Citrus Sinensis ID: 038926

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150---
Protein Sequence
MEENMLASVIVTDRELALMKVIQKIFPSATTFLCRWHISRNVLANCKNLFETNEIWQTFISSWNLLVLSASEEEFAQRLKGMETDFSKYPIVLTYIRNVWLDKCKEKFVSAWTNSVMHFRNVESSHSKLKKQLRTSRGTFESSWTKIHTFLEF
Secondary Structure (PSIPRED)
ccccccccEEEEEccHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHccHHccccccHHHHHHHHHHcccccccEEEEEEEcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEcHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MEENMLASVIVTDRELALMKVIQKIFPSATTFLCRWHISRNVLANCKNLFETNEIWQTFISSWNLLVLSASEEEFAQRLKGmetdfskyPIVLTYIRNVWLDKCKEKFVSAWTNSVMHFRNVESSHSKLKKQLrtsrgtfessWTKIHTFLEF
Flexible Loop (DISEMBL)
MEENMLASVIVTDRELALMKVIQKIFPSATTFLCRWHISRNVLANCKNLFETNEIWQTFISSWNLLVLSASEEEFAQRLKGmetdfskypIVLTYIRNVWLDKCKEKFVSAWTNSVMHfrnvesshsklkkqlrtsrgtfesswtkihtflef
Low Complexity Region (SEG)
MEENMLASVIVTDRELALMKVIQKIFPSATTFLCRWHISRNVLANCKNLFETNEIWQTFISSWNLLVLSASEEEFAQRLKGMETDFSKYPIVLTYIRNVWLDKCKEKFVSAWTNSVMHFRNVESSHSKLKKQLRTSRGTFESSWTKIHTFLEF
Disordered region (IsUnstruct)
*****LASVIVTDRELALMKVIQKIFPSATTFLCRWHISRNVLANCKNLFETNEIWQTFISSWNLLVLSASEEEFAQRLKGMETDFSKYPIVLTYIRNVWLDKCKEKFVSAWTNSVMHFRN*************************I******
Disordered Region (DISOPRED)
****MLASVIVTDRELALMKVIQKIFPSATTFLCRWHISRNVLANCKNLFETNEIWQTFISSWNLLVLSASEEEFAQRLKGMETDFSKYPIVLTYIRNVWLDKCKEKFVSAWTNSVMHFRNVESSHSKLKKQLRTSRGTFESSWTKIHTFLEF
Disordered Region (DISEMBL)
MEENMLASVIVTDRELALMKVIQKIFPSATTFLCRWHISRNVLANCKNLFETNEIWQTFISSWNLLVLSASEEEFAQRLKGMETDFSKYPIVLTYIRNVWLDKCKEKFVSAWTNSVMHFRNV*****************FESSWTKIHTFLEF
Disordered Region (DISPRO)
***NMLASVIVTDRELALMKVIQKIFPSATTFLCRWHISRNVLANCKNLFETNEIWQTFISSWNLLVLSASEEEFAQRLKGMETDFSKYPIVLTYIRNVWLDKCKEKFVSAWTNSVMHFRNVESSHSKLKKQLRTSRGTFESSWTKIHTFLEF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEENMLASVIVTDRELALMKVIQKIFPSATTFLCRWHISRNVLANCKNLFETNEIWQTFISSWNLLVLSASEEEFAQRLKGMETDFSKYPIVLTYIRNVWLDKCKEKFVSAWTNSVMHFRNVESSHSKLKKQLRTSRGTFESSWTKIHTFLEF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
297744547	701	unnamed protein product [Vitis vinifera]	1.0	0.218	0.5	8e-40
147776975	773	hypothetical protein VITISV_001036 [Viti	1.0	0.197	0.487	4e-38
325183630	194	Pc21g00130 putative [Albugo laibachii Nc	0.908	0.716	0.448	5e-26
356499731	878	PREDICTED: uncharacterized protein LOC10	0.986	0.171	0.384	6e-25
356536595	877	PREDICTED: uncharacterized protein LOC10	0.980	0.171	0.380	7e-25
356529783	1403	PREDICTED: uncharacterized protein LOC10	1.0	0.109	0.360	1e-24
356536993	426	PREDICTED: protein FAR1-RELATED SEQUENCE	0.777	0.279	0.428	8e-23
116191305	231	hypothetical protein CHGG_05370 [Chaetom	0.869	0.575	0.418	3e-22
116206810	743	hypothetical protein CHGG_02698 [Chaetom	0.869	0.179	0.418	6e-22
325191120	669	Pc21g00130 putative [Albugo laibachii Nc	0.745	0.170	0.469	6e-22

>gi|297744547|emb|CBI37809.3| unnamed protein product [Vitis vinifera]

 Score =  168 bits (425), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 79/158 (50%), Positives = 106/158 (67%), Gaps = 5/158 (3%)

Query: 1   MEENMLASVIVTDRELALMKVIQKIFPSATTFLCRWHISRNVLANCKNLFETNEIWQTFI 60
           +++ ML  V++TDRE +LM  +QK+FP A+  LCRWHIS N+LANCK  FE+      FI
Sbjct: 156 IDDAMLPRVVMTDREPSLMNALQKVFPMASNLLCRWHISTNILANCKIFFESKSRLDAFI 215

Query: 61  SSWNLLVLSASEEEFAQRLKGMETDFSKYPIVLTYIRNVWLDKCKEKFVSAWTNSVMHFR 120
           S WN++VL+ +E+E+A RL  +E+ F +Y   + Y +  WL   KEKFV+ WTN VMHF 
Sbjct: 216 SMWNIVVLAETEDEYANRLNQLESHFHRYIQAINYCKEQWLLPYKEKFVAVWTNKVMHFG 275

Query: 121 N-----VESSHSKLKKQLRTSRGTFESSWTKIHTFLEF 153
           N      ES+ +KLK+QL  SRG  ESSW KIH+ LE 
Sbjct: 276 NTTVNRAESTRAKLKRQLGLSRGDIESSWPKIHSLLEL 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147776975|emb|CAN70078.1| hypothetical protein VITISV_001036 [Vitis vinifera]

 Score =  162 bits (410), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 77/158 (48%), Positives = 103/158 (65%), Gaps = 5/158 (3%)

Query: 1   MEENMLASVIVTDRELALMKVIQKIFPSATTFLCRWHISRNVLANCKNLFETNEIWQTFI 60
           ++  ML  V++TDRE +LM  +QK+FP A+  LCRWHIS N+LANCK  FE+      FI
Sbjct: 267 IDXAMLPRVVMTDREPSLMNALQKVFPMASNLLCRWHISTNILANCKIFFESKSRLDAFI 326

Query: 61  SSWNLLVLSASEEEFAQRLKGMETDFSKYPIVLTYIRNVWLDKCKEKFVSAWTNSVMHFR 120
           S WNJ+VL+ + +E+A RL  +E+ F +Y   + Y +  WL   KEKFV+ WTN VMHF 
Sbjct: 327 SMWNJVVLAETXDEYANRLNQLESHFHRYIQAINYCKEQWLLPYKEKFVAVWTNKVMHFG 386

Query: 121 N-----VESSHSKLKKQLRTSRGTFESSWTKIHTFLEF 153
           N      ES+ +KLK+QL  S G  ESSW KIH+ LE 
Sbjct: 387 NTTVNRAESTRAKLKRQLGLSXGDIESSWPKIHSLLEL 424

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|325183630|emb|CCA18090.1| Pc21g00130 putative [Albugo laibachii Nc14]

 Score =  122 bits (306), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 65/145 (44%), Positives = 90/145 (62%), Gaps = 6/145 (4%)

Query: 8   SVIVTDRELALMKVIQKIFPSATTFLCRWHISRNVLANCKNLFETNEIWQTFISSWNLLV 67
            VIVTDRELALM  I K+F S++  LC WHI++N+LA CK  FET+E W  F+  W +LV
Sbjct: 41  GVIVTDRELALMAAIDKVFSSSSHLLCIWHINKNILAKCKRQFETSEEWTVFLQQWCILV 100

Query: 68  LSASEEEFAQRLKGMETDFSKYPIVLTYIRNVWLDKCKEKFVSAWTNSVMHFRN-----V 122
            + +E E+ ++ K +   F   P VL Y+ N WL   KE+FV+AWT+   HF N     V
Sbjct: 101 AANTELEYEKQWKELSDSFKTKPKVLEYLANTWLIY-KERFVNAWTSKYRHFGNKATSRV 159

Query: 123 ESSHSKLKKQLRTSRGTFESSWTKI 147
           E +H+ +KK L+ S G   S  +K+
Sbjct: 160 EGAHAYIKKFLQVSTGDLLSVLSKL 184

Source: Albugo laibachii Nc14

Species: Albugo laibachii

Genus: Albugo

Family: Albuginaceae

Order: Albuginales

Superkingdom: Eukaryota

>gi|356499731|ref|XP_003518690.1| PREDICTED: uncharacterized protein LOC100805365 [Glycine max]

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 94/156 (60%), Gaps = 5/156 (3%)

Query: 1   MEENMLASVIVTDRELALMKVIQKIFPSATTFLCRWHISRNVLANCKNLFETNEIWQTFI 60
           ++E+ +  VIVT  ++ALM  +Q +FPS++  LCR+HI++NV A CK++  + E     +
Sbjct: 311 VKEDDMPQVIVTVGDIALMSAVQVVFPSSSNLLCRFHINQNVKAKCKSIVHSKEKQDMVM 370

Query: 61  SSWNLLVLSASEEEFAQRLKGMETDFSKYPIVLTYIRNVWLDKCKEKFVSAWTNSVMHFR 120
            +W+++V S +E E+ QRL   E     +PI   Y++N WL   KEKFV+AWTN VMH  
Sbjct: 371 DAWDVIVNSPNEGEYMQRLAFFENVCLDFPIFGDYVKNTWLIPHKEKFVTAWTNRVMHLG 430

Query: 121 N-----VESSHSKLKKQLRTSRGTFESSWTKIHTFL 151
           N     VE++H +LK  L+ S+    S W  +   +
Sbjct: 431 NTATNRVEATHWRLKTLLQDSKEDMCSYWDAMKNMI 466

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536595|ref|XP_003536822.1| PREDICTED: uncharacterized protein LOC100800409 [Glycine max]

 Score =  118 bits (296), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 94/155 (60%), Gaps = 5/155 (3%)

Query: 2   EENMLASVIVTDRELALMKVIQKIFPSATTFLCRWHISRNVLANCKNLFETNEIWQTFIS 61
           +++ +  VIVT  ++ALM  +Q +FPS++  LCR+HI++NV A CK++    E  +  + 
Sbjct: 309 KDDDMPQVIVTVGDIALMSAVQVVFPSSSNLLCRFHINQNVKAKCKSIVHLKEKQELMMD 368

Query: 62  SWNLLVLSASEEEFAQRLKGMETDFSKYPIVLTYIRNVWLDKCKEKFVSAWTNSVMHFRN 121
           +W+++V S +E E+ QRL   E     +PI+  Y++N WL   KEKFV+AWTN VMH  N
Sbjct: 369 AWDVVVNSPNEGEYMQRLAFFENVCLDFPILCDYVKNTWLIPHKEKFVTAWTNQVMHLGN 428

Query: 122 -----VESSHSKLKKQLRTSRGTFESSWTKIHTFL 151
                VE++H +LK  L+ S+    S W  +   +
Sbjct: 429 TATNRVEATHWRLKTLLQDSKEDMCSYWDAMKNII 463

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529783|ref|XP_003533467.1| PREDICTED: uncharacterized protein LOC100782358 [Glycine max]

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 93/158 (58%), Gaps = 5/158 (3%)

Query: 1    MEENMLASVIVTDRELALMKVIQKIFPSATTFLCRWHISRNVLANCKNLFETNEIWQTFI 60
            +++N +  VI+T R++ALM  +Q +FPS++  LCR+HIS+NV A CK +    E +   +
Sbjct: 1076 VKDNEMPPVIITVRDIALMDAVQVVFPSSSNLLCRFHISKNVKAKCKLIVHPKERYDLVM 1135

Query: 61   SSWNLLVLSASEEEFAQRLKGMETDFSKYPIVLTYIRNVWLDKCKEKFVSAWTNSVMHFR 120
             +W+ ++ S +E E+ QRL  +E   S +P    Y++N WL   KEKFV AW + VMH  
Sbjct: 1136 DAWDSVMNSPNEGEYMQRLTLLEKVCSDFPTFGDYVKNTWLIPHKEKFVMAWVDRVMHLG 1195

Query: 121  NV-----ESSHSKLKKQLRTSRGTFESSWTKIHTFLEF 153
            N      E++H +L+  L+ S G   S W  ++  ++ 
Sbjct: 1196 NTTIDRFETAHWRLENLLQDSGGDMCSCWDAVNNMIKL 1233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536993|ref|XP_003537016.1| PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max]

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 72/119 (60%)

Query: 1   MEENMLASVIVTDRELALMKVIQKIFPSATTFLCRWHISRNVLANCKNLFETNEIWQTFI 60
           +  + L  VIVTDR+LALM V++ +FP  T  LCR+HI +NV A CK+L      W   +
Sbjct: 300 LRNDHLHVVIVTDRDLALMNVVKVVFPECTNLLCRFHIDKNVKAKCKSLIGQKNAWDYVM 359

Query: 61  SSWNLLVLSASEEEFAQRLKGMETDFSKYPIVLTYIRNVWLDKCKEKFVSAWTNSVMHF 119
            SW  LV   SE+EF + L+  +   S +P+ + Y+   W+   KEKF++AWTN VMH 
Sbjct: 360 DSWGNLVDCPSEQEFPEHLQRFQVACSPWPMFVDYVCETWIVPHKEKFITAWTNKVMHL 418

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116191305|ref|XP_001221465.1| hypothetical protein CHGG_05370 [Chaetomium globosum CBS 148.51] gi|88181283|gb|EAQ88751.1| hypothetical protein CHGG_05370 [Chaetomium globosum CBS 148.51]

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/141 (41%), Positives = 81/141 (57%), Gaps = 8/141 (5%)

Query: 6   LASVIVTDRELALMKVIQKIFPSATTFLCRWHISRNVLANCKNLFETNEIWQTFISSWNL 65
           L SVI+TDR LA M     +FPSA T +C WH ++ VLA C+  F   E W+ F  SW+ 
Sbjct: 88  LPSVILTDRCLAAMNAASALFPSAATLICIWHANKAVLARCQPAFPEAEKWKEFYDSWHS 147

Query: 66  LVLSASEEEFAQRLKGMETDFS-KYPIVLTYIRNVWLDKCKEKFVSAWTNSVMHFRN--- 121
           ++ S +EEE+A RL   +  ++ ++P  + YI+  WL   KEK V AW + + HF N   
Sbjct: 148 IISSPTEEEYANRLAQFQQKYALEHPNEVGYIKTTWLIPFKEKLVRAWVDQLTHFGNTAT 207

Query: 122 --VESSHSKLKKQLRTSRGTF 140
             VE  H+ LK  LR  R TF
Sbjct: 208 SRVEGIHALLKSYLR--RSTF 226

Source: Chaetomium globosum CBS 148.51

Species: Chaetomium globosum

Genus: Chaetomium

Family: Chaetomiaceae

Order: Sordariales

Class: Sordariomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|116206810|ref|XP_001229214.1| hypothetical protein CHGG_02698 [Chaetomium globosum CBS 148.51] gi|88183295|gb|EAQ90763.1| hypothetical protein CHGG_02698 [Chaetomium globosum CBS 148.51]

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 59/141 (41%), Positives = 80/141 (56%), Gaps = 8/141 (5%)

Query: 6   LASVIVTDRELALMKVIQKIFPSATTFLCRWHISRNVLANCKNLFETNEIWQTFISSWNL 65
           L SVI+TDR LA M     +FPSA T +C WH ++ VLA C+  F   E W+ F  SW+ 
Sbjct: 600 LPSVILTDRCLAAMNAASALFPSAATLICIWHANKAVLARCQPAFPEAEKWKEFYDSWHS 659

Query: 66  LVLSASEEEFAQRLKGMETDFS-KYPIVLTYIRNVWLDKCKEKFVSAWTNSVMHFRN--- 121
           ++ S +EEE+A RL   +  ++ ++P  + YI+  WL   KEK V AW +   HF N   
Sbjct: 660 IISSPTEEEYANRLAQFQQKYAVEHPNQVGYIKTTWLIPFKEKLVRAWVDQSTHFGNTAT 719

Query: 122 --VESSHSKLKKQLRTSRGTF 140
             VE  H+ LK  LR  R TF
Sbjct: 720 SRVEGIHALLKSYLR--RSTF 738

Source: Chaetomium globosum CBS 148.51

Species: Chaetomium globosum

Genus: Chaetomium

Family: Chaetomiaceae

Order: Sordariales

Class: Sordariomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|325191120|emb|CCA25904.1| Pc21g00130 putative [Albugo laibachii Nc14]

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 54/115 (46%), Positives = 74/115 (64%), Gaps = 1/115 (0%)

Query: 7   ASVIVTDRELALMKVIQKIFPSATTFLCRWHISRNVLANCKNLFETNEIWQTFISSWNLL 66
             VIVTDRELALM  I K+F S++  LC WHI++N+LA CK  FET+E W  F+  W + 
Sbjct: 548 PGVIVTDRELALMAAIDKLFSSSSHLLCVWHINKNILAKCKRQFETSEEWTVFLQQWCIW 607

Query: 67  VLSASEEEFAQRLKGMETDFSKYPIVLTYIRNVWLDKCKEKFVSAWTNSVMHFRN 121
           V + +E E+ ++ K +   F   P VL Y+ N WL   KE+FV+AWT+  +HF N
Sbjct: 608 VAANTELEYEKQWKVLSDSFKTKPEVLEYLANTWLIY-KERFVNAWTSKHLHFGN 661

Source: Albugo laibachii Nc14

Species: Albugo laibachii

Genus: Albugo

Family: Albuginaceae

Order: Albuginales

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
CGD|CAL0004344	568	orf19.4703 [Candida albicans (	0.869	0.234	0.255	4.5e-09
UNIPROTKB|Q5AME3	568	CaO19.4703 "Putative uncharact	0.869	0.234	0.255	4.5e-09

CGD|CAL0004344 orf19.4703 [Candida albicans (taxid:5476)]

 Score = 144 (55.7 bits), Expect = 4.5e-09, P = 4.5e-09
 Identities = 36/141 (25%), Positives = 69/141 (48%)

Query:    10 IVTDRELALMKVIQKIFPSATTFLCRWHISRNVLANCKNLFETNEIWQTFISSWNLLVLS 69
             ++ D  ++ +  I+ +FP ++  +C+WHI RNV    +++F   E     ++    L  +
Sbjct:   109 VMIDCSMSELSAIKTVFPESSVSICKWHILRNVRTEARSIFNDKESQDYAVAKITALFDN 168

Query:    70 ASEEEFAQRLKGMETDFSKYPIVLTYIRNVWLDKCKEKFVSAWTNSVMHFRNVESSHSK- 128
             ++++E AQ++   +  F  YP  L Y +      C E  + +W N+     N E+S +  
Sbjct:   169 STKDEIAQKIHEFKEQFKDYPKWLNYFKY-----C-ENLLRSWMNNAKVSLNQENSTNNC 222

Query:   129 LKKQLRTSRGTFESSWTKIHT 149
             ++   RT +  F  S  K HT
Sbjct:   223 IESYHRTIKIKFIKSIRK-HT 242

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5AME3 CaO19.4703 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 144 (55.7 bits), Expect = 4.5e-09, P = 4.5e-09
 Identities = 36/141 (25%), Positives = 69/141 (48%)

Query:    10 IVTDRELALMKVIQKIFPSATTFLCRWHISRNVLANCKNLFETNEIWQTFISSWNLLVLS 69
             ++ D  ++ +  I+ +FP ++  +C+WHI RNV    +++F   E     ++    L  +
Sbjct:   109 VMIDCSMSELSAIKTVFPESSVSICKWHILRNVRTEARSIFNDKESQDYAVAKITALFDN 168

Query:    70 ASEEEFAQRLKGMETDFSKYPIVLTYIRNVWLDKCKEKFVSAWTNSVMHFRNVESSHSK- 128
             ++++E AQ++   +  F  YP  L Y +      C E  + +W N+     N E+S +  
Sbjct:   169 STKDEIAQKIHEFKEQFKDYPKWLNYFKY-----C-ENLLRSWMNNAKVSLNQENSTNNC 222

Query:   129 LKKQLRTSRGTFESSWTKIHT 149
             ++   RT +  F  S  K HT
Sbjct:   223 IESYHRTIKIKFIKSIRK-HT 242


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.130   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      153       153   0.00081  105 3  11 22  0.42    31
                                                     30  0.41    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  166 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.46u 0.10s 15.56t   Elapsed:  00:00:01
  Total cpu time:  15.46u 0.10s 15.56t   Elapsed:  00:00:01
  Start:  Fri May 10 01:15:25 2013   End:  Fri May 10 01:15:26 2013

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	153
pfam10551	88	pfam10551, MULE, MULE transposase domain	8e-08
PLN03097	846	PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTY	3e-05

>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain

 Score = 47.0 bits (112), Expect = 8e-08
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 9  VIVTDRELALMKVIQKIFPSATTFLCRWHISRNVL 43
           I++D +  L K I+++FP+A   LC WHI RN+ 
Sbjct: 54 TIISDGDKGLKKAIKEVFPNARHRLCLWHILRNLK 88

This domain was identified by Babu and colleagues. Length = 88

>gnl|CDD|178645 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

 Score = 42.3 bits (99), Expect = 3e-05
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 9   VIVTDRELALMKVIQKIFPSATTFLCRWHISRNVLANCKNLFETNEIWQTFISSWNLLVL 68
           VI+TD++ A+  VI ++FP+A      WHI   V  N   + + +E    F++ +   + 
Sbjct: 350 VIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIKQHE---NFMAKFEKCIY 406

Query: 69  -SASEEEFAQR 78
            S +EEEF +R
Sbjct: 407 RSWTEEEFGKR 417

Length = 846

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	153
PLN03097	846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	99.95
PF00872	381	Transposase_mut: Transposase, Mutator family; Inte	99.61
PF10551	93	MULE: MULE transposase domain; InterPro: IPR018289	99.38
COG3328	379	Transposase and inactivated derivatives [DNA repli	98.91
PF01610	249	DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut	97.49
PF06782	470	UPF0236: Uncharacterised protein family (UPF0236);	96.71
PF03461	101	TRCF: TRCF domain; InterPro: IPR005118 This domain	84.56
PF13610	140	DDE_Tnp_IS240: DDE domain	84.55

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

Probab=99.95  E-value=1.3e-27  Score=207.09  Aligned_cols=142  Identities=21%  Similarity=0.359  Sum_probs=123.1

Q ss_pred             CCCCCcEEEeeccHHHHHHHHhhCccccchhhHHHHhhhhHhhhcccccchhHHHHHHHHHHHHh-hcCCHHHHHHHHHH
Q 038926            3 ENMLASVIVTDRELALMKVIQKIFPSATTFLCRWHISRNVLANCKNLFETNEIWQTFISSWNLLV-LSASEEEFAQRLKG   81 (153)
Q Consensus         3 ~~~~P~~i~TD~d~a~~~Ai~~vFP~~~~~lC~wHi~~n~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~t~~~f~~~~~~   81 (153)
                      +|+.|++|+||+|.||.+||+.|||+|.|++|.|||++|+.++++..+..   .+.|...|..++ .+.|++||+.+|..
T Consensus       344 ~gk~P~tIiTDqd~am~~AI~~VfP~t~Hr~C~wHI~~~~~e~L~~~~~~---~~~f~~~f~~cv~~s~t~eEFE~~W~~  420 (846)
T PLN03097        344 GGQAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIKQ---HENFMAKFEKCIYRSWTEEEFGKRWWK  420 (846)
T ss_pred             CCCCCceEEecCCHHHHHHHHHHCCCceehhhHHHHHHHHHHHhhHHhhh---hhHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999887653   356778887755 67799999999999


Q ss_pred             HHHhccCchHHHHHHHHhhchhhhHHHHHHHhccCCCcch-----hhhhHHHHHhhhhcCCCcHHHHHHHHHhhhc
Q 038926           82 METDFSKYPIVLTYIRNVWLDKCKEKFVSAWTNSVMHFRN-----VESSHSKLKKQLRTSRGTFESSWTKIHTFLE  152 (153)
Q Consensus        82 ~~~~~~~~~~~~~Y~~~~W~~p~~e~w~~~~~~~~~~~~n-----~Es~~~~lK~~l~~~~~~l~~~~~~~~~~l~  152 (153)
                      |.++|+.  .-..||..-|  ..+++||++|.+..+..|.     +||+|+.||+|+.. ..+|..|++++..+|+
T Consensus       421 mi~ky~L--~~n~WL~~LY--~~RekWapaY~k~~F~agm~sTqRSES~Ns~fk~yv~~-~tsL~~Fv~qye~~l~  491 (846)
T PLN03097        421 ILDRFEL--KEDEWMQSLY--EDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHK-KTTVQEFVKQYETILQ  491 (846)
T ss_pred             HHHhhcc--cccHHHHHHH--HhHhhhhHHHhcccccCCcccccccccHHHHHHHHhCc-CCCHHHHHHHHHHHHH
Confidence            9999973  2234666666  3799999999998876555     99999999999976 7899999999999875

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=99.61  E-value=7.3e-17  Score=130.90  Aligned_cols=125  Identities=18%  Similarity=0.302  Sum_probs=104.4

Q ss_pred             CCCCcEEEeeccHHHHHHHHhhCccccchhhHHHHhhhhHhhhcccccchhHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 038926            4 NMLASVIVTDRELALMKVIQKIFPSATTFLCRWHISRNVLANCKNLFETNEIWQTFISSWNLLVLSASEEEFAQRLKGME   83 (153)
Q Consensus         4 ~~~P~~i~TD~d~a~~~Ai~~vFP~~~~~lC~wHi~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~f~~~~~~~~   83 (153)
                      -..|..|++|..+++..||+++||++.++.|.+|.++|+.+++.+     ...+.+.+.++.+..+++.++....+++|.
T Consensus       225 l~~~~lvv~Dg~~gl~~ai~~~fp~a~~QrC~vH~~RNv~~~v~~-----k~~~~v~~~Lk~I~~a~~~e~a~~~l~~f~  299 (381)
T PF00872_consen  225 LKDILLVVSDGHKGLKEAIREVFPGAKWQRCVVHLMRNVLRKVPK-----KDRKEVKADLKAIYQAPDKEEAREALEEFA  299 (381)
T ss_pred             ccccceeeccccccccccccccccchhhhhheechhhhhcccccc-----ccchhhhhhccccccccccchhhhhhhhcc
Confidence            346999999999999999999999999999999999999999865     355677888999999999999999999999


Q ss_pred             Hhcc-CchHHHHHHHHhhchhhhHHH-HHHHhccCCCcch-hhhhHHHHHhhhh
Q 038926           84 TDFS-KYPIVLTYIRNVWLDKCKEKF-VSAWTNSVMHFRN-VESSHSKLKKQLR  134 (153)
Q Consensus        84 ~~~~-~~~~~~~Y~~~~W~~p~~e~w-~~~~~~~~~~~~n-~Es~~~~lK~~l~  134 (153)
                      +++. +||.+.++++++|.. .-..+ .+.-....++++| +||+|+.+|+...
T Consensus       300 ~~~~~kyp~~~~~l~~~~~~-~~tf~~fP~~~~~~i~TTN~iEsln~~irrr~~  352 (381)
T PF00872_consen  300 EKWEKKYPKAAKSLEENWDE-LLTFLDFPPEHRRSIRTTNAIESLNKEIRRRTK  352 (381)
T ss_pred             cccccccchhhhhhhhcccc-ccceeeecchhccccchhhhccccccchhhhcc
Confidence            9987 699999999999863 21111 1112234678888 9999999999765

Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]

Probab=99.38  E-value=2.8e-13  Score=88.83  Aligned_cols=37  Identities=41%  Similarity=0.746  Sum_probs=35.9

Q ss_pred             CcEEEeeccHHHHHHHHhhCccccchhhHHHHhhhhH
Q 038926            7 ASVIVTDRELALMKVIQKIFPSATTFLCRWHISRNVL   43 (153)
Q Consensus         7 P~~i~TD~d~a~~~Ai~~vFP~~~~~lC~wHi~~n~~   43 (153)
                      |++||||++.|+++||+++||++.|++|.||+.||+.
T Consensus        57 p~~ii~D~~~~~~~Ai~~vfP~~~~~~C~~H~~~n~k   93 (93)
T PF10551_consen   57 PKVIISDFDKALINAIKEVFPDARHQLCLFHILRNIK   93 (93)
T ss_pred             ceeeeccccHHHHHHHHHHCCCceEehhHHHHHHhhC
Confidence            9999999999999999999999999999999999974

This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=98.91  E-value=1.3e-08  Score=82.50  Aligned_cols=121  Identities=21%  Similarity=0.332  Sum_probs=98.9

Q ss_pred             cEEEeeccHHHHHHHHhhCccccchhhHHHHhhhhHhhhcccccchhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcc
Q 038926            8 SVIVTDRELALMKVIQKIFPSATTFLCRWHISRNVLANCKNLFETNEIWQTFISSWNLLVLSASEEEFAQRLKGMETDFS   87 (153)
Q Consensus         8 ~~i~TD~d~a~~~Ai~~vFP~~~~~lC~wHi~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~f~~~~~~~~~~~~   87 (153)
                      ..+++|.-.++-+||.++||.+.++.|+.|+.+|+.++...     .+.+.....++.+..+++.++...+|..+.+.+.
T Consensus       208 ~l~v~Dg~~gl~~aI~~v~p~a~~Q~C~vH~~Rnll~~v~~-----k~~d~i~~~~~~I~~a~~~e~~~~~~~~~~~~w~  282 (379)
T COG3328         208 LLVVVDGLKGLPEAISAVFPQAAVQRCIVHLVRNLLDKVPR-----KDQDAVLSDLRSIYIAPDAEEALLALLAFSELWG  282 (379)
T ss_pred             eEEecchhhhhHHHHHHhccHhhhhhhhhHHHhhhhhhhhh-----hhhHHHHhhhhhhhccCCcHHHHHHHHHHHHhhh
Confidence            45678999999999999999999999999999999999865     3566777888889999999999999999988886


Q ss_pred             -CchHHHHHHHHhhchhhhH--HHHHHHhccCCCcch-hhhhHHHHHhhhhc
Q 038926           88 -KYPIVLTYIRNVWLDKCKE--KFVSAWTNSVMHFRN-VESSHSKLKKQLRT  135 (153)
Q Consensus        88 -~~~~~~~Y~~~~W~~p~~e--~w~~~~~~~~~~~~n-~Es~~~~lK~~l~~  135 (153)
                       .+|.+...+.++|.. ...  .+...|. .+.+++| +|++|..+++.+..
T Consensus       283 ~~yP~i~~~~~~~~~~-~~~F~~fp~~~r-~~i~ttN~IE~~n~~ir~~~~~  332 (379)
T COG3328         283 KRYPAILKSWRNALEE-LLPFFAFPSEIR-KIIYTTNAIESLNKLIRRRTKV  332 (379)
T ss_pred             hhcchHHHHHHHHHHH-hcccccCcHHHH-hHhhcchHHHHHHHHHHHHHhh
Confidence             699999999998863 110  1122222 5677888 99999998877664

>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=97.49  E-value=2.6e-05  Score=59.56  Aligned_cols=44  Identities=18%  Similarity=0.237  Sum_probs=40.1

Q ss_pred             CCCCcEEEeeccHHHHHHHHhhCccccchhhHHHHhhhhHhhhc
Q 038926            4 NMLASVIVTDRELALMKVIQKIFPSATTFLCRWHISRNVLANCK   47 (153)
Q Consensus         4 ~~~P~~i~TD~d~a~~~Ai~~vFP~~~~~lC~wHi~~n~~~~~~   47 (153)
                      ....++|.+|...+-..|+++.||+|.+..-.|||+|++.+.+.
T Consensus        54 ~~~v~~V~~Dm~~~y~~~~~~~~P~A~iv~DrFHvvk~~~~al~   97 (249)
T PF01610_consen   54 RKNVKVVSMDMSPPYRSAIREYFPNAQIVADRFHVVKLANRALD   97 (249)
T ss_pred             ccceEEEEcCCCccccccccccccccccccccchhhhhhhhcch
Confidence            45688999999999999999999999999999999999887544

Transposases have been grouped into various families [, , ]. This family includes the IS204 [], IS1001 [], IS1096 [] and IS1165 [] transposases. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function

Probab=96.71  E-value=0.0094  Score=50.08  Aligned_cols=86  Identities=20%  Similarity=0.289  Sum_probs=55.8

Q ss_pred             EEEeeccHHHHHHHHhhCccccchhhHHHHhhhhHhhhcccccchhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcc-
Q 038926            9 VIVTDRELALMKVIQKIFPSATTFLCRWHISRNVLANCKNLFETNEIWQTFISSWNLLVLSASEEEFAQRLKGMETDFS-   87 (153)
Q Consensus         9 ~i~TD~d~a~~~Ai~~vFP~~~~~lC~wHi~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~f~~~~~~~~~~~~-   87 (153)
                      ++..|...-+.+++. .||++.+.|..||+.|.+.+.++..   .+..+.+.   +.+ .......++..++.+..... 
T Consensus       261 iingDGa~WIk~~~~-~~~~~~~~LD~FHl~k~i~~~~~~~---~~~~~~~~---~al-~~~d~~~l~~~L~~~~~~~~~  332 (470)
T PF06782_consen  261 IINGDGASWIKEGAE-FFPKAEYFLDRFHLNKKIKQALSHD---PELKEKIR---KAL-KKGDKKKLETVLDTAESCAKD  332 (470)
T ss_pred             EEeCCCcHHHHHHHH-hhcCceEEecHHHHHHHHHHHhhhC---hHHHHHHH---HHH-HhcCHHHHHHHHHHHHHhhhc
Confidence            456777777777766 9999999999999999999887642   22222222   222 23345555555555544332 


Q ss_pred             -----CchHHHHHHHHhhch
Q 038926           88 -----KYPIVLTYIRNVWLD  102 (153)
Q Consensus        88 -----~~~~~~~Y~~~~W~~  102 (153)
                           ....+..||.+||-.
T Consensus       333 ~~~~~~i~~~~~Yl~~n~~~  352 (470)
T PF06782_consen  333 EEERKKIRKLRKYLLNNWDG  352 (470)
T ss_pred             hHHHHHHHHHHHHHHHCHHH
Confidence                 123678899999863

>PF03461 TRCF: TRCF domain; InterPro: IPR005118 This domain is found in proteins necessary for strand-specific repair in DNA such as TRCF in Escherichia coli

Probab=84.56  E-value=3.8  Score=27.01  Aligned_cols=39  Identities=18%  Similarity=0.254  Sum_probs=28.7

Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHhccCchHHHHHHHH
Q 038926           60 ISSWNLLVLSASEEEFAQRLKGMETDFSKYPIVLTYIRN   98 (153)
Q Consensus        60 ~~~~~~l~~~~t~~~f~~~~~~~~~~~~~~~~~~~Y~~~   98 (153)
                      +..++.+..+.|.++.+.-.+++.++|+..|.-+..+-.
T Consensus        20 l~~Yrrl~~~~~~~el~~l~~El~DRFG~~P~ev~~L~~   58 (101)
T PF03461_consen   20 LELYRRLASAESEEELEDLREELIDRFGPLPEEVENLLE   58 (101)
T ss_dssp             HHHHHHHHC--SHHHHHHHHHHHHHHH-S--HHHHHHHH
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence            577889999999999999999999999987776665543

A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by the transcription-repair-coupling factor (TRCF) which releases RNAP and the truncated transcript.; GO: 0003684 damaged DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0006281 DNA repair; PDB: 2QSR_A 2EYQ_A.

>PF13610 DDE_Tnp_IS240: DDE domain

Probab=84.55  E-value=1.2  Score=30.98  Aligned_cols=25  Identities=32%  Similarity=0.319  Sum_probs=23.5

Q ss_pred             CCCcEEEeeccHHHHHHHHhhCccc
Q 038926            5 MLASVIVTDRELALMKVIQKIFPSA   29 (153)
Q Consensus         5 ~~P~~i~TD~d~a~~~Ai~~vFP~~   29 (153)
                      ..|.+|+||+-.+-..|++.++|+.
T Consensus        57 ~~p~~ivtDk~~aY~~A~~~l~~~~   81 (140)
T PF13610_consen   57 GEPRVIVTDKLPAYPAAIKELNPEG   81 (140)
T ss_pred             cccceeecccCCccchhhhhccccc
Confidence            6899999999999999999999984

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00