Citrus Sinensis ID: 038974

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130----
Protein Sequence
MLPPGVVFNPTEEDRVSYLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQMYFTHLRSRYHSEMVYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYYKKDVKTQWLMTCTHFCTITSIRHEN
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHcccccccccccEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccEEEEEEccEEcccccccccEEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHcccccccccEEEEEEcccccccccHHHHccccccEEEEcccccccccccccccccccEEEccccccccccccccEEEEEEEEEEEcccccccEEEEEEEccccccccccc
Coil and Loop (DISEMBL)
mlppgvvfnpteedRVSYLIGKvsghtdgggsyfiqdiqlcehEPWELLSLAHDCCHQQMYFTHLRSRYHSEMVYREAVCGFWKnlglssyindkggkpvaVKKSLNYYKKDVKTQWLMTCTHFCTITSIRHEN
Flexible Loop (DISEMBL)
mlppgvvfnpteEDRVSYLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQMYFTHLRSRYHSEMVYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYYKkdvktqwlmTCTHFCTITSIRHEN
Low Complexity Region (SEG)
MLPPGVVFNPTEEDRVSYLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQMYFTHLRSRYHSEMVYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYYKKDVKTQWLMTCTHFCTITSIRHEN
Disordered region (IsUnstruct)
**************RVSYLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQMYFTHLRSRYHSEMVYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYYKKDVKTQWLMTCTHFCTITSI****
Disordered Region (DISOPRED)
MLPPGVVFNPTEEDRVSYLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQMYFTHLRSRYHSEMVYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYYKKDVKTQWLMTCT************
Disordered Region (DISEMBL)
MLPPGVVFNPTEEDRVSYLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQMYFTHLRSRYHSEMVYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYYKKDVKTQWLMTCTHFCTITSIRHEN
Disordered Region (DISPRO)
*LPPGVVFNPTEEDRVSYLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQMYFTHLRSRYHSEMVYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYYKKDVKTQWLMTCTHFCTI*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLPPGVVFNPTEEDRVSYLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQMYFTHLRSRYHSEMVYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYYKKDVKTQWLMTCTHFCTITSIRHEN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	134	2.2.26 [Sep-21-2011]
Q9S851	334	Protein CUP-SHAPED COTYLE	yes	no	0.865	0.347	0.32	1e-09
Q8GY42	323	NAC transcription factor	no	no	0.873	0.362	0.333	8e-09
A2YMR0	425	NAC transcription factor	N/A	no	0.865	0.272	0.333	1e-08
Q7EZT1	276	NAC domain-containing pro	no	no	0.858	0.416	0.306	2e-08
Q8H4S4	425	NAC transcription factor	no	no	0.865	0.272	0.325	2e-08
Q93VY3	297	NAC domain-containing pro	no	no	0.820	0.370	0.356	4e-08
O49255	268	NAC transcription factor	no	no	0.858	0.429	0.322	5e-08
Q9ZVH0	418	Protein FEZ OS=Arabidopsi	no	no	0.873	0.279	0.325	5e-08
Q9LDY8	317	NAC domain-containing pro	no	no	0.850	0.359	0.352	6e-08
Q39013	289	NAC domain-containing pro	no	no	0.843	0.391	0.352	8e-08

>sp|Q9S851|NAC31_ARATH Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thaliana GN=NAC031 PE=1 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 9/125 (7%)

Query: 2   LPPGVVFNPTEEDRVSYLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQMY 61
           LPPG  F+PT+E+ +++ +     H    G + I ++ L   EPWEL  +A     ++ Y
Sbjct: 22  LPPGFRFHPTDEELITFYLASKIFHGGLSGIH-ISEVDLNRCEPWELPEMA-KMGEREWY 79

Query: 62  FTHLRSRYHSEMVY--REAVCGFWKNLGLSSYI-NDKGGKPVAVKKSLNYYK----KDVK 114
           F  LR R +   +   R    G+WK  G    + +  GG+ V +KK+L +YK    + +K
Sbjct: 80  FYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVFSGGGGQLVGMKKTLVFYKGRAPRGLK 139

Query: 115 TQWLM 119
           T+W+M
Sbjct: 140 TKWVM 144

Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY42|NAC25_ARATH NAC transcription factor 25 OS=Arabidopsis thaliana GN=NAC025 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 6/123 (4%)

Query: 2   LPPGVVFNPTEEDRVSYLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQMY 61
           LPPG  F+PT+E+ V + + K +       S  I +I L + +PWEL S A    H+  +
Sbjct: 16  LPPGFRFHPTDEELVVHYLKKKADSVPLPVS-IIAEIDLYKFDPWELPSKASFGEHEWYF 74

Query: 62  FTHLRSRYHSEM-VYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYY----KKDVKTQ 116
           F+    +Y + +   R A  G+WK  G    I       V VKK+L +Y     K +KT 
Sbjct: 75  FSPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTCNSHKVGVKKALVFYGGKPPKGIKTD 134

Query: 117 WLM 119
           W+M
Sbjct: 135 WIM 137

Transcription factor of the NAC family. May be associated with anther development and pollen production.

Arabidopsis thaliana (taxid: 3702)

>sp|A2YMR0|NAC10_ORYSI NAC transcription factor ONAC010 OS=Oryza sativa subsp. indica GN=ONAC010 PE=3 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/126 (33%), Positives = 62/126 (49%), Gaps = 10/126 (7%)

Query: 2   LPPGVVFNPTEEDRVSYLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQMY 61
           LPPG  F+PT+E+ V + + K +       +  I ++ L + +PWEL   A +   Q+ Y
Sbjct: 29  LPPGFRFHPTDEELVVHYLKKKAASVPLPVT-IIAEVDLYKFDPWELPEKA-NFGEQEWY 86

Query: 62  FTHLRSRYHSEMVY--REAVCGFWKNLGLSSYINDKGG--KPVAVKKSLNYYK----KDV 113
           F   R R +       R A  G+WK  G    I   G   + V VKK+L +Y+    K V
Sbjct: 87  FFSPRDRKYPNGARPNRAATSGYWKATGTDKPIMASGSTREKVGVKKALVFYRGKPPKGV 146

Query: 114 KTQWLM 119
           KT W+M
Sbjct: 147 KTNWIM 152

Transcription factor of the NAC family associated with male fertility.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q7EZT1|NAC67_ORYSJ NAC domain-containing protein 67 OS=Oryza sativa subsp. japonica GN=NAC67 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 9/124 (7%)

Query: 2   LPPGVVFNPTEEDRVS-YLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQM 60
           LPPG  F+PT+E+ V+ YL  + +G         I ++ L  H+PW+L   A     +  
Sbjct: 17  LPPGFRFHPTDEELVAHYLCPRAAGR--AAPVPIIAELDLYRHDPWDLPHRALFGRREWY 74

Query: 61  YFTHLRSRY-HSEMVYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYY----KKDVKT 115
           +FT    +Y +     R A  G+WK  G    +    G+   +KK+L +Y     + VKT
Sbjct: 75  FFTPRDRKYPNGSRPNRAAASGYWKATGADKPVL-HNGRTAGIKKALVFYHGKPPRGVKT 133

Query: 116 QWLM 119
           +W+M
Sbjct: 134 EWIM 137

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8H4S4|NAC10_ORYSJ NAC transcription factor ONAC010 OS=Oryza sativa subsp. japonica GN=ONAC010 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 10/126 (7%)

Query: 2   LPPGVVFNPTEEDRVSYLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQMY 61
           LPPG  F+PT+E+ V + + K +       +  I ++ L + +PW+L   A +   Q+ Y
Sbjct: 29  LPPGFRFHPTDEELVVHYLKKKAASVPLPVT-IIAEVDLYKFDPWDLPEKA-NFGEQEWY 86

Query: 62  FTHLRSRYHSEMVY--REAVCGFWKNLGLSSYINDKGG--KPVAVKKSLNYYK----KDV 113
           F   R R +       R A  G+WK  G    I   G   + V VKK+L +Y+    K V
Sbjct: 87  FFSPRDRKYPNGARPNRAATSGYWKATGTDKPIMSSGSTREKVGVKKALVFYRGKPPKGV 146

Query: 114 KTQWLM 119
           KT W+M
Sbjct: 147 KTNWIM 152

Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q93VY3|NAC72_ARATH NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 63/129 (48%), Gaps = 19/129 (14%)

Query: 2   LPPGVVFNPTEED-RVSYLIGKVSGHTDGGGSYF----IQDIQLCEHEPWELLSLAHDCC 56
           LPPG  F PT+E+  V YL  KV+G+      +F    I DI L + +PW+L S A    
Sbjct: 14  LPPGFRFYPTDEELLVQYLCRKVAGY------HFSLQVIGDIDLYKFDPWDLPSKAL-FG 66

Query: 57  HQQMYFTHLRSRYH--SEMVYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYYK---- 110
            ++ YF   R R +       R A  G+WK  G    I    G+ V +KK+L +Y     
Sbjct: 67  EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIT-ADGRRVGIKKALVFYAGKAP 125

Query: 111 KDVKTQWLM 119
           K  KT W+M
Sbjct: 126 KGTKTNWIM 134

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|O49255|NAC29_ARATH NAC transcription factor 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 9/124 (7%)

Query: 2   LPPGVVFNPTEEDRVSYLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQMY 61
           LPPG  F+PT+E+ + Y +   +       S  I ++ + + +PW+L     +    + Y
Sbjct: 9   LPPGFRFHPTDEELIVYYLRNQTMSKPCPVS-IIPEVDIYKFDPWQLPEKT-EFGENEWY 66

Query: 62  FTHLRSRYHSEMVY--REAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYYK----KDVKT 115
           F   R R +   V   R AV G+WK  G    I+  G   V VKK+L +YK    K +KT
Sbjct: 67  FFSPRERKYPNGVRPNRAAVSGYWKATGTDKAIH-SGSSNVGVKKALVFYKGRPPKGIKT 125

Query: 116 QWLM 119
            W+M
Sbjct: 126 DWIM 129

May function in the transition between active cell division and cell expansion.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVH0|FEZ_ARATH Protein FEZ OS=Arabidopsis thaliana GN=FEZ PE=2 SV=1

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 9/126 (7%)

Query: 1   MLPPGVVFNPTEEDRVSYLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQM 60
           +L PG  F+PT+E+ VS+ + +   H +      I+ + + +++PW+L   A     ++ 
Sbjct: 15  VLLPGFRFHPTDEELVSFYLKRKVQH-NPLSIELIRQLDIYKYDPWDLPKFAM-TGEKEW 72

Query: 61  YFTHLRSR--YHSEMVYREAVCGFWKNLGLSSYI-NDKGGKPVAVKKSLNYYK----KDV 113
           YF   R R   +S    R    GFWK  G    I + +G K + +KKSL +YK    K V
Sbjct: 73  YFYCPRDRKYRNSSRPNRVTGAGFWKATGTDRPIYSSEGNKCIGLKKSLVFYKGRAAKGV 132

Query: 114 KTQWLM 119
           KT W+M
Sbjct: 133 KTDWMM 138

Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LDY8|NAC55_ARATH NAC domain-containing protein 55 OS=Arabidopsis thaliana GN=NAC055 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 61/125 (48%), Gaps = 11/125 (8%)

Query: 2   LPPGVVFNPTEED-RVSYLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQM 60
           LPPG  F PT+E+  V YL  K +GH        I +I L + +PW L S A     ++ 
Sbjct: 14  LPPGFRFYPTDEELMVEYLCRKAAGHDF--SLQLIAEIDLYKFDPWVLPSKAL-FGEKEW 70

Query: 61  YFTHLRSRYH--SEMVYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYY----KKDVK 114
           YF   R R +       R A  G+WK  G    I+ +G + V +KK+L +Y     K  K
Sbjct: 71  YFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVISTEGRR-VGIKKALVFYIGKAPKGTK 129

Query: 115 TQWLM 119
           T W+M
Sbjct: 130 TNWIM 134

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39013|NAC2_ARATH NAC domain-containing protein 2 OS=Arabidopsis thaliana GN=NAC002 PE=2 SV=2

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 61/125 (48%), Gaps = 12/125 (9%)

Query: 2   LPPGVVFNPTEEDRVS-YLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQM 60
           LPPG  F+PT+E+ V  YL  K +  +       I +I L +++PWEL  LA     ++ 
Sbjct: 7   LPPGFRFHPTDEELVMHYLCRKCASQSI--AVPIIAEIDLYKYDPWELPGLAL-YGEKEW 63

Query: 61  YFTHLRSRYHSE--MVYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYY----KKDVK 114
           YF   R R +       R A  G+WK  G    I     KPV +KK+L +Y     K  K
Sbjct: 64  YFFSPRDRKYPNGSRPNRSAGSGYWKATGADKPIGLP--KPVGIKKALVFYAGKAPKGEK 121

Query: 115 TQWLM 119
           T W+M
Sbjct: 122 TNWIM 126

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
255565689	240	conserved hypothetical protein [Ricinus	0.880	0.491	0.351	5e-11
357124313	346	PREDICTED: protein CUP-SHAPED COTYLEDON	0.873	0.338	0.344	1e-09
242042920	343	hypothetical protein SORBIDRAFT_02g00262	0.850	0.332	0.330	1e-08
414883497	358	TPA: putative NAC domain transcription f	0.850	0.318	0.330	1e-08
295913218	176	transcription factor [Lycoris longituba]	0.880	0.670	0.32	1e-08
219394442	335	CUP-SHAPED COTYLEDON3 [Cardamine hirsuta	0.947	0.379	0.357	1e-08
194704192	282	unknown [Zea mays] gi|413917020|gb|AFW56	0.865	0.411	0.317	2e-08
323388649	275	NAC transcription factor [Zea mays]	0.865	0.421	0.317	2e-08
357111127	279	PREDICTED: NAC domain-containing protein	0.858	0.412	0.330	2e-08
357466597	358	NAC domain protein [Medicago truncatula]	0.858	0.321	0.357	2e-08

>gi|255565689|ref|XP_002523834.1| conserved hypothetical protein [Ricinus communis] gi|223536922|gb|EEF38560.1| conserved hypothetical protein [Ricinus communis]

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 61/128 (47%), Gaps = 10/128 (7%)

Query: 2   LPPGVVFNPTEEDRVS-YLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCH--- 57
           LPPG  F PTEE+ VS YL+ K+ G      +  I  I +C  EPWEL  LA + C    
Sbjct: 4   LPPGFRFYPTEEELVSFYLLNKLEGKRQERLNQVIPAIDICSTEPWELPKLAGELCQGDT 63

Query: 58  -QQMYFTHLRSR-YHSEMVYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYYKKDV-- 113
            Q  +FT  + R        R    G+WK  G   Y+     + + VKK++ +YK     
Sbjct: 64  EQWFFFTPRQEREARGGRPSRTTASGYWKATGSPGYVYSSDNRVIGVKKTMVFYKGKAPT 123

Query: 114 --KTQWLM 119
             KT+W M
Sbjct: 124 GRKTKWKM 131

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357124313|ref|XP_003563845.1| PREDICTED: protein CUP-SHAPED COTYLEDON 1-like [Brachypodium distachyon]

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 8/125 (6%)

Query: 2   LPPGVVFNPTEEDRVSYLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQMY 61
           LPPG  F+PT+E+ +SY + +     +  G+  I +I L + EPWEL   A     ++ Y
Sbjct: 14  LPPGFRFHPTDEELISYYLARKVADVNFSGARAIAEIDLNKCEPWELPDKAK-MGEKEWY 72

Query: 62  FTHLRSRYHSEMVY--REAVCGFWKNLGLSSYIND-KGGKPVAVKKSLNYYK----KDVK 114
           F  LR R +   +   R    G+WK  G    I   + G  V +KK+L +Y+    K  K
Sbjct: 73  FYSLRDRKYPTGLRTNRATGAGYWKATGKDREIRSARTGALVGMKKTLVFYRGRAPKGAK 132

Query: 115 TQWLM 119
           TQW+M
Sbjct: 133 TQWVM 137

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242042920|ref|XP_002459331.1| hypothetical protein SORBIDRAFT_02g002620 [Sorghum bicolor] gi|241922708|gb|EER95852.1| hypothetical protein SORBIDRAFT_02g002620 [Sorghum bicolor]

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 13/127 (10%)

Query: 4   PGVVFNPTEEDRVS-YLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQMYF 62
           PG  F+PT+E+ V+ YL  KV+G         I+D  + +H+PW+L   +     ++ YF
Sbjct: 31  PGFRFHPTDEELVTFYLRRKVAGKRLS--IEIIKDFDIYKHDPWDLPKSSSILGEKEWYF 88

Query: 63  THLRSRYHSEMVYREAV--CGFWKNLGLS----SYINDKGGKPVAVKKSLNYYK----KD 112
             LR R +   +    V   GFWK  G+     S  + + G P+ +KKSL +Y+    K 
Sbjct: 89  FCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIHSAASGRAGDPIGLKKSLVFYRGSAGKG 148

Query: 113 VKTQWLM 119
            KT+W+M
Sbjct: 149 TKTEWMM 155

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414883497|tpg|DAA59511.1| TPA: putative NAC domain transcription factor superfamily protein [Zea mays]

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 13/127 (10%)

Query: 4   PGVVFNPTEEDRVS-YLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQMYF 62
           PG  F+PT+E+ V+ YL  KV+G         I+D  + +H+PW+L   +     ++ YF
Sbjct: 40  PGFRFHPTDEELVTFYLRRKVAGKRLT--IEIIKDFDIYKHDPWDLPKSSSISGEKEWYF 97

Query: 63  THLRSRYHSEMVYREAV--CGFWKNLGLS----SYINDKGGKPVAVKKSLNYYK----KD 112
             LR R +   +    V   GFWK  G+     S  + + G P+ +KKSL +Y+    K 
Sbjct: 98  FCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIHSAASGRAGDPIGLKKSLVFYRGSAGKG 157

Query: 113 VKTQWLM 119
            KT+W+M
Sbjct: 158 TKTEWMM 164

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295913218|gb|ADG57867.1| transcription factor [Lycoris longituba]

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)

Query: 1   MLPPGVVFNPTEEDRVSYLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQM 60
           MLPPG  F+PT+E+ V Y + +  G  +      I ++ L +++PW+L   A     +  
Sbjct: 13  MLPPGFRFHPTDEELVVYYLCRKVGKQNLPVP-IIAEVDLYKYDPWDLPEKALFGQREWY 71

Query: 61  YFTHLRSRY-HSEMVYREAVCGFWKNLGLSSYINDKGG-KPVAVKKSLNYY----KKDVK 114
           +FTH   +Y +     R A  G+WK  G    +  KG  +P+ +KK+L +Y     K +K
Sbjct: 72  FFTHRDRKYPNGSRPNRAAGRGYWKATGADKPVVPKGANRPLGIKKALVFYHGKAPKGIK 131

Query: 115 TQWLM 119
           T W+M
Sbjct: 132 TDWIM 136

Source: Lycoris longituba

Species: Lycoris longituba

Genus: Lycoris

Family: Amaryllidaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219394442|gb|ACL14365.1| CUP-SHAPED COTYLEDON3 [Cardamine hirsuta]

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 71/140 (50%), Gaps = 13/140 (9%)

Query: 2   LPPGVVFNPTEEDRVS-YLIGKVSGHTDGGG-SYFIQDIQLCEHEPWELLSLAHDCCHQQ 59
           LPPG  F+PT+E+ +S YL  KV    DGG     I ++ L   EPWEL  +A     ++
Sbjct: 22  LPPGFRFHPTDEELISFYLASKV---FDGGLCGIHITEVDLNRCEPWELPEMA-KMGEKE 77

Query: 60  MYFTHLRSRYHSEMVY--REAVCGFWKNLGLSSYI-NDKGGKPVAVKKSLNYYK----KD 112
            YF  LR R +   +   R    G+WK  G    +    GG+ V +KK+L +YK    + 
Sbjct: 78  WYFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVFGSGGGQLVGMKKTLVFYKGRAPRG 137

Query: 113 VKTQWLMTCTHFCTITSIRH 132
           +KT+W+M      T  S RH
Sbjct: 138 LKTKWVMHEYRLETDLSHRH 157

Source: Cardamine hirsuta

Species: Cardamine hirsuta

Genus: Cardamine

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194704192|gb|ACF86180.1| unknown [Zea mays] gi|413917020|gb|AFW56952.1| putative NAC domain transcription factor superfamily protein [Zea mays]

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 10/126 (7%)

Query: 2   LPPGVVFNPTEEDRV-SYLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCC-HQQ 59
           +PPG  F+P +++ V  YL+ K+SGH    G+  + D+ L + EPW+L   A  C   ++
Sbjct: 12  MPPGFRFHPRDDELVMDYLLQKLSGHGHHAGAAIVVDVDLNKCEPWDLPDSA--CVGGKE 69

Query: 60  MYFTHLRSRYHS--EMVYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYYK----KDV 113
            YF  LR R ++  +   R    G+WK  G    +   G   V ++K+L +Y+    +  
Sbjct: 70  WYFFSLRDRKYATGQRTNRATHSGYWKATGKDRAVVAGGEVAVGMRKTLVFYRGRAPRGK 129

Query: 114 KTQWLM 119
           KT+W+M
Sbjct: 130 KTEWVM 135

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|323388649|gb|ADX60129.1| NAC transcription factor [Zea mays]

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 10/126 (7%)

Query: 2   LPPGVVFNPTEEDRV-SYLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCC-HQQ 59
           +PPG  F+P +++ V  YL+ K+SGH    G+  + D+ L + EPW+L   A  C   ++
Sbjct: 5   MPPGFRFHPRDDELVMDYLLQKLSGHGHHAGAAIVVDVDLNKCEPWDLPDSA--CVGGKE 62

Query: 60  MYFTHLRSRYHS--EMVYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYYK----KDV 113
            YF  LR R ++  +   R    G+WK  G    +   G   V ++K+L +Y+    +  
Sbjct: 63  WYFFSLRDRKYATGQRTNRATHSGYWKATGKDRAVVAGGEVAVGMRKTLVFYRGRAPRGK 122

Query: 114 KTQWLM 119
           KT+W+M
Sbjct: 123 KTEWVM 128

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357111127|ref|XP_003557366.1| PREDICTED: NAC domain-containing protein 67-like [Brachypodium distachyon]

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 9/124 (7%)

Query: 2   LPPGVVFNPTEEDRVS-YLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQM 60
           LPPG  F+PT+E+ V+ YL  + +G   G     I ++ L   +PWEL S+A     +  
Sbjct: 16  LPPGFRFHPTDEELVADYLCARAAGR--GAPVPIIAEVDLYRFDPWELPSMALFGTREWY 73

Query: 61  YFTHLRSRY-HSEMVYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYY----KKDVKT 115
           +FT    +Y +     R A  G+WK  G    +  K G+   +KK+L +Y     + VKT
Sbjct: 74  FFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAHK-GRTAGIKKALVFYHGKPPRGVKT 132

Query: 116 QWLM 119
            W+M
Sbjct: 133 DWIM 136

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466597|ref|XP_003603583.1| NAC domain protein [Medicago truncatula] gi|355492631|gb|AES73834.1| NAC domain protein [Medicago truncatula]

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 11/126 (8%)

Query: 2   LPPGVVFNPTEEDRVS-YLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQM 60
           LPPG  F+PT+E+ ++ YLI K+S  +  G +  I DI L + EPWEL   A     ++ 
Sbjct: 22  LPPGFRFHPTDEELITCYLINKISDSSFTGKA--ITDIDLNKSEPWELPGKAK-MGEKEW 78

Query: 61  YFTHLRSRYHSEMVY--REAVCGFWKNLGLSSYINDK-GGKPVAVKKSLNYYK----KDV 113
           YF ++R R +   V   R    G+WK  G    I D    + V +KK+L +YK    +  
Sbjct: 79  YFFNMRDRKYPTGVRTNRATNTGYWKTTGKDREIFDSVTSELVGMKKTLVFYKGRAPRGE 138

Query: 114 KTQWLM 119
           K+ W+M
Sbjct: 139 KSNWVM 144

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
TAIR|locus:2011736	334	CUC3 "CUP SHAPED COTYLEDON3" [	0.858	0.344	0.349	1.3e-11
TAIR|locus:2061082	316	NAC038 "NAC domain containing	0.858	0.363	0.349	1.1e-10
TAIR|locus:2153899	451	TIP "TCV-interacting protein"	0.865	0.257	0.317	1.6e-10
TAIR|locus:2007166	268	NAP "NAC-like, activated by AP	0.858	0.429	0.322	5.2e-10
TAIR|locus:2090176	317	NAC3 "NAC domain containing pr	0.850	0.359	0.36	5.3e-10
TAIR|locus:2008490	323	NAC025 "NAC domain containing	0.873	0.362	0.333	7.2e-10
TAIR|locus:2011516	320	NAM "NO APICAL MERISTEM" [Arab	0.865	0.362	0.338	9.1e-10
TAIR|locus:2114678	469	NAC062 "NAC domain containing	0.850	0.243	0.312	1.2e-09
TAIR|locus:2202820	418	FEZ "FEZ" [Arabidopsis thalian	0.873	0.279	0.333	1.3e-09
TAIR|locus:2051053	268	NAC041 "NAC domain containing	0.828	0.414	0.336	1.5e-09

TAIR|locus:2011736 CUC3 "CUP SHAPED COTYLEDON3" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 44/126 (34%), Positives = 69/126 (54%)

Query:     2 LPPGVVFNPTEEDRVS-YLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQM 60
             LPPG  F+PT+E+ ++ YL  K+  H    G + I ++ L   EPWEL  +A     ++ 
Sbjct:    22 LPPGFRFHPTDEELITFYLASKIF-HGGLSGIH-ISEVDLNRCEPWELPEMAK-MGEREW 78

Query:    61 YFTHLRSR-YHSEM-VYREAVCGFWKNLGLSSYI-NDKGGKPVAVKKSLNYYK----KDV 113
             YF  LR R Y + +   R    G+WK  G    + +  GG+ V +KK+L +YK    + +
Sbjct:    79 YFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVFSGGGGQLVGMKKTLVFYKGRAPRGL 138

Query:   114 KTQWLM 119
             KT+W+M
Sbjct:   139 KTKWVM 144

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010014 "meristem initiation" evidence=IGI;RCA;TAS

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IGI

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

TAIR|locus:2061082 NAC038 "NAC domain containing protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 44/126 (34%), Positives = 65/126 (51%)

Query:     2 LPPGVVFNPTEEDRVSY-LIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQM 60
             LPPG  F+PT+E+ +SY L+ K++     G +  I D+ L + EPWEL   A     ++ 
Sbjct:    16 LPPGFRFHPTDEELISYYLVNKIADQNFTGKA--IADVDLNKSEPWELPEKAK-MGGKEW 72

Query:    61 YFTHLRSRYHSEMVY--REAVCGFWKNLGLSSYI-NDKGGKPVAVKKSLNYYK----KDV 113
             YF  LR R +   V   R    G+WK  G    I N    + V +KK+L +Y+    +  
Sbjct:    73 YFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSTTSELVGMKKTLVFYRGRAPRGE 132

Query:   114 KTQWLM 119
             KT W+M
Sbjct:   133 KTCWVM 138

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2153899 TIP "TCV-interacting protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 40/126 (31%), Positives = 65/126 (51%)

Query:     2 LPPGVVFNPTEEDRVSYLIG-KVSGHTDGGGSYFIQDIQLCEHEPWEL--LSLAHDCCHQ 58
             LP G  F+PT+E+ V Y +  K++GH +      I++I +C+ EPW+L   S+      +
Sbjct:    13 LPVGFRFSPTDEELVRYYLRLKINGHDND--VRVIREIDICKWEPWDLPDFSVVKTTDSE 70

Query:    59 QMYFTHLRSRYHS-EMVYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYYK----KDV 113
              ++F  L  +Y S   + R  V G+WK  G    I     K + VK++L +Y     K  
Sbjct:    71 WLFFCPLDRKYPSGSRMNRATVAGYWKATGKDRKIKSGKTKIIGVKRTLVFYTGRAPKGT 130

Query:   114 KTQWLM 119
             +T W+M
Sbjct:   131 RTCWIM 136

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0051607 "defense response to virus" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2007166 NAP "NAC-like, activated by AP3/PI" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 40/124 (32%), Positives = 61/124 (49%)

Query:     2 LPPGVVFNPTEEDRVSYLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQMY 61
             LPPG  F+PT+E+ + Y +   +       S  I ++ + + +PW+L     +    + Y
Sbjct:     9 LPPGFRFHPTDEELIVYYLRNQTMSKPCPVS-IIPEVDIYKFDPWQLPEKT-EFGENEWY 66

Query:    62 FTHLRSRYHSEMVY--REAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYYK----KDVKT 115
             F   R R +   V   R AV G+WK  G    I+  G   V VKK+L +YK    K +KT
Sbjct:    67 FFSPRERKYPNGVRPNRAAVSGYWKATGTDKAIHS-GSSNVGVKKALVFYKGRPPKGIKT 125

Query:   116 QWLM 119
              W+M
Sbjct:   126 DWIM 129

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010150 "leaf senescence" evidence=IMP

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=IMP

GO:0009908 "flower development" evidence=IMP

TAIR|locus:2090176 NAC3 "NAC domain containing protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 5.3e-10, P = 5.3e-10
 Identities = 45/125 (36%), Positives = 62/125 (49%)

Query:     2 LPPGVVFNPTEED-RVSYLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQM 60
             LPPG  F PT+E+  V YL  K +GH        I +I L + +PW L S A     ++ 
Sbjct:    14 LPPGFRFYPTDEELMVEYLCRKAAGHDFS--LQLIAEIDLYKFDPWVLPSKAL-FGEKEW 70

Query:    61 YFTHLRSR-Y-HSEMVYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYY----KKDVK 114
             YF   R R Y +     R A  G+WK  G    I+ +G + V +KK+L +Y     K  K
Sbjct:    71 YFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVISTEGRR-VGIKKALVFYIGKAPKGTK 129

Query:   115 TQWLM 119
             T W+M
Sbjct:   130 TNWIM 134

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2008490 NAC025 "NAC domain containing protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 7.2e-10, P = 7.2e-10
 Identities = 41/123 (33%), Positives = 61/123 (49%)

Query:     2 LPPGVVFNPTEEDRVSYLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQMY 61
             LPPG  F+PT+E+ V + + K +       S  I +I L + +PWEL S A    H+  +
Sbjct:    16 LPPGFRFHPTDEELVVHYLKKKADSVPLPVS-IIAEIDLYKFDPWELPSKASFGEHEWYF 74

Query:    62 FTHLRSRYHSEM-VYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYY----KKDVKTQ 116
             F+    +Y + +   R A  G+WK  G    I       V VKK+L +Y     K +KT 
Sbjct:    75 FSPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTCNSHKVGVKKALVFYGGKPPKGIKTD 134

Query:   117 WLM 119
             W+M
Sbjct:   135 WIM 137

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2011516 NAM "NO APICAL MERISTEM" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 9.1e-10, P = 9.1e-10
 Identities = 43/127 (33%), Positives = 63/127 (49%)

Query:     2 LPPGVVFNPTEEDRVSYLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQMY 61
             LPPG  F+PT+E+ V + + + +       +  I D+ L + +PWEL + A     Q+ Y
Sbjct:    17 LPPGFRFHPTDEELVIHYLKRKADSVPLPVA-IIADVDLYKFDPWELPAKA-SFGEQEWY 74

Query:    62 FTHLRSR-Y-HSEMVYREAVCGFWKNLGLSSYINDKGG---KPVAVKKSLNYYK----KD 112
             F   R R Y +     R A  G+WK  G    +   GG   K V VKK+L +Y     K 
Sbjct:    75 FFSPRDRKYPNGARPNRAATSGYWKATGTDKPVISTGGGGSKKVGVKKALVFYSGKPPKG 134

Query:   113 VKTQWLM 119
             VK+ W+M
Sbjct:   135 VKSDWIM 141

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

TAIR|locus:2114678 NAC062 "NAC domain containing protein 62" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 40/128 (31%), Positives = 67/128 (52%)

Query:     2 LPPGVVFNPTEEDRVSYLIG-KVSGHTDGGGSYFIQDIQLCEHEPWEL--LSLAHDCCHQ 58
             LP G+ F PT+E+ + Y +  K++GH D   +  I++I +C+ EPW+L   S+      +
Sbjct:    13 LPVGLRFRPTDEELIRYYLRRKINGHDDDVKA--IREIDICKWEPWDLPDFSVIKTKDSE 70

Query:    59 QMYFTHLRSRYHS-EMVYREAVCGFWKNLGLSSYINDKGGKP--VAVKKSLNYYK----K 111
              +YF  L  +Y S     R  V G+WK  G    I  K GK   + VK++L ++     +
Sbjct:    71 WLYFCPLDRKYPSGSRQNRATVAGYWKATGKDRKI--KSGKTNIIGVKRTLVFHAGRAPR 128

Query:   112 DVKTQWLM 119
               +T W++
Sbjct:   129 GTRTNWII 136

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0070417 "cellular response to cold" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2202820 FEZ "FEZ" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 42/126 (33%), Positives = 65/126 (51%)

Query:     1 MLPPGVVFNPTEEDRVSYLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQM 60
             +L PG  F+PT+E+ VS+ + +   H        I+ + + +++PW+L   A     ++ 
Sbjct:    15 VLLPGFRFHPTDEELVSFYLKRKVQHNPLSIE-LIRQLDIYKYDPWDLPKFAMTG-EKEW 72

Query:    61 YFTHLRSR-Y-HSEMVYREAVCGFWKNLGLSSYI-NDKGGKPVAVKKSLNYYK----KDV 113
             YF   R R Y +S    R    GFWK  G    I + +G K + +KKSL +YK    K V
Sbjct:    73 YFYCPRDRKYRNSSRPNRVTGAGFWKATGTDRPIYSSEGNKCIGLKKSLVFYKGRAAKGV 132

Query:   114 KTQWLM 119
             KT W+M
Sbjct:   133 KTDWMM 138

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0045770 "positive regulation of asymmetric cell division" evidence=IMP

GO:0048103 "somatic stem cell division" evidence=IMP

GO:0048829 "root cap development" evidence=IMP

TAIR|locus:2051053 NAC041 "NAC domain containing protein 41" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 42/125 (33%), Positives = 62/125 (49%)

Query:     2 LPPGVVFNPTEEDRV-SYLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQM 60
             LPPG  F+PT+E+ V  YL  KV+G         I +  +C+ +PW+L     DC   +M
Sbjct:    15 LPPGFRFHPTDEELVVQYLRRKVTGLPLPAS--VIPETDVCKSDPWDLPG---DC-ESEM 68

Query:    61 YFTHLR-SRY-HSEMVYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYYK----KDVK 114
             YF   R ++Y +     R    G+WK  GL   I  K    V +KK+L +YK       +
Sbjct:    69 YFFSTREAKYPNGNRSNRSTGSGYWKATGLDKQIGKKK-LVVGMKKTLVFYKGKPPNGTR 127

Query:   115 TQWLM 119
             T W++
Sbjct:   128 TNWVL 132

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	134
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	4e-22

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score = 84.6 bits (210), Expect = 4e-22
 Identities = 43/130 (33%), Positives = 60/130 (46%), Gaps = 18/130 (13%)

Query: 2   LPPGVVFNPTEEDRVS-YLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQM 60
           LPPG  F+PT+E+ V  YL  KV G         I ++ + + EPW+L         ++ 
Sbjct: 1   LPPGFRFHPTDEELVVYYLKRKVLGKPLPLLD-VIPEVDIYKFEPWDLPDGKAKGGDREW 59

Query: 61  YFTHLRSRYHSEMVY-------REAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYYK--- 110
           YF   R R      Y       R    G+WK  G    +  KGG+ V +KK+L +YK   
Sbjct: 60  YFFSPRDR-----KYPNGSRTNRATGSGYWKATGKDKPVLSKGGEVVGMKKTLVFYKGRA 114

Query: 111 -KDVKTQWLM 119
            K  KT W+M
Sbjct: 115 PKGEKTDWVM 124

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	134
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=3.9e-46  Score=264.38  Aligned_cols=121  Identities=33%  Similarity=0.596  Sum_probs=90.2

Q ss_pred             CCCCceEcCChHHHHH-HHHHhHcCCCCCCCC-CceEeccCCCCCCcccchhcccCCCccEEEEeeccc-cCCCC-ceee
Q 038974            2 LPPGVVFNPTEEDRVS-YLIGKVSGHTDGGGS-YFIQDIQLCEHEPWELLSLAHDCCHQQMYFTHLRSR-YHSEM-VYRE   77 (134)
Q Consensus         2 LP~G~rF~PtDeELi~-YL~~k~~g~~~~~~~-~~I~~~Dvy~~~Pw~L~~~~~~~~~~~~yFF~~~~~-~~~g~-~~R~   77 (134)
                      |||||||+|||+|||. ||.+|+.+.  +++. .+|.++|||+.|||+|+..... .+++||||+++++ +.+|. .+|+
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~--~~~~~~~i~~~Diy~~~P~~L~~~~~~-~~~~~yFF~~~~~~~~~~~r~~R~   77 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGE--PLPCEDVIHDVDIYSAHPWELPAKFKG-GDEEWYFFSPRKKKYPNGGRPNRV   77 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT---HHCS-CHSEE--GGGS-GGGCHHHSSS--SSEEEEEEE----------S-EE
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCC--CCCcccceeecccCccChHHhhhhccC-CCceEEEEEecccccCCccccccc
Confidence            8999999999999999 999999999  6665 7899999999999999953222 3379999999998 77776 8899


Q ss_pred             eccceeeecCCCceEeCCCCceEEEEEEEEEEe----cCCCCCeEEEEEEeC
Q 038974           78 AVCGFWKNLGLSSYINDKGGKPVAVKKSLNYYK----KDVKTQWLMTCTHFC  125 (134)
Q Consensus        78 ~~~G~Wk~~g~~~~i~~~~g~~iG~kk~~~fy~----~~~kt~W~M~Ey~l~  125 (134)
                      +++|+||++|+.++|.+.+|++||+|++|+||.    ++.+|+|+||||+|.
T Consensus        78 ~~~G~Wk~~g~~~~i~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   78 TGGGYWKSTGKEKPIKDPGGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             ETTEEEEEECEEEEEEE-TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             ccceEEeecccccccccccceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            999999999999999988889999999999996    567999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	134
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		3e-08
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		4e-08
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		5e-08

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 9/124 (7%)
Query: 2   LPPGVVFNPTEEDRVS-YLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQM 60
           LPPG  F+PT+++ V  YL  K +G         I ++ L + +PW+L   A     +  
Sbjct: 15  LPPGFRFHPTDDELVEHYLCRKAAGQR--LPVPIIAEVDLYKFDPWDLPERALFGAREWY 72
Query: 61  YFTHLRSRY-HSEMVYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYY----KKDVKT 115
           +FT    +Y +     R A  G+WK  G    +  + G+ + +KK+L +Y     + VKT
Sbjct: 73  FFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPR-GRTLGIKKALVFYAGKAPRGVKT 131
Query: 116 QWLM 119
            W+M
Sbjct: 132 DWIM 135

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 11/125 (8%)
Query: 2   LPPGVVFNPTEED-RVSYLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQM 60
           LPPG  F PT+E+  V YL  K +G+        I +I L + +PW L + A     ++ 
Sbjct: 20  LPPGFRFYPTDEELMVQYLCRKAAGYD--FSLQLIAEIDLYKFDPWVLPNKAL-FGEKEW 76
Query: 61  YFTHLRSRYH--SEMVYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYY----KKDVK 114
           YF   R R +       R A  G+WK  G    I+ +G + V +KK+L +Y     K  K
Sbjct: 77  YFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQR-VGIKKALVFYIGKAPKGTK 135
Query: 115 TQWLM 119
           T W+M
Sbjct: 136 TNWIM 140

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 11/125 (8%)
Query: 2   LPPGVVFNPTEED-RVSYLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQM 60
           LPPG  F PT+E+  V YL  K +G+        I +I L + +PW L + A     ++ 
Sbjct: 17  LPPGFRFYPTDEELMVQYLCRKAAGYD--FSLQLIAEIDLYKFDPWVLPNKAL-FGEKEW 73
Query: 61  YFTHLRSRYH--SEMVYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYY----KKDVK 114
           YF   R R +       R A  G+WK  G    I+ +G + V +KK+L +Y     K  K
Sbjct: 74  YFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQR-VGIKKALVFYIGKAPKGTK 132
Query: 115 TQWLM 119
           T W+M
Sbjct: 133 TNWIM 137

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	134
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	1e-17
1ut7_A	171	No apical meristem protein; transcription regulati	3e-17

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score = 73.5 bits (181), Expect = 1e-17
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 9/124 (7%)

Query: 2   LPPGVVFNPTEEDRVS-YLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQM 60
           LPPG  F+PT+++ V  YL  K +G         I ++ L + +PW+L   A     +  
Sbjct: 15  LPPGFRFHPTDDELVEHYLCRKAAGQRLPVP--IIAEVDLYKFDPWDLPERALFGAREWY 72

Query: 61  YFTHLRSRY-HSEMVYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYYK----KDVKT 115
           +FT    +Y +     R A  G+WK  G    +    G+ + +KK+L +Y     + VKT
Sbjct: 73  FFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVA-PRGRTLGIKKALVFYAGKAPRGVKT 131

Query: 116 QWLM 119
            W+M
Sbjct: 132 DWIM 135

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score = 72.7 bits (179), Expect = 3e-17
 Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 15/128 (11%)

Query: 1   MLPPGVVFNPTEEDRVS-YLIGKVSGHTDGGGSYFIQDIQLCEHEPWEL--LSLAHDCCH 57
            LPPG  F PT+E+ +  YL  K +G+        I +I L + +PW L   +L  +   
Sbjct: 16  SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ--LIAEIDLYKFDPWVLPNKALFGE--- 70

Query: 58  QQMYFTHLRSR-Y-HSEMVYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYYK----K 111
           ++ YF   R R Y +     R A  G+WK  G    I+   G+ V +KK+L +Y     K
Sbjct: 71  KEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIS-TEGQRVGIKKALVFYIGKAPK 129

Query: 112 DVKTQWLM 119
             KT W+M
Sbjct: 130 GTKTNWIM 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	134
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=6.3e-51  Score=301.50  Aligned_cols=125  Identities=31%  Similarity=0.593  Sum_probs=112.3

Q ss_pred             CCCCCceEcCChHHHHH-HHHHhHcCCCCCCCCCceEeccCCCCCCcccchhcccCCCccEEEEeeccc-cCCCC-ceee
Q 038974            1 MLPPGVVFNPTEEDRVS-YLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQMYFTHLRSR-YHSEM-VYRE   77 (134)
Q Consensus         1 ~LP~G~rF~PtDeELi~-YL~~k~~g~~~~~~~~~I~~~Dvy~~~Pw~L~~~~~~~~~~~~yFF~~~~~-~~~g~-~~R~   77 (134)
                      .|||||||+|||||||. ||++|+.+.  +++..+|.++|||++|||+||+.+..++ .+||||+++.+ +++|. .+|+
T Consensus        14 ~LPpGfRF~PTDeELV~~YL~~K~~g~--~~~~~~I~evDvy~~~Pw~Lp~~~~~g~-~ewYFFs~r~~ky~~g~R~nR~   90 (174)
T 3ulx_A           14 NLPPGFRFHPTDDELVEHYLCRKAAGQ--RLPVPIIAEVDLYKFDPWDLPERALFGA-REWYFFTPRDRKYPNGSRPNRA   90 (174)
T ss_dssp             TCCTTCCCCCCHHHHHHHTHHHHHHTC--CCSSSCCEECCGGGSCGGGSGGGCSSCS-SEEEEEEECCC-----CCSCEE
T ss_pred             CCCCcceeCCCHHHHHHHHHHHHhcCC--CCCcCeeeecccccCCchhhhhhhccCC-ceEEEEeccccccCCCCCceee
Confidence            48999999999999999 999999999  8888999999999999999999887665 89999999998 89888 8999


Q ss_pred             eccceeeecCCCceEeCCCCceEEEEEEEEEEe----cCCCCCeEEEEEEeCCCCC
Q 038974           78 AVCGFWKNLGLSSYINDKGGKPVAVKKSLNYYK----KDVKTQWLMTCTHFCTITS  129 (134)
Q Consensus        78 ~~~G~Wk~~g~~~~i~~~~g~~iG~kk~~~fy~----~~~kt~W~M~Ey~l~~~~~  129 (134)
                      +++|+||++|++++|.+ +|++||+||+|+||.    ++.||+|+||||+|.++..
T Consensus        91 t~~G~WkatG~dk~I~~-~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~  145 (174)
T 3ulx_A           91 AGNGYWKATGADKPVAP-RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGR  145 (174)
T ss_dssp             ETTEEEEECSCCEEECC-SSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-
T ss_pred             cCCceEccCCCCcEEee-CCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCC
Confidence            99999999999999987 589999999999998    5789999999999998754

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=2.3e-50  Score=298.00  Aligned_cols=124  Identities=34%  Similarity=0.569  Sum_probs=111.2

Q ss_pred             CCCCCceEcCChHHHHH-HHHHhHcCCCCCCCCCceEeccCCCCCCcccchhcccCCCccEEEEeeccc-cCCCC-ceee
Q 038974            1 MLPPGVVFNPTEEDRVS-YLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQMYFTHLRSR-YHSEM-VYRE   77 (134)
Q Consensus         1 ~LP~G~rF~PtDeELi~-YL~~k~~g~~~~~~~~~I~~~Dvy~~~Pw~L~~~~~~~~~~~~yFF~~~~~-~~~g~-~~R~   77 (134)
                      .|||||||+|||||||. ||++|+.+.  +++..+|+++|||.+|||+||+.+..++ ++||||+++.+ +++|. .+|+
T Consensus        16 ~lPpGfRF~PTDeELv~~YL~~K~~g~--~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~-~ewyFFs~r~~k~~~g~R~~R~   92 (171)
T 1ut7_A           16 SLPPGFRFYPTDEELMVQYLCRKAAGY--DFSLQLIAEIDLYKFDPWVLPNKALFGE-KEWYFFSPRDRKYPNGSRPNRV   92 (171)
T ss_dssp             CCCTTEEECCCHHHHHHHTHHHHHTTC--CCSSCCSEECCGGGSCGGGHHHHSSSCS-SEEEEEEECCC-------CCEE
T ss_pred             CCCCcceeCCChHHHHHHHHHHHhcCC--CCCCCeEeecccccCChhHhhchhhcCC-ccEEEEeccccccCCCCccccc
Confidence            48999999999999999 999999999  8888899999999999999999876655 89999999998 89888 8999


Q ss_pred             eccceeeecCCCceEeCCCCceEEEEEEEEEEe----cCCCCCeEEEEEEeCCCC
Q 038974           78 AVCGFWKNLGLSSYINDKGGKPVAVKKSLNYYK----KDVKTQWLMTCTHFCTIT  128 (134)
Q Consensus        78 ~~~G~Wk~~g~~~~i~~~~g~~iG~kk~~~fy~----~~~kt~W~M~Ey~l~~~~  128 (134)
                      +++|+||++|++++|.+ +|++||+||+|+||.    ++.||+|+||||+|.+++
T Consensus        93 t~~G~Wk~tG~~k~I~~-~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~  146 (171)
T 1ut7_A           93 AGSGYWKATGTDKIIST-EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPS  146 (171)
T ss_dssp             ETTEEEEEEEEEEEEEE-TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC
T ss_pred             CCCCEEeccCCCceEEe-cCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCc
Confidence            99999999999999997 579999999999999    578999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	134
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	4e-18

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 73.5 bits (180), Expect = 4e-18
 Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 9/124 (7%)

Query: 2   LPPGVVFNPTEEDRVS-YLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQM 60
           LPPG  F PT+E+ +  YL  K +G+        I +I L + +PW L + A     +  
Sbjct: 17  LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ--LIAEIDLYKFDPWVLPNKALFGEKEWY 74

Query: 61  YFTHLRSRY-HSEMVYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYYK----KDVKT 115
           +F+    +Y +     R A  G+WK  G    I+   G+ V +KK+L +Y     K  KT
Sbjct: 75  FFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIST-EGQRVGIKKALVFYIGKAPKGTKT 133

Query: 116 QWLM 119
            W+M
Sbjct: 134 NWIM 137

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	134
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.7e-49  Score=288.54  Aligned_cols=125  Identities=34%  Similarity=0.564  Sum_probs=110.3

Q ss_pred             CCCCCceEcCChHHHHH-HHHHhHcCCCCCCCCCceEeccCCCCCCcccchhcccCCCccEEEEeeccc-cCCCC-ceee
Q 038974            1 MLPPGVVFNPTEEDRVS-YLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQMYFTHLRSR-YHSEM-VYRE   77 (134)
Q Consensus         1 ~LP~G~rF~PtDeELi~-YL~~k~~g~~~~~~~~~I~~~Dvy~~~Pw~L~~~~~~~~~~~~yFF~~~~~-~~~g~-~~R~   77 (134)
                      +|||||||+|||||||. ||++|+.|.  |++..+|+++|||.+|||+||+.+..++ ++||||+++++ +++|. .+|+
T Consensus        16 ~LPpG~RF~PTDeELv~~YL~~Ki~g~--~l~~~~I~~~Dvy~~~Pw~Lp~~~~~~~-~~wyFft~~~~k~~~g~r~~R~   92 (166)
T d1ut7a_          16 SLPPGFRFYPTDEELMVQYLCRKAAGY--DFSLQLIAEIDLYKFDPWVLPNKALFGE-KEWYFFSPRDRKYPNGSRPNRV   92 (166)
T ss_dssp             CCCTTEEECCCHHHHHHHTHHHHHTTC--CCSSCCSEECCGGGSCGGGHHHHSSSCS-SEEEEEEECCC-------CCEE
T ss_pred             cCCCccccCCCcHHHHHHHHHHHHcCC--CCCcccceeccCCcCChhhccchhccCc-ceEEEEeeeccccCCCCccccc
Confidence            59999999999999999 999999999  8898999999999999999999876554 88999999998 78877 8899


Q ss_pred             eccceeeecCCCceEeCCCCceEEEEEEEEEEe----cCCCCCeEEEEEEeCCCCC
Q 038974           78 AVCGFWKNLGLSSYINDKGGKPVAVKKSLNYYK----KDVKTQWLMTCTHFCTITS  129 (134)
Q Consensus        78 ~~~G~Wk~~g~~~~i~~~~g~~iG~kk~~~fy~----~~~kt~W~M~Ey~l~~~~~  129 (134)
                      +++|+||++|+++.|.+ +|++||+|++|+||.    ++.+|+|+||||+|.++..
T Consensus        93 ~g~G~Wk~~g~~~~i~~-~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~  147 (166)
T d1ut7a_          93 AGSGYWKATGTDKIIST-EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSR  147 (166)
T ss_dssp             ETTEEEEEEEEEEEEEE-TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC-
T ss_pred             cCCCEecccCCCceEec-CCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCccc
Confidence            99999999999999886 789999999999998    5678999999999988754