Citrus Sinensis ID: 038941

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-----
MGVVTVGELKPSISGKRSFRPSSSIRHATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRVNLSAVPGGAEAFELAAKFCYGINVELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMVLLPLSEEISLVNRLINAIANNACKEQLTSGLLKLDHTFPAKTAQNIEPETPSDWWGKSLAVLNLDFFQRVLSAVKSKGLKQDMISKILINYAHNSLQGLVVRDPQLVKGSLLDLELQKKQRVIVEAIVGLLPTQSRKSPVPMAFLSSLLKTAIAASATTSCRSDLERRIGLQLDQAILEDILIPANSHGSNHSTLYDTDSILRIFSIFLNLDEDDDEDSHMRDESEMIYDFDSPGSPKQSSILKVSKLLDNFLAEVALDSNLMPSKFIALAELLPDHARIVSDGLYRAADIFLKVHPNIKDSERYRLCKTIDCQKLSQEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMSGGHNQFFFGAINGQFPQRSSSGAGSGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVSMKQELVRSHPANKLFKSLAKKLSKLNALFRINGIKPIGGKASSENRFVFQKRWRHSVS
ccccccccccccccccccccccHHHHHccccccccccccEEEEEccEEEEEEccccccccHHHHHHHcccccccccEEEcccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHHHccHHHHHHHHHHHHHHcccccHHHHHHcccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHcccccccccccccccccccccccccccccccccccccc
ccEEEcccccccccccccccccHHHccccEEEEccccccEEEEEccEEEEEccccccccHHHHHHHHHccccccccEEEcccccccHHHHHHHHHHHccEEEEEcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccEcccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHccccccccccccccEEcHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHcHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHccccccccccccccccccccccccccccc
mgvvtvgelkpsisgkrsfrpsssirhatewpisdvssdltiEVGASsfalhkfplvsrsGRIRKLLLEAKDskvsrvnlsavpggaEAFELAAKFCYGINVELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMVLLPLSEEISLVNRLINAIANNACKEQLTSGllkldhtfpaktaqniepetpsdwwgkslAVLNLDFFQRVLSAVKSKGLKQDMISKILINYAHnslqglvvrdpqlvkgsllDLELQKKQRVIVEAIVGllptqsrkspvpMAFLSSLLKTAIAASATTSCRSDLERRIGLQLDQAILEDilipanshgsnhstlydtdSILRIFSIFLnldedddedshmrdesemiydfdspgspkqssILKVSKLLDNFLAEvaldsnlmpsKFIALAEllpdharivSDGLYRAADIFlkvhpnikdseryrlcktidcqKLSQEACSHAaqnerlpvQMAVQVLYFEQIRLRnamsgghnqfffgaingqfpqrsssgagsgaisprdnyaSVRRENRELKLEVARMRMRLTDLEKDHVSMKQELVRSHPANKLFKSLAKKLSKLNALFRingikpiggkassenRFVFQKRWRHSVS
mgvvtvgelkpsisgkrsfrpsssirhatewpisdvsSDLTIEVGASSfalhkfplvsrsgrIRKLLleakdskvsrvnLSAVPGGAEAFELAAKFCYGINVELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMVLLPLSEEISLVNRLINAIANNACKEQLTSGLLKLDHTFPAKTAQNIEPETPSDWWGKSLAVLNLDFFQRVLSAVKSKGLKQDMISKILINYAHNSLQGLVVRDPQLVKGSLLDLELQKKQRVIVEAIVgllptqsrkspVPMAFLSSLLKTAIAASATTSCRSDLERRIGLQLDQAILEDILIPANSHGSNHSTLYDTDSILRIFSIFLNLDEDDDEDSHMRDESEMiydfdspgspKQSSILKVSKLLDNFLAEVALDSNLMPSKFIALAELLPDHARIVSDGLYRAADIFLkvhpnikdseryRLCKTIDCQKLSQEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMSGGHNQFFFGAINGQFPQRSSSgagsgaisprdnyasvrrenrelkleVARMRMRLTDLEKDHVSMKQELVRSHPANKLFKSLAKKLSKLNALFRINgikpiggkassenrfvfqkrwrhsvs
MGVVTVGELKPSISGKRSFRPSSSIRHATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRVNLSAVPGGAEAFELAAKFCYGINVELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMVLLPLSEEISLVNRLINAIANNACKEQLTSGLLKLDHTFPAKTAQNIEPETPSDWWGKSLAVLNLDFFQRVLSAVKSKGLKQDMISKILINYAHNSLQGLVVRDPQLVKGSLLDLELQKKQRVIVEAIVGLLPTQSRKSPVPMAFLSSLLKTAIAASATTSCRSDLERRIGLQLDQAILEDILIPANSHGSNHSTLYDTDSILRIFSIFLNLdedddedshmrdesemIYDFDSPGSPKQSSILKVSKLLDNFLAEVALDSNLMPSKFIALAELLPDHARIVSDGLYRAADIFLKVHPNIKDSERYRLCKTIDCQKLSQEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMSGGHNQFFFGAINGQFPQRsssgagsgaisPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVSMKQELVRSHPAnklfkslakklsklnalfRINGIKPIGGKASSENRFVFQKRWRHSVS
******************************WPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRVNLSAVPGGAEAFELAAKFCYGINVELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMVLLPLSEEISLVNRLINAIANNACKEQLTSGLLKLDHTFPAKTAQNIE*ETPSDWWGKSLAVLNLDFFQRVLSAVKSKGLKQDMISKILINYAHNSLQGLVVRDPQLVKGSLLDLELQKKQRVIVEAIVGLLPTQS***PVPMAFLSSLLKTAIAASATTSCRSDLERRIGLQLDQAILEDILIPANSHGSNHSTLYDTDSILRIFSIFLNL******************************ILKVSKLLDNFLAEVALDSNLMPSKFIALAELLPDHARIVSDGLYRAADIFLKVHPNIKDSERYRLCKTIDCQKLSQEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMSGGHNQFFFGAING****************************************************************LFKSLAKKLSKLNALFRINGIKPIGG******RFVF*********
*****************************EWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKL************NLSAVPGGAEAFELAAKFCYGINVELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMVLLPLSEEISLVNRLINAIANNACKEQLTSGLLKLDHT****************WWGKSLAVLNLDFFQRVLSAVKSKGLKQDMISKILINYAHNSLQG*******************KKQRVIVEAIVGLLPTQSRKSPVPMAFLSSLLKTAIAASATTSCRSDLERRIGLQLDQAILEDILIPANSHGSNHSTLYDTDSILRIFSIF***********************************KVSKLLDNFLAEVALDSNLMPSKFIALAELLPDHARIVSDGLYRAADIFLKVHP*****ERYRLCKTIDCQKLSQEACSHAAQNERLPVQMAVQVLYFE***********************************************************************************************************************************
MGVVTVGELKPS***********SIRHATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRVNLSAVPGGAEAFELAAKFCYGINVELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMVLLPLSEEISLVNRLINAIANNACKEQLTSGLLKLDHTFPAKTAQNIEPETPSDWWGKSLAVLNLDFFQRVLSAVKSKGLKQDMISKILINYAHNSLQGLVVRDPQLVKGSLLDLELQKKQRVIVEAIVGLLPTQSRKSPVPMAFLSSLLKTAIAASATTSCRSDLERRIGLQLDQAILEDILIPANSHGSNHSTLYDTDSILRIFSIFLNLDEDDDEDSHMRDESEMIYD**********SILKVSKLLDNFLAEVALDSNLMPSKFIALAELLPDHARIVSDGLYRAADIFLKVHPNIKDSERYRLCKTIDCQKLSQEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMSGGHNQFFFGAINGQFP***************DNYASVRRENRELKLEVARMRMRLTDLEKDHVSMKQELVRSHPANKLFKSLAKKLSKLNALFRINGIKPIGGKASSENRFVFQ********
*************************RHATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRVNLSAVPGGAEAFELAAKFCYGINVELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMVLLPLSEEISLVNRLINAIANNACKEQLTSGLLKL**************ETPSDWWGKSLAVLNLDFFQRVLSAVKSKGLKQDMISKILINYAHNSLQGL*****************QKKQRVIVEAIVGLLPTQSRKSPVPMAFLSSLLKTAIAASATTSCRSDLERRIGLQLDQAILEDILIPANSHGSNHSTLYDTDSILRIFSIFLNLDED************************QSSILKVSKLLDNFLAEVALDSNLMPSKFIALAELLPDHARIVSDGLYRAADIFLKVHPNIKDSERYRLCKTIDCQKLSQEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMS******************************RDNYASVRRENRELKLEVARMRMRLTDLEKDHVSMKQELVR**PANKLFK******************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGVVTVGELKPSISGKRSFRPSSSIRHATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRVNLSAVPGGAEAFELAAKFCYGINVELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMVLLPLSEEISLVNRLINAIANNACKEQLTSGLLKLDHTFPAKTAQNIEPETPSDWWGKSLAVLNLDFFQRVLSAVKSKGLKQDMISKILINYAHNSLQGLVVRDPQLVKGSLLDLELQKKQRVIVEAIVGLLPTQSRKSPVPMAFLSSLLKTAIAASATTSCRSDLERRIGLQLDQAILEDILIPANSHGSNHSTLYDTDSILRIFSIFLNLDEDDDEDSHMRDESEMIYDFDSPGSPKQSSILKVSKLLDNFLAEVALDSNLMPSKFIALAELLPDHARIVSDGLYRAADIFLKVHPNIKDSERYRLCKTIDCQKLSQEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMSGGHNQFFFGAINGQFPQRSSSGAGSGAISPRDNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLVRSHPANKLFKSLAKKLSKLNALFRINGIKPIGGKASSENRFVFQKRWRHSVS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query615 2.2.26 [Sep-21-2011]
Q9SA69634 BTB/POZ domain-containing yes no 0.988 0.958 0.730 0.0
O82253635 BTB/POZ domain-containing no no 0.960 0.930 0.620 0.0
Q9FKB6614 BTB/POZ domain-containing no no 0.866 0.868 0.462 1e-142
Q9C9Z7617 BTB/POZ domain-containing no no 0.878 0.875 0.433 1e-124
Q9C9Z0582 Putative BTB/POZ domain-c no no 0.814 0.860 0.416 1e-118
Q66GP0604 BTB/POZ domain-containing no no 0.926 0.943 0.384 1e-114
Q9S9Q9665 BTB/POZ domain-containing no no 0.855 0.790 0.371 7e-96
Q682S0593 Root phototropism protein no no 0.839 0.870 0.337 5e-92
Q9LYW0592 BTB/POZ domain-containing no no 0.848 0.881 0.359 1e-91
Q9FNB3591 Putative BTB/POZ domain-c no no 0.824 0.857 0.361 5e-87
>sp|Q9SA69|Y1301_ARATH BTB/POZ domain-containing protein At1g03010 OS=Arabidopsis thaliana GN=At1g03010 PE=2 SV=1 Back     alignment and function desciption
 Score =  918 bits (2373), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/641 (73%), Positives = 542/641 (84%), Gaps = 33/641 (5%)

Query: 1   MGVVTVGELKPSISGKRSFRPSSSIRHATEWPISDVSSDLTIEVGASSFALHKFPLVSRS 60
           MG+VTVGELKP+ +GKR FR +S+IRHA+EWPISDVSSDLT++VG+SSF LHKFPLVSRS
Sbjct: 1   MGLVTVGELKPAFTGKRGFRLNSTIRHASEWPISDVSSDLTVQVGSSSFCLHKFPLVSRS 60

Query: 61  GRIRKLLLEAKDSKVSRVNLSAVPGGAEAFELAAKFCYGINVELTLSNVATIRCVAHFLE 120
           G+IRKLL    D K+S V LS  PGG+EAFELAAKFCYGIN+E+ L N+A +RC +H+LE
Sbjct: 61  GKIRKLL---ADPKISNVCLSNAPGGSEAFELAAKFCYGINIEINLLNIAKLRCASHYLE 117

Query: 121 MTEDFAEKNLEARAEAYLKEMV----------------LLPLSEEISLVNRLINAIANNA 164
           MTEDF+E+NL ++ E +LKE +                L+P+SE+++LVNRLI A+ANNA
Sbjct: 118 MTEDFSEENLASKTEHFLKETIFPSILNSIIVLHHCETLIPVSEDLNLVNRLIIAVANNA 177

Query: 165 CKEQLTSGLLKLDHTFPAKTAQNIEPETPSDWWGKSLAVLNLDFFQRVLSAVKSKGLKQD 224
           CKEQLTSGLLKLD++F   +  NIEP+TP DWWGKSLAVLNLDFFQRV+SAVKSKGL QD
Sbjct: 178 CKEQLTSGLLKLDYSF---SGTNIEPQTPLDWWGKSLAVLNLDFFQRVISAVKSKGLIQD 234

Query: 225 MISKILINYAHNSLQGLVVRDPQLVKGSLLDLELQKKQRVIVEAIVGLLPTQSRKSPVPM 284
           +ISKILI+Y + SLQGL+VRDP+L K  +LD E +KKQR+IVE IV LLPTQ R+S VPM
Sbjct: 235 VISKILISYTNKSLQGLIVRDPKLEKERVLDSEGKKKQRLIVETIVRLLPTQGRRSSVPM 294

Query: 285 AFLSSLLKTAIAASATTS---CRSDLERRIGLQLDQAILEDILIPANSHGSNHSTLYDTD 341
           AFLSSLLK  IA S++ S   CRSDLERRIGLQLDQAILED+LIP N +G+N+ T+YD D
Sbjct: 295 AFLSSLLKMVIATSSSASTGSCRSDLERRIGLQLDQAILEDVLIPINLNGTNN-TMYDID 353

Query: 342 SILRIFSIFLNLDEDDDEDS----HMRDESEMIYDFDSPGSPKQSSILKVSKLLDNFLAE 397
           SILRIFSIFLNLDEDD+E+       RDE+EMIYDFDSPGSPKQSSILKVSKL+DN+LAE
Sbjct: 354 SILRIFSIFLNLDEDDEEEEHHHLQFRDETEMIYDFDSPGSPKQSSILKVSKLMDNYLAE 413

Query: 398 VALDSNLMPSKFIALAELLPDHARIVSDGLYRAADIFLKVHPNIKDSERYRLCKTIDCQK 457
           +A+D NL  SKFIALAELLPDHARI+SDGLYRA DI+LKVHPNIKDSERYRLCKTID QK
Sbjct: 414 IAMDPNLTTSKFIALAELLPDHARIISDGLYRAVDIYLKVHPNIKDSERYRLCKTIDSQK 473

Query: 458 LSQEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMSG--GHNQFFFGAINGQFPQRSSSG 515
           LSQEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMS   G  QF F +   QFPQRS SG
Sbjct: 474 LSQEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMSSSIGPTQFLFNSNCHQFPQRSGSG 533

Query: 516 AGSGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVSMKQELVRSHPANKLFKSL 575
           AGSGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDH+S+KQELV+S+P  KLFKS 
Sbjct: 534 AGSGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHISIKQELVKSNPGTKLFKSF 593

Query: 576 AKKLSKLNALFRINGIKP-IGGKASSENRFVFQKRWRHSVS 615
           AKK+SKLN+LF  + +KP + GKASSE+RF+FQ++ RHSVS
Sbjct: 594 AKKISKLNSLFSFSSLKPSLSGKASSESRFLFQRKRRHSVS 634
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|O82253|SETH6_ARATH BTB/POZ domain-containing protein SETH6 OS=Arabidopsis thaliana GN=SETH6 PE=2 SV=1 Back     alignment and function description
>sp|Q9FKB6|Y5880_ARATH BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1 Back     alignment and function description
>sp|Q9C9Z7|Y3857_ARATH BTB/POZ domain-containing protein At3g08570 OS=Arabidopsis thaliana GN=At3g08570 PE=2 SV=2 Back     alignment and function description
>sp|Q9C9Z0|Y3866_ARATH Putative BTB/POZ domain-containing protein At3g08660 OS=Arabidopsis thaliana GN=At3g08660 PE=3 SV=1 Back     alignment and function description
>sp|Q66GP0|Y5738_ARATH BTB/POZ domain-containing protein At5g67385 OS=Arabidopsis thaliana GN=At5g67385 PE=2 SV=2 Back     alignment and function description
>sp|Q9S9Q9|Y1044_ARATH BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2 Back     alignment and function description
>sp|Q682S0|RPT2_ARATH Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2 Back     alignment and function description
>sp|Q9LYW0|Y5325_ARATH BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1 Back     alignment and function description
>sp|Q9FNB3|Y5360_ARATH Putative BTB/POZ domain-containing protein At5g13600 OS=Arabidopsis thaliana GN=At5g13600 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query615
255559298631 protein binding protein, putative [Ricin 0.998 0.973 0.895 0.0
224129658631 predicted protein [Populus trichocarpa] 1.0 0.974 0.873 0.0
224128542632 predicted protein [Populus trichocarpa] 1.0 0.973 0.879 0.0
449436541675 PREDICTED: BTB/POZ domain-containing pro 1.0 0.911 0.848 0.0
359479751631 PREDICTED: BTB/POZ domain-containing pro 1.0 0.974 0.865 0.0
449526820675 PREDICTED: LOW QUALITY PROTEIN: BTB/POZ 1.0 0.911 0.846 0.0
359479753655 PREDICTED: BTB/POZ domain-containing pro 1.0 0.938 0.833 0.0
319428669 731 NPH3 family protein [Phaseolus vulgaris] 0.991 0.834 0.822 0.0
356500276630 PREDICTED: BTB/POZ domain-containing pro 0.991 0.968 0.837 0.0
356505528629 PREDICTED: BTB/POZ domain-containing pro 0.993 0.971 0.821 0.0
>gi|255559298|ref|XP_002520669.1| protein binding protein, putative [Ricinus communis] gi|223540054|gb|EEF41631.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1136 bits (2939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/632 (89%), Positives = 597/632 (94%), Gaps = 18/632 (2%)

Query: 1   MGVVTVGELKPSISGKRSFRPSSSIRHATEWPISDVSSDLTIEVGASSFALHKFPLVSRS 60
           MGVVTV ELKPSISGKRSFRPSSSIRHATEWPISDVSSDLT+E+GASSFALHKFPLVSRS
Sbjct: 1   MGVVTVAELKPSISGKRSFRPSSSIRHATEWPISDVSSDLTVEIGASSFALHKFPLVSRS 60

Query: 61  GRIRKLLLEAKDSKVSRVNLSAVPGGAEAFELAAKFCYGINVELTLSNVATIRCVAHFLE 120
           GRIRKLLLEAKDSKVSR++++ VPGGAEAFELAAKFCYG+NVE+TLSNVA I C AHFLE
Sbjct: 61  GRIRKLLLEAKDSKVSRISIACVPGGAEAFELAAKFCYGVNVEITLSNVAMILCAAHFLE 120

Query: 121 MTEDFAEKNLEARAEAYLKEMVL----------------LPLSEEISLVNRLINAIANNA 164
           MTEDFAEKNLEARAEAYLKEMVL                LP+SEEI+LVNRLIN IA+NA
Sbjct: 121 MTEDFAEKNLEARAEAYLKEMVLPNISSSISVLHRCETLLPMSEEINLVNRLINGIASNA 180

Query: 165 CKEQLTSGLLKLDHTFPAKTAQNIEPETPSDWWGKSLAVLNLDFFQRVLSAVKSKGLKQD 224
           CKEQLTSGLLKLDH FP+K   N+EPETPSDWWGKSLAVLNLDFFQRVLS VKSKGLKQD
Sbjct: 181 CKEQLTSGLLKLDHNFPSKET-NMEPETPSDWWGKSLAVLNLDFFQRVLSTVKSKGLKQD 239

Query: 225 MISKILINYAHNSLQGLVVRDPQLVKGSLLDLELQKKQRVIVEAIVGLLPTQSRKSPVPM 284
           MISKILINYAHNSLQGLVVRDP L+KGSLLDLELQKKQRVIVEAIV LLPTQSRKSPVPM
Sbjct: 240 MISKILINYAHNSLQGLVVRDPHLLKGSLLDLELQKKQRVIVEAIVSLLPTQSRKSPVPM 299

Query: 285 AFLSSLLKTAIAASATTSCRSDLERRIGLQLDQAILEDILIPANSHGSNHSTLYDTDSIL 344
           AFLSSLLKTAIAASATTSCRSDLERRIGLQLDQAILEDILIPANSHG++HSTLYDTDSIL
Sbjct: 300 AFLSSLLKTAIAASATTSCRSDLERRIGLQLDQAILEDILIPANSHGNSHSTLYDTDSIL 359

Query: 345 RIFSIFLNLDEDDDEDSHMRDESEMIYDFDSPGSPKQSSILKVSKLLDNFLAEVALDSNL 404
           RIFS+FLNLDEDDDED+H+RDESEMIYDFDSPGSPKQSSILKVSKLLDN+LAEVALDSNL
Sbjct: 360 RIFSMFLNLDEDDDEDNHLRDESEMIYDFDSPGSPKQSSILKVSKLLDNYLAEVALDSNL 419

Query: 405 MPSKFIALAELLPDHARIVSDGLYRAADIFLKVHPNIKDSERYRLCKTIDCQKLSQEACS 464
           MPSKFI+LAELLPDHAR+VSDGLYRA DIFLKVHPNIKDSERYRLCKTIDCQKLSQEACS
Sbjct: 420 MPSKFISLAELLPDHARLVSDGLYRAVDIFLKVHPNIKDSERYRLCKTIDCQKLSQEACS 479

Query: 465 HAAQNERLPVQMAVQVLYFEQIRLRNAMSGGHNQFFFGAINGQFPQRSSSGAGSGAISPR 524
           HAAQNERLPVQMAVQVLYFEQIRLRNAM+GGHNQFFFGA+NGQFPQRS SGAGSGAISPR
Sbjct: 480 HAAQNERLPVQMAVQVLYFEQIRLRNAMNGGHNQFFFGAMNGQFPQRSGSGAGSGAISPR 539

Query: 525 DNYASVRRENRELKLEVARMRMRLTDLEKDHVSMKQELVRSHPANKLFKSLAKKLSKLNA 584
           DNYASVRRENRELKLEVARMRMRLTDLEKDHVSMKQELVR+HPANKLFKS  +KLSKLN+
Sbjct: 540 DNYASVRRENRELKLEVARMRMRLTDLEKDHVSMKQELVRTHPANKLFKSFTRKLSKLNS 599

Query: 585 LFRINGIKPI-GGKASSENRFVFQKRWRHSVS 615
           LFRING+KPI GGKA+SE+RF+FQKR RHSVS
Sbjct: 600 LFRINGLKPIGGGKANSESRFLFQKRRRHSVS 631

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224129658|ref|XP_002320640.1| predicted protein [Populus trichocarpa] gi|222861413|gb|EEE98955.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224128542|ref|XP_002320358.1| predicted protein [Populus trichocarpa] gi|222861131|gb|EEE98673.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449436541|ref|XP_004136051.1| PREDICTED: BTB/POZ domain-containing protein At1g03010-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359479751|ref|XP_002267241.2| PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform 1 [Vitis vinifera] gi|296086620|emb|CBI32255.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449526820|ref|XP_004170411.1| PREDICTED: LOW QUALITY PROTEIN: BTB/POZ domain-containing protein At1g03010-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359479753|ref|XP_002267273.2| PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|319428669|gb|ADV56692.1| NPH3 family protein [Phaseolus vulgaris] Back     alignment and taxonomy information
>gi|356500276|ref|XP_003518959.1| PREDICTED: BTB/POZ domain-containing protein At1g03010-like [Glycine max] Back     alignment and taxonomy information
>gi|356505528|ref|XP_003521542.1| PREDICTED: BTB/POZ domain-containing protein At1g03010-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query615
TAIR|locus:2007564634 AT1G03010 [Arabidopsis thalian 0.991 0.962 0.635 5.1e-193
TAIR|locus:2077763617 AT3G08570 [Arabidopsis thalian 0.876 0.873 0.422 6.5e-106
TAIR|locus:2156524614 AT5G48800 [Arabidopsis thalian 0.858 0.859 0.428 9.8e-103
TAIR|locus:504954965604 AT5G67385 [Arabidopsis thalian 0.839 0.854 0.383 1.6e-88
TAIR|locus:2028160665 AT1G30440 [Arabidopsis thalian 0.666 0.616 0.358 1.7e-86
TAIR|locus:2173418746 NPH3 "NON-PHOTOTROPIC HYPOCOTY 0.489 0.403 0.334 9.2e-85
TAIR|locus:2064357593 RPT2 "ROOT PHOTOTROPISM 2" [Ar 0.713 0.740 0.378 2.2e-80
TAIR|locus:2083103526 AT3G49970 [Arabidopsis thalian 0.479 0.560 0.385 2.9e-73
TAIR|locus:2154920668 AT5G66560 [Arabidopsis thalian 0.780 0.718 0.330 2.3e-72
TAIR|locus:2082132651 AT3G44820 [Arabidopsis thalian 0.658 0.622 0.303 2.3e-72
TAIR|locus:2007564 AT1G03010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1870 (663.3 bits), Expect = 5.1e-193, P = 5.1e-193
 Identities = 406/639 (63%), Positives = 470/639 (73%)

Query:     1 MGVVTVGELKPSISGKRSFRPSSSIRHATEWPISDVSSDLTIEVGASSFALHKFPLVSRS 60
             MG+VTVGELKP+ +GKR FR +S+IRHA+EWPISDVSSDLT++VG+SSF LHKFPLVSRS
Sbjct:     1 MGLVTVGELKPAFTGKRGFRLNSTIRHASEWPISDVSSDLTVQVGSSSFCLHKFPLVSRS 60

Query:    61 GRIRKLLLEAKDSKVSRVNLSAVPGGAE-AFELAAKFCYGINVELTLSNVATIRCVAHFL 119
             G+IRKLL + K S V   N        E A +        IN+ L ++ +          
Sbjct:    61 GKIRKLLADPKISNVCLSNAPGGSEAFELAAKFCYGINIEINL-LNIAKLRCASHYLEMT 119

Query:   120 E--MTEDFAEKNLEARAE----AYLKEMV-------LLPLSEEISLVNRLINAIANNACK 166
             E    E+ A K      E    + L  ++       L+P+SE+++LVNRLI A+ANNACK
Sbjct:   120 EDFSEENLASKTEHFLKETIFPSILNSIIVLHHCETLIPVSEDLNLVNRLIIAVANNACK 179

Query:   167 EQLTSGLLKLDHTFPAKTAQNIEPETPSDWWGKSLAVLNLDFFQRVLSAVKSKGLKQDMI 226
             EQLTSGLLKLD++F   +  NIEP+TP DWWGKSLAVLNLDFFQRV+SAVKSKGL QD+I
Sbjct:   180 EQLTSGLLKLDYSF---SGTNIEPQTPLDWWGKSLAVLNLDFFQRVISAVKSKGLIQDVI 236

Query:   227 SKILINYAHNSLQGLVVRDPQLVKGSLLDLELQKKQRVIVEAIVGLLPTQSRKSPVPMAF 286
             SKILI+Y + SLQGL+VRDP+L K  +LD E +KKQR+IVE IV LLPTQ R+S VPMAF
Sbjct:   237 SKILISYTNKSLQGLIVRDPKLEKERVLDSEGKKKQRLIVETIVRLLPTQGRRSSVPMAF 296

Query:   287 LSSLLKTAIAASA---TTSCRSDLERRIGLQLDQAILEDILIPANSHGSNHSTLYDTDSI 343
             LSSLLK  IA S+   T SCRSDLERRIGLQLDQAILED+LIP N +G+N+ T+YD DSI
Sbjct:   297 LSSLLKMVIATSSSASTGSCRSDLERRIGLQLDQAILEDVLIPINLNGTNN-TMYDIDSI 355

Query:   344 LRIFSIFLNLXXXXXXXXXXXXX----XXXIYDFDSPGSPKQSSILKVSKLLDNFLAEVA 399
             LRIFSIFLNL                    IYDFDSPGSPKQSSILKVSKL+DN+LAE+A
Sbjct:   356 LRIFSIFLNLDEDDEEEEHHHLQFRDETEMIYDFDSPGSPKQSSILKVSKLMDNYLAEIA 415

Query:   400 LDSNLMPSKFIALAELLPDHARIVSDGLYRAADIFLKVHPNIKDSERYRLCKTIDCQKLS 459
             +D NL  SKFIALAELLPDHARI+SDGLYRA DI+LKVHPNIKDSERYRLCKTID QKLS
Sbjct:   416 MDPNLTTSKFIALAELLPDHARIISDGLYRAVDIYLKVHPNIKDSERYRLCKTIDSQKLS 475

Query:   460 QEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMSG--GHNQFFFGAINGQFPQRXXXXXX 517
             QEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMS   G  QF F +   QFPQR      
Sbjct:   476 QEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMSSSIGPTQFLFNSNCHQFPQRSGSGAG 535

Query:   518 XXXXXPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVSMKQELVRSHPAXXXXXXXXX 577
                  PRDNYASVRRENRELKLEVARMRMRLTDLEKDH+S+KQELV+S+P          
Sbjct:   536 SGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHISIKQELVKSNPGTKLFKSFAK 595

Query:   578 XXXXXXXXXRINGIKP-IGGKASSENRFVFQKRWRHSVS 615
                        + +KP + GKASSE+RF+FQ++ RHSVS
Sbjct:   596 KISKLNSLFSFSSLKPSLSGKASSESRFLFQRKRRHSVS 634
GO:0004871 "signal transducer activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0009416 "response to light stimulus" evidence=IEA;ISS
GO:0009860 "pollen tube growth" evidence=IEP
TAIR|locus:2077763 AT3G08570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156524 AT5G48800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504954965 AT5G67385 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028160 AT1G30440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173418 NPH3 "NON-PHOTOTROPIC HYPOCOTYL 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064357 RPT2 "ROOT PHOTOTROPISM 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083103 AT3G49970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154920 AT5G66560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082132 AT3G44820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SA69Y1301_ARATHNo assigned EC number0.73010.98860.9589yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query615
pfam03000249 pfam03000, NPH3, NPH3 family 1e-114
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 8e-05
pfam00651101 pfam00651, BTB, BTB/POZ domain 4e-04
>gnl|CDD|217312 pfam03000, NPH3, NPH3 family Back     alignment and domain information 
 Score =  342 bits (879), Expect = e-114
 Identities = 130/270 (48%), Positives = 177/270 (65%), Gaps = 21/270 (7%)

Query: 194 SDWWGKSLAVLNLDFFQRVLSAVKSKGLKQDMISKILINYAHNSLQGLVVRDPQLVKGSL 253
            DWW + L+ L++D F+RV++A+KS+G+K ++I + L++YA   L GL        +   
Sbjct: 1   RDWWFEDLSELSIDLFKRVITAMKSRGVKPEVIGEALMHYAKKWLPGLS-------RSGS 53

Query: 254 LDLELQKKQRVIVEAIVGLLPTQSRKSPVPMAFLSSLLKTAIAASATTSCRSDLERRIGL 313
            + + +++QR ++E IV LLP++  K  V  +FL  LL+ AI   A+ SCR +LERRIGL
Sbjct: 54  SEEDSEEEQRALLETIVSLLPSE--KGSVSCSFLFKLLRAAIILGASESCREELERRIGL 111

Query: 314 QLDQAILEDILIPANSHGSNHSTLYDTDSILRIFSIFLNLDEDDDEDSHMRDESEMIYDF 373
           QLDQA L+D+LIP  S  S   TLYD D + RI  +FL+ D             +   D 
Sbjct: 112 QLDQATLDDLLIP--SGYSGEETLYDVDLVQRILEVFLSRDAAT----------QSSDDE 159

Query: 374 DSPGSPKQSSILKVSKLLDNFLAEVALDSNLMPSKFIALAELLPDHARIVSDGLYRAADI 433
           DS  SP  SS+LKV+KL+D +LAE+A D NL  SKFIALAE +PD AR   DGLYRA DI
Sbjct: 160 DSEASPSSSSLLKVAKLVDGYLAEIAPDPNLKLSKFIALAEAVPDSARPSHDGLYRAIDI 219

Query: 434 FLKVHPNIKDSERYRLCKTIDCQKLSQEAC 463
           +LK HPN+ +SE+ RLC+ +DCQKLSQEAC
Sbjct: 220 YLKAHPNLSESEKKRLCRLMDCQKLSQEAC 249

Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay. Length = 249
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 615
PF03000258 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 pr 100.0
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.96
PHA02713557 hypothetical protein; Provisional 99.95
PHA03098534 kelch-like protein; Provisional 99.92
PHA02790480 Kelch-like protein; Provisional 99.92
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.66
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.57
KOG4350620 consensus Uncharacterized conserved protein, conta 99.4
KOG2075521 consensus Topoisomerase TOP1-interacting protein B 99.25
KOG4591280 consensus Uncharacterized conserved protein, conta 98.9
KOG4682488 consensus Uncharacterized conserved protein, conta 98.58
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.1
KOG07831267 consensus Uncharacterized conserved protein, conta 98.09
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 97.94
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 96.95
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 96.42
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 96.15
KOG2716230 consensus Polymerase delta-interacting protein PDI 95.97
KOG3473112 consensus RNA polymerase II transcription elongati 95.57
KOG2838401 consensus Uncharacterized conserved protein, conta 95.22
smart00875101 BACK BTB And C-terminal Kelch. The BACK domain is 94.9
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 94.76
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 94.27
KOG3840438 consensus Uncharaterized conserved protein, contai 85.36
KOG2838401 consensus Uncharacterized conserved protein, conta 84.69
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 80.4
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana Back     alignment and domain information 
Probab=100.00  E-value=8.8e-85  Score=662.85  Aligned_cols=258  Identities=49%  Similarity=0.802  Sum_probs=227.0

Q ss_pred             CcccccccccCCHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhcCCCccCCccccccccccHHHHHHHHHHHHHHHHhC
Q 038941          194 SDWWGKSLAVLNLDFFQRVLSAVKSKGLKQDMISKILINYAHNSLQGLVVRDPQLVKGSLLDLELQKKQRVIVEAIVGLL  273 (615)
Q Consensus       194 ~~WW~EDl~~Ls~d~~~rvI~am~~~g~~ee~V~~al~~YakkwL~~~~~~~~~~r~~~~~~~~~~~~~r~LLEtIv~LL  273 (615)
                      .+||+||++.|++|+|+|||.+|+++|++++.|+++|++||+|||+++..+................++|.+||+||+||
T Consensus         1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiV~lL   80 (258)
T PF03000_consen    1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSSSSAESSTSSENEQRELLETIVSLL   80 (258)
T ss_pred             CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcccccccccccccccchhHHHHHHHHHHHHHhC
Confidence            37999999999999999999999999999999999999999999999853211111111223456789999999999999


Q ss_pred             CCCCCCCCCChHHHHHHHHHHHhhcCChhhHHHHHHHHhhhhhhhhhhhhcccCCCCCCCCCccccHHHHHHHHHHHHcC
Q 038941          274 PTQSRKSPVPMAFLSSLLKTAIAASATTSCRSDLERRIGLQLDQAILEDILIPANSHGSNHSTLYDTDSILRIFSIFLNL  353 (615)
Q Consensus       274 P~~~~~~~vs~~fL~~lLr~a~~l~as~~Cr~~LEkrIg~qLd~AtldDLLiPs~~~~~~~~~lyDvd~V~ril~~Fl~~  353 (615)
                      |.+  ++++||+|||+|||+|++++++..||.+||+|||.|||||||||||||+ ++.+ .+|+||||+|+|||++||.+
T Consensus        81 P~e--~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~-~~~~-~~t~yDVd~V~riv~~Fl~~  156 (258)
T PF03000_consen   81 PPE--KGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPS-SPSG-EDTLYDVDLVQRIVEHFLSQ  156 (258)
T ss_pred             CCC--CCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccC-CCCc-ccchhhHHHHHHHHHHHHhc
Confidence            987  9999999999999999999999999999999999999999999999999 4333 35999999999999999998


Q ss_pred             CCCCCccccccccccccccCCCCCCCCchhHHHHHHHHHHHHHhhccCCCCChhHHHHHHHhcCcccccccchhHHHHHH
Q 038941          354 DEDDDEDSHMRDESEMIYDFDSPGSPKQSSILKVSKLLDNFLAEVALDSNLMPSKFIALAELLPDHARIVSDGLYRAADI  433 (615)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~~DgLYrAIDi  433 (615)
                      ++..+..        ...+....+.++..++.+||||||+||||||+|+||+|+||++|||++|++||++||||||||||
T Consensus       157 ~~~~~~~--------~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~  228 (258)
T PF03000_consen  157 EEEAGEE--------EESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDI  228 (258)
T ss_pred             ccccccc--------cccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHH
Confidence            6532210        11222233466788999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCCHHHhhhhccccccccCCHHHh
Q 038941          434 FLKVHPNIKDSERYRLCKTIDCQKLSQEAC  463 (615)
Q Consensus       434 YLk~Hp~lse~Er~~lC~~mdc~KLS~EAc  463 (615)
                      |||+||+|||+||++||++|||||||+|||
T Consensus       229 YLk~Hp~ls~~Er~~lC~~ldc~KLS~EAC  258 (258)
T PF03000_consen  229 YLKAHPGLSEEERKRLCRLLDCQKLSPEAC  258 (258)
T ss_pred             HHHHcccCCHHHHHHHHhhCCcccCCcccC
Confidence            999999999999999999999999999999

The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>smart00875 BACK BTB And C-terminal Kelch Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query615
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-12
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 1e-05
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 3e-05
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 9e-05
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 9e-05
3b84_A119 Zinc finger and BTB domain-containing protein 48; 2e-04
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 4e-04
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 5e-04
2vpk_A116 Myoneurin; transcription regulation, transcription 5e-04
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 5e-04
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 5e-04
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 5e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 79.1 bits (194), Expect = 2e-15
 Identities = 81/486 (16%), Positives = 152/486 (31%), Gaps = 138/486 (28%)

Query: 57  VSRS---GRIRKLLLEAKDSKVSRVNLSAVPG-G-----AEA---FELAAKFCYGINVEL 104
           VSR     ++R+ LLE + +K   V +  V G G      +    +++  K  + I   L
Sbjct: 131 VSRLQPYLKLRQALLELRPAK--NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-FWL 187

Query: 105 TLSNVATIRCVAHFLEMTEDF---AEKNLEARAEAYLKEMVLLPLSEEISLVNRLINAIA 161
            L N  +   V   LEM +      + N  +R++        L +    + + RL+    
Sbjct: 188 NLKNCNSPETV---LEMLQKLLYQIDPNWTSRSDHSSNIK--LRIHSIQAELRRLL---- 238

Query: 162 NNACKEQLTSGLLKLDHTFPAKTAQNIEPE-----TPSDWWGKSLA-VLNLDFFQRVLSA 215
                +   + LL L +   AK             T      K +   L+      +   
Sbjct: 239 ---KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF---KQVTDFLSAATTTHISLD 292

Query: 216 VKSKGLKQDMISKILINYAHNSLQGL----VVRDPQLVK--GSLL-----------DLEL 258
             S  L  D +  +L+ Y     Q L    +  +P+ +      +            +  
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 259 QKKQRVIVEAIVGLLPTQSRK-----------SPVPMAFLSSL---LKTAIAASATTSC- 303
            K   +I  ++  L P + RK           + +P   LS +   +  +          
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 304 -RSDLERRI--------GLQLDQAILEDILIPANSHGSNHSTLYDTDSILRIFSIF-LNL 353
             S +E++          + L      ++ +   +  + H ++ D  +I + F    L  
Sbjct: 413 KYSLVEKQPKESTISIPSIYL------ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466

Query: 354 DEDDD-------------EDSHMRDESEMIY-DF---------DSPGSPKQSSIL----- 385
              D              E         M++ DF         DS       SIL     
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526

Query: 386 -----------------KVSKLLDNFLAEVALDSNLMPSKFIALAE--LLPDHARIVSDG 426
                             V+ +LD FL ++    NL+ SK+  L    L+ +   I  + 
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILD-FLPKIE--ENLICSKYTDLLRIALMAEDEAIFEEA 583

Query: 427 LYRAAD 432
            ++   
Sbjct: 584 -HKQVQ 588
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query615
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.96
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.96
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.84
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.84
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.84
2vpk_A116 Myoneurin; transcription regulation, transcription 99.83
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.83
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.83
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.83
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.82
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.82
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.82
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.81
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.81
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.81
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.81
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.8
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.79
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.75
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.74
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.43
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.23
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.14
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.95
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.44
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.41
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.38
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 97.83
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 97.53
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 97.52
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 95.89
3kvt_A115 Potassium channel protein SHAW; tetramerization do 94.6
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 93.47
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 91.93
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 91.3
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 90.55
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
Probab=99.96  E-value=3.2e-30  Score=260.33  Aligned_cols=229  Identities=13%  Similarity=0.155  Sum_probs=168.0

Q ss_pred             hhhhhcccccccCCceeEEEEEcCEEEEecccccccccHHHHHhhcCC-C--CCCcceEEecCCCCCHHHHHHHHHHHhc
Q 038941           23 SSIRHATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEA-K--DSKVSRVNLSAVPGGAEAFELAAKFCYG   99 (615)
Q Consensus        23 ~~~~~~~~w~~~~~~~DV~l~V~~~~F~~HK~vLas~S~yfr~mf~~~-~--e~~~~~v~L~~~pGga~~felv~~FcY~   99 (615)
                      .+...-+..+.++.+|||+|.|||+.|++||.+|+++|+||++||++. .  ++...+|.|++++  +++|+.+++|+||
T Consensus        17 ~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~--~~~f~~ll~~~Yt   94 (256)
T 3hve_A           17 RLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDYIFS   94 (256)
T ss_dssp             HHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCC--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCC--HHHHHHHHhhccC
Confidence            344555667888999999999999999999999999999999999874 3  5667789999994  7999999999999


Q ss_pred             CccccchhhhhhHHHhhhhcccchhhhhchHHHHHHHHHHHhh-------hhhhhhhhCcHHHHHHHHHHHhhhhhhccc
Q 038941          100 INVELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMV-------LLPLSEEISLVNRLINAIANNACKEQLTSG  172 (615)
Q Consensus       100 ~~i~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~l-------llp~AE~l~iv~rCidsLa~ka~~~~~~~~  172 (615)
                      |++.|+.+||..|+.||++|||++      |++.|++||.+.+       ++.+|+.+++     +.|..++..-..   
T Consensus        95 ~~~~i~~~~v~~ll~~A~~l~i~~------l~~~c~~~L~~~l~~~n~~~i~~~A~~~~~-----~~L~~~~~~~i~---  160 (256)
T 3hve_A           95 GQIRLNEDTIQDVVQAADLLLLTD------LKTLCCEFLEGCIAAENCIGIRDFALHYCL-----HHVHYLATEYLE---  160 (256)
T ss_dssp             SCCCCC-CCHHHHHHHHHHHTCHH------HHHHHHHHHHHTCCSSTTHHHHHHHHHTTC-----HHHHHHHHHHHH---
T ss_pred             CCCcccHhHHHHHHHHHHHHChHH------HHHHHHHHHHhhCCHhhHHHHHHHHHHcCc-----HHHHHHHHHHHH---
Confidence            999999999999999999999998      9999999999977       7889999987     333333321110   


Q ss_pred             ccccCCCCCcccccCCCCCCCCcccccccccCCHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhcCCCccCCccccccc
Q 038941          173 LLKLDHTFPAKTAQNIEPETPSDWWGKSLAVLNLDFFQRVLSAVKSKGLKQDMISKILINYAHNSLQGLVVRDPQLVKGS  252 (615)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~WW~EDl~~Ls~d~~~rvI~am~~~g~~ee~V~~al~~YakkwL~~~~~~~~~~r~~~  252 (615)
                           .+|.         .   -+-.++|..|+.+.+..+|++......+|+.|++|++    +|+.    +++..|.  
T Consensus       161 -----~~f~---------~---v~~~~~f~~L~~~~l~~lL~~d~L~v~~E~~v~~av~----~W~~----~~~~~R~--  213 (256)
T 3hve_A          161 -----THFR---------D---VSSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVI----RWIA----HDTEIRK--  213 (256)
T ss_dssp             -----HHHH---------H---HTTCHHHHSSCHHHHHHHHHCC-------CTTHHHHT----TTCC----C--CCST--
T ss_pred             -----HHHH---------H---HhCCcchhcCCHHHHHHHHccCCCCCCCHHHHHHHHH----HHHH----cCHHHHH--
Confidence                 0000         0   1226899999999999999999998889999999999    8886    7776663  


Q ss_pred             cccHHHHHHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHhhcCC-hhhHHHHHH
Q 038941          253 LLDLELQKKQRVIVEAIVGLLPTQSRKSPVPMAFLSSLLKTAIAASAT-TSCRSDLER  309 (615)
Q Consensus       253 ~~~~~~~~~~r~LLEtIv~LLP~~~~~~~vs~~fL~~lLr~a~~l~as-~~Cr~~LEk  309 (615)
                             .+...|++.|+  +|      .+|+.||...++...++..+ +.|+..|++
T Consensus       214 -------~~~~~ll~~VR--f~------~l~~~~l~~~v~~~~l~~~~~~~c~~ll~~  256 (256)
T 3hve_A          214 -------VHMKDVMSALW--VS------GLDSSYLREQMLNEPLVREIVKECSNIPLS  256 (256)
T ss_dssp             -------TTHHHHHHHHH--HH------TTCC-CHHHHHHTSTTHHHHHCC-------
T ss_pred             -------HHHHHHHHhCC--CC------CCCHHHHHHHHhcChHHHhhHHHHHHHhhC
Confidence                   35678999998  65      56889999999999999998 789999875
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 615
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 4e-07
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 4e-06
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (111), Expect = 4e-07
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 3/97 (3%)

Query: 38  SDLTIEVGASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRVNLSAVPGGAEAFELAAKFC 97
           +D+ I V    F  HK  L++ SG    +  +     +S +NL       E F +   F 
Sbjct: 26  TDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEIN-PEGFNILLDFM 84

Query: 98  YGINVELTLSNVATIRCVAHFLEMTE--DFAEKNLEA 132
           Y   + L   N+  +   A +L+M    D   K ++A
Sbjct: 85  YTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKA 121
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query615
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.85
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.84
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.61
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.43
d3kvta_103 akv3.1 voltage-gated potassium channel {California 96.35
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 96.1
d1t1da_100 Shaker potassium channel {California sea hare (Apl 94.24
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 91.7
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 91.25
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.8e-22  Score=179.05  Aligned_cols=107  Identities=17%  Similarity=0.277  Sum_probs=97.1

Q ss_pred             hhhhhcccccccCCceeEEEEEcCEEEEecccccccccHHHHHhhcCCCCCCcceEEecCCCCCHHHHHHHHHHHhcCcc
Q 038941           23 SSIRHATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRVNLSAVPGGAEAFELAAKFCYGINV  102 (615)
Q Consensus        23 ~~~~~~~~w~~~~~~~DV~l~V~~~~F~~HK~vLas~S~yfr~mf~~~~e~~~~~v~L~~~pGga~~felv~~FcY~~~i  102 (615)
                      .+..+-+.++.+|.+|||+|.|+|++|++||.+|+++|+||++||.+.    ..++.++++  .+++|+.+++|+|||++
T Consensus        14 ~ll~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~lf~~~----~~~i~~~~v--~~~~f~~ll~~~Ytg~i   87 (121)
T d1buoa_          14 GLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN----SQHYTLDFL--SPKTFQQILEYAYTATL   87 (121)
T ss_dssp             HHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC----CSEEEECSS--CHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHhcCCcEeEEEEECCEEEEEEHHHhcccChhhhhhccCc----cceeecCCC--CHHHHHHHHHheEcccc
Confidence            445556777888999999999999999999999999999999999753    357999999  57999999999999999


Q ss_pred             ccchhhhhhHHHhhhhcccchhhhhchHHHHHHHHHHHh
Q 038941          103 ELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEM  141 (615)
Q Consensus       103 ~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~  141 (615)
                      .++.+||..++.||++|+|++      |.+.|++||+.+
T Consensus        88 ~l~~~~v~~ll~~A~~l~~~~------L~~~C~~~L~~i  120 (121)
T d1buoa_          88 QAKAEDLDDLLYAAEILEIEY------LEEQCLKMLETI  120 (121)
T ss_dssp             CCCGGGHHHHHHHHHHHTCHH------HHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhCCHH------HHHHHHHHHHhC
Confidence            999999999999999999998      999999999763
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure