Citrus Sinensis ID: 038975

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
Protein Sequence
MCNNLLLSGGVPVSYAMVEGDVTMVNPIMHPSSSVQSSTTDAFLANGQSKSELFHSVENDLFVGLGLNSGCAQADIGECWEDYIKPAVSGDHSAISTHMSECITELDVGSASGPCKGLFSELRLEELLRSSTNPSTIAKCSLEDQFFSPKRRKLESSSSNGNEVQRIKLPCSAGSISLVQDVHNKQNTNNLVWKKDVLPKSQVGLWIDDSYSINAENAVAVSPQKPEKHMKLSKKRARPGESTRPRPKDRQQIQDRLKELRDIIPNGAKCSIDCLLDLTIKHMIFLKSITQCADKIKEAEEPKLIDKENEVVLKDNSTGGHSGGGCATWACEVEGPTLSCPIIVQDLSTPRQMLIEMVCEDRGFFLEITDMIRGFGLNIWKGVMERREDKIWARFIVE
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEccccccccEEEEcccccHHHHHHHHHHcccHHHHHHHHHHccccEEEEHHHHHccccEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccEEEEcccccccccccccccccHcccccccccccccccccHHHcccccccccccccccccHcccccccccccccccccccHHHHHccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHEcccccccEcccccccccccccccEEEEEEcccccEccEEEEcccccccEEEEEEcHHHcHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEc
Coil and Loop (DISEMBL)
mcnnlllsggvpvsyamvegdvtmvnpimhpsssvqssttdaflangqskselFHSVENDLFvglglnsgcaqadigecwedyikpavsgdhsaISTHMSECiteldvgsasgpckglfsELRLEELLrsstnpstiakcsledqffspkrrklessssngnevqriklpcsagsisLVQDVhnkqntnnlvwkkdvlpksqvglwiddsysinaenavavspqkpekhmklskkrarpgestrprpkdRQQIQDRLKELRDiipngakcSIDCLLDLTIKHMIFLKSITQCADKIkeaeepklidkenevvlkdnstgghsgggcatwacevegptlscpiivqdlstPRQMLIEMVCEDRGFFLEITDMIRGFGLNIWKGVMERREDKIWARFIVE
Flexible Loop (DISEMBL)
mcnnlllsggVPVSYAMVEGDVTMVNPIMHPSSSVQSSTTDAFLANGQSKSELFHSVENDLFVGLGLNSGCAQADIGECWEDYIKPAVSGDHSAISTHMSECITELDVGSASGPCKGLFSELRLEELLRsstnpstiakcsledqffspkrrklessssngnevqrIKLPCSAGSISLVQDVHNKQntnnlvwkkdvlpKSQVGLWIDDSYSINAenavavspqkpekhmklskkrarpgestrprpkdrqqIQDRLKElrdiipngaKCSIDCLLDLTIKHMIFLKSITQCADKIKEaeepklidkeneVVLKDNSTGGHSGGGCATWACEVEGPTLSCPIIVQDLSTPRQMLIEMVCEDRGFFLEITDMIRGFGLNIWKGVMERREDKIWARFIVE
Low Complexity Region (SEG)
MCNNLLLSGGVPVSYAMVEGDVTMVNPIMHPSSSVQSSTTDAFLANGQSKSELFHSVENDLFVGLGLNSGCAQADIGECWEDYIKPAVSGDHSAISTHMSECITELDVGSASGPCKGLFselrleellrssTNPSTIAKCSLEDQFFSPKRRKLESSSSNGNEVQRIKLPCSAGSISLVQDVHNKQNTNNLVWKKDVLPKSQVGLWIDDSYSINAENAVAVSPQKPEKHMKLSKKRARPGESTRPRPKDRQQIQDRLKELRDIIPNGAKCSIDCLLDLTIKHMIFLKSITQCADKIKEAEEPKLIDKENEVVLKDNSTGGHSGGGCATWACEVEGPTLSCPIIVQDLSTPRQMLIEMVCEDRGFFLEITDMIRGFGLNIWKGVMERREDKIWARFIVE
Disordered region (IsUnstruct)
****LLLSGGVPVSYAMVEGDVTMVN**************************LFHSVENDLFVGLGLNSGCAQADIGECWEDYIKPAVSGDHSAISTHMSECITELDVGSASGPCKGLFSELRL*********************************************PCSAGSISLVQDVHNKQNTNNLVWKKDVLPKSQVGLWIDDSYSINAE*******************************************LRDIIPNGAKCSIDCLLDLTIKHMIFLKSITQCADKIK**************VL*******HSGGGCATWACEVEGPTLSCPIIVQDLSTPRQMLIEMVCEDRGFFLEITDMIRGFGLNIWKGVMERREDKIWARFIV*
Disordered Region (DISOPRED)
*********GVPVSYAMVEGDVTMV*********************************NDLFVGLGLNSGCAQADIGECWEDYI**************************************RLEE*********************************************************************************************************************************RLKELRDIIPNGAKCSIDCLLDLTIKHMIFLKSITQCA***********************************WACEVEGPTLSCPIIVQDLSTPRQMLIEMVCEDRGFFLEITDMIRGFGLNIWKGVMERREDKIWARFIVE
Disordered Region (DISEMBL)
MCNNLLLSGGVPVSYAMVEGDVTMVNPIMHP*********DAFLANGQSKSELFHSVENDLFVGLGLNSGCAQADIGECWEDYIKPAVSGDHSAISTHMSECITELDVGSASGPCKGLFSELRLEELLRSSTNPSTIAKCSLEDQFFS****************QRIKLPCSAGSISLVQDVHNKQNTNNLVWKKDVLPKSQVGLWIDDSYSINAENAVAV********************************QDRLKELRDIIPNGAKCSIDCLLDLTIKHMIFLKSITQCADKIKEAEEPKLIDKENEVVLKDNSTGGHSGGGCATWACEVEGPTLSCPIIVQDLSTPRQMLIEMVCEDRGFFLEITDMIRGFGLNIWKGVMERREDKIWARFIVE
Disordered Region (DISPRO)
**************Y*MVEGDVTMVNPIMHP************LANGQSKSELFHSVENDLFVGLGLNSGCAQADIGECWEDYIKPAVSGDHSAISTHMSECITELDVGSASGPCKGLFSELRLEELLRS*********************************************************************************************************************KDRQQIQDRLKELRDIIPNGAKCSIDCLLDLTIKHMIFLKSITQCADKIKEAEEPKLIDKENEVVLKD********GGCATWACEVEGPTLSCPIIVQDLSTPRQMLIEMVCEDRGFFLEITDMIRGFGLNIWKGVMERREDKIWARFIVE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCNNLLLSGGVPVSYAMVEGDVTMVNPIMHPSSSVQSSTTDAFLANGQSKSELFHSVENDLFVGLGLNSGCAQADIGECWEDYIKPAVSGDHSAISTHMSECITELDVGSASGPCKGLFSELRLEELLRSSTNPSTIAKCSLEDQFFSPKRRKLESSSSNGNEVQRIKLPCSAGSISLVQDVHNKQNTNNLVWKKDVLPKSQVGLWIDDSYSINAENAVAVSPQKPEKHMKLSKKRARPGESTRPRPKDRQQIQDRLKELRDIIPNGAKCSIDCLLDLTIKHMIFLKSITQCADKIKEAEEPKLIDKENEVVLKDNSTGGHSGGGCATWACEVEGPTLSCPIIVQDLSTPRQMLIEMVCEDRGFFLEITDMIRGFGLNIWKGVMERREDKIWARFIVE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	398	2.2.26 [Sep-21-2011]
Q9XIN0	650	Transcription factor LHW	yes	no	0.459	0.281	0.489	3e-51
Q7XJU0	527	Transcription factor bHLH	no	no	0.585	0.442	0.414	3e-47
P0C7P8	734	Transcription factor EMB1	no	no	0.407	0.220	0.470	2e-39
Q58G01	720	Transcription factor bHLH	no	no	0.389	0.215	0.470	9e-37
Q84WK0	352	Transcription factor bHLH	no	no	0.155	0.176	0.343	0.0008

>sp|Q9XIN0|LHW_ARATH Transcription factor LHW OS=Arabidopsis thaliana GN=LHW PE=1 SV=1

 Score =  202 bits (515), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 97/198 (48%), Positives = 135/198 (68%), Gaps = 15/198 (7%)

Query: 201 SQVGLWIDDSYSINAENAVAVSPQKPEKHMKLSKKRARPGESTRPRPKDRQQIQDRLKEL 260
           SQ+  W++ ++S+  E +  +  +        ++KR +PGE+ RPRPKDRQ IQDR+KEL
Sbjct: 419 SQISSWVEQAHSLKREGSPRMVNKNETAKPANNRKRLKPGENPRPRPKDRQMIQDRVKEL 478

Query: 261 RDIIPNGAKCSIDCLLDLTIKHMIFLKSITQCADKIKEAEEPKLIDKENEVVLKDNSTGG 320
           R+IIPNGAKCSID LL+ TIKHM+FL+++++ +DK+K+  E K++ ++            
Sbjct: 479 REIIPNGAKCSIDALLERTIKHMLFLQNVSKHSDKLKQTGESKIMKED------------ 526

Query: 321 HSGGGCATWACEVEGPTLSCPIIVQDLSTPRQMLIEMVCEDRGFFLEITDMIRGFGLNIW 380
              GG ATWA EV   ++ CPI+V+D++ PR   +EM+CE RGFFLEI D IR  GL I 
Sbjct: 527 ---GGGATWAFEVGSKSMVCPIVVEDINPPRIFQVEMLCEQRGFFLEIADWIRSLGLTIL 583

Query: 381 KGVMERREDKIWARFIVE 398
           KGV+E R DKIWARF VE
Sbjct: 584 KGVIETRVDKIWARFTVE 601

Transcription activator that regulates root development; promotes the production of stele cells in roots. Coordinately controls the number of all vascular cell types by regulating the size of the pool of cells from which they arise.
Arabidopsis thaliana (taxid: 3702)

>sp|Q7XJU0|LHWL2_ARATH Transcription factor bHLH157 OS=Arabidopsis thaliana GN=BHLH157 PE=2 SV=1

 Score =  189 bits (480), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 118/285 (41%), Positives = 165/285 (57%), Gaps = 52/285 (18%)

Query: 114 PCKGLFSELRLEELLRSSTNPSTIAKCSLEDQFFSPKRRKLESSSSNGNEVQRIKLPCSA 173
           P KGLFSEL +   L ++T  S++            KRRKL++SS++ + +         
Sbjct: 266 PPKGLFSEL-ISSSLSNNTCSSSLTNVQEYSGVNQSKRRKLDTSSAHSSSL--------- 315

Query: 174 GSISLVQDVHNKQNTNNLVWKKDVLPKSQVGLWIDDSYSINAENAVAVSPQKPEKHMKLS 233
                               ++ V  +S   LWIDD    +  +++  + +KP +   + 
Sbjct: 316 -----------------FPQEETVTSRS---LWIDD----DERSSIGGNWKKPHEE-GVK 350

Query: 234 KKRARPGESTRPRPKDRQQIQDRLKELRDIIPNGAKCSIDCLLDLTIKHMIFLKSITQCA 293
           KKRA+ GES RPRPKDRQ IQDR+KELR +IPNGAKCSID LLDLTIKHM+F++S+ + A
Sbjct: 351 KKRAKAGESRRPRPKDRQMIQDRIKELRGMIPNGAKCSIDTLLDLTIKHMVFMQSLAKYA 410

Query: 294 DKIKEAEEPKLIDKENEVVLKDNSTGGHSGGGCATWACEVEGPTLSCPIIVQDLSTPRQM 353
           +++K+  E KL+ KE E                 TWA EV    + CPI+V++L+   +M
Sbjct: 411 ERLKQPYESKLV-KEKE----------------RTWALEVGEEGVVCPIMVEELNREGEM 453

Query: 354 LIEMVCEDRGFFLEITDMIRGFGLNIWKGVMERREDKIWARFIVE 398
            IEMVCE+R  FLEI  ++RG GL I KGVME R+ +IWA FIV+
Sbjct: 454 QIEMVCEEREEFLEIGQVVRGLGLKILKGVMETRKGQIWAHFIVQ 498

Transcription factor that may regulate root development.

Arabidopsis thaliana (taxid: 3702)

>sp|P0C7P8|LHWL1_ARATH Transcription factor EMB1444 OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=1

 Score =  163 bits (413), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/168 (47%), Positives = 116/168 (69%), Gaps = 6/168 (3%)

Query: 231 KLSKKRARPGESTRPRPKDRQQIQDRLKELRDIIPNGAKCSIDCLLDLTIKHMIFLKSIT 290
           K +KKRA+PGES+RPRP+DRQ IQDR+KELR+++PNG+KCSID LL+ TIKHM+FL+S++
Sbjct: 546 KKNKKRAKPGESSRPRPRDRQLIQDRIKELRELVPNGSKCSIDSLLECTIKHMLFLQSVS 605

Query: 291 QCADKIKEAEEPKLIDKENEVVLKDNSTGGHSGGGCATWACEVEGPTLSCPIIVQDLSTP 350
           Q ADK+ ++   K+  K+   +   ++  G      ++WA E+ G    C I+V++L   
Sbjct: 606 QHADKLTKSASSKMQHKDTGTLGISSTEQG------SSWAVEIGGHLQVCSIMVENLDKE 659

Query: 351 RQMLIEMVCEDRGFFLEITDMIRGFGLNIWKGVMERREDKIWARFIVE 398
             MLIEM+CE+   FLEI ++IR   L I +G  E++ +K W  F+VE
Sbjct: 660 GVMLIEMLCEECSHFLEIANVIRSLELIILRGTTEKQGEKTWICFVVE 707

Transcription factor that may regulate root development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q58G01|LHWL3_ARATH Transcription factor bHLH155 OS=Arabidopsis thaliana GN=BHLH155 PE=2 SV=1

 Score =  154 bits (390), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 79/168 (47%), Positives = 111/168 (66%), Gaps = 13/168 (7%)

Query: 231 KLSKKRARPGESTRPRPKDRQQIQDRLKELRDIIPNGAKCSIDCLLDLTIKHMIFLKSIT 290
           K +KKRA+PGES+RPRP+DRQ IQDR+KELR+++PNG+KCSID LL+ TIKHM+FL+++T
Sbjct: 538 KKNKKRAKPGESSRPRPRDRQLIQDRIKELRELVPNGSKCSIDSLLERTIKHMLFLQNVT 597

Query: 291 QCADKIKEAEEPKLIDKENEVVLKDNSTGGHSGGGCATWACEVEGPTLSCPIIVQDLSTP 350
           + A+K+ ++   K+  KE           G  G  CA    EV G      IIV++L+  
Sbjct: 598 KHAEKLSKSANEKMQQKET----------GMQGSSCAV---EVGGHLQVSSIIVENLNKQ 644

Query: 351 RQMLIEMVCEDRGFFLEITDMIRGFGLNIWKGVMERREDKIWARFIVE 398
             +LIEM+CE+ G FLEI ++IR   L I +G  E + +K W  F+ E
Sbjct: 645 GMVLIEMLCEECGHFLEIANVIRSLDLVILRGFTETQGEKTWICFVTE 692

Transcription factor that may regulate root development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WK0|BH085_ARATH Transcription factor bHLH85 OS=Arabidopsis thaliana GN=BHLH85 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 5/67 (7%)

Query: 226 PEKHMKLS-KKRARPGESTRPRP----KDRQQIQDRLKELRDIIPNGAKCSIDCLLDLTI 280
           P K + L+ K RA  G +T P+     K R++I +RL+ L++++PNG K  I  +L+  +
Sbjct: 256 PSKALNLNGKTRASRGAATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAV 315

Query: 281 KHMIFLK 287
            ++ FL+
Sbjct: 316 HYVKFLQ 322

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	398
147820976	893	hypothetical protein VITISV_028112 [Viti	0.974	0.434	0.587	1e-118
359473962	858	PREDICTED: uncharacterized basic helix-l	0.942	0.437	0.571	1e-117
224072264	831	predicted protein [Populus trichocarpa]	0.967	0.463	0.548	1e-113
297742414	868	unnamed protein product [Vitis vinifera]	0.914	0.419	0.566	1e-111
224058050	446	predicted protein [Populus trichocarpa]	0.964	0.860	0.540	1e-110
255555701	725	bhlh transcription factor, putative [Ric	0.932	0.511	0.543	1e-106
449456927	772	PREDICTED: transcription factor bHLH157-	0.962	0.496	0.452	2e-84
356533699	797	PREDICTED: uncharacterized protein LOC10	0.844	0.421	0.495	1e-82
356574827	799	PREDICTED: uncharacterized protein LOC10	0.844	0.420	0.494	2e-81
357136986	774	PREDICTED: uncharacterized protein LOC10	0.675	0.347	0.518	4e-69

>gi|147820976|emb|CAN74602.1| hypothetical protein VITISV_028112 [Vitis vinifera]

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/393 (58%), Positives = 292/393 (74%), Gaps = 5/393 (1%)

Query: 9   GGVPVSYAMVEGDVTMVNPIMHPSSSVQSSTTDAFLANGQSKSELFHSVENDLFVGLGLN 68
           G   +S  +   D  +  P+ HP+SS+QSS  + F ++G+ +S    S ENDLF GLGL+
Sbjct: 441 GITSLSSGLDRSDFLVDFPVKHPASSMQSSVINMFSSDGKERSLNVPSTENDLFDGLGLD 500

Query: 69  SGCAQADIGECWEDYIKPAVSGDHSAISTHMSECITELDVGSASGPCKGLFSELRLEELL 128
            G   A  GE WED+I P  +   S +ST +SECI+ELDVGS + P KGLFSEL L++LL
Sbjct: 501 FGFELA--GESWEDFIMPLFNDGQSTLSTGVSECISELDVGSMAVPRKGLFSELGLDQLL 558

Query: 129 RSST-NPSTIAKCSLEDQFFSPKRRKLESSSSNGNEVQRIKLP-CSAGSISLVQDVHNKQ 186
                N S++ K + EDQF S KRR+L SSS N N+VQ   L  C +GS++++Q V+N  
Sbjct: 559 DDIVGNSSSVTKSNSEDQFSSTKRRRLGSSSVNSNQVQSAGLSSCFSGSMNVMQPVYNLD 618

Query: 187 NTNNLVWKKDVLPKSQVGLWIDDSYSINAENAVAVSPQKPEKHMKLSKKRARPGESTRPR 246
            TN+LV KK+V+PKSQVGLWIDDSYSINA  +VA  P++P +  K +KKRA+PGESTRPR
Sbjct: 619 KTNSLVPKKEVIPKSQVGLWIDDSYSINAGGSVAAQPKRPVEPAKATKKRAKPGESTRPR 678

Query: 247 PKDRQQIQDRLKELRDIIPNGAKCSIDCLLDLTIKHMIFLKSITQCADKIKEAEEPKLID 306
           PKDRQQI+DRL+ELR IIPNG+KCSID LLD +IKHM+FL+S+T+ ADK+K+ +EPKLI 
Sbjct: 679 PKDRQQIKDRLEELRGIIPNGSKCSIDVLLDRSIKHMLFLQSVTKYADKLKQVDEPKLIG 738

Query: 307 KENEVVLKD-NSTGGHSGGGCATWACEVEGPTLSCPIIVQDLSTPRQMLIEMVCEDRGFF 365
            EN VVLKD +S G  + GG ATWA EV G T+ CPI V+DL+ P QMLIEM+CE++GFF
Sbjct: 739 HENGVVLKDNSSGGSGNSGGGATWAFEVSGQTMVCPIRVEDLNPPGQMLIEMLCEEQGFF 798

Query: 366 LEITDMIRGFGLNIWKGVMERREDKIWARFIVE 398
           LEI D+IR FGLNI KGVME RE+KIWARFIVE
Sbjct: 799 LEIADIIRSFGLNILKGVMEVRENKIWARFIVE 831

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473962|ref|XP_002273163.2| PREDICTED: uncharacterized basic helix-loop-helix protein At1g64625-like [Vitis vinifera]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/392 (57%), Positives = 286/392 (72%), Gaps = 17/392 (4%)

Query: 9   GGVPVSYAMVEGDVTMVNPIMHPSSSVQSSTTDAFLANGQSKSELFHSVENDLFVGLGLN 68
           G   +S  +   D  +  P+ HP+SS+QSS  + F ++G+ +S    S ENDLF GLGL+
Sbjct: 420 GITSLSSGLDRSDFLVDFPVKHPASSMQSSVINMFSSDGKERSLNVPSTENDLFDGLGLD 479

Query: 69  SGCAQADIGECWEDYIKPAVSGDHSAISTHMSECITELDVGSASGPCKGLFSELRLEELL 128
            G   A  GE WED+I P  +   S +ST +SECI+ELDVGS + P KGLFSEL L++LL
Sbjct: 480 FGFELA--GESWEDFIMPLFNDGQSTLSTGVSECISELDVGSMAVPRKGLFSELGLDQLL 537

Query: 129 RSST-NPSTIAKCSLEDQFFSPKRRKLESSSSNGNEVQRIKLP-CSAGSISLVQDVHNKQ 186
                N S++ K + EDQF S KRR+L SSS N N+VQ   L  C +GS++++Q V+N  
Sbjct: 538 DDIVGNSSSVTKSNSEDQFSSTKRRRLGSSSVNSNQVQSAGLSSCFSGSMNVMQPVYNLD 597

Query: 187 NTNNLVWKKDVLPKSQVGLWIDDSYSINAENAVAVSPQKPEKHMKLSKKRARPGESTRPR 246
            TN+LV KK+V+PKSQVGLWIDDSYSINA  +VA  P++P +  K +KKRA+PGESTRPR
Sbjct: 598 KTNSLVPKKEVIPKSQVGLWIDDSYSINAGGSVAAQPKRPVEPAKATKKRAKPGESTRPR 657

Query: 247 PKDRQQIQDRLKELRDIIPNGAKCSIDCLLDLTIKHMIFLKSITQCADKIKEAEEPKLID 306
           PKDRQQI+DRL+ELR IIPNG+KCSID LLD +IKHM+FL+S+T+ ADK+K+ +EPK+I+
Sbjct: 658 PKDRQQIKDRLEELRGIIPNGSKCSIDVLLDRSIKHMLFLQSVTKYADKLKQVDEPKVIN 717

Query: 307 KENEVVLKDNSTGGHSGGGCATWACEVEGPTLSCPIIVQDLSTPRQMLIEMVCEDRGFFL 366
                        G+SGGG ATWA EV G T+ CPI V+DL+ P QMLIEM+CE++GFFL
Sbjct: 718 H------------GNSGGG-ATWAFEVSGQTMVCPIRVEDLNPPGQMLIEMLCEEQGFFL 764

Query: 367 EITDMIRGFGLNIWKGVMERREDKIWARFIVE 398
           EI D+IR FGLNI KGVME RE+KIWARFIVE
Sbjct: 765 EIADIIRSFGLNILKGVMEVRENKIWARFIVE 796

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072264|ref|XP_002303679.1| predicted protein [Populus trichocarpa] gi|222841111|gb|EEE78658.1| predicted protein [Populus trichocarpa]

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/399 (54%), Positives = 281/399 (70%), Gaps = 14/399 (3%)

Query: 1   MCNNLLLSGGV-PVSYAMVEGDVTMVNPIMHPSSSVQSSTTDAFLANGQSKSELFHSVEN 59
           M  NL   GGV P S  ++ GD+ +  P+  P++  QSS T+++L+NG+ K       EN
Sbjct: 375 MNGNLSQPGGVTPASPGLI-GDILVDIPLKQPATLAQSSVTESYLSNGKEKCASITGTEN 433

Query: 60  DLFVGLGLNSGCAQADIGECWEDYIKPAVSGDHSAISTHMSECITELDVGSASGPCKGLF 119
           DL  GLGL  G  QA    CWED + P  S  H+  ST +SECI+ELDV S  GP KGLF
Sbjct: 434 DLLEGLGLVFGGGQAR--HCWEDIMVPVASSGHTTASTGISECISELDVDSKVGPRKGLF 491

Query: 120 SELRLEELLRSSTNPSTIAKCSLEDQFFSPKRRKLESSSSNGNEVQRIKLPCSAGSISLV 179
           SEL     L S +N + + K S +DQ  + KRR++E+SS NGN++Q +   C   S  ++
Sbjct: 492 SEL-----LDSVSNSNYVTKSSSDDQLSNAKRRRVENSSVNGNQLQLVNASCPTSS-RVM 545

Query: 180 QDVHNKQNTNNLVWKKDVLPKSQVGLWIDDSYSINAENAVAVSPQKPEKHMKLSKKRARP 239
           Q  +N   T NL+ K+++ PK+Q  LWIDDSYS+N  ++     +KPE+  K +KKRARP
Sbjct: 546 QPAYNFDKTKNLLSKQEMFPKAQTVLWIDDSYSVNTGSSGLTKSKKPEEPAKANKKRARP 605

Query: 240 GESTRPRPKDRQQIQDRLKELRDIIPNGAKCSIDCLLDLTIKHMIFLKSITQCADKIKEA 299
           GESTRPRPKDRQQIQDR+KEL+ IIP+GAKCSID LLD TIKHM+FL+S+T+ A+K+K+A
Sbjct: 606 GESTRPRPKDRQQIQDRIKELKQIIPDGAKCSIDALLDRTIKHMLFLQSVTKYAEKLKQA 665

Query: 300 EEPKLIDKENEVVLKDNSTGGHSGGGCATWACEVEGPTLSCPIIVQDLSTPRQMLIEMVC 359
           +EPKLI + N ++ KDNST   SGG  ATWA EV   ++ CPIIV+DLS P  MLIEM+C
Sbjct: 666 DEPKLIGQHNRLLPKDNSTS--SGG--ATWALEVADQSMVCPIIVEDLSQPGLMLIEMLC 721

Query: 360 EDRGFFLEITDMIRGFGLNIWKGVMERREDKIWARFIVE 398
           EDRGFFLEI D+I+GFGLNI KG+ME REDKIWARFIVE
Sbjct: 722 EDRGFFLEIADVIKGFGLNILKGLMESREDKIWARFIVE 760

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742414|emb|CBI34563.3| unnamed protein product [Vitis vinifera]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/392 (56%), Positives = 277/392 (70%), Gaps = 28/392 (7%)

Query: 9   GGVPVSYAMVEGDVTMVNPIMHPSSSVQSSTTDAFLANGQSKSELFHSVENDLFVGLGLN 68
           G   +S  +   D  +  P+ HP+SS+QSS  + F ++G+ +S    S ENDLF GLGL+
Sbjct: 441 GITSLSSGLDRSDFLVDFPVKHPASSMQSSVINMFSSDGKERSLNVPSTENDLFDGLGLD 500

Query: 69  SGCAQADIGECWEDYIKPAVSGDHSAISTHMSECITELDVGSASGPCKGLFSELRLEELL 128
            G   A  GE WED+I P  +   S +ST +SECI+ELDVGS + P KGLFSEL L++LL
Sbjct: 501 FGFELA--GESWEDFIMPLFNDGQSTLSTGVSECISELDVGSMAVPRKGLFSELGLDQLL 558

Query: 129 RSST-NPSTIAKCSLEDQFFSPKRRKLESSSSNGNEVQRIKLPCSAGSISLVQDVHNKQN 187
                N S++ K + EDQF S KRR+L SSS N N+                        
Sbjct: 559 DDIVGNSSSVTKSNSEDQFSSTKRRRLGSSSVNSNQ------------------------ 594

Query: 188 TNNLVWKKDVLPKSQVGLWIDDSYSINAENAVAVSPQKPEKHMKLSKKRARPGESTRPRP 247
           TN+LV KK+V+PKSQVGLWIDDSYSINA  +VA  P++P +  K +KKRA+PGESTRPRP
Sbjct: 595 TNSLVPKKEVIPKSQVGLWIDDSYSINAGGSVAAQPKRPVEPAKATKKRAKPGESTRPRP 654

Query: 248 KDRQQIQDRLKELRDIIPNGAKCSIDCLLDLTIKHMIFLKSITQCADKIKEAEEPKLIDK 307
           KDRQQI+DRL+ELR IIPNG+KCSID LLD +IKHM+FL+S+T+ ADK+K+ +EPKLI  
Sbjct: 655 KDRQQIKDRLEELRGIIPNGSKCSIDVLLDRSIKHMLFLQSVTKYADKLKQVDEPKLIGH 714

Query: 308 ENEVVLKD-NSTGGHSGGGCATWACEVEGPTLSCPIIVQDLSTPRQMLIEMVCEDRGFFL 366
           EN VVLKD +S G  + GG ATWA EV G T+ CPI V+DL+ P QMLIEM+CE++GFFL
Sbjct: 715 ENGVVLKDNSSGGSGNSGGGATWAFEVSGQTMVCPIRVEDLNPPGQMLIEMLCEEQGFFL 774

Query: 367 EITDMIRGFGLNIWKGVMERREDKIWARFIVE 398
           EI D+IR FGLNI KGVME RE+KIWARFIVE
Sbjct: 775 EIADIIRSFGLNILKGVMEVRENKIWARFIVE 806

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058050|ref|XP_002299440.1| predicted protein [Populus trichocarpa] gi|222846698|gb|EEE84245.1| predicted protein [Populus trichocarpa]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/398 (54%), Positives = 276/398 (69%), Gaps = 14/398 (3%)

Query: 1   MCNNLLLSGGVPVSYAMVEGDVTMVNPIMHPSSSVQSSTTDAFLANGQSKSELFHSVEND 60
           M  NL  SGG   + + + GD+ +  P   P++S QSS T+ + ++G+ KS      END
Sbjct: 1   MNGNLSQSGGATSASSGLIGDLLVHIPSKQPATSAQSSVTETYFSSGKEKSVSVTGAEND 60

Query: 61  LFVGLGLNSGCAQADIGECWEDYIKPAVSGDHSAISTHMSECITELDVGSASGPCKGLFS 120
           LF GLGL     Q   G CWED + P         ST +SECI+ELDVGS  GP KGLFS
Sbjct: 61  LFEGLGLVFRGGQT--GHCWEDMMMPVARSGQITASTGVSECISELDVGSKVGPQKGLFS 118

Query: 121 ELRLEELLRSSTNPSTIAKCSLEDQFFSPKRRKLESSSSNGNEVQRIKLPCSAGSISLVQ 180
           EL LEELL S +N S + K S++DQ  + KRR++E+S  + +++Q +       S  ++Q
Sbjct: 119 ELGLEELLDSVSNSSYVTKYSIDDQLSNAKRRRVENSLVSSDKLQLVNASYPTSS-RMMQ 177

Query: 181 DVHNKQNTNNLVWKKDVLPKSQVGLWIDDSYSINAENAVAVSPQKPEKHMKLSKKRARPG 240
             +N   T NL  K++V PKSQV LWIDDSYS+N  ++      KPE+  K +KKRARPG
Sbjct: 178 PAYNLDKTKNLPSKQEVFPKSQVSLWIDDSYSVNTGSS---GLPKPEELAKPTKKRARPG 234

Query: 241 ESTRPRPKDRQQIQDRLKELRDIIPNGAKCSIDCLLDLTIKHMIFLKSITQCADKIKEAE 300
           ESTRPRPKDRQQIQDR+KEL+ IIP+GAKCSID LLD TIKHM+FL+S+T+ A+++K+A+
Sbjct: 235 ESTRPRPKDRQQIQDRIKELKQIIPDGAKCSIDALLDRTIKHMLFLQSVTKYAERLKQAD 294

Query: 301 EPKLIDKENEVVLKDNSTGGHSGGGCATWACEVEGPTLSCPIIVQDLSTPRQMLIEMVCE 360
           EP    KEN ++LKDN+T   SGG  ATWA EV   ++ CPIIV+DLS P  MLIEM+CE
Sbjct: 295 EP----KENRLLLKDNTTS--SGG--ATWALEVADQSMVCPIIVEDLSQPGLMLIEMLCE 346

Query: 361 DRGFFLEITDMIRGFGLNIWKGVMERREDKIWARFIVE 398
           DRGFFLE  D+I+GFGLNI KG+ME RE+KIWARFIVE
Sbjct: 347 DRGFFLETADVIKGFGLNILKGLMESRENKIWARFIVE 384

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555701|ref|XP_002518886.1| bhlh transcription factor, putative [Ricinus communis] gi|223541873|gb|EEF43419.1| bhlh transcription factor, putative [Ricinus communis]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/399 (54%), Positives = 268/399 (67%), Gaps = 28/399 (7%)

Query: 1   MCNNLLLSGGV-PVSYAMVEGDVTMVNPIMHPSSSVQSSTTDAFLANGQSKSELFHSVEN 59
           M  N+  S GV PVS ++V GDVT   P+  PS+S+QSS TD++    Q K+       N
Sbjct: 327 MVENVSQSAGVTPVSSSLV-GDVTHDIPLAQPSNSMQSSITDSYFCTRQEKT---IDTGN 382

Query: 60  DLFVGLGLNSGCAQADIGECWEDYIKPAVSGDHSAISTHMSECITELDVGSASGPCKGLF 119
           DLFV LGL+ GC Q     C E+ +K   S  + AIS  +SECI+ELDV S  GP KGLF
Sbjct: 383 DLFVHLGLHYGCEQD--ANCQENMMKRGTSNGNLAISNGVSECISELDVNSEVGPRKGLF 440

Query: 120 SELRLEELLRSSTNPSTIAKCSLEDQFFSPKRRKLESSSSNGNEVQRIKLPCSAGSISLV 179
           SEL LEELL    N S     S++DQF + K       S + N+ Q   + CS+GS  + 
Sbjct: 441 SELGLEELLNGGNNSSYTTNSSIDDQFSTAK-------SVSHNQAQSGSIACSSGS-KIT 492

Query: 180 QDVHNKQNTNNLVWKKDVLPKSQVGLWIDDSYSINAENAVAVSPQKPEKHMKLSKKRARP 239
           Q  + K   +NL+ KK++ PKSQVGLWIDDSYSIN  +A+   P+KPE+  K ++KRARP
Sbjct: 493 QPSYYKDKASNLLPKKEMFPKSQVGLWIDDSYSINDGSALPTKPKKPEEPTKATRKRARP 552

Query: 240 GESTRPRPKDRQQIQDRLKELRDIIPNGAKCSIDCLLDLTIKHMIFLKSITQCADKIKEA 299
           GESTRPRPKDRQQ QD +KEL+ IIP+G KCSID LLD TIK+M+FL+S+T+ ADK+K+A
Sbjct: 553 GESTRPRPKDRQQFQDCIKELKGIIPDGEKCSIDALLDHTIKYMLFLQSVTKYADKLKQA 612

Query: 300 EEPKLIDKENEVVLKDNSTGGHSGGGCATWACEVEGPTLSCPIIVQDLSTPRQMLIEMVC 359
           +EPK+                 SGGG ATWA EV   + +CPIIV+DLS P  MLIEM+C
Sbjct: 613 DEPKVYSCT-------------SGGGGATWALEVGDQSTACPIIVEDLSPPGLMLIEMLC 659

Query: 360 EDRGFFLEITDMIRGFGLNIWKGVMERREDKIWARFIVE 398
           EDRGFFLEI D+IRGFGLNI KGVME REDKIWA FIVE
Sbjct: 660 EDRGFFLEIADVIRGFGLNILKGVMETREDKIWAHFIVE 698

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456927|ref|XP_004146200.1| PREDICTED: transcription factor bHLH157-like [Cucumis sativus]

 Score =  318 bits (816), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 183/404 (45%), Positives = 246/404 (60%), Gaps = 21/404 (5%)

Query: 1   MCNNLLLSGGVPVSYAMVEGDVTMVNPIMHPSSSVQSSTTDAFLANGQSKSE-----LFH 55
           + +NLL   GV  S +    ++  VN  +  SS V   +  + + N    SE     +  
Sbjct: 349 LSHNLLHVTGVSTSSS----NLVEVNKFVDDSSKVSVVSAQSLITNTSKSSEQDNTIIMQ 404

Query: 56  SVENDLFVGLGLNSGCAQADIGECWEDYIKPAVSGDHSAISTHMSECITELDVGSASGPC 115
           + ++ LF  LGL +GC    +G+ W+  I     G +S     MS C ++L  GS   P 
Sbjct: 405 NAKDKLFDSLGLGTGCP---VGKTWDSMITD-THGSYSGGCNSMSTCTSKLATGSTDLPR 460

Query: 116 KGLFSELRLEELLRSSTNPSTIAKCSLEDQF-FSPKRRKLESSSSNGNEVQRIKLPCSAG 174
           K LF EL +EELL   +N S+  K S+E+      +R K+E  S + N +Q +  PC+  
Sbjct: 461 KRLFWELGIEELLDGLSNTSSATKSSVENHHSIGSRRSKMERLSFDSNPIQLLD-PCT-- 517

Query: 175 SISLVQDVHNKQNTNNLVWKKDVLPKSQVGLWIDDSYSINAENAVAVSPQKPEKHMKLSK 234
           S++L Q             KK+ +PKSQV  WIDDSYS N   ++     K E+  K+ K
Sbjct: 518 SMNLTQP---SCTVGRFPCKKEAVPKSQVSSWIDDSYSTNIGGSILELSHKSEEPAKICK 574

Query: 235 KRARPGESTRPRPKDRQQIQDRLKELRDIIPNGAKCSIDCLLDLTIKHMIFLKSITQCAD 294
           KRA+PGES RPRPKDRQQIQDR+KELR+IIP+GAKCSID LLD TIK+M+FL+S+T+ AD
Sbjct: 575 KRAKPGESNRPRPKDRQQIQDRIKELREIIPSGAKCSIDSLLDRTIKYMLFLQSVTKYAD 634

Query: 295 KIKEAEEPKLIDKENEVVLKDNSTGGHSGGGCATWACEVEGPTLSCPIIVQDLSTPRQML 354
           K+KE  +PKLID+ + V + D        GG  TWA +V      CP+IV+DLS+P QML
Sbjct: 635 KLKETNKPKLIDQRDGVAVNDKCITERGSGG-VTWAFKVGATPTVCPVIVEDLSSPGQML 693

Query: 355 IEMVCEDRGFFLEITDMIRGFGLNIWKGVMERREDKIWARFIVE 398
           +EM+CE+RGFFLEI DMIR +GL I KGVME REDKIW +F+VE
Sbjct: 694 VEMLCEERGFFLEIADMIRSYGLTILKGVMEIREDKIWGQFVVE 737

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533699|ref|XP_003535397.1| PREDICTED: uncharacterized protein LOC100813558 [Glycine max]

 Score =  313 bits (801), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 176/355 (49%), Positives = 219/355 (61%), Gaps = 19/355 (5%)

Query: 45  ANGQSKSELFHSVENDLFVGLGLNSGCAQADIGECWEDYIKPAVSGDHSAISTHMSECIT 104
           +NG+  S +  S E  LF  +  +    Q D  E W + + P VSG      T  SEC++
Sbjct: 421 SNGKEASVVMQSTEKGLFDSMEFDFSYDQGD--EWWGNMLSPVVSG---VTDTGFSECVS 475

Query: 105 ELDVGSA-SGPCKGLFSELRLEELLRSSTNPSTIAKCSLEDQFFSPKRRKLESSSSNGNE 163
           EL+   A +G  K LFSEL +EELLR   N +      LE +    K   +ESSS N N 
Sbjct: 476 ELNTTDALTGTRKRLFSELGIEELLRGGANYNPFNSSELEYELSPNKSETVESSSVNRNP 535

Query: 164 VQRIKLPCSAGSISLVQDVHNKQNTNNLVWKKDVLPKSQVGLWIDDSYSINAENAVAVSP 223
           +             L Q + +  NTNNL  KKD  PK Q G+WIDDS+SIN   AV V P
Sbjct: 536 IHFTNFHWPGARADLTQRLCDLDNTNNLPTKKDKFPKLQTGMWIDDSHSINIGKAVPVHP 595

Query: 224 QKPEKHMKLSKKRARPGESTRPRPKDRQQIQDRLKELRDIIPNGAKCSIDCLLDLTIKHM 283
           QKPE+  K SKKRARPGESTRPRPKDRQQIQD +KELR IIPN  KCSID LLD TI++M
Sbjct: 596 QKPEEPRKPSKKRARPGESTRPRPKDRQQIQDCIKELRRIIPNDGKCSIDSLLDRTIRYM 655

Query: 284 IFLKSITQCADKIKEAEEPKLIDKENEVVLKDNSTGGHSGGGCATWACEVEGPTLSCPII 343
           +FL+S+ + +DK++E  EPK+           NS    +GG   TWA EV   T+  P+I
Sbjct: 656 LFLQSVLKYSDKLQEPNEPKV-----------NSADSKNGG--ITWAYEVAHQTMLYPVI 702

Query: 344 VQDLSTPRQMLIEMVCEDRGFFLEITDMIRGFGLNIWKGVMERREDKIWARFIVE 398
           V+D+S P QMLIEM+CE++GFFLEI D I+ FGLNI K  MERR+ K+WARFIVE
Sbjct: 703 VEDMSLPGQMLIEMLCEEQGFFLEIIDKIQRFGLNILKAKMERRKTKLWARFIVE 757

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574827|ref|XP_003555546.1| PREDICTED: uncharacterized protein LOC100798158 [Glycine max]

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 176/356 (49%), Positives = 220/356 (61%), Gaps = 20/356 (5%)

Query: 45  ANGQSKSELFHSVENDLFVGLGLNSGCAQADIGECWEDYIKPAVSGDHSAISTHMSECIT 104
           + G+  S + HS EN L   L L+    QAD  E W + + P VSG      T  SECI+
Sbjct: 421 SEGKETSVVMHSTENALLDNLKLDFSYDQAD--EWWGNMLTPVVSG---VTDTGFSECIS 475

Query: 105 ELDVGSASGPCKGLFSELRLEELLRSSTNPSTIAKCSLEDQFFSP-KRRKLESSSSNGNE 163
           EL+    +G  K LFSEL ++ELLR   N +      LE +   P KR+ +ESSS N N 
Sbjct: 476 ELNTDIPTGTRKRLFSELGIDELLRGEANYNPFNSSELEHELLLPNKRQTVESSSVNRNS 535

Query: 164 VQRIKLPC-SAGSISLVQDVHNKQNTNNLVWKKDVLPKSQVGLWIDDSYSINAENAVAVS 222
           +    L         L Q   +  + NNL  KKD  PK Q G+W DDS+SIN   AV V 
Sbjct: 536 IPFTNLHWPGVARADLTQTFCDLDSANNLPTKKDKFPKLQTGMWNDDSHSINIGKAVPVH 595

Query: 223 PQKPEKHMKLSKKRARPGESTRPRPKDRQQIQDRLKELRDIIPNGAKCSIDCLLDLTIKH 282
           PQKPE+  K  KKRAR GESTRPRPKDRQQIQD +KELR +IPN  KCSID LLD TI++
Sbjct: 596 PQKPEEPAKPPKKRARAGESTRPRPKDRQQIQDCIKELRRLIPNDGKCSIDSLLDRTIRY 655

Query: 283 MIFLKSITQCADKIKEAEEPKLIDKENEVVLKDNSTGGHSGGGCATWACEVEGPTLSCPI 342
           M+FL+S+ + +DK++E  EPK+ D+          T  + G    TWA EV    + CPI
Sbjct: 656 MLFLQSVVKYSDKLQEPNEPKVTDQ----------TSKNCG---ITWAYEVAHQPMLCPI 702

Query: 343 IVQDLSTPRQMLIEMVCEDRGFFLEITDMIRGFGLNIWKGVMERREDKIWARFIVE 398
           IV+D+S P QMLIEM+CE++GFFLEI D+IR FGLNI K  MERR +K+WARFIVE
Sbjct: 703 IVEDMSLPGQMLIEMLCEEQGFFLEIIDIIRHFGLNILKAKMERRRNKLWARFIVE 758

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357136986|ref|XP_003570083.1| PREDICTED: uncharacterized protein LOC100841229 [Brachypodium distachyon]

 Score =  268 bits (684), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 152/293 (51%), Positives = 191/293 (65%), Gaps = 24/293 (8%)

Query: 116 KGLFSELRLEELLRSSTNPSTIAKCSLEDQFFS---PKRRKLESSSSNGNEVQRIKLPCS 172
           +GLFSE  LEELL +S  P+  +   L D F     P     +S S    +V     P S
Sbjct: 438 RGLFSESALEELLGAS--PAVASSDPLADCFSGCELPGYAHQDSYSLCKEQVPTSNFPSS 495

Query: 173 AGSISLVQDVHNKQNTNNLVWKKDVLPKSQVGLWIDDSYSINAENAVAVSPQKPEKHMKL 232
           +         H  +N +N V K   +P S   L +DD  S+N  N++    + PE   K 
Sbjct: 496 S---------HTSENMSNGVSK--AIPVSLANLSMDDCCSLNTANSMVGQVKNPEG-AKA 543

Query: 233 SKKRARPGESTRPRPKDRQQIQDRLKELRDIIPNGAKCSIDCLLDLTIKHMIFLKSITQC 292
            KKRARPGESTRPRPKDRQQIQDR+KELR+I+PN AKCSID LLD TIKHMIFL+ +T+ 
Sbjct: 544 IKKRARPGESTRPRPKDRQQIQDRVKELREIVPNSAKCSIDALLDRTIKHMIFLQGVTKY 603

Query: 293 ADKIKEAEEPKLIDKENEVVLKDNSTG-------GHSGGGCATWACEVEGPTLSCPIIVQ 345
           A+KIK+A+EPK+I K++  VL+DNS+G         +  G ATWA EV G T+ CPIIV+
Sbjct: 604 AEKIKQADEPKMISKDSGSVLRDNSSGVVLKDNSSAASNGGATWAYEVAGQTMVCPIIVE 663

Query: 346 DLSTPRQMLIEMVCEDRGFFLEITDMIRGFGLNIWKGVMERREDKIWARFIVE 398
           DL+ P QML+EM+CE+RGFFLEI D IRGFGL I KG+ME R+ KI ARF+VE
Sbjct: 664 DLAPPGQMLVEMLCEERGFFLEIADTIRGFGLTILKGLMELRDGKIMARFLVE 716

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	398
UNIPROTKB|Q5N9E6	904	P0505D12.13 "BHLH transcriptio	0.484	0.213	0.543	8.9e-55
UNIPROTKB|Q2QXE3	881	LOC_Os12g06330 "Expressed prot	0.484	0.219	0.55	4.4e-54
TAIR|locus:2039580	650	LHW "AT2G27230" [Arabidopsis t	0.459	0.281	0.505	1.2e-47
TAIR|locus:1005716759	527	AT1G64625 [Arabidopsis thalian	0.251	0.189	0.556	3.6e-46
TAIR|locus:2042551	720	CPUORF7 "conserved peptide ups	0.555	0.306	0.378	4e-34

UNIPROTKB|Q5N9E6 P0505D12.13 "BHLH transcription factor-like protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 571 (206.1 bits), Expect = 8.9e-55, P = 8.9e-55
 Identities = 113/208 (54%), Positives = 153/208 (73%)

Query:   200 KSQVGLWIDDSYSIN--------AENAVAVSPQKPEKHM-KLSKKRARPGESTRPRPKDR 250
             KSQ+ LW+++++S+         A ++++    K    + K ++KR+RPGES RPRPKDR
Sbjct:   648 KSQIRLWVENNHSVGSDSLSTGQASDSLSTGQCKRSDEIGKSNRKRSRPGESARPRPKDR 707

Query:   251 QQIQDRLKELRDIIPNGAKCSIDCLLDLTIKHMIFLKSITQCADKIKEAEEPKLIDKENE 310
             Q IQDR+KELR+I+PN AKCSID LL+ TIKHM+FL+++ + ADK+K + EPK++  E  
Sbjct:   708 QMIQDRIKELREIVPNSAKCSIDTLLEKTIKHMLFLQNVAKHADKLKGSGEPKIVSHEEG 767

Query:   311 VVLKDNSTGGHSGGGCATWACEVEGPTLSCPIIVQDLSTPRQMLIEMVCEDRGFFLEITD 370
             ++LKDN  GG      ATWA EV   +++CPIIV+DL+ PRQML+EM+C++RG FLEI D
Sbjct:   768 LLLKDNFEGG------ATWAFEVGTRSMTCPIIVEDLNPPRQMLVEMLCKERGIFLEIAD 821

Query:   371 MIRGFGLNIWKGVMERREDKIWARFIVE 398
              IRG GL I KGVME R+DKIWARF VE
Sbjct:   822 QIRGLGLTILKGVMEVRKDKIWARFAVE 849

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q2QXE3 LOC_Os12g06330 "Expressed protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 564 (203.6 bits), Expect = 4.4e-54, P = 4.4e-54
 Identities = 110/200 (55%), Positives = 147/200 (73%)

Query:   200 KSQVGLWIDDSYSINAENAVAVSPQKPEKHMKLSKKRARPGESTRPRPKDRQQIQDRLKE 259
             KSQ+ LWI+   ++  E+  A + +  +   K ++KR+RPGES +PRPKDRQ IQDR+KE
Sbjct:   633 KSQIRLWIESGQNMKCESVSASNSKGLDTANKANRKRSRPGESPKPRPKDRQLIQDRIKE 692

Query:   260 LRDIIPNGAKCSIDCLLDLTIKHMIFLKSITQCADKIKEAEEPKLIDK-ENEVVLKDNST 318
             LR+++PNGAKCSID LL+ TIKHM+FL+S+T+ AD +K++ E K+    EN  +LKD   
Sbjct:   693 LRELVPNGAKCSIDALLEKTIKHMVFLQSVTKHADNLKDSNESKIHGGGENGPLLKDYFE 752

Query:   319 GGHSGGGCATWACEVEGPTLSCPIIVQDLSTPRQMLIEMVCEDRGFFLEITDMIRGFGLN 378
             GG      ATWA +V   +++CPIIV+DL  PRQML+EM+CEDRG FLEI D I+G GL 
Sbjct:   753 GG------ATWAFDVGSQSMTCPIIVEDLDRPRQMLVEMLCEDRGIFLEIADFIKGLGLT 806

Query:   379 IWKGVMERREDKIWARFIVE 398
             I +GVME R++KIWARF VE
Sbjct:   807 ILRGVMEARKNKIWARFTVE 826

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2039580 LHW "AT2G27230" [Arabidopsis thaliana (taxid:3702)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 100/198 (50%), Positives = 137/198 (69%)

Query:   201 SQVGLWIDDSYSINAENAVAVSPQKPEKHMKLSKKRARPGESTRPRPKDRQQIQDRLKEL 260
             SQ+  W++ ++S+  E +  +  +        ++KR +PGE+ RPRPKDRQ IQDR+KEL
Sbjct:   419 SQISSWVEQAHSLKREGSPRMVNKNETAKPANNRKRLKPGENPRPRPKDRQMIQDRVKEL 478

Query:   261 RDIIPNGAKCSIDCLLDLTIKHMIFLKSITQCADKIKEAEEPKLIDKENEVVLKDNSTGG 320
             R+IIPNGAKCSID LL+ TIKHM+FL+++++ +DK+K+  E K++ KE+           
Sbjct:   479 REIIPNGAKCSIDALLERTIKHMLFLQNVSKHSDKLKQTGESKIM-KED----------- 526

Query:   321 HSGGGCATWACEVEGPTLSCPIIVQDLSTPRQMLIEMVCEDRGFFLEITDMIRGFGLNIW 380
               GGG ATWA EV   ++ CPI+V+D++ PR   +EM+CE RGFFLEI D IR  GL I 
Sbjct:   527 --GGG-ATWAFEVGSKSMVCPIVVEDINPPRIFQVEMLCEQRGFFLEIADWIRSLGLTIL 583

Query:   381 KGVMERREDKIWARFIVE 398
             KGV+E R DKIWARF VE
Sbjct:   584 KGVIETRVDKIWARFTVE 601

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0010078 "maintenance of root meristem identity" evidence=IMP

GO:0010479 "stele development" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0016569 "covalent chromatin modification" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:1005716759 AT1G64625 [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 3.6e-46, Sum P(3) = 3.6e-46
 Identities = 59/106 (55%), Positives = 80/106 (75%)

Query:   205 LWIDDSYSINAENAVAVSPQKPEKHMKLSKKRARPGESTRPRPKDRQQIQDRLKELRDII 264
             LWIDD    +  +++  + +KP +   + KKRA+ GES RPRPKDRQ IQDR+KELR +I
Sbjct:   327 LWIDD----DERSSIGGNWKKPHEE-GVKKKRAKAGESRRPRPKDRQMIQDRIKELRGMI 381

Query:   265 PNGAKCSIDCLLDLTIKHMIFLKSITQCADKIKEAEEPKLIDKENE 310
             PNGAKCSID LLDLTIKHM+F++S+ + A+++K+  E KL+ KE E
Sbjct:   382 PNGAKCSIDTLLDLTIKHMVFMQSLAKYAERLKQPYESKLV-KEKE 426

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2042551 CPUORF7 "conserved peptide upstream open reading frame 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 4.0e-34, P = 4.0e-34
 Identities = 93/246 (37%), Positives = 143/246 (58%)

Query:   154 LESSSSNGNEVQRIKLPC-SAGSISLVQDVHNKQNTNNLVWKKDVLPKSQVGLWIDDSYS 212
             +E +  +G +   I  P  SA +   + +V  +QN++++         S +G     +Y 
Sbjct:   471 MELAEPSGQKKHNIVNPINSAMNQPPMAEVDTQQNSSDICGAF-----SSIGF--SSTYP 523

Query:   213 INAENAVAVSPQKPEKHMKLSKKRARPGESTRPRPKDRQQIQDRLKELRDIIPNGAKCSI 272
              ++ +    S   P+K+    KKRA+PGES+RPRP+DRQ IQDR+KELR+++PNG+KCSI
Sbjct:   524 SSSSDQFQTSLDIPKKN----KKRAKPGESSRPRPRDRQLIQDRIKELRELVPNGSKCSI 579

Query:   273 DCLLDLTIKHMIFLKSITQCADKIKEAEEPKLIDKENEVVLKDNSTGGHSGGGCATWACE 332
             D LL+ TIKHM+FL+++T+ A+K+ ++   K+  KE           G  G  CA    E
Sbjct:   580 DSLLERTIKHMLFLQNVTKHAEKLSKSANEKMQQKET----------GMQGSSCAV---E 626

Query:   333 VEGPTLSCPIIVQDLSTPRQMLIEMVCEDRGFFLEITDMIRGFGLNIWKGVMERREDKIW 392
             V G      IIV++L+    +LIEM+CE+ G FLEI ++IR   L I +G  E + +K W
Sbjct:   627 VGGHLQVSSIIVENLNKQGMVLIEMLCEECGHFLEIANVIRSLDLVILRGFTETQGEKTW 686

Query:   393 ARFIVE 398
               F+ E
Sbjct:   687 ICFVTE 692


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.133   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      398       386   0.00092  117 3  11 22  0.43    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  263 KB (2138 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  35.74u 0.14s 35.88t   Elapsed:  00:00:02
  Total cpu time:  35.75u 0.14s 35.89t   Elapsed:  00:00:02
  Start:  Fri May 10 03:33:09 2013   End:  Fri May 10 03:33:11 2013

GO:0005634 "nucleus" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	398
smart00353	53	HLH helix loop helix domain.	98.14
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	98.03
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	97.82
KOG1319	229	consensus bHLHZip transcription factor BIGMAX [Tra	96.22
KOG1318	411	consensus Helix loop helix transcription factor EB	95.42
KOG4304	250	consensus Transcriptional repressors of the hairy/	95.25
KOG2483	232	consensus Upstream transcription factor 2/L-myc-2	91.41
KOG3561	803	consensus Aryl-hydrocarbon receptor nuclear transl	88.83
KOG2588	953	consensus Predicted DNA-binding protein [Transcrip	86.82

>smart00353 HLH helix loop helix domain

Probab=98.14  E-value=4.6e-06  Score=59.71  Aligned_cols=45  Identities=31%  Similarity=0.467  Sum_probs=40.7

Q ss_pred             chhhhHHHHHHHHHhhcCC---CCcccchhhhHHHHHHHHHHHHHhhh
Q 038975          247 PKDRQQIQDRLKELRDIIP---NGAKCSIDCLLDLTIKHMIFLKSITQ  291 (398)
Q Consensus       247 pkdRq~IqdR~KeLr~lVP---NG~KcsId~lLe~tI~~m~FLq~~~k  291 (398)
                      .+||+.|++++.+|+.+||   .+.|.|-.++|++||+|+++||...+
T Consensus         5 r~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        5 RRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            3799999999999999999   57789999999999999999997653

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=98.03  E-value=9.6e-06  Score=58.73  Aligned_cols=43  Identities=26%  Similarity=0.412  Sum_probs=40.8

Q ss_pred             hhhhHHHHHHHHHhhcCCCC---cccchhhhHHHHHHHHHHHHHhh
Q 038975          248 KDRQQIQDRLKELRDIIPNG---AKCSIDCLLDLTIKHMIFLKSIT  290 (398)
Q Consensus       248 kdRq~IqdR~KeLr~lVPNG---~KcsId~lLe~tI~~m~FLq~~~  290 (398)
                      +||+.|++++.+|+.+||..   .|.|-.++|+.||.|+.+||...
T Consensus        14 ~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~   59 (60)
T cd00083          14 RRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL   59 (60)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            79999999999999999999   88999999999999999999764

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=97.82  E-value=2.7e-05  Score=56.82  Aligned_cols=40  Identities=30%  Similarity=0.493  Sum_probs=37.7

Q ss_pred             hhhhHHHHHHHHHhhcCCCC-----cccchhhhHHHHHHHHHHHH
Q 038975          248 KDRQQIQDRLKELRDIIPNG-----AKCSIDCLLDLTIKHMIFLK  287 (398)
Q Consensus       248 kdRq~IqdR~KeLr~lVPNG-----~KcsId~lLe~tI~~m~FLq  287 (398)
                      +||..|++.+.+|+++||..     .|.|-.++|+.||.|+++||
T Consensus        11 ~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen   11 RRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            78999999999999999986     67899999999999999998

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]

Probab=96.22  E-value=0.0016  Score=61.85  Aligned_cols=86  Identities=24%  Similarity=0.318  Sum_probs=60.3

Q ss_pred             CCcccccccccccCCCCCCCCCCchhhhHHHHHHHHHhhcCCC-------CcccchhhhHHHHHHHHHHHHHhhhhhhhh
Q 038975          224 QKPEKHMKLSKKRARPGESTRPRPKDRQQIQDRLKELRDIIPN-------GAKCSIDCLLDLTIKHMIFLKSITQCADKI  296 (398)
Q Consensus       224 k~~~~~~k~~kkRar~Ge~~rPrpkdRq~IqdR~KeLr~lVPN-------G~KcsId~lLe~tI~~m~FLq~~~k~adKl  296 (398)
                      .++.+..|-.-|-.|+..-++--.|||+.|+.--.-|++|||-       |-|.+-..+|-++|.||.||-...+.+|+=
T Consensus        48 ~~hS~a~k~syk~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e  127 (229)
T KOG1319|consen   48 DYHSEAYKESYKDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEE  127 (229)
T ss_pred             cchhHHHHhhHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444333433344444455666679999999999999999994       446788899999999999999888887762


Q ss_pred             -----hhccccchhcccc
Q 038975          297 -----KEAEEPKLIDKEN  309 (398)
Q Consensus       297 -----k~~~e~k~~~~~~  309 (398)
                           |+..--+||..+-
T Consensus       128 ~s~L~k~vtAL~iIk~~Y  145 (229)
T KOG1319|consen  128 VSTLRKDVTALKIIKVNY  145 (229)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence                 3333445555443

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=95.42  E-value=0.019  Score=59.02  Aligned_cols=50  Identities=28%  Similarity=0.413  Sum_probs=41.3

Q ss_pred             chhhhHHHHHHHHHhhcCCCC----cccchhhhHHHHHHHHHHHHHhhhhhhhh
Q 038975          247 PKDRQQIQDRLKELRDIIPNG----AKCSIDCLLDLTIKHMIFLKSITQCADKI  296 (398)
Q Consensus       247 pkdRq~IqdR~KeLr~lVPNG----~KcsId~lLe~tI~~m~FLq~~~k~adKl  296 (398)
                      +|||+.|++|||||-+|||.-    .|-.+-+.|-+++.|..-||.--..|-++
T Consensus       242 RRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~  295 (411)
T KOG1318|consen  242 RRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRAREL  295 (411)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999965    24468899999999999998766654443

>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]

Probab=95.25  E-value=0.01  Score=56.94  Aligned_cols=45  Identities=36%  Similarity=0.524  Sum_probs=39.3

Q ss_pred             hhhhHHHHHHHHHhhcCCCCccc--------chhhhHHHHHHHHHHHHHhhhh
Q 038975          248 KDRQQIQDRLKELRDIIPNGAKC--------SIDCLLDLTIKHMIFLKSITQC  292 (398)
Q Consensus       248 kdRq~IqdR~KeLr~lVPNG~Kc--------sId~lLe~tI~~m~FLq~~~k~  292 (398)
                      |||-|||..|-||+.|||.-.|-        .-..+||-||+||+-||.....
T Consensus        42 kRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~   94 (250)
T KOG4304|consen   42 KRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA   94 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence            99999999999999999986654        4578899999999999987654

>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]

Probab=91.41  E-value=0.85  Score=43.97  Aligned_cols=45  Identities=20%  Similarity=0.336  Sum_probs=38.9

Q ss_pred             chhhhHHHHHHHHHhhcCCCCcccc---hhhhHHHHHHHHHHHHHhhh
Q 038975          247 PKDRQQIQDRLKELRDIIPNGAKCS---IDCLLDLTIKHMIFLKSITQ  291 (398)
Q Consensus       247 pkdRq~IqdR~KeLr~lVPNG~Kcs---Id~lLe~tI~~m~FLq~~~k  291 (398)
                      .+||-.|.+++..|+.+||+|.-|.   --++|++|+.|+.-||....
T Consensus        68 k~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~  115 (232)
T KOG2483|consen   68 KRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSA  115 (232)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHH
Confidence            4899999999999999999988764   45799999999999986543

>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]

Probab=88.83  E-value=0.39  Score=53.23  Aligned_cols=59  Identities=22%  Similarity=0.393  Sum_probs=47.9

Q ss_pred             cccccCCCCCCCCCCchhhhHHHHHHHHHhhcCCCCc----ccchhhhHHHHHHHHHHHHHhh
Q 038975          232 LSKKRARPGESTRPRPKDRQQIQDRLKELRDIIPNGA----KCSIDCLLDLTIKHMIFLKSIT  290 (398)
Q Consensus       232 ~~kkRar~Ge~~rPrpkdRq~IqdR~KeLr~lVPNG~----KcsId~lLe~tI~~m~FLq~~~  290 (398)
                      -.|+|++|.....--.|||++.+-=|+||-+|||--+    |-|--|.|.+||+||+=+.-++
T Consensus        14 d~k~r~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~~   76 (803)
T KOG3561|consen   14 DSKDRKKRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQE   76 (803)
T ss_pred             cchhhhccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhhh
Confidence            3455555554444456999999999999999999776    8999999999999999887764

>KOG2588 consensus Predicted DNA-binding protein [Transcription]

Probab=86.82  E-value=0.82  Score=51.56  Aligned_cols=63  Identities=30%  Similarity=0.409  Sum_probs=46.4

Q ss_pred             ccccccCCCCCCCCCC-----chhhhHHHHHHHHHhhcCC-CCcccchhhhHHHHHHHHHHHHHhhhhh
Q 038975          231 KLSKKRARPGESTRPR-----PKDRQQIQDRLKELRDIIP-NGAKCSIDCLLDLTIKHMIFLKSITQCA  293 (398)
Q Consensus       231 k~~kkRar~Ge~~rPr-----pkdRq~IqdR~KeLr~lVP-NG~KcsId~lLe~tI~~m~FLq~~~k~a  293 (398)
                      |+..+|..+|+..|--     .|=|--|||||-|||.+|| --+|-.-++-|.+||+|..|||-.-..+
T Consensus       264 k~Pi~rl~~G~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~l  332 (953)
T KOG2588|consen  264 KKPIKRLLPGGEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKL  332 (953)
T ss_pred             cCchhhcCCCCcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhcccccc
Confidence            5667788888222221     1678889999999999999 3345556678999999999999764443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	398
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 20/139 (14%), Positives = 50/139 (35%), Gaps = 24/139 (17%)

Query: 178 LVQDVHNKQNTNNLVWKKDVLPKSQVGLWIDDSYSINAE---NAVAVSPQKPEKHMKL-S 233
           ++        T  L W      +  V  ++++   IN +   + +    ++P    ++  
Sbjct: 54  IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113

Query: 234 KKRARPGESTR-------PRPKDRQQIQDRLKELRD---IIPNGAK-C-----SIDCLLD 277
           ++R R     +        R +   +++  L ELR    ++ +G         ++D  L 
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 278 LTIKHM----IFLKSITQC 292
             ++      IF  ++  C
Sbjct: 174 YKVQCKMDFKIFWLNLKNC 192

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	398
4ati_A	118	MITF, microphthalmia-associated transcription fact	98.47
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	98.42
1a0a_A	63	BHLH, protein (phosphate system positive regulator	98.33
4h10_B	71	Circadian locomoter output cycles protein kaput; B	98.32
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	98.18
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	98.11
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	97.92
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	97.74
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	97.73
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	97.67
4f3l_A	361	Mclock, circadian locomoter output cycles protein	97.2
4ath_A	83	MITF, microphthalmia-associated transcription fact	96.96
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	96.87
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	96.81
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	96.43
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	96.37
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	95.7
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	88.23

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=98.47  E-value=1.5e-07  Score=78.95  Aligned_cols=62  Identities=23%  Similarity=0.344  Sum_probs=43.7

Q ss_pred             cccCCCCCCCCCCc----hhhhHHHHHHHHHhhcCCCCc----ccchhhhHHHHHHHHHHHHHhhhhhhh
Q 038975          234 KKRARPGESTRPRP----KDRQQIQDRLKELRDIIPNGA----KCSIDCLLDLTIKHMIFLKSITQCADK  295 (398)
Q Consensus       234 kkRar~Ge~~rPrp----kdRq~IqdR~KeLr~lVPNG~----KcsId~lLe~tI~~m~FLq~~~k~adK  295 (398)
                      +.+++.+....++.    +||..|++++.+|+.|||+..    |.+-.++|++||.||++||.+.+....
T Consensus        19 ~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~   88 (118)
T 4ati_A           19 RALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD   88 (118)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555664    999999999999999999875    568999999999999999998776543

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=98.42  E-value=2.5e-07  Score=73.00  Aligned_cols=46  Identities=28%  Similarity=0.408  Sum_probs=43.1

Q ss_pred             hhhhHHHHHHHHHhhcCCCC-cccchhhhHHHHHHHHHHHHHhhhhh
Q 038975          248 KDRQQIQDRLKELRDIIPNG-AKCSIDCLLDLTIKHMIFLKSITQCA  293 (398)
Q Consensus       248 kdRq~IqdR~KeLr~lVPNG-~KcsId~lLe~tI~~m~FLq~~~k~a  293 (398)
                      +||+.|++++.+|+.|||++ .|.|-.++|++||.|+++||.+.+..
T Consensus        16 rRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L   62 (82)
T 1am9_A           16 RYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKL   62 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999997 89999999999999999999887753

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=98.33  E-value=2.8e-07  Score=70.14  Aligned_cols=43  Identities=21%  Similarity=0.255  Sum_probs=38.8

Q ss_pred             hhhhHHHHHHHHHhhcCCCC-------cccchhhhHHHHHHHHHHHHHhh
Q 038975          248 KDRQQIQDRLKELRDIIPNG-------AKCSIDCLLDLTIKHMIFLKSIT  290 (398)
Q Consensus       248 kdRq~IqdR~KeLr~lVPNG-------~KcsId~lLe~tI~~m~FLq~~~  290 (398)
                      +||.+|++++++|+.|||+.       .|-+..++|+.||+|+++||.+.
T Consensus        12 ~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~   61 (63)
T 1a0a_A           12 ARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence            79999999999999999964       56679999999999999999754

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=98.32  E-value=6.5e-07  Score=70.41  Aligned_cols=46  Identities=28%  Similarity=0.348  Sum_probs=42.0

Q ss_pred             hhhhHHHHHHHHHhhcCCCC-cccchhhhHHHHHHHHHHHHHhhhhh
Q 038975          248 KDRQQIQDRLKELRDIIPNG-AKCSIDCLLDLTIKHMIFLKSITQCA  293 (398)
Q Consensus       248 kdRq~IqdR~KeLr~lVPNG-~KcsId~lLe~tI~~m~FLq~~~k~a  293 (398)
                      +||.+||++|.+|+.|||.+ .|.+-.++|+.||.|+++||..+...
T Consensus        18 rRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~   64 (71)
T 4h10_B           18 KRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWL   64 (71)
T ss_dssp             HHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHH
Confidence            79999999999999999964 59999999999999999999887653

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=98.18  E-value=6.4e-07  Score=70.33  Aligned_cols=43  Identities=21%  Similarity=0.412  Sum_probs=39.4

Q ss_pred             chhhhHHHHHHHHHhhcCCCC----cccchhhhHHHHHHHHHHHHHh
Q 038975          247 PKDRQQIQDRLKELRDIIPNG----AKCSIDCLLDLTIKHMIFLKSI  289 (398)
Q Consensus       247 pkdRq~IqdR~KeLr~lVPNG----~KcsId~lLe~tI~~m~FLq~~  289 (398)
                      .+||++||+++.+|+.|||..    .|.|-.++|+.||.||+.||..
T Consensus        18 RrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~   64 (73)
T 4h10_A           18 KRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA   64 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcC
Confidence            389999999999999999975    7999999999999999999853

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=98.11  E-value=1.1e-06  Score=65.89  Aligned_cols=43  Identities=21%  Similarity=0.315  Sum_probs=39.7

Q ss_pred             hhhhHHHHHHHHHhhcCCCCc------ccchhhhHHHHHHHHHHHHHhh
Q 038975          248 KDRQQIQDRLKELRDIIPNGA------KCSIDCLLDLTIKHMIFLKSIT  290 (398)
Q Consensus       248 kdRq~IqdR~KeLr~lVPNG~------KcsId~lLe~tI~~m~FLq~~~  290 (398)
                      +||+.|++++.+|+.|||+..      |.|-.++|+.||.|+++||...
T Consensus        15 ~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~   63 (65)
T 1an4_A           15 RRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence            899999999999999999876      6799999999999999999754

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=97.92  E-value=1.2e-05  Score=62.73  Aligned_cols=45  Identities=29%  Similarity=0.531  Sum_probs=41.6

Q ss_pred             hhhhHHHHHHHHHhhcCCC--CcccchhhhHHHHHHHHHHHHHhhhh
Q 038975          248 KDRQQIQDRLKELRDIIPN--GAKCSIDCLLDLTIKHMIFLKSITQC  292 (398)
Q Consensus       248 kdRq~IqdR~KeLr~lVPN--G~KcsId~lLe~tI~~m~FLq~~~k~  292 (398)
                      +||+.|++++.+|+.+||.  +.|.|-.++|..||.|+++||...+.
T Consensus        12 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~   58 (83)
T 1nkp_B           12 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHT   58 (83)
T ss_dssp             HHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999997  68999999999999999999976654

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=97.74  E-value=3.6e-05  Score=61.74  Aligned_cols=45  Identities=20%  Similarity=0.304  Sum_probs=41.7

Q ss_pred             hhhhHHHHHHHHHhhcCCC---CcccchhhhHHHHHHHHHHHHHhhhh
Q 038975          248 KDRQQIQDRLKELRDIIPN---GAKCSIDCLLDLTIKHMIFLKSITQC  292 (398)
Q Consensus       248 kdRq~IqdR~KeLr~lVPN---G~KcsId~lLe~tI~~m~FLq~~~k~  292 (398)
                      +||..|++++..||.+||+   +.|.|-.++|.+||.|+.+||...+.
T Consensus        16 ~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~   63 (88)
T 1nkp_A           16 QRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQK   63 (88)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999997   46999999999999999999988664

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=97.73  E-value=3.3e-05  Score=60.18  Aligned_cols=46  Identities=28%  Similarity=0.514  Sum_probs=41.8

Q ss_pred             hhhhHHHHHHHHHhhcCCC--CcccchhhhHHHHHHHHHHHHHhhhhh
Q 038975          248 KDRQQIQDRLKELRDIIPN--GAKCSIDCLLDLTIKHMIFLKSITQCA  293 (398)
Q Consensus       248 kdRq~IqdR~KeLr~lVPN--G~KcsId~lLe~tI~~m~FLq~~~k~a  293 (398)
                      +||+.|++++.+||.+||.  +.|.|-.++|..||.|+++||...+..
T Consensus        22 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L   69 (80)
T 1hlo_A           22 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTH   69 (80)
T ss_dssp             HHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999997  479999999999999999999876653

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=97.67  E-value=2.5e-05  Score=61.66  Aligned_cols=46  Identities=17%  Similarity=0.257  Sum_probs=40.8

Q ss_pred             hhhhHHHHHHHHHhhcCCC---Cccc-chhhhHHHHHHHHHHHHHhhhhh
Q 038975          248 KDRQQIQDRLKELRDIIPN---GAKC-SIDCLLDLTIKHMIFLKSITQCA  293 (398)
Q Consensus       248 kdRq~IqdR~KeLr~lVPN---G~Kc-sId~lLe~tI~~m~FLq~~~k~a  293 (398)
                      +||+.|++++.+||.+||+   +.|. +-.+.|.+||.|+.+||.+.+..
T Consensus        15 ~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~   64 (76)
T 3u5v_A           15 KRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRER   64 (76)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999996   5666 67789999999999999988753

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=97.20  E-value=0.00026  Score=65.94  Aligned_cols=46  Identities=28%  Similarity=0.355  Sum_probs=41.6

Q ss_pred             CchhhhHHHHHHHHHhhcCC-CCcccchhhhHHHHHHHHHHHHHhhh
Q 038975          246 RPKDRQQIQDRLKELRDIIP-NGAKCSIDCLLDLTIKHMIFLKSITQ  291 (398)
Q Consensus       246 rpkdRq~IqdR~KeLr~lVP-NG~KcsId~lLe~tI~~m~FLq~~~k  291 (398)
                      -.+||++||++|.+|+.||| +..|-|-.++|..||.|++-+|.+..
T Consensus        20 e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~~   66 (361)
T 4f3l_A           20 EKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETTA   66 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhcc
Confidence            35999999999999999999 66799999999999999999987754

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=96.96  E-value=0.0012  Score=53.79  Aligned_cols=45  Identities=29%  Similarity=0.416  Sum_probs=38.7

Q ss_pred             hhHHHHHHHHHhhcCCC----CcccchhhhHHHHHHHHHHHHHhhhhhh
Q 038975          250 RQQIQDRLKELRDIIPN----GAKCSIDCLLDLTIKHMIFLKSITQCAD  294 (398)
Q Consensus       250 Rq~IqdR~KeLr~lVPN----G~KcsId~lLe~tI~~m~FLq~~~k~ad  294 (398)
                      |--|++|||||..|||.    ..|-+-.++|-+||.|+.+||....++.
T Consensus         4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~   52 (83)
T 4ath_A            4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAK   52 (83)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            77899999999999995    2567899999999999999998665543

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=96.87  E-value=0.0017  Score=51.42  Aligned_cols=46  Identities=22%  Similarity=0.338  Sum_probs=41.2

Q ss_pred             hhhhHHHHHHHHHhhcCCCC---cccchhhhHHHHHHHHHHHHHhhhhh
Q 038975          248 KDRQQIQDRLKELRDIIPNG---AKCSIDCLLDLTIKHMIFLKSITQCA  293 (398)
Q Consensus       248 kdRq~IqdR~KeLr~lVPNG---~KcsId~lLe~tI~~m~FLq~~~k~a  293 (398)
                      +||..|++++-.||.+||++   .|.|-..+|.+|+.|+.+||...+..
T Consensus        11 ~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l   59 (80)
T 1nlw_A           11 NRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKA   59 (80)
T ss_dssp             HHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999965   67888999999999999999887644

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=96.81  E-value=0.0015  Score=50.56  Aligned_cols=43  Identities=9%  Similarity=0.167  Sum_probs=39.4

Q ss_pred             hhhhHHHHHHHHHhhcCCC--CcccchhhhHHHHHHHHHHHHHhh
Q 038975          248 KDRQQIQDRLKELRDIIPN--GAKCSIDCLLDLTIKHMIFLKSIT  290 (398)
Q Consensus       248 kdRq~IqdR~KeLr~lVPN--G~KcsId~lLe~tI~~m~FLq~~~  290 (398)
                      +|++.|++....||.+||.  +.|-|--..|..||.|+.|||.+.
T Consensus        22 ~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L   66 (68)
T 1mdy_A           22 RRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL   66 (68)
T ss_dssp             HHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999997  578999999999999999999764

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=96.43  E-value=0.0047  Score=46.67  Aligned_cols=44  Identities=23%  Similarity=0.246  Sum_probs=39.6

Q ss_pred             hhhhHHHHHHHHHhhcCCC---CcccchhhhHHHHHHHHHHHHHhhh
Q 038975          248 KDRQQIQDRLKELRDIIPN---GAKCSIDCLLDLTIKHMIFLKSITQ  291 (398)
Q Consensus       248 kdRq~IqdR~KeLr~lVPN---G~KcsId~lLe~tI~~m~FLq~~~k  291 (398)
                      +|++.|++....||.+||.   +.|.|--..|..||.|+.+||.+..
T Consensus        12 ~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~   58 (60)
T 2ql2_B           12 NRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR   58 (60)
T ss_dssp             HHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence            6789999999999999986   5588999999999999999998754

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=96.37  E-value=0.0025  Score=60.28  Aligned_cols=44  Identities=23%  Similarity=0.419  Sum_probs=40.0

Q ss_pred             chhhhHHHHHHHHHhhcCC----CCcccchhhhHHHHHHHHHHHHHhh
Q 038975          247 PKDRQQIQDRLKELRDIIP----NGAKCSIDCLLDLTIKHMIFLKSIT  290 (398)
Q Consensus       247 pkdRq~IqdR~KeLr~lVP----NG~KcsId~lLe~tI~~m~FLq~~~  290 (398)
                      .+||.+||++|.||+.|||    ...|-|--++|..||.|++.||...
T Consensus        22 k~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~~   69 (387)
T 4f3l_B           22 KRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGAT   69 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC-
T ss_pred             hcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhccc
Confidence            4899999999999999999    7889999999999999999998543

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=95.70  E-value=0.017  Score=45.55  Aligned_cols=42  Identities=19%  Similarity=0.282  Sum_probs=37.1

Q ss_pred             chhhhHHHHHHHHHhhcCCC---CcccchhhhHHHHHHHHHHHHH
Q 038975          247 PKDRQQIQDRLKELRDIIPN---GAKCSIDCLLDLTIKHMIFLKS  288 (398)
Q Consensus       247 pkdRq~IqdR~KeLr~lVPN---G~KcsId~lLe~tI~~m~FLq~  288 (398)
                      .+|++.+|+.+.+||++||+   +.|.|--..|..||.|+.+||.
T Consensus        23 R~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           23 LSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             SCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence            35778999999999999974   5788989999999999999995

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=88.23  E-value=0.58  Score=38.94  Aligned_cols=44  Identities=18%  Similarity=0.247  Sum_probs=38.1

Q ss_pred             hhhHHHHHHHHHhhcCCC---CcccchhhhHHHHHHHHHHHHHhhhh
Q 038975          249 DRQQIQDRLKELRDIIPN---GAKCSIDCLLDLTIKHMIFLKSITQC  292 (398)
Q Consensus       249 dRq~IqdR~KeLr~lVPN---G~KcsId~lLe~tI~~m~FLq~~~k~  292 (398)
                      |-+.+|+-...||++||.   +.|-|--..|..||.|+.+||.+...
T Consensus        36 Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~   82 (97)
T 4aya_A           36 LLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS   82 (97)
T ss_dssp             HHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence            556799999999999985   56888888899999999999988765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	398
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	0.002

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (79), Expect = 0.002
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 250 RQQIQDRLKELRDIIPNG-AKCSIDCLLDLTIKHMIFLKS 288
           R  I D++ EL+D++    AK     +L   I ++ +L+ 
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQ 40

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	398
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	98.44
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	98.21
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	98.19
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	97.96
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	97.92
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	97.89
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	97.82
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	97.59

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=4.7e-08  Score=71.65  Aligned_cols=44  Identities=23%  Similarity=0.397  Sum_probs=40.6

Q ss_pred             hhHHHHHHHHHhhcCCCCc-ccchhhhHHHHHHHHHHHHHhhhhh
Q 038975          250 RQQIQDRLKELRDIIPNGA-KCSIDCLLDLTIKHMIFLKSITQCA  293 (398)
Q Consensus       250 Rq~IqdR~KeLr~lVPNG~-KcsId~lLe~tI~~m~FLq~~~k~a  293 (398)
                      |..|+||+.+||.|||+.. |.|-.++|.+||+|++|||.+.+..
T Consensus         1 R~~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L   45 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKL   45 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            7789999999999999874 9999999999999999999988754

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.21  E-value=4.9e-07  Score=66.19  Aligned_cols=44  Identities=20%  Similarity=0.257  Sum_probs=40.1

Q ss_pred             chhhhHHHHHHHHHhhcCCC-------CcccchhhhHHHHHHHHHHHHHhh
Q 038975          247 PKDRQQIQDRLKELRDIIPN-------GAKCSIDCLLDLTIKHMIFLKSIT  290 (398)
Q Consensus       247 pkdRq~IqdR~KeLr~lVPN-------G~KcsId~lLe~tI~~m~FLq~~~  290 (398)
                      .+||++|++.+.+|+.|||.       +.|.|-.++|+.||+|+++||..+
T Consensus        11 r~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_          11 QARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhh
Confidence            38999999999999999993       688999999999999999999754

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.19  E-value=7.9e-07  Score=66.31  Aligned_cols=44  Identities=9%  Similarity=0.175  Sum_probs=40.6

Q ss_pred             hhhhHHHHHHHHHhhcCCC--CcccchhhhHHHHHHHHHHHHHhhh
Q 038975          248 KDRQQIQDRLKELRDIIPN--GAKCSIDCLLDLTIKHMIFLKSITQ  291 (398)
Q Consensus       248 kdRq~IqdR~KeLr~lVPN--G~KcsId~lLe~tI~~m~FLq~~~k  291 (398)
                      +||+.|++++.+||.|||.  +.|.|-.++|+.||+|+.|||.+.+
T Consensus        22 ~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~   67 (68)
T d1mdya_          22 RRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            8899999999999999997  5689999999999999999997754

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=5.7e-06  Score=62.12  Aligned_cols=46  Identities=22%  Similarity=0.338  Sum_probs=41.5

Q ss_pred             hhhhHHHHHHHHHhhcCCCC---cccchhhhHHHHHHHHHHHHHhhhhh
Q 038975          248 KDRQQIQDRLKELRDIIPNG---AKCSIDCLLDLTIKHMIFLKSITQCA  293 (398)
Q Consensus       248 kdRq~IqdR~KeLr~lVPNG---~KcsId~lLe~tI~~m~FLq~~~k~a  293 (398)
                      +||+.|++++.+|+.+||++   .|.|-.++|++||.|+++||...+..
T Consensus        11 ~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l   59 (79)
T d1nlwa_          11 NRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKA   59 (79)
T ss_dssp             HHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999965   47899999999999999999877654

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=6.3e-06  Score=62.40  Aligned_cols=45  Identities=29%  Similarity=0.530  Sum_probs=41.2

Q ss_pred             hhhhHHHHHHHHHhhcCC--CCcccchhhhHHHHHHHHHHHHHhhhh
Q 038975          248 KDRQQIQDRLKELRDIIP--NGAKCSIDCLLDLTIKHMIFLKSITQC  292 (398)
Q Consensus       248 kdRq~IqdR~KeLr~lVP--NG~KcsId~lLe~tI~~m~FLq~~~k~  292 (398)
                      +||+.|++++.+|+.+||  ++.|.|-.++|+.||.|+++||.....
T Consensus        12 ~RR~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~yI~~L~~~~~~   58 (83)
T d1nkpb_          12 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHT   58 (83)
T ss_dssp             HHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            799999999999999999  478999999999999999999877544

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=6.8e-06  Score=62.20  Aligned_cols=45  Identities=29%  Similarity=0.426  Sum_probs=41.4

Q ss_pred             hhhhHHHHHHHHHhhcCCCC-cccchhhhHHHHHHHHHHHHHhhhh
Q 038975          248 KDRQQIQDRLKELRDIIPNG-AKCSIDCLLDLTIKHMIFLKSITQC  292 (398)
Q Consensus       248 kdRq~IqdR~KeLr~lVPNG-~KcsId~lLe~tI~~m~FLq~~~k~  292 (398)
                      +||+.|++++.+|+.|||+. .|.|-.++|++||.|+.+||...+.
T Consensus        16 ~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~   61 (80)
T d1am9a_          16 RYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK   61 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999974 5899999999999999999987654

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=1.2e-05  Score=61.39  Aligned_cols=47  Identities=19%  Similarity=0.222  Sum_probs=41.9

Q ss_pred             hhhhHHHHHHHHHhhcCCCC---cccchhhhHHHHHHHHHHHHHhhhhhh
Q 038975          248 KDRQQIQDRLKELRDIIPNG---AKCSIDCLLDLTIKHMIFLKSITQCAD  294 (398)
Q Consensus       248 kdRq~IqdR~KeLr~lVPNG---~KcsId~lLe~tI~~m~FLq~~~k~ad  294 (398)
                      +||+.|++.+.+|+.+||+.   .|-|..++|.+||+|+++||.......
T Consensus        16 ~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~   65 (88)
T d1nkpa_          16 QRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLI   65 (88)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999964   567999999999999999998876653

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=1.3e-05  Score=58.68  Aligned_cols=42  Identities=21%  Similarity=0.307  Sum_probs=38.0

Q ss_pred             hhhhHHHHHHHHHhhcCCC------CcccchhhhHHHHHHHHHHHHHh
Q 038975          248 KDRQQIQDRLKELRDIIPN------GAKCSIDCLLDLTIKHMIFLKSI  289 (398)
Q Consensus       248 kdRq~IqdR~KeLr~lVPN------G~KcsId~lLe~tI~~m~FLq~~  289 (398)
                      +||+.|++.+.+|+.|||.      +.|-|-.++|.+||.|+.+||..
T Consensus        15 ~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~~   62 (65)
T d1an4a_          15 RRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQS   62 (65)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            8999999999999999995      34778889999999999999964