Citrus Sinensis ID: 038963

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------
Protein Sequence
MACRGCLECLLKLLNFLLTIVGLAMVGYGIYLFVEYKRADNSGTVSPVSGDEGFVQLGRPMLMAVSLADSIFDKLPKAWFIYLFIGVGVVLFVISCVGCIGATTRNGCCLTCVSLVL
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHcccccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEc
Coil and Loop (DISEMBL)
MACRGCLECLLKLLNFLLTIVGLAMVGYGIYLFVEykradnsgtvspvsgdegfvqlgRPMLMAVSLADSIFDKLPKAWFIYLFIGVGVVLFVISCVgcigattrngccltcvslvl
Flexible Loop (DISEMBL)
MACRGCLECLLKLLNFLLTIVGLAMVGYGIYLFVEYKRADNSGTVSPVSGDEGFVQLGRPMLMAVSLADSIFDKLPKAWFIYLFIGVGVVLFVISCVGCIGATTRNGCCLTCVSLVL
Low Complexity Region (SEG)
MACRGClecllkllnfllTIVGLAMVGYGIYLFVEYKRADNSGTVSPVSGDEGFVQLGRPMLMAVSLADSIFDKLPKAWFIYLFIGVGVVLFVISCVGCIGATTRNGCCLTCVSLVL
Disordered region (IsUnstruct)
**CRGCLECLLKLLNFLLTIVGLAMVGYGIYLFVEYKRADNSGTVSPVSGDEGFVQLGRPMLMAVSLADSIFDKLPKAWFIYLFIGVGVVLFVISCVGCIGATTRNGCCLTCVSLV*
Disordered Region (DISOPRED)
***RGCLECLLKLLNFLLTIVGLAMVGYGIYLFVEYKR**********************MLMAVSLADSIFDKLPKAWFIYLFIGVGVVLFVISCVGCIGATTRNGCCLTCVSLVL
Disordered Region (DISEMBL)
MACRGCLECLLKLLNFLLTIVGLAMVGYGIYLFVEYKRADNSGTVSPVSGDEGFVQLGRPMLMAVSLADSIFDKLPKAWFIYLFIGVGVVLFVISCVGCIGATTRNGCCLTCVSLVL
Disordered Region (DISPRO)
*ACRGCLECLLKLLNFLLTIVGLAMVGYGIYLFVEYKRAD************G*VQLGRPMLMAVSLADSIFDKLPKAWFIYLFIGVGVVLFVISCVGCIGATTRNGCCLTCVSLVL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MACRGCLECLLKLLNFLLTIVGLAMVGYGIYLFVEYKRADNSGTVSPVSGDEGFVQLGRPMLMAVSLADSIFDKLPKAWFIYLFIGVGVVLFVISCVGCIGATTRNGCCLTCVSLVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	117	2.2.26 [Sep-21-2011]
Q940P5	221	Tetraspanin-19 OS=Arabido	no	no	0.700	0.371	0.364	2e-11
Q93XY5	270	Tetraspanin-18 OS=Arabido	no	no	0.923	0.4	0.304	7e-09

>sp|Q940P5|TET19_ARATH Tetraspanin-19 OS=Arabidopsis thaliana GN=At2g20740 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 25/107 (23%)

Query: 4   RGCLECLLKLLNFLLTIVGLAMVGYGIYLFVEYKRADNSGTVSPVSGDEGFVQLGRPMLM 63
           R CL+ +LKL+N L+ +VG+AM+ Y ++L  +++                  Q+G     
Sbjct: 6   RSCLQSMLKLVNSLIGMVGIAMILYAVWLIRQWQE-----------------QMGN---- 44

Query: 64  AVSLADSIFDKLPKAWFIYLFIGVGVVLFVISCVGCIGATTRNGCCL 110
            +  ADS     P  WFIY F+G+G +L V++C G I A T NGCCL
Sbjct: 45  -LPFADS---DHPVPWFIYSFLGLGAILCVVTCAGHIAAETVNGCCL 87

May be involved in the regulation of cell differentiation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93XY5|TET18_ARATH Tetraspanin-18 OS=Arabidopsis thaliana GN=At2g20230 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 17/125 (13%)

Query: 3   CRGCLECLLKLLNFLLTIVGLAMVGYGIYLFVEYKRA---DNSGTVSPVSGDEGFVQLGR 59
           C       LK+LNF+   +G++++ Y I++  EY R    D   + S  SG E    +  
Sbjct: 6   CHVSFASTLKILNFVQAFIGVSIIIYSIWMLHEYSRHLPVDPPPSASSSSGTEIATSVSE 65

Query: 60  PMLMAVSLADSI----------FD----KLPKAWFIYLFIGVGVVLFVISCVGCIGATTR 105
           P+   +    SI          F+     LP  WFIY F+ VG+++ +++ +G I A   
Sbjct: 66  PLKNPIDFVASIILGSNGGDHGFNLRSLDLPAPWFIYSFMAVGILVCIVTFIGFIAAEAI 125

Query: 106 NGCCL 110
           NGCCL
Sbjct: 126 NGCCL 130

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
356497054	283	PREDICTED: uncharacterized protein LOC10	1.0	0.413	0.691	1e-43
255647653	283	unknown [Glycine max]	1.0	0.413	0.691	1e-43
356541380	283	PREDICTED: uncharacterized protein LOC10	1.0	0.413	0.683	1e-42
359474591	280	PREDICTED: uncharacterized protein LOC10	0.957	0.4	0.725	4e-42
357482319	294	GMFP4 [Medicago truncatula] gi|355512780	0.965	0.384	0.702	4e-42
357482323	289	GMFP4 [Medicago truncatula] gi|355512782	0.982	0.397	0.674	3e-41
449461537	279	PREDICTED: uncharacterized protein LOC10	0.974	0.408	0.701	2e-40
356511490	277	PREDICTED: uncharacterized protein LOC54	0.948	0.400	0.730	4e-39
224138040	280	predicted protein [Populus trichocarpa]	0.982	0.410	0.784	3e-38
358248102	277	uncharacterized protein LOC100793680 [Gl	0.948	0.400	0.704	5e-38

>gi|356497054|ref|XP_003517379.1| PREDICTED: uncharacterized protein LOC100791911 [Glycine max]

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/120 (69%), Positives = 101/120 (84%), Gaps = 3/120 (2%)

Query: 1   MACRGCLECLLKLLNFLLTIVGLAMVGYGIYLFVEYKRA---DNSGTVSPVSGDEGFVQL 57
           MACRGC ECLLKL NF+LT+ GLA+VGYGIYLFVE+ +A   DN+  +SPVS D   +QL
Sbjct: 1   MACRGCWECLLKLFNFILTLTGLAIVGYGIYLFVEFSKASDDDNTPAISPVSDDSALIQL 60

Query: 58  GRPMLMAVSLADSIFDKLPKAWFIYLFIGVGVVLFVISCVGCIGATTRNGCCLTCVSLVL 117
           GRP+LMAVSL++  FD LP+AWFIYLFIG+GVVLF+ISC GCIGA TRNGCCL+C S+++
Sbjct: 61  GRPVLMAVSLSNDFFDNLPRAWFIYLFIGIGVVLFLISCFGCIGAATRNGCCLSCYSILV 120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647653|gb|ACU24289.1| unknown [Glycine max]

 Score =  179 bits (455), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/120 (69%), Positives = 101/120 (84%), Gaps = 3/120 (2%)

Query: 1   MACRGCLECLLKLLNFLLTIVGLAMVGYGIYLFVEYKRA---DNSGTVSPVSGDEGFVQL 57
           MACRGC ECLLKL NF+LT+ GLA+VGYGIYLFVE+ +A   DN+  +SPVS D   +QL
Sbjct: 1   MACRGCWECLLKLFNFILTLTGLAIVGYGIYLFVEFSKASDDDNTPAISPVSDDSALIQL 60

Query: 58  GRPMLMAVSLADSIFDKLPKAWFIYLFIGVGVVLFVISCVGCIGATTRNGCCLTCVSLVL 117
           GRP+LMAVSL++  FD LP+AWFIYLFIG+GVVLF+ISC GCIGA TRNGCCL+C S+++
Sbjct: 61  GRPVLMAVSLSNDFFDNLPRAWFIYLFIGIGVVLFLISCFGCIGAATRNGCCLSCYSILV 120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541380|ref|XP_003539155.1| PREDICTED: uncharacterized protein LOC100815033 [Glycine max]

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/120 (68%), Positives = 99/120 (82%), Gaps = 3/120 (2%)

Query: 1   MACRGCLECLLKLLNFLLTIVGLAMVGYGIYLFVEYKRA---DNSGTVSPVSGDEGFVQL 57
           MACRGC ECLLKL NF+LT+ GLA+VGYGIYLFVE+ +A   DN   +SPVS D   +QL
Sbjct: 1   MACRGCWECLLKLFNFILTLTGLAIVGYGIYLFVEFSKASDDDNMPAISPVSDDSSLIQL 60

Query: 58  GRPMLMAVSLADSIFDKLPKAWFIYLFIGVGVVLFVISCVGCIGATTRNGCCLTCVSLVL 117
           GRP+LMAVSL++  FD LP+AWFIYLFIG+GVVLF+ISC GCIGA  RNGCCL+C S+++
Sbjct: 61  GRPVLMAVSLSNDFFDNLPRAWFIYLFIGIGVVLFLISCFGCIGAAARNGCCLSCYSILV 120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474591|ref|XP_002279170.2| PREDICTED: uncharacterized protein LOC100245417 [Vitis vinifera]

 Score =  175 bits (443), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 82/113 (72%), Positives = 96/113 (84%), Gaps = 1/113 (0%)

Query: 1   MACRGCLECLLKLLNFLLTIVGLAMVGYGIYLFVEYKRADNSG-TVSPVSGDEGFVQLGR 59
           MACRGCLECLLK+LNFLLT+VGLAMVGYGIYLFVEYK++     T+SPV GD   +QLGR
Sbjct: 1   MACRGCLECLLKILNFLLTLVGLAMVGYGIYLFVEYKKSSGETLTISPVMGDSDVIQLGR 60

Query: 60  PMLMAVSLADSIFDKLPKAWFIYLFIGVGVVLFVISCVGCIGATTRNGCCLTC 112
           P++MAV+L+ SI D LPKAWFIY F  +GV+LFVISC GC+GA TRNGCCL+C
Sbjct: 61  PVMMAVTLSSSILDNLPKAWFIYCFFAIGVILFVISCFGCVGAVTRNGCCLSC 113

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482319|ref|XP_003611445.1| GMFP4 [Medicago truncatula] gi|355512780|gb|AES94403.1| GMFP4 [Medicago truncatula]

 Score =  174 bits (442), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 85/121 (70%), Positives = 96/121 (79%), Gaps = 8/121 (6%)

Query: 3   CRGCLECLLKLLNFLLTIVGLAMVGYGIYLFVEYKRADNSGT--------VSPVSGDEGF 54
           CRG  ECLLKLLNF+LT+ GLA+VGYGIYL V + +A +           +SPVSGD   
Sbjct: 4   CRGFWECLLKLLNFILTVTGLAIVGYGIYLLVAFAKASDDDKPDISPTPDISPVSGDSAL 63

Query: 55  VQLGRPMLMAVSLADSIFDKLPKAWFIYLFIGVGVVLFVISCVGCIGATTRNGCCLTCVS 114
           +Q GRPMLMAVSL+D+IFDKLPKAWFIYLFIGVG VLFV+SC GCIGATTRNGCCL CVS
Sbjct: 64  IQFGRPMLMAVSLSDNIFDKLPKAWFIYLFIGVGAVLFVVSCFGCIGATTRNGCCLICVS 123

Query: 115 L 115
           L
Sbjct: 124 L 124

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482323|ref|XP_003611447.1| GMFP4 [Medicago truncatula] gi|355512782|gb|AES94405.1| GMFP4 [Medicago truncatula]

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 83/123 (67%), Positives = 97/123 (78%), Gaps = 8/123 (6%)

Query: 3   CRGCLECLLKLLNFLLTIVGLAMVGYGIYLFVEYKRADNSGT--------VSPVSGDEGF 54
           CRG  ECLLKLLNF+LT+ GLA+VGYGIYL V + +A +           +SPVSGD   
Sbjct: 4   CRGFWECLLKLLNFILTVTGLAIVGYGIYLLVAFAKASDDDKPDISPTPDISPVSGDSAL 63

Query: 55  VQLGRPMLMAVSLADSIFDKLPKAWFIYLFIGVGVVLFVISCVGCIGATTRNGCCLTCVS 114
           +Q GRPMLMAVSL+D+IFDKLPKAWFIYLFIGVG VLFV+SC GCIGATTRNGCCL C S
Sbjct: 64  IQFGRPMLMAVSLSDNIFDKLPKAWFIYLFIGVGAVLFVVSCFGCIGATTRNGCCLICYS 123

Query: 115 LVL 117
           +++
Sbjct: 124 ILV 126

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461537|ref|XP_004148498.1| PREDICTED: uncharacterized protein LOC101203030 [Cucumis sativus] gi|449527337|ref|XP_004170668.1| PREDICTED: uncharacterized protein LOC101226567 [Cucumis sativus]

 Score =  169 bits (427), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 80/114 (70%), Positives = 92/114 (80%)

Query: 1   MACRGCLECLLKLLNFLLTIVGLAMVGYGIYLFVEYKRADNSGTVSPVSGDEGFVQLGRP 60
           MACRGC ECLLKLLNF L+++GLAMVGYGIYL VEY ++ +      +SGD   VQLGRP
Sbjct: 1   MACRGCFECLLKLLNFFLSLLGLAMVGYGIYLLVEYLQSHSDVPGPSLSGDHDLVQLGRP 60

Query: 61  MLMAVSLADSIFDKLPKAWFIYLFIGVGVVLFVISCVGCIGATTRNGCCLTCVS 114
           MLMAVSL+ SIFD LPKAWFIYLFI  GV +FV+SC GCIGA TR+GCCL+C S
Sbjct: 61  MLMAVSLSSSIFDNLPKAWFIYLFIATGVTIFVVSCFGCIGAATRSGCCLSCYS 114

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511490|ref|XP_003524459.1| PREDICTED: uncharacterized protein LOC547883 [Glycine max]

 Score =  164 bits (416), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 84/115 (73%), Positives = 93/115 (80%), Gaps = 4/115 (3%)

Query: 1   MACRGCLECLLKLLNFLLTIVGLAMVGYGIYLFVEY-KRADNSGTVSPVSGDEGFVQLGR 59
           MACRGC ECLLKLLNF+LT+ GLAMVGYGIYLFVEY K  DN+ TV     D+  VQLGR
Sbjct: 1   MACRGCWECLLKLLNFILTLAGLAMVGYGIYLFVEYNKTPDNTLTVG---DDQTLVQLGR 57

Query: 60  PMLMAVSLADSIFDKLPKAWFIYLFIGVGVVLFVISCVGCIGATTRNGCCLTCVS 114
           PML+AVSL++S  D LPKAWFIYLFIG+G VLFVISC GCI A TRNGCCL+  S
Sbjct: 58  PMLVAVSLSNSFLDDLPKAWFIYLFIGIGAVLFVISCFGCIAALTRNGCCLSFYS 112

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138040|ref|XP_002326503.1| predicted protein [Populus trichocarpa] gi|222833825|gb|EEE72302.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 91/116 (78%), Positives = 101/116 (87%), Gaps = 1/116 (0%)

Query: 1   MACRGCLECLLKLLNFLLTIVGLAMVGYGIYLFVEYKRAD-NSGTVSPVSGDEGFVQLGR 59
           MAC+GCLECLLKLLNFLLT+VGLAM+GYGIYLFVEY+RAD N G VS  S  +G   LGR
Sbjct: 1   MACKGCLECLLKLLNFLLTLVGLAMIGYGIYLFVEYRRADDNVGLVSTPSDGQGLTLLGR 60

Query: 60  PMLMAVSLADSIFDKLPKAWFIYLFIGVGVVLFVISCVGCIGATTRNGCCLTCVSL 115
           PML+AVSL++SI DKLPKAWFIYLFI VGV+LFVISC GCIGA TRNGCCLTC S+
Sbjct: 61  PMLIAVSLSESILDKLPKAWFIYLFIAVGVILFVISCFGCIGAATRNGCCLTCYSV 116

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248102|ref|NP_001240069.1| uncharacterized protein LOC100793680 [Glycine max] gi|255641974|gb|ACU21254.1| unknown [Glycine max]

 Score =  161 bits (407), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 81/115 (70%), Positives = 92/115 (80%), Gaps = 4/115 (3%)

Query: 1   MACRGCLECLLKLLNFLLTIVGLAMVGYGIYLFVEYKRA-DNSGTVSPVSGDEGFVQLGR 59
           MACRGC ECLLKLLNF+LT+ GLAMVGYGIYLFVEY +A DN+   S    D+  VQ GR
Sbjct: 1   MACRGCWECLLKLLNFILTLAGLAMVGYGIYLFVEYNKAWDNTLNFS---EDKTEVQFGR 57

Query: 60  PMLMAVSLADSIFDKLPKAWFIYLFIGVGVVLFVISCVGCIGATTRNGCCLTCVS 114
           PML+ VSL++S  D+LPKAWFIYLFIG+G VLFVISC GCI A TRNGCCL+  S
Sbjct: 58  PMLVVVSLSNSFLDELPKAWFIYLFIGIGAVLFVISCFGCIAALTRNGCCLSFYS 112

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
TAIR|locus:2033718	280	TOM2A "tobamovirus multiplicat	1.0	0.417	0.601	1.9e-35
TAIR|locus:2038997	270	AT2G20230 [Arabidopsis thalian	0.358	0.155	0.428	2.1e-09
TAIR|locus:2051348	221	AT2G20740 "AT2G20740" [Arabido	0.299	0.158	0.571	3.2e-07
RGD|1304740	95	Tspan9 "tetraspanin 9" [Rattus	0.299	0.368	0.371	9.2e-05
UNIPROTKB|H0Y8W4	87	TSPAN5 "Tetraspanin-5" [Homo s	0.222	0.298	0.461	0.00012
UNIPROTKB|J9NS67	241	TSPAN1 "Uncharacterized protei	0.307	0.149	0.388	0.00042
UNIPROTKB|P19397	219	CD53 "Leukocyte surface antige	0.401	0.214	0.297	0.00071
UNIPROTKB|E2RPE6	295	TSPAN1 "Uncharacterized protei	0.307	0.122	0.388	0.0008

TAIR|locus:2033718 TOM2A "tobamovirus multiplication 2A" [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 71/118 (60%), Positives = 85/118 (72%)

Query:     1 MACRGCXXXXXXXXXXXXTIVGLAMVGYGIYLFVEYKRA-DNSGTVSPVSGDEGFVQLGR 59
             MACRGC             + GL M+GYGIYLFVEYKR  DNS T    +GD+ +V  GR
Sbjct:     1 MACRGCLECLLKLLNFLLAVAGLGMIGYGIYLFVEYKRVTDNSVTFDLTNGDQSYVSFGR 60

Query:    60 PMLMAVSLADSIFDKLPKAWFIYLFIGVGVVLFVISCVGCIGATTRNGCCLTCVSLVL 117
             P+LMAVSL+ +IFD LPKAWFIYLFIG+GV LFVISC GC+G  +R+ CCL+C SL+L
Sbjct:    61 PILMAVSLSSNIFDNLPKAWFIYLFIGIGVALFVISCCGCVGTCSRSVCCLSCYSLLL 118

GO:0005576 "extracellular region" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016020 "membrane" evidence=ISS

GO:0046786 "viral replication complex formation and maintenance" evidence=IMP

GO:0005773 "vacuole" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2038997 AT2G20230 [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query:    75 LPKAWFIYLFIGVGVVLFVISCVGCIGATTRNGCCLTCVSLV 116
             LP  WFIY F+ VG+++ +++ +G I A   NGCCL   S++
Sbjct:    95 LPAPWFIYSFMAVGILVCIVTFIGFIAAEAINGCCLCFYSIL 136

GO:0016021 "integral to membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2051348 AT2G20740 "AT2G20740" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 3.2e-07, P = 3.2e-07
 Identities = 20/35 (57%), Positives = 25/35 (71%)

Query:    76 PKAWFIYLFIGVGVVLFVISCVGCIGATTRNGCCL 110
             P  WFIY F+G+G +L V++C G I A T NGCCL
Sbjct:    53 PVPWFIYSFLGLGAILCVVTCAGHIAAETVNGCCL 87

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

RGD|1304740 Tspan9 "tetraspanin 9" [Rattus norvegicus (taxid:10116)]

 Score = 68 (29.0 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query:    83 LFIGVGVVLFVISCVGCIGATTRNGCCLTCVSLVL 117
             L I +G ++ V   +GC+GA   N C L    +VL
Sbjct:    44 LVIAIGTIVMVTGFLGCLGAIKENKCLLLSFFIVL 78

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|H0Y8W4 TSPAN5 "Tetraspanin-5" [Homo sapiens (taxid:9606)]

 Score = 69 (29.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query:    81 IYLFIGVGVVLFVISCVGCIGATTRN 106
             ++LF+ VG V+F++   GCIGA   N
Sbjct:    53 VWLFLVVGGVMFILGFAGCIGALREN 78

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|J9NS67 TSPAN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 77 (32.2 bits), Expect = 0.00042, Sum P(2) = 0.00042
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query:    82 YLFIGVGVVLFVISCVGCIGATTRNGCCLTCVSLVL 117
             Y  I  G +LF +  +GC GA + N C L    L+L
Sbjct:    58 YFLIAAGAILFALGFLGCYGAHSENKCALMMFFLIL 93

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P19397 CD53 "Leukocyte surface antigen CD53" [Homo sapiens (taxid:9606)]

 Score = 74 (31.1 bits), Expect = 0.00071, Sum P(2) = 0.00071
 Identities = 14/47 (29%), Positives = 26/47 (55%)

Query:    71 IFDKLPKAWFIYLFIGVGVVLFVISCVGCIGATTRNGCCLTCVSLVL 117
             +F  LP      +F+ VG ++ V++ +GC+G+   N C L    ++L
Sbjct:    43 LFHNLPSLTLGNVFVIVGSIIMVVAFLGCMGSIKENKCLLMSFFILL 89

GO:0016021 "integral to membrane" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0001772 "immunological synapse" evidence=IDA

GO:0005886 "plasma membrane" evidence=TAS

GO:0007165 "signal transduction" evidence=NAS

UNIPROTKB|E2RPE6 TSPAN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 77 (32.2 bits), Expect = 0.00080, Sum P(2) = 0.00080
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query:    82 YLFIGVGVVLFVISCVGCIGATTRNGCCLTCVSLVL 117
             Y  I  G +LF +  +GC GA + N C L    L+L
Sbjct:    58 YFLIAAGAILFALGFLGCYGAHSENKCALMMFFLIL 93

GO:0016021 "integral to membrane" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	117
pfam00335	221	pfam00335, Tetraspannin, Tetraspanin family	6e-07

>gnl|CDD|215864 pfam00335, Tetraspannin, Tetraspanin family

 Score = 45.5 bits (108), Expect = 6e-07
 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 29/112 (25%)

Query: 6   CLECLLKLLNFLLTIVGLAMVGYGIYLFVEYKRADNSGTVSPVSGDEGFVQLGRPMLMAV 65
           CL+ LL LLN L  ++GLA++  GI+L V                               
Sbjct: 1   CLKYLLFLLNLLFLLLGLALLAVGIWLLV-----------------------------IA 31

Query: 66  SLADSIFDKLPKAWFIYLFIGVGVVLFVISCVGCIGATTRNGCCLTCVSLVL 117
               +I           L I +GV++ ++  +GC GA   + C L    ++L
Sbjct: 32  KDYLAIALNDSIRALYILIIVLGVIILLVGFLGCCGAIKESRCLLLTYFILL 83

Length = 221

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	117
KOG3882	237	consensus Tetraspanin family integral membrane pro	99.71
PF00335	221	Tetraspannin: Tetraspanin family RDS_ROM1 subfamil	99.09

>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]

Probab=99.71  E-value=2.1e-17  Score=122.64  Aligned_cols=85  Identities=32%  Similarity=0.569  Sum_probs=71.3

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHhheeEEecccccCCCCcCCCCCCCcccccCcchhhhhhhhhhhcccCChhHHHH
Q 038963            3 CRGCLECLLKLLNFLLTIVGLAMVGYGIYLFVEYKRADNSGTVSPVSGDEGFVQLGRPMLMAVSLADSIFDKLPKAWFIY   82 (117)
Q Consensus         3 c~~~lk~~L~~~N~lf~i~G~~li~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (117)
                      |.+|+||.++.+|+++|++|++++++|+|++.++....+....             .              .+.+   ++
T Consensus         5 ~~~~~K~~lf~~N~~~~l~G~~ll~~giw~~~~~~~~~~~~~~-------------~--------------~~~~---~~   54 (237)
T KOG3882|consen    5 GSSCLKYLLFLLNLLFWLLGLLLLAVGIWLLADKGFLSSLLES-------------D--------------FLVP---AY   54 (237)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHhhhheeEeccchhhcccc-------------c--------------hhcc---hh
Confidence            4589999999999999999999999999999998765532210             0              0122   37


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhcC
Q 038963           83 LFIGVGVVLFVISCVGCIGATTRNGCCLTCVSLVL  117 (117)
Q Consensus        83 ~li~~G~~~~~v~~~Gc~Ga~~en~~lL~~y~~~l  117 (117)
                      +++++|++++++|++||+||.|||||+|.+|++++
T Consensus        55 ili~~G~v~~~v~flGc~Ga~~es~~lL~~y~~~l   89 (237)
T KOG3882|consen   55 ILIAVGGVVFLVGFLGCCGALRESRCLLLSYFILL   89 (237)
T ss_pred             hhhhhhHHHHHHHHhhhhhhHhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999998764

>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []

Probab=99.09  E-value=1.6e-11  Score=87.31  Aligned_cols=82  Identities=34%  Similarity=0.699  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhheeEEecccccCCCCcCCCCCCCcccccCcchhhhhhhhhhhcccCChhHHHHHHH
Q 038963            6 CLECLLKLLNFLLTIVGLAMVGYGIYLFVEYKRADNSGTVSPVSGDEGFVQLGRPMLMAVSLADSIFDKLPKAWFIYLFI   85 (117)
Q Consensus         6 ~lk~~L~~~N~lf~i~G~~li~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li   85 (117)
                      |+|+.++++|+++++.|++++++|+|.+...+......+                              .......++++
T Consensus         1 c~k~~l~~~n~l~~l~g~~li~~g~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~i   50 (221)
T PF00335_consen    1 CLKYILFFLNVLFLLLGLALIGVGIWLLVNNQYLSEFSS------------------------------SFISYVIIILI   50 (221)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc------------------------------cchhHHHHHHH
Confidence            789999999999999999999999999422111110000                              00011236778


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccchhhhhhhcC
Q 038963           86 GVGVVLFVISCVGCIGATTRNGCCLTCVSLVL  117 (117)
Q Consensus        86 ~~G~~~~~v~~~Gc~Ga~~en~~lL~~y~~~l  117 (117)
                      .+|.++++++++||+|+.||||+++..|.+++
T Consensus        51 ~~G~~~~~~~~~G~~~~~~~~~~~l~~y~~~~   82 (221)
T PF00335_consen   51 FIGIFILIISFLGCIGACRKNRCLLIIYIILL   82 (221)
T ss_dssp             --------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhcCcccccccccch
Confidence            89999999999999999999999999998753

CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00