  Sum_probs=117.9

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCC-CCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVP-GSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~-~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      |+|+.|++.|++++|+.|++.+.++  +..+ ..|+||||+|+..|+.+++++|+++|++ +..++..+.++        
T Consensus        27 t~L~~Av~~g~~~~V~~LL~~Gadv--n~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~  103 (337)
T 4g8k_A           27 HLLIKAVQNEDVDLVQQLLEGGANV--NFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFILAAIAG  103 (337)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHTCCT--TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHT
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCC--CccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc-hhhhccCCCchhHHHHhcc
Confidence            6899999999999999999998877  4454 5699999999999999999999999998 67788888887        


Q ss_pred             ---------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCcccccc----------CCCCChHHHHHHHcCCHH
Q 038923           74 ---------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEM----------DDGLTTSLHVAASAGHLG  134 (140)
Q Consensus        74 ---------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~----------~~~~t~~l~~A~~~g~~~  134 (140)
                               .....++..+..|.||+|+|+..|+.+++++|++.|++++...          ..|.| |||+|+..|+.+
T Consensus       104 ~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T-~L~~A~~~g~~~  182 (337)
T 4g8k_A          104 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT-ALMDAAEKGHVE  182 (337)
T ss_dssp             CHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCC-HHHHHHHHTCHH
T ss_pred             cchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCc-HHHHHHHCCCHH
Confidence                     3444567888999999999999999999999999998876543          35788 999999999999


Q ss_pred             HHhhhC
Q 038923          135 TFANLV  140 (140)
Q Consensus       135 ~~~~Ll  140 (140)
                      ++++||
T Consensus       183 ~v~~LL  188 (337)
T 4g8k_A          183 VLKILL  188 (337)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999884

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.96  E-value=2.2e-28  Score=157.08  Aligned_cols=133  Identities=22%  Similarity=0.134  Sum_probs=70.5

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC---------
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP---------   73 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~---------   73 (140)
                      ||||.|+..|+.+++++|++.+.++  +..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.+|         
T Consensus        13 t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~   89 (237)
T 3b7b_A           13 SPLHAAAEAGHVDICHMLVQAGANI--DTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL-VDPKDAEGSTCLHLAAKKGH   89 (237)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-CCCCCTTSCCHHHHHHHTTC
T ss_pred             CHHHHHHHcCcHHHHHHHHHcCCCc--CccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHcCC
Confidence            5666666666666666666665544  44555666666666666666666666666655 44555556655         


Q ss_pred             --------Cc-hhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923           74 --------TD-SWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus        74 --------~~-~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                              .. +..++..+..|.||||+|+..|+.+++++|++.|++++..+..|.| |||+|+..|+.+++++|
T Consensus        90 ~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~L  163 (237)
T 3b7b_A           90 YEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENI-CLHWAAFSGCVDIAEIL  163 (237)
T ss_dssp             HHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHHCCHHHHHHH
T ss_pred             HHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCC-HHHHHHHCCCHHHHHHH
Confidence                    11 1222333344444444444444444444444444444444444444 44444444444444443

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.96  E-value=7e-29  Score=162.66  Aligned_cols=117  Identities=21%  Similarity=0.183  Sum_probs=60.9

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhcc
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMM   82 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (140)
                      ||||.|+..|+.++++.|++.++++  +..+..|.||+|+|+..++.+++++|++.|++ ++                .+
T Consensus        88 TpLh~A~~~g~~~~v~~Ll~~~a~~--~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~n----------------~~  148 (269)
T 4b93_B           88 SPLHVAALHGRADLIPLLLKHGANA--GARNADQAVPLHLACQQGHFQVVKCLLDSNAK-PN----------------KK  148 (269)
T ss_dssp             CHHHHHHHTTCTTHHHHHHHTTCCT--TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SC----------------CC
T ss_pred             CHHHHHHHcCcHHHHHHHHhcCCCc--CccCCCCCCccccccccChHHHHHHHHHCCCC-CC----------------CC
Confidence            4555555555555555555554444  33445555555555555555555555555554 34                44


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923           83 NRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus        83 ~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                      +..|+||||+|+..|+.+++++|++.|++++..+..|.| |||+|+..|+.+++++|
T Consensus       149 d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t-~Lh~A~~~g~~~~v~~L  204 (269)
T 4b93_B          149 DLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNT-ALHEAVIEKHVFVVELL  204 (269)
T ss_dssp             CTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCB-HHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCc-HHHHHHHcCCHHHHHHH
Confidence            444555555555555555555555555555555544555 55555555555555444

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.96  E-value=1.5e-28  Score=165.35  Aligned_cols=61  Identities=36%  Similarity=0.311  Sum_probs=54.5

Q ss_pred             hhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           79 VHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        79 ~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      ++.++..|.||||+|+..|+.+++++|++.|++++..+..|+| |||+|+..|+.+++++|+
T Consensus       240 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t-~L~~A~~~~~~~~v~~Ll  300 (351)
T 3utm_A          240 VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQT-ALHRAALAGHLQTCRLLL  300 (351)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHH
T ss_pred             cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCC-HHHHHHHcCcHHHHHHHH
Confidence            4556778899999999999999999999999999999989999 999999999999999874

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.96  E-value=1.9e-28  Score=156.04  Aligned_cols=136  Identities=17%  Similarity=0.142  Sum_probs=121.0

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      .+|||.|+..|+.++++.|++.++... +..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||        
T Consensus        59 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~  136 (223)
T 2f8y_A           59 RTPLHAAVSADAQGVFQILIRNRATDL-DARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVN  136 (223)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHBTTSCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcC
Confidence            378999999999999999999876322 56778899999999999999999999999988 67888899998        


Q ss_pred             ---------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           74 ---------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 ---------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                               ..+..++.++..|.||||+|+..|+.+++++|++.|++++.++..|.| |+++|+..|+.+++++|+
T Consensus       137 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t-~l~~A~~~~~~~i~~~L~  211 (223)
T 2f8y_A          137 NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL-PRDIAQERMHHDIVRLLD  211 (223)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCC-HHHHHHHhcchHHHHHHH
Confidence                     234456778899999999999999999999999999999999999999 999999999999999984

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=1.8e-28  Score=151.72  Aligned_cols=119  Identities=20%  Similarity=0.257  Sum_probs=90.8

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhc
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHM   81 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   81 (140)
                      .++|+.|+..|+.+.++.|++.++... +..+..|.||||+|+..|+.+++++|++.+.++                 +.
T Consensus         6 ~~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----------------~~   67 (179)
T 3f6q_A            6 MDDIFTQCREGNAVAVRLWLDNTENDL-NQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-----------------NV   67 (179)
T ss_dssp             -CCHHHHHHHTCHHHHHHHHHCTTSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-----------------TC
T ss_pred             HHHHHHHHHcCCHHHHHHHHhcCcccc-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-----------------CC
Confidence            367999999999999999999855432 567889999999999999999999999999885                 45


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923           82 MNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus        82 ~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                      .+..|.||||+|+..|+.+++++|++.|++++..+..|.| |||+|+..|+.+++++|
T Consensus        68 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t-~L~~A~~~~~~~~v~~L  124 (179)
T 3f6q_A           68 MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNV-PLHYACFWGQDQVAEDL  124 (179)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCC-HHHHHHHcCCHHHHHHH
Confidence            5566666666666666666666666666666666666666 66666666666666665

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.96  E-value=3.2e-28  Score=155.73  Aligned_cols=136  Identities=21%  Similarity=0.233  Sum_probs=121.4

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      +++|+.|++.|+.+.++.++..++... +..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||        
T Consensus         7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   84 (231)
T 3aji_A            7 NIMICNLAYSGKLDELKERILADKSLA-TRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAG   84 (231)
T ss_dssp             SSHHHHHHHHTCHHHHHHHHHHCGGGG-GCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHT
T ss_pred             cchHHHHHHhCCHHHHHHHHHhchhhh-hcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC-CCCcCCCCCCHHHHHHHcC
Confidence            578999999999999999999877653 45788999999999999999999999999988 67888899999        


Q ss_pred             ---------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           74 ---------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 ---------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                               ..+..++..+..|.||||+|+..|+.+++++|++.|++++..+..|.| |||+|+..|+.+++++|+
T Consensus        85 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll  159 (231)
T 3aji_A           85 XDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDAT-AMHRAAAKGNLKMVHILL  159 (231)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCc-HHHHHHHcCCHHHHHHHH
Confidence                     233445677888999999999999999999999999999999989999 999999999999999874

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.96  E-value=2.8e-28  Score=156.73  Aligned_cols=133  Identities=20%  Similarity=0.211  Sum_probs=70.5

Q ss_pred             HHHHHHHHcCCHHHHHHHhhh----chHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC-----
Q 038923            3 ERLFETILKGDVPNFLNLVHE----DEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP-----   73 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~----~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~-----   73 (140)
                      |+||.|+..|+.+++++|++.    +..+  +..+..|.||||+|+..|+.+++++|++.|.+ ++..+..|.+|     
T Consensus        11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~   87 (241)
T 1k1a_A           11 TPLHIAVVQGNLPAVHRLVNLFQQGGREL--DIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-PMALDRHGQTAAHLAC   87 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHHHTTCCS--CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CcccccCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHH
Confidence            456666666666666655542    2222  33445555566665555555555555555554 34445555555     


Q ss_pred             -------------------------------------------------Cchhhhhccc-cCCCcHHHHHHHcCCHHHHH
Q 038923           74 -------------------------------------------------TDSWVVHMMN-RNKESALYVAYERGRHDVVK  103 (140)
Q Consensus        74 -------------------------------------------------~~~~~~~~~~-~~~~t~l~~A~~~~~~~~~~  103 (140)
                                                                       ..+..++..+ ..|.||||+|+..|+.++++
T Consensus        88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~  167 (241)
T 1k1a_A           88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  167 (241)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHH
Confidence                                                             1111223333 34555555555555555555


Q ss_pred             HHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923          104 QLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus       104 ~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                      +|++.|++++..+..|.| |||+|+..|+.+++++|
T Consensus       168 ~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~L  202 (241)
T 1k1a_A          168 LLLQHGANVNAQMYSGSS-ALHSASGRGLLPLVRTL  202 (241)
T ss_dssp             HHHHTTCCTTCBCTTSCB-HHHHHHHHTCHHHHHHH
T ss_pred             HHHHcCCCCCCcCCCCCC-HHHHHHHcCCHHHHHHH
Confidence            555555555555555555 55555555555555554

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.96  E-value=3.1e-28  Score=156.37  Aligned_cols=136  Identities=18%  Similarity=0.164  Sum_probs=112.2

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      .+|||.|+..|+.+++++|++.+..+  +..+..|.||||+|+..|+.+++++|++.+....+..+..|.+|        
T Consensus        45 ~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  122 (237)
T 3b7b_A           45 RTPLMEAAENNHLEAVKYLIKAGALV--DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK  122 (237)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCC--CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCHHHHHHHhCCHHHHHHHHhCCCCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcC
Confidence            36889999999999999998887665  56777888999999999999999999988854477788888888        


Q ss_pred             ---------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           74 ---------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 ---------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                               ..+..++..+..|.||||+|+..|+.+++++|++.|++++..+..|.| |||+|+..|+.+++++|+
T Consensus       123 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll  197 (237)
T 3b7b_A          123 HVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDS-PLHIAARENRYDCVVLFL  197 (237)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCC-HHHHHHHhCCHhHHHHHH
Confidence                     223345667778888999999999999999999888888888888888 999999999888888774

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=1.3e-28  Score=161.90  Aligned_cols=134  Identities=20%  Similarity=0.212  Sum_probs=92.7

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhch-HHHhhcCCCCCCcHHHHHH-----hhCcHHHHHHHHhhCCcccCCCCCCCCCC---
Q 038923            3 ERLFETILKGDVPNFLNLVHEDE-AIIKQTVPGSSNTILHLAS-----RYEHEELALEILKLCPEMLAAPNDKFETP---   73 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~-~~~~~~~~~~g~t~l~~A~-----~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~---   73 (140)
                      ||||.|+..|+.++++.|++.+. ..  +..+..|.||||+|+     ..++.+++++|++.+.. ....+..|.||   
T Consensus       113 T~Lh~A~~~g~~~~v~~Ll~~g~~~~--~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~  189 (276)
T 4hbd_A          113 TALHYSVSHANFPVVQQLLDSGVCKV--DKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNI-NAKASQAGQTALML  189 (276)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTSCCCT--TCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHH
T ss_pred             CHHHHHHHCCCHHHHHHHHHCCCCcC--CCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHH
Confidence            67777777777777777777765 33  345555666666665     44556666666666544 44555556665   


Q ss_pred             --------------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHc-CCCccccccCCCCChHHHHHHHcCCHHHHhh
Q 038923           74 --------------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLN-YPSVSLLEMDDGLTTSLHVAASAGHLGTFAN  138 (140)
Q Consensus        74 --------------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~-~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~  138 (140)
                                    ..+..++.++..|+||||+|+..|+.+++++|++ .|++++.++..|.| |||+|+..|+.+++++
T Consensus       190 A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~T-pL~~A~~~g~~~iv~~  268 (276)
T 4hbd_A          190 AVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGST-ALMVALDAGQSEIASM  268 (276)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCC-HHHHHHHHTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCC-HHHHHHHcCCHHHHHH
Confidence                          2233346677788888888888888888888887 78888888877888 8888888888888877


Q ss_pred             hC
Q 038923          139 LV  140 (140)
Q Consensus       139 Ll  140 (140)
                      |+
T Consensus       269 Ll  270 (276)
T 4hbd_A          269 LY  270 (276)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=2e-28  Score=153.71  Aligned_cols=135  Identities=22%  Similarity=0.216  Sum_probs=119.1

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhch-HHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC-------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDE-AIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP-------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~-~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~-------   73 (140)
                      .++|+.|+..|+.+.++.|+..++ .+  +..+..|.||||+|+..|+.+++++|++.|++ ++..+..|.||       
T Consensus         6 ~~~L~~A~~~g~~~~v~~ll~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            6 VGALLEAANQRDTKKVKEILQDTTYQV--DEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             TTHHHHHHHTTCHHHHHHHHTCTTCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred             ccHHHHHHHhccHHHHHHHHHcCCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHc
Confidence            478999999999999999999876 44  56788999999999999999999999999998 67888899999       


Q ss_pred             -----------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCC-CccccccCCCCChHHHHHHHcCC-----HHHH
Q 038923           74 -----------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYP-SVSLLEMDDGLTTSLHVAASAGH-----LGTF  136 (140)
Q Consensus        74 -----------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~-~~~~~~~~~~~t~~l~~A~~~g~-----~~~~  136 (140)
                                 .....++..+..|.||||+|+..|+.+++++|++.| ++++..+..|.| |||+|+..++     .+++
T Consensus        83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~~~v  161 (201)
T 3hra_A           83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYT-ALIEAVGLREGNQLYQDIV  161 (201)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCC-HHHHHHHSSCCSHHHHHHH
T ss_pred             CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCC-HHHHHHHhccchhhHHHHH
Confidence                       122245677788999999999999999999999888 899999999999 9999999988     8999


Q ss_pred             hhhC
Q 038923          137 ANLV  140 (140)
Q Consensus       137 ~~Ll  140 (140)
                      ++|+
T Consensus       162 ~~Ll  165 (201)
T 3hra_A          162 KLLM  165 (201)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8874

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.96  E-value=3e-29  Score=161.18  Aligned_cols=134  Identities=18%  Similarity=0.052  Sum_probs=85.1

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcc-----cCCCCCCCCCC----
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEM-----LAAPNDKFETP----   73 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~-----~~~~~~~~~~~----   73 (140)
                      ||||.|+..|+.++++.|++.+.++  +..+..|.||||+|+..|+.+++++|++.+.+.     ....+..|.||    
T Consensus        47 t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A  124 (236)
T 1ikn_D           47 TPLHLAVITNQPEIAEALLGAGCDP--ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA  124 (236)
T ss_dssp             CHHHHHHHTTCHHHHHCCCSCCCCS--CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHH
Confidence            5677777777777777777666555  455666777777777777777777777766431     34455555665    


Q ss_pred             -------------Cchhhhhcccc-CCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923           74 -------------TDSWVVHMMNR-NKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus        74 -------------~~~~~~~~~~~-~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                                   ..+..++..+. .|.||||+|+..|+.+++++|++.|++++..+..|.| |||+|+..|+.+++++|
T Consensus       125 ~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t-pl~~A~~~~~~~~~~~L  203 (236)
T 1ikn_D          125 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS-PYQLTWGRPSTRIQQQL  203 (236)
T ss_dssp             HHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCC-GGGGCTTSSCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCC-HHHHHHccCchHHHHHH
Confidence                         12222344454 6666666666666666666666666666666666666 66666666666666665

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.96  E-value=2.3e-28  Score=161.27  Aligned_cols=132  Identities=19%  Similarity=0.201  Sum_probs=90.0

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC---------
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP---------   73 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~---------   73 (140)
                      ||||.|+..|+.++++.|++.+.++  +..+..|.||||+|+..|+.+++++|++.+++ ++..|..|.||         
T Consensus        61 t~L~~Aa~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~~~  137 (285)
T 3d9h_A           61 SPMHEAAIHGHQLSLRNLISQGWAV--NIITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGS  137 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCS--CEECTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCC--CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCH
Confidence            6788888888888888888877665  56677888888888888888888888888877 57777788887         


Q ss_pred             --------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923           74 --------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus        74 --------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                              .....++ .+..|.||||+|+..|+.+++++|++.|++++..+..|.| |||+|+..|+.+++++|
T Consensus       138 ~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t-~L~~A~~~~~~~~v~~L  209 (285)
T 3d9h_A          138 WDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGT-PLYLACENQQRACVKKL  209 (285)
T ss_dssp             HHHHHHHHHTTCCSS-CSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBC-HHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCC-HHHHHHHcCcHHHHHHH
Confidence                    0111111 1233556666666666666666666666666666656666 66666666666666555

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=7.6e-29  Score=159.10  Aligned_cols=118  Identities=14%  Similarity=0.083  Sum_probs=110.6

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhcc
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMM   82 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (140)
                      ++||.|+..|+.++++.|++.+.++  +..+..|.||||+|+..|+.+++++|++.|+++                 +..
T Consensus        23 t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-----------------n~~   83 (229)
T 2vge_A           23 VLLLDAALTGELEVVQQAVKEMNDP--SQPNEEGITALHNAICGANYSIVDFLITAGANV-----------------NSP   83 (229)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHSSCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-----------------TCC
T ss_pred             HHHHHHHHcCCHHHHHHHHhcCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-----------------CCC
Confidence            6899999999999999999998876  678899999999999999999999999999986                 678


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHcCCCcccccc-CCCCChHHHHH--HHcCCHHHHhhhC
Q 038923           83 NRNKESALYVAYERGRHDVVKQLLNYPSVSLLEM-DDGLTTSLHVA--ASAGHLGTFANLV  140 (140)
Q Consensus        83 ~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~-~~~~t~~l~~A--~~~g~~~~~~~Ll  140 (140)
                      +..|+||||+|+..|+.+++++|++.|++++..+ ..|+| |||+|  +..|+.+++++|+
T Consensus        84 d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t-pL~~A~a~~~~~~~~v~~Ll  143 (229)
T 2vge_A           84 DSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGAT-AFEKCDPYREGYADCATYLA  143 (229)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCC-TGGGCCTTSTTHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCC-HHHHHHHHhcChHHHHHHHH
Confidence            8999999999999999999999999999999987 48999 99999  9999999999884

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.96  E-value=7.4e-28  Score=154.77  Aligned_cols=109  Identities=24%  Similarity=0.215  Sum_probs=84.9

Q ss_pred             hcCCCCCCcHHHHHHhhCcHHHHHHHHh----hCCcccCCCCCCCCCC-----------------CchhhhhccccCCCc
Q 038923           30 QTVPGSSNTILHLASRYEHEELALEILK----LCPEMLAAPNDKFETP-----------------TDSWVVHMMNRNKES   88 (140)
Q Consensus        30 ~~~~~~g~t~l~~A~~~g~~~~~~~Ll~----~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~t   88 (140)
                      +..|..|.||||+|+..|+.+++++|++    .+.+ ++..+..|.||                 ..+..++..+..|.|
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t   81 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT   81 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC
Confidence            3567899999999999999999999997    4555 78889999999                 233345566778888


Q ss_pred             HHHHHHHcCCHHHHHHHHcCCC----ccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           89 ALYVAYERGRHDVVKQLLNYPS----VSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        89 ~l~~A~~~~~~~~~~~L~~~~~----~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      |||+|+..|+.+++++|++.+.    +++..+..|.| |||+|+..|+.+++++|+
T Consensus        82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll  136 (241)
T 1k1a_A           82 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT-ALHVAVNTECQETVQLLL  136 (241)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCc-HHHHHHHcCCHHHHHHHH
Confidence            8888888888888888887776    67777777777 888888888888877763

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=1.6e-28  Score=159.73  Aligned_cols=119  Identities=17%  Similarity=0.168  Sum_probs=108.9

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCC--------------CCCCcHHHHHHhhCcHHHHHHHHh---hCCcccC
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVP--------------GSSNTILHLASRYEHEELALEILK---LCPEMLA   64 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~--------------~~g~t~l~~A~~~g~~~~~~~Ll~---~~~~~~~   64 (140)
                      .||||.|+..|+.++++.|++.+.++  +..+              ..|.||||+|+..|+.+++++|++   .|+++  
T Consensus        94 ~t~L~~A~~~g~~~~v~~Ll~~ga~~--~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~--  169 (260)
T 3jxi_A           94 QTALHIAIERRCKHYVELLVEKGADV--HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL--  169 (260)
T ss_dssp             BCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT--
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCc--CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCC--
Confidence            37999999999999999999998777  5555              579999999999999999999999   78876  


Q ss_pred             CCCCCCCCCCchhhhhccccCCCcHHHHHHHcCC---------HHHHHHHHcCCCcc-------ccccCCCCChHHHHHH
Q 038923           65 APNDKFETPTDSWVVHMMNRNKESALYVAYERGR---------HDVVKQLLNYPSVS-------LLEMDDGLTTSLHVAA  128 (140)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~---------~~~~~~L~~~~~~~-------~~~~~~~~t~~l~~A~  128 (140)
                                     +.++..|+||||+|+..++         .+++++|++.|+++       +..+..|.| |||+|+
T Consensus       170 ---------------~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~t-pL~~A~  233 (260)
T 3jxi_A          170 ---------------RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLS-PLMMAA  233 (260)
T ss_dssp             ---------------TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCC-HHHHHH
T ss_pred             ---------------cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCC-HHHHHH
Confidence                           7889999999999999887         79999999999998       678989999 999999


Q ss_pred             HcCCHHHHhhhC
Q 038923          129 SAGHLGTFANLV  140 (140)
Q Consensus       129 ~~g~~~~~~~Ll  140 (140)
                      ..|+.+++++|+
T Consensus       234 ~~g~~~~v~~Ll  245 (260)
T 3jxi_A          234 KTGKIGIFQHII  245 (260)
T ss_dssp             HTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHH
Confidence            999999999985

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=1.5e-28  Score=158.56  Aligned_cols=118  Identities=15%  Similarity=0.110  Sum_probs=105.6

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhcc
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMM   82 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (140)
                      ++||.|+..|+.++++.|++.+.++  +..+..|.||||+|+..|+.+++++|++.|+++                 +.+
T Consensus        39 t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-----------------~~~   99 (239)
T 1ycs_B           39 ALLLDSSLEGEFDLVQRIIYEVDDP--SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-----------------NAA   99 (239)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC--CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-----------------TCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-----------------Ccc
Confidence            6899999999999999999888765  667888999999999999999999999998886                 678


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCC-ChHHHHH--HHcCCHHHHhhhC
Q 038923           83 NRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGL-TTSLHVA--ASAGHLGTFANLV  140 (140)
Q Consensus        83 ~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~-t~~l~~A--~~~g~~~~~~~Ll  140 (140)
                      +..|+||||+|+..|+.+++++|++.|++++..+..|. | |+|+|  +..|+.+++++|+
T Consensus       100 d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t-~l~~a~~~~~g~~~~~~~Ll  159 (239)
T 1ycs_B          100 DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQT-AADKCEEMEEGYTQCSQFLY  159 (239)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCC-HHHHCCSSSTTCCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcc-hHHHHHHhhhccHHHHHHHH
Confidence            88999999999999999999999999999999998777 7 99999  7889999999874

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.95  E-value=1.9e-28  Score=159.15  Aligned_cols=119  Identities=17%  Similarity=0.187  Sum_probs=109.4

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCC-------------CCcHHHHHHhhCcHHHHHHHHh---hCCcccCC
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGS-------------SNTILHLASRYEHEELALEILK---LCPEMLAA   65 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~-------------g~t~l~~A~~~g~~~~~~~Ll~---~~~~~~~~   65 (140)
                      .||||.|+..|+.++++.|++.+.++  +..+..             |.||||+|+..|+.+++++|++   .|+++   
T Consensus        91 ~t~L~~A~~~g~~~~v~~Ll~~ga~~--~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~---  165 (256)
T 2etb_A           91 HSALHIAIEKRSLQCVKLLVENGADV--HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL---  165 (256)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT---
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC--CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc---
Confidence            37999999999999999999998776  555554             9999999999999999999999   88886   


Q ss_pred             CCCCCCCCCchhhhhccccCCCcHHHHHHH--cCCHH-------HHHHHHcCCCcc-------ccccCCCCChHHHHHHH
Q 038923           66 PNDKFETPTDSWVVHMMNRNKESALYVAYE--RGRHD-------VVKQLLNYPSVS-------LLEMDDGLTTSLHVAAS  129 (140)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~--~~~~~-------~~~~L~~~~~~~-------~~~~~~~~t~~l~~A~~  129 (140)
                                    +.++..|+||||+|+.  .++.+       ++++|++.|+++       +.++..|.| |||+|+.
T Consensus       166 --------------n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~t-pL~~A~~  230 (256)
T 2etb_A          166 --------------EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLT-PLKLAAK  230 (256)
T ss_dssp             --------------TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCC-HHHHHHH
T ss_pred             --------------CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCC-HHHHHHH
Confidence                          7889999999999999  78888       999999999999       899999999 9999999


Q ss_pred             cCCHHHHhhhC
Q 038923          130 AGHLGTFANLV  140 (140)
Q Consensus       130 ~g~~~~~~~Ll  140 (140)
                      .|+.+++++|+
T Consensus       231 ~g~~~~v~~Ll  241 (256)
T 2etb_A          231 EGKIEIFRHIL  241 (256)
T ss_dssp             TTCHHHHHHHH
T ss_pred             hCCHHHHHHHH
Confidence            99999999985

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=2e-28  Score=160.99  Aligned_cols=137  Identities=20%  Similarity=0.202  Sum_probs=122.3

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCC--------
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPT--------   74 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~--------   74 (140)
                      +++|.|+..|+++.++.++....+...+..|..|+||||+|+..|+.+++++|++.|+...+..+..|.||.        
T Consensus        78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~  157 (276)
T 4hbd_A           78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL  157 (276)
T ss_dssp             TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence            457889999999999999998877666889999999999999999999999999999855889999999991        


Q ss_pred             --------------chhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           75 --------------DSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        75 --------------~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                                    .+...+..+..|+||||+|+..|+.+++++|++.|++++.++..|+| |||+|+..|+.+++++|+
T Consensus       158 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~T-pLh~A~~~g~~~iv~~Ll  236 (276)
T 4hbd_A          158 KTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGST-ALMCACEHGHKEIAGLLL  236 (276)
T ss_dssp             CSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC-HHHHHHHCCCHHHHHHHH
Confidence                          12234456678999999999999999999999999999999999999 999999999999999884

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=1.3e-28  Score=152.44  Aligned_cols=119  Identities=16%  Similarity=0.134  Sum_probs=112.0

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhc
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHM   81 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   81 (140)
                      .||||.|+..|+.++++.|++.+.++  +..+..|.||||+|+..|+.+++++|++.+.++                 +.
T Consensus        40 ~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----------------~~  100 (179)
T 3f6q_A           40 FSPLHWACREGRSAVVEMLIMRGARI--NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI-----------------NA  100 (179)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-----------------TC
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-----------------Cc
Confidence            37999999999999999999998777  678889999999999999999999999999986                 67


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           82 MNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        82 ~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      .+..|.||||+|+..|+.+++++|++.|++++.++..|.| |+++|+..++.+++++|+
T Consensus       101 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t-pl~~A~~~~~~~~~~~L~  158 (179)
T 3f6q_A          101 VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEM-PVDKAKAPLRELLRERAE  158 (179)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCC-GGGGSCHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCC-cHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999999999 999999999999998873

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.95  E-value=3.1e-29  Score=161.12  Aligned_cols=137  Identities=20%  Similarity=0.176  Sum_probs=118.3

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHH--HhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAI--IKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~--~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~------   73 (140)
                      .||||.|+..|+.++++.|++.+...  ..+..+..|.||||+|+..|+.+++++|++.|++ ++.++..|.||      
T Consensus         9 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~   87 (236)
T 1ikn_D            9 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACE   87 (236)
T ss_dssp             CCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-SCCCCTTCCCHHHHHHH
T ss_pred             CchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHH
Confidence            47999999999999999999986542  2356788899999999999999999999999998 68889999999      


Q ss_pred             --------------Cc---hhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccC-CCCChHHHHHHHcCCHHH
Q 038923           74 --------------TD---SWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMD-DGLTTSLHVAASAGHLGT  135 (140)
Q Consensus        74 --------------~~---~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~-~~~t~~l~~A~~~g~~~~  135 (140)
                                    ..   ...++..+..|.||||+|+..|+.+++++|++.|++++..+. .|.| |||+|+..|+.++
T Consensus        88 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t-pL~~A~~~~~~~~  166 (236)
T 1ikn_D           88 QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT-ALHLAVDLQNPDL  166 (236)
T ss_dssp             HTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCC-HHHHHHHTTCHHH
T ss_pred             cCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCC-HHHHHHHcCCHHH
Confidence                          00   122567778899999999999999999999999999999997 8999 9999999999999


Q ss_pred             HhhhC
Q 038923          136 FANLV  140 (140)
Q Consensus       136 ~~~Ll  140 (140)
                      +++|+
T Consensus       167 v~~Ll  171 (236)
T 1ikn_D          167 VSLLL  171 (236)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99984

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.95  E-value=1.1e-28  Score=157.46  Aligned_cols=119  Identities=18%  Similarity=0.194  Sum_probs=109.2

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhh-CCcccCCCCCCCCCCCchhhhh
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKL-CPEMLAAPNDKFETPTDSWVVH   80 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~   80 (140)
                      .|+||.|+..|+.++++.|++.+.++  +..+..|.||||+|+..|+.+++++|++. +.++                 +
T Consensus        74 ~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-----------------~  134 (222)
T 3ehr_A           74 DNPLHEAAKRGNLSWLRECLDNRVGV--NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-----------------N  134 (222)
T ss_dssp             SCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-----------------C
T ss_pred             ccccccccccCcHHHHHHHHhCCCCc--cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-----------------c
Confidence            47999999999999999999988776  67888999999999999999999999998 7775                 6


Q ss_pred             ccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           81 MMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        81 ~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      ..+..|+||||+|+..|+.+++++|++.|++++.++..|.| ||++|+..|+.++++.|+
T Consensus       135 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t-~l~~A~~~~~~~~l~~l~  193 (222)
T 3ehr_A          135 QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKL-AFDMATNAACASLLKKKQ  193 (222)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCC-HHHHCCSHHHHHHHC---
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCC-HHHHhcchhHHHHHHHHh
Confidence            78899999999999999999999999999999999999999 999999999999998764

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.95  E-value=6.5e-28  Score=163.62  Aligned_cols=124  Identities=16%  Similarity=0.090  Sum_probs=113.0

Q ss_pred             CHHHHHHHHcC--CHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhh
Q 038923            2 DERLFETILKG--DVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVV   79 (140)
Q Consensus         2 ~~~l~~a~~~g--~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~   79 (140)
                      .||||.|+..|  +.++++.|++.+.++  +..+..|.||||+|+..|+.+++++|++.+++.            ....+
T Consensus       139 ~t~L~~A~~~g~~~~~~v~~Ll~~ga~~--~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------------~~~~~  204 (364)
T 3ljn_A          139 QTALHWCVGLGPEYLEMIKILVQLGASP--TAKDKADETPLMRAMEFRNREALDLMMDTVPSK------------SSLRL  204 (364)
T ss_dssp             CCHHHHHHHSCGGGHHHHHHHHHHTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCS------------SSCCT
T ss_pred             CCHHHHHHHcCCchHHHHHHHHHcCCCC--cccCCCCCCHHHHHHHcCCHHHHHHHHhccccc------------ccccc
Confidence            47999999999  999999999998777  678899999999999999999999999999872            11112


Q ss_pred             hccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           80 HMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        80 ~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      +..+..|+||||+|+..|+.+++++|++.|++++..+..|.| |||+|+..|+.+++++|+
T Consensus       205 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t-pL~~A~~~g~~~~v~~Ll  264 (364)
T 3ljn_A          205 DYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTV-PLYLSVRAAMVLLTKELL  264 (364)
T ss_dssp             TCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCC-HHHHHHHTCCHHHHHHHH
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC-HHHHHHHhChHHHHHHHH
Confidence            678899999999999999999999999999999999999999 999999999999999985

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.95  E-value=8.4e-28  Score=149.33  Aligned_cols=109  Identities=19%  Similarity=0.225  Sum_probs=100.0

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhc
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHM   81 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   81 (140)
                      .||||.|++.|+.+.++.|++ +.++  +..+..|.||||+|+..|+.+++++|++.|+++                 +.
T Consensus        45 ~t~L~~A~~~g~~~~v~~Ll~-~~~~--~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-----------------~~  104 (183)
T 3deo_A           45 ETPWWTAARKADEQALSQLLE-DRDV--DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-----------------DH  104 (183)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTT-TSCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-----------------TC
T ss_pred             CCHHHHHHHcCCHHHHHHHHh-cCCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-----------------Cc
Confidence            378999999999999999999 6555  678899999999999999999999999999986                 56


Q ss_pred             cc-cCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcC
Q 038923           82 MN-RNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAG  131 (140)
Q Consensus        82 ~~-~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g  131 (140)
                      .+ ..|+||||+|+..|+.+++++|++.|++++.++..|.| |||+|+..+
T Consensus       105 ~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t-pl~~A~~~~  154 (183)
T 3deo_A          105 RDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLT-ALELAREIL  154 (183)
T ss_dssp             CCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCC-HHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCC-HHHHHHHhc
Confidence            66 88999999999999999999999999999999999999 999998764

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.95  E-value=1.2e-27  Score=153.50  Aligned_cols=134  Identities=18%  Similarity=0.209  Sum_probs=105.7

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC---------
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP---------   73 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~---------   73 (140)
                      +|||.|+..|+.++++.|++.+..+  +..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.+|         
T Consensus        78 t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~a~~~~~  154 (240)
T 3eu9_A           78 TPLHWATRQGHLSMVVQLMKYGADP--SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRTH  154 (240)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCC
T ss_pred             ChhHHHHHcCCHHHHHHHHHcCCCC--cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC-ccccCCCCCcHHHHHHHhCC
Confidence            5677777777777777777766555  45666777777777777777777777777776 56667777777         


Q ss_pred             ---------Cchhhhhcccc-CCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           74 ---------TDSWVVHMMNR-NKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 ---------~~~~~~~~~~~-~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                               ..+..++..+. .|.||||+|+..|+.+++++|++.|++++..+..|.| |+++|+..|+.+++++|+
T Consensus       155 ~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~~~v~~L~  230 (240)
T 3eu9_A          155 SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGES-ALDLAKQRKNVWMINHLQ  230 (240)
T ss_dssp             SSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCB-HHHHHHHTTCHHHHHHHH
T ss_pred             hHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC-HHHHHHHcCcHHHHHHHH
Confidence                     12223444554 7889999999999999999999999999999999999 999999999999999874

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.95  E-value=5.3e-28  Score=158.41  Aligned_cols=119  Identities=18%  Similarity=0.217  Sum_probs=108.5

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCC--------------CCCcHHHHHHhhCcHHHHHHHHh---hCCcccC
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPG--------------SSNTILHLASRYEHEELALEILK---LCPEMLA   64 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~--------------~g~t~l~~A~~~g~~~~~~~Ll~---~~~~~~~   64 (140)
                      .||||.|+..|+.++++.|++.+.++  +..+.              .|.||||+|+..|+.+++++|++   .|.++  
T Consensus       102 ~tpL~~A~~~g~~~~v~~Ll~~ga~~--~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~--  177 (273)
T 2pnn_A          102 QTALHIAIERRNMTLVTLLVENGADV--QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI--  177 (273)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT--TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT--
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCc--CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCc--
Confidence            47999999999999999999998776  44554              79999999999999999999999   88876  


Q ss_pred             CCCCCCCCCCchhhhhccccCCCcHHHHHHHcCC---------HHHHHHHHcCCCccc-------cccCCCCChHHHHHH
Q 038923           65 APNDKFETPTDSWVVHMMNRNKESALYVAYERGR---------HDVVKQLLNYPSVSL-------LEMDDGLTTSLHVAA  128 (140)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~---------~~~~~~L~~~~~~~~-------~~~~~~~t~~l~~A~  128 (140)
                                     +.++..|+||||+|+..|+         .+++++|++.|++++       .++..|.| |||+|+
T Consensus       178 ---------------~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~T-pL~~A~  241 (273)
T 2pnn_A          178 ---------------SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLT-PLALAA  241 (273)
T ss_dssp             ---------------TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCC-HHHHHH
T ss_pred             ---------------eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCC-HHHHHH
Confidence                           7889999999999999998         899999999999986       48889999 999999


Q ss_pred             HcCCHHHHhhhC
Q 038923          129 SAGHLGTFANLV  140 (140)
Q Consensus       129 ~~g~~~~~~~Ll  140 (140)
                      ..|+.+++++|+
T Consensus       242 ~~g~~~iv~~Ll  253 (273)
T 2pnn_A          242 SSGKIGVLAYIL  253 (273)
T ss_dssp             HTTCHHHHHHHH
T ss_pred             HhChHHHHHHHH
Confidence            999999999985

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.95  E-value=2.4e-27  Score=156.03  Aligned_cols=120  Identities=18%  Similarity=0.143  Sum_probs=110.1

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHH----hhcCCCCCCcHHHHHHhh---CcHHHHHHHHhhCCcccCCCCCCCCCCCc
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAII----KQTVPGSSNTILHLASRY---EHEELALEILKLCPEMLAAPNDKFETPTD   75 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~----~~~~~~~g~t~l~~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~   75 (140)
                      ++|+.|+..|+++.++.++..+.+..    .+..+..|.||||+|+..   |+.+++++|++.|+++             
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-------------  198 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-------------  198 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-------------
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-------------
Confidence            47999999999999999999887652    233467899999999999   8999999999999986             


Q ss_pred             hhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           76 SWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        76 ~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                          +.++..|+||||+|+..|+.+++++|++.|++++.++..|.| |||+|+..|+.+++++|+
T Consensus       199 ----n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t-pL~~A~~~~~~~~v~~Ll  258 (278)
T 1dcq_A          199 ----DKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGET-PLDIAKRLKHEHCEELLT  258 (278)
T ss_dssp             ----TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHH
T ss_pred             ----cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCC-HHHHHHHcCCHHHHHHHH
Confidence                788999999999999999999999999999999999999999 999999999999999884

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.95  E-value=8.7e-28  Score=155.43  Aligned_cols=117  Identities=20%  Similarity=0.230  Sum_probs=105.4

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhc
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHM   81 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   81 (140)
                      .||||.|++.|+.++++.|++ +.++  +..+..|.||||+|+..|+.+++++|++.|+++                 +.
T Consensus        46 ~t~L~~A~~~g~~~~v~~Ll~-~~~~--~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-----------------~~  105 (244)
T 3ui2_A           46 ETPWWTAARKADEQALSQLLE-DRDV--DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-----------------DH  105 (244)
T ss_dssp             HHHHHHHHTTTCHHHHHHTTT-TCCT--TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-----------------TC
T ss_pred             CCHHHHHHHcCCHHHHHHHHc-CCCC--CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-----------------Cc
Confidence            379999999999999999999 6555  668889999999999999999999999999986                 56


Q ss_pred             cc-cCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHH----------------HcCCHHHHhhh
Q 038923           82 MN-RNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAA----------------SAGHLGTFANL  139 (140)
Q Consensus        82 ~~-~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~----------------~~g~~~~~~~L  139 (140)
                      .+ ..|+||||+|+..|+.+++++|++.|++++.++..|.| |||+|+                ..|+.+++++|
T Consensus       106 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t-~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L  179 (244)
T 3ui2_A          106 RDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLT-ALELAREILKTTPKGNPMQFGRRIGLEKVINVL  179 (244)
T ss_dssp             CCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc-HHHHHHHHHhccCCCCHHHHHHHcChHHHHHHH
Confidence            66 78999999999999999999999999999999999999 988887                55777777766

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.95  E-value=2.4e-27  Score=156.39  Aligned_cols=133  Identities=17%  Similarity=0.120  Sum_probs=116.9

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      .||||.|+..|+.++++.|++.+.++  +..+..|.||||+|+..|+.+++++|++.+.++ +. +..|.||        
T Consensus        93 ~t~L~~A~~~g~~~~v~~Ll~~ga~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~-~~~g~t~L~~A~~~g  168 (285)
T 3d9h_A           93 VSPLHEACLGGHLSCVKILLKHGAQV--NGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-QP-ESDLASPIHEAARRG  168 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCS--SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-SC-SCTTSCHHHHHHHHT
T ss_pred             CCHHHHHHHCCcHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-CC-CCCCCCHHHHHHHcC
Confidence            47999999999999999999998776  678889999999999999999999999999874 32 3458888        


Q ss_pred             ---------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           74 ---------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 ---------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                               ..+..++..+..|.||||+|+..|+.+++++|++.|++++. +..|.| |||+|+..|+.+++++|+
T Consensus       169 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t-~L~~A~~~~~~~~v~~Ll  242 (285)
T 3d9h_A          169 HVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDS-PLHAVVRTASEELACLLM  242 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBC-HHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCC-HHHHHHHcCCHHHHHHHH
Confidence                     23344677888999999999999999999999999999985 668999 999999999999999884

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.95  E-value=1.7e-27  Score=164.86  Aligned_cols=132  Identities=24%  Similarity=0.185  Sum_probs=61.3

Q ss_pred             HHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC----------
Q 038923            4 RLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP----------   73 (140)
Q Consensus         4 ~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~----------   73 (140)
                      |||.|+..|+.++++.|++.+...  +..+..|.||||+|+..|+.+++++|++.+++ .+..+..|.||          
T Consensus       215 ~L~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~  291 (437)
T 1n11_A          215 PLHIAAKQNQVEVARSLLQYGGSA--NAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHV  291 (437)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCH
Confidence            444444444444444444443332  23334444444444444444444444444444 33444444444          


Q ss_pred             -------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923           74 -------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus        74 -------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                             ..+..++..+..|.||||+|+..|+.+++++|++.|++++.++..|.| |||+|+..|+.+++++|
T Consensus       292 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t-~L~~A~~~g~~~iv~~L  363 (437)
T 1n11_A          292 PVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYS-PLHQAAQQGHTDIVTLL  363 (437)
T ss_dssp             HHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCC-HHHHHHHCChHHHHHHH
Confidence                   111223344444555555555555555555555555555555544555 55555555555555444

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.95  E-value=2.6e-28  Score=159.95  Aligned_cols=118  Identities=19%  Similarity=0.089  Sum_probs=107.8

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhc
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHM   81 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   81 (140)
                      .+|++.|+..++.++++.|++.+.++  +..+..|.||||+|+..|+.+++++|++.|+++                 +.
T Consensus       120 ~t~l~~a~~~~~~~~~~~Ll~~g~~~--n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadv-----------------n~  180 (269)
T 4b93_B          120 AVPLHLACQQGHFQVVKCLLDSNAKP--NKKDLSGNTPLIYACSGGHHELVALLLQHGASI-----------------NA  180 (269)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCS--CCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCT-----------------TC
T ss_pred             CCccccccccChHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC-----------------Cc
Confidence            47899999999999999999998877  678899999999999999999999999999986                 78


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCC-HHHHhhh
Q 038923           82 MNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGH-LGTFANL  139 (140)
Q Consensus        82 ~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~-~~~~~~L  139 (140)
                      .+..|+||||+|+..|+.+++++|++.|++++.++..|+| |||+|+.+++ .+++++|
T Consensus       181 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~T-pL~~A~~~~~i~~lL~~l  238 (269)
T 4b93_B          181 SNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRT-AVDCAEQNSKIMELLQVV  238 (269)
T ss_dssp             BCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCC-SGGGSCTTCHHHHHTTC-
T ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCC-HHHHHHhCCcHHHHHHHH
Confidence            8999999999999999999999999999999999999999 9999998876 3455443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.95  E-value=1.8e-27  Score=157.10  Aligned_cols=132  Identities=16%  Similarity=0.198  Sum_probs=102.8

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      .||||.|+..|+.++++.|++.+.++  +..  +|.||||+|+..|+.+++++|++.|++ ++.++..|.||        
T Consensus        32 ~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g  106 (285)
T 3kea_A           32 HSASYYAIADNNVRLVCTLLNAGALK--NLL--ENEFPLHQAATLEDTKIVKILLFSGLD-DSQFDDKGNTALYYAVDSG  106 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTGGG--SCC--TTCCHHHHHTTSSSCHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCC--CCC--CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCcHHHHHHHcC
Confidence            47999999999999999999998776  333  589999999999999999999999998 56677777777        


Q ss_pred             ---------CchhhhhccccCC-CcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           74 ---------TDSWVVHMMNRNK-ESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 ---------~~~~~~~~~~~~~-~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                               ..+..++..+..| .||||+|+..|+.+++++|++.|++..... .|.| |||+|+..|+.+++++|+
T Consensus       107 ~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t-~L~~A~~~g~~~~v~~Ll  181 (285)
T 3kea_A          107 NMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLA-ILLS-CIHITIKNGHVDMMILLL  181 (285)
T ss_dssp             CHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCS-THHH-HHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccc-CCcc-HHHHHHHcChHHHHHHHH
Confidence                     2334456666667 578888887778788888777776652221 5666 888888888877777763

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.95  E-value=6.3e-27  Score=153.34  Aligned_cols=135  Identities=20%  Similarity=0.177  Sum_probs=113.7

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcC-CCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC-------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTV-PGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP-------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~-~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~-------   73 (140)
                      .++|+.|++.|+.+.++.|++.++++  +.. +..|.||||+|+..|+.+++++|++.|.+ +...+..|.||       
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~   82 (285)
T 1wdy_A            6 NHLLIKAVQNEDVDLVQQLLEGGANV--NFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCc--ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHc
Confidence            37899999999999999999998766  333 67899999999999999999999999988 67778888888       


Q ss_pred             ----------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccc----------cCCCCChHHHHHHHcCCH
Q 038923           74 ----------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLE----------MDDGLTTSLHVAASAGHL  133 (140)
Q Consensus        74 ----------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~----------~~~~~t~~l~~A~~~g~~  133 (140)
                                ..+..++..+..|.||||+|+..|+.+++++|++.|++++..          +..|.| |||+|+..|+.
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~  161 (285)
T 1wdy_A           83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT-ALMDAAEKGHV  161 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCC-HHHHHHHHTCH
T ss_pred             CCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCc-HHHHHHHcCCH
Confidence                      223345667788889999999999999999999888888776          566888 99999999999


Q ss_pred             HHHhhhC
Q 038923          134 GTFANLV  140 (140)
Q Consensus       134 ~~~~~Ll  140 (140)
                      +++++|+
T Consensus       162 ~~v~~Ll  168 (285)
T 1wdy_A          162 EVLKILL  168 (285)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9888774

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=6.5e-28  Score=150.34  Aligned_cols=132  Identities=11%  Similarity=0.084  Sum_probs=100.6

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcH----HHHHHHHhhCCcccCCCCCCCCCC-----
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHE----ELALEILKLCPEMLAAPNDKFETP-----   73 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~----~~~~~Ll~~~~~~~~~~~~~~~~~-----   73 (140)
                      ++|+.|++.|+.+.++.++..+...   ..+..|+||||+|+..|+.    +++++|++.|++ ++.+|..|.||     
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~~~~---~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKGYED---KESVLKSNILYDVLRNNNDEARYKISMFLINKGAD-IKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHSSSC---HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-SSCCCTTCCCTHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCccc---ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-CCCCCCCCCcHHHHHH
Confidence            4577777777777777777654322   1124577777777777753    477777777776 56677777777     


Q ss_pred             ------------------CchhhhhccccCCC-cHHHHHHHcC-----CHHHHHHHHc-CCCccccccCCCCChHHHHHH
Q 038923           74 ------------------TDSWVVHMMNRNKE-SALYVAYERG-----RHDVVKQLLN-YPSVSLLEMDDGLTTSLHVAA  128 (140)
Q Consensus        74 ------------------~~~~~~~~~~~~~~-t~l~~A~~~~-----~~~~~~~L~~-~~~~~~~~~~~~~t~~l~~A~  128 (140)
                                        ..+..++.+|..|. ||||+|+..+     ..+++++|++ .|++++.++..|.| |||+|+
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~T-pL~~A~  162 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLT-ALEFVK  162 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCC-HHHHHH
T ss_pred             HcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCC-HHHHHH
Confidence                              12334578899999 9999999944     4569999999 99999999999999 999999


Q ss_pred             HcCCHHHHhhh
Q 038923          129 SAGHLGTFANL  139 (140)
Q Consensus       129 ~~g~~~~~~~L  139 (140)
                      ..|+.+++++|
T Consensus       163 ~~~~~~~v~~L  173 (186)
T 3t8k_A          163 RCQKPIALKMM  173 (186)
T ss_dssp             TTTCHHHHHHH
T ss_pred             HcCCHHHHHHH
Confidence            99999999987

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.95  E-value=2.4e-27  Score=160.83  Aligned_cols=132  Identities=14%  Similarity=0.098  Sum_probs=110.1

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC---------
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP---------   73 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~---------   73 (140)
                      |+||.|+..|+.+++++|++.+.++  +..+..|.||||+|+..|+.+++++|++.+++.   .+.+|.||         
T Consensus        22 t~L~~Aa~~g~~~~v~~Ll~~g~~~--~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L~~A~~~g~   96 (364)
T 3ljn_A           22 EKIHVAARKGQTDEVRRLIETGVSP--TIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIHLAVMANK   96 (364)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHHHHHHHTTC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCc--cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHHHHHHHcCC
Confidence            6899999999999999999998776  678889999999999999999999999999853   23467777         


Q ss_pred             --------Cc----hhhhh-----------------ccccCCCcHHHHHHHcC--CHHHHHHHHcCCCccccccCCCCCh
Q 038923           74 --------TD----SWVVH-----------------MMNRNKESALYVAYERG--RHDVVKQLLNYPSVSLLEMDDGLTT  122 (140)
Q Consensus        74 --------~~----~~~~~-----------------~~~~~~~t~l~~A~~~~--~~~~~~~L~~~~~~~~~~~~~~~t~  122 (140)
                              ..    ....+                 ..+..|.||||+|+..|  +.+++++|++.|++++..+..|.| 
T Consensus        97 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t-  175 (364)
T 3ljn_A           97 TDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADET-  175 (364)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCC-
T ss_pred             HHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCC-
Confidence                    00    11112                 26778889999999998  889999999889888888888888 


Q ss_pred             HHHHHHHcCCHHHHhhhC
Q 038923          123 SLHVAASAGHLGTFANLV  140 (140)
Q Consensus       123 ~l~~A~~~g~~~~~~~Ll  140 (140)
                      |||+|+..|+.+++++|+
T Consensus       176 ~L~~A~~~g~~~~v~~Ll  193 (364)
T 3ljn_A          176 PLMRAMEFRNREALDLMM  193 (364)
T ss_dssp             HHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHH
Confidence            999999999998888874

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.95  E-value=2.8e-28  Score=160.88  Aligned_cols=133  Identities=14%  Similarity=0.046  Sum_probs=116.7

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCC-CCC-------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKF-ETP-------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~-~~~-------   73 (140)
                      .||||.|+..|+.++++.|++.+.++  +..+..|.||||+|+..|+.+++++|++.|++ ++..+..| .||       
T Consensus        63 ~t~L~~A~~~g~~~~v~~Ll~~ga~~--~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~  139 (285)
T 3kea_A           63 EFPLHQAATLEDTKIVKILLFSGLDD--SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVML  139 (285)
T ss_dssp             CCHHHHHTTSSSCHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCC--CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHc
Confidence            47999999999999999999998876  66788999999999999999999999999988 67888888 688       


Q ss_pred             ----------Cchhhhhcccc-CCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChH-HHHHHHcCCHHHHhhhC
Q 038923           74 ----------TDSWVVHMMNR-NKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTS-LHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 ----------~~~~~~~~~~~-~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~-l~~A~~~g~~~~~~~Ll  140 (140)
                                ..+.  ...+. .|.||||+|+..|+.+++++|++.|++++.++..|+| | ||+|+..|+.+++++|+
T Consensus       140 ~~~~~v~~Ll~~g~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t-~~L~~A~~~~~~~~v~~Ll  215 (285)
T 3kea_A          140 NDVSIVSYFLSEIP--STFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFI-PDIKLAIDNKDIEMLQALF  215 (285)
T ss_dssp             TCHHHHHHHHTTSC--TTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCC-TTHHHHHHHTCHHHHHHHT
T ss_pred             CCHHHHHHHHhCCC--ccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCC-hHHHHHHHcCCHHHHHHHH
Confidence                      1111  11222 7889999999999999999999999999999999999 7 99999999999999986

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.95  E-value=7e-27  Score=161.79  Aligned_cols=134  Identities=22%  Similarity=0.138  Sum_probs=122.3

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      .||||.|+..|+.++++.|++.+.+.  +..+..|.||||+|+..|+.+++++|++++.+ ++..+..|.||        
T Consensus       246 ~t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g  322 (437)
T 1n11_A          246 VTPLHLAAQEGHAEMVALLLSKQANG--NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYG  322 (437)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCT--TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSS
T ss_pred             CCHHHHHHHCCCHHHHHHHHhcCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc-CCCCCCCCCCHHHHHHHcC
Confidence            37899999999999999999988776  67788999999999999999999999999988 67888999999        


Q ss_pred             ---------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923           74 ---------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus        74 ---------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                               ..+..++.++..|+||||+|+..|+.+++++|++.|++++.++..|.| |+++|+..|+.+++++|
T Consensus       323 ~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t-~l~~A~~~g~~~~~~~l  396 (437)
T 1n11_A          323 NIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTT-PLAIAKRLGYISVTDVL  396 (437)
T ss_dssp             CSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCC-HHHHHHHTTCHHHHHHH
T ss_pred             cHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCC-HHHHHHHcCcHHHHHHH
Confidence                     234556788899999999999999999999999999999999999999 99999999999998876

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.95  E-value=4.8e-27  Score=156.14  Aligned_cols=118  Identities=20%  Similarity=0.187  Sum_probs=109.5

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhc------CCCCCCcHHHHHHhh---CcHHHHHHHHhhCCcccCCCCCCCCCC
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQT------VPGSSNTILHLASRY---EHEELALEILKLCPEMLAAPNDKFETP   73 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~------~~~~g~t~l~~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~~~~~   73 (140)
                      ++|+.|+..|+++.++.|+..+.++  +.      .+..|.||||+|+..   |+.+++++|++.|+++           
T Consensus       153 ~~L~~A~~~g~~~~v~~ll~~g~d~--~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-----------  219 (301)
T 2b0o_E          153 QRLWTAICNRDLLSVLEAFANGQDF--GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-----------  219 (301)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT--TSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-----------
T ss_pred             HHHhhhhhccCHHHHHHHHhcCCcc--cccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-----------
Confidence            5699999999999999999988776  33      478899999999997   8999999999999986           


Q ss_pred             CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           74 TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 ~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                            +.++..|+||||+|+..|+.+++++|++.|++++.++..|.| |||+|+..|+.+++++|+
T Consensus       220 ------n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~T-pL~~A~~~~~~~iv~~Ll  279 (301)
T 2b0o_E          220 ------DAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGET-ALDIARKKHHKECEELLE  279 (301)
T ss_dssp             ------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCC-HHHHHHHHTCHHHHHHHH
T ss_pred             ------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence                  678899999999999999999999999999999999999999 999999999999999884

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.95  E-value=4.3e-27  Score=152.78  Aligned_cols=134  Identities=16%  Similarity=0.071  Sum_probs=107.1

Q ss_pred             CHHHHHHHHc---CCHHHHHHHhhhchHHHhh---------cCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCC
Q 038923            2 DERLFETILK---GDVPNFLNLVHEDEAIIKQ---------TVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDK   69 (140)
Q Consensus         2 ~~~l~~a~~~---g~~~~~~~ll~~~~~~~~~---------~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~   69 (140)
                      .||||.|+..   |+.++++.|++.+......         ..+..|.||||+|+..|+.+++++|++.|+++ +..+..
T Consensus        44 ~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~  122 (256)
T 2etb_A           44 KTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACG  122 (256)
T ss_dssp             BCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCS
T ss_pred             CCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-Cccccc
Confidence            3799999999   9999999999998765210         12367999999999999999999999999984 333222


Q ss_pred             CCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHc---CCCccccccCCCCChHHHHHHH--cCCHH-------HHh
Q 038923           70 FETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLN---YPSVSLLEMDDGLTTSLHVAAS--AGHLG-------TFA  137 (140)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~---~~~~~~~~~~~~~t~~l~~A~~--~g~~~-------~~~  137 (140)
                      +..+..   ....+..|.||||+|+..|+.+++++|++   .|++++.++..|+| |||+|+.  .++.+       +++
T Consensus       123 ~~~~~~---~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~T-pLh~A~~~~~~~~~~~~~~~~iv~  198 (256)
T 2etb_A          123 RFFQKH---QGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNT-VLHALVMIADNSPENSALVIHMYD  198 (256)
T ss_dssp             GGGSCC---SSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCC-HHHHHHHHCCSCHHHHHHHHHHHH
T ss_pred             cccccc---ccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCC-HHHHHHHcccCCchhhHHHHHHHH
Confidence            111100   01122349999999999999999999999   99999999999999 9999999  88888       888


Q ss_pred             hhC
Q 038923          138 NLV  140 (140)
Q Consensus       138 ~Ll  140 (140)
                      +|+
T Consensus       199 ~Ll  201 (256)
T 2etb_A          199 GLL  201 (256)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            874

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.95  E-value=4.5e-27  Score=165.48  Aligned_cols=118  Identities=20%  Similarity=0.180  Sum_probs=109.7

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcC------CCCCCcHHHHHHh---hCcHHHHHHHHhhCCcccCCCCCCCCCC
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTV------PGSSNTILHLASR---YEHEELALEILKLCPEMLAAPNDKFETP   73 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~------~~~g~t~l~~A~~---~g~~~~~~~Ll~~~~~~~~~~~~~~~~~   73 (140)
                      +.||.|+..|+.+.++.|++.+.++  +..      +..|.||||+||.   .|+.+++++|++.|+++           
T Consensus       134 ~~L~~A~~~g~~~~v~~ll~~g~~~--n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-----------  200 (497)
T 3lvq_E          134 QRLWTAICNRDLLSVLEAFANGQDF--GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-----------  200 (497)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCS--SSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-----------
T ss_pred             HHHHHHHhccCHHHHHHHHhhcccc--cCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-----------
Confidence            4699999999999999999998776  333      7789999999966   99999999999999986           


Q ss_pred             CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           74 TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 ~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                            +.+|..|+||||+|+..|+.+++++|+++|++++.++..|.| |||+|+..|+.+++++|+
T Consensus       201 ------n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t-pl~~A~~~~~~~~~~~Ll  260 (497)
T 3lvq_E          201 ------DAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGET-ALDIARKKHHKECEELLE  260 (497)
T ss_dssp             ------TCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCC-HHHHHHHTTCHHHHHHHH
T ss_pred             ------CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence                  788999999999999999999999999999999999999999 999999999999999884

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.95  E-value=1.1e-26  Score=152.24  Aligned_cols=135  Identities=18%  Similarity=0.104  Sum_probs=116.9

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcC----------CCCCCcHHHHHHhhCcHHHHHHHHhh-CCcccCCCCCCC
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTV----------PGSSNTILHLASRYEHEELALEILKL-CPEMLAAPNDKF   70 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~----------~~~g~t~l~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~~   70 (140)
                      .+|||.|+..|+.+++++|++.+.++  +..          +..|.||||+|+..|+.+++++|++. +.+ ++..+..|
T Consensus       106 ~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~g  182 (285)
T 1wdy_A          106 FTAFMEAAVYGKVKALKFLYKRGANV--NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-VNACDNMG  182 (285)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHTTCCT--TCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC-TTCCCTTS
T ss_pred             CCHHHHHHHhCCHHHHHHHHHhCCCc--ccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCC-CCccCCCC
Confidence            36889999999999999988887665  223          67799999999999999999999998 666 78888999


Q ss_pred             CCC---------------------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHc-CCCccccccCCCCChHHHHHH
Q 038923           71 ETP---------------------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLN-YPSVSLLEMDDGLTTSLHVAA  128 (140)
Q Consensus        71 ~~~---------------------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~-~~~~~~~~~~~~~t~~l~~A~  128 (140)
                      .+|                     ..+..++.++..|.||||+|+..|+.+++++|++ .|++++.++..|.| |||+|+
T Consensus       183 ~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t-~l~~A~  261 (285)
T 1wdy_A          183 RNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKT-ALLLAV  261 (285)
T ss_dssp             CCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCC-HHHHHH
T ss_pred             CCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCc-HHHHHH
Confidence            998                     1223356678889999999999999999999998 89999999999999 999999


Q ss_pred             HcCCHHHHhhhC
Q 038923          129 SAGHLGTFANLV  140 (140)
Q Consensus       129 ~~g~~~~~~~Ll  140 (140)
                      ..|+.+++++|+
T Consensus       262 ~~~~~~i~~~Ll  273 (285)
T 1wdy_A          262 ELKLKKIAELLC  273 (285)
T ss_dssp             HTTCHHHHHHHH
T ss_pred             HcCcHHHHHHHH
Confidence            999999999984

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.94  E-value=1.1e-26  Score=158.40  Aligned_cols=137  Identities=12%  Similarity=0.073  Sum_probs=109.2

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchH-HHhhcCCCCCCcHHHHHHhhC---cHHHHHHHHhhCCcccC-------CCCCCCC
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEA-IIKQTVPGSSNTILHLASRYE---HEELALEILKLCPEMLA-------APNDKFE   71 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~-~~~~~~~~~g~t~l~~A~~~g---~~~~~~~Ll~~~~~~~~-------~~~~~~~   71 (140)
                      ||||.|+..|+.++++.|++.+.. ...+..+..|.||||+|+..+   +.+++++|++.+.++..       ..+..|.
T Consensus       201 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~  280 (373)
T 2fo1_E          201 SALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGR  280 (373)
T ss_dssp             CHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCC
T ss_pred             CHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCC
Confidence            577777777777777777776521 122556778888888888887   78888888888887432       3566888


Q ss_pred             CC-----------------Cc-hhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCH
Q 038923           72 TP-----------------TD-SWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL  133 (140)
Q Consensus        72 ~~-----------------~~-~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~  133 (140)
                      ||                 .. +..++.++..|.||||+|+..|+.+++++|++.|++++.++..|.| |||+|+..|+.
T Consensus       281 t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t-~l~~A~~~g~~  359 (373)
T 2fo1_E          281 TALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHT-ARQLAQANNHH  359 (373)
T ss_dssp             CTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCC-HHHHHHHTTCH
T ss_pred             CHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCC-HHHHHHHcCCH
Confidence            88                 12 2556778889999999999999999999999999999999999999 99999999999


Q ss_pred             HHHhhhC
Q 038923          134 GTFANLV  140 (140)
Q Consensus       134 ~~~~~Ll  140 (140)
                      +++++|+
T Consensus       360 ~iv~~Ll  366 (373)
T 2fo1_E          360 NIVDIFD  366 (373)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999874

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.94  E-value=8.9e-27  Score=158.37  Aligned_cols=118  Identities=14%  Similarity=0.067  Sum_probs=110.7

Q ss_pred             HHHHHHHHc-CCHHHHHHHhhhchHHHhhcCC--CCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhh
Q 038923            3 ERLFETILK-GDVPNFLNLVHEDEAIIKQTVP--GSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVV   79 (140)
Q Consensus         3 ~~l~~a~~~-g~~~~~~~ll~~~~~~~~~~~~--~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~   79 (140)
                      ++||.|+.. |+++.++.|++.+.++  +..+  ..|.||||+|+..|+.+++++|+++|+++                 
T Consensus       201 t~L~~Aa~~~g~~~~v~~LL~~Gadv--n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-----------------  261 (368)
T 3jue_A          201 ALLFRASGHPPSLPTMADALAHGADV--NWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-----------------  261 (368)
T ss_dssp             HHHHHHTSSSCCHHHHHHHHHTTCCT--TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-----------------
T ss_pred             cHHHHHHHccCCHHHHHHHHHcCCCC--CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-----------------
Confidence            589999999 9999999999998877  4555  78999999999999999999999999986                 


Q ss_pred             hccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           80 HMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        80 ~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      +..+..|+||||+|+..|+.+++++|+++|++++..+..|.| |||+|+..|+.+++++|+
T Consensus       262 n~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~T-pL~~A~~~g~~~iv~lLl  321 (368)
T 3jue_A          262 NQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRD-PLTIAMETANADIVTLLR  321 (368)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCC-HHHHHHHCCCHHHHHHHH
Confidence            788999999999999999999999999999999999999999 999999999999999874

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.94  E-value=1.6e-26  Score=151.41  Aligned_cols=135  Identities=16%  Similarity=0.081  Sum_probs=107.0

Q ss_pred             CHHHHHHHHc---CCHHHHHHHhhhchHHH-----hhc----CCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCC
Q 038923            2 DERLFETILK---GDVPNFLNLVHEDEAII-----KQT----VPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDK   69 (140)
Q Consensus         2 ~~~l~~a~~~---g~~~~~~~ll~~~~~~~-----~~~----~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~   69 (140)
                      .||||.|+..   |+.++++.|++.+++..     .+.    .+..|.||||+|+..|+.+++++|++.|+++ +..+..
T Consensus        55 ~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~  133 (273)
T 2pnn_A           55 KTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANG  133 (273)
T ss_dssp             CCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCS
T ss_pred             CCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-Cccccc
Confidence            4799999987   99999999999976521     122    4568999999999999999999999999984 222211


Q ss_pred             CCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHc---CCCccccccCCCCChHHHHHHHcCC---------HHHHh
Q 038923           70 FETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLN---YPSVSLLEMDDGLTTSLHVAASAGH---------LGTFA  137 (140)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~---~~~~~~~~~~~~~t~~l~~A~~~g~---------~~~~~  137 (140)
                      +....  ......+..|.||||+|+..|+.+++++|++   .|++++.++..|+| |||+|+..|+         .++++
T Consensus       134 ~~~~~--~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~t-pLh~A~~~~~~~~~~~~~~~~~v~  210 (273)
T 2pnn_A          134 DFFKK--TKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNT-VLHALVEVADNTVDNTKFVTSMYN  210 (273)
T ss_dssp             GGGSS--CSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCC-HHHHHHHHCCSCHHHHHHHHHHHH
T ss_pred             ccccc--ccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCc-HHHHHHHccCcchhHHHHHHHHHH
Confidence            10000  0011223479999999999999999999999   99999999999999 9999999998         78888


Q ss_pred             hhC
Q 038923          138 NLV  140 (140)
Q Consensus       138 ~Ll  140 (140)
                      +|+
T Consensus       211 ~Ll  213 (273)
T 2pnn_A          211 EIL  213 (273)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            774

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.94  E-value=1.8e-26  Score=155.10  Aligned_cols=137  Identities=18%  Similarity=0.105  Sum_probs=114.0

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHh--------hcCCCCCCcHHHHHHhhCcHHHHHHHHhh-CCcccCCCCCCCCC
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIK--------QTVPGSSNTILHLASRYEHEELALEILKL-CPEMLAAPNDKFET   72 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~--------~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~~~~   72 (140)
                      .||++.|+..|+.++++.+++.+..+..        ...+..|.||||+|+..|+.+++++|+++ |++ ++..+..|.+
T Consensus       126 ~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad-~n~~d~~g~t  204 (337)
T 4g8k_A          126 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-VNACDNMGRN  204 (337)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCC-TTCCCTTSCC
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCC-cCccCCCCCc
Confidence            3689999999999999999998765411        22445689999999999999999999975 666 7888888888


Q ss_pred             C---------------------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHc-CCCccccccCCCCChHHHHHHHc
Q 038923           73 P---------------------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLN-YPSVSLLEMDDGLTTSLHVAASA  130 (140)
Q Consensus        73 ~---------------------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~-~~~~~~~~~~~~~t~~l~~A~~~  130 (140)
                      +                     ..+..++.++..|+||||+|+..|+.++++.|+. .|++++.++..|+| |||+|+..
T Consensus       205 ~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~T-pL~~A~~~  283 (337)
T 4g8k_A          205 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKT-ALLLAVEL  283 (337)
T ss_dssp             HHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCB-HHHHHHHT
T ss_pred             HHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCC-HHHHHHHc
Confidence            7                     1233456778889999999999999999999986 47899999999999 99999999


Q ss_pred             CCHHHHhhhC
Q 038923          131 GHLGTFANLV  140 (140)
Q Consensus       131 g~~~~~~~Ll  140 (140)
                      |+.+++++|+
T Consensus       284 g~~~iv~~Ll  293 (337)
T 4g8k_A          284 KLKKIAELLC  293 (337)
T ss_dssp             TCHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            9999999885

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.94  E-value=2e-26  Score=154.96  Aligned_cols=119  Identities=22%  Similarity=0.235  Sum_probs=109.1

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhcc
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMM   82 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (140)
                      ++|+.|++.|+.+.++.++...+.. .+..+..|.||||+|+..|+.+++++|++.|.++                 +..
T Consensus        26 ~~L~~A~~~g~~~~v~~ll~~~~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----------------~~~   87 (351)
T 3utm_A           26 DELLEAARSGNEEKLMALLTPLNVN-CHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-----------------HAK   87 (351)
T ss_dssp             HHHHHHHHHTCHHHHHHHCCTTTTT-CCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-----------------TCC
T ss_pred             hhHHHHHHcCCHHHHHHHHHhcCCC-cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-----------------Ccc
Confidence            6899999999999999999874332 2567889999999999999999999999999986                 678


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           83 NRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        83 ~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      +..|.||||+|+..|+.+++++|++.|++++..+..|.| |||+|+..|+.+++++|+
T Consensus        88 ~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll  144 (351)
T 3utm_A           88 DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFT-PLHEAASKNRVEVCSLLL  144 (351)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHH
T ss_pred             CCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence            889999999999999999999999999999999999999 999999999999999884

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.94  E-value=6.1e-27  Score=152.29  Aligned_cols=135  Identities=15%  Similarity=0.006  Sum_probs=105.6

Q ss_pred             CHHHHHHH---HcCCHHHHHHHhhhchHHH---------hhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCC
Q 038923            2 DERLFETI---LKGDVPNFLNLVHEDEAII---------KQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDK   69 (140)
Q Consensus         2 ~~~l~~a~---~~g~~~~~~~ll~~~~~~~---------~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~   69 (140)
                      .||||.|+   +.|+.++++.|++.+....         .+..+..|.||||+|+..|+.+++++|++.|+++ +..+..
T Consensus        47 ~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~  125 (260)
T 3jxi_A           47 KTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARG  125 (260)
T ss_dssp             CCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEE
T ss_pred             CcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-Cccccc
Confidence            37999999   6799999999999876521         1223348999999999999999999999999985 222211


Q ss_pred             CCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHc---CCCccccccCCCCChHHHHHHHcCC---------HHHHh
Q 038923           70 FETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLN---YPSVSLLEMDDGLTTSLHVAASAGH---------LGTFA  137 (140)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~---~~~~~~~~~~~~~t~~l~~A~~~g~---------~~~~~  137 (140)
                      +...  +......+..|+||||+|+..|+.+++++|++   .|++++.++..|+| |||+|+..|+         .++++
T Consensus       126 ~~~~--~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~T-pLh~A~~~~~~~~~~~~~~~~~v~  202 (260)
T 3jxi_A          126 RFFQ--PKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNT-VLHALVAIADNTRENTKFVTKMYD  202 (260)
T ss_dssp             CCCS--SSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCC-HHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred             cccC--cccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCc-HHHHHHHhccCchhHHHHHHHHHH
Confidence            0000  00001122679999999999999999999999   99999999999999 9999999888         68888


Q ss_pred             hhC
Q 038923          138 NLV  140 (140)
Q Consensus       138 ~Ll  140 (140)
                      +|+
T Consensus       203 ~Ll  205 (260)
T 3jxi_A          203 LLL  205 (260)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            774

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.94  E-value=5.2e-27  Score=155.21  Aligned_cols=117  Identities=16%  Similarity=0.132  Sum_probs=109.9

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhcc
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMM   82 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (140)
                      ++|+.|+..|+.+.++.|++.+.++  +..+..|.||||+|+..|+.+++++|++.|+++                 +..
T Consensus        42 t~l~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-----------------~~~  102 (299)
T 1s70_B           42 AVFLAACSSGDTEEVLRLLERGADI--NYANVDGLTALHQACIDDNVDMVKFLVENGANI-----------------NQP  102 (299)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHCCCT--TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-----------------TCC
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCC--cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-----------------CCC
Confidence            6899999999999999999998776  667889999999999999999999999999986                 678


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923           83 NRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus        83 ~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                      +..|+||||+|+..|+.+++++|++.|++++..+..|.| |||+|+..++.++++.+
T Consensus       103 ~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~~~~~~l  158 (299)
T 1s70_B          103 DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDT-PLDIAEEEAMEELLQNE  158 (299)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHCCSHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCC-HHHHHHhcchHHHHHHH
Confidence            889999999999999999999999999999999999999 99999999999988765

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.94  E-value=1.8e-26  Score=128.66  Aligned_cols=88  Identities=32%  Similarity=0.400  Sum_probs=82.7

Q ss_pred             CCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCcccc
Q 038923           35 SSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLL  114 (140)
Q Consensus        35 ~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~  114 (140)
                      +|+||||+|+..|+.+++++|++.+.++                 +.++..|+||||+|+..|+.+++++|++.|++++.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----------------n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~   63 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-----------------NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA   63 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT-----------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC-----------------cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence            4899999999999999999999999986                 67889999999999999999999999999999999


Q ss_pred             ccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923          115 EMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       115 ~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      ++..|.| |||+|+..|+.+++++|+
T Consensus        64 ~d~~g~t-~l~~A~~~~~~~~~~~Ll   88 (93)
T 1n0q_A           64 KDKNGRT-PLHLAARNGHLEVVKLLL   88 (93)
T ss_dssp             CCTTSCC-HHHHHHHTTCHHHHHHHH
T ss_pred             cCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence            9999999 999999999999999884

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=3.4e-27  Score=152.18  Aligned_cols=118  Identities=19%  Similarity=0.097  Sum_probs=83.4

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhc
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHM   81 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   81 (140)
                      .||||.|++.|+.+.++.|++.+.+.  + .+..|.||||+|+..|+.+++++|++.++++                 +.
T Consensus         6 ~t~L~~a~~~~~~~~~~~ll~~g~~~--~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-----------------~~   65 (239)
T 1ycs_B            6 QVSLPPGKRTNLRKTGSERIAHGMRV--K-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDP-----------------SL   65 (239)
T ss_dssp             ----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-----------------CC
T ss_pred             cccCchhhhhhhHHHHHHHhccCCCc--c-cCchhhHHHHHHHHcCCHHHHHHHHHcCCCC-----------------CC
Confidence            47999999999999999999998877  3 2367899999999999999999999999975                 67


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           82 MNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        82 ~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      .+..|.||||+|+..|+.+++++|++.|++++.++..|+| |||+|+..|+.+++++|+
T Consensus        66 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t-pL~~A~~~~~~~~v~~Ll  123 (239)
T 1ycs_B           66 PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWT-PLHCAASCNNVQVCKFLV  123 (239)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence            8899999999999999999999999999999999999999 999999999999999884

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.94  E-value=8.1e-27  Score=159.00  Aligned_cols=135  Identities=18%  Similarity=0.141  Sum_probs=117.9

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhC---CcccCCCCCCCCCC-----
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLC---PEMLAAPNDKFETP-----   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~---~~~~~~~~~~~~~~-----   73 (140)
                      .||||.|+..|+.++++.|++.+.++  +..+..|.||||+|+..|+.+++++|++.+   .+ ++..+..|.||     
T Consensus       167 ~TpL~~A~~~g~~~iv~~Ll~~ga~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~d~~g~t~L~~A~  243 (373)
T 2fo1_E          167 NTPLMLAVLARRRRLVAYLMKAGADP--TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGD-IEELDRNGMTALMIVA  243 (373)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCS--CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHT-TSCCCTTSCCHHHHHH
T ss_pred             CCHHHHHHHcChHHHHHHHHHCCCCC--cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccC-hhhcCCCCCCHHHHHH
Confidence            47999999999999999999998877  678889999999999999999999999987   34 67888999998     


Q ss_pred             --C---c----------hhhh--------hccccCCCcHHHHHHHcCCHHHHHHHHcCC-CccccccCCCCChHHHHHHH
Q 038923           74 --T---D----------SWVV--------HMMNRNKESALYVAYERGRHDVVKQLLNYP-SVSLLEMDDGLTTSLHVAAS  129 (140)
Q Consensus        74 --~---~----------~~~~--------~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~-~~~~~~~~~~~t~~l~~A~~  129 (140)
                        .   .          +..+        +..+..|.||||+|+..|+.+++++|++.+ ++++..+..|.| |||+|+.
T Consensus       244 ~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~T-pL~~A~~  322 (373)
T 2fo1_E          244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKT-PIMLAAQ  322 (373)
T ss_dssp             HSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCC-HHHHHHH
T ss_pred             HhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCC-HHHHHHH
Confidence              1   0          1111        124568999999999999999999999765 999999999999 9999999


Q ss_pred             cCCHHHHhhhC
Q 038923          130 AGHLGTFANLV  140 (140)
Q Consensus       130 ~g~~~~~~~Ll  140 (140)
                      .|+.+++++|+
T Consensus       323 ~g~~~iv~~Ll  333 (373)
T 2fo1_E          323 EGRIEVVMYLI  333 (373)
T ss_dssp             HTCHHHHHHHH
T ss_pred             cCCHHHHHHHH
Confidence            99999999984

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.93  E-value=5.7e-26  Score=145.60  Aligned_cols=123  Identities=17%  Similarity=0.102  Sum_probs=69.8

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC---------
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP---------   73 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~---------   73 (140)
                      ++|+.|+..|+.+.+++|++.+.++  +..+..|.||||+|+..|+.+++++|++.+.+.....+..|.+|         
T Consensus        11 ~~l~~A~~~g~~~~~~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~   88 (240)
T 3eu9_A           11 WDIVKATQYGIYERCRELVEAGYDV--RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH   88 (240)
T ss_dssp             CCHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTC
T ss_pred             hHHHHHHHcCChHHHHHHHHcCCCc--CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCC
Confidence            4567777777777777777766554  44556677777777777777777777777666444444445555         


Q ss_pred             --------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHH
Q 038923           74 --------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAA  128 (140)
Q Consensus        74 --------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~  128 (140)
                              ..+..++..+..|.||||+|+..|+.+++++|++.|++++..+..|.| |||+|+
T Consensus        89 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t-~l~~a~  150 (240)
T 3eu9_A           89 LSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMT-PLMWAA  150 (240)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHH
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCc-HHHHHH
Confidence                    111222334445555555555555555555555555554444444444 444444

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.93  E-value=3.8e-26  Score=153.30  Aligned_cols=131  Identities=15%  Similarity=0.065  Sum_probs=89.0

Q ss_pred             HHHHHcCCHHHHHHHhhhchHHHhhc-CCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC-------Cc--
Q 038923            6 FETILKGDVPNFLNLVHEDEAIIKQT-VPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP-------TD--   75 (140)
Q Consensus         6 ~~a~~~g~~~~~~~ll~~~~~~~~~~-~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~-------~~--   75 (140)
                      |.|+..+..+.++.|++.+.++  +. .+..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||       ..  
T Consensus       102 ~~a~~~~~~~~~~~l~~~g~dv--n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad-~n~~d~~g~TpLh~A~~~g~~~  178 (327)
T 1sw6_A          102 HVSFDSLLQEVNDAFPNTQLNL--NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNY  178 (327)
T ss_dssp             --CHHHHHHHHHHHCTTSCCCS--CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHSSHHH
T ss_pred             HHHHHhhHHHHHHHHHhcCCCc--ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhcccc
Confidence            4444445555555555554444  33 455556666666666666666666665555 34555555555       00  


Q ss_pred             ------------hhhhhccccCCCcHHHHHHH----cCCHHHHHHHHcCCC-----------------------------
Q 038923           76 ------------SWVVHMMNRNKESALYVAYE----RGRHDVVKQLLNYPS-----------------------------  110 (140)
Q Consensus        76 ------------~~~~~~~~~~~~t~l~~A~~----~~~~~~~~~L~~~~~-----------------------------  110 (140)
                                  ...++.++..|+||||+|+.    .|+.+++++|++.+.                             
T Consensus       179 ~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g  258 (327)
T 1sw6_A          179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER  258 (327)
T ss_dssp             HTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------------
T ss_pred             cHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccC
Confidence                        02247788999999999999    899999999986632                             


Q ss_pred             ----------------ccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923          111 ----------------VSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       111 ----------------~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                                      +++.++..|+| |||+|+..|+.+++++|+
T Consensus       259 ~t~L~~a~~~~~Ll~~~~n~~d~~G~T-pLh~A~~~g~~~~v~~Ll  303 (327)
T 1sw6_A          259 KDSILENLDLKWIIANMLNAQDSNGDT-CLNIAARLGNISIVDALL  303 (327)
T ss_dssp             -CHHHHHCSHHHHHHHTTTCCCTTSCC-HHHHHHHHCCHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence                            47778888999 999999999999999985

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.93  E-value=2.4e-25  Score=136.74  Aligned_cols=111  Identities=19%  Similarity=0.194  Sum_probs=88.1

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      .||||.|+..|+.++++.|++.+.++  +..+..|+||||+|+..|+.+++++|++.|++ ++.+|.+|.||        
T Consensus        38 ~t~l~~a~~~~~~~~~~~ll~~gad~--~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g  114 (169)
T 4gpm_A           38 RTPLHHAAENGHKEVVKLLISKGADV--NAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENG  114 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccch--hhhccCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcC
Confidence            36888888888888888888887776  66778888888888888888888888888887 67788888888        


Q ss_pred             ---------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccc
Q 038923           74 ---------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLE  115 (140)
Q Consensus        74 ---------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~  115 (140)
                               ..+..++.++..|+|||++|+..|+.+++++|++.|++++.-
T Consensus       115 ~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~~  165 (169)
T 4gpm_A          115 HKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEHH  165 (169)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-------
T ss_pred             CHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCCC
Confidence                     234456788999999999999999999999999999998643

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.92  E-value=6.7e-25  Score=122.28  Aligned_cols=91  Identities=23%  Similarity=0.279  Sum_probs=85.2

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhc
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHM   81 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   81 (140)
                      .||||.|+..|+.++++.|++.+.++  +..+..|+||||+|+..|+.+++++|++.|+++                 +.
T Consensus         3 ~t~L~~A~~~~~~~~v~~Ll~~g~~~--n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-----------------~~   63 (93)
T 1n0q_A            3 RTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-----------------NA   63 (93)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-----------------TC
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCC--cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-----------------Cc
Confidence            47999999999999999999998776  678899999999999999999999999999986                 67


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHcCCCc
Q 038923           82 MNRNKESALYVAYERGRHDVVKQLLNYPSV  111 (140)
Q Consensus        82 ~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~  111 (140)
                      ++..|+||||+|+..|+.+++++|++.|++
T Consensus        64 ~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           64 KDKNGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            889999999999999999999999999874

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.92  E-value=2.6e-26  Score=156.52  Aligned_cols=122  Identities=17%  Similarity=0.177  Sum_probs=99.4

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHH-HhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhc
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAI-IKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHM   81 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~-~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   81 (140)
                      ||||.|++.|+.+++++|++.+... .....+..|.||||+|+..|+.+++++|+++|++..            ..  +.
T Consensus        94 T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~------------~~--~i  159 (376)
T 2aja_A           94 VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEI------------MA--MI  159 (376)
T ss_dssp             HHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTH------------HH--HH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCcc------------cc--cc
Confidence            7999999999999999999987521 001234567899999999999999999999997420            00  12


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHcCCCcccc--ccCCCCChHHHHHH-HcCCHHHHhhhC
Q 038923           82 MNRNKESALYVAYERGRHDVVKQLLNYPSVSLL--EMDDGLTTSLHVAA-SAGHLGTFANLV  140 (140)
Q Consensus        82 ~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~--~~~~~~t~~l~~A~-~~g~~~~~~~Ll  140 (140)
                      .+.+ +||||+|+..|+.+++++|++.|++++.  .+..|.| |||+|+ ..|+.+++++|+
T Consensus       160 ~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~T-pL~~Aa~~~G~~eiv~~Ll  219 (376)
T 2aja_A          160 QAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYY-AFRWAAVGRGHHNVINFLL  219 (376)
T ss_dssp             SHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHH-HHHHHHSTTCCHHHHHHHT
T ss_pred             CCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCC-HHHHHHHHCCCHHHHHHHH
Confidence            2223 8999999999999999999999999887  7878899 999999 999999999986

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.92  E-value=7e-25  Score=126.58  Aligned_cols=102  Identities=18%  Similarity=0.217  Sum_probs=87.3

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhc
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHM   81 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   81 (140)
                      .++||.|+..|+.++++.|++.+.++  +..+..|.||||+|+..|+.+++++|++.++++                 +.
T Consensus        10 ~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-----------------~~   70 (115)
T 2l6b_A           10 NTPLHNAAKNGHAEEVKKLLSKGADV--NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-----------------NA   70 (115)
T ss_dssp             CCHHHHHHHHTCHHHHHHHTTTTCCS--SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-----------------TC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-----------------cc
Confidence            46899999999999999999887765  567788999999999999999999999988875                 67


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChH
Q 038923           82 MNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTS  123 (140)
Q Consensus        82 ~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~  123 (140)
                      ++..|.||||+|+..|+.+++++|++.|++++..+..+.+ |
T Consensus        71 ~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~-~  111 (115)
T 2l6b_A           71 RSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSH-H  111 (115)
T ss_dssp             CCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccc-c
Confidence            7888899999999999999999999999999988888877 5

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.91  E-value=1.8e-24  Score=135.07  Aligned_cols=111  Identities=16%  Similarity=0.073  Sum_probs=100.2

Q ss_pred             HhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC-----------------CchhhhhccccCCCcHH
Q 038923           28 IKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP-----------------TDSWVVHMMNRNKESAL   90 (140)
Q Consensus        28 ~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~t~l   90 (140)
                      ..+..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||                 ..+..++..+..|.|||
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L  105 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPL  105 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHH
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc-cccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence            3466889999999999999999999999999987 67888899999                 23344677888999999


Q ss_pred             HHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           91 YVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        91 ~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      |+|+..|+.+++++|++.|++++..+..|.| |||+|+..|+.+++++|+
T Consensus       106 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll  154 (192)
T 2rfm_A          106 MWSIIFGYSEMSYFLLEHGANVNDRNLEGET-PLIVASKYGRSEIVKKLL  154 (192)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSSCCCTTCCC-HHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999 999999999999999884

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=8.4e-26  Score=140.77  Aligned_cols=103  Identities=9%  Similarity=-0.024  Sum_probs=69.4

Q ss_pred             CCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC---------------------CchhhhhccccCCCcHHHHH
Q 038923           35 SSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP---------------------TDSWVVHMMNRNKESALYVA   93 (140)
Q Consensus        35 ~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~t~l~~A   93 (140)
                      +++++|+.|++.|+.+.++.++..+...  ..+..|.||                     ..++.++.++..|+||||+|
T Consensus         5 ~~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a   82 (186)
T 3t8k_A            5 SEYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPL   82 (186)
T ss_dssp             HHCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHH
T ss_pred             ccccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            3568999999999999999999877542  112456666                     12334566667777777777


Q ss_pred             HHcCC------HHHHHHHHcCCCccccccCCCCChHHHHHHHcCC-----HHHHhhh
Q 038923           94 YERGR------HDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGH-----LGTFANL  139 (140)
Q Consensus        94 ~~~~~------~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~-----~~~~~~L  139 (140)
                      +..|+      .+++++|++.|++++.++..|.|||||+|+..+.     .+++++|
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~L  139 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLI  139 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHH
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHH
Confidence            77665      4567777777777777777777227777776433     3455554

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.91  E-value=3.2e-25  Score=148.80  Aligned_cols=127  Identities=15%  Similarity=0.129  Sum_probs=107.7

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCc---HHHHHHHHhhCCcccCCCCCCCCCCCchh-
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEH---EELALEILKLCPEMLAAPNDKFETPTDSW-   77 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~---~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~-   77 (140)
                      .||||.|+..|+.++++.|++.+.++  +..+..|+||||+|+..|+   .++++.|++.+...++.+|..|.||...+ 
T Consensus       132 ~TpLh~Aa~~g~~~~v~~Ll~~Gad~--n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~  209 (327)
T 1sw6_A          132 NTPLHWLTSIANLELVKHLVKHGSNR--LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHII  209 (327)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT--TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHH
Confidence            47999999999999999999998877  6788889999999999888   67777777776434677888888881100 


Q ss_pred             -----------------------------------------------------------------hhhccccCCCcHHHH
Q 038923           78 -----------------------------------------------------------------VVHMMNRNKESALYV   92 (140)
Q Consensus        78 -----------------------------------------------------------------~~~~~~~~~~t~l~~   92 (140)
                                                                                       .++.++..|+||||+
T Consensus       210 ~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~  289 (327)
T 1sw6_A          210 ITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNI  289 (327)
T ss_dssp             HHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHH
T ss_pred             HHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHH
Confidence                                                                             367788999999999


Q ss_pred             HHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcC
Q 038923           93 AYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAG  131 (140)
Q Consensus        93 A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g  131 (140)
                      |+..|+.+++++|+++|++++.++..|+| |||+|++.|
T Consensus       290 A~~~g~~~~v~~Ll~~Gad~~~~d~~G~T-pL~~A~~~g  327 (327)
T 1sw6_A          290 AARLGNISIVDALLDYGADPFIANKSGLR-PVDFGAGLE  327 (327)
T ss_dssp             HHHHCCHHHHHHHHHTTCCTTCCCTTSCC-GGGGTCC--
T ss_pred             HHHcCCHHHHHHHHHcCCCCcccCCCCCC-HHHHHHhcC
Confidence            99999999999999999999999999999 999998765

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.91  E-value=5.7e-24  Score=126.23  Aligned_cols=92  Identities=22%  Similarity=0.176  Sum_probs=86.8

Q ss_pred             cCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCC
Q 038923           31 TVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPS  110 (140)
Q Consensus        31 ~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~  110 (140)
                      ..+..|.||||+|+..|+.+++++|++.+.++                 +..+..|+||||+|+..|+.+++++|++.|+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-----------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~   67 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-----------------NVKDHAGWTPLHEACNHGHLKVVELLLQHKA   67 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-----------------CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-----------------CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            46789999999999999999999999999886                 6788899999999999999999999999999


Q ss_pred             ccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923          111 VSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       111 ~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      +++.++..|.| |||+|+..|+.+++++|+
T Consensus        68 ~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll   96 (137)
T 3c5r_A           68 LVNTTGYQNDS-PLHDAAKNGHVDIVKLLL   96 (137)
T ss_dssp             CTTCCCGGGCC-HHHHHHHTTCHHHHHHHH
T ss_pred             cccCcCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence            99999999999 999999999999999884

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.91  E-value=5.7e-24  Score=121.99  Aligned_cols=91  Identities=18%  Similarity=0.167  Sum_probs=84.4

Q ss_pred             cCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCC
Q 038923           31 TVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPS  110 (140)
Q Consensus        31 ~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~  110 (140)
                      ..+.+|.|+||+|+..|+.+++++|++.+.++                 +.++..|.||||+|+..|+.+++++|++.|+
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-----------------~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga   81 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMANGADV-----------------AAKDKNGSTPLHLAARNGHLEVVKLLLEAGA   81 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-----------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-----------------CccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            35678999999999999999999999999886                 6788999999999999999999999999999


Q ss_pred             ccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923          111 VSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus       111 ~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                      +++.++..|.| |||+|+..|+.+++++|
T Consensus        82 ~~~~~d~~g~t-pl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           82 DVXAQDKFGKT-AFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CTTCCCTTSCC-HHHHHHHHTCHHHHHHH
T ss_pred             CccccccCCCc-HHHHHHHcCCHHHHHHh
Confidence            99999999999 99999999999999987

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.90  E-value=4.7e-24  Score=123.07  Aligned_cols=92  Identities=25%  Similarity=0.262  Sum_probs=86.9

Q ss_pred             cCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCC
Q 038923           31 TVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPS  110 (140)
Q Consensus        31 ~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~  110 (140)
                      ..|..|.||||+|+..|+.+++++|++.+.++                 +..+..|+||||+|+..|+.+++++|++.|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-----------------~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~   66 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-----------------NARSKDGNTPLHLAAKNGHAEIVKLLLAKGA   66 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-----------------SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-----------------CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            46789999999999999999999999999885                 6788899999999999999999999999999


Q ss_pred             ccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923          111 VSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       111 ~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      +++.++..|.| |||+|+..|+.+++++|+
T Consensus        67 ~~~~~d~~g~t-pl~~A~~~~~~~~~~~Ll   95 (115)
T 2l6b_A           67 DVNARSKDGNT-PEHLAKKNGHHEIVKLLD   95 (115)
T ss_dssp             CTTCCCTTCCC-TTHHHHTTTCHHHHHHHH
T ss_pred             CCcccCCCCCC-HHHHHHHCCCHHHHHHHH
Confidence            99999999999 999999999999999884

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=1.5e-23  Score=122.38  Aligned_cols=90  Identities=13%  Similarity=0.078  Sum_probs=83.1

Q ss_pred             CCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCcc
Q 038923           33 PGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVS  112 (140)
Q Consensus        33 ~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~  112 (140)
                      +..|.||||+|+..|+.+++++|++.+.++                 +..+..|+||||+|+..|+.+++++|++.|+++
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-----------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   66 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV-----------------NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI   66 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCT-----------------TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCc-----------------CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            457889999999999999999999999875                 678889999999999999999999999999999


Q ss_pred             ccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923          113 LLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       113 ~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      +.++..|+| |||+|+..|+.+++++|+
T Consensus        67 ~~~d~~g~t-pL~~A~~~~~~~~v~~Ll   93 (123)
T 3aaa_C           67 NAPDKHHIT-PLLSAVYEGHVSCVKLLL   93 (123)
T ss_dssp             TCCCTTSCC-HHHHHHHHTCHHHHHHHH
T ss_pred             CcCCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence            999999999 999999999999999884

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.90  E-value=8.5e-24  Score=129.81  Aligned_cols=118  Identities=12%  Similarity=-0.029  Sum_probs=100.0

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      .||||.|+..|+.+++++|++.+.++  +..+..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||        
T Consensus        37 ~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~  113 (172)
T 3v30_A           37 FTPLIWASAFGEIETVRFLLEWGADP--HILAKERESALSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGN  113 (172)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCT--TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCc--hhhcccCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcC
Confidence            47999999999999999999998776  66788999999999999999999999999998 68889999999        


Q ss_pred             ---------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChH
Q 038923           74 ---------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTS  123 (140)
Q Consensus        74 ---------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~  123 (140)
                               ..+..++.++..|.||+++|+..|+.+++++|++++++....+..+.| |
T Consensus       114 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~-p  171 (172)
T 3v30_A          114 HVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD-P  171 (172)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC--------
T ss_pred             CHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCC-C
Confidence                     234456778899999999999999999999999999988888877777 5

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.90  E-value=8.1e-24  Score=125.52  Aligned_cols=92  Identities=23%  Similarity=0.181  Sum_probs=86.5

Q ss_pred             hcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCC
Q 038923           30 QTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYP  109 (140)
Q Consensus        30 ~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~  109 (140)
                      +..+..|.||||+|+..|+.+++++|++.+.++                 +.++..|+||||+|+. |+.+++++|++.|
T Consensus         6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----------------~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g   67 (136)
T 1d9s_A            6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADP-----------------NALNRFGRRPIQVMMM-GSAQVAELLLLHG   67 (136)
T ss_dssp             SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-----------------TCCCTTCCTTTTTSTT-SCHHHHHHHHHHT
T ss_pred             cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-----------------CCcCCCCCCHHHHHHc-CCHHHHHHHHHCC
Confidence            567789999999999999999999999999886                 6788899999999999 9999999999999


Q ss_pred             CccccccCC-CCChHHHHHHHcCCHHHHhhhC
Q 038923          110 SVSLLEMDD-GLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       110 ~~~~~~~~~-~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      ++++.++.. |.| |||+|+..|+.+++++|+
T Consensus        68 ~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll   98 (136)
T 1d9s_A           68 AEPNCADPATLTR-PVHDAAREGFLDTLVVLH   98 (136)
T ss_dssp             CCSSCCBTTTTBC-HHHHHHHHTCHHHHHHHH
T ss_pred             CCCCCcCCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence            999999998 899 999999999999999884

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.89  E-value=1.4e-23  Score=134.53  Aligned_cols=106  Identities=18%  Similarity=0.068  Sum_probs=87.4

Q ss_pred             HHHHhhhchHHH-hhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHH
Q 038923           17 FLNLVHEDEAII-KQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYE   95 (140)
Q Consensus        17 ~~~ll~~~~~~~-~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~   95 (140)
                      ++.|++.+..+. .+..+..+.||||+|+..|+.+++++|++.|.++                 +..+..|+||||+|+.
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-----------------~~~d~~g~tpLh~A~~   63 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-----------------SQPNEEGITALHNAIC   63 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-----------------TCCCTTSCCHHHHHHH
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-----------------CCCCCCCCCHHHHHHH
Confidence            356677665542 1234466789999999999999999999999986                 6788999999999999


Q ss_pred             cCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           96 RGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        96 ~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      .|+.+++++|++.|++++..+..|+| |||+|+..|+.+++++|+
T Consensus        64 ~g~~~~v~~Ll~~ga~~n~~d~~g~t-pLh~A~~~g~~~~v~~Ll  107 (229)
T 2vge_A           64 GANYSIVDFLITAGANVNSPDSHGWT-PLHCAASCNDTVICMALV  107 (229)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999 999999999999999884

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.89  E-value=7e-24  Score=140.92  Aligned_cols=105  Identities=19%  Similarity=0.133  Sum_probs=90.1

Q ss_pred             HHHHHHHHc---CCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhh
Q 038923            3 ERLFETILK---GDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVV   79 (140)
Q Consensus         3 ~~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~   79 (140)
                      ||||.|+..   |+.+++++|++.+.++  +..+..|.||||+|+..|+.+++++|++.|+++                 
T Consensus       192 t~Lh~A~~~~~~~~~~iv~~Ll~~gadv--n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-----------------  252 (301)
T 2b0o_E          192 LVLHLAVKVANQASLPLVDFIIQNGGHL--DAKAADGNTALHYAALYNQPDCLKLLLKGRALV-----------------  252 (301)
T ss_dssp             CHHHHHHHTCCTTTHHHHHHHHHHSSCT--TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCC-----------------
T ss_pred             cHHHHHHHhcccCcHHHHHHHHhcCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-----------------
Confidence            689999997   8999999999998877  678899999999999999999999999999986                 


Q ss_pred             hccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCH
Q 038923           80 HMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL  133 (140)
Q Consensus        80 ~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~  133 (140)
                      +.+|..|.|||++|+..|+.+++++|++.|++      .|.| |||+|+..|+.
T Consensus       253 ~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~t-pLh~A~~~g~~  299 (301)
T 2b0o_E          253 GTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAF-PLHVDYSWVIS  299 (301)
T ss_dssp             SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSS-CCC--------
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCC-hhHHHHhcCCc
Confidence            68899999999999999999999999988765      5788 99999998874

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.89  E-value=3.4e-23  Score=126.56  Aligned_cols=104  Identities=19%  Similarity=0.158  Sum_probs=93.8

Q ss_pred             CCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC-----------------CchhhhhccccCCCcHHHHHHHcC
Q 038923           35 SSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP-----------------TDSWVVHMMNRNKESALYVAYERG   97 (140)
Q Consensus        35 ~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~t~l~~A~~~~   97 (140)
                      .|.||||+|+..|+.+++++|++.+.+ .+..|..|.||                 ..+..++..+..|.||||+|+..|
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG   80 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence            578999999999999999999999987 78889999999                 233445677888999999999999


Q ss_pred             CHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           98 RHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        98 ~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      +.+++++|++.|++++..+..|.| |||+|+..|+.+++++|+
T Consensus        81 ~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll  122 (167)
T 3v31_A           81 YTDIVKMLLDCGVDVNEYDWNGGT-PLLYAVHGNHVKCVKMLL  122 (167)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCcCCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999 999999999999999874

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.89  E-value=1.4e-23  Score=127.15  Aligned_cols=104  Identities=12%  Similarity=0.022  Sum_probs=81.5

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCc-HHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhh
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNT-ILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVH   80 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t-~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~   80 (140)
                      .||||.|+ .|+.++++.|++.+.++  +..+..|.| |||+|+..|+.+++++|++.|+++                 +
T Consensus        46 ~t~L~~A~-~~~~~~v~~Ll~~g~~~--~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~-----------------~  105 (156)
T 1bi7_B           46 RRPIQVMM-MGSARVAELLLLHGAEP--NCADPATLTRPVHDAAREGFLDTLVVLHRAGARL-----------------D  105 (156)
T ss_dssp             CCTTTSSC-TTCHHHHHHHHTTTCCC--CCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCS-----------------S
T ss_pred             CCHHHHHH-cCCHHHHHHHHHcCCCC--CCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCC-----------------c
Confidence            36889885 99999999999998776  678889999 999999999999999999999986                 6


Q ss_pred             ccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHH
Q 038923           81 MMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHV  126 (140)
Q Consensus        81 ~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~  126 (140)
                      .++..|+||||+|+..|+.+++++|+++|++++.++..|.| |.+-
T Consensus       106 ~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t-~~~~  150 (156)
T 1bi7_B          106 VRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARID-AAEG  150 (156)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             ccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCc-cccc
Confidence            78899999999999999999999999999999999999998 8653

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.89  E-value=4.4e-23  Score=122.31  Aligned_cols=91  Identities=22%  Similarity=0.221  Sum_probs=84.3

Q ss_pred             CCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCc
Q 038923           32 VPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSV  111 (140)
Q Consensus        32 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~  111 (140)
                      ....+.||||+|+..|+.+++++|++.+.++                 +..+..|+||||+|+..|+.+++++|++.|++
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-----------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~   72 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADV-----------------NAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD   72 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-----------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCC-----------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            3456889999999999999999999999886                 67888999999999999999999999999999


Q ss_pred             cccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923          112 SLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       112 ~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      ++..+..|.| |||+|+..|+.+++++|+
T Consensus        73 ~~~~d~~g~t-~L~~A~~~~~~~~v~~Ll  100 (136)
T 2jab_A           73 VNAVDAIGFT-PLHLAAFIGHLEIAEVLL  100 (136)
T ss_dssp             TTCCCTTCCC-HHHHHHHHTCHHHHHHHH
T ss_pred             CCcCCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence            9999999999 999999999999999884

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.88  E-value=1.1e-22  Score=124.64  Aligned_cols=107  Identities=21%  Similarity=0.179  Sum_probs=94.2

Q ss_pred             CCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC-----------------CchhhhhccccCCCcHHHHHH
Q 038923           32 VPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP-----------------TDSWVVHMMNRNKESALYVAY   94 (140)
Q Consensus        32 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~t~l~~A~   94 (140)
                      ....+.++|+.|+..|+.+++++|++.+.+ ++..+..|.||                 ..+..++..+..|.||||+|+
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   88 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA   88 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            345678999999999999999999999988 67888999999                 233446777888999999999


Q ss_pred             HcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           95 ERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        95 ~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      ..|+.+++++|++.|++++..+..|.| |||+|+..|+.+++++|+
T Consensus        89 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll  133 (169)
T 2y1l_E           89 LFGHLEIVEVLLKNGADVNANDMEGHT-PLHLAAMFGHLEIVEVLL  133 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999 999999999999999874

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.88  E-value=3.1e-22  Score=116.68  Aligned_cols=88  Identities=32%  Similarity=0.400  Sum_probs=83.2

Q ss_pred             CCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCcccc
Q 038923           35 SSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLL  114 (140)
Q Consensus        35 ~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~  114 (140)
                      +|.||||+|+..|+.+++++|++.+.++                 +..+..|.||||+|+..|+.+++++|++.|++++.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-----------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~   63 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-----------------NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA   63 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT-----------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC-----------------CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcc
Confidence            4899999999999999999999999875                 67788999999999999999999999999999999


Q ss_pred             ccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923          115 EMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       115 ~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      .+..|.| |||+|+..|+.+++++|+
T Consensus        64 ~~~~g~t-~l~~A~~~~~~~~~~~Ll   88 (126)
T 1n0r_A           64 KDKNGRT-PLHLAARNGHLEVVKLLL   88 (126)
T ss_dssp             CCTTSCC-HHHHHHHTTCHHHHHHHH
T ss_pred             cCCCCCc-HHHHHHHcChHHHHHHHH
Confidence            9999999 999999999999999874

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.88  E-value=1.1e-22  Score=123.55  Aligned_cols=104  Identities=23%  Similarity=0.189  Sum_probs=93.8

Q ss_pred             CCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC----------------CchhhhhccccCCCcHHHHHHHcCC
Q 038923           35 SSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP----------------TDSWVVHMMNRNKESALYVAYERGR   98 (140)
Q Consensus        35 ~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~t~l~~A~~~~~   98 (140)
                      ...||||+|+..|+.+++++|++.+.+ ++..+..|.||                ..+..++.++..|+||||+|+..|+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   82 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   82 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCC-TTCCCTTSCCHHHHCCSSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCC-ccccCccCccHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            467999999999999999999999987 68888999998                2234456778899999999999999


Q ss_pred             HHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           99 HDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        99 ~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      .+++++|++.|++++.++..|.| |||+|+..|+.+++++|+
T Consensus        83 ~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll  123 (162)
T 1ihb_A           83 LDTLQTLLEFQADVNIEDNEGNL-PLHLAAKEGHLRVVEFLV  123 (162)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999 999999999999999884

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.88  E-value=1.3e-22  Score=122.65  Aligned_cols=104  Identities=17%  Similarity=0.075  Sum_probs=93.3

Q ss_pred             CCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC----------------CchhhhhccccCCCcHHHHHHHcCCH
Q 038923           36 SNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP----------------TDSWVVHMMNRNKESALYVAYERGRH   99 (140)
Q Consensus        36 g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~t~l~~A~~~~~~   99 (140)
                      +.||||+|+..|+.+++++|++.....++..+..|.||                ..+..++.++..|.||||+|+..|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   81 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH
Confidence            46899999999999999999999443478889999999                23445677888999999999999999


Q ss_pred             HHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923          100 DVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       100 ~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      +++++|++.|++++..+..|.| |||+|+..|+.+++++|+
T Consensus        82 ~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll  121 (156)
T 1bd8_A           82 DTLKVLVEHGADVNVPDGTGAL-PIHLAVQEGHTAVVSFLA  121 (156)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCC-HHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCc-HHHHHHHhChHHHHHHHH
Confidence            9999999999999999999999 999999999999999884

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.88  E-value=1.7e-24  Score=147.55  Aligned_cols=112  Identities=16%  Similarity=0.107  Sum_probs=95.8

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHH-hhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhc
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAII-KQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHM   81 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~-~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   81 (140)
                      +|||.|++.|+.+++++|++.+++.. .+..+.+ .||||+|+..|+.+++++|+++|+++                 +.
T Consensus       130 tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~-----------------~~  191 (376)
T 2aja_A          130 QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTE-----------------AT  191 (376)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGG-----------------HH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCcc-----------------ch
Confidence            59999999999999999999986310 1122223 89999999999999999999999975                 44


Q ss_pred             --cccCCCcHHHHHH-HcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           82 --MNRNKESALYVAY-ERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        82 --~~~~~~t~l~~A~-~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                        .+..|.||||+|+ ..|+.+++++|++.|+       .+.| ||++|+..|+.+++++|+
T Consensus       192 ~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~t-aL~~Aa~~g~~evv~lL~  245 (376)
T 2aja_A          192 AMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAY-AEIHEFEYGEKYVNPFIA  245 (376)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHH-HHHCTTTTTTTTHHHHHH
T ss_pred             hccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccch-HHHHHHHCCCHHHHHHHH
Confidence              6778999999999 9999999999998764       2677 999999999999999874

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.88  E-value=3.2e-22  Score=120.68  Aligned_cols=102  Identities=16%  Similarity=0.095  Sum_probs=91.5

Q ss_pred             CCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC-----------------CchhhhhccccCCCcHHHHHHHcCC
Q 038923           36 SNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP-----------------TDSWVVHMMNRNKESALYVAYERGR   98 (140)
Q Consensus        36 g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~t~l~~A~~~~~   98 (140)
                      ..++||.|+..|+.+++++|++.+.+. . .+..|.||                 ..+..++..+..|+||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence            358999999999999999999999874 2 57889998                 3444567788899999999999999


Q ss_pred             HHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           99 HDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        99 ~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      .+++++|++.|++++..+..|.| |||+|+..|+.+++++|+
T Consensus        80 ~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll  120 (153)
T 1awc_B           80 ANIVEVLLKHGADVNAKDMLKMT-ALHWATEHNHQEVVELLI  120 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999 999999999999999884

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.87  E-value=3.2e-22  Score=127.40  Aligned_cols=91  Identities=24%  Similarity=0.202  Sum_probs=85.1

Q ss_pred             CCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcC-CC
Q 038923           32 VPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNY-PS  110 (140)
Q Consensus        32 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~-~~  110 (140)
                      .+..|.||||+|+..|+.+++++|++.+.++                 +..+..|+||||+|+..|+.+++++|++. |+
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~  131 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGV-----------------NGLDKAGSTALYWACHGGHKDIVEMLFTQPNI  131 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-----------------TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTC
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCc-----------------cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCC
Confidence            3457899999999999999999999999886                 67888999999999999999999999998 99


Q ss_pred             ccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923          111 VSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       111 ~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      +++.++..|+| |||+|+..|+.+++++|+
T Consensus       132 ~~~~~d~~g~t-pL~~A~~~~~~~~v~~Ll  160 (222)
T 3ehr_A          132 ELNQQNKLGDT-ALHAAAWKGYADIVQLLL  160 (222)
T ss_dssp             CCCCCCTTSCC-HHHHHHHHTCHHHHHHHH
T ss_pred             CccccCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence            99999999999 999999999999999884

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.86  E-value=7.7e-22  Score=122.38  Aligned_cols=88  Identities=23%  Similarity=0.203  Sum_probs=82.1

Q ss_pred             CCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccc
Q 038923           34 GSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSL  113 (140)
Q Consensus        34 ~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~  113 (140)
                      ..|.||||+|+..|+.+++++|++ +.++                 +..+..|+||||+|+..|+.+++++|++.|++++
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-----------------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  103 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-DRDV-----------------DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD  103 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-TSCT-----------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCCC-----------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            468999999999999999999999 7765                 6788999999999999999999999999999999


Q ss_pred             ccc-CCCCChHHHHHHHcCCHHHHhhhC
Q 038923          114 LEM-DDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       114 ~~~-~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      ..+ ..|+| |||+|+..|+.+++++|+
T Consensus       104 ~~~~~~g~t-pL~~A~~~~~~~~v~~Ll  130 (183)
T 3deo_A          104 HRDMRGGLT-ALHMAAGYVRPEVVEALV  130 (183)
T ss_dssp             CCCSSSSCC-HHHHHHHTTCHHHHHHHH
T ss_pred             cCCCCCCCC-HHHHHHhcCcHHHHHHHH
Confidence            888 78999 999999999999999884

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.85  E-value=7e-21  Score=109.04  Aligned_cols=85  Identities=20%  Similarity=0.306  Sum_probs=78.9

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhc
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHM   81 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   81 (140)
                      .++||.|+..|+.+.++.|++.+.++  +..+..|.||||+|+..|+.+++++|++.|+++                 +.
T Consensus        25 ~t~L~~A~~~g~~~~v~~Ll~~g~~i--~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-----------------~~   85 (110)
T 2zgd_A           25 GKKLLEAARAGQDDEVRILMANGADV--AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-----------------XA   85 (110)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-----------------TC
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCC--CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-----------------cc
Confidence            36899999999999999999998776  667889999999999999999999999999986                 67


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHH
Q 038923           82 MNRNKESALYVAYERGRHDVVKQL  105 (140)
Q Consensus        82 ~~~~~~t~l~~A~~~~~~~~~~~L  105 (140)
                      ++..|+||||+|+..|+.+++++|
T Consensus        86 ~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           86 QDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cccCCCcHHHHHHHcCCHHHHHHh
Confidence            889999999999999999999987

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.85  E-value=1.4e-21  Score=126.31  Aligned_cols=88  Identities=23%  Similarity=0.203  Sum_probs=82.1

Q ss_pred             CCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccc
Q 038923           34 GSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSL  113 (140)
Q Consensus        34 ~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~  113 (140)
                      ..|.||||+|+..|+.+++++|++ +.++                 +..+..|+||||+|+..|+.+++++|++.|++++
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-----------------~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~  104 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDV-----------------DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD  104 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCT-----------------TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCC-----------------CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC
Confidence            468999999999999999999999 7765                 6788999999999999999999999999999999


Q ss_pred             ccc-CCCCChHHHHHHHcCCHHHHhhhC
Q 038923          114 LEM-DDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       114 ~~~-~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      ..+ ..|.| |||+|+..|+.+++++|+
T Consensus       105 ~~~~~~g~t-~L~~A~~~g~~~~v~~Ll  131 (244)
T 3ui2_A          105 HRDMRGGLT-ALHMAAGYVRPEVVEALV  131 (244)
T ss_dssp             CCCSSSCCC-HHHHHHHTTCHHHHHHHH
T ss_pred             cCCCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence            888 67999 999999999999999884

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.84  E-value=6.4e-21  Score=125.43  Aligned_cols=91  Identities=16%  Similarity=0.141  Sum_probs=85.2

Q ss_pred             CHHHHHHHHc---CCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhh
Q 038923            2 DERLFETILK---GDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWV   78 (140)
Q Consensus         2 ~~~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~   78 (140)
                      .||||.|+..   |+.++++.|++.+.++  +..|..|.||||+|+..|+.+++++|++.|+++                
T Consensus       170 ~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i--n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~----------------  231 (278)
T 1dcq_A          170 ETALHLAVRSVDRTSLHIVDFLVQNSGNL--DKQTGKGSTALHYCCLTDNAECLKLLLRGKASI----------------  231 (278)
T ss_dssp             CBHHHHHHHHCCTTTHHHHHHHHHHCSCT--TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT----------------
T ss_pred             CCcchHHHHhcccchHHHHHHHHHCCCCc--cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC----------------
Confidence            4799999999   8999999999998887  678899999999999999999999999999986                


Q ss_pred             hhccccCCCcHHHHHHHcCCHHHHHHHHcCCCc
Q 038923           79 VHMMNRNKESALYVAYERGRHDVVKQLLNYPSV  111 (140)
Q Consensus        79 ~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~  111 (140)
                       +.+|..|.||||+|+..|+.+++++|++.|++
T Consensus       232 -~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          232 -EIANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             -TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             -CCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence             78899999999999999999999999988775

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.81  E-value=1e-19  Score=123.72  Aligned_cols=110  Identities=16%  Similarity=0.138  Sum_probs=83.0

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhc
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHM   81 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   81 (140)
                      .||||.|+..|+.++++.|++.+.++  +..+..|.||||+|+..|+.+++++|++.|+++                 +.
T Consensus       236 ~TpLh~Aa~~g~~~iv~~LL~~Gadv--n~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~-----------------~~  296 (368)
T 3jue_A          236 ATPLIQATAANSLLACEFLLQNGANV--NQADSAGRGPLHHATILGHTGLACLFLKRGADL-----------------GA  296 (368)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-----------------TC
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCC-----------------CC
Confidence            47999999999999999999998877  678899999999999999999999999999986                 78


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHcCC---CccccccCCCCChHHHHHHHcC
Q 038923           82 MNRNKESALYVAYERGRHDVVKQLLNYP---SVSLLEMDDGLTTSLHVAASAG  131 (140)
Q Consensus        82 ~~~~~~t~l~~A~~~~~~~~~~~L~~~~---~~~~~~~~~~~t~~l~~A~~~g  131 (140)
                      .|..|.||||+|+..|+.+++++|+..+   .+....+..+.| +++++....
T Consensus       297 ~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t-~l~i~~~~~  348 (368)
T 3jue_A          297 RDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDET-YLDIFRDFS  348 (368)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------------
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCC-HHHHHHHHH
Confidence            8999999999999999999999999654   333344545666 887765543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	140
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.002
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.004
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.004

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 1e-06
 Identities = 18/118 (15%), Positives = 39/118 (33%), Gaps = 21/118 (17%)

Query: 37  NTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWV------------------ 78
            T L  A+   H E+   +L      + A ++         +                  
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208

Query: 79  ---VHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
              V++     ++ L +A E+    +V++LL    + + + D    T+L +A      
Sbjct: 209 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLK 266

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-05
 Identities = 29/103 (28%), Positives = 39/103 (37%), Gaps = 18/103 (17%)

Query: 38  TILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERG 97
           T LH+AS   H    L I+K   +  A+PN               N   E+ L++A   G
Sbjct: 2   TPLHVASFMGH----LPIVKNLLQRGASPNVS-------------NVKVETPLHMAARAG 44

Query: 98  RHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV 140
             +V K LL      +        T LH AA  GH      L+
Sbjct: 45  HTEVAKYLLQN-KAKVNAKAKDDQTPLHCAARIGHTNMVKLLL 86

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 3e-04
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 17/113 (15%)

Query: 37  NTILHLASRYEHEELALEILKLCPEMLAAPNDKF----------------ETPTDSWVVH 80
            T LHL ++  H  +A  ++K    + A     +                        V+
Sbjct: 265 LTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN 324

Query: 81  MMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
              +   S L+ A ++G  D+V  LL     S  E+    TT L +A   G++
Sbjct: 325 AKTKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVSSDGTTPLAIAKRLGYI 376

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 36.8 bits (84), Expect = 3e-04
 Identities = 19/127 (14%), Positives = 34/127 (26%), Gaps = 8/127 (6%)

Query: 16  NFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTD 75
           N          +   T+       + L      E++  ++L L          +  +   
Sbjct: 26  NLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVR-QLLCLYYAHYNRNAKQLWSD-- 82

Query: 76  SWVVHMMNRNKESALYVAYERGRHDVVK--QLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
               H      E   +VA   G    +    LL      +  +      +  +AA  GHL
Sbjct: 83  ---AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHL 139

Query: 134 GTFANLV 140
                L 
Sbjct: 140 HVLNRLC 146

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 36.8 bits (84), Expect = 4e-04
 Identities = 12/74 (16%), Positives = 20/74 (27%), Gaps = 12/74 (16%)

Query: 38  TILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERG 97
             L   +     +    +L +      AP               +  +    L +A   G
Sbjct: 281 RNLIRRNDEVLLDDIRFLLSIPGIKALAPTA------------TIPGDANELLRLALRLG 328

Query: 98  RHDVVKQLLNYPSV 111
                  LL+ PSV
Sbjct: 329 NQGACALLLSIPSV 342

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (81), Expect = 7e-04
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 89  ALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
            L+ A        V++LL+     LL+ D      LH + S    
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH 47

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 34.7 bits (78), Expect = 0.002
 Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 1/78 (1%)

Query: 56  LKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLE 115
           L    ++   P  K+            + + ++ + +A + GR +VV  L+     S+  
Sbjct: 191 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEA 249

Query: 116 MDDGLTTSLHVAASAGHL 133
           +D    T+  +A +  H 
Sbjct: 250 VDATDHTARQLAQANNHH 267

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 33.9 bits (76), Expect = 0.004
 Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 87  ESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV 140
           ES + +  E      + + +   SV++++     T  LH  AS        +L+
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIIDPRHNRT-VLHWIASNSSAEKSEDLI 53

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (75), Expect = 0.004
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 37 NTILHLASRYEHEELALEILKLCPEMLAAPNDK 69
          ++ LHLA  +E + L +E+++     LA  N +
Sbjct: 3  DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ 35

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	140
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.97
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.97
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.97
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.94
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.94
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.9
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.9
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.88
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.88
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.88
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.87
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.87
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.81
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.79
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.78
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.77
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.76
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.76
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.75

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.9e-32  Score=156.61  Aligned_cols=118  Identities=14%  Similarity=0.048  Sum_probs=107.7

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhc
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHM   81 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   81 (140)
                      .++||.|++.|++++++.|++.+.++  +..+..|.||+|+| ..|+.+++++|++.|+++                 +.
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~--n~~~~~g~t~l~~a-~~g~~~~v~~Ll~~ga~~-----------------~~   63 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGANP--NAPNSYGRRPIQVM-MMGSARVAELLLLHGAEP-----------------NC   63 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCT--TCCCSSSCCTTTSS-CTTCHHHHHHHHTTTCCC-----------------CC
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCcc--cccccccccccccc-cccccccccccccccccc-----------------cc
Confidence            46899999999999999999998776  67889999999976 479999999999999985                 56


Q ss_pred             cccCCC-cHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           82 MNRNKE-SALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        82 ~~~~~~-t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      ++..+. +|||+|+..|+.+++++|++.|++++.++..|+| |||+|+++|+.+++++|+
T Consensus        64 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T-~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          64 ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRL-PVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             CCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCC-HHHHHHHHTCHHHHHHHS
T ss_pred             ccccccccccccccccccccccccccccccccccccCCCCC-HHHHHHHcCCHHHHHHHH
Confidence            666664 7999999999999999999999999999999999 999999999999999985

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.5e-30  Score=155.91  Aligned_cols=133  Identities=20%  Similarity=0.177  Sum_probs=116.8

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      .|||+.|++.|+.++++.|++.++..  + .+..|+||||+|+..++.+++..++..... ....+..+.++        
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~--~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPF--T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC--C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCc--c-cccCCCcccccccccccccccccccccccc-ccccccccccccccccccc
Confidence            48999999999999999999998764  3 678999999999999999999999988776 34555555555        


Q ss_pred             ---------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923           74 ---------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus        74 ---------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                               ......+.++..|+||||+|+..|+.+++++|++.|++++..+..|.| |||+|+.+|+.|++++|
T Consensus        79 ~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~T-pl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          79 HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKT-AFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHH
T ss_pred             cceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCC-HHHHHHHcCCHHHHHhC
Confidence                     333445678899999999999999999999999999999999999999 99999999999999987

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=8.8e-32  Score=174.58  Aligned_cols=137  Identities=14%  Similarity=0.072  Sum_probs=119.7

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHH------HhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAI------IKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~------~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--   73 (140)
                      .||||.||..|+.++++.|+......      ..+..|..|.||||+|+..|+.+++++|+++|++ ++.++.+|.+|  
T Consensus        34 ~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad-~n~~~~~g~t~l~  112 (277)
T d2fo1e1          34 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNKSERSALH  112 (277)
T ss_dssp             CCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccccc-ccccccccccccc
Confidence            37999999999999999987654332      1256889999999999999999999999999998 67888899998  


Q ss_pred             --------------------------------------------------------------------------------
Q 038923           74 --------------------------------------------------------------------------------   73 (140)
Q Consensus        74 --------------------------------------------------------------------------------   73 (140)
                                                                                                      
T Consensus       113 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  192 (277)
T d2fo1e1         113 QAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALH  192 (277)
T ss_dssp             HHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHH
T ss_pred             chhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccc
Confidence                                                                                            


Q ss_pred             ----------------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHh
Q 038923           74 ----------------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFA  137 (140)
Q Consensus        74 ----------------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~  137 (140)
                                      ..+...+.++..|+||||+|+..|+.+++++|++.|++++.+|.+|.| |||+|+++|+.++++
T Consensus       193 ~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T-~L~~A~~~~~~~iv~  271 (277)
T d2fo1e1         193 YAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHT-ARQLAQANNHHNIVD  271 (277)
T ss_dssp             HHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCC-HHHHHHHTTCHHHHH
T ss_pred             cccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCC-HHHHHHHcCCHHHHH
Confidence                            122234567788999999999999999999999999999999999999 999999999999999


Q ss_pred             hhC
Q 038923          138 NLV  140 (140)
Q Consensus       138 ~Ll  140 (140)
                      +|+
T Consensus       272 lL~  274 (277)
T d2fo1e1         272 IFD  274 (277)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            873

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.2e-30  Score=167.75  Aligned_cols=71  Identities=14%  Similarity=0.063  Sum_probs=63.3

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHH-HhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAI-IKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~-~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~   73 (140)
                      .||||.||+.|+.+++++|++.++.. ..+..+..|.||||+|+..|+.+++++|++.|++ ++.+|.+|.+|
T Consensus        10 ~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-i~~~d~~g~tp   81 (255)
T d1oy3d_          10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-VLVAERGGHTA   81 (255)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTSCCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccccc-ccccccccchh
Confidence            58999999999999999999987543 2356788999999999999999999999999998 67889999998

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=4.2e-32  Score=156.52  Aligned_cols=107  Identities=21%  Similarity=0.262  Sum_probs=101.3

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhc
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHM   81 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   81 (140)
                      ||||++|++.|+.+.++.|++.+.++  +..+..|+||||+|+..|+.+++++|++.|+++                 +.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~--n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di-----------------n~   63 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV--NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-----------------NA   63 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC--CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT-----------------TC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc--cccccccccccccccccccccccccccccccee-----------------ee
Confidence            68999999999999999999998776  678899999999999999999999999999986                 77


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHH
Q 038923           82 MNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAA  128 (140)
Q Consensus        82 ~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~  128 (140)
                      ++..|+||||+|+.+|+.+++++|++.|++++.++..|.| |||+|.
T Consensus        64 ~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t-~l~~a~  109 (118)
T d1myoa_          64 PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLT-ALEATD  109 (118)
T ss_dssp             CSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCC-CCCTCS
T ss_pred             cccccccchhhhhhcCchhhhhhhhcccccceeeCCCCCC-HHHHHh
Confidence            8999999999999999999999999999999999999999 999884

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.3e-30  Score=174.88  Aligned_cols=68  Identities=25%  Similarity=0.293  Sum_probs=63.4

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP   73 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~   73 (140)
                      ||||.||..|+.++|++|++.+.++  +..|..|+||||+|+..|+.+++++|+++|++ ++.++.+|.+|
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~i--n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad-i~~~~~~g~t~   69 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASP--NVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTP   69 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCS--CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTSCCH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCCCCCCCCH
Confidence            7999999999999999999998776  67889999999999999999999999999998 68888889887

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.2e-30  Score=151.62  Aligned_cols=118  Identities=16%  Similarity=0.099  Sum_probs=106.6

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhcc
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMM   82 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (140)
                      +.|+.|++.|+.++++.|++.+.++  +..+..|+||||+|+..|+.+++++|++.+.+.                 +.+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~--n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-----------------~~~   63 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP--SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-----------------NAA   63 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC--CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-----------------TCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc--ccccccccccccccccccccccccccccccccc-----------------ccc
Confidence            4689999999999999999998877  778899999999999999999999999999986                 678


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccC-CCCChHHHHH--HHcCCHHHHhhhC
Q 038923           83 NRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMD-DGLTTSLHVA--ASAGHLGTFANLV  140 (140)
Q Consensus        83 ~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~-~~~t~~l~~A--~~~g~~~~~~~Ll  140 (140)
                      |..|+||||+|+.+|+.+++++|+++|++++..+. .++| |++.+  +..|+.+++++|+
T Consensus        64 d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~-~~~~~~a~~~g~~eiv~~L~  123 (130)
T d1ycsb1          64 DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQT-AADKCEEMEEGYTQCSQFLY  123 (130)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCC-HHHHCCSSSTTCCCHHHHHH
T ss_pred             cccCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCC-HHHHHHHHHcChHHHHHHHH
Confidence            99999999999999999999999999999997765 4777 76654  6789999999884

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.8e-30  Score=155.16  Aligned_cols=133  Identities=16%  Similarity=0.132  Sum_probs=118.4

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC---------
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP---------   73 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~---------   73 (140)
                      ++||.|+..|++++++.|++.+.++  +..|..|.||||+|+ .|+.+++++|++++++ ++..+..+.++         
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~--n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~-~~~~~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV--NAQNGFGRTALQVMK-LGNPEIARRLLLRGAN-PDLKDRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT--TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc--CccCCcccccccccc-cccccccccccccccc-cccccccCcccccccccccc
Confidence            6899999999999999999998887  678899999999875 7999999999999998 67888888888         


Q ss_pred             --------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCC-ccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           74 --------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPS-VSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 --------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~-~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                              ......+..+..+.+|+++|+..++.+++++|+++++ +.+.++..|.| |||+|++.|+.+++++|+
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~T-pL~~A~~~~~~~iv~~Ll  153 (156)
T d1ihba_          79 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT-ACDLARLYGRNEVVSLMQ  153 (156)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence                    1223356678899999999999999999999998775 78889989999 999999999999999984

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-29  Score=152.61  Aligned_cols=132  Identities=22%  Similarity=0.233  Sum_probs=115.5

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhch-HHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            3 ERLFETILKGDVPNFLNLVHEDE-AIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~-~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      ++|+.||..|+++.++.|++.+. ++  +..|..|+||||+|+ +|+.+++++|++.+.+ ++..+..|.+|        
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~--n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~-~~~~~~~~~~~l~~~~~~~   79 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHP--DALNRFGKTALQVMM-FGSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCT--TCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCC--CccCCCCCccccccc-cccccccccccccccc-ccccccccccccccccccc
Confidence            47999999999999999998754 43  667899999999986 5889999999999988 67778888888        


Q ss_pred             ---------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           74 ---------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 ---------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                               ..+..++.++..|+||||+|+..|+.+++++|+ .|++++.++..|+| |||+|+..|+.+++++|+
T Consensus        80 ~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~T-pL~~A~~~g~~~iv~~Ll  153 (156)
T d1bd8a_          80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLT-PLELALQRGAQDLVDILQ  153 (156)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCC-HHHHHHHSCCHHHHHHHH
T ss_pred             cccccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence                     223345778889999999999999999999888 68999999999999 999999999999999884

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.1e-29  Score=159.51  Aligned_cols=137  Identities=18%  Similarity=0.213  Sum_probs=116.4

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcc--cCCCCCCCCCC------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEM--LAAPNDKFETP------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~--~~~~~~~~~~~------   73 (140)
                      ++|||.||+.|+.+.++.|++..+... +..|.+|+||||+|+..|+.+++++|+++|+++  ....+..|.+|      
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLL-LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcc-cccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccc
Confidence            479999999999999999999876543 568899999999999999999999999999863  24566677777      


Q ss_pred             ----------------------------------------------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHc
Q 038923           74 ----------------------------------------------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLN  107 (140)
Q Consensus        74 ----------------------------------------------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~  107 (140)
                                                                    ..+...+..+..|+||||+|+..|+.+++++|++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  159 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  159 (229)
T ss_dssp             HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccc
Confidence                                                          1122234567889999999999999999999998


Q ss_pred             CC-CccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923          108 YP-SVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       108 ~~-~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      .+ .+++.++.+|+| |||+|+..|+.+++++|+
T Consensus       160 ~~~~~in~~d~~g~T-pLh~A~~~~~~~~v~~Ll  192 (229)
T d1ixva_         160 LGKSAVNWQDKQGWT-PLFHALAEGHGDAAVLLV  192 (229)
T ss_dssp             TTCCCSCCCCTTSCC-HHHHHHHTTCHHHHHHHH
T ss_pred             cccccccccccccCC-chhhhcccccHHHHHHHH
Confidence            76 678889989999 999999999999999874

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.8e-30  Score=161.94  Aligned_cols=132  Identities=22%  Similarity=0.166  Sum_probs=113.0

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhh----chHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC----
Q 038923            2 DERLFETILKGDVPNFLNLVHE----DEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP----   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~----~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~----   73 (140)
                      +||||.||..|+.++++.|++.    +.++  +..|..|+||||+|+..|+.+++++|++.+++ .+..+..+.++    
T Consensus         4 ~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i--n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           4 DTPLHIAVVQGNLPAVHRLVNLFQQGGREL--DIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-PMALDRHGQTAAHLA   80 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHHHTTCCS--CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CccCCCCCccceehhccccccccccccccccc-ccccccccccccccc
Confidence            5899999999999999999864    3333  56788999999999999999999999999987 45566666665    


Q ss_pred             --------------------------------------------------------------------------------
Q 038923           74 --------------------------------------------------------------------------------   73 (140)
Q Consensus        74 --------------------------------------------------------------------------------   73 (140)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence                                                                                            


Q ss_pred             ----CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHh
Q 038923           74 ----TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFA  137 (140)
Q Consensus        74 ----~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~  137 (140)
                          ..+...+.++..|.||||+|+..|+.+++++|++.|++++.++..|.| |||+|+++|+.+++|
T Consensus       161 ~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~T-pL~~A~~~~~~divk  227 (228)
T d1k1aa_         161 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDT-PLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC-TTTTCSSHHHHHHHT
T ss_pred             hhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC-HHHHHHhCCCccccC
Confidence                122335667788999999999999999999999999999999999999 999999999999886

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.4e-28  Score=146.42  Aligned_cols=119  Identities=18%  Similarity=0.152  Sum_probs=105.2

Q ss_pred             HHHHHHHcCCHHHHHHHhhhchHHHh----hcCCCCCCcHHHHHHhh---CcHHHHHHHHhhCCcccCCCCCCCCCCCch
Q 038923            4 RLFETILKGDVPNFLNLVHEDEAIIK----QTVPGSSNTILHLASRY---EHEELALEILKLCPEMLAAPNDKFETPTDS   76 (140)
Q Consensus         4 ~l~~a~~~g~~~~~~~ll~~~~~~~~----~~~~~~g~t~l~~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~   76 (140)
                      .|+.|++.+++..+..++..+.+...    ...+..|.||||+|+..   |+.+++++|++.|+++              
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi--------------   74 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL--------------   74 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT--------------
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh--------------
Confidence            46789999999999999887654421    12356799999999975   6789999999999986              


Q ss_pred             hhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           77 WVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        77 ~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                         +.++..|+||||+|+..|+.+++++|++.|++++.++..|+| |||+|++.|+.+++++|+
T Consensus        75 ---n~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t-pL~~A~~~~~~~i~~~L~  134 (154)
T d1dcqa1          75 ---DKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGET-PLDIAKRLKHEHCEELLT  134 (154)
T ss_dssp             ---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHH
T ss_pred             ---hhhhhhhccccccccccccccccccccccCccccccCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence               788999999999999999999999999999999999999999 999999999999999874

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=3.9e-29  Score=156.34  Aligned_cols=123  Identities=19%  Similarity=0.211  Sum_probs=106.3

Q ss_pred             HHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------------------
Q 038923           14 VPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------------------   73 (140)
Q Consensus        14 ~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------------------   73 (140)
                      .|+|+.|+++++++. ...|.+|.||||+||.+|+.+++++|++.++. ++.++..+.++                    
T Consensus         2 ~~~v~~Ll~~g~din-~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (209)
T d1ot8a_           2 AQVISDLLAQGAELN-ATMDKTGETSLHLAARFARADAAKRLLDAGAD-ANSQDNTGRTPLHAAVAADAMGVFQILLRNR   79 (209)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHTCT
T ss_pred             HHHHHHHHHCCCCcC-cCcCCCCCCHHHHHHHcCCHHHHHHHHhhccc-ccccccccccccccccccccccccccccccc
Confidence            478999999988862 22467899999999999999999999999887 56777777776                    


Q ss_pred             ----------------------------------------------------------------CchhhhhccccCCCcH
Q 038923           74 ----------------------------------------------------------------TDSWVVHMMNRNKESA   89 (140)
Q Consensus        74 ----------------------------------------------------------------~~~~~~~~~~~~~~t~   89 (140)
                                                                                      ..+..++..+..|.||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~Tp  159 (209)
T d1ot8a_          80 ATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETP  159 (209)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccc
Confidence                                                                            1233357778899999


Q ss_pred             HHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923           90 LYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus        90 l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                      ||+|+..|+.+++++|++.|++++.++..|+| |||+|+++|+.++|++|
T Consensus       160 L~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~T-pl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         160 LFLAAREGSYEASKALLDNFANREITDHMDRL-PRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHH
T ss_pred             cchhccccHHHHHHHHHHCCCCCCCcCCCCCC-HHHHHHHcCCHHHHhhc
Confidence            99999999999999999999999999999999 99999999999999987

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1e-28  Score=156.31  Aligned_cols=130  Identities=18%  Similarity=0.159  Sum_probs=105.0

Q ss_pred             HHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC------------
Q 038923            6 FETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP------------   73 (140)
Q Consensus         6 ~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~------------   73 (140)
                      +.++..|+.++++.|++.+.++  +..+..|.||||+|+.+|+.+++++|++.|.+ ++..+..|.+|            
T Consensus        75 ~~~~~~~~~~i~~~Ll~~~~d~--~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d-~~~~~~~~~t~L~~a~~~~~~~~  151 (223)
T d1uoha_          75 HIAASAGRDEIVKALLGKGAQV--NAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKM  151 (223)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             cccccccccchhHHHhccCcee--EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCccchhhhhcCCcch
Confidence            3333333444444444443333  45778899999999999999999999999988 67888899998            


Q ss_pred             -----CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           74 -----TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        74 -----~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                           .....++.++..|+||||.|+..|+.+++++|++.|++++.+|.+|+| |||+| ..|+.++++.||
T Consensus       152 ~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~t-pl~~A-~~~~~~i~~~Ll  221 (223)
T d1uoha_         152 IHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKT-PLQVA-KGGLGLILKRMV  221 (223)
T ss_dssp             HHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCC-HHHHC-CTTHHHHHHHHH
T ss_pred             hhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCC-HHHHH-HCCCHHHHhccc
Confidence                 233446788899999999999999999999999999999999999999 99998 579999999875

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=2.4e-28  Score=159.45  Aligned_cols=134  Identities=22%  Similarity=0.214  Sum_probs=115.0

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC---------
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP---------   73 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~---------   73 (140)
                      |+|+.||..|+++.|+.|++.|.++  +..+.+|.||||+|+..|+.+++++|++++.+ ....+..+.+|         
T Consensus        42 t~l~~A~~~G~~~~v~~Ll~~Gadv--n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~-~~~~~~~~~~~L~~a~~~~~  118 (291)
T d1s70b_          42 AVFLAACSSGDTEEVLRLLERGADI--NYANVDGLTALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAASCGY  118 (291)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHCCCT--TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTC
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCC--CccCCCCCcHHHHHHhcCCceeeeeecccccc-cccccccccccccccccccc
Confidence            6899999999999999999998876  67889999999999999999999999999986 45555556665         


Q ss_pred             --------------------------------------------------------------------CchhhhhccccC
Q 038923           74 --------------------------------------------------------------------TDSWVVHMMNRN   85 (140)
Q Consensus        74 --------------------------------------------------------------------~~~~~~~~~~~~   85 (140)
                                                                                          .........+..
T Consensus       119 ~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (291)
T d1s70b_         119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS  198 (291)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTT
T ss_pred             cchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCC
Confidence                                                                                001112334567


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           86 KESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        86 ~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      |.||||.|+..|+.+++++|++.|++++.++..|+| |||+|+..|+.+++++|+
T Consensus       199 g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~T-pL~~A~~~g~~~iv~lLl  252 (291)
T d1s70b_         199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWT-PLHAAAHWGKEEACRILV  252 (291)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHH
T ss_pred             CCChhhHHHHcCChhhhcccccceecccccccCCCC-HHHHHHHcCCHHHHHHHH
Confidence            889999999999999999999999999999999999 999999999999999884

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.8e-29  Score=159.42  Aligned_cols=134  Identities=18%  Similarity=0.102  Sum_probs=100.1

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhh----chHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC----
Q 038923            2 DERLFETILKGDVPNFLNLVHE----DEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP----   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~----~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~----   73 (140)
                      +||||.|+..|+.+.++.+++.    +..+  +..+..|.||||+|+..|+.+++++|++.|++ +...|..|.+|    
T Consensus         3 ~t~Lh~A~~~g~~~~~~~li~~~~~~~~~i--n~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d-~~~~d~~g~t~l~~~   79 (221)
T d1iknd_           3 DSFLHLAIIHEEKALTMEVIRQVKGDLAFL--NFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCTTHHHHHTTCSSSSSCCCC-----CCCC--CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-SCCCCTTCCCHHHHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHhCCCCc--ccCCCCCCcccccccccccccccccccccccc-ccccccccccccccc
Confidence            5677777777776665554442    2222  45667777777777777777777777777776 56667777776    


Q ss_pred             ----------------------------------------------------Cchhhhhc-cccCCCcHHHHHHHcCCHH
Q 038923           74 ----------------------------------------------------TDSWVVHM-MNRNKESALYVAYERGRHD  100 (140)
Q Consensus        74 ----------------------------------------------------~~~~~~~~-~~~~~~t~l~~A~~~~~~~  100 (140)
                                                                          ..+..++. .+..|.||||.|+..|+.+
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~  159 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD  159 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHH
Confidence                                                                11111222 3457899999999999999


Q ss_pred             HHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923          101 VVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus       101 ~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                      ++++|++.|++++.++..|+| |||+|+..++.+++++|
T Consensus       160 ~v~~Ll~~gad~~~~~~~G~t-pl~~A~~~~~~~~~~~l  197 (221)
T d1iknd_         160 LVSLLLKCGADVNRVTYQGYS-PYQLTWGRPSTRIQQQL  197 (221)
T ss_dssp             HHHHHHTTTCCSCCCCTTCCC-GGGGCTTSSCHHHHHHH
T ss_pred             HHHHHHhcCCcccccCCCCCC-HHHHHHHCCCHHHHHHH
Confidence            999999999999999999999 99999999999999877

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8.2e-27  Score=151.50  Aligned_cols=136  Identities=18%  Similarity=0.137  Sum_probs=113.2

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      ++.|+.|++.|++++++.|++.++++. ...+..|+||||+|+..|+.+++++|++.+.. ....+..+.+|        
T Consensus         6 ~~~L~~Ai~~~~~e~vk~Ll~~G~din-~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~-~~~~~~~~~~~~~~~~~~~   83 (285)
T d1wdya_           6 NHLLIKAVQNEDVDLVQQLLEGGANVN-FQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHT
T ss_pred             cHHHHHHHHcCCHHHHHHHHHCCCCcC-ccCCCCCCCHHHHHHHcCCHHHhhhhcccccc-ccccccccchhhHHHhhcC
Confidence            378999999999999999999988762 23446799999999999999999999999886 34444444444        


Q ss_pred             --------------------------------------------------------------------------------
Q 038923           74 --------------------------------------------------------------------------------   73 (140)
Q Consensus        74 --------------------------------------------------------------------------------   73 (140)
                                                                                                      
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  163 (285)
T d1wdya_          84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  163 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred             CccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHH
Confidence                                                                                            


Q ss_pred             -------------------------------------------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHc-CC
Q 038923           74 -------------------------------------------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLN-YP  109 (140)
Q Consensus        74 -------------------------------------------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~-~~  109 (140)
                                                                 ..+..++.++..|.||||.|+..|+.+++++|+. .|
T Consensus       164 ~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g  243 (285)
T d1wdya_         164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH  243 (285)
T ss_dssp             HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSS
T ss_pred             HHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCC
Confidence                                                       0112234567789999999999999999999996 58


Q ss_pred             CccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923          110 SVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       110 ~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      ++++.++.+|.| |||+|++.|+.|++++|+
T Consensus       244 ~din~~d~~G~T-pL~~A~~~~~~eiv~~Ll  273 (285)
T d1wdya_         244 IEINDTDSDGKT-ALLLAVELKLKKIAELLC  273 (285)
T ss_dssp             CCTTCCCTTSCC-HHHHHHHTTCHHHHHHHH
T ss_pred             CCCcCCCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence            999999999999 999999999999999985

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.7e-26  Score=143.93  Aligned_cols=134  Identities=21%  Similarity=0.219  Sum_probs=92.1

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC--------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP--------   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~--------   73 (140)
                      ++.++.+|..|+++.++.++...+... +..|..|+||||+|+..|+.+++++++..+.. ....+..+.++        
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~-~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~   81 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLA-TRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAG   81 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGG-GCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-SCCCCTTCCCHHHHHHHHT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcC-cCcCCCCCCHHHHHHHhhhhcccccccccccc-ccccccccccccccccccc
Confidence            456788999999999999988876553 56888999999999999999999999988876 34444445444        


Q ss_pred             ---------CchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhh
Q 038923           74 ---------TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFAN  138 (140)
Q Consensus        74 ---------~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~  138 (140)
                               ..+..++..+..|.||||+|+.+|+.+++++|++.|++++.++..|.| |||+|+..++.+++++
T Consensus        82 ~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t-~L~~a~~~~~~~~~~~  154 (223)
T d1uoha_          82 RDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEAT-AMHRAAAKGNLKMIHI  154 (223)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHH
T ss_pred             ccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCc-cchhhhhcCCcchhhh
Confidence                     122234556666777777777777777777777766666555544444 4444444444444433

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.3e-26  Score=151.27  Aligned_cols=120  Identities=16%  Similarity=0.141  Sum_probs=98.0

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcH-------HHHHHHHhhCCcccCCCCCCCCCC-
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHE-------ELALEILKLCPEMLAAPNDKFETP-   73 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~-------~~~~~Ll~~~~~~~~~~~~~~~~~-   73 (140)
                      .||||+||..|+.++++.|++.+.++  +..|..|+||||.||..++.       ++++++..    .....|..|.+| 
T Consensus       108 ~T~LH~Aa~~g~~~~v~~Ll~~gad~--~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~----~~~~~d~~g~t~l  181 (301)
T d1sw6a_         108 NTPLHWLTSIANLELVKHLVKHGSNR--LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP----CLILEDSMNRTIL  181 (301)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT--TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG----GGGEECTTCCCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCC--CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh----hhhhcccccCCHH
Confidence            37999999999999999999998877  67889999999999987752       34444432    234455666665 


Q ss_pred             -----------------------------------------------------------------CchhhhhccccCCCc
Q 038923           74 -----------------------------------------------------------------TDSWVVHMMNRNKES   88 (140)
Q Consensus        74 -----------------------------------------------------------------~~~~~~~~~~~~~~t   88 (140)
                                                                                       .....++.+|..|+|
T Consensus       182 h~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~T  261 (301)
T d1sw6a_         182 HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDT  261 (301)
T ss_dssp             HHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCC
T ss_pred             HHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCC
Confidence                                                                             001125778999999


Q ss_pred             HHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHH
Q 038923           89 ALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAA  128 (140)
Q Consensus        89 ~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~  128 (140)
                      |||+|++.|+.+++++|+++|++++..+..|.| ||++|+
T Consensus       262 pLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~T-pl~~A~  300 (301)
T d1sw6a_         262 CLNIAARLGNISIVDALLDYGADPFIANKSGLR-PVDFGA  300 (301)
T ss_dssp             HHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCC-GGGGTC
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC-HHHHcC
Confidence            999999999999999999999999999999999 999985

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.92  E-value=7.6e-27  Score=156.23  Aligned_cols=118  Identities=18%  Similarity=0.228  Sum_probs=96.4

Q ss_pred             HHHHHHHHcCCHHHHHH---HhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhh
Q 038923            3 ERLFETILKGDVPNFLN---LVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVV   79 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~---ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~   79 (140)
                      |+|+.|+..|+.+.++.   |++.+..+  +..+..|+||||+||+.||.+++++|++.|+++                 
T Consensus        92 t~L~~Aa~~g~~~~~~~~~~L~~~~~~i--n~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-----------------  152 (346)
T d2ajaa1          92 VICFVAAITGCSSALDTLCLLLTSDEIV--KVIQAENYQAFRLAAENGHLHVLNRLCELAPTE-----------------  152 (346)
T ss_dssp             HHHHHHHHHCCHHHHHHHTTC--CCSSC--C--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT-----------------
T ss_pred             cHHHHHHHhCCHHHHHHHHHHHhCCCcc--cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-----------------
Confidence            78999999999887765   56676665  667889999999999999999999999999875                 


Q ss_pred             hccc--cCCCcHHHHHHHcCCHHHHHHHHcCCCcccc---ccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           80 HMMN--RNKESALYVAYERGRHDVVKQLLNYPSVSLL---EMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        80 ~~~~--~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~---~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      +..+  ..|+||||+|+.+|+.+++++|++.|++...   .+.++.| |++.|+.+|+.+++++|+
T Consensus       153 ~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t-~l~~A~~~g~~~iv~~Ll  217 (346)
T d2ajaa1         153 IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYA-FRWAAVGRGHHNVINFLL  217 (346)
T ss_dssp             HHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHH-HHHHHSTTCCHHHHHHHT
T ss_pred             cccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcc-hhhHHhhcCHHHHHHHHH
Confidence            4444  4689999999999999999999999876533   3334445 888999999999999986

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=8.1e-25  Score=125.67  Aligned_cols=86  Identities=14%  Similarity=0.091  Sum_probs=81.8

Q ss_pred             CcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCcccccc
Q 038923           37 NTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEM  116 (140)
Q Consensus        37 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~  116 (140)
                      .|||++|++.|+.+++++|++.|.++                 +.++..|+||||+|+..|+.+++++|++.|++++.++
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~-----------------n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d   65 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV-----------------NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD   65 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC-----------------CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCS
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc-----------------ccccccccccccccccccccccccccccccceeeecc
Confidence            47999999999999999999999986                 6788999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHcCCHHHHhhhC
Q 038923          117 DDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       117 ~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      ..|+| |||+|+.+|+.+++++|+
T Consensus        66 ~~g~t-pLh~A~~~~~~~~v~~Ll   88 (118)
T d1myoa_          66 KHHIT-PLLSAVYEGHVSCVKLLL   88 (118)
T ss_dssp             SSCSC-HHHHHHTTTCCHHHHHHH
T ss_pred             ccccc-chhhhhhcCchhhhhhhh
Confidence            99999 999999999999999884

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.6e-24  Score=125.47  Aligned_cols=85  Identities=26%  Similarity=0.225  Sum_probs=81.1

Q ss_pred             cHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccC
Q 038923           38 TILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMD  117 (140)
Q Consensus        38 t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~  117 (140)
                      ++|+.||..|+.+++++|+++|+++                 +.++..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-----------------n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~   65 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-----------------SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS   65 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-----------------CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-----------------cccccccccccccccccccccccccccccccccccccc
Confidence            6799999999999999999999986                 78899999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHcCCHHHHhhhC
Q 038923          118 DGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       118 ~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      +|+| |||+|+.+|+.+++++|+
T Consensus        66 ~g~t-pLh~A~~~g~~~~v~~Ll   87 (130)
T d1ycsb1          66 DGWT-PLHCAASCNNVQVCKFLV   87 (130)
T ss_dssp             TCCC-HHHHHHHTTCHHHHHHHH
T ss_pred             cCcc-cccccchhhHHHHHHHHH
Confidence            9999 999999999999999984

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.90  E-value=2e-25  Score=149.25  Aligned_cols=59  Identities=14%  Similarity=0.152  Sum_probs=51.6

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCc
Q 038923            3 ERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPE   61 (140)
Q Consensus         3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~   61 (140)
                      ||||.||+.|+.+++++|++.+++......+..|+||||+|+..||.+++++|++.++.
T Consensus       128 taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~  186 (346)
T d2ajaa1         128 QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT  186 (346)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGG
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCc
Confidence            79999999999999999999988763333345689999999999999999999999875

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.90  E-value=5e-25  Score=142.48  Aligned_cols=117  Identities=15%  Similarity=0.205  Sum_probs=95.2

Q ss_pred             CHHHHHHHHcCCHHHHHHHh-hhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHH--------hhCCcccCCCCCCCCC
Q 038923            2 DERLFETILKGDVPNFLNLV-HEDEAIIKQTVPGSSNTILHLASRYEHEELALEIL--------KLCPEMLAAPNDKFET   72 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll-~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll--------~~~~~~~~~~~~~~~~   72 (140)
                      +||||.++..+..+.+..++ +.+...   ..+..|+||||+||.+|+.+++++|+        +.|+++          
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~---~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadv----------   67 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNI---IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV----------   67 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTT---CCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT----------
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCc---CCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCc----------
Confidence            57888666655555554444 443222   23356999999999999998887774        556765          


Q ss_pred             CCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923           73 PTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus        73 ~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                             +.+|..|.||||+|+..|+.+++++|++.|++++.++..|.| |+++|+..++.++++++
T Consensus        68 -------n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t-~l~~a~~~~~~~~~~~l  126 (277)
T d2fo1e1          68 -------NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERS-ALHQAAANRDFGMMVYM  126 (277)
T ss_dssp             -------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCC-HHHHHHHTTCHHHHHHH
T ss_pred             -------cccCCCCCeeeccccccccccccccccccccccccccccccc-cccchhhhcchhhhhhh
Confidence                   788999999999999999999999999999999999999999 99999999999888765

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=5.9e-23  Score=131.43  Aligned_cols=95  Identities=24%  Similarity=0.221  Sum_probs=86.1

Q ss_pred             cCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCC
Q 038923           31 TVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPS  110 (140)
Q Consensus        31 ~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~  110 (140)
                      ..+++|.||||+||++|+.+++++|++.+++..              .++.++..|.||||+|+..|+.+++++|++.|+
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~--------------~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga   69 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE--------------YLDLQNDLGQTALHLAAILGEASTVEKLYAAGA   69 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSG--------------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--------------cccCcCCCCCCccchHHhhcccccccccccccc
Confidence            357899999999999999999999999987521              125678899999999999999999999999999


Q ss_pred             ccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923          111 VSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       111 ~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      +++..+..|.| |||+|+..++.+++++|+
T Consensus        70 ~i~~~d~~g~t-pL~~A~~~~~~~~~~~Ll   98 (255)
T d1oy3d_          70 GVLVAERGGHT-ALHLACRVRAHTCACVLL   98 (255)
T ss_dssp             CSSCCCTTSCC-HHHHHTTTTCHHHHHHHS
T ss_pred             cccccccccch-hhhhhhccCchHHHHHHH
Confidence            99999999999 999999999999998874

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=3.5e-23  Score=130.59  Aligned_cols=117  Identities=15%  Similarity=0.074  Sum_probs=99.7

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhc
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHM   81 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   81 (140)
                      .++++.++..++.++++.|+..+...  ...+..|+||||+|+..|+.+++++|++.+...+                +.
T Consensus       106 ~~~l~~~~~~~~~~~~~~l~~~~~~~--~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~i----------------n~  167 (229)
T d1ixva_         106 VTCLHLAVGKKWFEVSQFLIENGASV--RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAV----------------NW  167 (229)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCS--CCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCS----------------CC
T ss_pred             ccccccccccchhhhhhhhhhhcccc--cccCCCCCCccchhhhcccccccccccccccccc----------------cc
Confidence            35788888899999999888887665  5577888999999999999999999998875332                67


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHc-CCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923           82 MNRNKESALYVAYERGRHDVVKQLLN-YPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus        82 ~~~~~~t~l~~A~~~~~~~~~~~L~~-~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      ++..|+||||+|+.+|+.+++++|++ .|++++.++..|+| |||+|+.   .+++++|+
T Consensus       168 ~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t-~l~~A~~---~~~~~~Ll  223 (229)
T d1ixva_         168 QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAK-AEDVALN---EQVKKFFL  223 (229)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCC-TGGGCSC---HHHHHHHH
T ss_pred             cccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCC-HHHHHhh---HHHHHHHH
Confidence            78899999999999999999999995 69999999999999 9999984   47777764

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.88  E-value=7.7e-23  Score=133.16  Aligned_cols=125  Identities=15%  Similarity=0.095  Sum_probs=103.1

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCccc------------------
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEML------------------   63 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~------------------   63 (140)
                      .||||.|+..|+.++++.|++.+...  ...+..+.+||++|+..++.++++.|++.+....                  
T Consensus        74 ~T~L~~A~~~g~~eiv~~Ll~~~~~~--~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~  151 (291)
T d1s70b_          74 LTALHQACIDDNVDMVKFLVENGANI--NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAM  151 (291)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHH
T ss_pred             CcHHHHHHhcCCceeeeeeccccccc--ccccccccccccccccccccchhhcccccCcccccccccCcccccccccccc
Confidence            37899999999999999999987665  4566778889999999888888888887765321                  


Q ss_pred             -----------------------------------------CCCCCCCCCC-----------------CchhhhhccccC
Q 038923           64 -----------------------------------------AAPNDKFETP-----------------TDSWVVHMMNRN   85 (140)
Q Consensus        64 -----------------------------------------~~~~~~~~~~-----------------~~~~~~~~~~~~   85 (140)
                                                               ...+..|.||                 ..+..++.++..
T Consensus       152 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~  231 (291)
T d1s70b_         152 EELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD  231 (291)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT
T ss_pred             chhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecccccccC
Confidence                                                     1234455665                 344456788999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCChHHHHHHH
Q 038923           86 KESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAAS  129 (140)
Q Consensus        86 ~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~  129 (140)
                      |+||||+|+..|+.+++++|+++|++++.+|..|+| |||+|++
T Consensus       232 g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~T-aL~~A~e  274 (291)
T d1s70b_         232 GWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQT-AFDVADE  274 (291)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-TTTSCCS
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCC-HHHHHHH
Confidence            999999999999999999999999999999999999 9999975

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.8e-22  Score=120.60  Aligned_cols=90  Identities=17%  Similarity=0.155  Sum_probs=82.1

Q ss_pred             CHHHHHHHHc---CCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhh
Q 038923            2 DERLFETILK---GDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWV   78 (140)
Q Consensus         2 ~~~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~   78 (140)
                      .||||.|++.   |..++++.|++.+.++  +..+..|+||||+|+..|+.+++++|+++|+++                
T Consensus        46 ~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi--n~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~----------------  107 (154)
T d1dcqa1          46 ETALHLAVRSVDRTSLHIVDFLVQNSGNL--DKQTGKGSTALHYCCLTDNAECLKLLLRGKASI----------------  107 (154)
T ss_dssp             CBHHHHHHHHCCTTTHHHHHHHHHHCSCT--TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT----------------
T ss_pred             CchHHHHHHhcCCCCHHHHHHHHHcCCCh--hhhhhhhccccccccccccccccccccccCccc----------------
Confidence            4799999985   6789999999998876  778999999999999999999999999999986                


Q ss_pred             hhccccCCCcHHHHHHHcCCHHHHHHHHcCCC
Q 038923           79 VHMMNRNKESALYVAYERGRHDVVKQLLNYPS  110 (140)
Q Consensus        79 ~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~  110 (140)
                       +.+|..|.||||+|+..|+.+++++|++.++
T Consensus       108 -~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1         108 -EIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             -TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             -cccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence             7889999999999999999999999997553

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.1e-22  Score=117.68  Aligned_cols=88  Identities=23%  Similarity=0.139  Sum_probs=79.7

Q ss_pred             CCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCcccc
Q 038923           35 SSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLL  114 (140)
Q Consensus        35 ~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~  114 (140)
                      .+.++||+|+.+|+.+++++|+++|.++                 +.++..|.||+|.|+ .|+.+++++|++.|++++.
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~-----------------n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~   63 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANP-----------------NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNC   63 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCT-----------------TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCC
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCcc-----------------ccccccccccccccc-ccccccccccccccccccc
Confidence            3568999999999999999999999986                 678899999999775 7999999999999999999


Q ss_pred             ccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923          115 EMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       115 ~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      ++..+.+||||+|++.|+.+++++|+
T Consensus        64 ~~~~~~~~~L~~A~~~g~~~~v~~Ll   89 (125)
T d1bi7b_          64 ADPATLTRPVHDAAREGFLDTLVVLH   89 (125)
T ss_dssp             CCTTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             cccccccccccccccccccccccccc
Confidence            99887755999999999999999884

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.6e-21  Score=131.81  Aligned_cols=86  Identities=29%  Similarity=0.299  Sum_probs=81.6

Q ss_pred             CcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCcccccc
Q 038923           37 NTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEM  116 (140)
Q Consensus        37 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~  116 (140)
                      .||||+||..|+.++|++|++.|+++                 +..+..|.||||+|+..|+.+++++|++.|++++.++
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~i-----------------n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~   63 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASP-----------------NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA   63 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCS-----------------CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCC
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCC-----------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCC
Confidence            49999999999999999999999986                 6788999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHcCCHHHHhhhC
Q 038923          117 DDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       117 ~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      ..|+| |||+|+..|+.+++++|+
T Consensus        64 ~~g~t-~L~~A~~~g~~~~~~~Ll   86 (408)
T d1n11a_          64 KDDQT-PLHCAARIGHTNMVKLLL   86 (408)
T ss_dssp             TTSCC-HHHHHHHHTCHHHHHHHH
T ss_pred             CCCCC-HHHHHHHcCCHHHHHHHH
Confidence            99999 999999999999998763

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=5.2e-20  Score=120.66  Aligned_cols=106  Identities=15%  Similarity=0.090  Sum_probs=82.6

Q ss_pred             CCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCc---------------------hhhhhccccCCCcHHH
Q 038923           33 PGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTD---------------------SWVVHMMNRNKESALY   91 (140)
Q Consensus        33 ~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~t~l~   91 (140)
                      |..|+||||+||..|+.+++++|++.|++ ++.+|..|.||..                     ...+...+..|+||||
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh  182 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILH  182 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHH
Confidence            78899999999999999999999999998 6788999999910                     1124556678999999


Q ss_pred             HHHHcCC----HH--------HHHHHHcCCCc-------------------------------------cccccCCCCCh
Q 038923           92 VAYERGR----HD--------VVKQLLNYPSV-------------------------------------SLLEMDDGLTT  122 (140)
Q Consensus        92 ~A~~~~~----~~--------~~~~L~~~~~~-------------------------------------~~~~~~~~~t~  122 (140)
                      .++..+.    ..        ++.++...+..                                     ++.+|..|+| 
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~T-  261 (301)
T d1sw6a_         183 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDT-  261 (301)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCC-
T ss_pred             HHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCC-
Confidence            8876443    22        23344433322                                     4667889999 


Q ss_pred             HHHHHHHcCCHHHHhhhC
Q 038923          123 SLHVAASAGHLGTFANLV  140 (140)
Q Consensus       123 ~l~~A~~~g~~~~~~~Ll  140 (140)
                      |||+|++.|+.+++++|+
T Consensus       262 pLh~A~~~g~~~iv~~Ll  279 (301)
T d1sw6a_         262 CLNIAARLGNISIVDALL  279 (301)
T ss_dssp             HHHHHHHHCCHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHH
Confidence            999999999999999985

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.79  E-value=3.5e-19  Score=110.57  Aligned_cols=85  Identities=20%  Similarity=0.150  Sum_probs=78.8

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhchHHHhhcCCCCCCcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCCCchhhhhc
Q 038923            2 DERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHM   81 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   81 (140)
                      .|+|+.++..|..+.++.+++.....  +..+..|.||||+|+..|+.+++++|++.|+++                 +.
T Consensus       124 ~t~l~~~~~~~~~~~~~~l~~~~~~~--~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~-----------------n~  184 (209)
T d1ot8a_         124 KTALHWAAAVNNTEAVNILLMHHANR--DAQDDKDETPLFLAAREGSYEASKALLDNFANR-----------------EI  184 (209)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-----------------TC
T ss_pred             CCcchhhcccCcceeeeeeccccccc--cccccccccccchhccccHHHHHHHHHHCCCCC-----------------CC
Confidence            46899999999999999999997766  678889999999999999999999999999986                 68


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHH
Q 038923           82 MNRNKESALYVAYERGRHDVVKQL  105 (140)
Q Consensus        82 ~~~~~~t~l~~A~~~~~~~~~~~L  105 (140)
                      +|..|+||||+|+++|+.++|++|
T Consensus       185 ~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         185 TDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHhhc
Confidence            899999999999999999999987

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=7.5e-19  Score=104.29  Aligned_cols=101  Identities=16%  Similarity=0.103  Sum_probs=86.5

Q ss_pred             CcHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC-----------------CchhhhhccccCCCcHHHHHHHcCCH
Q 038923           37 NTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP-----------------TDSWVVHMMNRNKESALYVAYERGRH   99 (140)
Q Consensus        37 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~t~l~~A~~~~~~   99 (140)
                      .||||.||+.|+.+++++|+++|++. . .|..|.||                 .........+..+.++++.++...+.
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~-~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCc-c-cccCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            48999999999999999999999974 3 68889999                 11222233445667899999999999


Q ss_pred             HHHHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923          100 DVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       100 ~~~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      ++++++...+++.+.++..|.| |||+|+..|+.+++++|+
T Consensus        81 ~~~~~l~~~~~~~~~~~~~g~T-~L~~A~~~g~~~iv~~ll  120 (153)
T d1awcb_          81 NIVEVLLKHGADVNAKDMLKMT-ALHWATEHNHQEVVELLI  120 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHH
T ss_pred             eeeecccccCCccccccccCch-HHHhhhhcchhheeeecc
Confidence            9999999999999999999999 999999999999999874

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.2e-18  Score=107.07  Aligned_cols=87  Identities=18%  Similarity=0.174  Sum_probs=78.8

Q ss_pred             CCCcHHHHHHhhCcHHHHHHHHh----hCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCC
Q 038923           35 SSNTILHLASRYEHEELALEILK----LCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPS  110 (140)
Q Consensus        35 ~g~t~l~~A~~~g~~~~~~~Ll~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~  110 (140)
                      +|+||||+||.+|+.+++++|++    .|.++                 +.+|..|+||||+|+..|+.+++++|++.|+
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i-----------------n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga   64 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-----------------DIYNNLRQTPLHLAVITTLPSVVRLLVTAGA   64 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-----------------CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----------------CccCCCCCccceehhcccccccccccccccc
Confidence            69999999999999999999886    55664                 6788999999999999999999999999999


Q ss_pred             ccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923          111 VSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus       111 ~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                      +.+.....+.+ +++.|...++.++++.+
T Consensus        65 ~~~~~~~~~~~-~~~~a~~~~~~~~~~~~   92 (228)
T d1k1aa_          65 SPMALDRHGQT-AAHLACEHRSPTCLRAL   92 (228)
T ss_dssp             CTTCCCTTSCC-HHHHHHHTTCHHHHHHH
T ss_pred             ccccccccccc-ccccccccccccchhhh
Confidence            99999989999 99999999998877653

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.4e-18  Score=103.73  Aligned_cols=102  Identities=18%  Similarity=0.072  Sum_probs=89.9

Q ss_pred             cHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC----------------CchhhhhccccCCCcHHHHHHHcCCHHH
Q 038923           38 TILHLASRYEHEELALEILKLCPEMLAAPNDKFETP----------------TDSWVVHMMNRNKESALYVAYERGRHDV  101 (140)
Q Consensus        38 t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~t~l~~A~~~~~~~~  101 (140)
                      ..|+.||..|+.++++.|++.+...++..|..|.||                .....++..+..+.+|++.++..++.++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~   83 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDT   83 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccccccccccccccccccccccccccccccccccccccccc
Confidence            459999999999999999987654478899999999                2233456677889999999999999999


Q ss_pred             HHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhhC
Q 038923          102 VKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV  140 (140)
Q Consensus       102 ~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~Ll  140 (140)
                      ++++++.|++++.++..|.| |||+|++.|+.+++++|+
T Consensus        84 ~~~~l~~~~~~n~~~~~~~t-~L~~A~~~~~~~i~~~L~  121 (156)
T d1bd8a_          84 LKVLVEHGADVNVPDGTGAL-PIHLAVQEGHTAVVSFLA  121 (156)
T ss_dssp             HHHHHHTTCCSCCCCTTSCC-HHHHHHHHTCHHHHHHHH
T ss_pred             cccccccccccccccCCCCe-eecccccccccccccccc
Confidence            99999999999999999999 999999999999999873

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=9.3e-20  Score=114.45  Aligned_cols=87  Identities=23%  Similarity=0.253  Sum_probs=71.7

Q ss_pred             CCCcHHHHHHhhCcHHH----HHHHHhhCCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCC
Q 038923           35 SSNTILHLASRYEHEEL----ALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPS  110 (140)
Q Consensus        35 ~g~t~l~~A~~~g~~~~----~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~  110 (140)
                      +|.||||+|+.+|+.++    ++++...+.++                 +.++..|+||||+|+..|+.+++++|++.|+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~i-----------------n~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~   63 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-----------------NFQNNLQQTPLHLAVITNQPEIAEALLGAGC   63 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCC-----------------CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCC
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCc-----------------ccCCCCCCccccccccccccccccccccccc
Confidence            58999999999999644    55555566664                 6788899999999999999999999999999


Q ss_pred             ccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923          111 VSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus       111 ~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                      +++..+..|.| ||+.|+..++.++++.|
T Consensus        64 d~~~~d~~g~t-~l~~~~~~~~~~~~~~l   91 (221)
T d1iknd_          64 DPELRDFRGNT-PLHLACEQGCLASVGVL   91 (221)
T ss_dssp             CSCCCCTTCCC-HHHHHHHHTCHHHHHHH
T ss_pred             ccccccccccc-ccccccccccccccchh
Confidence            99999988999 99999999999888765

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.6e-18  Score=110.94  Aligned_cols=99  Identities=19%  Similarity=0.150  Sum_probs=78.2

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhc-hHH-----------------------------H------hhcCCCCCCcHHHHHHh
Q 038923            2 DERLFETILKGDVPNFLNLVHED-EAI-----------------------------I------KQTVPGSSNTILHLASR   45 (140)
Q Consensus         2 ~~~l~~a~~~g~~~~~~~ll~~~-~~~-----------------------------~------~~~~~~~g~t~l~~A~~   45 (140)
                      .+|||.|++.|+.++++.|++.. .++                             +      .+..+..|.||||+|+.
T Consensus       149 ~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~  228 (285)
T d1wdya_         149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE  228 (285)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhh
Confidence            46899999999999999998642 111                             0      01245567777888777


Q ss_pred             hCcHHHHHHHHhh-CCcccCCCCCCCCCCCchhhhhccccCCCcHHHHHHHcCCHHHHHHHHcCCCccccccC
Q 038923           46 YEHEELALEILKL-CPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMD  117 (140)
Q Consensus        46 ~g~~~~~~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~  117 (140)
                      .|+.+++++|++. +.++                 +.+|..|.||||+|+..|+.+++++|++.|++++.+|.
T Consensus       229 ~~~~~~v~~lL~~~g~di-----------------n~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         229 KKHLGLVQRLLEQEHIEI-----------------NDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             TTCHHHHHHHHHSSSCCT-----------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             cCcHHHHHHHHHcCCCCC-----------------cCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            7777777777764 4454                 78899999999999999999999999999999998873

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.4e-18  Score=102.37  Aligned_cols=100  Identities=23%  Similarity=0.194  Sum_probs=79.2

Q ss_pred             cHHHHHHhhCcHHHHHHHHhhCCcccCCCCCCCCCC----------------CchhhhhccccCCCcHHHHHHHcCCHHH
Q 038923           38 TILHLASRYEHEELALEILKLCPEMLAAPNDKFETP----------------TDSWVVHMMNRNKESALYVAYERGRHDV  101 (140)
Q Consensus        38 t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~t~l~~A~~~~~~~~  101 (140)
                      ++||+||..|+.+++++|+++|++ ++..|..|.||                ..+..++..+..+.++++.++..++.+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d-~n~~d~~g~TpL~~A~~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCC-TTCCCTTSCCHHHHCCSSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-cCccCCcccccccccccccccccccccccccccccccccCccccccccccccccc
Confidence            799999999999999999999998 56777777777                1223345566677778888888888888


Q ss_pred             HHHHHcCCCccccccCCCCChHHHHHHHcCCHHHHhhh
Q 038923          102 VKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANL  139 (140)
Q Consensus       102 ~~~L~~~~~~~~~~~~~~~t~~l~~A~~~g~~~~~~~L  139 (140)
                      ++.|++.+.+++..+..|.+ |++.|+..++.+++++|
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~-~l~~a~~~~~~~~~~~L  118 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNEGNL-PLHLAAKEGHLRVVEFL  118 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHH
T ss_pred             cccccccccccccccccccc-ccccccccccccccccc
Confidence            88877777777777777777 88888888888877765