Citrus Sinensis ID: 038979

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600------
SAAGVQLHEQNNHVVMNNGILQVSISTPQGFVIGIQYKGNKNLLNVQNEEDNRGIEATNYKVIMRTKEQVELSFTRMWQPYTNGTIAPVNIDKRFLMLRGSSGFYSYAIYKRLKGWPGFQLFNNRMVFKPNPDKFHYMIISGNRQREMPLQQDRERGHKLAYEEAVLLPNGEVDDKYQYSMDAKDIRVHGWISTDSTVGFWQILPSSESRSFGPLKQFLTSHTGPISINTFHSTHYVGENFGMKFKDGEAWKKIFGPFLVYVNSVAGKGDRQMLWRDANRQFMNEVKSWPYKFPASKDFARSNKRGSISGRLIVKDRYVSRAGIAAKGAYVGLAKPGRAGSWQTECKGYQFWTVANEGGNFSIKNVLIGNYNLYAWIPGFIGDFKYHAAIRITAGSAKQIGNLVYKAPRNGPTLWEIGIPDRSAAEFYIPNPNPKYINKLYVKHDRFRQYGLWERYAELHRKRDLVYEVWANNYRKDWYFAQNTRKKGNKYEGSTWQIQFKLEGVVKKATYKLRVAVAAAHGAELQVRVNSRSARRPLFSSGSVGRENAIARHGIHGVYKLFNVDVPGKVLRKGNNTIYLSQPRKLDAFTGIMYDYLRFEGPDPNS
ccccEEEEEEccEEEEEccEEEEEEEcccEEEEEEEEccEEcccccccccccccccccEEEEEEEcccEEEEEEEEEEcccccccccccccEEEEEEEcccccEEEEEEEEEccccccccccccEEEEEccccccccEEEEcccccccccccccccccEEEEEEEEEccccEEcccEEEcccccEEcEEEEEEccccEEEEEEccccccccccccEEcccccccccEEEEEEEccccccccccccccccccEEEEcEEEEEEccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEEEEcccccccccccccEEEEcccccccccEEEccccEEEEEEcccccEEEccEEcEEEEEEEEEccEEEEEEEEEEEEEccccEEEEccEEEEccccccccEEEccccccccccccccccccccccccccccccccccccHHHHHcccccccEEEEEccccccccccccccccccccccccEEEEEEEEccccccccEEEEEEEccccccEEEEEEcccccccccccccccccccEEEEEEEEEEEEEEEEEEEcccEEEEccEEEEEEEcccccccEEEEEEEEEEcccccc
cccEEEEEEcccEEEEEccEEEEEEEccccEEEEEEEcccEHEEcccccccccccccEEEEEEEEcccEEEEEEEEEccccEEEEEcccccEEEEEEEcccccEEEEEEEcccccccccccccEEEEEEcccccccccccccccccccccccccccccEEEcccHEEEccccccccEEEccccccccEEEEEEccccEEEEEEccccccccccccHcccccccccHHHHHHccccccccccccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEccccccccccccccEEEEEcccccccccEcccccEEEEEEccccEEEEccccccEEEEEEEEccccccEEEccEEEEEcccEEEcccEEEcccccccEEEEEcccccccccccccccccccccHHHcccHHHcccccHHHHHHccccccEEEEEccccccccccccEEEccccccccccEEEEEEEccccccccccEEEEEEEcccccccEEEEcccccccccccccccccccEEEEccEcccEEEEEEEEcHHHHEccccEEEEEEccccccccEEEEEEEEEccccccc
saagvqlheqnnHVVMNNGILQVSISTPQGFVIGIQYKgnknllnvqneednrgieatnYKVIMRTKEQVELSFTRmwqpytngtiapvniDKRFLMLRGSSGFYSYAIYKRLkgwpgfqlfnnrmvfkpnpdkFHYMIISGnrqremplqqdrerghkLAYEEAvllpngevddkyqysmdakdirvhgwistdstvgfwqilpssesrsfgplkqfltshtgpisintfhsthyvgenfgmkfkdgeaWKKIFGPFLVYVnsvagkgdrqmLWRDANRQFMNEvkswpykfpaskdfarsnkrgsisgrlIVKDRYVSRAGIAAKGAYvglakpgragswqteckGYQFWTvaneggnfsiknvlignynlyawipgfigdfKYHAAIRITAGSAKQIGNlvykaprngptlweigipdrsaaefyipnpnpkyinkLYVKHDRFRQYGLWERYAELHRKRDLVYEVWANNYRKDWYFAQntrkkgnkyegsTWQIQFKLEGVVKKATYKLRVAVAAAHGAELQVRVnsrsarrplfssgsvgrenaiARHGIHGVyklfnvdvpgkvlrkgnntiylsqprkldaFTGIMYDYlrfegpdpns
SAAGVQLHEQNNHVVMNNGILQVSISTPQGFVIGIQYKGNKNLLNVQNEEdnrgieatnykviMRTKEQVELSFTrmwqpytngtiapvnidKRFLMLRGSSGFYSYAIYKRLKGWPGFQLFNNRMVFKPNPDKFHYMIISGNRQREMPLQQDRERGHKLAYEeavllpngevddKYQYSMDAKDIRVHGWISTDSTVGFWQILPSSESRSFGPLKQFLTSHTGPISINTFHSTHYVGENFGMKFKDGEAWKKIFGPFLVYVNSVAGKGDRQMLWRDANRQFMNEVkswpykfpaskdfarsnkrgsisgrlivkdryvSRAGIAAKGAYVGLAKPGRAGSWQTECKGYQFWTVANEGGNFSIKNVLIGNYNLYAWIPGFIGDFKYHAAIRITAGSAKQIGNLVYKAPRNGPTLWEIGIPDRSAAEFYIPNPNPKYINKLYVKHDRFRQYGLWERYAELHRKRDLVYEVWANNYRKDWYFaqntrkkgnkyegstWQIQFKLEGVVKKATYKLRVAVAAahgaelqvrvnsrsarrplfssgsvgrenaIARHGIHGVYKLFNVDVPGKVLRKgnntiylsqprkldAFTGIMYDYLRFEGPDPNS
SAAGVQLHEQNNHVVMNNGILQVSISTPQGFVIGIQYKGNKNLLNVQNEEDNRGIEATNYKVIMRTKEQVELSFTRMWQPYTNGTIAPVNIDKRFLMLRGSSGFYSYAIYKRLKGWPGFQLFNNRMVFKPNPDKFHYMIISGNRQREMPLQQDRERGHKLAYEEAVLLPNGEVDDKYQYSMDAKDIRVHGWISTDSTVGFWQILPSSESRSFGPLKQFLTSHTGPISINTFHSTHYVGENFGMKFKDGEAWKKIFGPFLVYVNSVAGKGDRQMLWRDANRQFMNEVKSWPYKFPASKDFARSNKRGSISGRLIVKDRYVSRAGIAAKGAYVGLAKPGRAGSWQTECKGYQFWTVANEGGNFSIKNVLIGNYNLYAWIPGFIGDFKYHAAIRITAGSAKQIGNLVYKAPRNGPTLWEIGIPDRSAAEFYIPNPNPKYINKLYVKHDRFRQYGLWERYAELHRKRDLVYEVWANNYRKDWYFAQNTRKKGNKYEGSTWQIQFKLEGVVKKATYKLRVAVAAAHGAELQVRVNSRSARRPLFSSGSVGRENAIARHGIHGVYKLFNVDVPGKVLRKGNNTIYLSQPRKLDAFTGIMYDYLRFEGPDPNS
***********NHVVMNNGILQVSISTPQGFVIGIQYKGNKNLLNVQNEEDNRGIEATNYKVIMRTKEQVELSFTRMWQPYTNGTIAPVNIDKRFLMLRGSSGFYSYAIYKRLKGWPGFQLFNNRMVFKPNPDKFHYMIIS******************LAYEEAVLLPNGEVDDKYQYSMDAKDIRVHGWISTDSTVGFWQILPSS***SFGPLKQFLTSHTGPISINTFHSTHYVGENFGMKFKDGEAWKKIFGPFLVYVNSVAGKGDRQMLWRDANRQFMNEVKSWPYKFPASKDF******GSISGRLIVKDRYVSRAGIAAKGAYVGLAKPGRAGSWQTECKGYQFWTVANEGGNFSIKNVLIGNYNLYAWIPGFIGDFKYHAAIRITAGSAKQIGNLVYKAPRNGPTLWEIGIPDRSAAEFYIPNPNPKYINKLYVKHDRFRQYGLWERYAELHRKRDLVYEVWANNYRKDWYFAQNTRKKGNKYEGSTWQIQFKLEGVVKKATYKLRVAVAAAHGAELQVRV***************GRENAIARHGIHGVYKLFNVDVPGKVLRKGNNTIYLSQPRKLDAFTGIMYDYLRF*******
**AGVQLHEQNNHVVMNNGILQVSISTPQGFVIGIQYKGNKNLLNVQNEE*NRGIEATNYKVIMRTKEQVELSFTRMWQPYTNGTIAPVNIDKRFLMLRGSSGFYSYAIYKRLKGWPGFQLFNNRMVFKPNPDKFHYMIISGNRQREMPLQQDRERGHKLAYEEAVLLPNGEVDDKYQYSMDAKDIRVHGWISTDSTVGFWQILPSSESRSFGPLKQFLTSHTGPISINTFHSTHYVGENFGMKFKDGEAWKKIFGPFLVYVNSVAGKGDRQMLWRDANRQFMNEVKSWPYKFPASKDFARSNKRGSISGRLIVKDRYVSRAGIAAKGAYVGLAKPGRAGSWQTECKGYQFWTVANEGGNFSIKNVLIGNYNLYAWIPGFIGDFKYHAAIRITAGSAKQIGNLVYKAPRNGPTLWEIGIPDRSAAEFYIPNPNPKYINKLYVKHDRFRQYGLWERYAELHRKRDLVYEVWANNYRKDWYFAQNTRKKGNKYEGSTWQIQFKLEGVVKKATYKLRVAVAAAHGAELQVRVNSRSARRPL**********AIARHGIHGVYKLFNVDVPGKVLRKGNNTIYLSQPRKLDAFTGIMYDYL**EGP****
SAAGVQLHEQNNHVVMNNGILQVSISTPQGFVIGIQYKGNKNLLNVQNEEDNRGIEATNYKVIMRTKEQVELSFTRMWQPYTNGTIAPVNIDKRFLMLRGSSGFYSYAIYKRLKGWPGFQLFNNRMVFKPNPDKFHYMIISGNRQRE*********GHKLAYEEAVLLPNGEVDDKYQYSMDAKDIRVHGWISTDSTVGFWQILPSSESRSFGPLKQFLTSHTGPISINTFHSTHYVGENFGMKFKDGEAWKKIFGPFLVYVNSVAGKGDRQMLWRDANRQFMNEVKSWPYKFPASKDFARSNKRGSISGRLIVKDRYVSRAGIAAKGAYVGLAKPGRAGSWQTECKGYQFWTVANEGGNFSIKNVLIGNYNLYAWIPGFIGDFKYHAAIRITAGSAKQIGNLVYKAPRNGPTLWEIGIPDRSAAEFYIPNPNPKYINKLYVKHDRFRQYGLWERYAELHRKRDLVYEVWANNYRKDWYFAQNTRKKGNKYEGSTWQIQFKLEGVVKKATYKLRVAVAAAHGAELQVRVNSRSARRPLFSSGSVGRENAIARHGIHGVYKLFNVDVPGKVLRKGNNTIYLSQPRKLDAFTGIMYDYLRFEGPDPNS
**AGVQLHEQNNHVVMNNGILQVSISTPQGFVIGIQYKGNKNLLNVQNEEDNRGIEATNYKVIMRTKEQVELSFTRMWQPYTNGTIAPVNIDKRFLMLRGSSGFYSYAIYKRLKGWPGFQLFNNRMVFKPNPDKFHYMIISGNRQREMPLQQDRERGHKLAYEEAVLLPNGEVDDKYQYSMDAKDIRVHGWISTDSTVGFWQILPSSESRSFGPLKQFLTSHTGPISINTFHSTHYVGENFGMKFKDGEAWKKIFGPFLVYVNSVAGKGDRQMLWRDANRQFMNEVKSWPYKFPASKDFARSNKRGSISGRLIVKDRYVSRAGIAAKGAYVGLAKPGRAGSWQTECKGYQFWTVANEGGNFSIKNVLIGNYNLYAWIPGFIGDFKYHAAIRITAGSAKQIGNLVYKAPRNGPTLWEIGIPDRSAAEFYIPNPNPKYINKLYVKHDRFRQYGLWERYAELHRKRDLVYEVWANNYRKDWYFAQNTRKKGNKYEGSTWQIQFKLEGVVKKATYKLRVAVAAAHGAELQVRVNSRSARRPLFSSGSVGRENAIARHGIHGVYKLFNVDVPGKVLRKGNNTIYLSQPRKLDAFTGIMYDYLRFEGP****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SAAGVQLHEQNNHVVMNNGILQVSISTPQGFVIGIQYKGNKNLLNVQNEEDNRGIEATNYKVIMRTKEQVELSFTRMWQPYTNGTIAPVNIDKRFLMLRGSSGFYSYAIYKRLKGWPGFQLFNNRMVFKPNPDKFHYMIISGNRQREMPLQQDRERGHKLAYEEAVLLPNGEVDDKYQYSMDAKDIRVHGWISTDSTVGFWQILPSSESRSFGPLKQFLTSHTGPISINTFHSTHYVGENFGMKFKDGEAWKKIFGPFLVYVNSVAGKGDRQMLWRDANRQFMNEVKSWPYKFPASKDFARSNKRGSISGRLIVKDRYVSRAGIAAKGAYVGLAKPGRAGSWQTECKGYQFWTVANEGGNFSIKNVLIGNYNLYAWIPGFIGDFKYHAAIRITAGSAKQIGNLVYKAPRNGPTLWEIGIPDRSAAEFYIPNPNPKYINKLYVKHDRFRQYGLWERYAELHRKRDLVYEVWANNYRKDWYFAQNTRKKGNKYEGSTWQIQFKLEGVVKKATYKLRVAVAAAHGAELQVRVNSRSARRPLFSSGSVGRENAIARHGIHGVYKLFNVDVPGKVLRKGNNTIYLSQPRKLDAFTGIMYDYLRFEGPDPNS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query606 2.2.26 [Sep-21-2011]
Q8RJP2578 Rhamnogalacturonate lyase yes no 0.834 0.875 0.247 1e-27
B8N5T6663 Probable rhamnogalacturon N/A no 0.735 0.672 0.227 2e-11
A1D144658 Probable rhamnogalacturon N/A no 0.919 0.846 0.226 4e-11
Q5AZ85660 Rhamnogalacturonate lyase yes no 0.650 0.596 0.235 4e-11
A5ABH4706 Probable rhamnogalacturon yes no 0.462 0.396 0.240 4e-11
Q4WR79658 Probable rhamnogalacturon no no 0.919 0.846 0.228 2e-10
B0XPA2658 Probable rhamnogalacturon N/A no 0.919 0.846 0.228 2e-10
Q0C7K7660 Probable rhamnogalacturon N/A no 0.462 0.424 0.242 3e-09
Q2U5P7695 Probable rhamnogalacturon no no 0.706 0.615 0.213 3e-05
Q5B5P1 1041 Probable rhamnogalacturon no no 0.881 0.512 0.217 0.0001
>sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE PE=1 SV=1 Back     alignment and function desciption
 Score =  125 bits (314), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 151/609 (24%), Positives = 251/609 (41%), Gaps = 103/609 (16%)

Query: 1   SAAGVQLHEQNNHVVMNNGILQVSISTPQGFVIGIQYKGNKNLLN-----VQNEEDNRGI 55
           +   V+L     +  ++NG+L+V      G    + +KG  NL++      ++ + NR  
Sbjct: 25  ATGAVKLTLDGMNSTLDNGLLKVRFGA-DGSAKEV-WKGGTNLISRLSGAARDPDKNRSF 82

Query: 56  EATNY------------KVIMRTKEQVELSFTRMWQPYTNGTIAPVNIDKRFLMLRGSSG 103
               Y            +VI +T +QV L+       Y +     + ++   +M R  SG
Sbjct: 83  YLDYYSGGVNEFVPERLEVIKQTPDQVHLA-------YIDDQNGKLRLEYHLIMTRDVSG 135

Query: 104 FYSYAIYKRLKGWPGFQLFNNRMVFKPNPDKFHYMIISGNRQREMPLQQDRERGHKLAYE 163
            YSY +       P   +   R V++ +  +   +  S   +R  PL  D         +
Sbjct: 136 LYSYVVAANTGSAP-VTVSELRNVYRFDATRLDTLFNS--IRRGTPLLYDELEQLPKVQD 192

Query: 164 EAVLLPNGEVDDKYQYSMDAKDIRVHGWISTDSTVGFWQILPSSESRSFGPLKQFLTSHT 223
           E   LP+G V  KY ++   ++ R   W    +  G W +  S E  S   LKQ L  H 
Sbjct: 193 ETWRLPDGSVYSKYDFAGYQRESRY--WGVMGNGYGAWMVPASGEYYSGDALKQELLVHQ 250

Query: 224 GPISINTFHSTHYVGENFGMKFKDGEAWKKIFGPFLVYVNSVAGKGDRQMLWRDANRQFM 283
             I +N    +H+   +   +      ++K++GP+L+Y+N    +G+ + L  D +R+  
Sbjct: 251 DAIILNYLTGSHFGTPDMVAQ----PGFEKLYGPWLLYIN----QGNDRELVADVSRRAE 302

Query: 284 NEVKSWPYKFPASKDFARSNKRGSISGRLIVKDRYVSRAGIAAKGAYVGLAKPGRAGSWQ 343
           +E  SWPY++     + R  +R ++SGRL  +          A  A V L     A ++ 
Sbjct: 303 HERASWPYRWLDDARYPR--QRATVSGRLRTE----------APHATVVLNS--SAENFD 348

Query: 344 TECKGYQFWTVANEGGNFSIKNVLIGNYNLYAWIPGF--IGDFKYHAAIRITAGSAKQIG 401
            +  GY F    N  G FS+ NV  G Y L A+  G   IG       +R+  G   ++G
Sbjct: 349 IQTTGYLFSARTNRDGRFSLSNVPPGEYRLSAYADGGTQIG-LLAQQTVRV-EGKKTRLG 406

Query: 402 NLVYKAPRNGPTLWEIGIPDRSAAEFYIPNPNPKYINKLYVKHDRFRQYGLWERYAELHR 461
            +  + P   P  W IG  DR A EF                 D+ RQY  W    +   
Sbjct: 407 QIDARQP--APLAWAIGQADRRADEFRF--------------GDKPRQY-RW----QTEV 445

Query: 462 KRDLVYEVWANNYRKDWYFAQNTRKKGNKYEGSTWQIQFKLEGVVKKATYKLRVAVAA-- 519
             DL +E+  +  RKDWY+AQ         +  +W I F       +  Y L +A+AA  
Sbjct: 446 PADLTFEIGKSRERKDWYYAQT--------QPGSWHILFNTR--TPEQPYTLNIAIAAAS 495

Query: 520 -------AHGAELQVRVNSRSARRPLFSSGSVGRENAIARHGIH-GVYKLFNVDVPGKVL 571
                  A   +L V++N +     L ++     + +I R  +  G Y   ++ +P   L
Sbjct: 496 NNGMTTPASSPQLAVKLNGQ-----LLTTLKYDNDKSIYRGAMQSGRYHEAHIPLPAGAL 550

Query: 572 RKGNNTIYL 580
           ++G N I L
Sbjct: 551 QQGGNRITL 559
Degrades the rhamnogalacturonan I (RG-I) backbone of pectin. Is required for the full virulence of E.chrysanthemi strain 3937 as it is involved in rotting of plant tissue.
Dickeya dadantii (strain 3937) (taxid: 198628)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: -
>sp|B8N5T6|RGLB_ASPFN Probable rhamnogalacturonate lyase B OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|A1D144|RGLB_NEOFI Probable rhamnogalacturonate lyase B OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|Q5AZ85|RGLB_EMENI Rhamnogalacturonate lyase B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rglB PE=2 SV=2 Back     alignment and function description
>sp|A5ABH4|RGLB_ASPNC Probable rhamnogalacturonate lyase B OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|Q4WR79|RGLB_ASPFU Probable rhamnogalacturonate lyase B OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|B0XPA2|RGLB_ASPFC Probable rhamnogalacturonate lyase B OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|Q0C7K7|RGLB_ASPTN Probable rhamnogalacturonate lyase B OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|Q2U5P7|RGLC_ASPOR Probable rhamnogalacturonate lyase C OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=rglC PE=3 SV=1 Back     alignment and function description
>sp|Q5B5P1|RGLC_EMENI Probable rhamnogalacturonate lyase C OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rglC PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query606
255572842642 lyase, putative [Ricinus communis] gi|22 0.986 0.931 0.595 0.0
359492972643 PREDICTED: probable rhamnogalacturonate 1.0 0.942 0.585 0.0
356515685643 PREDICTED: probable rhamnogalacturonate 1.0 0.942 0.577 0.0
357466849651 Rhamnogalacturonate lyase [Medicago trun 1.0 0.930 0.572 0.0
356510088643 PREDICTED: rhamnogalacturonate lyase B-l 0.998 0.940 0.573 0.0
356515683636 PREDICTED: rhamnogalacturonate lyase-lik 0.993 0.946 0.574 0.0
302142095656 unnamed protein product [Vitis vinifera] 1.0 0.923 0.574 0.0
255572848 755 lyase, putative [Ricinus communis] gi|22 0.980 0.786 0.567 0.0
224063365683 predicted protein [Populus trichocarpa] 0.988 0.877 0.579 0.0
449437274625 PREDICTED: rhamnogalacturonate lyase-lik 0.968 0.939 0.566 0.0
>gi|255572842|ref|XP_002527353.1| lyase, putative [Ricinus communis] gi|223533272|gb|EEF35025.1| lyase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/630 (59%), Positives = 457/630 (72%), Gaps = 32/630 (5%)

Query: 4   GVQLHEQNNHVVMNNGILQVSISTPQGFVIGIQYKGNKNLLNVQNEEDNRG--------- 54
           GVQL+ Q+NHV+++NGILQV++S P+G V GIQY G  NLL V N+E NRG         
Sbjct: 5   GVQLNIQDNHVMLDNGILQVTLSNPEGIVTGIQYNGIGNLLEVLNDESNRGYWDLVWSTP 64

Query: 55  -----------IEATNYKVIMRTKEQVELSFTRMWQPYTNGTIAPVNIDKRFLMLRGSSG 103
                      I+ T++KVI+ T+EQVELSFTR W P   G + P+NIDKRF+MLRGSSG
Sbjct: 65  GSTGTTGIFDVIKGTSFKVIVETEEQVELSFTRSWDPSLEGKLIPLNIDKRFVMLRGSSG 124

Query: 104 FYSYAIYKRLKGWPGFQLFNNRMVFKPNPDKFHYMIISGNRQREMPLQQDR--ERGHKLA 161
           FYSYAI++ LK WPGF L   R+ FK   +KFHYM ++ NRQR MPL  DR   RG  LA
Sbjct: 125 FYSYAIFEHLKEWPGFNLAEARIAFKLRKEKFHYMAVADNRQRYMPLPDDRLSPRGQALA 184

Query: 162 YEEAVLLPN-------GEVDDKYQYSMDAKDIRVHGWISTDSTVGFWQILPSSESRSFGP 214
           Y EAVLL N       GE+DDKYQYS + KDIRVHGWI  D +VGFWQI PS+E RS GP
Sbjct: 185 YPEAVLLVNPVESEFKGELDDKYQYSCENKDIRVHGWICMDPSVGFWQITPSNEFRSGGP 244

Query: 215 LKQFLTSHTGPISINTFHSTHYVGENFGMKFKDGEAWKKIFGPFLVYVNSVAGKGDRQML 274
           +KQ LTSH GP +++ F S HY GE+   KF  GEAWKK+FGP  +Y+NSV    D   L
Sbjct: 245 VKQNLTSHVGPTTLSVFLSAHYSGEDLVPKFVAGEAWKKVFGPVFMYLNSVLVGDDPLSL 304

Query: 275 WRDANRQFMNEVKSWPYKFPASKDFARSNKRGSISGRLIVKDRYVSRAGIAAKGAYVGLA 334
           W DA  Q   EV+SWPY FPAS+D+ +S +RGS+SGRL+VKDR+VS   I+A GAYVGLA
Sbjct: 305 WEDAKEQTEIEVQSWPYFFPASEDYPKSEQRGSVSGRLLVKDRFVSDDYISANGAYVGLA 364

Query: 335 KPGRAGSWQTECKGYQFWTVANEGGNFSIKNVLIGNYNLYAWIPGFIGDFKYHAAIRITA 394
             G  GSWQ ECK YQFW+ A+E G FSI ++  G+YNLYAW+PGFIGD++   AI IT+
Sbjct: 365 PQGDVGSWQRECKDYQFWSKADENGYFSINSIRTGDYNLYAWVPGFIGDYRCDVAITITS 424

Query: 395 GSAKQIGNLVYKAPRNGPTLWEIGIPDRSAAEFYIPNPNPKYINKLYVKH-DRFRQYGLW 453
           G    + +LVY+ PR+GPTLWEIGIPDRSAAEFYIP+PNP YINKLYV H DRFRQYGLW
Sbjct: 425 GCDINMHDLVYEPPRDGPTLWEIGIPDRSAAEFYIPDPNPMYINKLYVNHPDRFRQYGLW 484

Query: 454 ERYAELHRKRDLVYEVWANNYRKDWYFAQNTRKK-GNKYEGSTWQIQFKLEGVVKKATYK 512
           +RYAEL+   DLVY V  ++YRKDW+FAQ  RKK  N Y+ +TWQI+FKL+ V K   YK
Sbjct: 485 DRYAELYPDGDLVYTVGVSDYRKDWFFAQVNRKKDDNTYQRTTWQIKFKLDNVDKNGIYK 544

Query: 513 LRVAVAAAHGAELQVRVNSRSARRPLFSSGSVGRENAIARHGIHGVYKLFNVDVPGKVLR 572
           LRVA+A+A  AELQVR+N   A   +FSSG +G++N+IARHGIHG+Y L+NVDVPG  L 
Sbjct: 545 LRVAIASATVAELQVRINDPKANI-IFSSGMIGKDNSIARHGIHGLYWLYNVDVPGVRLV 603

Query: 573 KGNNTIYLSQPRKLDAFTGIMYDYLRFEGP 602
           +G NT++L+QPR    F GIMYDY+R E P
Sbjct: 604 QGGNTVFLTQPRSSSPFQGIMYDYIRLEEP 633

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359492972|ref|XP_002285626.2| PREDICTED: probable rhamnogalacturonate lyase B-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356515685|ref|XP_003526529.1| PREDICTED: probable rhamnogalacturonate lyase B-like [Glycine max] Back     alignment and taxonomy information
>gi|357466849|ref|XP_003603709.1| Rhamnogalacturonate lyase [Medicago truncatula] gi|355492757|gb|AES73960.1| Rhamnogalacturonate lyase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356510088|ref|XP_003523772.1| PREDICTED: rhamnogalacturonate lyase B-like [Glycine max] Back     alignment and taxonomy information
>gi|356515683|ref|XP_003526528.1| PREDICTED: rhamnogalacturonate lyase-like [Glycine max] Back     alignment and taxonomy information
>gi|302142095|emb|CBI19298.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255572848|ref|XP_002527356.1| lyase, putative [Ricinus communis] gi|223533275|gb|EEF35028.1| lyase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224063365|ref|XP_002301113.1| predicted protein [Populus trichocarpa] gi|222842839|gb|EEE80386.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449437274|ref|XP_004136417.1| PREDICTED: rhamnogalacturonate lyase-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query606
TAIR|locus:2024331675 AT1G09910 [Arabidopsis thalian 0.915 0.822 0.553 5e-190
TAIR|locus:2024427617 AT1G09890 [Arabidopsis thalian 0.902 0.886 0.586 4.5e-189
TAIR|locus:2024417631 AT1G09880 [Arabidopsis thalian 0.904 0.868 0.578 4.2e-184
TAIR|locus:2136007646 AT4G24430 [Arabidopsis thalian 0.910 0.854 0.548 1.1e-183
TAIR|locus:2066040677 AT2G22620 [Arabidopsis thalian 0.902 0.807 0.539 9.7e-167
TAIR|locus:2121095667 AT4G38030 [Arabidopsis thalian 0.889 0.808 0.529 3.9e-163
TAIR|locus:2121090678 AT4G37950 [Arabidopsis thalian 0.889 0.794 0.510 1e-155
TAIR|locus:2200390248 AT1G65210 "AT1G65210" [Arabido 0.300 0.733 0.491 3.8e-56
ASPGD|ASPL0000007043660 rglB [Emericella nidulans (tax 0.533 0.489 0.258 7.8e-13
UNIPROTKB|Q5AZ85660 rglB "Rhamnogalacturonate lyas 0.533 0.489 0.258 7.8e-13
TAIR|locus:2024331 AT1G09910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1711 (607.4 bits), Expect = 5.0e-190, Sum P(2) = 5.0e-190
 Identities = 315/569 (55%), Positives = 409/569 (71%)

Query:    48 NEEDNRGI----EATNYKVIMRTKEQVELSFTRMWQPYTNGTIAPVNIDKRFLMLRGSSG 103
             NE   +GI        ++VI+ T+EQVE+SF R W P   G   P+NIDKRF+MLRGSSG
Sbjct:   105 NEPGGKGIFDVISGVTFRVIVETEEQVEISFLRTWDPSLEGKYIPLNIDKRFIMLRGSSG 164

Query:   104 FYSYAIYKRLKGWPGFQLFNNRMVFKPNPDKFHYMIISGNRQREMPLQQDRERGH--KLA 161
              YSY IY+ LK WPGF+L   R+ FK   DKFHYM ++ +R+R MP   D  +G    L 
Sbjct:   165 VYSYGIYEHLKDWPGFELGETRIAFKLRKDKFHYMAVADDRKRIMPFPDDLCKGRCQTLD 224

Query:   162 YEEAVLL-----P--NGEVDDKYQYSMDAKDIRVHGWISTDSTVGFWQILPSSESRSFGP 214
             Y+EA LL     P   GEVDDKYQYS + KD+RVHGWIS D  VGFWQI PS+E RS GP
Sbjct:   225 YQEASLLTAPCDPRLQGEVDDKYQYSCENKDLRVHGWISFDPPVGFWQITPSNEFRSGGP 284

Query:   215 LKQFLTSHTGPISINTFHSTHYVGENFGMKFKDGEAWKKIFGPFLVYVNSVAGKGDRQML 274
             LKQ LTSH GP ++  FHSTHY G+    +F+ GE WKK++GP  +Y+NS A   D   L
Sbjct:   285 LKQNLTSHVGPTTLAVFHSTHYAGKTMMPRFEHGEPWKKVYGPVFIYLNSTANGDDPLCL 344

Query:   275 WRDANRQFMNEVKSWPYKFPASKDFARSNKRGSISGRLIVKDRYVSRAGIAAKGAYVGLA 334
             W DA  + M EV+ WPY F AS D+ +S +RG+  GRL+++DR+++   I+A+GAYVGLA
Sbjct:   345 WDDAKIKMMAEVERWPYSFVASDDYPKSEERGTARGRLLIRDRFINNDLISARGAYVGLA 404

Query:   335 KPGRAGSWQTECKGYQFWTVANEGGNFSIKNVLIGNYNLYAWIPGFIGDFKYHAAIRITA 394
              PG +GSWQ ECKGYQFW +A+E G FSI NV  G YNLYAW+P FIGD+     +R+T+
Sbjct:   405 PPGDSGSWQIECKGYQFWAIADEAGYFSIGNVRPGEYNLYAWVPSFIGDYHNGTIVRVTS 464

Query:   395 GSAKQIGNLVYKAPRNGPTLWEIGIPDRSAAEFYIPNPNPKYINKLYVKH-DRFRQYGLW 453
             G   ++G++VY+ PR+GPTLWEIGIPDR A+EF+IP+P+P  +N++ V H DRFRQYGLW
Sbjct:   465 GCMIEMGDIVYEPPRDGPTLWEIGIPDRKASEFFIPDPDPTLVNRVLVHHQDRFRQYGLW 524

Query:   454 ERYAELHRKRDLVYEVWANNYRKDWYFAQNTRKKGNKYEGSTWQIQFKLEGVVKKATYKL 513
             ++Y +++   DLVY V  ++YR+DW+FA   RKKG+ +EG+TWQI F LE + +KA YKL
Sbjct:   525 KKYTDMYPNDDLVYTVGVSDYRRDWFFAHVPRKKGDVHEGTTWQIIFNLENIDQKANYKL 584

Query:   514 RVAVAAAHGAELQVRVNSRSARRPLFSSGSVGRENAIARHGIHGVYKLFNVDVPGKVLRK 573
             RVA+A+A  AELQ+R+N   A RPLF++G +GR+N+IARHGIHGVY L+ V++PG  L +
Sbjct:   585 RVAIASATLAELQIRINDAEAIRPLFTTGLIGRDNSIARHGIHGVYMLYAVNIPGNRLVQ 644

Query:   574 GNNTIYLSQPRKLDAFTGIMYDYLRFEGP 602
             G+NTI+L QPR    F GIMYDY+R EGP
Sbjct:   645 GDNTIFLKQPRCNGPFQGIMYDYIRLEGP 673
GO:0003824 "catalytic activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0016829 "lyase activity" evidence=ISS
GO:0030246 "carbohydrate binding" evidence=IEA
TAIR|locus:2024427 AT1G09890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024417 AT1G09880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136007 AT4G24430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066040 AT2G22620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121095 AT4G38030 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121090 AT4G37950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200390 AT1G65210 "AT1G65210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000007043 rglB [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AZ85 rglB "Rhamnogalacturonate lyase B" [Aspergillus nidulans FGSC A4 (taxid:227321)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query606
pfam06045220 pfam06045, Rhamnogal_lyase, Rhamnogalacturonate ly 4e-62
cd10320265 cd10320, RGL4_N, N-terminal catalytic domain of rh 2e-57
cd10317161 cd10317, RGL4_C, C-terminal domain of rhamnogalact 3e-44
cd1031692 cd10316, RGL4_M, Middle domain of rhamnogalacturon 3e-29
pfam1362081 pfam13620, CarboxypepD_reg, Carboxypeptidase regul 0.003
>gnl|CDD|218870 pfam06045, Rhamnogal_lyase, Rhamnogalacturonate lyase family Back     alignment and domain information 
 Score =  204 bits (521), Expect = 4e-62
 Identities = 92/189 (48%), Positives = 117/189 (61%), Gaps = 20/189 (10%)

Query: 1   SAAGVQLHEQNNHVVMNNGILQVSISTPQGFVIGIQYKGNKNLLNVQNEEDNRG------ 54
           +   V LH  + HVV++NGI+QV++S P G + GI+Y G  NLL  +++E NRG      
Sbjct: 23  NGGSVSLHVDDRHVVVDNGIVQVTLSNPGGAITGIRYNGIDNLLEARDKEKNRGYWDVVW 82

Query: 55  -----------IEATNYKVIMRTKEQVELSFTRMWQPYTNGTIAPVNIDKRFLMLRGSSG 103
                      I  T ++VI + +EQVELSF R W P +     P+NIDKR +MLRG SG
Sbjct: 83  NFPGVKSIFDVIVGTEFEVITQDEEQVELSFIRTWDP-SRDNGVPLNIDKRLIMLRGVSG 141

Query: 104 FYSYAIYKRLKGWPGFQLFNNRMVFKPNPDKFHYMIISGNRQREMPLQQDRE--RGHKLA 161
           FYSYAI++ L GWP   L   R+VFK N DKFHYM IS +RQR MP   DR+  RG  LA
Sbjct: 142 FYSYAIFEHLSGWPAVNLSETRLVFKLNKDKFHYMAISDDRQRIMPRPDDRDIPRGAPLA 201

Query: 162 YEEAVLLPN 170
           Y EAVLL +
Sbjct: 202 YPEAVLLVD 210

Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. Length = 220
>gnl|CDD|199907 cd10320, RGL4_N, N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase Back     alignment and domain information
>gnl|CDD|199905 cd10317, RGL4_C, C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase Back     alignment and domain information
>gnl|CDD|199904 cd10316, RGL4_M, Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase Back     alignment and domain information
>gnl|CDD|222268 pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 606
PF09284249 RhgB_N: Rhamnogalacturonase B, N-terminal; InterPr 100.0
PF06045203 Rhamnogal_lyase: Rhamnogalacturonate lyase family; 100.0
PF14683167 CBM-like: Polysaccharide lyase family 4, domain II 100.0
PF1468695 fn3_3: Polysaccharide lyase family 4, domain II; P 99.86
PF1362082 CarboxypepD_reg: Carboxypeptidase regulatory-like 98.81
PF1371588 DUF4480: Domain of unknown function (DUF4480) 98.46
cd03863375 M14_CPD_II The second carboxypeptidase (CP)-like d 97.97
cd03865402 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (C 97.93
cd03864392 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, als 97.9
cd06245363 M14_CPD_III The third carboxypeptidase (CP)-like d 97.72
cd03868372 M14_CPD_I The first carboxypeptidase (CP)-like dom 97.54
cd03858374 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like sub 97.52
cd03867395 M14_CPZ Peptidase M14-like domain of carboxypeptid 97.23
cd03866376 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM 96.43
PRK15036137 hydroxyisourate hydrolase; Provisional 95.41
PF08400134 phage_tail_N: Prophage tail fibre N-terminal; Inte 95.2
PF0830871 PEGA: PEGA domain; InterPro: IPR013229 This domain 94.84
PF03422125 CBM_6: Carbohydrate binding module (family 6); Int 94.23
cd03869405 M14_CPX_like Peptidase M14-like domain of carboxyp 92.88
cd00421146 intradiol_dioxygenase Intradiol dioxygenases catal 92.64
PF0573870 Cna_B: Cna protein B-type domain; InterPro: IPR008 92.62
PF09430123 DUF2012: Protein of unknown function (DUF2012); In 92.6
PF0721085 DUF1416: Protein of unknown function (DUF1416); In 92.32
KOG1948 1165 consensus Metalloproteinase-related collagenase pM 91.27
cd03463185 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4 89.64
PF0749566 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi 89.42
cd03459158 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) 89.15
cd03462247 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) 87.48
PF00775183 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 Th 87.42
TIGR02465246 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Memb 87.19
PF03170 605 BcsB: Bacterial cellulose synthase subunit; InterP 86.69
TIGR02423193 protocat_alph protocatechuate 3,4-dioxygenase, alp 86.19
TIGR02422220 protocat_beta protocatechuate 3,4-dioxygenase, bet 85.78
cd03464220 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4- 85.69
KOG1948 1165 consensus Metalloproteinase-related collagenase pM 85.33
COG3485226 PcaH Protocatechuate 3,4-dioxygenase beta subunit 84.85
TIGR02962112 hdxy_isourate hydroxyisourate hydrolase. Members o 84.43
PRK103401021 ebgA cryptic beta-D-galactosidase subunit alpha; R 83.35
PF02837167 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sug 83.02
PF02929276 Bgal_small_N: Beta galactosidase small chain; Inte 82.74
PF10670215 DUF4198: Domain of unknown function (DUF4198) 82.3
TIGR02438281 catachol_actin catechol 1,2-dioxygenase, Actinobac 81.19
cd05822112 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) ca 80.62
cd03460282 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyz 80.6
cd03458256 Catechol_intradiol_dioxygenases Catechol intradiol 80.58
>PF09284 RhgB_N: Rhamnogalacturonase B, N-terminal; InterPro: IPR015364 This domain is found in prokaryotic enzyme rhamnogalacturonase B, it adopts a structure consisting of a beta supersandwich, with eighteen strands in two beta-sheets Back     alignment and domain information 
Probab=100.00  E-value=1.8e-53  Score=420.65  Aligned_cols=233  Identities=19%  Similarity=0.305  Sum_probs=162.7

Q ss_pred             EEEeCCEEEEeCC-eEEEEEeCCceeEEEEEEcCEEeccccCCCccCcCccceEEEEEEccCcEEEEEEEEeecCCCCCC
Q 038979            7 LHEQNNHVVMNNG-ILQVSISTPQGFVIGIQYKGNKNLLNVQNEEDNRGIEATNYKVIMRTKEQVELSFTRMWQPYTNGT   85 (606)
Q Consensus         7 ~~~~g~~vv~~Ng-~l~vtv~k~~g~itsl~y~G~e~l~~~~~~~~~~Gl~~~~~~v~~~~~~~i~vs~~~~~~~~~~g~   85 (606)
                      ++++|+.+|+|.| .|+|+|+|++|||+||+|+|+|+|.+.+++|+++||+.+++++.+.++ +|+|+|+.       ++
T Consensus         3 ~t~sg~~~viDtga~Lvf~V~~s~gDitSi~y~g~ElQ~~~k~ShI~SGLGsatVs~~~~~~-~IkVt~~~-------~t   74 (249)
T PF09284_consen    3 YTDSGSNYVIDTGAGLVFKVSKSNGDITSIKYNGTELQYSSKNSHINSGLGSATVSITTSGD-YIKVTCKT-------GT   74 (249)
T ss_dssp             EEE-SSEEEEE---TEEEEEETTT--EEEEEETTEE-B-SSS-BEETT--SS-EEEEEEETT-EEEEEEE--------SS
T ss_pred             eEecCCcEEEECCCCEEEEEecCCCCeEEEEECCEeeecCCccceeccCCCccEEEEEeeCC-EEEEEEEc-------CC
Confidence            5788877777777 499999999999999999999999999999999999999999998775 99999998       43


Q ss_pred             ccceeeeEEEEEEcCCceEEEEEEeecccCCCCCcccccEEEEeCCCCCCccee-eccccccccCCcccccccceeeeec
Q 038979           86 IAPVNIDKRFLMLRGSSGFYSYAIYKRLKGWPGFQLFNNRMVFKPNPDKFHYMI-ISGNRQREMPLQQDRERGHKLAYEE  164 (606)
Q Consensus        86 ~~~~~l~~~~v~r~g~sgiY~y~i~~~~~~~p~~~lge~R~v~Rl~~~~f~~~~-~~d~r~~~~P~~~d~~~g~~l~~~e  164 (606)
                           |+||||+|+|++.|||++ +  .+  .+++|||||||+||++++||+-. ..+        .++ ..|..++|.+
T Consensus        75 -----Lthyyv~r~g~~~IYmaT-~--~~--~e~~igelRfIaRL~~~~lpn~~~~~~--------~~~-~~g~taIEgs  135 (249)
T PF09284_consen   75 -----LTHYYVARPGENNIYMAT-Y--IT--AEPSIGELRFIARLNRSILPNEYPYGD--------VST-TDGGTAIEGS  135 (249)
T ss_dssp             -----EEEEEEEETT--EEEEEE-E--ES--S--TTS-EEEEEEE-TTTS-EEETTGG--------GG---TT-EEEETT
T ss_pred             -----eEEEEEEecCCceEEEEe-c--cC--CCCCccceEEEEEcccccCCCCCCccc--------ccc-cCCceEEeec
Confidence                 899999999999999999 4  24  58899999999999999999932 111        122 4678889999


Q ss_pred             eEEcC-CCEeecceecccccccceeEEEEeCCCceEEEEEcCCCCcccCCCceecccccCCCc---eEEEEeeeccccCc
Q 038979          165 AVLLP-NGEVDDKYQYSMDAKDIRVHGWISTDSTVGFWQILPSSESRSFGPLKQFLTSHTGPI---SINTFHSTHYVGEN  240 (606)
Q Consensus       165 ~v~l~-~G~~~sKY~~s~~~~d~~vhG~~s~g~~vG~W~I~~s~E~~sGGP~kqdL~~h~g~~---~ln~~~s~H~~g~~  240 (606)
                      ||++. ||+++||||++.+++|+++|||+  |+++|+|||++++|.+|||||+|||++|.++.   +++||+|+|.+   
T Consensus       136 DVf~~~~G~TrSKfYSs~r~IDd~~hgv~--g~~vgv~mi~~~~E~SSGGPFfRDI~~~~~~~~~~Ly~ymnSgH~q---  210 (249)
T PF09284_consen  136 DVFLVSDGQTRSKFYSSQRFIDDDVHGVS--GSAVGVYMIMSNYEKSSGGPFFRDINTNNGGDGNELYNYMNSGHTQ---  210 (249)
T ss_dssp             TEEEE-TTEEEEGGGG--BGGG-SEEEEE---SS-EEEEE----TT-SS-TT-B---EEE-SS-EEEEEEEE-STT----
T ss_pred             cEEEecCceEeeeeccccceeccceEEEe--cCCeEEEEEeCCccccCCCCchhhhhhccCCccceeeeeEecCccc---
Confidence            99977 99999999999999999999998  88999999999999999999999999998765   89999999987   


Q ss_pred             ccccccCCcccc-eeeceEEEEEcCCCCC--CCchhhHHHH
Q 038979          241 FGMKFKDGEAWK-KIFGPFLVYVNSVAGK--GDRQMLWRDA  278 (606)
Q Consensus       241 ~~~~~~~ge~w~-k~~GP~~~y~N~g~~~--~~~~~l~~Da  278 (606)
                             +|+|| +|||||+|+|++|.++  .++|..|+|.
T Consensus       211 -------TE~~R~GLhGPYaL~FT~g~~Ps~~~~D~sff~~  244 (249)
T PF09284_consen  211 -------TEPYRMGLHGPYALAFTDGGAPSASDLDTSFFDD  244 (249)
T ss_dssp             --------S----EEEEEEEEEEESS----S-----GGGGG
T ss_pred             -------CchhccccCCceEEEEcCCCCCCCccccccchhh
Confidence                   89999 9999999999997764  3589999987

The exact function of the domain is unknown, but a putative role includes carbohydrate-binding []. ; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
>PF06045 Rhamnogal_lyase: Rhamnogalacturonate lyase family; InterPro: IPR010325 Rhamnogalacturonate lyase degrades the rhamnogalacturonan I (RG-I) backbone of pectin [] Back     alignment and domain information
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A Back     alignment and domain information
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A Back     alignment and domain information
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A Back     alignment and domain information
>PF13715 DUF4480: Domain of unknown function (DUF4480) Back     alignment and domain information
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3 Back     alignment and domain information
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3 Back     alignment and domain information
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>PRK15036 hydroxyisourate hydrolase; Provisional Back     alignment and domain information
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein Back     alignment and domain information
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins Back     alignment and domain information
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity Back     alignment and domain information
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates Back     alignment and domain information
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains Back     alignment and domain information
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators Back     alignment and domain information
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length Back     alignment and domain information
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit Back     alignment and domain information
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators Back     alignment and domain information
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate Back     alignment and domain information
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups Back     alignment and domain information
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases Back     alignment and domain information
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase Back     alignment and domain information
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity [] Back     alignment and domain information
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit Back     alignment and domain information
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit Back     alignment and domain information
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit Back     alignment and domain information
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase Back     alignment and domain information
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed Back     alignment and domain information
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF02929 Bgal_small_N: Beta galactosidase small chain; InterPro: IPR004199 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF10670 DUF4198: Domain of unknown function (DUF4198) Back     alignment and domain information
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial Back     alignment and domain information
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU) Back     alignment and domain information
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate Back     alignment and domain information
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query606
1nkg_A508 Rhamnogalacturonase B; polysaccharide lyase, carbo 1e-106
>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin, LY; 1.50A {Aspergillus aculeatus} SCOP: b.3.1.2 b.18.1.25 b.30.5.10 PDB: 2xhn_A* 3njv_A* 3njx_A Length = 508 Back     alignment and structure
 Score =  328 bits (842), Expect = e-106
 Identities = 81/601 (13%), Positives = 175/601 (29%), Gaps = 112/601 (18%)

Query: 9   EQNNHVVMNNGI---LQVSISTPQGFVIGIQYKGNKNLLNVQNEEDNRGIEATNYKVIMR 65
             ++  V++      L+ ++S     +  I + G +   + Q      G+  +      +
Sbjct: 6   TSSSAYVIDTNAPNQLKFTVSRSSCDITSIIHYGTELQYSSQGSHIGSGL-GSATVTATQ 64

Query: 66  TKEQVELSFTRMWQPYTNGTIAPVNIDKRFLMLRGSSGFYSYAIYKRLKGWPGFQLFNNR 125
           + + ++++                 + +  ++  G    +   +   +   P       R
Sbjct: 65  SGDYIKVTCVTD------------TLTQYMVVHNGDPIIH---MATYITAEPSIGEL--R 107

Query: 126 MVFKPNPDKFHYMIISGNRQREMPLQQDRERGHKLAYEEAVLLPNGEVDDKYQYSMDAKD 185
            + + N D         N +    +               V L   E   K+  S    D
Sbjct: 108 FIARLNSDLLP------NEEPFGDVSTTA--DGTAIEGSDVFLVGSETRSKFYSSERFID 159

Query: 186 IRVHGWISTDSTVGFWQILPSSESRSFGPLKQFLTSHTGPISINTFHSTHYVGENFGMKF 245
            + H             IL   ES S GP  + + S+ G      +   +          
Sbjct: 160 DQRHCIAG--DAHRVCMILNQYESSSGGPFHRDINSNNGGSYNALYWYMNSGH------V 211

Query: 246 KDGEAWKKIFGPFLVYVNSVAGKGDRQMLWRDANRQFMNEVKSWPYKFPASK---DFARS 302
           +       + GP+ +Y +                        S    F A      +  +
Sbjct: 212 QTESYRMGLHGPYSMYFSRSG-----------------TPSTSIDTSFFADLDIKGYVAA 254

Query: 303 NKRGSISGRLIVKDRYVSRAGIAAKGAYVGLAKPGRAGSWQTECKGYQFWTVANEGGNFS 362
           + RG ++G                       A               Q+WT  +  G+F+
Sbjct: 255 SGRGKVAGT-------------------ASGADSSMDWVVHWYNDAAQYWTYTSSSGSFT 295

Query: 363 IKNVLIGNYNLYAWIPGFIGDFKYHAAIRITAGSAKQIGNLVYKAPRNGPTLWEIGIPDR 422
              +  G Y +  +   +       +++ ++AGS       +  + + G T+++IG  D 
Sbjct: 296 SPAMKPGTYTMVYYQGEYA---VATSSVTVSAGSTTTKN--ISGSVKTGTTIFKIGEWDG 350

Query: 423 SAAEFYIPNPNPKYINKLYVKHDRFRQYGLWERYAELHRKRDLVYEVWANNYRKDWYFAQ 482
               F                  + R +    R +       L Y V ++    D+  A 
Sbjct: 351 QPTGFRNAAN-------------QLRMHPSDSRMSSWG---PLTYTVGSSALT-DFPMAV 393

Query: 483 NTRKKGNKYEGSTWQIQFKLEGVVKKATYKLRVAVAAAH-GAELQVRVNSRSARRPLFSS 541
                      +   I+F      +     LR+    +  G   Q  +NS +   P   +
Sbjct: 394 FKSV------NNPVTIKFTATS-AQTGAATLRIGTTLSFAGGRPQATINSYTGSAPAAPT 446

Query: 542 GSVGRENAIARHGIHGVYKLFNVDVPGKVLRKGNNTIYLSQPRKLDAFT----GIMYDYL 597
                   + R    G+ ++++V +P   +  G NTI ++        T      ++D +
Sbjct: 447 N--LDSRGVTRGAYRGLGEVYDVSIPSGTIVAGTNTITINVISGSSGDTYLSPNFIFDCV 504

Query: 598 R 598
            
Sbjct: 505 E 505

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query606
1nkg_A508 Rhamnogalacturonase B; polysaccharide lyase, carbo 100.0
2nsm_A439 Carboxypeptidase N catalytic chain; caroxypeptidas 97.94
1h8l_A380 Carboxypeptidase GP180 residues 503-882; hydrolase 97.79
3mn8_A435 LP15968P; catalytic domain of alpha/beta-hydrolase 97.73
1uwy_A426 Carboxypeptidase M; metallopeptidase, GPI-anchor, 97.67
4aw7_A591 GH86A beta-porphyranase; hydrolase, porphyran-hexa 96.37
1xpn_A170 Hypothetical protein PA1324; B-barrel, structural 96.28
3qec_A150 Putative carbohydrate binding protein; suramin bin 96.14
2w87_A139 Esterase D, XYL-CBM35; plant cell WALL degradation 95.89
2wz8_A156 Cellulosome protein dockerin type I; sugar binding 95.85
2w3j_A145 Carbohydrate binding module; sugar-binding protein 95.59
2w47_A144 Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1. 95.3
2vzp_A127 Aocbm35, EXO-beta-D-glucosaminidase; family 35, CS 94.45
2bgo_A140 Endo-B1,4-mannanase 5C; carbohydrate binding prote 94.35
3kcp_A321 Cellulosomal-scaffolding protein A; dockerin, X-mo 92.65
2xsu_A312 Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE 89.12
1uxz_A131 Cellulase B; carbohydrate binding module, CBM6, mi 88.36
2cdp_A160 Beta-agarase 1; carbohydrate-binding module, hydro 87.93
2boy_A254 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxi 87.51
2azq_A311 Catechol 1,2-dioxygenase; CTD, lipid, isozyme, int 87.37
3th1_A260 Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxy 85.18
2bum_B241 Protocatechuate 3,4-dioxygenase beta chain; oxidor 85.07
1tmx_A293 Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidor 84.37
2bum_A209 Protocatechuate 3,4-dioxygenase alpha chain; oxido 84.0
2y8k_A491 Arabinoxylanase, carbohydrate binding family 6; hy 83.71
3t63_M238 3,4-PCD, protocatechuate 3,4-dioxygenase beta chai 82.93
3oba_A1032 Beta-galactosidase; TIM barrel, tetramer, GH2, gly 81.62
3n9t_A290 PNPC; phospholipid binds, N-terminal helix tunnel, 81.21
1ti6_B274 Pyrogallol hydroxytransferase small subunit; molyb 81.2
2h4e_A127 Transthyretin; amyloid, sulfite, familial amyloido 80.75
1dmh_A311 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydroc 80.4
>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin, LY; 1.50A {Aspergillus aculeatus} SCOP: b.3.1.2 b.18.1.25 b.30.5.10 PDB: 2xhn_A* 3njv_A* 3njx_A Back     alignment and structure
Probab=100.00  E-value=9.1e-129  Score=1064.09  Aligned_cols=492  Identities=17%  Similarity=0.267  Sum_probs=440.0

Q ss_pred             eEEEEeCCEEEE---eCCeEEEEEeCCceeEEEEEEcCEEeccccCCCccCcCccceEEEEEEccCcEEEEEEEEeecCC
Q 038979            5 VQLHEQNNHVVM---NNGILQVSISTPQGFVIGIQYKGNKNLLNVQNEEDNRGIEATNYKVIMRTKEQVELSFTRMWQPY   81 (606)
Q Consensus         5 v~~~~~g~~vv~---~Ng~l~vtv~k~~g~itsl~y~G~e~l~~~~~~~~~~Gl~~~~~~v~~~~~~~i~vs~~~~~~~~   81 (606)
                      ..+++++++|||   +||+|+|+|+|++|+|+||+|+|+|+|++.+++++++|+++++|++++. +++|+|+|++     
T Consensus         2 ~g~t~~~~~~vvd~g~n~~l~~tv~k~~G~itsi~y~G~e~~~~~~~s~~gsg~G~~~~~~~~~-~~~i~vs~~~-----   75 (508)
T 1nkg_A            2 FGITTSSSAYVIDTNAPNQLKFTVSRSSCDITSIIHYGTELQYSSQGSHIGSGLGSATVTATQS-GDYIKVTCVT-----   75 (508)
T ss_dssp             CEEEECSSEEEEECCCTTCEEEEEETTTCCEEEEEETTEECBCSSSCBEETTCCSSCEEEEEEE-TTEEEEEEEC-----
T ss_pred             ccEEecCCEEEEECCCCCEEEEEEeCCCceEEEEEECCEEccccCCCcccccCCCcceEEEEec-CCEEEEEEEe-----
Confidence            357999999999   4559999999999999999999999999888889999999999999886 5899999998     


Q ss_pred             CCCCccceeeeEEEEEEcCCceEEEEEEeecccCCCCCcccccEEEEeCCCCCCcceeeccccccccCCcccccccceee
Q 038979           82 TNGTIAPVNIDKRFLMLRGSSGFYSYAIYKRLKGWPGFQLFNNRMVFKPNPDKFHYMIISGNRQREMPLQQDRERGHKLA  161 (606)
Q Consensus        82 ~~g~~~~~~l~~~~v~r~g~sgiY~y~i~~~~~~~p~~~lge~R~v~Rl~~~~f~~~~~~d~r~~~~P~~~d~~~g~~l~  161 (606)
                        +     +||||||||+|++|||||++++     .+++|+|+|+||||++++|++      ++|.||+|+++ .|++ +
T Consensus        76 --~-----~l~~~~v~~~g~sg~Y~y~~~~-----~~~~lge~R~v~Rl~~~~f~~------~~r~~~~p~~~-~~~~-v  135 (508)
T 1nkg_A           76 --D-----TLTQYMVVHNGDPIIHMATYIT-----AEPSIGELRFIARLNSDLLPN------EEPFGDVSTTA-DGTA-I  135 (508)
T ss_dssp             --S-----SEEEEEEEETTCCEEEEEEEES-----SCCTTSCEEEEEEECTTTCCE------EETTGGGGCCT-TCEE-E
T ss_pred             --C-----CceEEEEEeCCCceEEEEEeec-----cCCCCCceEEEEEcChhhCCC------ccccCCCCccc-cCcE-e
Confidence              3     5999999999999999999885     378999999999999999976      25899999874 4655 8


Q ss_pred             eeceEEcCCCEeecceecccccccceeEEEEeCCCceEEEEEcCCCCcccCCCceecccccCCC---ceEEEEeeecccc
Q 038979          162 YEEAVLLPNGEVDDKYQYSMDAKDIRVHGWISTDSTVGFWQILPSSESRSFGPLKQFLTSHTGP---ISINTFHSTHYVG  238 (606)
Q Consensus       162 ~~e~v~l~~G~~~sKY~~s~~~~d~~vhG~~s~g~~vG~W~I~~s~E~~sGGP~kqdL~~h~g~---~~ln~~~s~H~~g  238 (606)
                      ++|+++..+|+++||||||+++||++||||+  +++||||||+|++||++||||||||++|+++   ++||||+|+|++ 
T Consensus       136 ~~~d~~~l~G~~~~KY~~s~~~~D~~vhG~~--~~~vG~w~I~~s~E~~sGGP~kqdL~~h~~~~~~~~~~y~~s~H~~-  212 (508)
T 1nkg_A          136 EGSDVFLVGSETRSKFYSSERFIDDQRHCIA--GDAHRVCMILNQYESSSGGPFHRDINSNNGGSYNALYWYMNSGHVQ-  212 (508)
T ss_dssp             ETTTEEEETTEEEEGGGGCCBGGGCSEEEEE--CSSCEEEEECCCCTTCSSCTTCBCCCEEECSSCEEEEEEEECSTTC-
T ss_pred             eeccceeeCCEEccceeccccceecceEEEE--CCCeEEEEEcCCcccccCCCcchhhhccCCcccceeeeeEeecccc-
Confidence            8998876699999999999999999999999  5999999999999999999999999999999   899999999987 


Q ss_pred             CcccccccCCcccc-eeeceEEEEEcCCCCCCCchhhHHHHHHHhhhhcccCCCCCCCC---CCCCCCCCCeEEEEEEEE
Q 038979          239 ENFGMKFKDGEAWK-KIFGPFLVYVNSVAGKGDRQMLWRDANRQFMNEVKSWPYKFPAS---KDFARSNKRGSISGRLIV  314 (606)
Q Consensus       239 ~~~~~~~~~ge~w~-k~~GP~~~y~N~g~~~~~~~~l~~Da~~~~~~E~~~WPy~f~~~---~~y~~~~qRGtVsG~v~~  314 (606)
                               +|.++ |||||||||||+|++++                 ++|||+|+++   ++|||+++||+|+|+|. 
T Consensus       213 ---------t~~~~~g~~GP~~~y~n~g~~~~-----------------~~wpysf~~s~~~~~y~~~~~RGtVsG~V~-  265 (508)
T 1nkg_A          213 ---------TESYRMGLHGPYSMYFSRSGTPS-----------------TSIDTSFFADLDIKGYVAASGRGKVAGTAS-  265 (508)
T ss_dssp             ---------CSCCCCEEEEEEEEEEESSCCCC-----------------SCCCCGGGGGTTCTTCCCGGGCBEEEEEEE-
T ss_pred             ---------cccccccccccEEEEECCCCCCC-----------------CCCCCccccccCccCCcCcccccEEEEEEc-
Confidence                     45555 99999999999998753                 6999999988   99999999999999984 


Q ss_pred             eeccccccCcccCceEEEecCCCCCCCcccccccceeEEEeCCCcceEeCcccCceeEEEEEECceeceeeeeeEEEEeC
Q 038979          315 KDRYVSRAGIAAKGAYVGLAKPGRAGSWQTECKGYQFWTVANEGGNFSIKNVLIGNYNLYAWIPGFIGDFKYHAAIRITA  394 (606)
Q Consensus       315 sd~~~~~~~~pa~~a~V~La~~~~~g~~q~~~~~yqywt~td~~G~F~I~nV~pGtY~L~a~~~G~~G~~~~~~~VtV~a  394 (606)
                       +       .|+....|++        |.  +++|||||+||++|+|+|++||||+|+|+||++|+   ...+.+|+|++
T Consensus       266 -G-------~~~~~~avv~--------~~--~k~~qywt~td~~G~FtI~~V~pGtY~L~a~~~G~---~~~~~~VtV~a  324 (508)
T 1nkg_A          266 -G-------ADSSMDWVVH--------WY--NDAAQYWTYTSSSGSFTSPAMKPGTYTMVYYQGEY---AVATSSVTVSA  324 (508)
T ss_dssp             -S-------SCTTSCEEEE--------EE--CSSCEEEEECCTTCEEECCCBCSEEEEEEEEETTE---EEEEEEEEECT
T ss_pred             -C-------ccCCceEEEE--------Ec--CCCceeEEEECCCCcEEeCCcCCceEEEEEEECce---EEEEeEEEEcC
Confidence             4       4444443443        32  89999999999999999999999999999999887   36677899999


Q ss_pred             CceeeecceEEecCCCCCceeEEeccCCCccceecCCCCCcccccccccccccccchhHhhhhhhcCCCCeeEEEeccCC
Q 038979          395 GSAKQIGNLVYKAPRNGPTLWEIGIPDRSAAEFYIPNPNPKYINKLYVKHDRFRQYGLWERYAELHRKRDLVYEVWANNY  474 (606)
Q Consensus       395 G~t~~l~~l~~~~p~~~~~LweIG~~Drta~eF~~~d~~~~~~~~~~~~~d~~r~yglW~r~~~~~P~~dl~ytVG~S~~  474 (606)
                      |++++++ |+|+++ ++++|||||+|||+|.||+++|      +.++|||+++|+| +|         +||+||||+|++
T Consensus       325 G~t~~l~-i~~~~~-~g~~iW~IG~pDrta~eF~~~d------~~~~~hp~~~r~~-~W---------~~l~ytVG~S~~  386 (508)
T 1nkg_A          325 GSTTTKN-ISGSVK-TGTTIFKIGEWDGQPTGFRNAA------NQLRMHPSDSRMS-SW---------GPLTYTVGSSAL  386 (508)
T ss_dssp             TCEEECC-EECCCC-CCSEEEEEECSSSSCTTSBTHH------HHTTSCTTCTTSC-CC---------CSCEEETTTSCG
T ss_pred             CCeeEee-eEEecC-CCCeeEEeeCCCCCchhhcCCC------cccccCcchhccc-cc---------CCeEEEeCcCch
Confidence            9999997 999976 8999999999999999999998      3467899779998 77         479999999999


Q ss_pred             CCceeeEEeeeecCCcccceeEEEEEEecCccccccEEEEEEEeec-cCCeEEEEEcCccCCCCCccccccCCCCeeeee
Q 038979          475 RKDWYFAQNTRKKGNKYEGSTWQIQFKLEGVVKKATYKLRVAVAAA-HGAELQVRVNSRSARRPLFSSGSVGRENAIARH  553 (606)
Q Consensus       475 ~~Dw~ya~~~~~~~~~~~~~~w~I~F~L~~~~~~~~~tLriala~a-~~~~~~V~vNg~~~~~p~~~t~~~~~~~~i~R~  553 (606)
                       +||||||| +..     .++|+|+|+|+++| .+++||||+||+| +++++||+|||+..+.|  .++.+++||||+||
T Consensus       387 -~Dw~ya~~-~~~-----~~~w~I~F~l~~~~-~~~~tLri~la~a~a~~~~qV~VN~~~~~~~--~~~~~~~~~~i~R~  456 (508)
T 1nkg_A          387 -TDFPMAVF-KSV-----NNPVTIKFTATSAQ-TGAATLRIGTTLSFAGGRPQATINSYTGSAP--AAPTNLDSRGVTRG  456 (508)
T ss_dssp             -GGSBSEEE-TTT-----TCCEEEEEEECGGG-CSCEEEEEEEEEEETTCEEEEEETTEECCCC--CCCCCCCSCCGGGT
T ss_pred             -hcCCeEEE-CCC-----CCcEEEEEEcCccc-CCceEEEEEehhhccCCCeEEEECCcCCcCc--cccccCCCCeEEec
Confidence             79999999 332     27899999999988 4799999999998 68999999999877655  45568999999999


Q ss_pred             EEEeecEEEEEEeecCceeeeecEEEEEeecCCC--CC--ceEEEEEEEEec
Q 038979          554 GIHGVYKLFNVDVPGKVLRKGNNTIYLSQPRKLD--AF--TGIMYDYLRFEG  601 (606)
Q Consensus       554 ~~~G~~~~~~~~ipa~~L~~G~NtI~l~~~~g~~--~~--~~vmyD~IrLe~  601 (606)
                      ++||+|++++|+||+++|++|+|+|+|+++++++  +|  ++|||||||||.
T Consensus       457 ~~~G~~~~~~~~ipa~~L~~G~NtI~lt~~~~s~~~~fls~~vmyD~I~L~~  508 (508)
T 1nkg_A          457 AYRGLGEVYDVSIPSGTIVAGTNTITINVISGSSGDTYLSPNFIFDCVELFQ  508 (508)
T ss_dssp             CCCSCCCEEEEEECTTSSCSEEEEEEEEEECSCCCSGGGSSEEEEEEEEEEC
T ss_pred             ceeeeeEEEEEEEcHHHeecCceEEEEEeccCCCCCccccccEEEEEEEecC
Confidence            9999999999999999999999999999999985  57  699999999984
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, processing, peptide modification, hydrolase; HET: NAG; 2.10A {Homo sapiens} Back     alignment and structure
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A* Back     alignment and structure
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold, C-terminal, A transthyretin-like domain, hydrolase; HET: NAG GEM; 2.70A {Drosophila melanogaster} Back     alignment and structure
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease, zinc, lipoprotein, hydrolase, structural proteomics in europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP: b.3.2.1 c.56.5.1 Back     alignment and structure
>4aw7_A GH86A beta-porphyranase; hydrolase, porphyran-hexa-oligosaccharide, complex; HET: GLA GAL L6S AAL; 1.33A {Bacteroides plebeius} Back     alignment and structure
>1xpn_A Hypothetical protein PA1324; B-barrel, structural genomics, northeast structural genomics consortium, NESG, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.3.7.1 Back     alignment and structure
>3qec_A Putative carbohydrate binding protein; suramin binding, heparin binding, possible carbohydrate TRAN biofilm formation; HET: PGE; 2.61A {Pseudomonas aeruginosa} Back     alignment and structure
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A Back     alignment and structure
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum} Back     alignment and structure
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium} Back     alignment and structure
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A Back     alignment and structure
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A* Back     alignment and structure
>3kcp_A Cellulosomal-scaffolding protein A; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} PDB: 3p0d_C 4fl4_C 2b59_B Back     alignment and structure
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A* Back     alignment and structure
>1uxz_A Cellulase B; carbohydrate binding module, CBM6, mixted BETA1, 3-1, 4 linked glucan; 1.4A {Cellvibrio mixtus} SCOP: b.18.1.10 PDB: 1uy0_A* 1uyx_A* 1uyy_A* 1uyz_A* 1uz0_A* Back     alignment and structure
>2cdp_A Beta-agarase 1; carbohydrate-binding module, hydrolase; HET: GAL AAL; 1.59A {Saccharophagus degradans} PDB: 2cdo_A* Back     alignment and structure
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus} Back     alignment and structure
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida} Back     alignment and structure
>3th1_A Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxygenase family, oxidoreductase, iron bindin; HET: 3PH GOL; 3.40A {Pseudomonas putida} Back     alignment and structure
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B* Back     alignment and structure
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex} Back     alignment and structure
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A* Back     alignment and structure
>2y8k_A Arabinoxylanase, carbohydrate binding family 6; hydrolase; 1.47A {Clostridium thermocellum} Back     alignment and structure
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ... Back     alignment and structure
>3oba_A Beta-galactosidase; TIM barrel, tetramer, GH2, glycosidase, hydrolase; 2.75A {Kluyveromyces lactis} PDB: 3ob8_A Back     alignment and structure
>3n9t_A PNPC; phospholipid binds, N-terminal helix tunnel, oxidoreductase; HET: HGX FLC; 2.00A {Pseudomonas putida} Back     alignment and structure
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N* Back     alignment and structure
>2h4e_A Transthyretin; amyloid, sulfite, familial amyloidotic polyne transport protein; HET: CSU; 1.45A {Homo sapiens} SCOP: b.3.4.1 PDB: 2wqa_A* 1zcr_A 1zd6_A 2trh_A 1bz8_A 2qpf_A 1tfp_A Back     alignment and structure
>1dmh_A 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydrocarbon degradation, alpha/beta FO metalloenzyme, substrate, oxidoreductase; HET: LIO; 1.70A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1dlq_A* 1dlm_A* 1dlt_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 606
d1nkga2171 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB, 5e-46
>d1nkga2 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB, C-terminal domain {Aspergillus aculeatus [TaxId: 5053]} Length = 171 Back     information, alignment and structure

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Rhamnogalacturonase B, RhgB, C-terminal domain
domain: Rhamnogalacturonase B, RhgB, C-terminal domain
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  158 bits (400), Expect = 5e-46
 Identities = 33/193 (17%), Positives = 63/193 (32%), Gaps = 31/193 (16%)

Query: 411 GPTLWEIGIPDRSAAEFYIPNPNPKYINKLYVKHDRFRQYGLWERYAELHRKRDLVYEVW 470
           G T+++IG  D     F          N+L +     R    W           L Y V 
Sbjct: 2   GTTIFKIGEWDGQPTGFRNAA------NQLRMHPSDSRMSS-WG---------PLTYTVG 45

Query: 471 ANNYRKDWYFAQNTRKKGNKYEGSTWQIQFKLEGVVKKATYKLRVAVAAAH-GAELQVRV 529
           ++    D+  A                I+F      +     LR+    +  G   Q  +
Sbjct: 46  SSAL-TDFPMAVFKSVNN------PVTIKFTATSA-QTGAATLRIGTTLSFAGGRPQATI 97

Query: 530 NSRSARRPLFSSGSVGRENAIARHGIHGVYKLFNVDVPGKVLRKGNNTIYLSQPRKLDAF 589
           NS +      ++ +      + R    G+ ++++V +P   +  G NTI ++        
Sbjct: 98  NSYTG--SAPAAPTNLDSRGVTRGAYRGLGEVYDVSIPSGTIVAGTNTITINVISGSSGD 155

Query: 590 T----GIMYDYLR 598
           T      ++D + 
Sbjct: 156 TYLSPNFIFDCVE 168

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query606
d1nkga3250 Rhamnogalacturonase B, RhgB, N-terminal domain {As 100.0
d1nkga2171 Rhamnogalacturonase B, RhgB, C-terminal domain {As 100.0
d1nkga187 Rhamnogalacturonase B, RhgB, middle domain {Asperg 99.46
d1h8la179 Carboxypeptidase D C-terminal domain {Crested duck 98.57
d1vlfn179 Transhydroxylase beta subunit, BthL, C-terminal do 98.42
d1uwya1107 Carboxypeptidase M C-terminal domain {Human (Homo 97.81
d2b59b296 Cellulosomal scaffolding protein A {Clostridium th 93.66
d1w9sa_134 Hypothetical protein BH0236 {Bacillus halodurans [ 93.49
d2burb1238 Protocatechuate-3,4-dioxygenase, beta chain {Acine 93.08
d1xpna_170 Hypothetical protein PA1324 {Pseudomonas aeruginos 92.88
d3pcca_200 Protocatechuate-3,4-dioxygenase, alpha chain {Pseu 91.91
d3pccm_236 Protocatechuate-3,4-dioxygenase, beta chain {Pseud 90.85
d1dmha_309 Catechol 1,2-dioxygenase {Acinetobacter calcoaceti 90.36
d2bura1202 Protocatechuate-3,4-dioxygenase, alpha chain {Acin 89.8
d1s9aa_256 Chlorocatechol 1,2-dioxygenase {Rhodococcus opacus 89.43
d1cwva194 Invasin {Yersinia pseudotuberculosis [TaxId: 633]} 88.52
d1uxxx_125 Carbohydrate binding module from xylanase U {Clost 87.03
d1od3a_132 Putative xylanase {Clostridium stercorarium [TaxId 86.74
d1jz8a4293 beta-Galactosidase, domain 5 {Escherichia coli [Ta 86.31
d1uxza_131 Cellulase B (lichenase 5a) {Cellvibrio mixtus [Tax 84.59
d1jz8a3207 beta-Galactosidase {Escherichia coli [TaxId: 562]} 83.38
>d1nkga3 b.30.5.10 (A:1-250) Rhamnogalacturonase B, RhgB, N-terminal domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Rhamnogalacturonase B, RhgB, N-terminal domain
domain: Rhamnogalacturonase B, RhgB, N-terminal domain
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=2.1e-53  Score=412.12  Aligned_cols=234  Identities=15%  Similarity=0.162  Sum_probs=209.6

Q ss_pred             EEEEeCCEEEEeCCe---EEEEEeCCceeEEEEEEcCEEeccccCCCccCcCccceEEEEEEccCcEEEEEEEEeecCCC
Q 038979            6 QLHEQNNHVVMNNGI---LQVSISTPQGFVIGIQYKGNKNLLNVQNEEDNRGIEATNYKVIMRTKEQVELSFTRMWQPYT   82 (606)
Q Consensus         6 ~~~~~g~~vv~~Ng~---l~vtv~k~~g~itsl~y~G~e~l~~~~~~~~~~Gl~~~~~~v~~~~~~~i~vs~~~~~~~~~   82 (606)
                      =++++|+.+++|-|.   |+|+|++++|||+||+|+|+|+|+..+++|+++||++++|++.+.+ ++|+|+|+.      
T Consensus         3 G~T~sg~~yvVDtga~~~LvF~V~~s~gDitSi~Y~g~E~Q~~~k~ShI~SGLGsatVs~~~~~-~yIkVT~~~------   75 (250)
T d1nkga3           3 GITTSSSAYVIDTNAPNQLKFTVSRSSCDITSIIHYGTELQYSSQGSHIGSGLGSATVTATQSG-DYIKVTCVT------   75 (250)
T ss_dssp             EEEECSSEEEEECCCTTCEEEEEETTTCCEEEEEETTEECBCSSSCBEETTCCSSCEEEEEEET-TEEEEEEEC------
T ss_pred             ceEecCCcEEEeCCCCcceEEEEecCCCceEEEEECCEEeeccCccceeccCccceeEEeeccC-CEEEEEEEe------
Confidence            368889777777765   9999999999999999999999999999999999999999999754 899999998      


Q ss_pred             CCCccceeeeEEEEEEcCCceEEEEEEeecccCCCCCcccccEEEEeCCCCCCcceeeccccccccCCcccc-cccceee
Q 038979           83 NGTIAPVNIDKRFLMLRGSSGFYSYAIYKRLKGWPGFQLFNNRMVFKPNPDKFHYMIISGNRQREMPLQQDR-ERGHKLA  161 (606)
Q Consensus        83 ~g~~~~~~l~~~~v~r~g~sgiY~y~i~~~~~~~p~~~lge~R~v~Rl~~~~f~~~~~~d~r~~~~P~~~d~-~~g~~l~  161 (606)
                       ++     |.||||+|+|++.|||++ +  .+  ++++|||+|+|+||+.++||+.. ..        .+.. ..+..++
T Consensus        76 -~t-----LthYyv~r~G~~~IymaT-~--~~--aepsvGelRfIaRL~~~~lPn~~-p~--------~dvs~t~~~taI  135 (250)
T d1nkga3          76 -DT-----LTQYMVVHNGDPIIHMAT-Y--IT--AEPSIGELRFIARLNSDLLPNEE-PF--------GDVSTTADGTAI  135 (250)
T ss_dssp             -SS-----EEEEEEEETTCCEEEEEE-E--ES--SCCTTSCEEEEEEECTTTCCEEE-TT--------GGGGCCTTCEEE
T ss_pred             -cC-----cEEEEEeecCCceEEEEe-c--cC--CCCCccceeEEEecccccCCCCC-CC--------ccccccCCCcEE
Confidence             54     899999999999999999 4  23  68899999999999999999943 21        1121 3556779


Q ss_pred             eeceEEcCCCEeecceecccccccceeEEEEeCCCceEEEEEcCCCCcccCCCceecccccCCCc---eEEEEeeecccc
Q 038979          162 YEEAVLLPNGEVDDKYQYSMDAKDIRVHGWISTDSTVGFWQILPSSESRSFGPLKQFLTSHTGPI---SINTFHSTHYVG  238 (606)
Q Consensus       162 ~~e~v~l~~G~~~sKY~~s~~~~d~~vhG~~s~g~~vG~W~I~~s~E~~sGGP~kqdL~~h~g~~---~ln~~~s~H~~g  238 (606)
                      |.+||+++||+++||||.+.+++|+++|||+  |+.+++|||++++|.+|||||+|||++|.++.   +++||+|+|.+ 
T Consensus       136 EgsDVF~vdG~TrSKfYSs~R~IDd~~~~vs--g~~v~v~mi~~~~E~SSGGPFfRdI~~n~~~~~~~Ly~ymnsgH~Q-  212 (250)
T d1nkga3         136 EGSDVFLVGSETRSKFYSSERFIDDQRHCIA--GDAHRVCMILNQYESSSGGPFHRDINSNNGGSYNALYWYMNSGHVQ-  212 (250)
T ss_dssp             ETTTEEEETTEEEEGGGGCCBGGGCSEEEEE--CSSCEEEEECCCCTTCSSCTTCBCCCEEECSSCEEEEEEEECSTTC-
T ss_pred             ecccEEeECCEEehhhccccceecccEEEEe--cCCeEEEEEeCCccccCCCCcchhhhhcCCCCccceeEEeecCccc-
Confidence            9999999999999999999999999999998  89999999999999999999999999999876   99999999997 


Q ss_pred             CcccccccCCcccc-eeeceEEEEEcCCCC-CCCchhhHHHH
Q 038979          239 ENFGMKFKDGEAWK-KIFGPFLVYVNSVAG-KGDRQMLWRDA  278 (606)
Q Consensus       239 ~~~~~~~~~ge~w~-k~~GP~~~y~N~g~~-~~~~~~l~~Da  278 (606)
                               +|+|| +|||||.|+|+++.. +.++|..|+|.
T Consensus       213 ---------TE~~R~GlhGPY~l~Ft~~g~Ps~~lDtsff~~  245 (250)
T d1nkga3         213 ---------TESYRMGLHGPYSMYFSRSGTPSTSIDTSFFAD  245 (250)
T ss_dssp             ---------CSCCCCEEEEEEEEEEESSCCCCSCCCCGGGGG
T ss_pred             ---------chhhhcccCCceEEEEcCCCCCCCccchhhhhh
Confidence                     89999 999999999998655 45899999997
>d1nkga2 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB, C-terminal domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1nkga1 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, middle domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1h8la1 b.3.2.1 (A:305-383) Carboxypeptidase D C-terminal domain {Crested duck (Lophonetta specularioides) [TaxId: 8836]} Back     information, alignment and structure
>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]} Back     information, alignment and structure
>d1uwya1 b.3.2.1 (A:297-403) Carboxypeptidase M C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2b59b2 b.3.2.2 (B:8-103) Cellulosomal scaffolding protein A {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1w9sa_ b.18.1.10 (A:) Hypothetical protein BH0236 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2burb1 b.3.6.1 (B:303-540) Protocatechuate-3,4-dioxygenase, beta chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]} Back     information, alignment and structure
>d1xpna_ b.3.7.1 (A:) Hypothetical protein PA1324 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d3pcca_ b.3.6.1 (A:) Protocatechuate-3,4-dioxygenase, alpha chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d3pccm_ b.3.6.1 (M:) Protocatechuate-3,4-dioxygenase, beta chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1dmha_ b.3.6.1 (A:) Catechol 1,2-dioxygenase {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d2bura1 b.3.6.1 (A:4-200) Protocatechuate-3,4-dioxygenase, alpha chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]} Back     information, alignment and structure
>d1s9aa_ b.3.6.1 (A:) Chlorocatechol 1,2-dioxygenase {Rhodococcus opacus [TaxId: 37919]} Back     information, alignment and structure
>d1cwva1 b.1.14.1 (A:503-596) Invasin {Yersinia pseudotuberculosis [TaxId: 633]} Back     information, alignment and structure
>d1uxxx_ b.18.1.10 (X:) Carbohydrate binding module from xylanase U {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1od3a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium [TaxId: 1510]} Back     information, alignment and structure
>d1jz8a4 b.30.5.1 (A:731-1023) beta-Galactosidase, domain 5 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uxza_ b.18.1.10 (A:) Cellulase B (lichenase 5a) {Cellvibrio mixtus [TaxId: 39650]} Back     information, alignment and structure
>d1jz8a3 b.18.1.5 (A:13-219) beta-Galactosidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure