Citrus Sinensis ID: 038990
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 505 | 2.2.26 [Sep-21-2011] | |||||||
| Q7XA06 | 540 | Synaptotagmin-3 OS=Arabid | yes | no | 0.992 | 0.927 | 0.561 | 1e-170 | |
| B6ETT4 | 537 | Synaptotagmin-2 OS=Arabid | no | no | 0.990 | 0.931 | 0.510 | 1e-160 | |
| Q9SKR2 | 541 | Synaptotagmin-1 OS=Arabid | no | no | 0.992 | 0.926 | 0.511 | 1e-158 | |
| Q8L706 | 560 | Synaptotagmin-5 OS=Arabid | no | no | 0.962 | 0.867 | 0.304 | 2e-63 | |
| A0JJX5 | 569 | Synaptotagmin-4 OS=Arabid | no | no | 0.966 | 0.857 | 0.294 | 5e-60 | |
| Q5M7N9 | 889 | Extended synaptotagmin-3 | yes | no | 0.833 | 0.473 | 0.231 | 2e-28 | |
| Q5FWL4 | 872 | Extended synaptotagmin-2- | N/A | no | 0.849 | 0.491 | 0.237 | 2e-26 | |
| Q3TZZ7 | 845 | Extended synaptotagmin-2 | yes | no | 0.853 | 0.510 | 0.238 | 2e-25 | |
| Q5DTI8 | 891 | Extended synaptotagmin-3 | no | no | 0.570 | 0.323 | 0.262 | 1e-24 | |
| A0FGR8 | 921 | Extended synaptotagmin-2 | yes | no | 0.853 | 0.467 | 0.234 | 2e-24 |
| >sp|Q7XA06|SYT3_ARATH Synaptotagmin-3 OS=Arabidopsis thaliana GN=SYT3 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 597 bits (1540), Expect = e-170, Method: Compositional matrix adjust.
Identities = 302/538 (56%), Positives = 393/538 (73%), Gaps = 37/538 (6%)
Query: 1 MGLLSFLLGIFGFGIGIPIGFLIAFFIFVHSDATEITDPIIRPNDHEFDTSSVLDVFPEI 60
MG + +LGI GF IGIPIG ++ FF+ ++S + P RP E S +LD+ P+I
Sbjct: 1 MGFFTSVLGIIGFVIGIPIGLILGFFVLIYSQPSHQEYPPARPL-VETSISVLLDLLPDI 59
Query: 61 PLWVKHPDYDRIDWLNKFVSDLWPYLDKAICSTARSNLEPIFAEYIGKYCIRSVDFKTLT 120
PLW+K+PDY+R+DW NKF+S +WPYLDKA+C RS+++P+FA+YIG +CI S++F+ L+
Sbjct: 60 PLWMKNPDYERVDWFNKFISYMWPYLDKAVCGIIRSSVQPLFADYIGTFCIESIEFENLS 119
Query: 121 LGTLPPIIHGIKVCETNENELILEPALRWAGNPNITLALKFFSLQITVQLLDVQIRAAPR 180
LGTLPP +HG+K ETNE EL+ EP+++WAGNPNI L LK SL+I VQL+D+Q A R
Sbjct: 120 LGTLPPTVHGVKFYETNEKELLFEPSIKWAGNPNIVLVLKVLSLRIRVQLVDLQFFAIVR 179
Query: 181 IVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLVGGDMMAIPGLYQFIQETIRNQISALYL 240
+ LKPL+P FPCF + VSLMEKP VDFGLK++GGD+M+IPGLY+++QETI+ Q+S++Y
Sbjct: 180 VALKPLLPTFPCFGMVVVSLMEKPHVDFGLKVLGGDLMSIPGLYRYVQETIKRQVSSMYH 239
Query: 241 WPQPLEIPILDGSLGAIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKK 300
WPQ LEIPILD S ++KKPVG+LHV ++RA LLK D+ G SDPYV+LSL+GE++PAKK
Sbjct: 240 WPQVLEIPILDSSTASVKKPVGLLHVSILRARNLLKKDLLGTSDPYVKLSLTGEKLPAKK 299
Query: 301 TSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETK 360
T++K + LNPEWNE FKL VKDP +QVLQL V+DW+KVG HD+LGMQ++PL+ + P E K
Sbjct: 300 TTIKKRNLNPEWNEHFKLIVKDPNSQVLQLEVFDWDKVGGHDRLGMQMIPLQKINPGERK 359
Query: 361 ELTLDLVKNTN-PNDPQDKK-------------------FERKESEVGKATE-------- 392
E LDL+KN+N D DKK RKES K++E
Sbjct: 360 EFNLDLIKNSNVVMDSGDKKKRGRLEVDLRYVPFREESIKRRKESREEKSSEDDDFLSQA 419
Query: 393 -------YGAKDLEG-KHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLK 444
AKD+EG K H+NPYAVV+ RGE+KKTKM+KK RDP WNEEFQF EE P+K
Sbjct: 420 GLLSVAVQSAKDVEGKKKHSNPYAVVLFRGEKKKTKMLKKTRDPRWNEEFQFTLEEPPVK 479
Query: 445 EKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKW 502
E I +EV SK G RSKE LG+VDINL DV+ NGR+ +KYHLINS+NG + +EI+W
Sbjct: 480 ESIRVEVMSKGTGFHFRSKEELGHVDINLDDVVDNGRINQKYHLINSRNGIIHIEIRW 537
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May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|B6ETT4|SYT2_ARATH Synaptotagmin-2 OS=Arabidopsis thaliana GN=SYT2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 565 bits (1457), Expect = e-160, Method: Compositional matrix adjust.
Identities = 274/537 (51%), Positives = 384/537 (71%), Gaps = 37/537 (6%)
Query: 1 MGLLSFLLGIFGFGIGIPIGFLIAFFIFVHSDATEITDPIIRPNDHEFDTSSVLDVFPEI 60
MG++S +LG+ GFG G IG +I +++F++ +T++ DP I+P E D+ ++ +FPEI
Sbjct: 1 MGIISTILGVIGFGFGTTIGIVIGYYLFIYFQSTDVEDPEIKPL-VELDSETIATMFPEI 59
Query: 61 PLWVKHPDYDRIDWLNKFVSDLWPYLDKAICSTARSNLEPIFAEYIGKYCIRSVDFKTLT 120
P+WVK+PD+DRIDWLNK + +WPY+DKAIC A+S +PI AE I Y I SV+F+ LT
Sbjct: 60 PMWVKNPDFDRIDWLNKLIGHMWPYMDKAICKMAKSIAKPIIAEQIPNYKIDSVEFEMLT 119
Query: 121 LGTLPPIIHGIKVCETNENELILEPALRWAGNPNITLALKFFSLQITVQLLDVQIRAAPR 180
LG+LPP G+KV T++ E+I+E +++WAGNPNI + K F L+ TVQ++D+Q+ A PR
Sbjct: 120 LGSLPPSFQGMKVYATDDKEIIMELSVKWAGNPNIIVVAKAFGLKATVQVIDLQVYATPR 179
Query: 181 IVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLVGGDMMAIPGLYQFIQETIRNQISALYL 240
I LKPLVP+FPCFA I VSLM+KP+VDFGLKL+G D+MAIPGLY+F+QE I++Q++ +YL
Sbjct: 180 ITLKPLVPSFPCFANIFVSLMDKPQVDFGLKLLGADVMAIPGLYRFVQEIIKDQVANMYL 239
Query: 241 WPQPLEIPILDGSLGAIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKK 300
WP+ L + I+D S A+KKPVG+L VKVI+AI+L K D+ G SDPYV+L+LSG+++P KK
Sbjct: 240 WPKTLNVQIMDPS-KAMKKPVGLLSVKVIKAIKLKKKDLLGGSDPYVKLTLSGDKVPGKK 298
Query: 301 TSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETK 360
T VK LNPEWNE+F L VK+PE+Q LQL VYDWE+VG HDK+GM V+ L+ LTP E K
Sbjct: 299 TVVKHSNLNPEWNEEFDLVVKEPESQELQLIVYDWEQVGKHDKIGMNVIQLKDLTPEEPK 358
Query: 361 ELTLDLVKNTNPNDPQDKKFERK---------------------ESEVGKATE------- 392
+TL+L+K+ P +P +K + + V KA E
Sbjct: 359 LMTLELLKSMEPKEPVSEKSRGQLVVEVEYKPFKDDDIPENIDDPNAVEKAPEGTPSTGG 418
Query: 393 ------YGAKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEK 446
+ A+DLEGK+H NP ++ RGE++KTK +KK R+P W+E+FQF +E P+ +K
Sbjct: 419 LLVVIVHEAEDLEGKYHTNPSVRLLFRGEERKTKRVKKNREPRWDEDFQFPLDEPPINDK 478
Query: 447 IHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWK 503
+H+EV S L + KE+LGYV INL DV+ N R+ +KYHLI+SKNG +Q+E++W+
Sbjct: 479 LHVEVISSSSRL-IHPKETLGYVVINLGDVVSNRRINDKYHLIDSKNGRIQIELQWR 534
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May play an important role in regulating an unconventional protein trafficking from the cytosol to the extracelluar matrix. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SKR2|SYT1_ARATH Synaptotagmin-1 OS=Arabidopsis thaliana GN=SYT1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 558 bits (1437), Expect = e-158, Method: Compositional matrix adjust.
Identities = 277/542 (51%), Positives = 383/542 (70%), Gaps = 41/542 (7%)
Query: 1 MGLLSFLLGIFGFGIGIPIGFLIAFFIFVHSDATEITDPIIRPNDHEFDTSSVLDVFPEI 60
MG S +LG GFG+GI +G +I + +FV+ ++ DP IR + + D ++L + PEI
Sbjct: 1 MGFFSTILGFCGFGVGISLGLVIGYVLFVYLLPNDVKDPEIR-SIADQDPKAMLRMLPEI 59
Query: 61 PLWVKHPDYDRIDWLNKFVSDLWPYLDKAICSTARSNLEPIFAEYIGKYCIRSVDFKTLT 120
PLWVK+PD+DR+DW+N+F+ +WPYLDKAIC TA++ +PI E I KY I SV+F+TLT
Sbjct: 60 PLWVKNPDFDRVDWINRFLEYMWPYLDKAICKTAKNIAKPIIEEQIPKYKIDSVEFETLT 119
Query: 121 LGTLPPIIHGIKVCETNENELILEPALRWAGNPNITLALKFFSLQITVQLLDVQIRAAPR 180
LG+LPP G+KV T+E ELI+EP L+WA NPNI +A+K F L+ TVQ++D+Q+ A PR
Sbjct: 120 LGSLPPTFQGMKVYLTDEKELIMEPCLKWAANPNILVAIKAFGLKATVQVVDLQVFAQPR 179
Query: 181 IVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLVGGDMMAIPGLYQFIQETIRNQISALYL 240
I LKPLVP+FPCFA I VSLMEKP VDFGLKL G D+M+IPGLY+F+QE I++Q++ +YL
Sbjct: 180 ITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLGGADLMSIPGLYRFVQEQIKDQVANMYL 239
Query: 241 WPQPLEIPILDGSLGAIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKK 300
WP+ L +PILD + A ++PVGI+HVKV+RA+ L K D+ G +DP+V++ LS ++IP+KK
Sbjct: 240 WPKTLVVPILDPA-KAFRRPVGIVHVKVVRAVGLRKKDLMGGADPFVKIKLSEDKIPSKK 298
Query: 301 TSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETK 360
T+VK K LNPEWNE+FK +V+DP+TQVL+ VYDWE+VG +K+GM V+ L+ + P+E K
Sbjct: 299 TTVKHKNLNPEWNEEFKFSVRDPQTQVLEFSVYDWEQVGNPEKMGMNVLALKEMVPDEHK 358
Query: 361 ELTLDLVKNTNPND---PQDKKFERKESE--------------------VGKATE----- 392
TL+L K + + P DK + E E V KA E
Sbjct: 359 AFTLELRKTLDGGEDGQPPDKYRGKLEVELLYKPFTEEEMPKGFEETQAVQKAPEGTPAA 418
Query: 393 --------YGAKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLK 444
+ A+D+EGKHH NPY + +GE++KTK +KK RDP WNEEF F EE P++
Sbjct: 419 GGMLVVIVHSAEDVEGKHHTNPYVRIYFKGEERKTKHVKKNRDPRWNEEFTFMLEEPPVR 478
Query: 445 EKIHIEV--KSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKW 502
EK+H+EV S R GL L KE+LGYVDI + DV++N R+ +K+HLI+SKNG +Q+E++W
Sbjct: 479 EKLHVEVLSTSSRIGL-LHPKETLGYVDIPVVDVVNNKRMNQKFHLIDSKNGKIQIELEW 537
Query: 503 KA 504
+
Sbjct: 538 RT 539
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Plays an important role in maintaining plasma membrane integrity during freezing and osmotic stresses. May function in membrane resealing during calcium-dependent freezing tolerance. May regulate endocytosis and endosome recycling at the plasma membrane and cell-to-cell trafficking of cabbage leaf curl virus (CaLCuV) and tobacco mosaic virus (TMV) movement proteins via plasmodesmata. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L706|SYT5_ARATH Synaptotagmin-5 OS=Arabidopsis thaliana GN=SYT5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 244 bits (622), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 171/561 (30%), Positives = 274/561 (48%), Gaps = 75/561 (13%)
Query: 11 FGFGIGIPIGFLIAFFIFVHSDATEITDPIIRP----NDHEFDTSSVLD----VFPEI-P 61
GF +G+ IG L+ I + E + +R F +V D + PE P
Sbjct: 1 MGFIVGVVIGLLVGIAIIIGFVKLENSRSKLRSELANTVAAFARMTVEDSRKLLPPEFYP 60
Query: 62 LWVKHPDYDRIDWLNKFVSDLWPYLDKAICSTARSNLEPIFAEYIGKYCIRSVDFKTLTL 121
WV + ++ WLN ++ +WPY+D+A ++++EP+ +Y + S+ F LTL
Sbjct: 61 SWVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQY-RPAIVASLTFSKLTL 119
Query: 122 GTLPPIIHGIKVCETNENELILEPALRWAGNPNITLALK-FFSLQITVQLLDVQIRAAPR 180
GT+ P G+ V + ++N + LE ++W GNPNI L +K + + +Q+ ++ R
Sbjct: 120 GTVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVFR 179
Query: 181 IVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLVGGDMMAIPGLYQFIQETIRNQISALYL 240
++ +PLV FPCF ++VSL EK ++DF LK+VGGD+ AIPGL + I+ETIR+ +
Sbjct: 180 LIFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSIT 239
Query: 241 WPQPLEIPILDGSLGAIK-KPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAK 299
WP IPI+ G ++ KPVG+L VK+++A L D+ G SDP+ ++ + R K
Sbjct: 240 WPVRKVIPIIPGDYSDLELKPVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREKTK 299
Query: 300 KTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNET 359
++ LNP WNE F+ V+D TQ L + +YD E V + +G + L L P +
Sbjct: 300 RSKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQASELIGCAQIRLCELEPGKV 359
Query: 360 KELTLDLVKN----------------------------TNP--------------NDPQD 377
K++ L LVK+ NP ND D
Sbjct: 360 KDVWLKLVKDLEIQRDTKNRGEVHLELLYIPYGSGNGIVNPFVTSSMTSLERVLKNDTTD 419
Query: 378 KK--FERKESE----------VGKATEYGAKDLEGKHHNNPYAVVICR--GEQKKTKMIK 423
++ RK + V A E +DL GK +PY V+ + G + KT+++
Sbjct: 420 EENASSRKRKDVIVRGVLSVTVISAEEIPIQDLMGKA--DPYVVLSMKKSGAKSKTRVVN 477
Query: 424 KCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLK 483
+P+WN+ F F E+ L + + +EV K+ +G + L V+ K
Sbjct: 478 DSLNPVWNQTFDFVVEDG-LHDMLVLEVWDHDT----FGKDYIGRCILTLTRVIMEEEYK 532
Query: 484 EKYHLINSKNGAVQVEIKWKA 504
+ Y L SK G +Q+ +KW A
Sbjct: 533 DWYPLDESKTGKLQLHLKWMA 553
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May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|A0JJX5|SYT4_ARATH Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 232 bits (591), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 168/570 (29%), Positives = 270/570 (47%), Gaps = 82/570 (14%)
Query: 4 LSFLLGIFGFGIGIPIGFLIAFFIFVHSDATEITDPIIRPNDHEFDTSSVLD---VFPE- 59
+ FL G+F GI + G ++AF + +T D + F +V D + P
Sbjct: 1 MGFLFGLF-IGIAVSFGLVVAFARYSSVRSTRRAD--LAKTIAAFARMTVQDSRKLLPGD 57
Query: 60 -IPLWVKHPDYDRIDWLNKFVSDLWPYLDKAICSTARSNLEPIFAEYIGKYCIRSVDFKT 118
P WV +++WLN + +WPY+++A +S++EP+ +Y + S+ F
Sbjct: 58 FYPSWVVFSQRQKLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQYT-PAMLASLKFSK 116
Query: 119 LTLGTLPPIIHGIKVCETNE--NELILEPALRWAGNPNITLALK-FFSLQITVQLLDVQI 175
TLGT+ P G+ + E+ N + +E ++W GNP I L +K + + +++ ++
Sbjct: 117 FTLGTVAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDVKTLLGVSLPIEVKNIGF 176
Query: 176 RAAPRIVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLVGGDMMAIPGLYQFIQETIRNQI 235
R++ KPLV FPCF ++ SL EK +DF LK++GG++ +IPG+ I+ETIR+ I
Sbjct: 177 TGVFRLIFKPLVDEFPCFGALSYSLREKKGLDFTLKVIGGELTSIPGISDAIEETIRDAI 236
Query: 236 SALYLWPQPLEIPILDGSLGAIK-KPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE 294
WP IPIL G ++ KPVG L VKV++A L D+ G SDPY + +
Sbjct: 237 EDSITWPVRKIIPILPGDYSDLELKPVGKLDVKVVQAKDLANKDMIGKSDPYAIVFIRPL 296
Query: 295 RIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSL 354
KKT +LNP WNE F+ V+D TQ L + V+D E VG+ +G VPL L
Sbjct: 297 PDRTKKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEGVGSSQLIGAAQVPLNEL 356
Query: 355 TPNETKELTLDLVKN----------------------------TNPNDPQD-----KKFE 381
P + K++ L LVK+ NP +P +K
Sbjct: 357 VPGKVKDIWLKLVKDLEIQRDTKNRGQVQLELLYCPLGKEGGLKNPFNPDYSLTILEKVL 416
Query: 382 RKESEVGKATEYG---------------------------AKDLEGKHHNNPYAVVICRG 414
+ ESE AT+ A D GK + + V+ +
Sbjct: 417 KPESEDSDATDMKKLVTSKKKDVIVRGVLSVTVVAAEDLPAVDFMGKA--DAFVVITLKK 474
Query: 415 EQ--KKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDIN 472
+ KT+++ +P+WN+ F F E+A L + + +EV + K+ +G V +
Sbjct: 475 SETKSKTRVVPDSLNPVWNQTFDFVVEDA-LHDLLTLEVWDHDK----FGKDKIGRVIMT 529
Query: 473 LHDVLHNGRLKEKYHLINSKNGAVQVEIKW 502
L V+ G +E + L +K+G + V +KW
Sbjct: 530 LTRVMLEGEFQEWFELDGAKSGKLCVHLKW 559
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May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5M7N9|ESYT3_XENTR Extended synaptotagmin-3 OS=Xenopus tropicalis GN=esyt3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 115/497 (23%), Positives = 215/497 (43%), Gaps = 76/497 (15%)
Query: 59 EIPLWVKHPDYDRIDWLNKFVSDLWPYLDKAICSTARSNLEPIFAEYIGKYCIRSVDFKT 118
++P WV PD +R++WLNK V +WPY+ + + +EP+ +++ F
Sbjct: 146 QLPAWVNFPDVERVEWLNKVVGQMWPYIGMYVEKMFQDKVEPLVRSSSAH--LKAFTFTK 203
Query: 119 LTLGTLPPIIHGIKVCETN--ENELILEPALRWAGNPNITLALKFFSLQITVQLLDVQIR 176
+ LG P I+G+K N + E+IL+ L + G+ I + +K + VQ+
Sbjct: 204 VHLGEKFPRINGVKSYTKNVDKREVILDLQLSYNGDVEINVEVKKM---CKAGVKGVQLH 260
Query: 177 AAPRIVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLVGGDMMAIPGLYQFIQETIRNQIS 236
R++L PL+P P + + +++P +D + +++ IPG+ F I + I+
Sbjct: 261 GTLRVILAPLLPDLPFVGAVTMFFIQRPHLDINWTGL-TNVLEIPGVSDFSDSMIVDMIA 319
Query: 237 ALYLWPQPLEIPILDGSLGAIKK---PVGILHVKVIRAIRLLKMD------IFGASDPYV 287
+ + P +P+ A + P G+L + +I A L+ D I G SDPY
Sbjct: 320 SHLVLPNRFTVPLSSQVQAAQLRFPLPHGVLRLHLIEAEDLIPKDNYLKGIIRGKSDPYA 379
Query: 288 QLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQ 347
L + + K+ + LNP+W E ++ V + Q L++ +YD E D LG
Sbjct: 380 VLRIGNQNF---KSRTIKENLNPKWGEMYEFVVHEVPGQDLEVDLYD-EDPDKDDFLGSL 435
Query: 348 VVPLRSL--------------TPNETKELTLDLVKNTNPNDPQDKKFERKESEVGKAT-- 391
V+ L + P+ + L L+ + P+ +K + + A
Sbjct: 436 VIGLEGVMQDRVVDEWFPLSDVPSGSVHLRLEWLSLL----PKSEKLSEAKGGISTAMLI 491
Query: 392 --------------EYGAKDLEGKHHN-----------NPYAVVICRGEQKKTKMIKKCR 426
EY + + + N Y ++ + K+K
Sbjct: 492 VYLDSASALPRNHFEYSSSEYTTRKQRHMTYTKTDKDPNSYVLMSVGKKSVKSKTCTGST 551
Query: 427 DPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLK--E 484
+P+W + F F ++ ++ +H+EVK R + +LG +D+ LH +L N L +
Sbjct: 552 EPVWGQAFAFFIQDVHMQH-LHLEVKDSER------QCALGMLDLPLHRLLGNEELTADQ 604
Query: 485 KYHLINSK-NGAVQVEI 500
++ L NS N ++++I
Sbjct: 605 RFPLANSGPNSTIKMKI 621
|
May play a role as calcium-regulated intrinsic membrane protein. Xenopus tropicalis (taxid: 8364) |
| >sp|Q5FWL4|EST2A_XENLA Extended synaptotagmin-2-A OS=Xenopus laevis GN=esyt2-a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 122/513 (23%), Positives = 227/513 (44%), Gaps = 84/513 (16%)
Query: 59 EIPLWVKHPDYDRIDWLNKFVSDLWPYLDKAICSTARSNLEPIFAEYIGKYCIRSVDFKT 118
++P WV PD +R +WLNK V +WPY+ + I R +EP A + + +F
Sbjct: 110 DLPAWVHFPDIERAEWLNKTVKHMWPYICQFIEKLFRETIEP--AVRGANAHLSTFNFTK 167
Query: 119 LTLGTLPPIIHGIKVCETN--ENELILEPALRWAGNPNITLALKFFSLQITVQLLDVQIR 176
+ +G+ P I+G+KV N + ++IL+ + + G I L +K + + V+ +Q+
Sbjct: 168 IDMGSQPLRINGVKVYTENVDKRQIILDLQISFVGETEIDLEVKRYFCRAGVK--SIQLH 225
Query: 177 AAPRIVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLVGGDMMAIPGLYQFIQETIRNQIS 236
R++L+PL+ P +++ + KP ++ + +M+ +PGL I + IS
Sbjct: 226 GTMRVILEPLIGDVPIVGALSIFFLRKPLLEINWTGL-TNMLDMPGLNGLSDTIILDIIS 284
Query: 237 ALYLWPQPLEIPIL-DGSLGAIKKPV--GILHVKVIRAIRLLKMDIF------GASDPYV 287
+ P + +P++ D + ++ P+ G+L + + A L+ D + G SDPY
Sbjct: 285 NYLVLPNRITVPLVSDVQIAQLRFPIPKGVLRIHFLEAQDLMWKDTYMKGLVKGKSDPYG 344
Query: 288 QLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQ 347
+ L + +K V + LNP+WNE ++ V + Q L++ ++D E D LG
Sbjct: 345 VVRLGNQVFQSK---VIKENLNPKWNEVYEALVHEHPGQELEIELFD-EDTDKDDFLGSL 400
Query: 348 VVPLRS---------------------------LTPNETKELTLDLVKNTNPNDPQDKKF 380
++ L LTPN T + LD V + D +D+
Sbjct: 401 LIDLVEVEKERVVDEWFSLDEATSGKLHLKLEWLTPNSTTD-NLDQVLKSIKAD-KDQAN 458
Query: 381 ERKESE-----VGKATEYGAKDLEGKHHN--------------------NPYAVVICRGE 415
+ S + A LE H NPY +
Sbjct: 459 DGLSSALLILYLDSARSLPNNPLEINHDGMKKAAVEKAKKAGKKIGSSPNPYVLFSVGHA 518
Query: 416 QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHD 475
+++K+ K +P+W + F F F P ++ + +EVK + + S+G + I L
Sbjct: 519 VQESKVKYKTAEPLWEQTFTF-FVHNPKRQDLEVEVKDENH------QSSMGNLKIPLSQ 571
Query: 476 VLHNGRL--KEKYHLINS-KNGAVQVEIKWKAI 505
+L + L +++HL NS N +++++I + +
Sbjct: 572 ILASEDLTMNQRFHLNNSGPNTSLKMKIALRIL 604
|
May play a role as calcium-regulated intrinsic membrane protein. Xenopus laevis (taxid: 8355) |
| >sp|Q3TZZ7|ESYT2_MOUSE Extended synaptotagmin-2 OS=Mus musculus GN=Esyt2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 117/490 (23%), Positives = 227/490 (46%), Gaps = 59/490 (12%)
Query: 59 EIPLWVKHPDYDRIDWLNKFVSDLWPYLDKAICSTARSNLEPIFAEYIGKYCIRSVDFKT 118
++P WV PD +R +WLNK V +WP++ + I R +EP A + + F
Sbjct: 106 DLPAWVHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEP--AVRGANAHLSTFSFTK 163
Query: 119 LTLGTLPPIIHGIKVCETN--ENELILEPALRWAGNPNITLALKFFSLQITVQLLDVQIR 176
+ +G P ++G+KV N + ++IL+ + + GN I L +K + + V+ +QI
Sbjct: 164 VDVGQQPLRVNGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRAGVK--SIQIH 221
Query: 177 AAPRIVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLVGGDMMAIPGLYQFIQETIRNQIS 236
R++L+PL+ P +++ + KP ++ + +++ IPGL I + IS
Sbjct: 222 GTMRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGL-TNLLDIPGLNGLSDTIILDIIS 280
Query: 237 ALYLWPQPLEIPIL-DGSLGAIKKPV--GILHVKVIRAIRLLKMDIF------GASDPYV 287
+ P + +P++ + + ++ P+ G+L + I A L D + G SDPY
Sbjct: 281 NYLVLPNRITVPLVSEVQIAQLRFPIPKGVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYG 340
Query: 288 QLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQ 347
+ + + +K V + L+P+WNE ++ V + Q L++ ++D E D LG
Sbjct: 341 IIRVGNQIFQSK---VIKENLSPKWNEVYEALVYEHPGQELEIELFD-EDPDKDDFLGSL 396
Query: 348 VVPLRSLTPNETKE--LTLDLVKNTN-----------PNDPQ------DKKFERKESEVG 388
++ L + + TLD V P+ D + ++ ++ G
Sbjct: 397 MIDLIEVEKERLLDEWFTLDEVPKGKLHLKLEWLTLMPDAANLDKVLADIRADKDQASDG 456
Query: 389 KATEY------GAKDL-EGKHHN---NPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDF 438
++ A++L GK N NP + + +++K+ K +P+W E F F F
Sbjct: 457 LSSALLILYLDSARNLPSGKKINSNPNPLVQMSVGHKAQESKIRYKTSEPVWEENFTF-F 515
Query: 439 EEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVL--HNGRLKEKYHLINSK-NGA 495
P ++ + +EVK ++ + SLG + I L +L N + +++ L NS N
Sbjct: 516 IHNPRRQDLEVEVKDEQH------QCSLGSLRIPLSQLLTSDNMTINQRFQLSNSGPNST 569
Query: 496 VQVEIKWKAI 505
++++I + +
Sbjct: 570 LKMKIALRVL 579
|
May play a role as calcium-regulated intrinsic membrane protein. Mus musculus (taxid: 10090) |
| >sp|Q5DTI8|ESYT3_MOUSE Extended synaptotagmin-3 OS=Mus musculus GN=Esyt3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 152/308 (49%), Gaps = 20/308 (6%)
Query: 60 IPLWVKHPDYDRIDWLNKFVSDLWPYLDKAICSTARSNLEPIFAEYIGKYCIRSVDFKTL 119
+P W+ PD +R++W NK + +WPYL + + R LEP E +R+ F L
Sbjct: 110 LPAWIHFPDVERVEWANKIIIQIWPYLSMIMENKIREKLEPKIRE--KSIHLRTFTFTKL 167
Query: 120 TLGTLPPIIHGIKVC--ETNENELILEPALRWAGNPNITLALKFFSLQITVQLLDVQIRA 177
G P ++G+KV + N ++ L+ + + G+ I++ L+ +I + VQ++
Sbjct: 168 YFGQKCPKVNGVKVHTDKRNRRKVTLDLQICYIGDCEISVELQ----KIRGGVSGVQLQG 223
Query: 178 APRIVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLVGGDMMAIPGLYQFIQETIRNQISA 237
R++L+PL+ P + V ++KP + + +++ +PG+ + + + I+A
Sbjct: 224 TLRVILEPLLVDKPFIGAVTVFFLQKPHLQINWTGL-TNLLDMPGINELSDSLLEDLIAA 282
Query: 238 LYLWPQPLEIPI---LDGSLGAIKKPVGILHVKVIRAIRLLKMDIF----GASDPYVQLS 290
+ P + +P+ LD + + P G++ V ++ A +L + D F G SDPY ++S
Sbjct: 283 HLVLPNRVTVPVKKGLDVTNLRVPLPCGVIRVHLLEAKKLAQKDNFLGLGGKSDPYAKVS 342
Query: 291 LSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVP 350
+ + ++ K LNP WNE F+ V + Q L++ +YD E D LG +
Sbjct: 343 IGLQHC---RSRTIYKNLNPTWNEVFEFMVYEVPGQDLEVDLYD-EDTDKDDFLGSLQIC 398
Query: 351 LRSLTPNE 358
L + N
Sbjct: 399 LGDVMKNR 406
|
May play a role as calcium-regulated intrinsic membrane protein. Mus musculus (taxid: 10090) |
| >sp|A0FGR8|ESYT2_HUMAN Extended synaptotagmin-2 OS=Homo sapiens GN=ESYT2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 115/490 (23%), Positives = 227/490 (46%), Gaps = 59/490 (12%)
Query: 59 EIPLWVKHPDYDRIDWLNKFVSDLWPYLDKAICSTARSNLEPIFAEYIGKYCIRSVDFKT 118
++P WV PD +R +WLNK V +WP++ + I R +EP A + + F
Sbjct: 182 DLPAWVHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEP--AVRGANTHLSTFSFTK 239
Query: 119 LTLGTLPPIIHGIKVCETN--ENELILEPALRWAGNPNITLALKFFSLQITVQLLDVQIR 176
+ +G P I+G+KV N + ++IL+ + + GN I L +K + + V+ +QI
Sbjct: 240 VDVGQQPLRINGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRAGVK--SIQIH 297
Query: 177 AAPRIVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLVGGDMMAIPGLYQFIQETIRNQIS 236
R++L+PL+ P +++ + KP ++ + +++ +PGL I + IS
Sbjct: 298 GTMRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGL-TNLLDVPGLNGLSDTIILDIIS 356
Query: 237 ALYLWPQPLEIPIL-DGSLGAIKKPV--GILHVKVIRAIRLLKMDIF------GASDPYV 287
+ P + +P++ + + ++ PV G+L + I A L D + G SDPY
Sbjct: 357 NYLVLPNRITVPLVSEVQIAQLRFPVPKGVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYG 416
Query: 288 QLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQ 347
+ + + ++ V + L+P+WNE ++ V + Q L++ ++D E D LG
Sbjct: 417 IIRVGNQIF---QSRVIKENLSPKWNEVYEALVYEHPGQELEIELFD-EDPDKDDFLGSL 472
Query: 348 VVPLRSLTPNETKE--LTLDLVKNTN-----------PNDPQ------DKKFERKESEVG 388
++ L + + TLD V PN D K ++ ++ G
Sbjct: 473 MIDLIEVEKERLLDEWFTLDEVPKGKLHLRLEWLTLMPNASNLDKVLTDIKADKDQANDG 532
Query: 389 KATEY------GAKDL-EGK---HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDF 438
++ A++L GK + NP + + +++K+ K +P+W E F F F
Sbjct: 533 LSSALLILYLDSARNLPSGKKISSNPNPVVQMSVGHKAQESKIRYKTNEPVWEENFTF-F 591
Query: 439 EEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVL--HNGRLKEKYHLINSK-NGA 495
P ++ + +EV+ ++ + SLG + + L +L + + +++ L NS N
Sbjct: 592 IHNPKRQDLEVEVRDEQH------QCSLGNLKVPLSQLLTSEDMTVSQRFQLSNSGPNST 645
Query: 496 VQVEIKWKAI 505
++++I + +
Sbjct: 646 IKMKIALRVL 655
|
May play a role as calcium-regulated intrinsic membrane protein. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 505 | ||||||
| 255556980 | 512 | calcium lipid binding protein, putative | 0.924 | 0.912 | 0.675 | 0.0 | |
| 359481536 | 546 | PREDICTED: extended synaptotagmin-2-like | 0.996 | 0.921 | 0.642 | 0.0 | |
| 225449024 | 544 | PREDICTED: extended synaptotagmin-2 [Vit | 0.998 | 0.926 | 0.623 | 0.0 | |
| 297741612 | 547 | unnamed protein product [Vitis vinifera] | 0.996 | 0.919 | 0.636 | 0.0 | |
| 224097856 | 547 | predicted protein [Populus trichocarpa] | 0.998 | 0.921 | 0.587 | 0.0 | |
| 255588268 | 541 | calcium lipid binding protein, putative | 0.998 | 0.931 | 0.608 | 0.0 | |
| 224113059 | 544 | predicted protein [Populus trichocarpa] | 0.994 | 0.922 | 0.581 | 0.0 | |
| 449464400 | 548 | PREDICTED: synaptotagmin-3-like [Cucumis | 0.992 | 0.914 | 0.597 | 0.0 | |
| 449527095 | 548 | PREDICTED: synaptotagmin-3-like [Cucumis | 0.992 | 0.914 | 0.595 | 0.0 | |
| 356535625 | 545 | PREDICTED: tricalbin-2-like [Glycine max | 0.998 | 0.924 | 0.578 | 0.0 |
| >gi|255556980|ref|XP_002519523.1| calcium lipid binding protein, putative [Ricinus communis] gi|223541386|gb|EEF42937.1| calcium lipid binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/509 (67%), Positives = 403/509 (79%), Gaps = 42/509 (8%)
Query: 38 DPIIRPNDHEFDTSSVLDVFPEIPLWVKHPDYDRIDWLNKFVSDLWPYLDKAICSTARSN 97
+PIIR HE DT+S+LDV PEIP+WVKHPDYDRIDWLNKF+SDLWPYLDKA+CS S
Sbjct: 5 EPIIR-KLHELDTNSMLDVLPEIPMWVKHPDYDRIDWLNKFISDLWPYLDKAVCSLISST 63
Query: 98 LEPIFAEYIGKYCIRSVDFKTLTLGTLPPIIHGIKVCETNENELILEPALRWAGNPNITL 157
PIFAEY K+ ++S+DFK+L+LGTLPPIIHGIKV ETNE EL++EPA++WAGN +ITL
Sbjct: 64 ANPIFAEYTDKFFMKSIDFKSLSLGTLPPIIHGIKVHETNEKELLIEPAIKWAGNSDITL 123
Query: 158 ALKFFSLQITVQLLDVQIRAAPRIVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLVGGDM 217
KF SL I VQLLDVQ+ AAPRI L+PLVP FPCFA + VSL+EKP +DFGLKL+G D+
Sbjct: 124 VFKFLSLPIIVQLLDVQVSAAPRITLRPLVPTFPCFASVVVSLLEKPHIDFGLKLLGADV 183
Query: 218 MAIPGLYQFIQETIRNQISALYLWPQPLEIPILDGSLGAIKKPVGILHVKVIRAIRLLKM 277
MAIPGLYQF+QE I QI++LYLWPQ L+IPILDGS+GAIKKPVGILHVK++RA++LLKM
Sbjct: 184 MAIPGLYQFVQELIAKQIASLYLWPQALDIPILDGSVGAIKKPVGILHVKIVRALKLLKM 243
Query: 278 DIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEK 337
D+ G SDP+V+LSLSGER+PAKKTS+KMK LNPEWNE FKL VKDP++QVLQLHVYDWEK
Sbjct: 244 DLLGTSDPFVKLSLSGERLPAKKTSIKMKNLNPEWNEHFKLIVKDPDSQVLQLHVYDWEK 303
Query: 338 VGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNPNDPQDKK------------------ 379
VGTHDKLGMQVVPLR L+P ETK LTLDLVKNTN NDP +KK
Sbjct: 304 VGTHDKLGMQVVPLRLLSPCETKRLTLDLVKNTNRNDPHNKKHRGKLVVEMTFNPFKEDN 363
Query: 380 ---------FERKESEVGK--------------ATEYGAKDLEGKHHNNPYAVVICRGEQ 416
+ERK S +G+ T A+D+EG+HHNNPYA+VI RGEQ
Sbjct: 364 NRFSGPLDSYERKGSSIGRIPEDISLYRGGLLLVTVQRAEDVEGRHHNNPYALVIFRGEQ 423
Query: 417 KKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDV 476
KKTK+IKK RDP WNEEFQF EEAPL+EKIHIEV S+R G R KE LGYVDINL DV
Sbjct: 424 KKTKLIKKTRDPSWNEEFQFVLEEAPLQEKIHIEVMSRRTGFSFRPKEMLGYVDINLVDV 483
Query: 477 LHNGRLKEKYHLINSKNGAVQVEIKWKAI 505
++NGR+ EKYHLINSKNG + V+I+WKA+
Sbjct: 484 VYNGRINEKYHLINSKNGIIIVDIRWKAL 512
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481536|ref|XP_002276374.2| PREDICTED: extended synaptotagmin-2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/546 (64%), Positives = 423/546 (77%), Gaps = 43/546 (7%)
Query: 1 MGLLSFLLGIFGFGIGIPIGFLIAFFIFVHSDATEITDPIIRPNDHEFDTSSVLDVFPEI 60
MG +S LLGI GFG+GIP G ++ +FIF+H++ ++ PIIRP H+ D+ S+LD+ E+
Sbjct: 1 MGFVSALLGIIGFGVGIPFGLVLGYFIFIHNEPQDVKVPIIRPL-HDLDSDSLLDLLDEM 59
Query: 61 PLWVKHPDYDRIDWLNKFVSDLWPYLDKAICSTARSNLEPIFAEYIGKYCIRSVDFKTLT 120
PLWVK PDYDR DWLNKF+ D+WPYLDKAIC RS EPIFAEYIGK+ I+S+DF+TL+
Sbjct: 60 PLWVKTPDYDRADWLNKFIFDMWPYLDKAICGIIRSTTEPIFAEYIGKFQIKSIDFETLS 119
Query: 121 LGTLPPIIHGIKVCETNE-NELILEPALRWAGNPNITLALKFFSLQITVQLLDVQIRAAP 179
LGTL PI+HGIK ETNE NELILEPA+RWAGNPNI L LK SL+IT+QL D+QI P
Sbjct: 120 LGTLSPIVHGIKAQETNEVNELILEPAIRWAGNPNIILVLKLLSLRITLQLTDLQISMVP 179
Query: 180 RIVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLVGGDMMAIPGLYQFIQETIRNQISALY 239
RIVLKPLVP FPCFA + VSLMEKP VDFGLKL+GGD+MAIPGLYQFIQ+TIR Q+++LY
Sbjct: 180 RIVLKPLVPTFPCFASVVVSLMEKPHVDFGLKLLGGDIMAIPGLYQFIQKTIRRQVASLY 239
Query: 240 LWPQPLEIPILDGSLGAIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAK 299
LWPQ LE+PILD + IKKPVG+LHVKV+RA +LLKMDI GASDPYV+LSLSGER+PAK
Sbjct: 240 LWPQTLEMPILDALVAPIKKPVGLLHVKVVRARKLLKMDILGASDPYVKLSLSGERLPAK 299
Query: 300 KTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNET 359
KTS+KMKTL+PEWNEDFKL VKDP++QVLQLHVYDWEKVG HDKLGMQVVPLR LTPN T
Sbjct: 300 KTSIKMKTLDPEWNEDFKLIVKDPKSQVLQLHVYDWEKVGMHDKLGMQVVPLRLLTPNMT 359
Query: 360 KELTLDLVKNTNPNDPQDKKFE---------------------------RKESEVGKATE 392
K+ TLDL+KNTNPNDP +KK+ R +S +ATE
Sbjct: 360 KQFTLDLLKNTNPNDPHNKKYRGKIVVEMTFNPFKEDSERFSGLLNEHMRNDSGGERATE 419
Query: 393 --------------YGAKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDF 438
GA+ +EGKHHNNPYA+++ +GE+K TK+IKK RDP WNEEF+F
Sbjct: 420 DVPSSGAGLLLVVIQGAEHVEGKHHNNPYAIILFKGERKNTKLIKKTRDPCWNEEFEFML 479
Query: 439 EEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQV 498
EEAP+KEKIHIEV SKR+G KESLG+VDI+L DV+HNG + +KY+LI SK+G + V
Sbjct: 480 EEAPVKEKIHIEVMSKRKGFGFSFKESLGHVDIDLIDVVHNGHINKKYNLIRSKHGVIHV 539
Query: 499 EIKWKA 504
++WK
Sbjct: 540 GLRWKV 545
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225449024|ref|XP_002272997.1| PREDICTED: extended synaptotagmin-2 [Vitis vinifera] gi|296086005|emb|CBI31446.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/545 (62%), Positives = 424/545 (77%), Gaps = 41/545 (7%)
Query: 1 MGLLSFLLGIFGFGIGIPIGFLIAFFIFVHSDATEITDPIIRPNDHEFDTSSVLDVFPEI 60
MG LS LL I GFGIGIP G L+ FF+FV+S ++ DP +RP E D+S+++D+ PE+
Sbjct: 1 MGFLSSLLDIVGFGIGIPFGLLVGFFLFVYSQPKDVQDPDVRPLS-ELDSSTLMDLLPEL 59
Query: 61 PLWVKHPDYDRIDWLNKFVSDLWPYLDKAICSTARSNLEPIFAEYIGKYCIRSVDFKTLT 120
P WVK+P+YDR+DWLNKF+ ++WPYLDKAIC T RS +PIFAEYIG Y I +++F+ L+
Sbjct: 60 PFWVKNPNYDRVDWLNKFILNMWPYLDKAICDTIRSMAQPIFAEYIGMYQIEAIEFEKLS 119
Query: 121 LGTLPPIIHGIKVCETNENELILEPALRWAGNPNITLALKFFSLQITVQLLDVQIRAAPR 180
LGTLPPI+HGIKV ETNE EL +EPA++WAGNPNI L LK+ +IT+QL+D+QI AAPR
Sbjct: 120 LGTLPPILHGIKVYETNEKELAMEPAIKWAGNPNIILVLKWLPFRITIQLVDLQIFAAPR 179
Query: 181 IVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLVGGDMMAIPGLYQFIQETIRNQISALYL 240
I LKPLVP FPCFA + +SLMEKP VDFGLK++GGD+M+IPGLY+F+QETI+ +++ LYL
Sbjct: 180 ITLKPLVPTFPCFASLVLSLMEKPHVDFGLKILGGDIMSIPGLYRFVQETIKREVAKLYL 239
Query: 241 WPQPLEIPILDGSLGAIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKK 300
WPQ LEIPILD + GAIKKPVGILHVKV+RA++LLKMD GASDPYV+LSLSGER+PAKK
Sbjct: 240 WPQTLEIPILDAATGAIKKPVGILHVKVVRALKLLKMDFLGASDPYVKLSLSGERLPAKK 299
Query: 301 TSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETK 360
T+VK K LNPEWNE FKL V+DP+ QVLQL+VYDW+KVG HDKLGMQ+VPL+ LTP+ET+
Sbjct: 300 TTVKRKNLNPEWNEKFKLIVRDPQAQVLQLYVYDWDKVGAHDKLGMQLVPLKLLTPHETQ 359
Query: 361 ELTLDLVKNTNPNDPQDKK--------------------------FERKESEVGKATE-- 392
E TLDL KNTN +DPQ K+ + RKES + +A++
Sbjct: 360 EFTLDLFKNTNLSDPQQKQRGKIVVELTFDPFKEDHECYSGPLDGYGRKESRISRASDDD 419
Query: 393 ------------YGAKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEE 440
GA+D+EG+ HNNPYAV++ RGE+KKTKM+KK RDP WNEEFQF EE
Sbjct: 420 TPSGAGLLLVTIQGAEDVEGQRHNNPYAVILFRGEKKKTKMMKKTRDPQWNEEFQFMLEE 479
Query: 441 APLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEI 500
PL EKIHI+V S+R G+ RSKES+G+VDI+L DV+HNGR+ KYHLINSKNG + +EI
Sbjct: 480 PPLSEKIHIQVISQRSGIGFRSKESMGHVDIDLTDVVHNGRINHKYHLINSKNGQIHLEI 539
Query: 501 KWKAI 505
KWK I
Sbjct: 540 KWKMI 544
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297741612|emb|CBI32744.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/547 (63%), Positives = 421/547 (76%), Gaps = 44/547 (8%)
Query: 1 MGLLSFLLGIFGFGIGIPIGFLIAFFIFVHSDATEITDPIIRPNDHEFDTSSVLDVFPEI 60
MG +S LLGI GFG+GIP G ++ +FIF+H++ ++ PIIRP H+ D+ S+LD+ E+
Sbjct: 1 MGFVSALLGIIGFGVGIPFGLVLGYFIFIHNEPQDVKVPIIRPL-HDLDSDSLLDLLDEM 59
Query: 61 PLWVKHPDYDRIDWLNKFVSDLWPYLDKAICSTARSNLEPIFAEYIGKYCIRSVDFKTLT 120
PLWVK PDYDR DWLNKF+ D+WPYLDKAIC RS EPIFAEYIGK+ I+S+DF+TL+
Sbjct: 60 PLWVKTPDYDRADWLNKFIFDMWPYLDKAICGIIRSTTEPIFAEYIGKFQIKSIDFETLS 119
Query: 121 LGTLPPIIHG-IKVCETNE-NELILEPALRWAGNPNITLALKFFSLQITVQLLDVQIRAA 178
LGTL PI+HG +TNE NELILEPA+RWAGNPNI L LK SL+IT+QL D+QI
Sbjct: 120 LGTLSPIVHGKYSSIKTNEVNELILEPAIRWAGNPNIILVLKLLSLRITLQLTDLQISMV 179
Query: 179 PRIVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLVGGDMMAIPGLYQFIQETIRNQISAL 238
PRIVLKPLVP FPCFA + VSLMEKP VDFGLKL+GGD+MAIPGLYQFIQ+TIR Q+++L
Sbjct: 180 PRIVLKPLVPTFPCFASVVVSLMEKPHVDFGLKLLGGDIMAIPGLYQFIQKTIRRQVASL 239
Query: 239 YLWPQPLEIPILDGSLGAIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPA 298
YLWPQ LE+PILD + IKKPVG+LHVKV+RA +LLKMDI GASDPYV+LSLSGER+PA
Sbjct: 240 YLWPQTLEMPILDALVAPIKKPVGLLHVKVVRARKLLKMDILGASDPYVKLSLSGERLPA 299
Query: 299 KKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNE 358
KKTS+KMKTL+PEWNEDFKL VKDP++QVLQLHVYDWEKVG HDKLGMQVVPLR LTPN
Sbjct: 300 KKTSIKMKTLDPEWNEDFKLIVKDPKSQVLQLHVYDWEKVGMHDKLGMQVVPLRLLTPNM 359
Query: 359 TKELTLDLVKNTNPNDPQDKKFE---------------------------RKESEVGKAT 391
TK+ TLDL+KNTNPNDP +KK+ R +S +AT
Sbjct: 360 TKQFTLDLLKNTNPNDPHNKKYRGKIVVEMTFNPFKEDSERFSGLLNEHMRNDSGGERAT 419
Query: 392 E--------------YGAKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFD 437
E GA+ +EGKHHNNPYA+++ +GE+K TK+IKK RDP WNEEF+F
Sbjct: 420 EDVPSSGAGLLLVVIQGAEHVEGKHHNNPYAIILFKGERKNTKLIKKTRDPCWNEEFEFM 479
Query: 438 FEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQ 497
EEAP+KEKIHIEV SKR+G KESLG+VDI+L DV+HNG + +KY+LI SK+G +
Sbjct: 480 LEEAPVKEKIHIEVMSKRKGFGFSFKESLGHVDIDLIDVVHNGHINKKYNLIRSKHGVIH 539
Query: 498 VEIKWKA 504
V ++WK
Sbjct: 540 VGLRWKV 546
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224097856|ref|XP_002311084.1| predicted protein [Populus trichocarpa] gi|222850904|gb|EEE88451.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/548 (58%), Positives = 417/548 (76%), Gaps = 44/548 (8%)
Query: 1 MGLLSFLLGIFGFGIGIPIGFLIAFFIFVHSDATE-ITDPIIRPNDHEFDTSSVLDVFPE 59
MG L+ L+ + GFGIG+P G LI FF+FV+S + + DP++RP HE DT ++LD+ P+
Sbjct: 1 MGFLNTLVELLGFGIGLPFGLLIGFFLFVYSKPKDTVKDPVVRPL-HELDTGALLDILPD 59
Query: 60 IPLWVKHPDYDRIDWLNKFVSDLWPYLDKAICSTARSNLEPIFAEYIGKYCIRSVDFKTL 119
IPLWVK PDY+R+DWLNKF+SD+WPYLDKA+C+ R + +FAEYIGKY I++++F+ L
Sbjct: 60 IPLWVKCPDYERVDWLNKFLSDMWPYLDKAVCAMIRRTTQSMFAEYIGKYKIQAIEFEHL 119
Query: 120 TLGTLPPIIHGIKVCETNENELILEPALRWAGNPNITLALKFFSLQITVQLLDVQIRAAP 179
TLGTLPP IHG+KV ETNE +L++EPA+RWAGNPNI L LK SLQ+TVQL+D+QI AAP
Sbjct: 120 TLGTLPPTIHGLKVYETNEKDLVMEPAIRWAGNPNIVLVLKLMSLQVTVQLVDLQIFAAP 179
Query: 180 RIVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLVGGDMMAIPGLYQFIQETIRNQISALY 239
R+ LKPLVP FPCFA I VSLME+P VDFGLK++GGD+M+IPGLY+F+QE I+ Q+++LY
Sbjct: 180 RVALKPLVPTFPCFANILVSLMERPHVDFGLKILGGDVMSIPGLYRFVQEMIKKQVASLY 239
Query: 240 LWPQPLEIPILDGSLGAIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAK 299
LWPQ L+IPILD S IKKPVGILHVKV+RA +LLK D+ G SDPYV+L+L+GE++PAK
Sbjct: 240 LWPQTLDIPILDSSTVIIKKPVGILHVKVVRAKKLLKADLLGTSDPYVKLNLTGEKLPAK 299
Query: 300 KTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNET 359
KT++K K LNPEWNE+FKL VKDPE+Q LQL V+DW+KVG HD+LGMQ+VPL+ LTP ET
Sbjct: 300 KTTIKKKNLNPEWNENFKLVVKDPESQALQLQVFDWDKVGGHDRLGMQLVPLKVLTPRET 359
Query: 360 KELTLDLVKNTNPNDPQDKKFE------------RKES-----------EVGKATE---- 392
K+ TLDL+K+TN +D +DKK R++S E+G +
Sbjct: 360 KDFTLDLLKHTNISDSRDKKQRGQIVVELTYVPFREDSIKFSGPLDGNGEMGSVSGRSTP 419
Query: 393 ---------------YGAKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFD 437
GA+D+EGK H+NPYA+V+ RGE+K+TK IKK RDP WNEEFQF
Sbjct: 420 EEAPLSGAGLLSVMVQGAEDVEGKRHHNPYALVLFRGERKRTKTIKKTRDPRWNEEFQFT 479
Query: 438 FEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQ 497
++ PL E I IEV SKR+ RSKESLG+V+INL DV++NGR+ +KYHLI+S+NG +
Sbjct: 480 LDQPPLHELIRIEVMSKRKSFSFRSKESLGHVEINLDDVVYNGRINQKYHLIDSRNGVIH 539
Query: 498 VEIKWKAI 505
VEI+W +
Sbjct: 540 VEIRWSTV 547
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255588268|ref|XP_002534553.1| calcium lipid binding protein, putative [Ricinus communis] gi|223525050|gb|EEF27829.1| calcium lipid binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/542 (60%), Positives = 420/542 (77%), Gaps = 38/542 (7%)
Query: 1 MGLLSFLLGIFGFGIGIPIGFLIAFFIFVHS--DATEITDPIIRPNDHEFDTSSVLDVFP 58
MG LS +LG GFG G+PIG L+ FF+FV+S + ++ DP++RP HE D+S++ D+ P
Sbjct: 1 MGFLSTVLGFLGFGFGLPIGLLLGFFLFVYSQPEHHDVKDPVVRPL-HELDSSTLEDILP 59
Query: 59 EIPLWVKHPDYDRIDWLNKFVSDLWPYLDKAICSTARSNLEPIFAEYIGKYCIRSVDFKT 118
EIPLWVK PDY+R+DWLNK + D+WPYLDKAICST RS EPIFAEYIG+Y I +++F+
Sbjct: 60 EIPLWVKCPDYERVDWLNKLLLDMWPYLDKAICSTIRSTAEPIFAEYIGQYMIEAIEFEH 119
Query: 119 LTLGTLPPIIHGIKVCETNENELILEPALRWAGNPNITLALKFFSLQITVQLLDVQIRAA 178
LTLGTLPP+IHG+KV ETNE +L++EPA++WAGNPNI L +K SL + VQL+D+QI AA
Sbjct: 120 LTLGTLPPVIHGLKVYETNEKDLVMEPAIKWAGNPNIILMIKLMSLPVRVQLIDLQIFAA 179
Query: 179 PRIVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLVGGDMMAIPGLYQFIQETIRNQISAL 238
PRI LKPLVP+FPCFA I VSLME+P VDFGLK++GGD+M+IPGLY+ +QETI+ Q++ L
Sbjct: 180 PRIALKPLVPSFPCFANIVVSLMERPHVDFGLKVLGGDLMSIPGLYRLVQETIKKQVARL 239
Query: 239 YLWPQPLEIPILDGSLGAIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPA 298
YLWPQ L+IP+LD S AIKKPVGILHVKV+RA++LLK D+ G SDPYV+LSL+GE++PA
Sbjct: 240 YLWPQFLDIPVLDSSTVAIKKPVGILHVKVVRAMKLLKADLLGTSDPYVKLSLTGEKLPA 299
Query: 299 KKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNE 358
KKT+VK K LNPEWNE+FKL VKDP++QVLQL V+DW+KVG HD+LGMQVVPL+ LTP E
Sbjct: 300 KKTTVKKKNLNPEWNENFKLIVKDPQSQVLQLQVFDWDKVGGHDRLGMQVVPLKVLTPGE 359
Query: 359 TKELTLDLVKNTNPNDPQDKK----------FERKESEVGKATE---------------- 392
KE LDL+K+TN +DPQDKK F + + K TE
Sbjct: 360 AKEFILDLLKHTNISDPQDKKRRGQIVVELTFVPFKQDSAKFTEPVDGGSEKSSDEEKLS 419
Query: 393 ---------YGAKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPL 443
GA+D+EG+HH+NPYA+V+ RGE+KKTKMI+K RDP WNEEFQF ++ PL
Sbjct: 420 GAGLLSVIVQGAEDVEGEHHSNPYALVLFRGEKKKTKMIRKTRDPHWNEEFQFTLDQPPL 479
Query: 444 KEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWK 503
+EK+HI+V SKR SKESLG+V+INL DV+HNGR+ EKYHLINSK+G + +EI+W
Sbjct: 480 REKMHIDVMSKRTRFSFLSKESLGHVEINLDDVVHNGRINEKYHLINSKHGLIHLEIRWD 539
Query: 504 AI 505
+
Sbjct: 540 TV 541
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224113059|ref|XP_002316376.1| predicted protein [Populus trichocarpa] gi|222865416|gb|EEF02547.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/547 (58%), Positives = 401/547 (73%), Gaps = 45/547 (8%)
Query: 1 MGLLSFLLGIFGFGIGIPIGFLIAFFIFVHSDATEITDPIIRPNDHEFDTSSVLDVFPEI 60
MG L+ L GFGIG+P G LI FF+FV+S ++ DP++RP HE DT ++LD+ P+I
Sbjct: 1 MGFLNAFLEFLGFGIGLPFGLLIGFFLFVYSKPKDVKDPVVRPL-HELDTDALLDILPDI 59
Query: 61 PLWVKHPDYDRIDWLNKFVSDLWPYLDKAICSTARSNLEPIFAEYIGKYCIRSVDFKTLT 120
PLWVK PDY+R+DWLNKF+ D+WPYLDKAIC+ RS +P+FAEYIGKY I +++F+ LT
Sbjct: 60 PLWVKCPDYERVDWLNKFLLDMWPYLDKAICAMIRSTTKPMFAEYIGKYKIEAIEFEHLT 119
Query: 121 LGTLPPIIHGIKVCETNENELILEPALRWAGNPNITLALKFFSLQITVQLLDVQIRAAPR 180
LGTLPPII G+KV ET E +L++EPA+RWAGNPNI L L+ S+++ QL+D+QI AAPR
Sbjct: 120 LGTLPPIIQGLKVYETMEKDLVMEPAIRWAGNPNIVLVLQLLSVRLRFQLVDLQIFAAPR 179
Query: 181 IVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLVGGDMMAIPGLYQFIQETIRNQISALYL 240
+ LKPLVP FPCFA I VSLME+P VDFGLK++GGD+M+IPGLY+ + I+ Q+++LYL
Sbjct: 180 VALKPLVPTFPCFANIVVSLMERPHVDFGLKILGGDVMSIPGLYRL--DMIKKQVASLYL 237
Query: 241 WPQPLEIPILDGSLGAIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKK 300
WPQ L+IP++D S IKKPVGILHVKV+RA +LLK DI G SDPYV+L L+GE++PAKK
Sbjct: 238 WPQTLDIPVIDASTMVIKKPVGILHVKVVRAKKLLKADILGTSDPYVKLCLTGEKLPAKK 297
Query: 301 TSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETK 360
T++K K LNPEWNE+FKL VKDPE+Q LQL V+DW+KVG HD+LGMQ VPL+ LTP ETK
Sbjct: 298 TTIKKKNLNPEWNENFKLVVKDPESQALQLQVFDWDKVGGHDRLGMQFVPLKVLTPRETK 357
Query: 361 ELTLDLVKNTNPNDPQDKK-------------FERKESEVGKATE--------------- 392
E TLDL+K+TN +D QDKK F E +
Sbjct: 358 EFTLDLLKHTNISDSQDKKQRGQIVLELTYVPFREDSIEFSGPLDGNDRRGSASGRSSSG 417
Query: 393 --------------YGAKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDF 438
GA+D+EGKHH NPYA+V RGE+K+TKMIKK RDP WNEEFQF
Sbjct: 418 DESLSGAGLLSVIVQGAEDVEGKHHINPYALVHFRGERKRTKMIKKTRDPRWNEEFQFTL 477
Query: 439 EEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQV 498
++ PL E I IEV SKR RSKESLG+V+INL DV+HNGR+ +KYHLI+SKNG + V
Sbjct: 478 DQPPLHELIRIEVMSKRTSFSFRSKESLGHVEINLDDVVHNGRINQKYHLIDSKNGVIHV 537
Query: 499 EIKWKAI 505
EI+W +
Sbjct: 538 EIRWSTV 544
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464400|ref|XP_004149917.1| PREDICTED: synaptotagmin-3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/546 (59%), Positives = 408/546 (74%), Gaps = 45/546 (8%)
Query: 1 MGLLSFLLGIFGFGIGIPIGFLIAFFIFVHSDATEITDPIIRPNDHEFDTSSVLDVFPEI 60
MG S L+GI GFGIGIP+G ++ FF F++S E+ DP+IRP +E D+ S+ +V PEI
Sbjct: 1 MGFFSILMGIVGFGIGIPLGLVVGFFFFIYSKPDEVKDPMIRP-IYELDSDSLEEVIPEI 59
Query: 61 PLWVKHPDYDRIDWLNKFVSDLWPYLDKAICSTARSNLEPIFAEYIGKYCIRSVDFKTLT 120
PLWVKHPD+DR+DWLNKF+ +WP LDKAICS+ R EP+FAEYIGK+ I+S++F+TL
Sbjct: 60 PLWVKHPDFDRVDWLNKFLEGMWPCLDKAICSSIRGMAEPMFAEYIGKFQIQSIEFETLL 119
Query: 121 LGTLPPIIHGIKVCETNENELILEPALRWAGNPNITLALKFFSLQITVQLLDVQIRAAPR 180
LGTL P ++GIKV ETNENE+++E A++WAGNPNI L L+ FSLQI +QL+D+QI AAPR
Sbjct: 120 LGTLSPKLYGIKVHETNENEIVMETAIKWAGNPNIVLILRLFSLQIRIQLVDLQIFAAPR 179
Query: 181 IVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLVGGDMMAIPGLYQFIQETIRNQISALYL 240
+ LKPLVPAFPCF I VSL+EKP VDFG+K++GGD+M+IPGLYQF+QETIR Q+S LYL
Sbjct: 180 VALKPLVPAFPCFTNIVVSLLEKPHVDFGMKILGGDIMSIPGLYQFVQETIRKQVSNLYL 239
Query: 241 WPQPLEIPILDGSLGAIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKK 300
WP LEIPILD S+ A K+PVGILHV V++A++L KMD+ G SDPYV+LSLSGER+P+KK
Sbjct: 240 WPHVLEIPILDASVAATKRPVGILHVNVVKALKLSKMDLLGTSDPYVKLSLSGERLPSKK 299
Query: 301 TSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETK 360
T+VKM LNP WNE FKL VKDPE+QVLQL VYDW+KVG HD+LGMQ+VPL+ LTP ETK
Sbjct: 300 TTVKMNNLNPIWNEKFKLIVKDPESQVLQLQVYDWDKVGGHDRLGMQLVPLKVLTPYETK 359
Query: 361 ELTLDLVKNTNP--NDPQDKK-------------FERKESEVGKATE------------- 392
ELTLDL+KNTN N+ Q+KK F + S+ +
Sbjct: 360 ELTLDLLKNTNTNINEYQNKKPRGQLVVELKFTPFREESSKFSSQLDGCGSMVSRDERDL 419
Query: 393 ---------------YGAKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFD 437
GA +EGK H+NPYAV+ RGE+KKTKM+KKCRDP+WNE+F+F
Sbjct: 420 QDDCVGGAGLLSVKIQGATSVEGKRHSNPYAVMHFRGEKKKTKMVKKCRDPVWNEDFEFM 479
Query: 438 FEEAPLKEKIHIEV-KSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAV 496
EE PL EKIHIEV + SKESLG+V+INL DV+HNGR+ KYHLINS++G +
Sbjct: 480 LEEPPLGEKIHIEVRSRRSSRFSFFSKESLGHVEINLGDVVHNGRINTKYHLINSRHGMI 539
Query: 497 QVEIKW 502
V+IKW
Sbjct: 540 HVQIKW 545
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449527095|ref|XP_004170548.1| PREDICTED: synaptotagmin-3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/546 (59%), Positives = 408/546 (74%), Gaps = 45/546 (8%)
Query: 1 MGLLSFLLGIFGFGIGIPIGFLIAFFIFVHSDATEITDPIIRPNDHEFDTSSVLDVFPEI 60
MG S L+GI GFGIGIP+G ++ FF F++S E+ DP+IRP +E D+ S+ +V PEI
Sbjct: 1 MGFFSILMGIVGFGIGIPLGLVVGFFFFIYSKPDEVKDPMIRP-IYELDSDSLEEVIPEI 59
Query: 61 PLWVKHPDYDRIDWLNKFVSDLWPYLDKAICSTARSNLEPIFAEYIGKYCIRSVDFKTLT 120
PLWVKHPD+DR+DWLNKF+ +WP LDKAICS+ R EP+FAEYIGK+ I+S++F+TL
Sbjct: 60 PLWVKHPDFDRVDWLNKFLEGMWPCLDKAICSSIRGMAEPMFAEYIGKFQIQSIEFETLL 119
Query: 121 LGTLPPIIHGIKVCETNENELILEPALRWAGNPNITLALKFFSLQITVQLLDVQIRAAPR 180
LGTL P ++GIKV ETNENE+++E A++WAGNPNI L L+ FSL+I +QL+D+QI AAPR
Sbjct: 120 LGTLSPKLYGIKVHETNENEIVMETAIKWAGNPNIVLILRLFSLRIRIQLVDLQIFAAPR 179
Query: 181 IVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLVGGDMMAIPGLYQFIQETIRNQISALYL 240
+ LKPLVPAFPCF I VSL+EKP VDFG+K++GGD+M+IPGLYQF+QETIR Q+S LYL
Sbjct: 180 VALKPLVPAFPCFTNIVVSLLEKPHVDFGMKILGGDIMSIPGLYQFVQETIRKQVSNLYL 239
Query: 241 WPQPLEIPILDGSLGAIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKK 300
WP LEIPILD S+ A K+PVGILHV V++A++L KMD+ G SDPYV+LSLSGER+P+KK
Sbjct: 240 WPHVLEIPILDASVAATKRPVGILHVNVVKALKLSKMDLLGTSDPYVKLSLSGERLPSKK 299
Query: 301 TSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETK 360
T+VKM LNP WNE FKL VKDPE+QVLQL VYDW+KVG HD+LGMQ+VPL+ LTP ETK
Sbjct: 300 TTVKMNNLNPIWNEKFKLIVKDPESQVLQLQVYDWDKVGGHDRLGMQLVPLKVLTPYETK 359
Query: 361 ELTLDLVKNTNP--NDPQDKK-------------FERKESEVGKATE------------- 392
ELTLDL+KNTN N+ Q+KK F + S+ +
Sbjct: 360 ELTLDLLKNTNTNINEYQNKKPRGQLVVELKFTPFREESSKFSSQLDGCGSMVSRDERDL 419
Query: 393 ---------------YGAKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFD 437
GA +EGK H+NPYAV+ RGE+KKTKM+KKCRDP+WNE+F+F
Sbjct: 420 QDDFVGGAGLLSVKIQGATSVEGKRHSNPYAVMHFRGEKKKTKMVKKCRDPVWNEDFEFM 479
Query: 438 FEEAPLKEKIHIEV-KSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAV 496
EE PL EKIHIEV + SKESLG+V+INL DV+HNGR+ KYHLINS++G +
Sbjct: 480 LEEPPLGEKIHIEVRSRRSSRFSFFSKESLGHVEINLGDVVHNGRINTKYHLINSRHGMI 539
Query: 497 QVEIKW 502
V+IKW
Sbjct: 540 HVQIKW 545
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356535625|ref|XP_003536345.1| PREDICTED: tricalbin-2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/546 (57%), Positives = 402/546 (73%), Gaps = 42/546 (7%)
Query: 1 MGLLSFLLGIFGFGIGIPIGFLIAFFIFVHSDATEITDPIIRPNDHEFDTSSVLDVFPEI 60
MG LS LG+FGF +GIP+G L+ FF+FV+S+ + DP++RP E +S+ ++ PEI
Sbjct: 1 MGFLSSFLGVFGFAVGIPLGLLVGFFLFVYSETKRVKDPVVRPIS-ELGPNSLQELLPEI 59
Query: 61 PLWVKHPDYDRIDWLNKFVSDLWPYLDKAICSTARSNLEPIFAEYIGKYCIRSVDFKTLT 120
PLWVK PDY+R+DWLNKF+ D+WP+LD AIC RS +PIFAEYIGKY I+++DF L+
Sbjct: 60 PLWVKTPDYERVDWLNKFLLDMWPFLDTAICKIIRSTTQPIFAEYIGKYQIKAIDFDELS 119
Query: 121 LGTLPPIIHGIKVCETNENELILEPALRWAGNPNITLALKFFSLQITVQLLDVQIRAAPR 180
LGTLPP + G+KV ETNE EL++E ++WAGNPNI ++L SL+IT+QL+D+QI AAPR
Sbjct: 120 LGTLPPTVCGMKVLETNEKELVMEQVIKWAGNPNIVVSLYVSSLKITIQLVDLQIFAAPR 179
Query: 181 IVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLVGGDMMAIPGLYQFIQETIRNQISALYL 240
I L+PLVP FPCFA I VSLMEKP VDFG+ + GGD+M+IPGLY+F+QETI+ Q++ LYL
Sbjct: 180 ITLRPLVPTFPCFANIVVSLMEKPHVDFGMNVSGGDIMSIPGLYRFVQETIKKQVANLYL 239
Query: 241 WPQPLEIPILDGSLGAIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKK 300
WPQ LEIPILD S AIKKPVGILHV V+RA +LLKMD+ G SDPYV+LSL+G+++PAKK
Sbjct: 240 WPQTLEIPILDESTVAIKKPVGILHVNVVRAQKLLKMDLLGTSDPYVKLSLTGDKLPAKK 299
Query: 301 TSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETK 360
T+VK K LNPEWNE FK+ VKDP++QVLQL VYDW+KVG HDKLGMQ+VPL+ L P E K
Sbjct: 300 TTVKRKNLNPEWNEKFKIVVKDPQSQVLQLQVYDWDKVGGHDKLGMQLVPLKVLNPYENK 359
Query: 361 ELTLDLVKNTNPNDPQDKK---------------------------FERKESEVGKATE- 392
E LDL+K+TN N+ KK + RKES + ++
Sbjct: 360 EFILDLLKDTNLNETPHKKPRGKIVVDLTFVPFKEDSNKFGGPSEGYSRKESGIDIVSDD 419
Query: 393 -------------YGAKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFE 439
A+++EG HHNNP+AV+ RGE+K+TK +KK R P WNEEFQF E
Sbjct: 420 EVQEGAGLLSIVIQEAEEVEGDHHNNPFAVLTFRGEKKRTKTMKKTRHPRWNEEFQFMLE 479
Query: 440 EAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVE 499
E PL EKIHIEV SKR+ KESLG+V+INL DV+HNGR+ +KYHLINS+NG + VE
Sbjct: 480 EPPLHEKIHIEVMSKRKNFSFLPKESLGHVEINLRDVVHNGRINDKYHLINSRNGVMHVE 539
Query: 500 IKWKAI 505
I+WK +
Sbjct: 540 IRWKVV 545
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 505 | ||||||
| TAIR|locus:2146688 | 540 | SYTC "AT5G04220" [Arabidopsis | 0.706 | 0.661 | 0.588 | 2.2e-121 | |
| TAIR|locus:2198581 | 537 | SYTB "AT1G20080" [Arabidopsis | 0.691 | 0.649 | 0.569 | 1.4e-112 | |
| TAIR|locus:2201036 | 560 | NTMC2T2.1 "AT1G05500" [Arabido | 0.615 | 0.555 | 0.368 | 6.1e-66 | |
| TAIR|locus:2184931 | 569 | SYTD "AT5G11100" [Arabidopsis | 0.609 | 0.541 | 0.364 | 6.9e-61 | |
| TAIR|locus:2047027 | 256 | AT2G21010 "AT2G21010" [Arabido | 0.219 | 0.433 | 0.464 | 1.5e-54 | |
| TAIR|locus:2100992 | 510 | NTMC2T4 [Arabidopsis thaliana | 0.621 | 0.615 | 0.348 | 4e-51 | |
| WB|WBGene00020443 | 713 | esyt-2 [Caenorhabditis elegans | 0.560 | 0.396 | 0.305 | 7.4e-36 | |
| FB|FBgn0039208 | 849 | Esyt2 [Drosophila melanogaster | 0.609 | 0.362 | 0.291 | 1.7e-35 | |
| MGI|MGI:1098699 | 891 | Esyt3 "extended synaptotagmin- | 0.566 | 0.320 | 0.266 | 1.4e-26 | |
| UNIPROTKB|A0FGR9 | 886 | ESYT3 "Extended synaptotagmin- | 0.594 | 0.338 | 0.259 | 7.8e-26 |
| TAIR|locus:2146688 SYTC "AT5G04220" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1194 (425.4 bits), Expect = 2.2e-121, P = 2.2e-121
Identities = 212/360 (58%), Positives = 282/360 (78%)
Query: 29 VHSDATEITDPIIRPNDHEFDTSSVLDVFPEIPLWVKHPDYDRIDWLNKFVSDLWPYLDK 88
++S + P RP E S +LD+ P+IPLW+K+PDY+R+DW NKF+S +WPYLDK
Sbjct: 29 IYSQPSHQEYPPARPLV-ETSISVLLDLLPDIPLWMKNPDYERVDWFNKFISYMWPYLDK 87
Query: 89 AICSTARSNLEPIFAEYIGKYCIRSVDFKTLTLGTLPPIIHGIKVCETNENELILEPALR 148
A+C RS+++P+FA+YIG +CI S++F+ L+LGTLPP +HG+K ETNE EL+ EP+++
Sbjct: 88 AVCGIIRSSVQPLFADYIGTFCIESIEFENLSLGTLPPTVHGVKFYETNEKELLFEPSIK 147
Query: 149 WAGNPNITLALKFFSLQITVQLLDVQIRAAPRIVLKPLVPAFPCFAGIAVSLMEKPEVDF 208
WAGNPNI L LK SL+I VQL+D+Q A R+ LKPL+P FPCF + VSLMEKP VDF
Sbjct: 148 WAGNPNIVLVLKVLSLRIRVQLVDLQFFAIVRVALKPLLPTFPCFGMVVVSLMEKPHVDF 207
Query: 209 GLKLVGGDMMAIPGLYQFIQETIRNQISALYLWPQPLEIPILDGSLGAIKKPVGILHVKV 268
GLK++GGD+M+IPGLY+++QETI+ Q+S++Y WPQ LEIPILD S ++KKPVG+LHV +
Sbjct: 208 GLKVLGGDLMSIPGLYRYVQETIKRQVSSMYHWPQVLEIPILDSSTASVKKPVGLLHVSI 267
Query: 269 IRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVL 328
+RA LLK D+ G SDPYV+LSL+GE++PAKKT++K + LNPEWNE FKL VKDP +QVL
Sbjct: 268 LRARNLLKKDLLGTSDPYVKLSLTGEKLPAKKTTIKKRNLNPEWNEHFKLIVKDPNSQVL 327
Query: 329 QLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNP-NDPQDKKFERKESEV 387
QL V+DW+KVG HD+LGMQ++PL+ + P E KE LDL+KN+N D DKK +R EV
Sbjct: 328 QLEVFDWDKVGGHDRLGMQMIPLQKINPGERKEFNLDLIKNSNVVMDSGDKK-KRGRLEV 386
|
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| TAIR|locus:2198581 SYTB "AT1G20080" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1111 (396.2 bits), Expect = 1.4e-112, P = 1.4e-112
Identities = 200/351 (56%), Positives = 273/351 (77%)
Query: 29 VHSDATEITDPIIRPNDHEFDTSSVLDVFPEIPLWVKHPDYDRIDWLNKFVSDLWPYLDK 88
++ +T++ DP I+P E D+ ++ +FPEIP+WVK+PD+DRIDWLNK + +WPY+DK
Sbjct: 29 IYFQSTDVEDPEIKPLV-ELDSETIATMFPEIPMWVKNPDFDRIDWLNKLIGHMWPYMDK 87
Query: 89 AICSTARSNLEPIFAEYIGKYCIRSVDFKTLTLGTLPPIIHGIKVCETNENELILEPALR 148
AIC A+S +PI AE I Y I SV+F+ LTLG+LPP G+KV T++ E+I+E +++
Sbjct: 88 AICKMAKSIAKPIIAEQIPNYKIDSVEFEMLTLGSLPPSFQGMKVYATDDKEIIMELSVK 147
Query: 149 WAGNPNITLALKFFSLQITVQLLDVQIRAAPRIVLKPLVPAFPCFAGIAVSLMEKPEVDF 208
WAGNPNI + K F L+ TVQ++D+Q+ A PRI LKPLVP+FPCFA I VSLM+KP+VDF
Sbjct: 148 WAGNPNIIVVAKAFGLKATVQVIDLQVYATPRITLKPLVPSFPCFANIFVSLMDKPQVDF 207
Query: 209 GLKLVGGDMMAIPGLYQFIQETIRNQISALYLWPQPLEIPILDGSLGAIKKPVGILHVKV 268
GLKL+G D+MAIPGLY+F+QE I++Q++ +YLWP+ L + I+D S A+KKPVG+L VKV
Sbjct: 208 GLKLLGADVMAIPGLYRFVQEIIKDQVANMYLWPKTLNVQIMDPSK-AMKKPVGLLSVKV 266
Query: 269 IRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVL 328
I+AI+L K D+ G SDPYV+L+LSG+++P KKT VK LNPEWNE+F L VK+PE+Q L
Sbjct: 267 IKAIKLKKKDLLGGSDPYVKLTLSGDKVPGKKTVVKHSNLNPEWNEEFDLVVKEPESQEL 326
Query: 329 QLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNPNDPQDKK 379
QL VYDWE+VG HDK+GM V+ L+ LTP E K +TL+L+K+ P +P +K
Sbjct: 327 QLIVYDWEQVGKHDKIGMNVIQLKDLTPEEPKLMTLELLKSMEPKEPVSEK 377
|
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| TAIR|locus:2201036 NTMC2T2.1 "AT1G05500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 579 (208.9 bits), Expect = 6.1e-66, Sum P(2) = 6.1e-66
Identities = 116/315 (36%), Positives = 185/315 (58%)
Query: 58 PEI-PLWVKHPDYDRIDWLNKFVSDLWPYLDKAICSTARSNLEPIFAEYIGKYCIRSVDF 116
PE P WV + ++ WLN ++ +WPY+D+A ++++EP+ +Y + S+ F
Sbjct: 56 PEFYPSWVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQY-RPAIVASLTF 114
Query: 117 KTLTLGTLPPIIHGIKVCETNENELILEPALRWAGNPNITLALK-FFSLQITVQLLDVQI 175
LTLGT+ P G+ V + ++N + LE ++W GNPNI L +K + + +Q+ ++
Sbjct: 115 SKLTLGTVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVLGVKTLVGVSLPIQVKNIGF 174
Query: 176 RAAPRIVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLVGGDMMAIPGLYQFIQETIRNQI 235
R++ +PLV FPCF ++VSL EK ++DF LK+VGGD+ AIPGL + I+ETIR+ +
Sbjct: 175 TGVFRLIFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAIPGLSEAIEETIRDAV 234
Query: 236 SALYLWPQPLEIPILDGSLGAIK-KPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE 294
WP IPI+ G ++ KPVG+L VK+++A L D+ G SDP+ ++ +
Sbjct: 235 EDSITWPVRKVIPIIPGDYSDLELKPVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPL 294
Query: 295 RIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSL 354
R K++ LNP WNE F+ V+D TQ L + +YD E V + +G + L L
Sbjct: 295 REKTKRSKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQASELIGCAQIRLCEL 354
Query: 355 TPNETKELTLDLVKN 369
P + K++ L LVK+
Sbjct: 355 EPGKVKDVWLKLVKD 369
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| TAIR|locus:2184931 SYTD "AT5G11100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 548 (198.0 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
Identities = 114/313 (36%), Positives = 176/313 (56%)
Query: 61 PLWVKHPDYDRIDWLNKFVSDLWPYLDKAICSTARSNLEPIFAEYIGKYCIRSVDFKTLT 120
P WV +++WLN + +WPY+++A +S++EP+ +Y + S+ F T
Sbjct: 60 PSWVVFSQRQKLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQYTPAM-LASLKFSKFT 118
Query: 121 LGTLPPIIHGIKVCETNE--NELILEPALRWAGNPNITLALK-FFSLQITVQLLDVQIRA 177
LGT+ P G+ + E+ N + +E ++W GNP I L +K + + +++ ++
Sbjct: 119 LGTVAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDVKTLLGVSLPIEVKNIGFTG 178
Query: 178 APRIVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLVGGDMMAIPGLYQFIQETIRNQISA 237
R++ KPLV FPCF ++ SL EK +DF LK++GG++ +IPG+ I+ETIR+ I
Sbjct: 179 VFRLIFKPLVDEFPCFGALSYSLREKKGLDFTLKVIGGELTSIPGISDAIEETIRDAIED 238
Query: 238 LYLWPQPLEIPILDGSLGAIK-KPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERI 296
WP IPIL G ++ KPVG L VKV++A L D+ G SDPY + +
Sbjct: 239 SITWPVRKIIPILPGDYSDLELKPVGKLDVKVVQAKDLANKDMIGKSDPYAIVFIRPLPD 298
Query: 297 PAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTP 356
KKT +LNP WNE F+ V+D TQ L + V+D E VG+ +G VPL L P
Sbjct: 299 RTKKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEGVGSSQLIGAAQVPLNELVP 358
Query: 357 NETKELTLDLVKN 369
+ K++ L LVK+
Sbjct: 359 GKVKDIWLKLVKD 371
|
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| TAIR|locus:2047027 AT2G21010 "AT2G21010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 295 (108.9 bits), Expect = 1.5e-54, Sum P(2) = 1.5e-54
Identities = 52/112 (46%), Positives = 75/112 (66%)
Query: 393 YGAKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVX 452
+ A+D+EGKHH NPY + +GE++KTK +KK +DP WNEEF F EE P+ EK+H+EV
Sbjct: 142 HSAEDVEGKHHTNPYVHIYFKGEERKTKNVKKNKDPKWNEEFSFMLEEPPVHEKLHVEVF 201
Query: 453 XXXXXXXXXX-XXXXXYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWK 503
YVDI + DV++N R+ +K+HLI+SKNG +Q+E+ W+
Sbjct: 202 STSSRIGLLHPKETLGYVDIPVVDVVNNKRMNQKFHLIDSKNGKIQIELDWQ 253
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| TAIR|locus:2100992 NTMC2T4 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 113/324 (34%), Positives = 180/324 (55%)
Query: 61 PLWVKHPDYDRIDWLNKFVSDLWPYLDKAICSTARSNLEPIFAEYIGKYCIRSVDFKTLT 120
P W+ P ++++ WLNK +S +WPY+ +A R ++EP+ +Y I S+ F LT
Sbjct: 59 PQWISFPAFEQVKWLNKLLSKMWPYIAEAATMVIRDSVEPLLEDYRPPG-ITSLKFSKLT 117
Query: 121 LGTLPPIIHGIKVCETNENELILEPALRWAGNPNITLALKFFSLQITVQLLDVQIRAAPR 180
LG + P I GI+V E ++ ++ LRW G+PNI L + I +QL D+Q+ R
Sbjct: 118 LGNVAPKIEGIRVQSFKEGQVTMDVDLRWGGDPNIVLGVTALVASIPIQLKDLQVFTVAR 177
Query: 181 IVLKPLVPAFPCFAGIAVSLME--KPEVDFGLKLVGGDMMAIPGLYQFIQETIRNQISAL 238
++ + L PC + + V+L+ KP +D+ LK VGG + AIPGL I +T+ + +
Sbjct: 178 VIFQ-LADEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGLSDMIDDTVDTIVKDM 236
Query: 239 YLWPQPLEIPI--LDGSLGAIK-KPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER 295
WP + +PI + L ++ KP G L V V++A L ++ G SDPY + +
Sbjct: 237 LQWPHRIVVPIGGIPVDLSDLELKPQGKLIVTVVKATNLKNKELIGKSDPYATIYI--RP 294
Query: 296 IPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLT 355
+ KT LNP W++ F+L +D ETQ L + V+D + VG ++LG+ +PL SL
Sbjct: 295 VFKYKTKAIENNLNPVWDQTFELIAEDKETQSLTVEVFD-KDVGQDERLGLVKLPLSSLE 353
Query: 356 PNETKELTLDLVKNTNPNDPQDKK 379
TKEL L+L+ + + +DKK
Sbjct: 354 AGVTKELELNLLSSLDTLKVKDKK 377
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| WB|WBGene00020443 esyt-2 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 370 (135.3 bits), Expect = 7.4e-36, Sum P(2) = 7.4e-36
Identities = 93/304 (30%), Positives = 165/304 (54%)
Query: 59 EIPLWVKHPDYDRIDWLNKFVSDLWPYLDKAICSTARSNLEP-IFAEYIGKYCIRSVDFK 117
++P WV+ PD +R++WLNK + LWPY+ + + + P + A+ G + ++ F
Sbjct: 74 DLPAWVQFPDTERVEWLNKVIHQLWPYVGEYTKTFMNDFIIPQVKAQMPGMF--KNFKFT 131
Query: 118 TLTLGTLPPIIHGIKVCETN--ENELILEPALRWAGNPNITLALKFFSLQITVQLLDVQI 175
+ +G +P + GIKV TN + +I++ + +AG+ + T++ F T + ++Q
Sbjct: 132 KMDMGDIPCRVGGIKVYTTNVGRDRIIVDMDVAYAGDADFTVSCCGF----TGGMNNIQF 187
Query: 176 RAAPRIVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLVGGDMMAIPGLYQFIQETIRNQI 235
R +LKPL+P P G++ + +E P++DF L +G +M+ +PGL I+ I +QI
Sbjct: 188 SGKLRAILKPLLPYPPMVGGVSGTFLEMPKMDFNLTGMG-EMVELPGLIDAIRSVINSQI 246
Query: 236 SALYLWPQPLEIPI---LDGSLGAIKKPVGILHVKVIRAIRLLKMDI-F---GASDPYVQ 288
+AL + P + +P+ +D + +P G++ +K+I A L DI F G SDPY +
Sbjct: 247 AALCVLPNEIVVPLAPDVDVTQLYFPEPDGVVRLKIIEAKNLENRDISFIKKGKSDPYAE 306
Query: 289 LSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQV 348
+ + + KT LNP WNE F+ V + Q L++ ++D E G ++LG
Sbjct: 307 IQVGSQFF---KTRTIDDDLNPIWNEYFEAVVDQADGQKLRIELFD-EDQGKDEELGRLS 362
Query: 349 VPLR 352
V L+
Sbjct: 363 VDLK 366
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| FB|FBgn0039208 Esyt2 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 355 (130.0 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 96/329 (29%), Positives = 163/329 (49%)
Query: 53 VLDVFPEIPLWVKHPDYDRIDWLNKFVSDLWPYLDKAICSTARSNLEPIFAEYIGKYCIR 112
+L E+P WV PD +R +WLNK + +WP + + + +EP A + Y +
Sbjct: 139 ILARIDELPAWVYFPDVERCEWLNKILKQVWPNANHFARTLVKETIEPNVALALANYKMH 198
Query: 113 SVDFKTLTLGTLPPIIHGIKVCETN--ENELILEPALRWAGNPNITLALKFFSLQITVQL 170
F + LGT+PP I G+K+ + N NE+I++ L +A + +I F+ + +
Sbjct: 199 GFRFDRIILGTIPPRIGGVKIYDKNVDRNEIIMDLDLFYASDCDIN----FYLGGMKGGI 254
Query: 171 LDVQIRAAPRIVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLVGG-DMMAIPGLYQFIQE 229
D QI R+V+KPL+ + P G+ + + P +DF L VG D M +PGL ++
Sbjct: 255 KDFQIHGWVRVVMKPLIRSMPLVGGLQIFFLNNPNIDFNL--VGVIDFMDMPGLSDLLRR 312
Query: 230 TIRNQISALYLWPQPLEIPILDG-SLGAIK--KPVGILHVKVIRAIRLLKMDIF----GA 282
I QI + + P L I + + S A+K +P GIL + V+ A L+K DI G
Sbjct: 313 IIVEQIGNVMVLPNKLPISLSEEVSAVALKMPEPEGILRIHVVEAKDLMKKDISVLGKGK 372
Query: 283 SDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHD 342
SDPY +++ + KT + +NP+W+ + TV Q +++ + D + +
Sbjct: 373 SDPYAIINVGAQEF---KTQIIDNNVNPKWDYWCEATVFIEMGQFVEIQLKDSDDSKKDE 429
Query: 343 KLGMQVVPLRSLTPNETKE--LTLDLVKN 369
LG + + S+ + LTL+ K+
Sbjct: 430 NLGRASIDIASVIKKGVVDSWLTLEDAKH 458
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| MGI|MGI:1098699 Esyt3 "extended synaptotagmin-like protein 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 308 (113.5 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 82/308 (26%), Positives = 153/308 (49%)
Query: 60 IPLWVKHPDYDRIDWLNKFVSDLWPYLDKAICSTARSNLEPIFAEYIGKYCIRSVDFKTL 119
+P W+ PD +R++W NK + +WPYL + + R LEP E +R+ F L
Sbjct: 110 LPAWIHFPDVERVEWANKIIIQIWPYLSMIMENKIREKLEPKIREK--SIHLRTFTFTKL 167
Query: 120 TLGTLPPIIHGIKVC--ETNENELILEPALRWAGNPNITLALKFFSLQITVQLLDVQIRA 177
G P ++G+KV + N ++ L+ + + G+ I++ L+ +I + VQ++
Sbjct: 168 YFGQKCPKVNGVKVHTDKRNRRKVTLDLQICYIGDCEISVELQ----KIRGGVSGVQLQG 223
Query: 178 APRIVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLVG-GDMMAIPGLYQFIQETIRNQIS 236
R++L+PL+ P + V ++KP + + G +++ +PG+ + + + I+
Sbjct: 224 TLRVILEPLLVDKPFIGAVTVFFLQKPHLQ--INWTGLTNLLDMPGINELSDSLLEDLIA 281
Query: 237 ALYLWPQPLEIPI---LDGSLGAIKKPVGILHVKVIRAIRLLKMDIF----GASDPYVQL 289
A + P + +P+ LD + + P G++ V ++ A +L + D F G SDPY ++
Sbjct: 282 AHLVLPNRVTVPVKKGLDVTNLRVPLPCGVIRVHLLEAKKLAQKDNFLGLGGKSDPYAKV 341
Query: 290 SLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVV 349
S+ + ++ K LNP WNE F+ V + Q L++ +YD E D LG +
Sbjct: 342 SIGLQHCRSRTI---YKNLNPTWNEVFEFMVYEVPGQDLEVDLYD-EDTDKDDFLGSLQI 397
Query: 350 PLRSLTPN 357
L + N
Sbjct: 398 CLGDVMKN 405
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| UNIPROTKB|A0FGR9 ESYT3 "Extended synaptotagmin-3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 295 (108.9 bits), Expect = 7.8e-26, Sum P(2) = 7.8e-26
Identities = 84/324 (25%), Positives = 155/324 (47%)
Query: 44 NDHEFDTSSVLDVFPEIPLWVKHPDYDRIDWLNKFVSDLWPYLDKAICSTARSNLEPIFA 103
N+ EF + + +P W+ PD +R++W NK +S WPYL + S R LEP
Sbjct: 92 NEREFISRELRG--QHLPAWIHFPDVERVEWANKIISQTWPYLSMIMESKFREKLEPKIR 149
Query: 104 EYIGKYCIRSVDFKTLTLGTLPPIIHGIKV-CET-NENELILEPALRWAGNPNITLALKF 161
E +R+ F L G P ++G+K T N + ++ + + G+ I++ L+
Sbjct: 150 EK--SIHLRTFTFTKLYFGQKCPRVNGVKAHTNTCNRRRVTVDLQICYIGDCEISVELQ- 206
Query: 162 FSLQITVQLLDVQIRAAPRIVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLVG-GDMMAI 220
+Q V +Q++ R++L+PL+ P + V ++KP + + G +++
Sbjct: 207 -KIQAGVN--GIQLQGTLRVILEPLLVDKPFVGAVTVFFLQKPHLQ--INWTGLTNLLDA 261
Query: 221 PGLYQFIQETIRNQISALYLWPQPLEIPILDG-SLGAIKKPV--GILHVKVIRAIRLLKM 277
PG+ + + I+ + P + +P+ G L ++ P+ G++ V ++ A +L +
Sbjct: 262 PGINDVSDSLLEDLIATHLVLPNRVTVPVKKGLDLTNLRFPLPCGVIRVHLLEAEQLAQK 321
Query: 278 DIF----GASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVY 333
D F G SDPY ++S+ + ++ + LNP WNE F+ V + Q L++ +Y
Sbjct: 322 DNFLGLRGKSDPYAKVSIGLQHFRSRTI---YRNLNPTWNEVFEFMVYEVPGQDLEVDLY 378
Query: 334 DWEKVGTHDKLGMQVVPLRSLTPN 357
D E D LG + L + N
Sbjct: 379 D-EDTDRDDFLGSLQICLGDVMTN 401
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7XA06 | SYT3_ARATH | No assigned EC number | 0.5613 | 0.9920 | 0.9277 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00018176001 | SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (519 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 505 | |||
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 6e-45 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 3e-27 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 4e-26 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 3e-25 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 1e-24 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 2e-18 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 3e-18 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 2e-17 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 6e-16 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 7e-16 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 2e-15 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 2e-15 | |
| cd08676 | 153 | cd08676, C2A_Munc13-like, C2 domain first repeat i | 3e-15 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 2e-14 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 2e-14 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 2e-14 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 3e-14 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 3e-14 | |
| cd08385 | 124 | cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain | 5e-14 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 6e-14 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 7e-14 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 1e-13 | |
| cd04047 | 110 | cd04047, C2B_Copine, C2 domain second repeat in Co | 1e-13 | |
| cd08403 | 134 | cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s | 1e-13 | |
| cd08390 | 123 | cd08390, C2A_Synaptotagmin-15-17, C2A domain first | 1e-13 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 2e-13 | |
| cd08373 | 127 | cd08373, C2A_Ferlin, C2 domain first repeat in Fer | 3e-12 | |
| cd08386 | 125 | cd08386, C2A_Synaptotagmin-7, C2A domain first rep | 5e-12 | |
| cd08404 | 136 | cd08404, C2B_Synaptotagmin-4, C2 domain second rep | 9e-12 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 9e-12 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 1e-11 | |
| cd04036 | 119 | cd04036, C2_cPLA2, C2 domain present in cytosolic | 1e-11 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 2e-11 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 3e-11 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 4e-11 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 6e-11 | |
| cd04018 | 151 | cd04018, C2C_Ferlin, C2 domain third repeat in Fer | 7e-11 | |
| cd08387 | 124 | cd08387, C2A_Synaptotagmin-8, C2A domain first rep | 9e-11 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 1e-10 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 1e-10 | |
| cd08410 | 135 | cd08410, C2B_Synaptotagmin-17, C2 domain second re | 3e-10 | |
| cd04021 | 125 | cd04021, C2_E3_ubiquitin_ligase, C2 domain present | 3e-10 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 4e-10 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 2e-09 | |
| cd08382 | 123 | cd08382, C2_Smurf-like, C2 domain present in Smad | 5e-09 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 5e-09 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 1e-08 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 2e-08 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 3e-08 | |
| cd04039 | 108 | cd04039, C2_PSD, C2 domain present in Phosphatidyl | 3e-08 | |
| cd08373 | 127 | cd08373, C2A_Ferlin, C2 domain first repeat in Fer | 4e-08 | |
| cd08688 | 110 | cd08688, C2_KIAA0528-like, C2 domain found in the | 4e-08 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 4e-08 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 5e-08 | |
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 1e-07 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 2e-07 | |
| cd04020 | 162 | cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat | 2e-07 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 2e-07 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 2e-07 | |
| cd08521 | 123 | cd08521, C2A_SLP, C2 domain first repeat present i | 2e-07 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 3e-07 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 5e-07 | |
| cd08678 | 126 | cd08678, C2_C21orf25-like, C2 domain found in the | 6e-07 | |
| cd04041 | 111 | cd04041, C2A_fungal, C2 domain first repeat; funga | 7e-07 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 1e-06 | |
| cd08393 | 125 | cd08393, C2A_SLP-1_2, C2 domain first repeat prese | 1e-06 | |
| cd04048 | 120 | cd04048, C2A_Copine, C2 domain first repeat in Cop | 2e-06 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 2e-06 | |
| cd04021 | 125 | cd04021, C2_E3_ubiquitin_ligase, C2 domain present | 3e-06 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 4e-06 | |
| cd08409 | 137 | cd08409, C2B_Synaptotagmin-15, C2 domain second re | 4e-06 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 5e-06 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 6e-06 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 9e-06 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 1e-05 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 2e-05 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 2e-05 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 3e-05 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 3e-05 | |
| cd08388 | 128 | cd08388, C2A_Synaptotagmin-4-11, C2A domain first | 3e-05 | |
| cd08381 | 122 | cd08381, C2B_PI3K_class_II, C2 domain second repea | 3e-05 | |
| cd04029 | 125 | cd04029, C2A_SLP-4_5, C2 domain first repeat prese | 3e-05 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 4e-05 | |
| cd04010 | 148 | cd04010, C2B_RasA3, C2 domain second repeat presen | 5e-05 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 8e-05 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 1e-04 | |
| cd04052 | 111 | cd04052, C2B_Tricalbin-like, C2 domain second repe | 1e-04 | |
| cd04010 | 148 | cd04010, C2B_RasA3, C2 domain second repeat presen | 2e-04 | |
| cd04054 | 121 | cd04054, C2A_Rasal1_RasA4, C2 domain first repeat | 2e-04 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 3e-04 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 3e-04 | |
| cd04032 | 127 | cd04032, C2_Perforin, C2 domain of Perforin | 3e-04 | |
| cd08406 | 136 | cd08406, C2B_Synaptotagmin-12, C2 domain second re | 5e-04 | |
| cd04018 | 151 | cd04018, C2C_Ferlin, C2 domain third repeat in Fer | 6e-04 | |
| cd04014 | 132 | cd04014, C2_PKC_epsilon, C2 domain in Protein Kina | 6e-04 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 0.001 | |
| cd08381 | 122 | cd08381, C2B_PI3K_class_II, C2 domain second repea | 0.001 | |
| cd04052 | 111 | cd04052, C2B_Tricalbin-like, C2 domain second repe | 0.001 | |
| cd08383 | 117 | cd08383, C2A_RasGAP, C2 domain (first repeat) of R | 0.002 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 0.003 | |
| cd04015 | 158 | cd04015, C2_plant_PLD, C2 domain present in plant | 0.003 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 0.004 | |
| cd04036 | 119 | cd04036, C2_cPLA2, C2 domain present in cytosolic | 0.004 | |
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 0.004 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 0.004 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 169 bits (429), Expect = 6e-45
Identities = 128/485 (26%), Positives = 196/485 (40%), Gaps = 71/485 (14%)
Query: 2 GLLSFLLGIFGFGIGIPIGFLIAFFIFVHSDATEITDPIIRPNDHEFDTSSVLDVFPEIP 61
+ S++ G GF F FFI + +T + R + V E+
Sbjct: 165 SVASWIFGYLGFS------FASLFFIIL------VTMYVYRTCIKRVRRNIRDLVQQELS 212
Query: 62 LWVKHPDYDRIDWLNKFVSDLWPYLDKAICSTARSNLEPIFAEYIGKYCIRSVDFKTLTL 121
DY+ ++WLN F+ WP ++ +I + AE I + I ++ TL
Sbjct: 213 EEKLENDYESVEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSF-IDALALDEFTL 271
Query: 122 GTLPPIIHGIKV-CETNENELILE---------------PALRWAGNPNITLALKF---- 161
G+ PP I GI+ T + ++++ + R + NP I+L +K
Sbjct: 272 GSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDISDVTATSARASVNPKISLVVKKGKSF 331
Query: 162 --FSLQITVQLLDVQIRAAPRIVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLVGG---- 215
F+L I V+ L + R R+ ++ L+ +P ++ L+E PE DF L +GG
Sbjct: 332 GSFTLPILVEDLFFKGRV--RVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGGDFFG 388
Query: 216 -DMMAIPGLYQFIQETIRNQISALYLWPQPLEIPILDGSLGAIKKPVGILHVKVIRAIRL 274
D+ AIPGL +FIQE I + + + L P L I I G +G++ VK+ A L
Sbjct: 389 VDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIKSAEGL 448
Query: 275 LKMDIF--GASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHV 332
K D G DPY+ ++ S I KT VK TLNP WNE F + + T L L +
Sbjct: 449 KKSDSTINGTVDPYITVTFSDRVIG--KTRVKKNTLNPVWNETFYILLNS-FTDPLNLSL 505
Query: 333 YDWEKVGTHDKLGMQVVPLRSLTPNETK---------------ELTLDL----VKNTNPN 373
YD+ + +G + L L N K LT DL V
Sbjct: 506 YDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLTYDLRFFPVIEDKKE 565
Query: 374 -DPQDKKFERKESEVGKATEYGAKDL---EGKHHNNPYAVVICRGEQKKTKMIKKCRDPI 429
+ E + + K T K L K N + E T +K P
Sbjct: 566 LKGSVEPLEDSNTGILKVTLREVKALDELSSKKDNKSAELYTNAKEVYSTGKLKFTNHPS 625
Query: 430 WNEEF 434
WN ++
Sbjct: 626 WNLQY 630
|
Length = 1227 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 3e-27
Identities = 38/83 (45%), Positives = 49/83 (59%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP 323
L V VI A L D+ G SDPYV++SL G++ KKT V TLNP WNE F V P
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60
Query: 324 ETQVLQLHVYDWEKVGTHDKLGM 346
E L++ VYD+++ G D +G
Sbjct: 61 ELAELRIEVYDYDRFGKDDFIGE 83
|
Length = 85 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 4e-26
Identities = 44/104 (42%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP 323
L V VI A L D+ G SDPYV++SL G++ KT V TLNP WNE F+ V DP
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQK--FKTKVVKNTLNPVWNETFEFPVLDP 58
Query: 324 ETQVLQLHVYDWEKVGTHDKLGMQVVPLRSL-TPNETKELTLDL 366
E+ L + V+D ++ D LG +PL L + EL L L
Sbjct: 59 ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 3e-25
Identities = 41/92 (44%), Positives = 52/92 (56%)
Query: 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKD 322
L VK+I A L D G SDPYV++SL G+ KKT V TLNP WNE F+ V
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60
Query: 323 PETQVLQLHVYDWEKVGTHDKLGMQVVPLRSL 354
PE L++ VYD ++ G D +G +PL L
Sbjct: 61 PELAELEIEVYDKDRFGRDDFIGQVTIPLSDL 92
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 98.4 bits (246), Expect = 1e-24
Identities = 47/104 (45%), Positives = 59/104 (56%), Gaps = 2/104 (1%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP 323
L V VI A L D G SDP+V+ L+GE++ KT KTLNP WNE F++ V
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKV--FKTKTIKKTLNPVWNESFEVPVPSR 58
Query: 324 ETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLV 367
VL++ VYDW++ G D LG + L L P ET ELTL L
Sbjct: 59 VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLD 102
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 2e-18
Identities = 46/105 (43%), Positives = 58/105 (55%), Gaps = 6/105 (5%)
Query: 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSL----SGERIPAKKTSVKMKTLNPEWNEDFKL 318
IL VKV+ I L K DIFGASDPYV++SL I + +T KTLNP+WNE+F
Sbjct: 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFF 60
Query: 319 TVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELT 363
V +P L V+D ++ D LG VPL +L P ET
Sbjct: 61 RV-NPREHRLLFEVFDENRLTRDDFLGQVEVPLNNL-PTETPGNE 103
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 3e-18
Identities = 37/92 (40%), Positives = 58/92 (63%), Gaps = 4/92 (4%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNEDFKLT 319
G L V ++ A L KMD+ G SDPYV++ L +G+R+ KKT++K +TLNP +NE F
Sbjct: 15 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE 74
Query: 320 VKDPETQVLQLH--VYDWEKVGTHDKLGMQVV 349
V + Q + L V D++++G +D +G V+
Sbjct: 75 VPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVL 106
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 2e-17
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 261 VGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTV 320
+G+L V+V+R L D F +SDPYV L+L ++ KT V K LNP WNE+ L+V
Sbjct: 1 LGLLKVRVVRGTNLAVRD-FTSSDPYVVLTLGNQK---VKTRVIKKNLNPVWNEELTLSV 56
Query: 321 KDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSL 354
+P L+L V+D + D +G + L L
Sbjct: 57 PNP-MAPLKLEVFDKDTFSKDDSMGEAEIDLEPL 89
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 6e-16
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLT 319
L V +IR + L MD G SDP+V+L L + + KT VK KTLNPE+NE+F
Sbjct: 13 RGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYD 72
Query: 320 VKDPE--TQVLQLHVYDWEKVGTHDKLG 345
+K + + L++ V+D + ++D +G
Sbjct: 73 IKHSDLAKKTLEITVWDKDIGKSNDYIG 100
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 7e-16
Identities = 44/108 (40%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKK--TSVKMKTLNPEWNEDFK---L 318
LH +IRA L MD G SDPYV+L+L A K T KT NPE+NE +
Sbjct: 17 LHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGI 76
Query: 319 TVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366
T +D + + L+L V D ++ G +D LG +PL+ L PN+TK+ + L
Sbjct: 77 TEEDIQRKTLRLLVLDEDRFG-NDFLGETRIPLKKLKPNQTKQFNICL 123
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 2e-15
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 5/90 (5%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNED--FKLT 319
L V V++A L D G SDPYV++SL G+++ KKTSVK TLNP +NE F +
Sbjct: 16 LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVP 75
Query: 320 VKDPETQVLQLHVYDWEKVGTHDKLGMQVV 349
+ E L + V D + VG ++ +G QVV
Sbjct: 76 AEQLEEVSLVITVVDKDSVGRNEVIG-QVV 104
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 2e-15
Identities = 47/122 (38%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVK 321
G L VKVIRA L DI G SDP+ L L R+ +T KTLNPEWN+ F +K
Sbjct: 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARL---QTHTIYKTLNPEWNKIFTFPIK 57
Query: 322 DPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNPNDPQDKKFE 381
D VL++ VYD +K + LG +PL S+ E K L +DKK
Sbjct: 58 DI-HDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGERKWYAL-----------KDKKLR 105
Query: 382 RK 383
+
Sbjct: 106 TR 107
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 3e-15
Identities = 41/127 (32%), Positives = 56/127 (44%), Gaps = 34/127 (26%)
Query: 258 KKPVGILHVKVIRAIRLLKMDIFGASDPYVQL-----------------------SLSGE 294
+ P+ +L V VI A LL D+ G SDPY L ++ +
Sbjct: 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKD 83
Query: 295 RIPA---KKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDK--LGMQVV 349
+PA K T VK +TLNP WNE F+ V+D L L ++D HD LG +
Sbjct: 84 TVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWD------HDDDFLGCVNI 137
Query: 350 PLRSLTP 356
PL+ L
Sbjct: 138 PLKDLPS 144
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 2e-14
Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
Query: 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKD 322
++ + ++ L MD G SDPYV+ L E+ K+ V KTLNP+W E F L + D
Sbjct: 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEK---YKSKVCSKTLNPQWLEQFDLHLFD 57
Query: 323 PETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366
++Q+L++ V+D + + +G + L +L +T L L+L
Sbjct: 58 DQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELEL 101
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 2e-14
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP 323
L V+ A L D G SDP+V++ +G+ +TSV K+ P WNE F+ + +
Sbjct: 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQ---TLETSVVKKSCYPRWNEVFEFELMEG 58
Query: 324 ETQVLQLHVYDWEKVGTHDKLGMQVVPLRSL 354
L + V+DW+ V +D LG V +++L
Sbjct: 59 ADSPLSVEVWDWDLVSKNDFLGKVVFSIQTL 89
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 2e-14
Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP 323
L + + L D G SDPYV+ G+ + KT K LNP W+E F L ++D
Sbjct: 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYK--NLNPVWDEKFTLPIEDV 59
Query: 324 ETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNPNDPQD 377
TQ L + V+D+++ T D +G V L +L N+ E+ L L +PN +D
Sbjct: 60 -TQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLE---DPNSDED 109
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 3e-14
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 266 VKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPET 325
V V+RA L D G SDPY+++ L ++I + + TLNP + + F+L P
Sbjct: 4 VYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIP-NTLNPVFGKMFELEATLPGN 62
Query: 326 QVLQLHVYDWEKVGTHDKLG 345
+L++ V D++ +G+ D +G
Sbjct: 63 SILKISVMDYDLLGSDDLIG 82
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 3e-14
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPA--KKTSVKMKTLNPEWNEDFKLTVK 321
L V+V A L+ MD G SDPYV+L L + +KT KTLNP WNE F +K
Sbjct: 15 LTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLK 74
Query: 322 DP-ETQVLQLHVYDWEKVGTHDKLG 345
+ + L + V+DW++ +D +G
Sbjct: 75 PADKDRRLSIEVWDWDRTTRNDFMG 99
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 5e-14
Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTV--K 321
L V +I+A L MD+ G SDPYV++ L ++ +T V KTLNP +NE F V
Sbjct: 18 LTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYS 77
Query: 322 DPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368
+ + L VYD+++ HD +G VPL ++ E DL
Sbjct: 78 ELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLES 124
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 6e-14
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 259 KPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKL 318
+ G L + + L D G SDP+V+L L+ + KT V KTLNP WNE+F +
Sbjct: 1037 ENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKS--VYKTKVVKKTLNPVWNEEFTI 1094
Query: 319 TVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNPND 374
V + VL ++V DW+ +D LG + L L P T + L T
Sbjct: 1095 EVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVL 1150
|
Length = 1227 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 7e-14
Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 394 GAKDLEGKHHN---NPYAVVICRGEQK-KTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHI 449
A++L K N +PY V G+QK KTK++K +P+WNE F+F + P + + +
Sbjct: 7 EARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLD-PESDTLTV 65
Query: 450 EVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLI 489
EV K R + + LG V+I L ++L +G+ E + +
Sbjct: 66 EVWDKDRFSK---DDFLGEVEIPLSELLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 1e-13
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNEDFKLT 319
+ V +I+A L MDI G SDPYV++ L +R+ KKT +K +TLNP +NE F
Sbjct: 15 NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN 74
Query: 320 V---KDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETK 360
+ + ET L + V D +++ +D +G + +S E K
Sbjct: 75 IPLERLRETT-LIITVMDKDRLSRNDLIGKIYLGWKS-GGLELK 116
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 1e-13
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 269 IRAIRLLKMDIFGASDPYVQLSL---SGERIPAKKTSVKMKTLNPEWNEDFKLTV----- 320
+L K D FG SDP++++S G + +T V TLNP W F + +
Sbjct: 7 FSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWKP-FTIPLQKLCN 65
Query: 321 KDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTL 364
D + +++ VYD++ G HD +G L L + E L
Sbjct: 66 GDYDRP-IKIEVYDYDSSGKHDLIGEFETTLDELLKSSPLEFEL 108
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110 |
| >gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 1e-13
Identities = 37/89 (41%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNED--FK 317
G L + +I+A L MDI G SDPYV++SL G R+ KKTSVK TLNP +NE F
Sbjct: 14 GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD 73
Query: 318 LTVKDPETQVLQLHVYDWEKVGTHDKLGM 346
+ ++ + L + V D+++VG ++ +G+
Sbjct: 74 VPPENVDNVSLIIAVVDYDRVGHNELIGV 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 1e-13
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 264 LHVKVIRAIRLL-KMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKD 322
L V +I+A L + DP+V++ L + + ++ VK KT NP ++E F V
Sbjct: 16 LTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSF 75
Query: 323 PETQ--VLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368
E Q L+L VYD ++ H +G + PL+ L + + DL
Sbjct: 76 KELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 2e-13
Identities = 43/114 (37%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 261 VGILHVKVIRAIRLLKMDIFGAS-DPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLT 319
+G+L V + A L DI G + DPYV S+S R A +T VK T NP WNE +
Sbjct: 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELA-RTKVKKDTSNPVWNETKYIL 59
Query: 320 VKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKE-LTLDLVKNTNP 372
V T+ L L VYD+ +G L SL N +E LT +L++N P
Sbjct: 60 VNS-LTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKP 112
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 3e-12
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 395 AKDLEGKH-HNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVK 452
K+L G + A V RG +KKT++++ +P+WNE F++ +P E + I VK
Sbjct: 5 LKNLPGLKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVK 64
Query: 453 SKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEI 500
+ R R +G ++L D++ G L+ L++S I
Sbjct: 65 DYEKVGRNR---LIGSATVSLQDLVSEGLLEVTEPLLDSNGRPTGATI 109
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 5e-12
Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 11/95 (11%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKK----TSVKMKTLNPEWNEDFK-- 317
L +K+++A+ L D G SDP+V++ L +P KK T VK K LNP WNE F
Sbjct: 18 LTLKILKAVELPAKDFSGTSDPFVKIYL----LPDKKHKLETKVKRKNLNPHWNETFLFE 73
Query: 318 -LTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPL 351
+ + +VL L V D+++ +D +G +PL
Sbjct: 74 GFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPL 108
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 9e-12
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNEDFKLTVK 321
L V V++A L KMD+ G +DPYV+++L +RI KKT VK TLNP +NE F +
Sbjct: 17 LTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIP 76
Query: 322 DPETQ--VLQLHVYDWEKVGTHDKLG 345
E + ++ V D ++V ++ +G
Sbjct: 77 SEELEDISVEFLVLDSDRVTKNEVIG 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 9e-12
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 262 GILHVKVIRAIRLLKMDIF------GASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNED 315
G+L + VI A L+ D F G SDPYV + + + K+ V + LNP+WNE
Sbjct: 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTF---KSKVIKENLNPKWNEV 57
Query: 316 FKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRS 353
++ V + Q L++ ++D E D LG + L S
Sbjct: 58 YEAVVDEVPGQELEIELFD-EDPDKDDFLGRLSIDLGS 94
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 1e-11
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 262 GILHVKVIRAIRLLKMDIF--GASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLT 319
G+L V V+ A L D G SDPY LS+ +R KT TLNP+WN +
Sbjct: 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRF---KTQTIPNTLNPKWNYWCEFP 57
Query: 320 VKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELT 363
+ + Q+L+L ++D ++ D LG + L + + +
Sbjct: 58 IFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQS 101
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 1e-11
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSL---SGERIPAKKTSVKMKTLNPEWNEDFKLTV 320
L V+V+RA + K D+ D YV+L L S E+ K+T ++NP WNE F+ +
Sbjct: 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEK---KRTKTIKNSINPVWNETFEFRI 58
Query: 321 KDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366
+ VL+L V D + V D LG + + L E +T L
Sbjct: 59 QSQVKNVLELTVMDEDYVMD-DHLGTVLFDVSKLKLGEKVRVTFSL 103
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 2e-11
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 395 AKDLEGKHHN---NPYAVVICRGEQ---KKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIH 448
A++L K +PY V G+ KKTK++K +P+WNE F+F+ L E +
Sbjct: 9 ARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAE-LE 67
Query: 449 IEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLK 483
IEV K R + +G V I L D+L GR +
Sbjct: 68 IEVYDKD---RFGRDDFIGQVTIPLSDLLLGGRHE 99
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 3e-11
Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 8/99 (8%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERI----PAKKTSVKMKTLNPEWNEDFKLT 319
L V+++ A LL +D G+SDP+V++ L + P KT VK KTL P ++E F+
Sbjct: 18 LRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFN 77
Query: 320 VKDP----ETQVLQLHVYDWEKVGTHDKLGMQVVPLRSL 354
V E +L V D++ +G++D G +PL +
Sbjct: 78 VPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDI 116
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 4e-11
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 395 AKDLEGK---HHNNPYAVVICRGE---QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIH 448
AK+L K ++PY V G+ KKTK++K +P+WNE F F+ L E +
Sbjct: 8 AKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLPELAE-LR 66
Query: 449 IEVKSKRRGLRLRSKESLGYV 469
IEV R + +G V
Sbjct: 67 IEVYDYD---RFGKDDFIGEV 84
|
Length = 85 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 6e-11
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 266 VKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPET 325
++++RA L G SDPYV L + + KT TLNP W+E+F+L V E
Sbjct: 5 IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEP 64
Query: 326 QVLQLHVYDWEKVGTHDKLG---MQVVPLRSLTPNETKELTLDL 366
+ V+D VG HD G +++ P R +E+ LDL
Sbjct: 65 LWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDL 108
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 7e-11
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 18/106 (16%)
Query: 263 ILHVKVIRAIRLLKMD-------IFGAS-------DPYVQLSLSGERIPAKKTSVKMKTL 308
K+ RA L +MD DPYV++S +G+++ KTSVK +
Sbjct: 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKV---KTSVKKNSY 57
Query: 309 NPEWNEDFKLTVKDPE-TQVLQLHVYDWEKVGTHDKLGMQVVPLRS 353
NPEWNE P + +++ + DW++VG D +G + L
Sbjct: 58 NPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSK 103
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151 |
| >gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 9e-11
Identities = 34/107 (31%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 259 KPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKL 318
K +GIL+VK+I+A L D G +DPY ++ L +R K++ + KTLNPE++E F
Sbjct: 13 KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVF 72
Query: 319 TVK--DPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELT 363
V + + L++ +YD+++ + +G+ +PL + +E +L
Sbjct: 73 EVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLW 119
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 1e-10
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 17/107 (15%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSG-ERIPAKKTSVKMKTLNPEWNEDF------ 316
L V+V+ R L + G DP+ +++L+ + K+T VK KT NP ++E F
Sbjct: 1 LSVRVLEC-RDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59
Query: 317 ---------KLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSL 354
K+ +D E L++ ++ V D LG +PL+ L
Sbjct: 60 GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGL 106
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 1e-10
Identities = 36/101 (35%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 263 ILHVKVIRA--IRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKT-------LNPEWN 313
L +K+I + K D DPYV++ + G +PA S K KT NP WN
Sbjct: 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHG--LPADD-SAKFKTKVVKNNGFNPVWN 59
Query: 314 EDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSL 354
E F+ V PE L+ VYD + D LG +PL SL
Sbjct: 60 ETFEFDVTVPELAFLRFVVYDEDSGD-DDFLGQACLPLDSL 99
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 3e-10
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSL-SGER-IPAKKTSVKMKTLNPEWNE--DFK 317
G L+V +IRA +LL+ D+ SDP+V++ L G + I KKTS T++P +NE FK
Sbjct: 14 GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFK 73
Query: 318 LTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNET 359
+ ++ E L VY ++D +G V+ S P+ET
Sbjct: 74 VPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPSET 115
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135 |
| >gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 3e-10
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP 323
L + V A +L DPYV++++ G+ P KKT V KT NP+WNE F + V
Sbjct: 4 LQITVESA-KLKSNSKSFKPDPYVEVTVDGQ--PPKKTEVSKKTSNPKWNEHFTVLVT-- 58
Query: 324 ETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPN-----ETKELTLDL 366
L+ V+ + LG + L + N E +LTL+L
Sbjct: 59 PQSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNL 106
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 4e-10
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 284 DPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDK 343
PYV+L++ +K+ VK +T NP W E F V++PE Q L++ V D + +
Sbjct: 22 SPYVELTVGKT---TQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKTGKS--- 75
Query: 344 LGMQVVPLRSLTPNETKELTLD 365
LG +PL L +LTLD
Sbjct: 76 LGSLTLPLSELLKEP--DLTLD 95
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-09
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP 323
L V+V+ A L+ D G+S YV+L G++ K+T K K LNP WNE V DP
Sbjct: 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK---KRTRTKPKDLNPVWNEKLVFNVSDP 58
Query: 324 E---TQVLQLHVYDWEKVG-THDKLGMQVVPLRSLTP 356
VL+++VY+ + G LG + S P
Sbjct: 59 SRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVP 95
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 5e-09
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 14/116 (12%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP 323
+ + V+ A L K D+F DP+ +++ G + T V KTL+P+WNE F LTV
Sbjct: 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQT--HSTDVAKKTLDPKWNEHFDLTVGPS 59
Query: 324 ETQVLQLHVYDWEKVGTHDK----LGMQVVP----LRSLTPNETKELTLDLVKNTN 371
+Q+ +++ K LG + L + L K+ N
Sbjct: 60 SIITIQV----FDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDN 111
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 5e-09
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 413 RGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEK-IHIEVKSKRRGLRLRSKESLGYVDI 471
+ ++KT + K +P+++E F+F LK + + + VK+ + R K+ LG V I
Sbjct: 51 KSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNS-KSFLSREKKLLGQVLI 109
Query: 472 NLHDV-LHNG 480
+L D+ L G
Sbjct: 110 DLSDLDLSKG 119
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-08
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKK--TSVKMKTLNPEWNEDF--- 316
L V V++A L D +PYV++ L +R K T KTLNPEWN+ F
Sbjct: 16 SQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYS 75
Query: 317 KLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPL 351
+ + + + L++ V+D+++ G +D LG V+ L
Sbjct: 76 NVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDL 110
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 2e-08
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVK 321
G+L + + +A L ++ G DPYV++ ++G I +T TLNP W+E + V
Sbjct: 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNG--IVKGRTVTISNTLNPVWDEVLYVPVT 58
Query: 322 DPETQVLQLHVYDWEKVGTHDK-LG 345
P Q + L V D+EKVG D+ LG
Sbjct: 59 SP-NQKITLEVMDYEKVG-KDRSLG 81
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 3e-08
Identities = 40/132 (30%), Positives = 55/132 (41%), Gaps = 19/132 (14%)
Query: 265 HVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNE--DFKL---T 319
V V++A LL G +D YV + L E+ TSVK KT +P W E F+L
Sbjct: 2 QVTVLQARGLLCKGKSGTNDAYVIIQLGKEKY---STSVKEKTTSPVWKEECSFELPGLL 58
Query: 320 VKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELT----LDLVKNTNPNDP 375
+ LQL V +G LG +PL L ++ + T L+ + P
Sbjct: 59 SGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLE-------SKP 111
Query: 376 QDKKFERKESEV 387
ER E EV
Sbjct: 112 GKDDKERGEIEV 123
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-08
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 284 DPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQV-LQLHVYDWEKVGTHD 342
DP+V +S G R+ +TS + TLNP +NE V E +Q V D +K +D
Sbjct: 27 DPFVIISF-GRRV--FRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFND 83
Query: 343 KLGMQVVPLRSLT 355
+ + ++ L
Sbjct: 84 YVATGSLSVQELL 96
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108 |
| >gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 4e-08
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 280 FGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHVYDWEK 337
G D +++ G + KKT V LNP WNE F+ + + L++ V D+EK
Sbjct: 12 KGKGDRIAKVTFRGVK---KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK 68
Query: 338 VGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTN 371
VG + +G V L+ L E+T L+ ++N
Sbjct: 69 VGRNRLIGSATVSLQDLVSEGLLEVTEPLL-DSN 101
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 4e-08
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 264 LHVKVIRAIRLLKMD-IFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWN-EDFKLTVK 321
L V+V+ A L MD +D +V++ KT V K+LNP WN E F+ V
Sbjct: 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGST---TYKTDVVKKSLNPVWNSEWFRFEVD 57
Query: 322 DPETQ--VLQLHVYDWEKVGTHDKLGMQVVPLRSL 354
D E Q LQ+ V D + +D +G + L L
Sbjct: 58 DEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPL 92
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 4e-08
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 261 VGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTV 320
+G L V ++ L + G SDPY ++S+ + KT V TLNP+WN + V
Sbjct: 14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQE---HKTKVVSDTLNPKWNSSMQFFV 70
Query: 321 KDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETK 360
KD E VL + V+D + D LG + + + +
Sbjct: 71 KDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKE 110
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 5e-08
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 395 AKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSK 454
AKD GK ++PYA++ ++ KT+ I +P WN +F A + + + + K
Sbjct: 15 AKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ-NQLLKLILWDK 73
Query: 455 RRGLRLRSKESLGYVDINLHDVLHNG 480
R K+ LG DI L +V +G
Sbjct: 74 ---DRFAGKDYLGEFDIALEEVFADG 96
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 1e-07
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 395 AKDLE-----GKHHNNPYAVVICRGEQK-KTKMIKKC-RDPIWNEEFQFDFEEAPLKE-- 445
A+DL+ GK YAVV K T + + +P WNE +F +E L++
Sbjct: 9 AEDLKNVNLFGKM--KVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGR 66
Query: 446 -KIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGR 481
+ IEV +R L + +G V + L D+L
Sbjct: 67 LALTIEVYCERPSL---GDKLIGEVRVPLKDLLDGAS 100
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-07
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNEDFKLTVK 321
L V V + L D DPYV+L L + +KTSVK LNP ++E F+ V
Sbjct: 18 LIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVS 77
Query: 322 DPETQVLQLHV 332
E + L V
Sbjct: 78 LEELKRRTLDV 88
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 10/114 (8%)
Query: 237 ALYLWPQPLEIPILDGSLGAIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERI 296
AL P E G+L + K G LHV V A L + G SD +V+ L ++
Sbjct: 7 ALKYVPPESE-----GALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKS 61
Query: 297 PA--KKTSVKMKTLNPEWNEDF---KLTVKDPETQVLQLHVYDWEKVGTHDKLG 345
+KT V K++NP WN F ++ +D L+L V+D +K+ ++D LG
Sbjct: 62 KKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLG 115
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-07
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 5/115 (4%)
Query: 260 PVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLT 319
P + V V A L K D G +DPYV + GE + ++ V+ TL+PE++
Sbjct: 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESV---RSPVQKDTLSPEFDTQAIFY 57
Query: 320 VKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNPND 374
K P + + + V++ + + LG + + L L +
Sbjct: 58 RKKPRSPIK-IQVWNSNLLC-DEFLGQATLSADPNDSQTLRTLPLRKRGRDAAGE 110
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-07
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 14/105 (13%)
Query: 406 PYAVVICRGEQKKTKMIK-KCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKE 464
PY ++ CR +++K+K+ K R+P WNE+F+F E + LR+ K+
Sbjct: 24 PYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLI-------LRIMDKD 76
Query: 465 S------LGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWK 503
+ +G I+L + G L+ +K V + +K
Sbjct: 77 NFSDDDFIGEATIHLKGLFEEGVEPGTAELVPAKYNVVLEDDTYK 121
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-07
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 283 SDPYVQLSLSGERIPA--KKTSVKMKTLNPEWNEDFKLTVK--DPETQVLQLHVYDWEKV 338
S+PYV++ L ++ +KTSVK T NP +NE K + ET+ LQL V+ ++
Sbjct: 36 SNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRF 95
Query: 339 GTHDKLGMQVVPLRSLTPNETKE 361
G + LG +PL S + +
Sbjct: 96 GRNTFLGEVEIPLDSWDLDSQQS 118
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-07
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 16/118 (13%)
Query: 395 AKDLEGKHHN---------NPYAVVICRGEQK-KTKMIKKCRDPIWNEEFQFDFEEAPLK 444
A+DL K +PY +V G Q K+K+IK+ +P WNE ++ +E P +
Sbjct: 10 AQDLVAKDKFVGGLVKGKSDPYVIVRV-GAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQ 68
Query: 445 EKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKW 502
E + IE+ + + LG + I+L V G + E L + K+G + ++++W
Sbjct: 69 E-LEIELFDEDPD----KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 5e-07
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 405 NPYAVVIC----RGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEV 451
+P+A V + + K+TK+ KK +P ++E F F+ EK +V
Sbjct: 20 DPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKV 70
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 6e-07
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKK--TSVKMKTLNPEWNEDFKLTVK 321
L VK I+A L + G+S+PY L + P +K +S + T NP W+E F +
Sbjct: 1 LLVKNIKANGLSEA--AGSSNPYCVLEMDE---PPQKYQSSTQKNTSNPFWDEHFLFELS 55
Query: 322 DPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNPNDP 375
P ++ L VYD K LG+ +VP L N + L D
Sbjct: 56 -PNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDS 108
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 7e-07
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 262 GILHVKVIRAIRLLKMDI-FGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTV 320
G+L V + RA L K D G+SDPYV S + P T + K LNP W E + + V
Sbjct: 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLV 60
Query: 321 KDPETQV---LQLHVYDWEKVGTHDKLGMQVVPLRSL 354
E + L ++D ++ D+LG + L+ L
Sbjct: 61 TPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKEL 97
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-06
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 11/113 (9%)
Query: 395 AKDLEGKHH---NNPYAVVICRGEQKKTKMIKKC-RDPIWNEEFQFDFEEAPLKEKIHIE 450
A++L K +PY V+ G KKTK + + P W+EE +F+ E K + +
Sbjct: 10 ARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED-KKPILKVA 68
Query: 451 VKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHL-INSKN-GAVQVEIK 501
V + R + +G +++L L G + Y L + + G V +E+
Sbjct: 69 VFDDDK----RKPDLIGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELT 117
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 38/95 (40%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 264 LHVKVIRAIRLLKMDI-FGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTV 320
LHV VI+ L D SDPYV+ L + +KTSVK KTLNP +NE + V
Sbjct: 17 LHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKV 76
Query: 321 KDPE--TQVLQLHVYDWEKVGTHDKLGMQVVPLRS 353
+ E T+VL L V+ + +G + LG V L S
Sbjct: 77 EREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGS 111
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 2e-06
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 274 LLKMDIFGASDPYVQLSL----SGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQ 329
LL D+ SDP+V + + SG+ + +T V LNP++ F + E Q L+
Sbjct: 12 LLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLR 71
Query: 330 LHVYD----WEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKN 369
VYD + + HD LG L + + ++LTL L
Sbjct: 72 FEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPLKGG 115
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 410 VICR-----GEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKE 464
C+ G ++TK++ P W E F + F+ P +K+HI KSK K
Sbjct: 2001 AFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT----FGKS 2056
Query: 465 SLGYVDINLHDVLHNGRLKEKYHLI--NSKNGA---VQVEIKW 502
SLG V I + V+ G +Y L ++K+G+ +++E +W
Sbjct: 2057 SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQW 2099
|
Length = 2102 |
| >gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 3e-06
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 405 NPYAVVICRGEQ-KKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSK 463
+PY V G+ KKT++ KK +P WNE F + + +V S L++
Sbjct: 23 DPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP---QSTLEFKVWSHH---TLKAD 76
Query: 464 ESLGYVDINLHDVL--HNGRL---KEKYHLINSKNGAVQ 497
LG ++L D+L HNG+L K +L + G+
Sbjct: 77 VLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSV 115
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-06
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
Query: 402 HHNNPYAVVICRGEQK-KTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRL 460
++PY VV+ G QK KT++IKK +P+WNEE + +EV K
Sbjct: 20 TSSDPY-VVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMA--PLKLEVFDKD---TF 73
Query: 461 RSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAV 496
+S+G +I+L ++ +L HL ++ G
Sbjct: 74 SKDDSMGEAEIDLEPLVEAAKL---DHLRDTPGGTQ 106
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176054 cd08409, C2B_Synaptotagmin-15, C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-06
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLS--GERIPAKKTSVKMKTLNPEWNED--FKLT 319
L V V+RA L ++D + YV++SL + + KKT V +P +NE FK+T
Sbjct: 17 LTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVT 75
Query: 320 VKDPETQVLQLHVYDWEKVGTHDKLGMQVV 349
+ +T L L V V LG V+
Sbjct: 76 SRQLDTASLSLSVMQSGGVRKSKLLGRVVL 105
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 137 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 5e-06
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 405 NPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKE 464
+PY + +K+K+ ++ +P+W E F F P +++ IEVK + G
Sbjct: 22 SPYVELTVGKTTQKSKVKERTNNPVWEEGFTF-LVRNPENQELEIEVKDDKTGK------ 74
Query: 465 SLGYVDINLHDVLHNGRL--KEKYHLINS 491
SLG + + L ++L L + + L NS
Sbjct: 75 SLGSLTLPLSELLKEPDLTLDQPFPLDNS 103
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 6e-06
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 419 TKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHD 475
TK IKK +P WNEEF F P + ++ EV + RL + LG V++ L++
Sbjct: 43 TKTIKKTLNPKWNEEFFFRVN--PREHRLLFEVFDEN---RLTRDDFLGQVEVPLNN 94
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 9e-06
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 400 GKHHNNPYAVVICRGEQK-KTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRRG 457
GK N V+I G++K T + +K P+W EE F+ +
Sbjct: 15 GKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHR 74
Query: 458 LRLRSKESLGYVDINLHDVLHN-GRLKEKYHLINSKNG 494
L + LG V I L+D+ + GR + ++ + SK G
Sbjct: 75 NLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPG 112
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 1e-05
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 395 AKDLEGKHHN---NPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEV 451
A+DL K N +P+ V G+ +T ++KK P WNE F+F+ E + +EV
Sbjct: 9 ARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGA-DSPLSVEV 67
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSV-KMKTLNPEWNEDFKLTV 320
G L V +I A L D G DPYV + + +K+ V K NPEWNE FK TV
Sbjct: 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQE---RKSKVAKGDGRNPEWNEKFKFTV 57
Query: 321 KDPETQV---LQLHVYDWEKVGTHDKLGMQVVPLRSL 354
+ P L L + D + D +G + L+ L
Sbjct: 58 EYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGL 94
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 2e-05
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 265 HVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPE 324
V+VI A +L+ +I DP V++ + G++ K TSVK T P +NE F +
Sbjct: 7 RVRVIEARQLVGGNI----DPVVKVEVGGQK---KYTSVKKGTNCPFYNEYFFFNFHESP 59
Query: 325 TQVLQLH----VYDWEKVGTHDKLG 345
++ VYD + + +G
Sbjct: 60 DELFDKIIKISVYDSRSLRSDTLIG 84
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 3e-05
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 417 KKTKMIKKCRDPIWNEEFQFDFEEAPLKE-KIHIEVKSKRRGLRLRSKESLGYVDI 471
KKT + K +P++NE F FD L+E + I V K R E +G V +
Sbjct: 53 KKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGR---NEVIGQVVL 105
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-05
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 417 KKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEV 451
+KTK IKK +P+WNE F FD + A ++ IEV
Sbjct: 52 QKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEV 86
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-05
Identities = 36/107 (33%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
Query: 264 LHVKVIRAIRLLKMDI-FGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKD 322
L V +I L MD G SDPYV+L L E+ KT V KT NP ++E F
Sbjct: 18 LLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIP 77
Query: 323 PET-QVLQLH--VYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366
Q L LH V +++ D +G V PL EL +
Sbjct: 78 YNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSR 124
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-05
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 284 DPYVQLSL--SGERIPAKKTSVKMKTLNPEWNEDF---KLTVKDPETQVLQLHVYDWEKV 338
DPYV+ L ++ +KT V KT NP +NE L V+D + +VLQ+ V+ + +
Sbjct: 34 DPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSL 93
Query: 339 GTHDKLGMQVVPLRSLTPNETKE 361
++ LG +PL+ L ++ E
Sbjct: 94 VENEFLGGVCIPLKKLDLSQETE 116
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122 |
| >gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-05
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 283 SDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHVYDWEKV 338
S+PYV+ L R +KTS+K T NP +NE K ++ ET+ LQL V+ +++
Sbjct: 37 SNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRF 96
Query: 339 GTHDKLGMQVVPLRS 353
G + LG +PL S
Sbjct: 97 GRNTFLGEVEIPLDS 111
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 4e-05
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 394 GAKDL---EGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFE--EAPLKEKIH 448
A+DL +G+ ++ Y + G++K+T+ K +P+WNE+ F+ +
Sbjct: 8 DAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLE 67
Query: 449 IEVKSKRRGLRLRSKESLGYVDIN 472
+ V + RR R RS LG V I+
Sbjct: 68 VYVYNDRRSGRRRS--FLGRVRIS 89
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-05
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 405 NPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEV 451
+PYA V + K+TK+ KK +P ++E F FD EK E+
Sbjct: 20 DPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEM 71
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 8e-05
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 394 GAKDLEGKHHN---NPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIE 450
A+ L + +PY ++ C GE ++ + K P ++ Q F + I I+
Sbjct: 11 SAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDT--QAIFYRKKPRSPIKIQ 68
Query: 451 VKSKRR 456
V +
Sbjct: 69 VWNSNL 74
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 1e-04
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKT-LNPEWNEDFKLTV 320
G L V V++A L DPY L + G KKT + +PEW+E+ + +
Sbjct: 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGV---TKKTKTDFRGGQHPEWDEELRFEI 57
Query: 321 KDPETQVLQLHVYDWEK 337
+ + +L++ V+D +K
Sbjct: 58 TEDKKPILKVAVFDDDK 74
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 1e-04
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 405 NPYAVVICRGEQ-KKTKMIKKCRDPIWNEEFQF---DFEEAPLKEKIHIEVKSKRRGLRL 460
+PYA + G+ T++ KK +P WN +F D ++ ++ + VK R
Sbjct: 14 SPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKS----RVTVVVKDD----RD 65
Query: 461 RSKESLGYVDINLHDVL-HNGRLKEKYHLINSKNGAVQVEIKWKAI 505
R LG V I+L+D++ ++ + L + G +++ WK +
Sbjct: 66 RHDPVLGSVSISLNDLIDATSVGQQWFPLSGNGQGRIRISALWKPV 111
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNEDFKLTV- 320
L V+VI L + G DPY ++L S ++ K+T VK KT NP+++E F V
Sbjct: 2 LSVRVIECSDLALKN--GTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVT 59
Query: 321 --KDPETQVLQLHVYDWEKV 338
PE + ++ D EK+
Sbjct: 60 IDSSPEKKQFEMPEEDAEKL 79
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148 |
| >gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 2e-04
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP 323
L+++++ L DI G+SDPY + + E +T+ KTLNP W E++ + + P
Sbjct: 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNE--VIIRTATVWKTLNPFWGEEYTVHLP-P 58
Query: 324 ETQVLQLHVYDWEKVGTHDKLG 345
+ +V D + + D +G
Sbjct: 59 GFHTVSFYVLDEDTLSRDDVIG 80
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 3e-04
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 386 EVGKATEYGAKDLEGKHHNNPYAVVIC-----RGEQKKTKMIKKCRDPIWNEEFQFD 437
+ KA A D+ G ++PY V R E+KKT + K+ +P++NE F F+
Sbjct: 20 NIIKARNLKAMDINGT--SDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN 74
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 3e-04
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDF 316
+ + V+ A L+ D G SDPYV + + + K+T + LNP WNE F
Sbjct: 3 ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTK---KRTKTIPQNLNPVWNEKF 52
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 3e-04
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 258 KKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFK 317
++ + L V V+RA L D F ++D YV++ G+ K+T V NP WN F
Sbjct: 24 RRGLATLTVTVLRA-TGLWGDYFTSTDGYVKVFFGGQE---KRTEVIWNNNNPRWNATFD 79
Query: 318 L-TVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRS 353
+V+ L+ V+D + D LG V +
Sbjct: 80 FGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEA 116
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127 |
| >gnl|CDD|176051 cd08406, C2B_Synaptotagmin-12, C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 5e-04
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNEDFKLTVK 321
L V V++A L+ + +DP+V++ L G +I KKTSVK NP +NE +V
Sbjct: 17 LTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVP 76
Query: 322 DPETQVLQLHV 332
Q L L V
Sbjct: 77 AIVLQDLSLRV 87
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 6e-04
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 405 NPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKE 464
+PY V G++ KT + K +P WNE+ F PL E+I I+++ R+ + +
Sbjct: 36 DPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRDWD---RVGNDD 92
Query: 465 SLGYVDINLHDVLHNGR 481
+G I+L + ++G
Sbjct: 93 VIGTHFIDLSKISNSGD 109
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151 |
| >gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 6e-04
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 284 DPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDF 316
DPYV + + I KTS K KT +P WNE+F
Sbjct: 36 DPYVSIDVDDTHI--GKTSTKPKTNSPVWNEEF 66
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.001
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 405 NPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLK---EKIHIEVKSKRRGLR 459
+P V G++K T + K P +NE F F+F E+P + + I I V R
Sbjct: 22 DPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRS 79
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.001
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 417 KKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDV 476
+KTK+++K R+P +NE +D ++ ++V L E LG V I L +
Sbjct: 51 RKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD-SLVENEFLGGVCIPLKKL 109
Query: 477 LHNGRLKEKYHL 488
+ ++ Y L
Sbjct: 110 DLSQETEKWYPL 121
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122 |
| >gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.001
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 281 GASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYD 334
G PY +L L+G+ + T VK KT NP WN + V D + + V D
Sbjct: 11 GLLSPYAELYLNGKLV--YTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKD 62
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.002
Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 10/100 (10%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTV--K 321
L ++++ A L G DPY +SL + +T K LNP W E+F
Sbjct: 2 LRLRILEAKNLP---SKGTRDPYCTVSLDQVEV--ARTKTVEK-LNPFWGEEFVFDDPPP 55
Query: 322 DPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKE 361
D L + D +G V L L + K+
Sbjct: 56 DVTFFTLSFYNKDKRSKDRDIVIG--KVALSKLDLGQGKD 93
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.003
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSV-KMKTLNPEWNEDFKLTVKD 322
L V VI A L+ D + +V+ L + +T + + NP WNE+ +
Sbjct: 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQ---VLRTRPSQTRNGNPSWNEELMFVAAE 58
Query: 323 PETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTP 356
P L L V D + LG V+PL +
Sbjct: 59 PFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIER 92
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.003
Identities = 38/148 (25%), Positives = 54/148 (36%), Gaps = 35/148 (23%)
Query: 262 GILHVKVIRAIRLLKMDIF------------------------------GASDPYVQLSL 291
G L V + A L MD+F SDPY + L
Sbjct: 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDL 66
Query: 292 SGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPL 351
+G R+ +T V + NP WNE F + + V + V D + VG +G +P+
Sbjct: 67 AGARV--ARTRVIENSENPVWNESFHIYCAHYASHV-EFTVKDNDVVGA-QLIGRAYIPV 122
Query: 352 RSLTPNETKELTLDLVK-NTNPNDPQDK 378
L E E L ++ N P P K
Sbjct: 123 EDLLSGEPVEGWLPILDSNGKPPKPGAK 150
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
Query: 244 PLEIPILDGSLGAIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSV 303
P+ S P+G + V V +A L G SDPY + ++ +T
Sbjct: 693 PIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNLVK--YRTIY 750
Query: 304 KMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVG 339
TLNP WNE + V Q L L D+E+ G
Sbjct: 751 GSSTLNPIWNEILYVPVTSK-NQRLTLECMDYEESG 785
|
Length = 1227 |
| >gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.004
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 415 EQKKTKMIKKCRDPIWNEEFQF 436
E+K+TK IK +P+WNE F+F
Sbjct: 35 EKKRTKTIKNSINPVWNETFEF 56
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.004
Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 21/117 (17%)
Query: 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTL-------NPEWNED 315
L + +I A L +++FG Y + + K T NP WNE
Sbjct: 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSH--------KQSTPVDRDGGTNPTWNET 52
Query: 316 FKLTVKDPETQ----VLQLHVYDWEKVGTHDKL-GMQVVPLRSLTPNETKELTLDLV 367
+ + + Q L + VY E+ DKL G VPL+ L + L +
Sbjct: 53 LRFPLDERLLQQGRLALTIEVYC-ERPSLGDKLIGEVRVPLKDLLDGASPAGELRFL 108
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 37.2 bits (86), Expect = 0.004
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 395 AKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHI----- 449
AKD G ++PY V +K+TK I + +P+WNE+F F+ + + K+ +
Sbjct: 15 AKDKTGT--SDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDD 72
Query: 450 EVKSK-RRGLRLRSKESLG 467
++KS+ ++ S + LG
Sbjct: 73 DIKSRLKQKFTRESDDFLG 91
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 505 | |||
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 100.0 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.96 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.83 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.82 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.82 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.81 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.8 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.79 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.79 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.78 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.78 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.78 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.78 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.78 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.77 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.77 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.77 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.76 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.76 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.76 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.76 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.76 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.75 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.75 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.75 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.75 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.75 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.74 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.74 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.74 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.74 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.74 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.74 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.74 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.74 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.74 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.73 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.73 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.73 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.73 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.73 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.73 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.73 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.72 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.72 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.72 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.72 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.71 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.71 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.71 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.71 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.71 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.71 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.71 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.71 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.71 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.71 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.71 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.7 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.7 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.7 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.7 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.7 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.7 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.69 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.69 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.69 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.69 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.68 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.68 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.68 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.68 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.68 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.68 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.67 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.67 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.67 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.67 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.67 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.67 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.67 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.67 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.67 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.67 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.67 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.66 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.66 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.66 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.66 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.66 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.65 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.65 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.65 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.65 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.65 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.65 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.65 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.65 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.64 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.64 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.64 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.64 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.64 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.64 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.64 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.64 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.64 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.64 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.64 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.63 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.63 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.63 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.63 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.63 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.63 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.63 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.63 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.62 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.62 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.62 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.62 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.62 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.61 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.61 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.61 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.61 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.6 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.6 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.6 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.6 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.59 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.59 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.59 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.59 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.59 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.59 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.58 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.58 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.58 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.58 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.57 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.57 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.57 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.57 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.55 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.55 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.55 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.55 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.55 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.55 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.54 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.54 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.52 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.52 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.52 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.52 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.52 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.52 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.52 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.52 | |
| PLN03008 | 868 | Phospholipase D delta | 99.51 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.51 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.51 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.51 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.5 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.5 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.49 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.49 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.48 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.48 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.48 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.48 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.47 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.47 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.47 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.47 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.46 | |
| PLN03008 | 868 | Phospholipase D delta | 99.46 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.46 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.46 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.44 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.44 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.43 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.43 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.42 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.41 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.4 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.4 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.39 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.38 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.38 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.35 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.34 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.32 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.3 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.28 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.28 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.25 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.25 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.2 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.17 | |
| PF10296 | 91 | DUF2404: Putative integral membrane protein conser | 99.15 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.13 | |
| PLN02270 | 808 | phospholipase D alpha | 99.09 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.06 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.05 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.05 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.04 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.01 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.93 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.93 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 98.91 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.91 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.87 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 98.87 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.86 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.8 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.79 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.73 | |
| PLN02270 | 808 | phospholipase D alpha | 98.73 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.68 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 98.67 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.67 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.62 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.61 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.6 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.52 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.5 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.48 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.43 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.38 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.38 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.34 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 98.12 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.04 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.0 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.98 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.95 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.87 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.78 | |
| KOG3532 | 1051 | consensus Predicted protein kinase [General functi | 97.66 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 97.54 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 97.37 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 97.31 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 97.24 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.19 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 97.0 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 96.82 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 96.76 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 96.07 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 95.8 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 95.62 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 95.59 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 95.35 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 95.06 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 94.93 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 94.8 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 94.62 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 94.25 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 94.1 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 94.05 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 93.75 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 93.58 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 93.1 | |
| PF15625 | 168 | CC2D2AN-C2: CC2D2A N-terminal C2 domain | 92.85 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 92.5 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 91.91 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 91.35 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 91.19 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 90.66 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 90.48 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 90.23 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 90.16 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 89.12 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 89.08 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 87.47 | |
| PTZ00447 | 508 | apical membrane antigen 1-like protein; Provisiona | 86.76 | |
| cd08694 | 196 | C2_Dock-A C2 domains found in Dedicator Of CytoKin | 86.2 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 85.61 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 85.19 | |
| PF15625 | 168 | CC2D2AN-C2: CC2D2A N-terminal C2 domain | 83.62 | |
| PF11618 | 107 | DUF3250: Protein of unknown function (DUF3250); In | 81.0 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 80.03 |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-64 Score=528.46 Aligned_cols=478 Identities=26% Similarity=0.462 Sum_probs=391.8
Q ss_pred cchhhhhhhhccchhhhHHHHHhheeeeeecccccCCccccCC-CCccChhhHhhhCCCCCCceeCCCCCchHHHHHHHH
Q 038990 2 GLLSFLLGIFGFGIGIPIGFLIAFFIFVHSDATEITDPIIRPN-DHEFDTSSVLDVFPEIPLWVKHPDYDRIDWLNKFVS 80 (505)
Q Consensus 2 ~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~w~~~~d~E~~~WlN~~l~ 80 (505)
|++||++|++||+++.++.+++.. +++|++..++.+.-+|.+ ++++..++++ .|+|++||||.+|+
T Consensus 165 ~v~Swifg~~~fs~~slffii~~~-~~vY~~~~~rv~rnird~v~~~~~~ek~~------------nd~ESveWLNtfL~ 231 (1227)
T COG5038 165 SVASWIFGYLGFSFASLFFIILVT-MYVYRTCIKRVRRNIRDLVQQELSEEKLE------------NDYESVEWLNTFLQ 231 (1227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------cchhHHHHHHHHHH
Confidence 578999999999999887665554 467777554433444443 2222222222 69999999999999
Q ss_pred hhChhhHHHHHHHHHHHHHHHHHhccCcceeeEEEEeEEecCCCCCeEeEEEEEEc-CCceEEEeeeEEEe---------
Q 038990 81 DLWPYLDKAICSTARSNLEPIFAEYIGKYCIRSVDFKTLTLGTLPPIIHGIKVCET-NENELILEPALRWA--------- 150 (505)
Q Consensus 81 ~~Wp~~~~~~~~~i~~~~~~~l~~~~p~~~i~~i~~~~~~lG~~~P~i~~v~~~~~-~~~~~~ld~~~~~~--------- 150 (505)
++||.++|.+++.|.+++|+.|+++.|+| |+++++++||||++||||.+||.|+. ..|.+.||++++|+
T Consensus 232 KfW~i~eP~iSqqV~dqvn~~la~~iPsF-I~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~~sftP~d~sD~t~ 310 (1227)
T COG5038 232 KFWPIIEPSISQQVVDQVNQQLAEAIPSF-IDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDISDVTA 310 (1227)
T ss_pred hheeccChHHHHHHHHHHHHHHHhhcchh-hhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEeeeccCccchhhhhh
Confidence 99999999999999999999999999999 99999999999999999999999985 77899999999994
Q ss_pred ------CCCcEEEEEEE---ec-eEEEEEEEEEEEEEEEEEEeeecCCCCCccceEEEEecCCceEEEEeeEec-----c
Q 038990 151 ------GNPNITLALKF---FS-LQITVQLLDVQIRAAPRIVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLVG-----G 215 (505)
Q Consensus 151 ------~~~~i~l~~~~---~~-~~~~v~v~~l~~~g~~rv~l~pl~~~~P~~~~~~~sf~~~P~~d~~~~~~g-----~ 215 (505)
-|++|.|.++. ++ +++||.|+|+.|.|++|++++ |++.+|++..+.++|++.|++||.++|+| .
T Consensus 311 ~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~-L~~~~PfiktV~~~Lle~Pe~df~l~Plg~~~~g~ 389 (1227)
T COG5038 311 TSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGGDFFGV 389 (1227)
T ss_pred HHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEE-ecCCCcceeEEEEEEecCcceeEEEEEcCCCccce
Confidence 35677887765 44 789999999999999999999 99999999999999999999999999987 4
Q ss_pred ccccchhhHHHHHHHHHHHHHhhccCCCCcccccccCCcCCCcCCeEEEEEEEeeccCccccC--CCCCCCcEEEEEECC
Q 038990 216 DMMAIPGLYQFIQETIRNQISALYLWPQPLEIPILDGSLGAIKKPVGILHVKVIRAIRLLKMD--IFGASDPYVQLSLSG 293 (505)
Q Consensus 216 ~i~~iP~l~~~i~~~i~~~l~~~~v~P~~~~~~l~~~~~~~~~~~~g~L~V~v~~a~~L~~~d--~~g~~dpyv~v~l~~ 293 (505)
||+++|||.+||+++|...+++|+++|+++++++.....+....+.|+|.|+|.+|++|...+ ..+..|||+.+...+
T Consensus 390 dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~ 469 (1227)
T COG5038 390 DIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSD 469 (1227)
T ss_pred eEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccccCCeeEEEEEEEeeccCcccccccccCCCCceEEEEecc
Confidence 789999999999999999999999999999999987776567889999999999999999998 578999999999765
Q ss_pred eecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcccEEEEEECccCCCCCeeE-EEEeccccCCC
Q 038990 294 ERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKE-LTLDLVKNTNP 372 (505)
Q Consensus 294 ~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~-~~l~l~~~~~~ 372 (505)
... .||++++++.||+|||+|++.+.. -++.|.+++||.+....|+.+|++.++|..|.....+. ...++.+...+
T Consensus 470 r~~--gkT~v~~nt~nPvwNEt~Yi~lns-~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~ 546 (1227)
T COG5038 470 RVI--GKTRVKKNTLNPVWNETFYILLNS-FTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKN 546 (1227)
T ss_pred ccC--CccceeeccCCccccceEEEEecc-cCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeeeccCcc
Confidence 543 499999999999999999999965 46889999999999999999999999999888664332 12222222111
Q ss_pred CCcc------------ccccccc----cc---ceEEEEEeeecCCCCC--CCCCCEEEEEEcCeEE-EeecccCCCCCcc
Q 038990 373 NDPQ------------DKKFERK----ES---EVGKATEYGAKDLEGK--HHNNPYAVVICRGEQK-KTKMIKKCRDPIW 430 (505)
Q Consensus 373 ~~~~------------~~~~~g~----~~---~~a~v~v~~a~~L~~~--~~~dpyv~v~~~~~~~-kT~v~~~t~nP~w 430 (505)
.... .....|. ++ .++.+++.++++|... ....-+++++++.+.. .|+..+.+.+|.|
T Consensus 547 vGrL~yDl~ffp~~e~k~~~~~s~e~~ed~n~GI~k~tl~~~~~l~~~~~~~~~~~a~l~~~~keV~st~~~k~t~~~~w 626 (1227)
T COG5038 547 VGRLTYDLRFFPVIEDKKELKGSVEPLEDSNTGILKVTLREVKALDELSSKKDNKSAELYTNAKEVYSTGKLKFTNHPSW 626 (1227)
T ss_pred ceEEEEeeeeecccCCccccccccCCcccCCcceeEEEeeccccccCccccccceeEEEEecceEEeccceeeeccCCce
Confidence 1000 0001111 11 3468999999999763 2334448999988775 6688999999999
Q ss_pred CceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCccEEEEEeccccccCC-EEeEEEEeCCCCCceEEEEEEEEeC
Q 038990 431 NEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNG-RLKEKYHLINSKNGAVQVEIKWKAI 505 (505)
Q Consensus 431 ne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~-~~~~~~~L~~~~~G~i~l~~~~~~~ 505 (505)
|+++.-.+.+. .+..+.+.++|.. ..+.+|....+|.+++... .-..||++. +++|+|.++..|+||
T Consensus 627 n~~~~~~v~~~-~ns~~~~~~~d~~------~g~~i~~~~~~l~~li~~t~dt~~~f~~~-~~kg~I~~t~~W~Pi 694 (1227)
T COG5038 627 NLQYNVLVTDR-KNSSIKVVTFDVQ------SGKVIATEGSTLPDLIDRTLDTFLVFPLR-NPKGRIFITNYWKPI 694 (1227)
T ss_pred eeecceEeccC-cceeEEEEecccc------cCceeccccccchHhhhccccceEEEEcC-CCcceEEEEecccee
Confidence 99999999876 4567888888764 3478999999999988865 446899998 569999999999997
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-28 Score=246.56 Aligned_cols=226 Identities=29% Similarity=0.414 Sum_probs=184.3
Q ss_pred CCcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeec--CCCCEEEEEEE
Q 038990 256 AIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKD--PETQVLQLHVY 333 (505)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~--~~~~~L~v~v~ 333 (505)
.++.....|.|+|++|++|+.+|..|.+||||++++.+++..+.+|++.++|+||.|||+|.|.+.. .....|.+.||
T Consensus 161 ~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~ 240 (421)
T KOG1028|consen 161 QYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVY 240 (421)
T ss_pred EecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEE
Confidence 3566789999999999999999977889999999999988777899999999999999999999652 35789999999
Q ss_pred EcCCCCCCcccEEEEEECccCCCCCeeEEEEeccccCCCCCcccccccccccce------------EEEEEeeecCCCCC
Q 038990 334 DWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNPNDPQDKKFERKESEV------------GKATEYGAKDLEGK 401 (505)
Q Consensus 334 d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~g~~~~~------------a~v~v~~a~~L~~~ 401 (505)
|+|++++|++||++.++|..+.......+|.++........... | |+ .+|.|.+|++|...
T Consensus 241 ~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~----g---el~~sL~Y~p~~g~ltv~v~kar~L~~~ 313 (421)
T KOG1028|consen 241 DFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELA----G---ELLLSLCYLPTAGRLTVVVIKARNLKSM 313 (421)
T ss_pred ecCCcccccEEEEEEecCccccccccceeeeccccccCCccccc----c---eEEEEEEeecCCCeEEEEEEEecCCCcc
Confidence 99999999999999999999988877788888876433222111 2 33 38999999999863
Q ss_pred ---CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCCC-eEEEEEEEccCCccCCCCCccEEEEEe
Q 038990 402 ---HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKE-KIHIEVKSKRRGLRLRSKESLGYVDIN 472 (505)
Q Consensus 402 ---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~-~l~i~V~d~~~~~~~~~d~~lG~~~i~ 472 (505)
+.+||||++++.. +++||.+.+++.||+|||+|.|.+....+.+ .+.|+|||++. ++.+++||++.+.
T Consensus 314 ~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~---~~~~~~iG~~~lG 390 (421)
T KOG1028|consen 314 DVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDT---LGSNDLIGRCILG 390 (421)
T ss_pred cCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEccc---ccccceeeEEEec
Confidence 5889999999843 3459999999999999999999997655554 79999999995 7888899999888
Q ss_pred ccccccCCEEeEEEEeCCCCC
Q 038990 473 LHDVLHNGRLKEKYHLINSKN 493 (505)
Q Consensus 473 L~~l~~~~~~~~~~~L~~~~~ 493 (505)
... .+....+|.++.+..+
T Consensus 391 ~~~--~~~~~~hW~~m~~~p~ 409 (421)
T KOG1028|consen 391 SDS--TGEEVRHWQEMLNSPR 409 (421)
T ss_pred CCC--CchHHHHHHHHHhCcc
Confidence 765 2223345655555443
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-20 Score=189.17 Aligned_cols=235 Identities=20% Similarity=0.268 Sum_probs=179.1
Q ss_pred EEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCC
Q 038990 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTH 341 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d 341 (505)
..|.|+|.+|+||++.+..|.+||||.+.++.+.+ .||.++.+++.|.|.|+|+|.+.. .-+.|.|-|||.| +++|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v--~RT~tv~ksL~PF~gEe~~~~iP~-~F~~l~fYv~D~d-~~~D 80 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEV--CRTATVEKSLCPFFGEEFYFEIPR-TFRYLSFYVWDRD-LKRD 80 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhh--hhhhhhhhhcCCccccceEEecCc-ceeeEEEEEeccc-cccc
Confidence 46899999999999999999999999999997664 699999999999999999999953 4578999999999 9999
Q ss_pred cccEEEEEECccCCCCCeeEEEEeccccCCCCCcccccccc--cccce-----EEEEEeeecCCCC--CCCCCCEEEEEE
Q 038990 342 DKLGMQVVPLRSLTPNETKELTLDLVKNTNPNDPQDKKFER--KESEV-----GKATEYGAKDLEG--KHHNNPYAVVIC 412 (505)
Q Consensus 342 ~~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~g--~~~~~-----a~v~v~~a~~L~~--~~~~dpyv~v~~ 412 (505)
+.||.+.+.-.++....+.+-|..|.. .++.....++..- +.-|. ....+++++++.. ++.+|||+++..
T Consensus 81 ~~IGKvai~re~l~~~~~~d~W~~L~~-VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~~~~~dp~~~v~~ 159 (800)
T KOG2059|consen 81 DIIGKVAIKREDLHMYPGKDTWFSLQP-VDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPIINGQCDPFARVTL 159 (800)
T ss_pred cccceeeeeHHHHhhCCCCccceeccc-cCCChhhceeEEEEEEeccccCCCcchhhhhhhcccCceeCCCCCcceEEee
Confidence 999999999999988777777887754 2222211111100 00011 1334445555432 467999999998
Q ss_pred cCeE----EEeecccCCCCCccCceEEEEeeCC-----------CC---CCeEEEEEEEccCCccCCCCCccEEEEEecc
Q 038990 413 RGEQ----KKTKMIKKCRDPIWNEEFQFDFEEA-----------PL---KEKIHIEVKSKRRGLRLRSKESLGYVDINLH 474 (505)
Q Consensus 413 ~~~~----~kT~v~~~t~nP~wne~f~f~v~~~-----------~~---~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L~ 474 (505)
.+.. ++|+++++|.+|.|+|.|.|.+... +. .-.|.+++|++... ...+.++|++.+++.
T Consensus 160 ~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~--~~~~~FlGevrv~v~ 237 (800)
T KOG2059|consen 160 CGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNL--VINDVFLGEVRVPVD 237 (800)
T ss_pred cccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhh--hhhhhhceeEEeehh
Confidence 6644 4999999999999999999998754 00 12678889985532 455999999999999
Q ss_pred ccccCCEEeEEEEeCCC----------CCceEEEEEEEE
Q 038990 475 DVLHNGRLKEKYHLINS----------KNGAVQVEIKWK 503 (505)
Q Consensus 475 ~l~~~~~~~~~~~L~~~----------~~G~i~l~~~~~ 503 (505)
.+........||.|... .-|.+++.+.|.
T Consensus 238 ~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 238 VLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred hhhhccCccceEEEecCCCcccCCCCCCccceeeeEEee
Confidence 98866667899999632 147888888764
|
|
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-19 Score=152.29 Aligned_cols=107 Identities=24% Similarity=0.341 Sum_probs=92.1
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECC----eecceeeeeeeCCCCCCeEceeEEEEeecC---CCCEEEEEEEEc
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSG----ERIPAKKTSVKMKTLNPEWNEDFKLTVKDP---ETQVLQLHVYDW 335 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~----~~~~~~~T~~~~~t~nP~wne~f~~~v~~~---~~~~L~v~v~d~ 335 (505)
.|+|+|++|++|+..+ .|.+||||++++.+ .+..+++|+++++|+||+|||+|.|.+... ....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999988 49999999999842 333446899999999999999999999742 346799999999
Q ss_pred CCCCCCcccEEEEEECccCCCCCeeEEEEeccccC
Q 038990 336 EKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNT 370 (505)
Q Consensus 336 d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~~ 370 (505)
|..++|++||++.++++++..++....|++|.+..
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~ 114 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRI 114 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCcc
Confidence 98888999999999999999998888999986643
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.9e-20 Score=152.77 Aligned_cols=107 Identities=19% Similarity=0.271 Sum_probs=89.9
Q ss_pred CCcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECC-eecceeeeeeeCCCCCCeEceeEEEEeec--CCCCEEEEEE
Q 038990 256 AIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSG-ERIPAKKTSVKMKTLNPEWNEDFKLTVKD--PETQVLQLHV 332 (505)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~-~~~~~~~T~~~~~t~nP~wne~f~~~v~~--~~~~~L~v~v 332 (505)
.+....|.|+|+|++|+||+ . .|.+||||++++.+ .+..+++|+++++|+||+|||+|.|.+.. .....|.++|
T Consensus 8 ~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V 84 (118)
T cd08677 8 SYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTL 84 (118)
T ss_pred EEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEE
Confidence 35567799999999999998 3 46799999999975 34446799999999999999999999864 3467899999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCCeeEEEEe
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNETKELTLD 365 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~ 365 (505)
||+|+++++++||++.++++++..+...+.|.+
T Consensus 85 ~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~ 117 (118)
T cd08677 85 RCCDRFSRHSTLGELRLKLADVSMMLGAAQWVD 117 (118)
T ss_pred EeCCCCCCCceEEEEEEccccccCCccccchhc
Confidence 999999999999999999998866655555654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-19 Score=155.42 Aligned_cols=114 Identities=27% Similarity=0.367 Sum_probs=98.4
Q ss_pred CeEEEEEEEeeccCccccC-CCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEE-Ec
Q 038990 260 PVGILHVKVIRAIRLLKMD-IFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVY-DW 335 (505)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~-d~ 335 (505)
..|.|.|+|++|+||+.++ ..|.+||||++++.+.+ ..++||+++++|+||+|||+|.|.+. ..+..|.++|| |+
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~ 105 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDY 105 (146)
T ss_pred CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCC
Confidence 3589999999999999874 56889999999996543 34679999999999999999999997 67789999999 68
Q ss_pred CCCCCCcccEEEEEECccCCCCCeeEEEEeccccCCCCC
Q 038990 336 EKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNPND 374 (505)
Q Consensus 336 d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~ 374 (505)
+..+++++||++.++|+++..+.....|++|.....+.+
T Consensus 106 ~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~~~~ 144 (146)
T cd04028 106 GRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSSLVD 144 (146)
T ss_pred CCCCCCceEEEEEEEcccccCCCCceeEEecCCcccccC
Confidence 888899999999999999987777788999987665544
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.9e-19 Score=147.42 Aligned_cols=110 Identities=21% Similarity=0.359 Sum_probs=95.0
Q ss_pred EEEEEeeecCCCCC--CCCCCEEEEEEcCeEEEeecccC-CCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCC
Q 038990 388 GKATEYGAKDLEGK--HHNNPYAVVICRGEQKKTKMIKK-CRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKE 464 (505)
Q Consensus 388 a~v~v~~a~~L~~~--~~~dpyv~v~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~ 464 (505)
..|+|.+|++++.. +.+||||++++++.+++|+++++ +.||+|||+|+|.+.+. ...|.|+|||++. +++|+
T Consensus 4 L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~--~~~l~~~V~d~d~---~~~dd 78 (121)
T cd04016 4 LSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG--VDSIYIEIFDERA---FTMDE 78 (121)
T ss_pred EEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC--CcEEEEEEEeCCC---CcCCc
Confidence 37899999988653 68999999999999999999876 79999999999999764 3579999999985 78899
Q ss_pred ccEEEEEecc-ccccCCEEeEEEEeCC----CCCceEEEEEEE
Q 038990 465 SLGYVDINLH-DVLHNGRLKEKYHLIN----SKNGAVQVEIKW 502 (505)
Q Consensus 465 ~lG~~~i~L~-~l~~~~~~~~~~~L~~----~~~G~i~l~~~~ 502 (505)
+||++.+++. .+..+...++||+|.+ ...|+|+|+++|
T Consensus 79 ~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 79 RIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred eEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 9999999996 5666666899999986 346999999986
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-19 Score=151.18 Aligned_cols=105 Identities=31% Similarity=0.398 Sum_probs=91.8
Q ss_pred eEEEEEEEeeccCccccCCCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEe-e--cCCCCEEEEEEEEc
Q 038990 261 VGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTV-K--DPETQVLQLHVYDW 335 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v-~--~~~~~~L~v~v~d~ 335 (505)
.+.|.|+|++|+||+.++ .+.+||||++++.+.. ..+++|++++++.||.|||+|.|.+ . +.....|.++|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 588999999999999999 8999999999997542 3457899999999999999999987 2 33467899999999
Q ss_pred CCCCCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 336 EKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 336 d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
|..+++++||++.++|+++..++....|++|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999999988766777765
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-18 Score=147.27 Aligned_cols=103 Identities=18% Similarity=0.344 Sum_probs=89.9
Q ss_pred eEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCC-CCCCeEceeEEEEeecCCCCEEEEEEEEcCCCC
Q 038990 261 VGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMK-TLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVG 339 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~-t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~ 339 (505)
.|.|.|+|++|++++..+ .|++||||++.+++.+ .+|+++.+ +.||+|||+|.|.+.+. ...|.|+|||+|.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~---~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAV---YETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEE---EEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCc
Confidence 489999999999988777 7999999999998865 48888765 89999999999999653 468999999999999
Q ss_pred CCcccEEEEEECc-cCCCCCeeEEEEeccc
Q 038990 340 THDKLGMQVVPLR-SLTPNETKELTLDLVK 368 (505)
Q Consensus 340 ~d~~lG~~~i~l~-~l~~~~~~~~~l~l~~ 368 (505)
+|++||++.+++. .+..++..+.|++|..
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~ 105 (121)
T cd04016 76 MDERIAWTHITIPESVFNGETLDDWYSLSG 105 (121)
T ss_pred CCceEEEEEEECchhccCCCCccccEeCcC
Confidence 9999999999996 5777777788998854
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.1e-19 Score=151.19 Aligned_cols=99 Identities=41% Similarity=0.719 Sum_probs=90.8
Q ss_pred CCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCC
Q 038990 259 KPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKV 338 (505)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~ 338 (505)
...|.|+|+|++|.||..+|..++|||||.+.+++++. +|+++.+++||+|||.|.|.+.++ ...|++.|||+|.+
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~l---kT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~f 78 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKL---KTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTF 78 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeee---eeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCC
Confidence 46799999999999999999889999999999999884 888999999999999999999885 57899999999999
Q ss_pred CCCcccEEEEEECccCCCCCeeE
Q 038990 339 GTHDKLGMQVVPLRSLTPNETKE 361 (505)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~~~~~~ 361 (505)
++||++|.++|++..+.......
T Consensus 79 s~dD~mG~A~I~l~p~~~~~~~~ 101 (168)
T KOG1030|consen 79 SSDDFMGEATIPLKPLLEAQKMD 101 (168)
T ss_pred CcccccceeeeccHHHHHHhhhh
Confidence 99999999999999988765544
|
|
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.6e-19 Score=149.87 Aligned_cols=110 Identities=35% Similarity=0.417 Sum_probs=94.6
Q ss_pred CcCCeEEEEEEEeeccCccccCCC-CCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeec--CCCCEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIF-GASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKD--PETQVLQLH 331 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~--~~~~~L~v~ 331 (505)
+....+.|.|+|++|+||++++.. |.+||||++++.+.. ..+++|+++++++||.|||+|.|.+.. .....|.++
T Consensus 10 y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~ 89 (125)
T cd08393 10 YDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLS 89 (125)
T ss_pred EECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEE
Confidence 445668999999999999999975 889999999996543 334699999999999999999999863 245689999
Q ss_pred EEEcCCCCCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 332 VYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 332 v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
|||++..+++++||++.++|.++..+.....|++|
T Consensus 90 V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 90 VWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 99999999999999999999999877777778775
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-18 Score=147.01 Aligned_cols=102 Identities=25% Similarity=0.366 Sum_probs=91.8
Q ss_pred EEEEEEeeccC---ccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCC
Q 038990 263 ILHVKVIRAIR---LLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVG 339 (505)
Q Consensus 263 ~L~V~v~~a~~---L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~ 339 (505)
.|.|+|++|+| |+.+|..|.+||||++++++++ .||+++++++||+|||+|.|.+.++. ..|.++|||++..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~---~rTk~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKW---VRTRTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEE---eEcCcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCCcc
Confidence 38999999999 8889999999999999998775 48999999999999999999997654 58999999998863
Q ss_pred ------CCcccEEEEEECccCCCCCeeEEEEeccc
Q 038990 340 ------THDKLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 340 ------~d~~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
+|++||++.++++.+..+.....|++|..
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~ 111 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLS 111 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence 89999999999999999888888998864
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-18 Score=148.66 Aligned_cols=102 Identities=30% Similarity=0.433 Sum_probs=90.4
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeec-----CCCCEEEEEEEEcCCC
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKD-----PETQVLQLHVYDWEKV 338 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~-----~~~~~L~v~v~d~d~~ 338 (505)
++|+|++|+||+.++..|.+||||++++++.+ ++|+++++++||+|||+|.|.+.. +..+.|.++|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~---~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEK---YSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCee---eeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 57999999999999988999999999998654 589999999999999999999976 3567899999999999
Q ss_pred CCCcccEEEEEECccCC--CCCeeEEEEeccc
Q 038990 339 GTHDKLGMQVVPLRSLT--PNETKELTLDLVK 368 (505)
Q Consensus 339 ~~d~~lG~~~i~l~~l~--~~~~~~~~l~l~~ 368 (505)
++|++||++.++++++. .+.....|++|..
T Consensus 78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~ 109 (126)
T cd08682 78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLES 109 (126)
T ss_pred CCCceeEEEEEEHHHhhccCCCcccEEEECcC
Confidence 99999999999999987 5556678888864
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-18 Score=147.23 Aligned_cols=110 Identities=25% Similarity=0.413 Sum_probs=94.3
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCC----CCCCeEEEEEEEccCCccCC
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEA----PLKEKIHIEVKSKRRGLRLR 461 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~----~~~~~l~i~V~d~~~~~~~~ 461 (505)
+|+|++|+||+.. +.+||||++++++.+++|++++++.||+|||.|.|.+... .....|.++|||++. ++
T Consensus 2 ~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~---~~ 78 (126)
T cd08682 2 QVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL---LG 78 (126)
T ss_pred EEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc---cC
Confidence 6899999999753 5899999999999889999999999999999999999762 124589999999984 67
Q ss_pred CCCccEEEEEeccccc--cCCEEeEEEEeCCC------CCceEEEEEE
Q 038990 462 SKESLGYVDINLHDVL--HNGRLKEKYHLINS------KNGAVQVEIK 501 (505)
Q Consensus 462 ~d~~lG~~~i~L~~l~--~~~~~~~~~~L~~~------~~G~i~l~~~ 501 (505)
++++||++.++|+++. .+....+||+|.+. ..|+|+|+++
T Consensus 79 ~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 79 LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 8999999999999998 45567899999742 3699999875
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-18 Score=147.98 Aligned_cols=110 Identities=32% Similarity=0.426 Sum_probs=95.2
Q ss_pred CcCCeEEEEEEEeeccCccccCC-CCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDI-FGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLH 331 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~-~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~ 331 (505)
+....|.|.|+|++|+||+.++. .|.+||||++++.+.. ..++||+++++++||.|||+|.|.+... ....|.++
T Consensus 10 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~ 89 (125)
T cd04029 10 YDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS 89 (125)
T ss_pred EECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 45677999999999999998875 4789999999996543 3457899999999999999999998642 35689999
Q ss_pred EEEcCCCCCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 332 VYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 332 v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
|||++..+++++||++.+++.++........|++|
T Consensus 90 V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 90 VWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred EEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 99999999999999999999999988888888876
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-18 Score=147.72 Aligned_cols=111 Identities=31% Similarity=0.545 Sum_probs=97.0
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHVYD 334 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v~d 334 (505)
+....|.|.|+|++|+||+.++..|.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.++|||
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d 90 (124)
T cd08387 11 YDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYD 90 (124)
T ss_pred ECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEE
Confidence 4556799999999999999999889999999999965433457999999999999999999998643 35689999999
Q ss_pred cCCCCCCcccEEEEEECccCCCCCeeEEEEecc
Q 038990 335 WEKVGTHDKLGMQVVPLRSLTPNETKELTLDLV 367 (505)
Q Consensus 335 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~ 367 (505)
++..+++++||++.++++++..+.....|++|.
T Consensus 91 ~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 91 FDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 999999999999999999999887888898864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.77 E-value=4e-18 Score=144.04 Aligned_cols=103 Identities=33% Similarity=0.553 Sum_probs=94.2
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCc
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHD 342 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~ 342 (505)
+++|+|++|++|+..+..+.+||||++++++.. .+|+++++|.||.|||+|.|.+.+...+.|.++|||++..++|+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~ 77 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEK---YKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE 77 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEe---EecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 478999999999999988999999999998654 58999999999999999999998766789999999999989999
Q ss_pred ccEEEEEECccCCCCCeeEEEEeccc
Q 038990 343 KLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 343 ~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
+||++.++++++..+.....|++|.+
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~ 103 (116)
T cd08376 78 FIGRCEIDLSALPREQTHSLELELED 103 (116)
T ss_pred eEEEEEEeHHHCCCCCceEEEEEccC
Confidence 99999999999999888899998854
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.4e-18 Score=143.19 Aligned_cols=110 Identities=26% Similarity=0.450 Sum_probs=98.0
Q ss_pred EEEEEeeecCCCCC---------CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEGK---------HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~~---------~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~ 458 (505)
.+|+|.+|++|+.. +.+||||++++++..++|++++++.||+|||.|.|.+... ..+.|.|+|||++.
T Consensus 3 l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~-~~~~l~i~v~d~~~-- 79 (121)
T cd08391 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEV-PGQELEIELFDEDP-- 79 (121)
T ss_pred EEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCC-CCCEEEEEEEecCC--
Confidence 36899999999753 4689999999999888999999999999999999999764 34689999999984
Q ss_pred cCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEE
Q 038990 459 RLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKW 502 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~ 502 (505)
. ++++||++.++++++..++..++||+|.+..+|+|+++++|
T Consensus 80 -~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 80 -D-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred -C-CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence 4 88999999999999998777789999998889999999998
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.76 E-value=6e-18 Score=143.62 Aligned_cols=104 Identities=32% Similarity=0.491 Sum_probs=92.5
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcc
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDK 343 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~ 343 (505)
|+|+|++|++|+..+..+.+||||++++++.....++|++++++.||.|||+|.|.+.....+.|.|+|||+|.. +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999998888999999999975433456999999999999999999999766567899999999988 8999
Q ss_pred cEEEEEECccCCCCCeeEEEEeccc
Q 038990 344 LGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 344 lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
||++.++++++..+.....|++|..
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~~ 105 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLNP 105 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECCC
Confidence 9999999999999888888998754
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.7e-18 Score=145.30 Aligned_cols=111 Identities=28% Similarity=0.370 Sum_probs=92.9
Q ss_pred CcCCeEEEEEEEeeccCccccCCC-CCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEE-ee--cCCCCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIF-GASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLT-VK--DPETQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~-v~--~~~~~~L~v~v 332 (505)
+....+.|+|+|++|+||+..+.. +.+||||++++.+....++||+++++++||.|||+|.|. +. +.....|.++|
T Consensus 11 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V 90 (128)
T cd08388 11 YNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAV 90 (128)
T ss_pred EECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEE
Confidence 455678999999999999998876 889999999997655445699999999999999999994 43 22345799999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCC--CeeEEEEecc
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPN--ETKELTLDLV 367 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~--~~~~~~l~l~ 367 (505)
||+|..++|++||++.++|+++... +....|+++.
T Consensus 91 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 91 LSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 9999999999999999999998765 4566787764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.7e-18 Score=145.39 Aligned_cols=110 Identities=35% Similarity=0.482 Sum_probs=95.8
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHVYD 334 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v~d 334 (505)
+....+.|.|+|++|+||+.++..+.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d 90 (124)
T cd08385 11 YDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYD 90 (124)
T ss_pred EeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEe
Confidence 4456789999999999999999889999999999976544457999999999999999999998642 35689999999
Q ss_pred cCCCCCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 335 WEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 335 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
++..+++++||++.++++++..+.....|+++
T Consensus 91 ~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 91 FDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred CCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 99999999999999999999887777788775
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.3e-18 Score=142.50 Aligned_cols=95 Identities=33% Similarity=0.493 Sum_probs=84.3
Q ss_pred EEEEEEEeeccCccccCCC-CCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecC---CCCEEEEEEEEcCC
Q 038990 262 GILHVKVIRAIRLLKMDIF-GASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP---ETQVLQLHVYDWEK 337 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~---~~~~L~v~v~d~d~ 337 (505)
|+|+|+|++|++|+..+.. +.+||||++++.+......+|+++++++||.|||+|.|.+... ..+.|.++|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 7899999999999999987 8999999999965433346999999999999999999988644 35689999999999
Q ss_pred CCCCcccEEEEEECccCCC
Q 038990 338 VGTHDKLGMQVVPLRSLTP 356 (505)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~ 356 (505)
.++|++||++.++++++..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~ 99 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE 99 (111)
T ss_pred CCCCCcceEEEEEHHHHhc
Confidence 9999999999999999983
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-17 Score=141.09 Aligned_cols=112 Identities=21% Similarity=0.387 Sum_probs=95.9
Q ss_pred EEEEEeeecCCCCCCCCCCEEEEEEcCeE-EEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCcc
Q 038990 388 GKATEYGAKDLEGKHHNNPYAVVICRGEQ-KKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESL 466 (505)
Q Consensus 388 a~v~v~~a~~L~~~~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~l 466 (505)
.+|+|++|+||+..+.+||||++++++.. .+|++ +++.||.|||+|.|.+..+. .+.++|.|+|++. .+++++|
T Consensus 6 L~V~Vi~A~~L~~~~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~-~~~l~v~v~d~~~---~~~d~~i 80 (126)
T cd08400 6 LQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPD-VNSFTISLSNKAK---RSKDSEI 80 (126)
T ss_pred EEEEEEEeeCCCCCCCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCC-cCEEEEEEEECCC---CCCCCeE
Confidence 47999999999988899999999998755 58887 46899999999999876542 2479999999874 6789999
Q ss_pred EEEEEeccccccCCEEeEEEEeCCC------CCceEEEEEEEEe
Q 038990 467 GYVDINLHDVLHNGRLKEKYHLINS------KNGAVQVEIKWKA 504 (505)
Q Consensus 467 G~~~i~L~~l~~~~~~~~~~~L~~~------~~G~i~l~~~~~~ 504 (505)
|.+.++|+++..+...+.||+|... ..|+|+|+++|.+
T Consensus 81 G~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 81 AEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred EEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 9999999999888778999999753 2599999999975
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.6e-18 Score=144.26 Aligned_cols=110 Identities=18% Similarity=0.161 Sum_probs=93.2
Q ss_pred CCcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCee---cceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEE
Q 038990 256 AIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER---IPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQL 330 (505)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~---~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v 330 (505)
.+....+.|.|+|++|+||+..+..|.+||||++++.+.. ..+++|+++++++||+|||+|.|.+... ....|.+
T Consensus 8 ~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~ 87 (124)
T cd08680 8 RYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQV 87 (124)
T ss_pred EECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEE
Confidence 3556778999999999999999888899999999997655 2467999999999999999999998642 4679999
Q ss_pred EEEEcCCCCCCcccEEEEEECccCCCCC-eeEEEEe
Q 038990 331 HVYDWEKVGTHDKLGMQVVPLRSLTPNE-TKELTLD 365 (505)
Q Consensus 331 ~v~d~d~~~~d~~lG~~~i~l~~l~~~~-~~~~~l~ 365 (505)
+|||++..+++++||++.++|+++.... ....|++
T Consensus 88 ~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~ 123 (124)
T cd08680 88 DVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYN 123 (124)
T ss_pred EEEeCCCCCceeEEEEEEEEhhhccCCCcccccccc
Confidence 9999999999999999999999996553 3445554
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-17 Score=139.26 Aligned_cols=110 Identities=20% Similarity=0.304 Sum_probs=98.4
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCc
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKES 465 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~ 465 (505)
+|+|++|++|+.. +.+||||++++++..++|+++++|.||.|||.|.|.+.++ .++.|.++|||++. .+++++
T Consensus 3 ~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~v~v~d~~~---~~~~~~ 78 (116)
T cd08376 3 TIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDD-QSQILEIEVWDKDT---GKKDEF 78 (116)
T ss_pred EEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCC-CCCEEEEEEEECCC---CCCCCe
Confidence 6899999999864 5789999999998889999999999999999999999765 35689999999984 678999
Q ss_pred cEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEEE
Q 038990 466 LGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWK 503 (505)
Q Consensus 466 lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~~ 503 (505)
||++.++|+++..+.....||+|.+. +|+|++.++|.
T Consensus 79 iG~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~~ 115 (116)
T cd08376 79 IGRCEIDLSALPREQTHSLELELEDG-EGSLLLLLTLT 115 (116)
T ss_pred EEEEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEec
Confidence 99999999999988888999999865 79999999874
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=141.64 Aligned_cols=102 Identities=34% Similarity=0.554 Sum_probs=92.5
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcc
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDK 343 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~ 343 (505)
|+|+|++|++|+..|..|.+||||++++++.. .++|+++.++.||.|||+|.|.+.+. .+.|.++|||++..++|++
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~--~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~ 78 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKT--VYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDF 78 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEE--EEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcc
Confidence 78999999999999988999999999998643 36899999999999999999998764 5789999999999999999
Q ss_pred cEEEEEECccCCCCCeeEEEEeccc
Q 038990 344 LGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 344 lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
||++.++++++..+...+.|++|..
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~ 103 (121)
T cd04042 79 MGSAFVDLSTLELNKPTEVKLKLED 103 (121)
T ss_pred eEEEEEEHHHcCCCCCeEEEEECCC
Confidence 9999999999999888899998853
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-17 Score=143.63 Aligned_cols=97 Identities=31% Similarity=0.494 Sum_probs=89.0
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcC
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWE 336 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d 336 (505)
.....|.|+|+|++|++|+..|..|.+||||+++++... ++|++++++.||.|||+|.|.+.+...+.|.++|||++
T Consensus 10 ~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~---~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d 86 (136)
T cd08375 10 RASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQE---HKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRD 86 (136)
T ss_pred CCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEe---eeccccCCCCCCccCceEEEEecCccCCEEEEEEEECC
Confidence 345789999999999999999988999999999998654 58999999999999999999998777789999999999
Q ss_pred CCCCCcccEEEEEECccCCC
Q 038990 337 KVGTHDKLGMQVVPLRSLTP 356 (505)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~ 356 (505)
..++|++||++.+++.++..
T Consensus 87 ~~~~d~~lG~~~i~l~~l~~ 106 (136)
T cd08375 87 FFSPDDFLGRTEIRVADILK 106 (136)
T ss_pred CCCCCCeeEEEEEEHHHhcc
Confidence 99999999999999999886
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.4e-17 Score=138.71 Aligned_cols=111 Identities=20% Similarity=0.330 Sum_probs=97.7
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcC-eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCC
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRG-EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKE 464 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~ 464 (505)
+|+|.+|++|+.. +.+||||++++++ ..++|++++++.||+|||.|.|.+.+. .+.+.|+|||++. .++++
T Consensus 3 ~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~D~d~---~~~~~ 77 (121)
T cd04042 3 DIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV--TQPLYIKVFDYDR---GLTDD 77 (121)
T ss_pred EEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC--CCeEEEEEEeCCC---CCCCc
Confidence 6899999999753 5899999999987 456999999999999999999998764 4689999999984 67899
Q ss_pred ccEEEEEeccccccCCEEeEEEEeCCCC----CceEEEEEEEEe
Q 038990 465 SLGYVDINLHDVLHNGRLKEKYHLINSK----NGAVQVEIKWKA 504 (505)
Q Consensus 465 ~lG~~~i~L~~l~~~~~~~~~~~L~~~~----~G~i~l~~~~~~ 504 (505)
+||++.++++++..+...+.|++|.+.+ .|+|++++++.|
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 78 FMGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred ceEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence 9999999999999887788999997543 699999999987
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-17 Score=141.62 Aligned_cols=104 Identities=31% Similarity=0.512 Sum_probs=92.6
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCc
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHD 342 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~ 342 (505)
.|+|+|++|++|+.++..+.+||||++++++.. .+|++++++.||.|||+|.|.+.......|.|+|||++..++++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~ 77 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQT---LETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKND 77 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEE---EeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 489999999999999988899999999998654 58999999999999999999997766678999999999999999
Q ss_pred ccEEEEEECccCCCCCeeEEEEecccc
Q 038990 343 KLGMQVVPLRSLTPNETKELTLDLVKN 369 (505)
Q Consensus 343 ~lG~~~i~l~~l~~~~~~~~~l~l~~~ 369 (505)
+||++.++++++..+.....|++|...
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~~ 104 (123)
T cd04025 78 FLGKVVFSIQTLQQAKQEEGWFRLLPD 104 (123)
T ss_pred EeEEEEEEHHHcccCCCCCCEEECCCC
Confidence 999999999999877666778887654
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=138.49 Aligned_cols=95 Identities=23% Similarity=0.326 Sum_probs=82.5
Q ss_pred EEEEEEEeeccCccccCCC----CCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCC-CCEEEEEEEEcC
Q 038990 262 GILHVKVIRAIRLLKMDIF----GASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPE-TQVLQLHVYDWE 336 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~----g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~-~~~L~v~v~d~d 336 (505)
|+|.|+|++|++|+..+.. +.+||||++++++.. +||+++++++||+|||+|.|.+.+.. ...|.++|||+|
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~---~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRV---FRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEe---EeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence 7899999999999987642 358999999997654 58999999999999999999986543 457999999999
Q ss_pred CCCCCcccEEEEEECccCCCCCe
Q 038990 337 KVGTHDKLGMQVVPLRSLTPNET 359 (505)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~~~~ 359 (505)
..++|++||++.++|+++..+..
T Consensus 78 ~~~~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 78 KFSFNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred CCCCCcceEEEEEEHHHHHhhCC
Confidence 99999999999999999887643
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-17 Score=142.71 Aligned_cols=110 Identities=25% Similarity=0.317 Sum_probs=91.7
Q ss_pred CcCCeEEEEEEEeeccCccccCCC-CCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIF-GASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLH 331 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~ 331 (505)
+....+.|.|+|++|+||+.++.. |.+||||++++.+.. ..++||++++++.||+|||+|.|.+... ....|.+.
T Consensus 10 Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~ 89 (128)
T cd08392 10 YNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVS 89 (128)
T ss_pred EeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEE
Confidence 455678999999999999999875 899999999997653 3356999999999999999999998542 35689999
Q ss_pred EEEcCCCCCCcccEEEEEECccCCCCC---eeEEEEec
Q 038990 332 VYDWEKVGTHDKLGMQVVPLRSLTPNE---TKELTLDL 366 (505)
Q Consensus 332 v~d~d~~~~d~~lG~~~i~l~~l~~~~---~~~~~l~l 366 (505)
|||++..+++++||++.|+|+++.... ....|++|
T Consensus 90 V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 90 VWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 999999999999999999999986543 33455554
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.2e-17 Score=139.17 Aligned_cols=105 Identities=18% Similarity=0.355 Sum_probs=91.2
Q ss_pred EEEEeeecC---CCC---CCCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccC--
Q 038990 389 KATEYGAKD---LEG---KHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRL-- 460 (505)
Q Consensus 389 ~v~v~~a~~---L~~---~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~-- 460 (505)
+|+|++|++ |+. .+.+||||.+.+++++.+|++++++.||+|||+|.|.+.++ ...|.|+|||++. .
T Consensus 3 ~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~--~~~l~v~V~d~d~---~~~ 77 (126)
T cd08379 3 EVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP--CTVLTVGVFDNSQ---SHW 77 (126)
T ss_pred EEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC--CCEEEEEEEECCC---ccc
Confidence 689999999 654 36899999999999999999999999999999999999775 3589999999874 3
Q ss_pred ----CCCCccEEEEEeccccccCCEEeEEEEeCCC------CCceEEE
Q 038990 461 ----RSKESLGYVDINLHDVLHNGRLKEKYHLINS------KNGAVQV 498 (505)
Q Consensus 461 ----~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~------~~G~i~l 498 (505)
.+|++||++.++|+++..+....+||+|.+. +.|+|++
T Consensus 78 ~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 78 KEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred cccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 3899999999999999998888999999842 3677764
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-17 Score=139.89 Aligned_cols=110 Identities=25% Similarity=0.462 Sum_probs=94.5
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccC-CCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCC
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKK-CRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSK 463 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d 463 (505)
.+|+|.+|++|+.. +.+||||++++++..++|+++++ +.||+|||.|.|.+..+ ..+.|.|+|||++. .+ +
T Consensus 3 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~---~~-~ 77 (118)
T cd08681 3 LVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED-KKPILKVAVFDDDK---RK-P 77 (118)
T ss_pred EEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCC---CC-C
Confidence 37899999999763 58999999999998889998765 78999999999999875 34689999999874 33 8
Q ss_pred CccEEEEEeccccccCCEEeEEEEeCCCC--CceEEEEEEE
Q 038990 464 ESLGYVDINLHDVLHNGRLKEKYHLINSK--NGAVQVEIKW 502 (505)
Q Consensus 464 ~~lG~~~i~L~~l~~~~~~~~~~~L~~~~--~G~i~l~~~~ 502 (505)
++||++.++++++..+....+||+|...+ .|+|+|+++|
T Consensus 78 ~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 78 DLIGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred cceEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence 99999999999998776678999998653 7999999986
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.7e-17 Score=139.78 Aligned_cols=107 Identities=26% Similarity=0.410 Sum_probs=90.3
Q ss_pred cccccCCcCCCcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeec-CCC
Q 038990 247 IPILDGSLGAIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKD-PET 325 (505)
Q Consensus 247 ~~l~~~~~~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~-~~~ 325 (505)
-|++++.........|.|+|+|++|++|+. +..+.+||||++++++. +++|++++++.||+|||+|.|.... ...
T Consensus 13 ~~~~~~~~~~~~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~---~~kT~vi~~t~nPvWNE~F~f~~~~~~~~ 88 (127)
T cd04032 13 SPNVNSNCCPTRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQ---EKRTEVIWNNNNPRWNATFDFGSVELSPG 88 (127)
T ss_pred CCCcCCCcCcCcCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCc---cccCceecCCCCCcCCCEEEEecccCCCC
Confidence 366665544567789999999999999984 66788999999999866 3699999999999999999997533 356
Q ss_pred CEEEEEEEEcCCCCCCcccEEEEEECccCCCC
Q 038990 326 QVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPN 357 (505)
Q Consensus 326 ~~L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~ 357 (505)
+.|+|+|||++..++|++||++.+++.....+
T Consensus 89 ~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 89 GKLRFEVWDRDNGWDDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CEEEEEEEeCCCCCCCCeeEEEEEEecCCcee
Confidence 79999999999999999999999999976643
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-17 Score=141.14 Aligned_cols=111 Identities=31% Similarity=0.494 Sum_probs=95.5
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeec---CCCCEEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKD---PETQVLQLHVY 333 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~---~~~~~L~v~v~ 333 (505)
+....+.|.|+|++|+||+..+..+.+||||++++.+......+|++++++.||.|||+|.|.+.. .....|.++||
T Consensus 11 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~ 90 (125)
T cd08386 11 YDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVL 90 (125)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEE
Confidence 455678999999999999999988999999999996543345799999999999999999997532 23567999999
Q ss_pred EcCCCCCCcccEEEEEECccCCCCCeeEEEEecc
Q 038990 334 DWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLV 367 (505)
Q Consensus 334 d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~ 367 (505)
|++..+++++||++.++++++..+.....|++|.
T Consensus 91 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 91 DYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred eCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 9999999999999999999999888888888764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.3e-17 Score=138.32 Aligned_cols=109 Identities=20% Similarity=0.372 Sum_probs=96.0
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcC---eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCC
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRG---EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRS 462 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~ 462 (505)
+|+|++|++|+.. +.+||||++++.+ ..++|++++++.||+|||+|.|.+... ..+.|.|+|||++. . +
T Consensus 3 ~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~-~~~~l~v~v~d~d~---~-~ 77 (119)
T cd04036 3 TVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ-VKNVLELTVMDEDY---V-M 77 (119)
T ss_pred EEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcc-cCCEEEEEEEECCC---C-C
Confidence 6899999999764 5899999999964 456999999999999999999999765 34579999999984 5 8
Q ss_pred CCccEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEE
Q 038990 463 KESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKW 502 (505)
Q Consensus 463 d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~ 502 (505)
+++||++.++++++..+.....||+|...++|++++++.+
T Consensus 78 ~~~iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~ 117 (119)
T cd04036 78 DDHLGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL 117 (119)
T ss_pred CcccEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence 8999999999999998888899999998889999999875
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-17 Score=143.34 Aligned_cols=111 Identities=18% Similarity=0.267 Sum_probs=94.7
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccC-CCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCC
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKK-CRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKE 464 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~ 464 (505)
+|+|.+|++|+.. +.+||||+++++++.++|+++.+ +.||+|||.|+|.+.++ ..+.+.++|+|++. .++++
T Consensus 3 ~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~-~~~~l~v~V~d~~~---~~~dd 78 (150)
T cd04019 3 RVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEP-FEDHLILSVEDRVG---PNKDE 78 (150)
T ss_pred EEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCc-cCCeEEEEEEEecC---CCCCC
Confidence 6899999999653 58999999999998889999977 69999999999999765 34689999999874 56789
Q ss_pred ccEEEEEeccccccC----CEEeEEEEeCCCC-----------CceEEEEEEEE
Q 038990 465 SLGYVDINLHDVLHN----GRLKEKYHLINSK-----------NGAVQVEIKWK 503 (505)
Q Consensus 465 ~lG~~~i~L~~l~~~----~~~~~~~~L~~~~-----------~G~i~l~~~~~ 503 (505)
+||++.++|+++..+ ...++||+|.+.+ +|+|+|++.|.
T Consensus 79 ~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~ 132 (150)
T cd04019 79 PLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD 132 (150)
T ss_pred eEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence 999999999998753 3468999998643 49999999875
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.6e-16 Score=167.88 Aligned_cols=278 Identities=22% Similarity=0.356 Sum_probs=198.8
Q ss_pred chhhHHHHHHHHHHHHHhhccCCCC-------ccc---cccc----CCcCCCcCCeEEEEEEEeeccCccccCCCCCCCc
Q 038990 220 IPGLYQFIQETIRNQISALYLWPQP-------LEI---PILD----GSLGAIKKPVGILHVKVIRAIRLLKMDIFGASDP 285 (505)
Q Consensus 220 iP~l~~~i~~~i~~~l~~~~v~P~~-------~~~---~l~~----~~~~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dp 285 (505)
++...+-+.+.|.......++.|.+ ++. |+-. .+...+..+.|.++|+|..|.+|......+.+||
T Consensus 655 i~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dP 734 (1227)
T COG5038 655 IATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDP 734 (1227)
T ss_pred eccccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCccccc
Confidence 4445555567777777777887776 111 3321 1222467899999999999999997777899999
Q ss_pred EEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcccEEEEEECccCCCCCee-----
Q 038990 286 YVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETK----- 360 (505)
Q Consensus 286 yv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~~~~----- 360 (505)
|+++.+++.. ++||-....++||.||+..+..+..+ .+.+.++++|++..+.|..+|++.++++++......
T Consensus 735 ya~v~~n~~~--k~rti~~~~~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~ 811 (1227)
T COG5038 735 YATVLVNNLV--KYRTIYGSSTLNPIWNEILYVPVTSK-NQRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALME 811 (1227)
T ss_pred ceEEEeccee--EEEEecccCccccceeeeEEEEecCC-ccEEeeeeecchhccccceeceeeeeeeeeeecCCCcceEE
Confidence 9999998744 47898889999999999999999764 577999999999999999999999998876541100
Q ss_pred ----------------------EEEEecccc---CCC----------------------CCc--------cc--------
Q 038990 361 ----------------------ELTLDLVKN---TNP----------------------NDP--------QD-------- 377 (505)
Q Consensus 361 ----------------------~~~l~l~~~---~~~----------------------~~~--------~~-------- 377 (505)
.+.+.+.+. .+. .+. ..
T Consensus 812 ~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v 891 (1227)
T COG5038 812 TIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEV 891 (1227)
T ss_pred eecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhcceee
Confidence 011111000 000 000 00
Q ss_pred ----c----c-----------ccc--------------------------------------------------------
Q 038990 378 ----K----K-----------FER-------------------------------------------------------- 382 (505)
Q Consensus 378 ----~----~-----------~~g-------------------------------------------------------- 382 (505)
. + ..|
T Consensus 892 ~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s 971 (1227)
T COG5038 892 EELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYS 971 (1227)
T ss_pred ccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhccc
Confidence 0 0 000
Q ss_pred -------c--------------------------------cc--------------------ce------EEEEEeeecC
Q 038990 383 -------K--------------------------------ES--------------------EV------GKATEYGAKD 397 (505)
Q Consensus 383 -------~--------------------------------~~--------------------~~------a~v~v~~a~~ 397 (505)
+ .+ |+ .+|.+..|.|
T Consensus 972 ~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~n 1051 (1227)
T COG5038 972 ETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGEN 1051 (1227)
T ss_pred eEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccCC
Confidence 0 00 00 1577778888
Q ss_pred CCCC---CCCCCEEEEEEcCeE-EEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCccEEEEEec
Q 038990 398 LEGK---HHNNPYAVVICRGEQ-KKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINL 473 (505)
Q Consensus 398 L~~~---~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L 473 (505)
|+.. +.+||||++.+++++ ++|+++++|+||+|||.|...+.+. ..+.+.+.|+|++. ..+++.||.+.++|
T Consensus 1052 l~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r-~~D~~~i~v~Dwd~---~~knd~lg~~~idL 1127 (1227)
T COG5038 1052 LPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNR-VKDVLTINVNDWDS---GEKNDLLGTAEIDL 1127 (1227)
T ss_pred CcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeecc-ccceEEEEEeeccc---CCCccccccccccH
Confidence 8763 569999999999884 7999999999999999999999876 45789999999985 56889999999999
Q ss_pred cccccCCEEeEEEEeCCCC----CceEEEEEEEEe
Q 038990 474 HDVLHNGRLKEKYHLINSK----NGAVQVEIKWKA 504 (505)
Q Consensus 474 ~~l~~~~~~~~~~~L~~~~----~G~i~l~~~~~~ 504 (505)
+.+..+.......+|.+.. .|.++....+++
T Consensus 1128 ~~l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~r~ 1162 (1227)
T COG5038 1128 SKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNFRS 1162 (1227)
T ss_pred hhcCcCCccceeeeccCcceEecccEeecceecch
Confidence 9998877655555555433 566666665553
|
|
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-17 Score=141.05 Aligned_cols=103 Identities=26% Similarity=0.427 Sum_probs=88.9
Q ss_pred EEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeC-CCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCC
Q 038990 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKM-KTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGT 340 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~-~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~ 340 (505)
|.|+|+|++|++|+..+..+.+||||++++++.. ++|+++. ++.||.|||+|.|.+.....+.|.++|||++..+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~---~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~- 76 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVT---KKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK- 76 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCc---cccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence 6899999999999999988999999999998743 4777764 5799999999999998766788999999998765
Q ss_pred CcccEEEEEECccCCCCCeeEEEEeccc
Q 038990 341 HDKLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 341 d~~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
|++||++.++++++..+.....|++|..
T Consensus 77 ~~~iG~~~~~l~~~~~~~~~~~w~~L~~ 104 (118)
T cd08681 77 PDLIGDTEVDLSPALKEGEFDDWYELTL 104 (118)
T ss_pred CcceEEEEEecHHHhhcCCCCCcEEecc
Confidence 9999999999999877666667777653
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-17 Score=141.10 Aligned_cols=111 Identities=30% Similarity=0.355 Sum_probs=96.3
Q ss_pred CCcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEE-eec--CCCCEEEEEE
Q 038990 256 AIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLT-VKD--PETQVLQLHV 332 (505)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~-v~~--~~~~~L~v~v 332 (505)
.+....+.|.|+|++|+||++.+..|.+||||++.+.+.+..+++|+++++ .||+|||+|.|. +.. .....|.++|
T Consensus 10 ~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V 88 (124)
T cd08389 10 EYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRL 88 (124)
T ss_pred EECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEE
Confidence 355677899999999999999998889999999988766555679999887 999999999998 532 2467899999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCCeeEEEEecc
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLV 367 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~ 367 (505)
||++..+++++||++.++|+++..+.....|++|.
T Consensus 89 ~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 89 YGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred EECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 99999999999999999999999888888888774
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.6e-17 Score=138.88 Aligned_cols=109 Identities=22% Similarity=0.326 Sum_probs=94.6
Q ss_pred EEEEeeecCCCCCCCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCccEE
Q 038990 389 KATEYGAKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGY 468 (505)
Q Consensus 389 ~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~lG~ 468 (505)
+|+|++|++|+.. .+||||++++++...+|++++++.||+|||+|.|.+.+. ....|.++|||++. . ++++||+
T Consensus 3 ~V~Vi~a~~L~~~-~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~-~~~~L~~~v~d~d~---~-~~~~lG~ 76 (121)
T cd08378 3 YVRVVKARGLPAN-SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRL-QGSTLEVSVWDKDK---A-KDDFLGG 76 (121)
T ss_pred EEEEEEecCCCcc-cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCC-cCCEEEEEEEeCCC---C-cCceeee
Confidence 6899999999887 899999999998888999999999999999999998764 34689999999984 3 7899999
Q ss_pred EEEeccccccCC-----EEeEEEEeCCCC----CceEEEEEEEE
Q 038990 469 VDINLHDVLHNG-----RLKEKYHLINSK----NGAVQVEIKWK 503 (505)
Q Consensus 469 ~~i~L~~l~~~~-----~~~~~~~L~~~~----~G~i~l~~~~~ 503 (505)
+.++|+++..+. ...+||+|.+.+ +|+|+|++.|-
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG 120 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence 999999987632 346999998754 69999999873
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.1e-17 Score=140.12 Aligned_cols=112 Identities=21% Similarity=0.347 Sum_probs=95.6
Q ss_pred EEEEeeecCCCC---CCCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCC--CCeEEEEEEEccCCccCC-C
Q 038990 389 KATEYGAKDLEG---KHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPL--KEKIHIEVKSKRRGLRLR-S 462 (505)
Q Consensus 389 ~v~v~~a~~L~~---~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~--~~~l~i~V~d~~~~~~~~-~ 462 (505)
+|+|++|++|.. .+.+||||++++++..++|++++++.||+|||.|.|.+..+.. ...|.|+|||++. +. +
T Consensus 3 ~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~---~~~~ 79 (127)
T cd04022 3 VVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR---SGRR 79 (127)
T ss_pred EEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC---CcCC
Confidence 689999999975 3579999999999999999999999999999999999976422 2479999999874 54 7
Q ss_pred CCccEEEEEecccccc-CCEEeEEEEeCCC-----CCceEEEEEEEE
Q 038990 463 KESLGYVDINLHDVLH-NGRLKEKYHLINS-----KNGAVQVEIKWK 503 (505)
Q Consensus 463 d~~lG~~~i~L~~l~~-~~~~~~~~~L~~~-----~~G~i~l~~~~~ 503 (505)
+++||++.++++++.. +....+||+|... .+|+|+|++.+.
T Consensus 80 d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 80 RSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 8999999999999984 5566899999854 389999999875
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-17 Score=135.45 Aligned_cols=100 Identities=31% Similarity=0.457 Sum_probs=88.0
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCc
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHD 342 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~ 342 (505)
.|.|+|++|++|+..+..+.+||||++++++.. ++|++++++.||.|||+|.|.+.++..+.|.++|||++. ++
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~ 74 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTT---QKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GK 74 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEE---EeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CC
Confidence 378999999999999888999999999999743 689999999999999999999988777899999999975 88
Q ss_pred ccEEEEEECccCCCCC--eeEEEEeccc
Q 038990 343 KLGMQVVPLRSLTPNE--TKELTLDLVK 368 (505)
Q Consensus 343 ~lG~~~i~l~~l~~~~--~~~~~l~l~~ 368 (505)
+||++.+++.++.... ....|++|..
T Consensus 75 ~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 75 SLGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred ccEEEEEEHHHhhccccceeeeeEecCC
Confidence 9999999999988654 4567887754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.5e-17 Score=142.43 Aligned_cols=107 Identities=30% Similarity=0.386 Sum_probs=89.2
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEee---------------cCCC
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVK---------------DPET 325 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~---------------~~~~ 325 (505)
.|.|+|++|+||+. ..|.+||||++++.+. +...++|+++++|+||+|||+|.|.+. +...
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 37899999999998 4689999999999763 223468999999999999999999985 1123
Q ss_pred CEEEEEEEEcCCCCCCcccEEEEEECccCCCC-CeeEEEEeccccCC
Q 038990 326 QVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPN-ETKELTLDLVKNTN 371 (505)
Q Consensus 326 ~~L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~-~~~~~~l~l~~~~~ 371 (505)
..|.++|||++..++|++||++.+++.++..+ .....|++|....+
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~ 125 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREE 125 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCccc
Confidence 57999999999888999999999999999987 56677888865433
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=138.36 Aligned_cols=111 Identities=23% Similarity=0.396 Sum_probs=97.4
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCC
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKE 464 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~ 464 (505)
.+|+|++|++|+.. +.+||||++++++..++|++++++.||.|||.|.|.+.+. ..+.|.|+|||++. ++.|+
T Consensus 17 L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~-~~~~l~i~V~D~d~---~~~d~ 92 (136)
T cd08375 17 LMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDL-EQDVLCITVFDRDF---FSPDD 92 (136)
T ss_pred EEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCc-cCCEEEEEEEECCC---CCCCC
Confidence 38999999999753 6899999999998889999999999999999999999765 34689999999984 67889
Q ss_pred ccEEEEEecccccc-----CCEEeEEEEeCCCCCceEEEEEEE
Q 038990 465 SLGYVDINLHDVLH-----NGRLKEKYHLINSKNGAVQVEIKW 502 (505)
Q Consensus 465 ~lG~~~i~L~~l~~-----~~~~~~~~~L~~~~~G~i~l~~~~ 502 (505)
+||++.++|.++.. +....+|.++.+...|+|+|++.+
T Consensus 93 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 93 FLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred eeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence 99999999999987 345678888887778999999987
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-17 Score=140.47 Aligned_cols=110 Identities=31% Similarity=0.421 Sum_probs=93.5
Q ss_pred CcCCeEEEEEEEeeccCccccC-CCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMD-IFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLH 331 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~ 331 (505)
+....+.|.|+|++|+||+..+ ..+.+||||++++.+.. ...++|++++++.||.|||+|.|.+... ....|.++
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~ 88 (123)
T cd08521 9 YNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLS 88 (123)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 4556789999999999999988 67899999999986432 2357899999999999999999998642 35689999
Q ss_pred EEEcCCCCCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 332 VYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 332 v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
|||++..+++++||++.++++++..+.....|++|
T Consensus 89 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 89 VWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 99999999999999999999999877666777764
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.9e-17 Score=138.02 Aligned_cols=111 Identities=26% Similarity=0.446 Sum_probs=95.8
Q ss_pred EEEEEeeecCCCC-----CCCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCC
Q 038990 388 GKATEYGAKDLEG-----KHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRS 462 (505)
Q Consensus 388 a~v~v~~a~~L~~-----~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~ 462 (505)
.+|.|++|++|+. .+.+||||++++++..++|++++++.||+|||+|.|.+..+ ..+.|.|+|||++. .+.
T Consensus 3 l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~-~~~~l~i~v~d~~~---~~~ 78 (128)
T cd04024 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSA-QNQLLKLILWDKDR---FAG 78 (128)
T ss_pred EEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCC-CCCEEEEEEEECCC---CCC
Confidence 3689999999964 35789999999998889999999999999999999999873 34689999999984 668
Q ss_pred CCccEEEEEecccccc---CCEEeEEEEeCCC-------CCceEEEEEEE
Q 038990 463 KESLGYVDINLHDVLH---NGRLKEKYHLINS-------KNGAVQVEIKW 502 (505)
Q Consensus 463 d~~lG~~~i~L~~l~~---~~~~~~~~~L~~~-------~~G~i~l~~~~ 502 (505)
+++||++.++++++.. .....+||+|.+. .+|+|+|++.|
T Consensus 79 ~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 79 KDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 8999999999999983 3345899999865 38999999998
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-17 Score=139.61 Aligned_cols=106 Identities=23% Similarity=0.286 Sum_probs=88.4
Q ss_pred CeEEEEEEEeeccCccccCCCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeecCC-CCEEEEEEEEcC
Q 038990 260 PVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKDPE-TQVLQLHVYDWE 336 (505)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~~~-~~~L~v~v~d~d 336 (505)
..+.|.|+|++|+||+.++ .|.+||||++++.+.. ..++||++++++.||.|||+|.|.+.... ...|.++|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 4589999999999999998 7899999999997643 23468999999999999999999985422 357899999998
Q ss_pred CCC-CCcccEEEEEECccCCCCCeeEEEEec
Q 038990 337 KVG-THDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 337 ~~~-~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
... ++++||++.+++.++..+.....|+.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 775 478999999999999877666666643
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.8e-17 Score=139.71 Aligned_cols=103 Identities=36% Similarity=0.531 Sum_probs=89.7
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCC---CCEEEEEEEEcCCCC
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPE---TQVLQLHVYDWEKVG 339 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~---~~~L~v~v~d~d~~~ 339 (505)
.|+|+|++|++|+..+..|.+||||++++++++ ++|++++++.||.|||+|.|.+.++. ...|.++|||++..+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~---~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK---KRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEE---ecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 389999999999999988999999999999765 58999999999999999999997543 367999999999876
Q ss_pred -CCcccEEEEEECccCC-CCCeeEEEEeccc
Q 038990 340 -THDKLGMQVVPLRSLT-PNETKELTLDLVK 368 (505)
Q Consensus 340 -~d~~lG~~~i~l~~l~-~~~~~~~~l~l~~ 368 (505)
++++||++.++++++. .+.....|++|.+
T Consensus 78 ~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~ 108 (127)
T cd04022 78 RRRSFLGRVRISGTSFVPPSEAVVQRYPLEK 108 (127)
T ss_pred CCCCeeeEEEEcHHHcCCCCCccceEeEeee
Confidence 8999999999999988 4556677888764
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-16 Score=135.30 Aligned_cols=109 Identities=22% Similarity=0.296 Sum_probs=94.0
Q ss_pred EEEEeeecCCCCC----CCCCCEEEEEEcCe-EEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCC
Q 038990 389 KATEYGAKDLEGK----HHNNPYAVVICRGE-QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSK 463 (505)
Q Consensus 389 ~v~v~~a~~L~~~----~~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d 463 (505)
.|.|.+|+||+.. +.+||||++++++. ..+|+++++|.||+|||+|.|.+.+. ...|.+.|||++. .+++
T Consensus 3 ~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~--~~~l~~~v~d~~~---~~~~ 77 (121)
T cd08401 3 KIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT--FRHLSFYIYDRDV---LRRD 77 (121)
T ss_pred EEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC--CCEEEEEEEECCC---CCCC
Confidence 5889999999763 47899999999765 46999999999999999999999754 3589999999984 7789
Q ss_pred CccEEEEEeccccccCCEEeEEEEeCCC-----CCceEEEEEEE
Q 038990 464 ESLGYVDINLHDVLHNGRLKEKYHLINS-----KNGAVQVEIKW 502 (505)
Q Consensus 464 ~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~~ 502 (505)
++||.+.++++++..+...+.||+|... .+|+|+|++++
T Consensus 78 ~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 78 SVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred ceEEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 9999999999999887777899999742 27999999864
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.4e-17 Score=139.44 Aligned_cols=110 Identities=27% Similarity=0.331 Sum_probs=94.1
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v 332 (505)
+....+.|+|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.+.|
T Consensus 11 y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v 90 (127)
T cd04030 11 YSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAV 90 (127)
T ss_pred EeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEE
Confidence 455678999999999999999988999999999996532 3457999999999999999999998532 357899999
Q ss_pred EEcCCC--CCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 333 YDWEKV--GTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 333 ~d~d~~--~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
||++.. +++++||++.+++.++..+.....|++|
T Consensus 91 ~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 91 KNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred EECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 999875 6899999999999999887777778765
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-17 Score=135.80 Aligned_cols=98 Identities=16% Similarity=0.183 Sum_probs=83.5
Q ss_pred EEEEEeeecCCCCCCCCCCEEEEEEcC----eEEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCCccCCC
Q 038990 388 GKATEYGAKDLEGKHHNNPYAVVICRG----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRGLRLRS 462 (505)
Q Consensus 388 a~v~v~~a~~L~~~~~~dpyv~v~~~~----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~ 462 (505)
.+|+|++|++|+..+.+||||++++.. .+++|+++++|.||+|||+|.|.+....+. ..|.++|||++. +++
T Consensus 16 L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Dr---fs~ 92 (118)
T cd08677 16 LHVNILEAENISVDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDR---FSR 92 (118)
T ss_pred EEEEEEEecCCCCCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCC---CCC
Confidence 489999999999777899999999964 356999999999999999999999765443 379999999994 899
Q ss_pred CCccEEEEEeccccccCCEEeEEEEe
Q 038990 463 KESLGYVDINLHDVLHNGRLKEKYHL 488 (505)
Q Consensus 463 d~~lG~~~i~L~~l~~~~~~~~~~~L 488 (505)
+++||++.++++++.......+|-+|
T Consensus 93 ~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 93 HSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CceEEEEEEccccccCCccccchhcC
Confidence 99999999999987555555677654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.5e-17 Score=138.76 Aligned_cols=104 Identities=31% Similarity=0.452 Sum_probs=91.2
Q ss_pred EEEEEEEeeccCccccCC--CCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCC
Q 038990 262 GILHVKVIRAIRLLKMDI--FGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVG 339 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~ 339 (505)
|.|+|+|++|++|+..+. .+.+||||++++++.. .+|++++++.||.|||+|.|.+.+...+.|.++|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~---~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQR---FKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEE---EecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 789999999999999988 7899999999997654 58999999999999999999998766789999999999988
Q ss_pred CCcccEEEEEECccCCC---CCeeEEEEeccc
Q 038990 340 THDKLGMQVVPLRSLTP---NETKELTLDLVK 368 (505)
Q Consensus 340 ~d~~lG~~~i~l~~l~~---~~~~~~~l~l~~ 368 (505)
++++||++.+++.++.. ......|++|..
T Consensus 78 ~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~ 109 (128)
T cd04024 78 GKDYLGEFDIALEEVFADGKTGQSDKWITLKS 109 (128)
T ss_pred CCCcceEEEEEHHHhhcccccCccceeEEccC
Confidence 99999999999999873 233467777754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.4e-17 Score=137.79 Aligned_cols=111 Identities=27% Similarity=0.372 Sum_probs=95.8
Q ss_pred CCcCCeEEEEEEEeeccCccccC-CCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEE
Q 038990 256 AIKKPVGILHVKVIRAIRLLKMD-IFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHV 332 (505)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v 332 (505)
.++...+.|.|+|++|+||+..+ ..+.+||||++++.+.....++|+++++++||+|||+|.|.+... ....|.|+|
T Consensus 8 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v 87 (123)
T cd08390 8 QYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSV 87 (123)
T ss_pred EECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEE
Confidence 35567789999999999999998 678899999999865433346899999999999999999998643 245799999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
||++..+++++||++.++|+++........|++|
T Consensus 88 ~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L 121 (123)
T cd08390 88 YDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDL 121 (123)
T ss_pred EECCcCCCCcEEEEEEEeccceecCCCceEEEeC
Confidence 9999988999999999999999988888888876
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-16 Score=135.25 Aligned_cols=111 Identities=19% Similarity=0.372 Sum_probs=96.0
Q ss_pred EEEEeeecCCCC-CCCCCCEEEEEEcC--eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCc
Q 038990 389 KATEYGAKDLEG-KHHNNPYAVVICRG--EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKES 465 (505)
Q Consensus 389 ~v~v~~a~~L~~-~~~~dpyv~v~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~ 465 (505)
.|+|++|++|+. .+.+||||+++++. ..++|++++++.||+|||.|.|.+... .+.|.|+|||++. .+.+++
T Consensus 2 ~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~~~v~d~~~---~~~~~~ 76 (126)
T cd08678 2 LVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPN--SKELLFEVYDNGK---KSDSKF 76 (126)
T ss_pred EEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCC--CCEEEEEEEECCC---CCCCce
Confidence 588999999975 35899999999974 457999999999999999999999542 4689999999985 667999
Q ss_pred cEEEEEeccccccCCEEeEEEEeCCC------CCceEEEEEEEEe
Q 038990 466 LGYVDINLHDVLHNGRLKEKYHLINS------KNGAVQVEIKWKA 504 (505)
Q Consensus 466 lG~~~i~L~~l~~~~~~~~~~~L~~~------~~G~i~l~~~~~~ 504 (505)
||++.++++++.......+||+|... ..|+|+++++|.+
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 99999999999987777899999743 3899999999975
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.6e-17 Score=142.18 Aligned_cols=104 Identities=25% Similarity=0.353 Sum_probs=90.2
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCC-CCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCC
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMK-TLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTH 341 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~-t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d 341 (505)
.|+|+|++|++|+.++..|.+||||+++++++. .+|+++.+ ++||+|||+|.|.+.++..+.+.++|||++..++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~---~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~d 77 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQV---LRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKD 77 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEE---eeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCC
Confidence 489999999999999999999999999999754 57888766 69999999999999776667899999999988899
Q ss_pred cccEEEEEECccCCCC----CeeEEEEecccc
Q 038990 342 DKLGMQVVPLRSLTPN----ETKELTLDLVKN 369 (505)
Q Consensus 342 ~~lG~~~i~l~~l~~~----~~~~~~l~l~~~ 369 (505)
++||++.++++++..+ .....|++|...
T Consensus 78 d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~ 109 (150)
T cd04019 78 EPLGRAVIPLNDIERRVDDRPVPSRWFSLERP 109 (150)
T ss_pred CeEEEEEEEHHHCcccCCCCccCCceEECcCC
Confidence 9999999999998753 345688888654
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.1e-17 Score=136.40 Aligned_cols=102 Identities=22% Similarity=0.259 Sum_probs=89.6
Q ss_pred EEEEEeeccCccccC-CCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCc
Q 038990 264 LHVKVIRAIRLLKMD-IFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHD 342 (505)
Q Consensus 264 L~V~v~~a~~L~~~d-~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~ 342 (505)
|.|+|++|+||+..+ ..|.+||||++++++.. .++|+++++|+||.|||+|.|.+.+. ...|.+.|||++..++|+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~--~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~ 78 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEE--VFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDS 78 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCcc--EEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCc
Confidence 689999999999874 45789999999997553 36899999999999999999999653 478999999999999999
Q ss_pred ccEEEEEECccCCCCCeeEEEEeccc
Q 038990 343 KLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 343 ~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
+||++.++++++..+...+.|++|.+
T Consensus 79 ~iG~~~i~l~~l~~~~~~~~w~~L~~ 104 (121)
T cd08401 79 VIGKVAIKKEDLHKYYGKDTWFPLQP 104 (121)
T ss_pred eEEEEEEEHHHccCCCCcEeeEEEEc
Confidence 99999999999998877888888864
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.4e-17 Score=138.60 Aligned_cols=109 Identities=29% Similarity=0.427 Sum_probs=89.5
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeecC---CCCEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKDP---ETQVLQLH 331 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~~---~~~~L~v~ 331 (505)
+....+.|.|+|++|+||+..+..+.+||||++++.+.. ..+++|++++++.||.|||+|.|.+... ....|.++
T Consensus 11 ~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~ 90 (125)
T cd04031 11 YDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVT 90 (125)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEE
Confidence 445668999999999999999988899999999997532 2346899999999999999999986442 35789999
Q ss_pred EEEcCCCCCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 332 VYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 332 v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
|||++..+++++||++.+++++... .....|++|
T Consensus 91 V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L 124 (125)
T cd04031 91 VWDYDRDGENDFLGEVVIDLADALL-DDEPHWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeeEEEEecccccc-cCCcceEEC
Confidence 9999998999999999999998332 233456665
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-16 Score=135.01 Aligned_cols=111 Identities=26% Similarity=0.512 Sum_probs=97.3
Q ss_pred EeeecCCCC-CCCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCC-CCCeEEEEEEEccCCccCCCCCccEEE
Q 038990 392 EYGAKDLEG-KHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAP-LKEKIHIEVKSKRRGLRLRSKESLGYV 469 (505)
Q Consensus 392 v~~a~~L~~-~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~i~V~d~~~~~~~~~d~~lG~~ 469 (505)
|.+|++|+. .+.+||||++++++.+++|++++++.||+|||.|.|.+..+. ..+.+.++|||++. .+++++||++
T Consensus 2 vi~a~~L~~~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~---~~~d~~iG~~ 78 (127)
T cd08373 2 VVSLKNLPGLKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK---VGRNRLIGSA 78 (127)
T ss_pred eEEeeCCcccCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC---CCCCceEEEE
Confidence 678999987 468999999999998899999999999999999999997642 34689999999984 6778999999
Q ss_pred EEeccccccCCEEeEEEEeCCC----CCceEEEEEEEEeC
Q 038990 470 DINLHDVLHNGRLKEKYHLINS----KNGAVQVEIKWKAI 505 (505)
Q Consensus 470 ~i~L~~l~~~~~~~~~~~L~~~----~~G~i~l~~~~~~~ 505 (505)
.++++++..+.....|++|.+. ..|+|+++++|.|.
T Consensus 79 ~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 79 TVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPP 118 (127)
T ss_pred EEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCC
Confidence 9999999988888999999743 26999999999884
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.9e-17 Score=136.57 Aligned_cols=103 Identities=31% Similarity=0.463 Sum_probs=91.2
Q ss_pred EEEEEEEeeccCccccCC------CCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEc
Q 038990 262 GILHVKVIRAIRLLKMDI------FGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDW 335 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~------~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~ 335 (505)
|+|+|+|++|+||+..+. .|.+||||++++++.. ++|++++++.||.|||+|.|.+.+...+.|.++|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~---~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQT---FKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEe---EEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence 689999999999998874 3689999999998743 6899999999999999999999776678999999999
Q ss_pred CCCCCCcccEEEEEECccCCCCCeeEEEEeccc
Q 038990 336 EKVGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 336 d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
+.. +|++||++.++++++..+.....|++|..
T Consensus 78 ~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~ 109 (121)
T cd08391 78 DPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLED 109 (121)
T ss_pred CCC-CCCcEEEEEEEHHHhcccCccceEEECcC
Confidence 987 89999999999999988777778888754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.2e-17 Score=134.83 Aligned_cols=101 Identities=29% Similarity=0.433 Sum_probs=86.5
Q ss_pred EEEEEeeccCccccCC-CCCCCcEEEEEECCeecceeeeeeeCCCCCCeE-ceeEEEEeecC--CCCEEEEEEEEcCCCC
Q 038990 264 LHVKVIRAIRLLKMDI-FGASDPYVQLSLSGERIPAKKTSVKMKTLNPEW-NEDFKLTVKDP--ETQVLQLHVYDWEKVG 339 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~-~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~w-ne~f~~~v~~~--~~~~L~v~v~d~d~~~ 339 (505)
|.|+|++|++|+.++. .|.+||||++++++. .+||+++++++||.| ||+|.|.+... ..+.|.++|||++..+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~---~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGST---TYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCe---eEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 5899999999999884 688999999999873 368999999999999 99999999653 2468999999999999
Q ss_pred CCcccEEEEEECccCCCC---CeeEEEEecc
Q 038990 340 THDKLGMQVVPLRSLTPN---ETKELTLDLV 367 (505)
Q Consensus 340 ~d~~lG~~~i~l~~l~~~---~~~~~~l~l~ 367 (505)
++++||++.++++++... .....|++|.
T Consensus 78 ~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 78 ANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 999999999999999873 3345677664
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-16 Score=133.09 Aligned_cols=99 Identities=25% Similarity=0.464 Sum_probs=87.3
Q ss_pred CCCCCEEEEEEcCe-EEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCccEEEEEeccccccC-
Q 038990 402 HHNNPYAVVICRGE-QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHN- 479 (505)
Q Consensus 402 ~~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~- 479 (505)
|.+||||+++++++ .++|++++++.||+|||.|.|.+.+. ..+.|.|+|+|++. . ++++||++.++|+++...
T Consensus 11 G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~---~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 11 GLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDR-RKSRVTVVVKDDRD---R-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred CCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCc-CCCEEEEEEEECCC---C-CCCeEEEEEecHHHHHhhh
Confidence 67999999999875 46999999999999999999999875 34679999999984 5 899999999999999764
Q ss_pred CEEeEEEEeCCCCCceEEEEEEEEeC
Q 038990 480 GRLKEKYHLINSKNGAVQVEIKWKAI 505 (505)
Q Consensus 480 ~~~~~~~~L~~~~~G~i~l~~~~~~~ 505 (505)
....+||+|.+..+|+|+++++|+|+
T Consensus 86 ~~~~~w~~L~~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 86 SVGQQWFPLSGNGQGRIRISALWKPV 111 (111)
T ss_pred hccceeEECCCCCCCEEEEEEEEecC
Confidence 44589999998889999999999996
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-16 Score=130.60 Aligned_cols=97 Identities=26% Similarity=0.437 Sum_probs=85.5
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCc
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKES 465 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~ 465 (505)
.|+|++|++|+.. +.+||||+++++++.++|++++++.||+|||.|.|.+.++ ..+.|.|+|+|++ . +++
T Consensus 3 ~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~v~v~d~~----~--~~~ 75 (105)
T cd04050 3 FVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNP-ENQELEIEVKDDK----T--GKS 75 (105)
T ss_pred EEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCC-CCCEEEEEEEECC----C--CCc
Confidence 6899999999753 5899999999999889999999999999999999999875 3468999999986 2 789
Q ss_pred cEEEEEeccccccCC--EEeEEEEeCCCC
Q 038990 466 LGYVDINLHDVLHNG--RLKEKYHLINSK 492 (505)
Q Consensus 466 lG~~~i~L~~l~~~~--~~~~~~~L~~~~ 492 (505)
||++.++|.++..+. ..++||+|.+++
T Consensus 76 iG~~~i~l~~l~~~~~~~~~~w~~L~~~g 104 (105)
T cd04050 76 LGSLTLPLSELLKEPDLTLDQPFPLDNSG 104 (105)
T ss_pred cEEEEEEHHHhhccccceeeeeEecCCCC
Confidence 999999999998754 678999998653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-16 Score=140.06 Aligned_cols=106 Identities=37% Similarity=0.565 Sum_probs=90.0
Q ss_pred CCcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeec--------------------------ceeeeeeeCCCCC
Q 038990 256 AIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERI--------------------------PAKKTSVKMKTLN 309 (505)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~--------------------------~~~~T~~~~~t~n 309 (505)
....+.+.|.|+|++|+||..+|..|.+||||++++.+... ..++|+++++++|
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 35668999999999999999999999999999999864311 2368999999999
Q ss_pred CeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 310 PEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 310 P~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
|.|||+|.|.+.....+.|.|+|||++ +++||++.++++++.. ...+.|++|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999999997766789999999997 8999999999999983 345666654
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.9e-16 Score=133.73 Aligned_cols=100 Identities=26% Similarity=0.403 Sum_probs=86.7
Q ss_pred CeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCC
Q 038990 260 PVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVG 339 (505)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~ 339 (505)
|.++|+|+|++|++|+..+..|.+||||+++++++. .+|++++++.||+|||+|.|.+.+. ...|.++|||++..
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~- 75 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGES---VRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL- 75 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEE---EEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-
Confidence 468999999999999999988999999999998765 5899999999999999999988654 67899999999876
Q ss_pred CCcccEEEEEECccCCCCCeeEEEE
Q 038990 340 THDKLGMQVVPLRSLTPNETKELTL 364 (505)
Q Consensus 340 ~d~~lG~~~i~l~~l~~~~~~~~~l 364 (505)
+|++||++.+++.++.....+++++
T Consensus 76 ~d~~lG~~~~~l~~~~~~~~~~~~l 100 (126)
T cd04046 76 CDEFLGQATLSADPNDSQTLRTLPL 100 (126)
T ss_pred CCCceEEEEEecccCCCcCceEEEc
Confidence 5899999999999876555554444
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-16 Score=142.58 Aligned_cols=109 Identities=30% Similarity=0.377 Sum_probs=92.7
Q ss_pred cCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeecC---CCCEEEEEE
Q 038990 258 KKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKDP---ETQVLQLHV 332 (505)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~~---~~~~L~v~v 332 (505)
..+.|.|.|+|++|+||+..+..+.+||||++++.+. ...++||++++++.||.|||+|.|.+... ....|.++|
T Consensus 23 ~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V 102 (162)
T cd04020 23 KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTV 102 (162)
T ss_pred CCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEE
Confidence 3478999999999999999998899999999998542 23457999999999999999999985322 346799999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
||++..++|++||++.++++++........|+++
T Consensus 103 ~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 103 WDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred EeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 9999999999999999999999877666777665
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-16 Score=131.32 Aligned_cols=101 Identities=22% Similarity=0.258 Sum_probs=86.4
Q ss_pred EEEEeeecCCCCCCCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCccEE
Q 038990 389 KATEYGAKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGY 468 (505)
Q Consensus 389 ~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~lG~ 468 (505)
.|+|.+|++|+..+..||||++.+++.+.+|+++++ .||.|||.|.|.+.+. +..|.|+|||++ ..+|++||+
T Consensus 5 ~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~--~~~L~v~V~dkd----~~~DD~lG~ 77 (127)
T cd08394 5 CVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRL--DLGLVIELWNKG----LIWDTLVGT 77 (127)
T ss_pred EEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCC--CCEEEEEEEeCC----CcCCCceEE
Confidence 689999999998888899999999998889999988 5999999999999764 346999999987 458999999
Q ss_pred EEEeccccccCCE--EeEEEEeCC---CCCceE
Q 038990 469 VDINLHDVLHNGR--LKEKYHLIN---SKNGAV 496 (505)
Q Consensus 469 ~~i~L~~l~~~~~--~~~~~~L~~---~~~G~i 496 (505)
+.++|+++..+.. ..+||+|.. .++|++
T Consensus 78 v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~~ 110 (127)
T cd08394 78 VWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQI 110 (127)
T ss_pred EEEEhHHcccCCCCCCCccEecChHHhccCCeE
Confidence 9999999997653 379999973 235554
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.7e-17 Score=139.57 Aligned_cols=97 Identities=26% Similarity=0.321 Sum_probs=83.8
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeec--CCCCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKD--PETQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~--~~~~~L~v~v 332 (505)
+....+.|.|+|++|+||+..+..|.+||||++++.+. +..++||+++++++||+|||+|.|.+.. .....|.|+|
T Consensus 10 Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V 89 (136)
T cd08406 10 YLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTV 89 (136)
T ss_pred EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEE
Confidence 44566899999999999999998899999999999653 3335689999999999999999999864 3467899999
Q ss_pred EEcCCCCCCcccEEEEEECcc
Q 038990 333 YDWEKVGTHDKLGMQVVPLRS 353 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~ 353 (505)
||+|..+++++||++.++...
T Consensus 90 ~~~d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 90 AESTEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred EeCCCCCCCCeeEEEEECCCC
Confidence 999999999999999997764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-16 Score=134.79 Aligned_cols=101 Identities=30% Similarity=0.453 Sum_probs=87.7
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcc
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDK 343 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~ 343 (505)
|.|+|++|+||+. ..|.+||||+++++... ..++|++++++.||.|||+|.|.+.. ..+.|.|+|||++..++|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~-~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPP-QKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCC-cEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCce
Confidence 5799999999988 56899999999997422 24699999999999999999999853 46789999999999999999
Q ss_pred cEEEEEECccCCCCCeeEEEEeccc
Q 038990 344 LGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 344 lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
||++.++++++........|++|..
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~ 101 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQG 101 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecC
Confidence 9999999999998877777887753
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-16 Score=133.13 Aligned_cols=104 Identities=29% Similarity=0.485 Sum_probs=90.7
Q ss_pred EEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCC
Q 038990 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTH 341 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d 341 (505)
|.|+|+|++|++|+..+..+.+||||++++++.. .++|++++++.||.|||+|.|.+... .+.|.|+|||++..++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d 77 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIV--KGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKD 77 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEE--eeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence 6899999999999999988999999999997643 36889999999999999999988654 47899999999999999
Q ss_pred cccEEEEEECccCCCCCeeEEEEecccc
Q 038990 342 DKLGMQVVPLRSLTPNETKELTLDLVKN 369 (505)
Q Consensus 342 ~~lG~~~i~l~~l~~~~~~~~~l~l~~~ 369 (505)
++||++.+++.++..+ ..+.|+.+...
T Consensus 78 ~~IG~~~~~l~~l~~~-~~~~~~~~~~~ 104 (120)
T cd04045 78 RSLGSVEINVSDLIKK-NEDGKYVEYDD 104 (120)
T ss_pred CeeeEEEEeHHHhhCC-CCCceEEecCC
Confidence 9999999999999877 55666666554
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.4e-16 Score=138.35 Aligned_cols=105 Identities=30% Similarity=0.457 Sum_probs=91.3
Q ss_pred eEEEEEEEeeccCccccC------------------------------CCCCCCcEEEEEECCeecceeeeeeeCCCCCC
Q 038990 261 VGILHVKVIRAIRLLKMD------------------------------IFGASDPYVQLSLSGERIPAKKTSVKMKTLNP 310 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d------------------------------~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP 310 (505)
.|.|.|+|++|++|+.+| ..|.+||||++++++.+. .||++++++.||
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~--~rT~v~~~~~nP 83 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARV--ARTRVIENSENP 83 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEe--eEEEEeCCCCCC
Confidence 599999999999999987 246789999999987653 589999999999
Q ss_pred eEceeEEEEeecCCCCEEEEEEEEcCCCCCCcccEEEEEECccCCCCCeeEEEEecccc
Q 038990 311 EWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKN 369 (505)
Q Consensus 311 ~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~ 369 (505)
.|||+|.|.+.+. .+.|.|+|||+|..+ +++||++.++++++..+...+.|++|...
T Consensus 84 ~WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~ 140 (158)
T cd04015 84 VWNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDS 140 (158)
T ss_pred ccceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCC
Confidence 9999999998654 468999999999774 68999999999999988888899988653
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-16 Score=138.35 Aligned_cols=109 Identities=20% Similarity=0.289 Sum_probs=88.5
Q ss_pred CcCCeEEEEEEEeeccCccccCC--CCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDI--FGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQL 330 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v 330 (505)
+....+.|.|+|++|+||+..|. .+.+||||++++.++ +..++||+++++++||+|||+|.|.+... ....|.+
T Consensus 10 Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~ 89 (138)
T cd08407 10 YLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVEL 89 (138)
T ss_pred EeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEE
Confidence 44567899999999999999983 345899999999764 34467999999999999999999998642 3567999
Q ss_pred EEEEcCCCCCCcccEEEEEECccCCCCCeeEEEEecc
Q 038990 331 HVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLV 367 (505)
Q Consensus 331 ~v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~ 367 (505)
+|||+|..+++++||++.+++.. .++....|.+++
T Consensus 90 ~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml 124 (138)
T cd08407 90 EVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEML 124 (138)
T ss_pred EEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHH
Confidence 99999999999999999999975 333344454443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.7e-16 Score=134.07 Aligned_cols=105 Identities=32% Similarity=0.458 Sum_probs=89.9
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCc
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHD 342 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~ 342 (505)
.|+|+|++|++|+..+..+.+||||++++.+.....++|++++++.||.|||+|.|.+.....+.|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 58999999999999998899999999998754333469999999999999999999997755678999999999888999
Q ss_pred ccEEEEEECccCCC---CCeeEEEEecc
Q 038990 343 KLGMQVVPLRSLTP---NETKELTLDLV 367 (505)
Q Consensus 343 ~lG~~~i~l~~l~~---~~~~~~~l~l~ 367 (505)
+||++.++++++.. +..+..|+++.
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~ 109 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLD 109 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcC
Confidence 99999999987543 33567788774
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-16 Score=136.50 Aligned_cols=93 Identities=38% Similarity=0.660 Sum_probs=84.7
Q ss_pred eEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCC
Q 038990 261 VGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGT 340 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~ 340 (505)
.|.|+|+|++|+||+..+. +.+||||+++++++. .+|++++++.||.|||+|.|.+.++ ...+.++|||++.+++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~---~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~ 75 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQK---VKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSK 75 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEE---EEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCC
Confidence 3899999999999999887 889999999998754 5899999999999999999999776 6789999999999999
Q ss_pred CcccEEEEEECccCCCCC
Q 038990 341 HDKLGMQVVPLRSLTPNE 358 (505)
Q Consensus 341 d~~lG~~~i~l~~l~~~~ 358 (505)
|++||++.+++.++....
T Consensus 76 dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 76 DDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCEEEEEEEEHHHhhhhh
Confidence 999999999999987653
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.9e-16 Score=132.10 Aligned_cols=103 Identities=21% Similarity=0.363 Sum_probs=87.9
Q ss_pred eEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCC
Q 038990 261 VGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGT 340 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~ 340 (505)
...|+|+|++|+||+.+ +.+||||++++++.+. .+|+++ ++.||.|||+|.|.+..+..+.+.+.|||++..++
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~--~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~ 76 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKV--ARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK 76 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeE--EEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence 45799999999999875 4689999999986442 578874 68999999999998765555689999999999999
Q ss_pred CcccEEEEEECccCCCCCeeEEEEecccc
Q 038990 341 HDKLGMQVVPLRSLTPNETKELTLDLVKN 369 (505)
Q Consensus 341 d~~lG~~~i~l~~l~~~~~~~~~l~l~~~ 369 (505)
|++||++.+++.++..+...+.|++|.+.
T Consensus 77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~ 105 (126)
T cd08400 77 DSEIAEVTVQLSKLQNGQETDEWYPLSSA 105 (126)
T ss_pred CCeEEEEEEEHhHccCCCcccEeEEcccC
Confidence 99999999999999988888889988654
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=131.65 Aligned_cols=109 Identities=22% Similarity=0.365 Sum_probs=94.0
Q ss_pred EEEEEeeecCCCCC-------------CCCCCEEEEEEcCeE-EEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEE
Q 038990 388 GKATEYGAKDLEGK-------------HHNNPYAVVICRGEQ-KKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKS 453 (505)
Q Consensus 388 a~v~v~~a~~L~~~-------------~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d 453 (505)
++|+|++|++|... +.+||||+++++++. .+|++++++.||.|||+|+|.+.+ .+.+.|.|++
T Consensus 6 l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~---~~~l~~~v~d 82 (132)
T cd04014 6 LKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN---GRNLELTVFH 82 (132)
T ss_pred EEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC---CCEEEEEEEe
Confidence 47999999999642 368999999998866 599999999999999999999964 3689999999
Q ss_pred ccCCccCCCCCccEEEEEecccccc--CCEEeEEEEeCCCCCceEEEEEEEEe
Q 038990 454 KRRGLRLRSKESLGYVDINLHDVLH--NGRLKEKYHLINSKNGAVQVEIKWKA 504 (505)
Q Consensus 454 ~~~~~~~~~d~~lG~~~i~L~~l~~--~~~~~~~~~L~~~~~G~i~l~~~~~~ 504 (505)
++. .+.++++|++.++|+++.. +...+.||+|. ++|+|+|+++|+.
T Consensus 83 ~~~---~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l~l~~~~~~ 130 (132)
T cd04014 83 DAA---IGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKLHVKIELKG 130 (132)
T ss_pred CCC---CCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEEEEEEEEec
Confidence 874 6778999999999999987 45668999997 5799999999974
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.5e-16 Score=129.61 Aligned_cols=100 Identities=24% Similarity=0.241 Sum_probs=83.9
Q ss_pred EEEEeeecCCCCC--CCCCCEEEEEEcC-------eEEEeecccCCCCCccCceEEEEeeCCC--CCCeEEEEEEEccCC
Q 038990 389 KATEYGAKDLEGK--HHNNPYAVVICRG-------EQKKTKMIKKCRDPIWNEEFQFDFEEAP--LKEKIHIEVKSKRRG 457 (505)
Q Consensus 389 ~v~v~~a~~L~~~--~~~dpyv~v~~~~-------~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~l~i~V~d~~~~ 457 (505)
+|+|.+|++|+.. |.+||||++++.+ ++++|+++.++.||+|||+|+|.+.+.. ....|.+.|+|++.
T Consensus 3 ~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~- 81 (120)
T cd08395 3 TVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCF- 81 (120)
T ss_pred EEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecc-
Confidence 6899999999764 6899999999842 2358999999999999999999997532 22369999999873
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEeCCC
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHLINS 491 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 491 (505)
.+.+++||++.++|+++..++....|++|...
T Consensus 82 --~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 82 --ARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred --cCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 56789999999999999998888999999653
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.9e-16 Score=132.62 Aligned_cols=93 Identities=30% Similarity=0.513 Sum_probs=83.0
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCc
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHD 342 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~ 342 (505)
+|+|+|++|++|+..|..|.+||||++++++... ..+|++++++.||.|||+|.|.+..+..+.|.++|||++..++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~-~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKI-NDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeec-cceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence 4799999999999999889999999999987653 357788889999999999999987777789999999999999999
Q ss_pred ccEEEEEECccCCC
Q 038990 343 KLGMQVVPLRSLTP 356 (505)
Q Consensus 343 ~lG~~~i~l~~l~~ 356 (505)
+||++.+++++..-
T Consensus 80 ~iG~~~i~l~~~~~ 93 (124)
T cd04037 80 LIGETVIDLEDRFF 93 (124)
T ss_pred eeEEEEEeeccccc
Confidence 99999999987653
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.6e-16 Score=131.76 Aligned_cols=102 Identities=24% Similarity=0.423 Sum_probs=88.5
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcc
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDK 343 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~ 343 (505)
|.|+|++|++|++++..|.+||||++.+++... .+|+++++++||.|||+|.|.+.. ..+.|.++|||++..++|++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~--~kT~v~~~t~nP~Wne~f~~~~~~-~~~~l~v~v~d~~~~~~d~~ 78 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVI--IRTATVWKTLNPFWGEEYTVHLPP-GFHTVSFYVLDEDTLSRDDV 78 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEee--eeeeeEcCCCCCcccceEEEeeCC-CCCEEEEEEEECCCCCCCCE
Confidence 789999999999999999999999999986542 589999999999999999999854 34789999999999999999
Q ss_pred cEEEEEECccCCCC-CeeEEEEeccc
Q 038990 344 LGMQVVPLRSLTPN-ETKELTLDLVK 368 (505)
Q Consensus 344 lG~~~i~l~~l~~~-~~~~~~l~l~~ 368 (505)
||++.++++++..+ ...+.|++|..
T Consensus 79 iG~~~~~~~~~~~~~~~~~~W~~L~~ 104 (121)
T cd04054 79 IGKVSLTREVISAHPRGIDGWMNLTE 104 (121)
T ss_pred EEEEEEcHHHhccCCCCCCcEEECee
Confidence 99999999888754 23567888753
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-16 Score=138.72 Aligned_cols=110 Identities=34% Similarity=0.465 Sum_probs=91.0
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v 332 (505)
+....|.|.|+|++|+||+..+..|.+||||++++.+. +...++|+++++++||.|||+|.|.+... ....|.++|
T Consensus 8 y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V 87 (133)
T cd08384 8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV 87 (133)
T ss_pred EcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence 45567999999999999999998899999999999653 23346999999999999999999998643 356899999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCCeeEEEEeccc
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
||+|..+++++||++.+++.. .++....|+++.+
T Consensus 88 ~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 88 WDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred EeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 999998899999999999986 3334455666544
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.9e-16 Score=135.18 Aligned_cols=93 Identities=33% Similarity=0.594 Sum_probs=81.5
Q ss_pred EEEEEEeeccCccccCCCC--------------CCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecC-CCCE
Q 038990 263 ILHVKVIRAIRLLKMDIFG--------------ASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP-ETQV 327 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g--------------~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~-~~~~ 327 (505)
.|.|+|++|++|+.+|..+ .+||||++.+++.+ .+|+++++++||+|||+|.|.+..+ ..+.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~---~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQK---VKTSVKKNSYNPEWNEQIVFPEMFPPLCER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEe---eecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence 3789999999999988543 68999999999865 4899999999999999999997644 3568
Q ss_pred EEEEEEEcCCCCCCcccEEEEEECccCCCCC
Q 038990 328 LQLHVYDWEKVGTHDKLGMQVVPLRSLTPNE 358 (505)
Q Consensus 328 L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~~ 358 (505)
|.++|||+|..++|++||++.+++.++....
T Consensus 78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEEEEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence 9999999999999999999999999887654
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.9e-16 Score=129.75 Aligned_cols=103 Identities=46% Similarity=0.692 Sum_probs=92.4
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcc
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDK 343 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~ 343 (505)
|+|+|++|++|+..+..+.+||||++++++.. .++|+++.++.||.|||+|.|.+.+...+.+.++|||++..+++++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~--~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~ 78 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEK--VFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDL 78 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCc--ceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCc
Confidence 57999999999999888899999999997643 3689999999999999999999976667889999999998889999
Q ss_pred cEEEEEECccCCCCCeeEEEEeccc
Q 038990 344 LGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 344 lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
||++.+++.++..+.....|++|..
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~ 103 (115)
T cd04040 79 LGSAYIDLSDLEPEETTELTLPLDG 103 (115)
T ss_pred eEEEEEEHHHcCCCCcEEEEEECcC
Confidence 9999999999998888889998864
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.4e-16 Score=132.62 Aligned_cols=104 Identities=34% Similarity=0.518 Sum_probs=90.4
Q ss_pred EEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeC-CCCCCeEceeEEEEeecC---CCCEEEEEEEEcCC
Q 038990 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKM-KTLNPEWNEDFKLTVKDP---ETQVLQLHVYDWEK 337 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~-~t~nP~wne~f~~~v~~~---~~~~L~v~v~d~d~ 337 (505)
|.|.|+|++|++|+..+..+.+||||++++++.. ++|++.+ ++.||.|||+|.|.+..+ ..+.|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~---~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQE---RKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEe---eeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 6899999999999999888899999999998654 4777776 489999999999999775 35789999999999
Q ss_pred CCCCcccEEEEEECccCCCCCeeEEEEeccc
Q 038990 338 VGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
.++|++||++.+++.++..+.....|+++..
T Consensus 78 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 78 FSDDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CCCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 8899999999999999988777777777644
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=135.39 Aligned_cols=96 Identities=21% Similarity=0.462 Sum_probs=82.5
Q ss_pred CCCCCEEEEEEcCeE-EEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCccEEEEEeccccccCC
Q 038990 402 HHNNPYAVVICRGEQ-KKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNG 480 (505)
Q Consensus 402 ~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~ 480 (505)
+.+||||++++++.+ .+|++++++.||+|||+|.|.+... .+.|.++|+|++. . ++++||++.++++++..+.
T Consensus 56 g~sDPYv~V~l~~~~~~rT~v~~~~~nP~WnE~F~~~~~~~--~~~l~~~V~d~d~---~-~~~~IG~~~i~l~~l~~g~ 129 (158)
T cd04015 56 ITSDPYATVDLAGARVARTRVIENSENPVWNESFHIYCAHY--ASHVEFTVKDNDV---V-GAQLIGRAYIPVEDLLSGE 129 (158)
T ss_pred CCcCeEEEEEECCeEeeEEEEeCCCCCCccceEEEEEccCC--CCEEEEEEEeCCC---c-CCcEEEEEEEEhHHccCCC
Confidence 357999999998866 4999999999999999999998654 3589999999873 3 5689999999999999888
Q ss_pred EEeEEEEeCCC------CCceEEEEEEEE
Q 038990 481 RLKEKYHLINS------KNGAVQVEIKWK 503 (505)
Q Consensus 481 ~~~~~~~L~~~------~~G~i~l~~~~~ 503 (505)
..++||+|.+. +.|+|+|+++|.
T Consensus 130 ~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 130 PVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred CcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 88999999753 268999999984
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.5e-16 Score=131.10 Aligned_cols=100 Identities=44% Similarity=0.611 Sum_probs=87.9
Q ss_pred EEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCC
Q 038990 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTH 341 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d 341 (505)
|.|.|+|++|++|+..+..+.+||||++++++.. .+|++++++.||.|||+|.|.+.+. .+.+.++|||++..+++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~ 76 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNAR---LQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKP 76 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEe---eecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCC
Confidence 6899999999999999988999999999998754 5899999999999999999998653 57899999999988899
Q ss_pred cccEEEEEECccCCCCCeeEEEEecc
Q 038990 342 DKLGMQVVPLRSLTPNETKELTLDLV 367 (505)
Q Consensus 342 ~~lG~~~i~l~~l~~~~~~~~~l~l~ 367 (505)
++||++.+++.++..+..+ |+.|.
T Consensus 77 ~~iG~~~~~l~~~~~~~~~--~~~l~ 100 (119)
T cd08377 77 EFLGKVAIPLLSIKNGERK--WYALK 100 (119)
T ss_pred ceeeEEEEEHHHCCCCCce--EEECc
Confidence 9999999999999876544 55554
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.5e-16 Score=131.77 Aligned_cols=100 Identities=32% Similarity=0.544 Sum_probs=85.6
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCC--C
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGT--H 341 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~--d 341 (505)
|+|+|++|++|+..+..+.+||||++++++.. .++|+++++++||.|||+|.|.+.. .+.|.++|||++..++ |
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~--~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d 77 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQ--THSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQ 77 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCcc--ceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCC
Confidence 78999999999999988999999999997532 3689999999999999999999965 6799999999998775 5
Q ss_pred cccEEEEEECccCCCCC-eeEEEEecc
Q 038990 342 DKLGMQVVPLRSLTPNE-TKELTLDLV 367 (505)
Q Consensus 342 ~~lG~~~i~l~~l~~~~-~~~~~l~l~ 367 (505)
++||++.++++++.... ....|+++.
T Consensus 78 ~~lG~~~i~l~~l~~~~~~~~~~~~l~ 104 (123)
T cd08382 78 GFLGCVRIRANAVLPLKDTGYQRLDLR 104 (123)
T ss_pred ceEeEEEEEHHHccccCCCccceeEee
Confidence 79999999999987554 335576663
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.5e-16 Score=132.34 Aligned_cols=99 Identities=25% Similarity=0.280 Sum_probs=83.7
Q ss_pred eEEEEEeeecCCCC--CCCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEe-eCCC-CCCeEEEEEEEccCC
Q 038990 387 VGKATEYGAKDLEG--KHHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDF-EEAP-LKEKIHIEVKSKRRG 457 (505)
Q Consensus 387 ~a~v~v~~a~~L~~--~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v-~~~~-~~~~l~i~V~d~~~~ 457 (505)
...|.|++|++|+. .+.+||||++++.+ .++||++++++.||+|||+|.|.+ .... .+..|.++|||++.
T Consensus 14 ~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~- 92 (122)
T cd08381 14 TLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDS- 92 (122)
T ss_pred EEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCC-
Confidence 35899999999976 35899999999963 356999999999999999999987 3221 23589999999984
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEe
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHL 488 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 488 (505)
++++++||++.++|+++..+.....||+|
T Consensus 93 --~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 93 --LVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred --CcCCcEEEEEEEeccccccCCCccceEEC
Confidence 67899999999999999987777899987
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-16 Score=134.61 Aligned_cols=101 Identities=33% Similarity=0.530 Sum_probs=87.1
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCee----cceeeeeeeCCCCCCeEceeEEEEeecC----CCCEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER----IPAKKTSVKMKTLNPEWNEDFKLTVKDP----ETQVL 328 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~----~~~~~T~~~~~t~nP~wne~f~~~v~~~----~~~~L 328 (505)
+....+.|+|+|++|++|+..+..|.+||||++++.+.. ...++|+++++|+||.|||+|.|.+... ....|
T Consensus 11 y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l 90 (133)
T cd04009 11 YRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALL 90 (133)
T ss_pred EcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEE
Confidence 344568899999999999999888999999999997532 2357999999999999999999998652 35689
Q ss_pred EEEEEEcCCCCCCcccEEEEEECccCCCC
Q 038990 329 QLHVYDWEKVGTHDKLGMQVVPLRSLTPN 357 (505)
Q Consensus 329 ~v~v~d~d~~~~d~~lG~~~i~l~~l~~~ 357 (505)
.++|||++..+++++||++.++++++...
T Consensus 91 ~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 91 LFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 99999999999999999999999998854
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=130.21 Aligned_cols=108 Identities=22% Similarity=0.427 Sum_probs=92.9
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCc
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKES 465 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~ 465 (505)
+|+|.+|++|+.. +.+||||++++++...+|++++++.||+|||+|.|.+... ....|.|+|||++. .+.+++
T Consensus 3 ~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~~~v~d~~~---~~~~~~ 78 (123)
T cd04025 3 RCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEG-ADSPLSVEVWDWDL---VSKNDF 78 (123)
T ss_pred EEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCC-CCCEEEEEEEECCC---CCCCcE
Confidence 6899999999763 4789999999998888999999999999999999999875 24689999999984 677899
Q ss_pred cEEEEEeccccccCCEEeEEEEeCCC---------CCceEEEEE
Q 038990 466 LGYVDINLHDVLHNGRLKEKYHLINS---------KNGAVQVEI 500 (505)
Q Consensus 466 lG~~~i~L~~l~~~~~~~~~~~L~~~---------~~G~i~l~~ 500 (505)
||++.++|+++..+.....||.|... ..|.|++.+
T Consensus 79 iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 79 LGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred eEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 99999999999876666899999752 258888875
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.8e-16 Score=132.49 Aligned_cols=103 Identities=31% Similarity=0.475 Sum_probs=89.8
Q ss_pred eEEEEEEEeeccCccccCCC----------CCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEE
Q 038990 261 VGILHVKVIRAIRLLKMDIF----------GASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQL 330 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~----------g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v 330 (505)
.|.|+|+|++|++|+..+.. +.+||||++++++... .+|++++++.||.|||+|.|.+. ....|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~--~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~ 78 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHI--GKTSTKPKTNSPVWNEEFTTEVH--NGRNLEL 78 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEE--eEEeEcCCCCCCCcceeEEEEcC--CCCEEEE
Confidence 48999999999999988852 5789999999987653 58899999999999999999996 3578999
Q ss_pred EEEEcCCCCCCcccEEEEEECccCCC--CCeeEEEEecc
Q 038990 331 HVYDWEKVGTHDKLGMQVVPLRSLTP--NETKELTLDLV 367 (505)
Q Consensus 331 ~v~d~d~~~~d~~lG~~~i~l~~l~~--~~~~~~~l~l~ 367 (505)
.|||++..++++++|++.++|+++.. +...+.|++|.
T Consensus 79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~ 117 (132)
T cd04014 79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE 117 (132)
T ss_pred EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc
Confidence 99999988899999999999999887 45667888774
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.8e-16 Score=131.48 Aligned_cols=98 Identities=27% Similarity=0.367 Sum_probs=84.2
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCc
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHD 342 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~ 342 (505)
.|.|+|++|+||+.+ .+||||++++++.. .+|++++++.||.|||+|.|.+..+....|.++|||++.. +++
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~---~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~ 72 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYK---GSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDD 72 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCcc---ccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCc
Confidence 489999999999887 68999999998643 5899999999999999999998776678999999999976 899
Q ss_pred ccEEEEEECccCCCCC-----eeEEEEeccc
Q 038990 343 KLGMQVVPLRSLTPNE-----TKELTLDLVK 368 (505)
Q Consensus 343 ~lG~~~i~l~~l~~~~-----~~~~~l~l~~ 368 (505)
+||++.++++++.... ....|++|..
T Consensus 73 ~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~ 103 (121)
T cd08378 73 FLGGVCFDLSEVPTRVPPDSPLAPQWYRLED 103 (121)
T ss_pred eeeeEEEEhHhCcCCCCCCCCCCcceEEccC
Confidence 9999999999987542 2346777754
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=132.85 Aligned_cols=99 Identities=24% Similarity=0.316 Sum_probs=83.7
Q ss_pred EEEEEeeecCCCCC----CCCCCEEEEEEcCe-----EEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEE-ccCC
Q 038990 388 GKATEYGAKDLEGK----HHNNPYAVVICRGE-----QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKS-KRRG 457 (505)
Q Consensus 388 a~v~v~~a~~L~~~----~~~dpyv~v~~~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d-~~~~ 457 (505)
..|+|++|+||... +.+||||++++... ++||+++++|.||+|||+|.|.+. . .+..|.++||+ ++
T Consensus 31 L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l-~~~~L~v~V~~d~~-- 106 (146)
T cd04028 31 LEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-P-TGKTLQVIVWGDYG-- 106 (146)
T ss_pred EEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-C-CCCEEEEEEEeCCC--
Confidence 47999999999652 47899999999542 569999999999999999999998 2 45689999995 44
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEeCCC
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHLINS 491 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 491 (505)
.+.++++||.+.++|+++..+.....||+|...
T Consensus 107 -~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 107 -RMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred -CCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 267889999999999998766677899999865
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=127.66 Aligned_cols=98 Identities=19% Similarity=0.262 Sum_probs=81.7
Q ss_pred EEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCC
Q 038990 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTH 341 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d 341 (505)
+.|.|+|++|++|+.++ ..||||++.+++.+ .+|++.++ .||.|||+|.|.+.+.. ..|.++|||+|.. .|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k---~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~-~D 72 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVK---STTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLI-WD 72 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEE---eEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCc-CC
Confidence 68999999999997654 46999999998765 48888877 59999999999997644 4599999999854 89
Q ss_pred cccEEEEEECccCCCCCee--EEEEeccc
Q 038990 342 DKLGMQVVPLRSLTPNETK--ELTLDLVK 368 (505)
Q Consensus 342 ~~lG~~~i~l~~l~~~~~~--~~~l~l~~ 368 (505)
|+||++.++|+++..+... ..|++|..
T Consensus 73 D~lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 73 TLVGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred CceEEEEEEhHHcccCCCCCCCccEecCh
Confidence 9999999999998866544 57777754
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=132.64 Aligned_cols=108 Identities=27% Similarity=0.390 Sum_probs=92.0
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEECCe-ecceeeeeeeCCCCCCeEceeEEEEeecC---------------CCCE
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGE-RIPAKKTSVKMKTLNPEWNEDFKLTVKDP---------------ETQV 327 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~-~~~~~~T~~~~~t~nP~wne~f~~~v~~~---------------~~~~ 327 (505)
|+|+|++|++|+.+ ..|.+||||++++++. ....++|+++.++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 7789999999999841 12346999999999999999999998765 4578
Q ss_pred EEEEEEEcCCCCCCcccEEEEEECccCCCCCeeEEEEeccccCCC
Q 038990 328 LQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNP 372 (505)
Q Consensus 328 L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~ 372 (505)
|.++|||++..+++++||++.+++.++........|++|.+...+
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~~ 124 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPREAP 124 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcCCC
Confidence 999999999888999999999999999877777888888765433
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=132.58 Aligned_cols=104 Identities=41% Similarity=0.595 Sum_probs=87.6
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECCee----cceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCC
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER----IPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKV 338 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~----~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~ 338 (505)
.|+|+|++|++|+.++..|.+||||++++.+.. ....+|++++++.||.|||+|.|.+.. ....|.++|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNP-REHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcC-CCCEEEEEEEECCCC
Confidence 389999999999999988999999999997641 224689999999999999999999864 356899999999999
Q ss_pred CCCcccEEEEEECccCCCCCe------eEEEEecc
Q 038990 339 GTHDKLGMQVVPLRSLTPNET------KELTLDLV 367 (505)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~~~~------~~~~l~l~ 367 (505)
+++++||++.++++++..+.. ...|++|.
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~ 114 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLR 114 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeee
Confidence 999999999999999886543 23566654
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=127.48 Aligned_cols=98 Identities=27% Similarity=0.368 Sum_probs=83.9
Q ss_pred EEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCC----CCEEEEEEEEcCC
Q 038990 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPE----TQVLQLHVYDWEK 337 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~----~~~L~v~v~d~d~ 337 (505)
..|+|+|++|++|+ .|.+||||++++++++ ++|++++++.||.|||+|.|.+..+. ...|.++|||++.
T Consensus 4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~---~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 4 FQVRVRVIEARQLV----GGNIDPVVKVEVGGQK---KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred EEEEEEEEEcccCC----CCCCCCEEEEEECCEe---eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 57899999999998 4789999999999764 58999999999999999999986432 4689999999999
Q ss_pred CCCCcccEEEEEECccCCCCCee---EEEEec
Q 038990 338 VGTHDKLGMQVVPLRSLTPNETK---ELTLDL 366 (505)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~~~~---~~~l~l 366 (505)
.++|++||++.++++++..+..+ ..|++|
T Consensus 77 ~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L 108 (111)
T cd04011 77 LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLL 108 (111)
T ss_pred cccCCccEEEEECCccccCCCCCcceEEEEEe
Confidence 88999999999999999776443 456665
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=127.44 Aligned_cols=99 Identities=23% Similarity=0.446 Sum_probs=86.2
Q ss_pred EEEEeeecCCCC----CCCCCCEEEEEEcCeEEEeecccCCCCCcc-CceEEEEeeCCCC-CCeEEEEEEEccCCccCCC
Q 038990 389 KATEYGAKDLEG----KHHNNPYAVVICRGEQKKTKMIKKCRDPIW-NEEFQFDFEEAPL-KEKIHIEVKSKRRGLRLRS 462 (505)
Q Consensus 389 ~v~v~~a~~L~~----~~~~dpyv~v~~~~~~~kT~v~~~t~nP~w-ne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~ 462 (505)
+|+|++|++|+. .+.+||||++++++..++|++++++.||+| ||.|.|.+..... ++.|.|+|||++. .++
T Consensus 2 ~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~---~~~ 78 (110)
T cd08688 2 KVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT---YSA 78 (110)
T ss_pred EEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC---CCC
Confidence 589999999975 247899999999998889999999999999 9999999976533 3589999999984 678
Q ss_pred CCccEEEEEecccccc---CCEEeEEEEeCC
Q 038990 463 KESLGYVDINLHDVLH---NGRLKEKYHLIN 490 (505)
Q Consensus 463 d~~lG~~~i~L~~l~~---~~~~~~~~~L~~ 490 (505)
+++||++.+++.++.. +...++||+|.+
T Consensus 79 ~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 79 NDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 8999999999999988 345789999976
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-15 Score=129.22 Aligned_cols=112 Identities=21% Similarity=0.373 Sum_probs=93.6
Q ss_pred EEEEEeeecCCCCC----CCCCCEEEEEEcC--eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCC
Q 038990 388 GKATEYGAKDLEGK----HHNNPYAVVICRG--EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLR 461 (505)
Q Consensus 388 a~v~v~~a~~L~~~----~~~dpyv~v~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~ 461 (505)
.+|+|.+|++|+.. +.+||||++++++ ..++|++++++.||.|||.|.|.+.. ..+.|.++|||++. .+
T Consensus 4 l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~--~~~~l~~~v~d~~~---~~ 78 (124)
T cd04044 4 LAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS--LTEPLNLTVYDFND---KR 78 (124)
T ss_pred EEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC--CCCEEEEEEEecCC---CC
Confidence 37899999999842 3689999999988 66799999999999999999999873 35789999999984 67
Q ss_pred CCCccEEEEEeccccccCCEEeE-EEEeC--CCCCceEEEEEEEEe
Q 038990 462 SKESLGYVDINLHDVLHNGRLKE-KYHLI--NSKNGAVQVEIKWKA 504 (505)
Q Consensus 462 ~d~~lG~~~i~L~~l~~~~~~~~-~~~L~--~~~~G~i~l~~~~~~ 504 (505)
++++||++.++|.++........ ++.+. +...|+|+++++|.|
T Consensus 79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 KDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCceeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence 89999999999999998765543 44443 334899999999987
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.7e-16 Score=130.79 Aligned_cols=99 Identities=29% Similarity=0.448 Sum_probs=86.8
Q ss_pred EeeccCccccCCCCCCCcEEEEEECCee----cceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCC----CC
Q 038990 268 VIRAIRLLKMDIFGASDPYVQLSLSGER----IPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEK----VG 339 (505)
Q Consensus 268 v~~a~~L~~~d~~g~~dpyv~v~l~~~~----~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~----~~ 339 (505)
.++|++|+..+..|.+||||++++.+.. ...++|+++++++||.|||+|.|.+.....+.|.++|||+|. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 3789999999988999999999997653 224699999999999999999998765556789999999997 78
Q ss_pred CCcccEEEEEECccCCCCCeeEEEEec
Q 038990 340 THDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 340 ~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
++++||++.++++++..+.....+++|
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l 112 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPL 112 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEc
Confidence 999999999999999988878888877
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.8e-16 Score=130.51 Aligned_cols=99 Identities=20% Similarity=0.331 Sum_probs=83.2
Q ss_pred EEEEEeeecCCCCC--CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccC
Q 038990 388 GKATEYGAKDLEGK--HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRL 460 (505)
Q Consensus 388 a~v~v~~a~~L~~~--~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~ 460 (505)
..|+|++|+||+.. +.+||||++++.. .++||++++++.||+|||+|.|.+........+.++||+++.. .
T Consensus 14 L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~--~ 91 (119)
T cd08685 14 LTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK--S 91 (119)
T ss_pred EEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC--c
Confidence 48999999999764 5789999999964 2459999999999999999999997654445799999998741 2
Q ss_pred CCCCccEEEEEeccccccCCEEeEEEEe
Q 038990 461 RSKESLGYVDINLHDVLHNGRLKEKYHL 488 (505)
Q Consensus 461 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L 488 (505)
.++++||.+.++|.++..++...+||.|
T Consensus 92 ~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 92 RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCEEEEEEEecHHHhccCccccceEeC
Confidence 3578999999999999877778999986
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-15 Score=132.64 Aligned_cols=104 Identities=27% Similarity=0.373 Sum_probs=89.2
Q ss_pred EEEEeeecCCCCC-----------------CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEE
Q 038990 389 KATEYGAKDLEGK-----------------HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEV 451 (505)
Q Consensus 389 ~v~v~~a~~L~~~-----------------~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V 451 (505)
.|+|++|++|+.. +.+||||++.+++++.+|++++++.||+|||+|.|.+..++..+.|.|+|
T Consensus 3 ~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~v 82 (151)
T cd04018 3 IFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQI 82 (151)
T ss_pred EEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEEE
Confidence 6899999999863 25899999999999999999999999999999999987665567899999
Q ss_pred EEccCCccCCCCCccEEEEEeccccccCCE-------EeEEEEeCCCCCce
Q 038990 452 KSKRRGLRLRSKESLGYVDINLHDVLHNGR-------LKEKYHLINSKNGA 495 (505)
Q Consensus 452 ~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~-------~~~~~~L~~~~~G~ 495 (505)
||++. .++|++||++.++++++...+. ...|+.|.++..+.
T Consensus 83 ~D~d~---~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~ 130 (151)
T cd04018 83 RDWDR---VGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREY 130 (151)
T ss_pred EECCC---CCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCcccc
Confidence 99984 6789999999999999887552 35899998876544
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-16 Score=136.83 Aligned_cols=108 Identities=31% Similarity=0.441 Sum_probs=88.4
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v 332 (505)
+....+.|.|+|++|+||+..|..|.+||||++++.+. ....++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 10 y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v 89 (136)
T cd08404 10 YQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLV 89 (136)
T ss_pred EeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 34467899999999999999998899999999998543 33356899999999999999999998632 345799999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
||+|..+++++||++.+++.. .+.....|.++
T Consensus 90 ~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l 121 (136)
T cd08404 90 LDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEV 121 (136)
T ss_pred EECCCCCCCccEEEEEECCcC--CCchHHHHHHH
Confidence 999999999999999999988 23334445544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=133.17 Aligned_cols=99 Identities=25% Similarity=0.294 Sum_probs=83.2
Q ss_pred EEEEeeecCCCC-CCCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeC-----------C--CC-CCeEE
Q 038990 389 KATEYGAKDLEG-KHHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEE-----------A--PL-KEKIH 448 (505)
Q Consensus 389 ~v~v~~a~~L~~-~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~-----------~--~~-~~~l~ 448 (505)
.|+|++|++|+. .+.+||||++++.+ ..++|+++++|.||+|||+|.|.+.. + .. ...|.
T Consensus 3 ~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~ 82 (148)
T cd04010 3 SVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELR 82 (148)
T ss_pred EEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEE
Confidence 689999999976 36899999999976 45699999999999999999999951 1 11 23799
Q ss_pred EEEEEccCCccCCCCCccEEEEEeccccccC-CEEeEEEEeCC
Q 038990 449 IEVKSKRRGLRLRSKESLGYVDINLHDVLHN-GRLKEKYHLIN 490 (505)
Q Consensus 449 i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~-~~~~~~~~L~~ 490 (505)
|+||+++. .+.+++||++.|+|.++... .....||+|..
T Consensus 83 i~V~d~~~---~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~ 122 (148)
T cd04010 83 VDLWHASM---GGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQP 122 (148)
T ss_pred EEEEcCCC---CCCCceeEEEEEecccccccCCcCcceeecCC
Confidence 99999984 57899999999999999886 56689999964
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-15 Score=130.10 Aligned_cols=98 Identities=16% Similarity=0.210 Sum_probs=82.1
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEEC--CeecceeeeeeeCCCC-CCeEceeEEEEeecCC-CCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLS--GERIPAKKTSVKMKTL-NPEWNEDFKLTVKDPE-TQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~--~~~~~~~~T~~~~~t~-nP~wne~f~~~v~~~~-~~~L~v~v 332 (505)
+....|.|+|+|++|+||++.+..+.+||||++++- +.+..++||+++++|+ ||.|||+|.|.+.... .-.|.++|
T Consensus 9 Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v 88 (135)
T cd08692 9 FQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKL 88 (135)
T ss_pred ecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEE
Confidence 455679999999999999988656677999999874 3445568999999996 6999999999997533 34688899
Q ss_pred EEcCCCCCCcccEEEEEECccC
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSL 354 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l 354 (505)
||++..+++++||++.++.++.
T Consensus 89 ~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 89 YSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred EeCCCCcCCceEEEEEECCccC
Confidence 9999999999999999999864
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-15 Score=129.71 Aligned_cols=109 Identities=36% Similarity=0.501 Sum_probs=91.9
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeecC---CCCEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKDP---ETQVLQLH 331 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~~---~~~~L~v~ 331 (505)
++...+.|+|+|++|++|+..+..+.+||||++++.+. +....+|++++++.||.|||+|.|..... ....+.++
T Consensus 10 y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~ 89 (123)
T cd04035 10 YDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLL 89 (123)
T ss_pred EeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEE
Confidence 44566899999999999999988889999999998532 23357999999999999999999963322 35689999
Q ss_pred EEEcCCCCCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 332 VYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 332 v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
|||++.. ++++||++.++++++..++.+++++.|
T Consensus 90 v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~~ 123 (123)
T cd04035 90 VLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNICL 123 (123)
T ss_pred EEEcCCc-CCeeEEEEEEEcccCCCCcceEeeccC
Confidence 9999987 899999999999999999888887753
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-15 Score=129.43 Aligned_cols=98 Identities=36% Similarity=0.494 Sum_probs=85.2
Q ss_pred eEEEEEEEeeccCccccC-CCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCC
Q 038990 261 VGILHVKVIRAIRLLKMD-IFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVG 339 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~ 339 (505)
.|.|+|+|++|++|+..+ ..+.+||||++++++. ...++|++++++.||.|||+|.|.+. ...+.|.++|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCC
Confidence 489999999999999765 3467899999999873 23369999999999999999999986 45789999999999988
Q ss_pred CCcccEEEEEECccCCCCCee
Q 038990 340 THDKLGMQVVPLRSLTPNETK 360 (505)
Q Consensus 340 ~d~~lG~~~i~l~~l~~~~~~ 360 (505)
+|++||++.+++.++......
T Consensus 79 ~d~~iG~~~~~l~~l~~~~~~ 99 (124)
T cd04044 79 KDKLIGTAEFDLSSLLQNPEQ 99 (124)
T ss_pred CCceeEEEEEEHHHhccCccc
Confidence 999999999999999977554
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.7e-15 Score=125.80 Aligned_cols=107 Identities=21% Similarity=0.390 Sum_probs=92.7
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCc
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKES 465 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~ 465 (505)
+|+|++|++|+.. +.+||||++++++...+|++++++.||.|||+|.|.+.+. .+.+.++|||++. .+++++
T Consensus 4 ~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~--~~~l~~~v~d~~~---~~~~~~ 78 (119)
T cd08377 4 QVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI--HDVLEVTVYDEDK---DKKPEF 78 (119)
T ss_pred EEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc--CCEEEEEEEECCC---CCCCce
Confidence 6889999999863 5789999999998888999999999999999999998653 4689999999984 578899
Q ss_pred cEEEEEeccccccCCEEeEEEEeCCC-----CCceEEEEEEE
Q 038990 466 LGYVDINLHDVLHNGRLKEKYHLINS-----KNGAVQVEIKW 502 (505)
Q Consensus 466 lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~~ 502 (505)
||++.+++.++..+. .+||+|.+. .+|+|.+++++
T Consensus 79 iG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 79 LGKVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eeEEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence 999999999987654 589999754 38999999886
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.3e-16 Score=135.84 Aligned_cols=109 Identities=35% Similarity=0.504 Sum_probs=88.0
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECC--eecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSG--ERIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~--~~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v 332 (505)
+....|.|+|+|++|++|++.+..|.+||||++++.+ .+...++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 9 y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v 88 (134)
T cd08403 9 YLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAV 88 (134)
T ss_pred EcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 4456799999999999999999889999999999853 233456899999999999999999988532 235699999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCCeeEEEEecc
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLV 367 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~ 367 (505)
||++..+++++||++.+++... +.....|.++.
T Consensus 89 ~d~~~~~~~~~IG~~~l~~~~~--~~~~~~w~~~~ 121 (134)
T cd08403 89 VDYDRVGHNELIGVCRVGPNAD--GQGREHWNEML 121 (134)
T ss_pred EECCCCCCCceeEEEEECCCCC--CchHHHHHHHH
Confidence 9999999999999999998733 33334454443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.7e-16 Score=133.54 Aligned_cols=98 Identities=33% Similarity=0.469 Sum_probs=84.6
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECC--eecceeeeeeeCCCCCCeEceeEEEEeec--CCCCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSG--ERIPAKKTSVKMKTLNPEWNEDFKLTVKD--PETQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~--~~~~~~~T~~~~~t~nP~wne~f~~~v~~--~~~~~L~v~v 332 (505)
+....|.|.|+|++|+||+..+..|.+||||++++.+ .....++|++++++.||.|||+|.|.+.. .....|.|+|
T Consensus 10 y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v 89 (136)
T cd08405 10 YNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 4556789999999999999999889999999999843 33345689999999999999999999753 2356899999
Q ss_pred EEcCCCCCCcccEEEEEECccC
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSL 354 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l 354 (505)
||++..+++++||++.+++.+.
T Consensus 90 ~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 90 MDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred EECCCCCCCcEeEEEEECCccC
Confidence 9999999999999999999876
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-15 Score=132.23 Aligned_cols=100 Identities=27% Similarity=0.384 Sum_probs=86.3
Q ss_pred CCcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe---ecceeeeeeeCCCCCCeEceeEEEEeec--CCCCEEEE
Q 038990 256 AIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE---RIPAKKTSVKMKTLNPEWNEDFKLTVKD--PETQVLQL 330 (505)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~---~~~~~~T~~~~~t~nP~wne~f~~~v~~--~~~~~L~v 330 (505)
.+....+.|.|+|++|+||+..+..|.+||||++++.+. ...++||++++++.||+|||+|.|.+.. ..+..|.|
T Consensus 9 ~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~ 88 (138)
T cd08408 9 EYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF 88 (138)
T ss_pred EEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence 456678999999999999999998899999999999642 2235699999999999999999999863 34668999
Q ss_pred EEEEcCCCCCCcccEEEEEECccCC
Q 038990 331 HVYDWEKVGTHDKLGMQVVPLRSLT 355 (505)
Q Consensus 331 ~v~d~d~~~~d~~lG~~~i~l~~l~ 355 (505)
+|||++..+++++||++.+++....
T Consensus 89 ~V~~~~~~~~~~~iG~v~l~~~~~~ 113 (138)
T cd08408 89 SVYNKRKMKRKEMIGWFSLGLNSSG 113 (138)
T ss_pred EEEECCCCCCCcEEEEEEECCcCCC
Confidence 9999999999999999999887544
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-15 Score=126.15 Aligned_cols=98 Identities=28% Similarity=0.395 Sum_probs=85.6
Q ss_pred EEEEeeecCCCCCCCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCC---CCeEEEEEEEccCCccCCCCCc
Q 038990 389 KATEYGAKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPL---KEKIHIEVKSKRRGLRLRSKES 465 (505)
Q Consensus 389 ~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~---~~~l~i~V~d~~~~~~~~~d~~ 465 (505)
+|+|++|++|. .+.+||||++++++++++|++++++.||.|||+|.|.+..+.. +..|.|+|||++. ++++++
T Consensus 7 ~V~v~~a~~L~-~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~---~~~~~~ 82 (111)
T cd04011 7 RVRVIEARQLV-GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS---LRSDTL 82 (111)
T ss_pred EEEEEEcccCC-CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc---cccCCc
Confidence 78999999998 5789999999999999999999999999999999999865421 3479999999984 677999
Q ss_pred cEEEEEeccccccC---CEEeEEEEeCC
Q 038990 466 LGYVDINLHDVLHN---GRLKEKYHLIN 490 (505)
Q Consensus 466 lG~~~i~L~~l~~~---~~~~~~~~L~~ 490 (505)
||++.++|+++... ....+||+|.+
T Consensus 83 iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 83 IGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cEEEEECCccccCCCCCcceEEEEEeeC
Confidence 99999999999775 34689999975
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.4e-16 Score=134.83 Aligned_cols=99 Identities=35% Similarity=0.557 Sum_probs=84.7
Q ss_pred CCcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECC--eecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEE
Q 038990 256 AIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSG--ERIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLH 331 (505)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~--~~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~ 331 (505)
.+....|.|.|+|++|++|+.++..|.+||||++++.+ .....++|+++++++||.|||+|.|.+... ....|.++
T Consensus 9 ~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~ 88 (136)
T cd08402 9 RYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVT 88 (136)
T ss_pred EEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 35567799999999999999999889999999999853 333456899999999999999999998632 23479999
Q ss_pred EEEcCCCCCCcccEEEEEECccC
Q 038990 332 VYDWEKVGTHDKLGMQVVPLRSL 354 (505)
Q Consensus 332 v~d~d~~~~d~~lG~~~i~l~~l 354 (505)
|||++.+++|++||++.+++...
T Consensus 89 v~d~~~~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 89 VLDYDRIGKNDPIGKVVLGCNAT 111 (136)
T ss_pred EEeCCCCCCCceeEEEEECCccC
Confidence 99999999999999999999764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.6e-15 Score=129.15 Aligned_cols=109 Identities=26% Similarity=0.429 Sum_probs=92.2
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCe-------EEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCc
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGE-------QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGL 458 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~-------~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~ 458 (505)
+|+|++|++|+.. +.+||||++++.+. .++|++++++.||.|||+|.|.+... ...|.++|||++.
T Consensus 3 ~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~~~v~d~~~-- 78 (133)
T cd04033 3 RVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR--EHRLLFEVFDENR-- 78 (133)
T ss_pred EEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC--CCEEEEEEEECCC--
Confidence 6899999999764 57999999999764 46899999999999999999998653 3589999999984
Q ss_pred cCCCCCccEEEEEeccccccCCE------EeEEEEeCCC-----CCceEEEEEEE
Q 038990 459 RLRSKESLGYVDINLHDVLHNGR------LKEKYHLINS-----KNGAVQVEIKW 502 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~------~~~~~~L~~~-----~~G~i~l~~~~ 502 (505)
.+.+++||++.++++++..+.. ..+||+|... ..|+|++++.|
T Consensus 79 -~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 79 -LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred -CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 6789999999999999887542 3589999842 37999999987
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=129.43 Aligned_cols=100 Identities=20% Similarity=0.320 Sum_probs=85.1
Q ss_pred eEEEEEeeecCCCC----CCCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccC
Q 038990 387 VGKATEYGAKDLEG----KHHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRR 456 (505)
Q Consensus 387 ~a~v~v~~a~~L~~----~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~ 456 (505)
...|.|++|+||+. .+.+||||++++.. .++||++++++.||+|||+|.|.+....+ +..|.|+|||++.
T Consensus 16 ~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~ 95 (125)
T cd04029 16 SLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDR 95 (125)
T ss_pred eEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC
Confidence 35899999999974 25799999999953 24699999999999999999999976433 3479999999984
Q ss_pred CccCCCCCccEEEEEeccccccCCEEeEEEEeC
Q 038990 457 GLRLRSKESLGYVDINLHDVLHNGRLKEKYHLI 489 (505)
Q Consensus 457 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 489 (505)
.+++++||++.++|.++..+.....||+|.
T Consensus 96 ---~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 96 ---FGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred ---CCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 678999999999999998888889999984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.6e-15 Score=126.11 Aligned_cols=108 Identities=19% Similarity=0.342 Sum_probs=91.0
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCeE-EEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCC
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGEQ-KKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKE 464 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~ 464 (505)
.|+|.+|++|+.. +.+||||+++++++. .+|++++++.||+|||.|.|.+... .+.|.++|||++. .+.++
T Consensus 3 ~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~--~~~l~v~v~d~~~---~~~d~ 77 (121)
T cd04054 3 YIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG--FHTVSFYVLDEDT---LSRDD 77 (121)
T ss_pred EEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC--CCEEEEEEEECCC---CCCCC
Confidence 6899999999753 589999999998765 5999999999999999999998653 3689999999984 67899
Q ss_pred ccEEEEEeccccccCC-EEeEEEEeCCCC-----CceEEEEEE
Q 038990 465 SLGYVDINLHDVLHNG-RLKEKYHLINSK-----NGAVQVEIK 501 (505)
Q Consensus 465 ~lG~~~i~L~~l~~~~-~~~~~~~L~~~~-----~G~i~l~~~ 501 (505)
+||++.++++++.... ..++|++|.+.. .|+|+++++
T Consensus 78 ~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 78 VIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 9999999999887643 468999997532 799998875
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.3e-15 Score=129.53 Aligned_cols=108 Identities=26% Similarity=0.274 Sum_probs=85.9
Q ss_pred EEEEEEEeeccCccccCCCCCCCcEEEEEE--CCeecceeeeeeeCCCCCCeEceeEEEEeecCC--------CCEEEEE
Q 038990 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPE--------TQVLQLH 331 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l--~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~--------~~~L~v~ 331 (505)
|.|.|....+.+|++.+..+.+||||++++ .+....+.||+++++|+||+|||+|.|.+.... ...|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 455555555555788887889999999997 323444679999999999999999999995431 4579999
Q ss_pred EEEcCCC-CCCcccEEEEEECccCCCCCeeEEEEecccc
Q 038990 332 VYDWEKV-GTHDKLGMQVVPLRSLTPNETKELTLDLVKN 369 (505)
Q Consensus 332 v~d~d~~-~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~ 369 (505)
|||++.+ ++|++||++.++|+.+........|++|...
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~ 122 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG 122 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC
Confidence 9999876 5799999999999999877666668888643
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.1e-15 Score=128.44 Aligned_cols=103 Identities=26% Similarity=0.428 Sum_probs=84.5
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecC---------CCCEEEEEEE
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP---------ETQVLQLHVY 333 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~---------~~~~L~v~v~ 333 (505)
.|+|+|++|++|+.+|..|.+||||++++++.. ++|+++++|.||.|||+|.|.+... ....+.++||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQS---QETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCee---eEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 589999999999999999999999999998654 5899999999999999999975432 1257999999
Q ss_pred EcCCCCCCcccEEEEE-ECccCC---CCCeeEEEEeccc
Q 038990 334 DWEKVGTHDKLGMQVV-PLRSLT---PNETKELTLDLVK 368 (505)
Q Consensus 334 d~d~~~~d~~lG~~~i-~l~~l~---~~~~~~~~l~l~~ 368 (505)
|+|..++|++||++.+ ++..+. .......|++|.+
T Consensus 79 d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~ 117 (135)
T cd04017 79 DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK 117 (135)
T ss_pred eCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec
Confidence 9999999999999987 444443 2355667887754
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.7e-15 Score=127.23 Aligned_cols=101 Identities=28% Similarity=0.526 Sum_probs=85.3
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCC----
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKV---- 338 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~---- 338 (505)
.|+|+|++|++|+..|..|.+||||++++++.. .+|++++++.||.|||+|.|.+..+ ...|.++|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~---~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTK---KRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEe---eecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence 589999999999999988999999999997643 5899999999999999999998654 46899999999852
Q ss_pred -------CCCcccEEEEEECccCCCCCeeEEEEecccc
Q 038990 339 -------GTHDKLGMQVVPLRSLTPNETKELTLDLVKN 369 (505)
Q Consensus 339 -------~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~ 369 (505)
+.+++||++.+++.++... ...|++|.+.
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~~--~~~w~~L~~~ 113 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSGE--MDVWYNLEKR 113 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccCC--CCeEEECccC
Confidence 4799999999999988644 3467776543
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.62 E-value=8e-15 Score=127.20 Aligned_cols=114 Identities=19% Similarity=0.256 Sum_probs=91.9
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCC--------CCCeEEEEEEEccCC
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAP--------LKEKIHIEVKSKRRG 457 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--------~~~~l~i~V~d~~~~ 457 (505)
+|+|++|++|+.. +.+||||++++++..++|+++++|.||.|||.|.|.+.... ....+.++|||++.
T Consensus 4 ~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~- 82 (135)
T cd04017 4 RAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDS- 82 (135)
T ss_pred EEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcC-
Confidence 6899999999763 58999999999998899999999999999999999854321 12469999999984
Q ss_pred ccCCCCCccEEEEE-ecccccc---CCEEeEEEEeCCC--CCceEEEEEEEEeC
Q 038990 458 LRLRSKESLGYVDI-NLHDVLH---NGRLKEKYHLINS--KNGAVQVEIKWKAI 505 (505)
Q Consensus 458 ~~~~~d~~lG~~~i-~L~~l~~---~~~~~~~~~L~~~--~~G~i~l~~~~~~~ 505 (505)
.+.+++||++.+ ++..+.. .....+||+|... ..|+|.|++++.++
T Consensus 83 --~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 83 --VGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV 134 (135)
T ss_pred --CCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence 678899999987 4444433 2456799999754 37999999999874
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-15 Score=131.18 Aligned_cols=98 Identities=34% Similarity=0.460 Sum_probs=81.7
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v 332 (505)
+....|.|.|+|++|++|+..|..|.+||||++++.+. ....++|+++++|.||.|||+|.|.+... ....|.|+|
T Consensus 9 y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V 88 (135)
T cd08410 9 YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTV 88 (135)
T ss_pred ECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEE
Confidence 44566899999999999999998899999999998432 23457899999999999999999998532 344799999
Q ss_pred EEcCCCCCCcccEEEEEECccC
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSL 354 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l 354 (505)
||+|..+++++||++.+.....
T Consensus 89 ~d~d~~~~~~~iG~~~l~~~~~ 110 (135)
T cd08410 89 YGHNVKSSNDFIGRIVIGQYSS 110 (135)
T ss_pred EeCCCCCCCcEEEEEEEcCccC
Confidence 9999999999999998765433
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-14 Score=127.76 Aligned_cols=113 Identities=20% Similarity=0.343 Sum_probs=91.2
Q ss_pred EEEEeeecCC--CC---CCCCCCEEEEEE--c---CeEEEeecccCCCCCccCceEEEEeeCCC------C-CCeEEEEE
Q 038990 389 KATEYGAKDL--EG---KHHNNPYAVVIC--R---GEQKKTKMIKKCRDPIWNEEFQFDFEEAP------L-KEKIHIEV 451 (505)
Q Consensus 389 ~v~v~~a~~L--~~---~~~~dpyv~v~~--~---~~~~kT~v~~~t~nP~wne~f~f~v~~~~------~-~~~l~i~V 451 (505)
.++|..|+++ +. .+.+||||++++ . ..+.||+++++|.||+|||+|.|.+.... . ...|.++|
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V 84 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV 84 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence 6788888884 43 357999999997 2 23569999999999999999999996541 1 23799999
Q ss_pred EEccCCccCCCCCccEEEEEeccccccCCEEeEEEEeCCC---CCceEEEEEEEE
Q 038990 452 KSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINS---KNGAVQVEIKWK 503 (505)
Q Consensus 452 ~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~---~~G~i~l~~~~~ 503 (505)
||++.. +.+|++||++.++|+.+..+....+|++|.++ .+|+|+++++-+
T Consensus 85 ~d~~~f--~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r 137 (155)
T cd08690 85 YHKGGF--LRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLR 137 (155)
T ss_pred EeCCCc--ccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEec
Confidence 999841 35799999999999999887777889999854 279999999865
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-15 Score=129.00 Aligned_cols=99 Identities=21% Similarity=0.324 Sum_probs=83.8
Q ss_pred EEEEEeeecCCCCC----CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCC
Q 038990 388 GKATEYGAKDLEGK----HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRG 457 (505)
Q Consensus 388 a~v~v~~a~~L~~~----~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~ 457 (505)
..|+|++|+||+.. +.+||||++++.+ .+++|++++++.||+|||+|.|.+....+. ..|.++|||++.
T Consensus 17 L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~- 95 (125)
T cd08393 17 LHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDS- 95 (125)
T ss_pred EEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCC-
Confidence 48999999999753 5799999999953 236999999999999999999998754333 489999999984
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEeC
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHLI 489 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 489 (505)
++++++||++.++|.++..+.....||+|.
T Consensus 96 --~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 96 --LGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred --CCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 678999999999999997776678999984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=126.15 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=94.4
Q ss_pred EEEEEeeecCCCCCCCCCCEEEEEEcCeEE-EeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCcc-CCCCCc
Q 038990 388 GKATEYGAKDLEGKHHNNPYAVVICRGEQK-KTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLR-LRSKES 465 (505)
Q Consensus 388 a~v~v~~a~~L~~~~~~dpyv~v~~~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~-~~~d~~ 465 (505)
..|.|.+|++|+.+ .+|||++.+++... +|+++.++.||.|+|.|+|.+..+ ...+.|.|+..+.... ..++.+
T Consensus 13 L~v~V~EAk~Lp~~--~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~--~~~l~v~v~k~~~~~~~~~~~~~ 88 (146)
T cd04013 13 LKLWIIEAKGLPPK--KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP--VSVITVNLYRESDKKKKKDKSQL 88 (146)
T ss_pred EEEEEEEccCCCCc--CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc--ccEEEEEEEEccCccccccCCcE
Confidence 48999999999885 48999999999885 999999999999999999976543 3579999976543100 125789
Q ss_pred cEEEEEeccccccCCEEeEEEEeCCCC-------------CceEEEEEEEEeC
Q 038990 466 LGYVDINLHDVLHNGRLKEKYHLINSK-------------NGAVQVEIKWKAI 505 (505)
Q Consensus 466 lG~~~i~L~~l~~~~~~~~~~~L~~~~-------------~G~i~l~~~~~~~ 505 (505)
||.+.|+++++..+...++||+|.+.. .++|+++++|.++
T Consensus 89 IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 89 IGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred EEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 999999999999888889999997532 2799999999874
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-14 Score=123.91 Aligned_cols=110 Identities=19% Similarity=0.299 Sum_probs=92.2
Q ss_pred eEEEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCC
Q 038990 387 VGKATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSK 463 (505)
Q Consensus 387 ~a~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d 463 (505)
+.+|+|++|++|... +.+||||+++++++.++|++++++.||+|||.|.|.+.+. ...|.|+|||++. . +|
T Consensus 4 ~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~i~V~d~~~---~-~d 77 (126)
T cd04046 4 VTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP--RSPIKIQVWNSNL---L-CD 77 (126)
T ss_pred EEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC--CCEEEEEEEECCC---C-CC
Confidence 358999999999763 5899999999999999999999999999999999988764 4689999999873 3 58
Q ss_pred CccEEEEEeccccccCCEEeEEEEeCC-------CCCceEEEEEEEEe
Q 038990 464 ESLGYVDINLHDVLHNGRLKEKYHLIN-------SKNGAVQVEIKWKA 504 (505)
Q Consensus 464 ~~lG~~~i~L~~l~~~~~~~~~~~L~~-------~~~G~i~l~~~~~~ 504 (505)
++||++.++++++.. ...++|+|.. ...|+|.+++...+
T Consensus 78 ~~lG~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 78 EFLGQATLSADPNDS--QTLRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CceEEEEEecccCCC--cCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 999999999987643 3468899942 23799999998764
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.5e-16 Score=133.78 Aligned_cols=111 Identities=27% Similarity=0.296 Sum_probs=90.5
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeec--CCCCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKD--PETQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~--~~~~~L~v~v 332 (505)
+....+.|.|+|++|+||+..+ .+.+||||++++.+. ...+++|++++++.||.|||+|.|.+.. .....|.++|
T Consensus 10 y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V 88 (137)
T cd08409 10 YNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSV 88 (137)
T ss_pred ECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEE
Confidence 4456789999999999999988 788999999998653 2345689999999999999999999853 2356899999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCCeeEEEEeccc
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
||++..+++++||++.++......++..+.|.++.+
T Consensus 89 ~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 89 MQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred EeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 999999999999999999766655555555555543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.6e-15 Score=127.61 Aligned_cols=100 Identities=24% Similarity=0.283 Sum_probs=83.1
Q ss_pred eEEEEEeeecCCCCC----CCCCCEEEEEEcCe-----EEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccC
Q 038990 387 VGKATEYGAKDLEGK----HHNNPYAVVICRGE-----QKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRR 456 (505)
Q Consensus 387 ~a~v~v~~a~~L~~~----~~~dpyv~v~~~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~ 456 (505)
...|+|++|+||+.. +.+||||++++... ++||++++++.||+|||+|.|.+....+. ..|.++||+.+.
T Consensus 16 ~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~ 95 (128)
T cd08392 16 CLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRT 95 (128)
T ss_pred EEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCC
Confidence 348999999999652 67899999999632 55999999999999999999999765443 489999999984
Q ss_pred CccCCCCCccEEEEEeccccccC---CEEeEEEEeC
Q 038990 457 GLRLRSKESLGYVDINLHDVLHN---GRLKEKYHLI 489 (505)
Q Consensus 457 ~~~~~~d~~lG~~~i~L~~l~~~---~~~~~~~~L~ 489 (505)
++++++||++.|+|+++.-. ....+||+|.
T Consensus 96 ---~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 96 ---LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred ---CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 67899999999999998553 2668999984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.7e-15 Score=122.10 Aligned_cols=90 Identities=13% Similarity=0.228 Sum_probs=78.6
Q ss_pred EEEEEeeecCCCCC-------CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccC
Q 038990 388 GKATEYGAKDLEGK-------HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRL 460 (505)
Q Consensus 388 a~v~v~~a~~L~~~-------~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~ 460 (505)
..|+|.+|++|+.. +.+||||++++++..+||++++++.||+|||.|.|.+.+...+..|.|+|||++. .
T Consensus 3 l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~---~ 79 (108)
T cd04039 3 VFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK---F 79 (108)
T ss_pred EEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC---C
Confidence 37899999999753 2489999999988888999999999999999999999765444589999999984 6
Q ss_pred CCCCccEEEEEeccccccCC
Q 038990 461 RSKESLGYVDINLHDVLHNG 480 (505)
Q Consensus 461 ~~d~~lG~~~i~L~~l~~~~ 480 (505)
+++++||++.++|+++..+.
T Consensus 80 ~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 80 SFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCcceEEEEEEHHHHHhhC
Confidence 78999999999999998754
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.2e-15 Score=172.49 Aligned_cols=113 Identities=27% Similarity=0.545 Sum_probs=102.9
Q ss_pred EEEEEeeecCCCCC-CCCCCEEEEEEcCe-EEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCc
Q 038990 388 GKATEYGAKDLEGK-HHNNPYAVVICRGE-QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKES 465 (505)
Q Consensus 388 a~v~v~~a~~L~~~-~~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~ 465 (505)
..|+|++|+||.+. +.+||||++.+++. ++||++++++.||+|||.|+|.+.+++.+++++|+|||++. + +++.
T Consensus 1982 L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~---f-~kd~ 2057 (2102)
T PLN03200 1982 LTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT---F-GKSS 2057 (2102)
T ss_pred eEEEEeeccccccccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc---c-CCCC
Confidence 38999999999965 79999999999955 77999999999999999999999998777789999999984 5 5669
Q ss_pred cEEEEEeccccccCCEEeEEEEeCC--CCCce---EEEEEEEEe
Q 038990 466 LGYVDINLHDVLHNGRLKEKYHLIN--SKNGA---VQVEIKWKA 504 (505)
Q Consensus 466 lG~~~i~L~~l~~~~~~~~~~~L~~--~~~G~---i~l~~~~~~ 504 (505)
+|+++|+|.++..++.+.+||+|.+ ++.|+ |+++++|++
T Consensus 2058 ~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2058 LGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEecC
Confidence 9999999999999999999999997 56899 999999986
|
|
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.6e-15 Score=127.72 Aligned_cols=104 Identities=23% Similarity=0.391 Sum_probs=88.2
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeC-CCCCCeEceeEEEEeecCC----CCEEEEEEEEcCC
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKM-KTLNPEWNEDFKLTVKDPE----TQVLQLHVYDWEK 337 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~-~t~nP~wne~f~~~v~~~~----~~~L~v~v~d~d~ 337 (505)
.|+|+|++|++|+..+..+.+||||++++++.. .++|++.. ++.||.|||+|.|.+.+.. ...|.++|||++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~--~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSH--KQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCc--ccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 479999999999999888999999999998722 25788864 6899999999999997653 6789999999998
Q ss_pred CCCCcccEEEEEECccCCCCCe-----eEEEEeccc
Q 038990 338 VGTHDKLGMQVVPLRSLTPNET-----KELTLDLVK 368 (505)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~~~-----~~~~l~l~~ 368 (505)
.++|++||++.+++.++..+.. +..|++|.+
T Consensus 79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~ 114 (125)
T cd04051 79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRR 114 (125)
T ss_pred CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeEC
Confidence 8899999999999999987654 356777764
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.1e-16 Score=150.91 Aligned_cols=106 Identities=31% Similarity=0.506 Sum_probs=90.2
Q ss_pred CeEEEEEEEeeccCccccCCCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeecC-CCCEEEEEEEEcC
Q 038990 260 PVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKDP-ETQVLQLHVYDWE 336 (505)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~~-~~~~L~v~v~d~d 336 (505)
....|+|+|.+|+||.++|.+|.|||||++.+-++. ..+++|++++.++||+|||+|.|.+... ....|.++|||||
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD 257 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD 257 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence 557899999999999999999999999999996543 3357899999999999999999999643 3578999999999
Q ss_pred CCCCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 337 KVGTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
+.+++||+|..++.+++|... +..-|+.|
T Consensus 258 rTsRNDFMGslSFgisEl~K~-p~~GWyKl 286 (683)
T KOG0696|consen 258 RTSRNDFMGSLSFGISELQKA-PVDGWYKL 286 (683)
T ss_pred ccccccccceecccHHHHhhc-chhhHHHH
Confidence 999999999999999999866 23334443
|
|
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.4e-15 Score=126.00 Aligned_cols=98 Identities=20% Similarity=0.247 Sum_probs=82.3
Q ss_pred EEEEEeeecCCCC---CCCCCCEEEEEEcC------eEEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCC
Q 038990 388 GKATEYGAKDLEG---KHHNNPYAVVICRG------EQKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRG 457 (505)
Q Consensus 388 a~v~v~~a~~L~~---~~~~dpyv~v~~~~------~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~ 457 (505)
..|+|++|+||.. .+.+||||++++.. .+++|++++++.||+|||+|+|.+....+. ..|.++||+++.
T Consensus 16 L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~- 94 (124)
T cd08680 16 LVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGP- 94 (124)
T ss_pred EEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCC-
Confidence 5899999999975 36899999999842 256999999999999999999999765443 489999999874
Q ss_pred ccCCCCCccEEEEEeccccccC-CEEeEEEEe
Q 038990 458 LRLRSKESLGYVDINLHDVLHN-GRLKEKYHL 488 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~-~~~~~~~~L 488 (505)
.+++++||.+.++|+++... +...+||+|
T Consensus 95 --~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 95 --DQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred --CCceeEEEEEEEEhhhccCCCccccccccC
Confidence 77899999999999999554 456889976
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=125.08 Aligned_cols=96 Identities=31% Similarity=0.494 Sum_probs=85.4
Q ss_pred EeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEEEEcCCCCCCcccE
Q 038990 268 VIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHVYDWEKVGTHDKLG 345 (505)
Q Consensus 268 v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v~d~d~~~~d~~lG 345 (505)
|++|++|+. ..|.+||||++++++.+ ++|++++++.||.|||+|.|.+... ..+.|.++|||++..++|++||
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~---~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVK---KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG 76 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEe---eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence 689999998 57899999999998754 5899999999999999999999754 4688999999999989999999
Q ss_pred EEEEECccCCCCCeeEEEEeccc
Q 038990 346 MQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 346 ~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
++.++++++..+.....|++|..
T Consensus 77 ~~~~~l~~l~~~~~~~~~~~L~~ 99 (127)
T cd08373 77 SATVSLQDLVSEGLLEVTEPLLD 99 (127)
T ss_pred EEEEEhhHcccCCceEEEEeCcC
Confidence 99999999998888888888853
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.2e-15 Score=127.48 Aligned_cols=88 Identities=24% Similarity=0.417 Sum_probs=79.8
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCC
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKE 464 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~ 464 (505)
.+|.|.+|.+|..+ +.+||||.+.+++++.||+++++++||+|||.|+|.+.++ +..+.++|||++. +++|+
T Consensus 8 L~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~--~~~lkv~VyD~D~---fs~dD 82 (168)
T KOG1030|consen 8 LRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP--NTPLKVTVYDKDT---FSSDD 82 (168)
T ss_pred EEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC--CceEEEEEEeCCC---CCccc
Confidence 47899999999653 5899999999999999999999999999999999999987 4689999999995 89999
Q ss_pred ccEEEEEeccccccCC
Q 038990 465 SLGYVDINLHDVLHNG 480 (505)
Q Consensus 465 ~lG~~~i~L~~l~~~~ 480 (505)
++|.++|+|..++...
T Consensus 83 ~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 83 FMGEATIPLKPLLEAQ 98 (168)
T ss_pred ccceeeeccHHHHHHh
Confidence 9999999998887643
|
|
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.9e-15 Score=121.27 Aligned_cols=82 Identities=27% Similarity=0.444 Sum_probs=69.9
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEc------
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDW------ 335 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~------ 335 (505)
|.|+|++|+||+ +.+||||++.+++.. ....+|+++++|+||+|||+|+|.+. ..+.|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEccccccc
Confidence 679999999995 568999999997632 34579999999999999999999995 367999999998
Q ss_pred -CCCCCCcccEEEEEECc
Q 038990 336 -EKVGTHDKLGMQVVPLR 352 (505)
Q Consensus 336 -d~~~~d~~lG~~~i~l~ 352 (505)
|..++|+.+|++.+.|+
T Consensus 74 ~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred ccccCcccEEEEEEEEEC
Confidence 45678999988888775
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-14 Score=123.18 Aligned_cols=106 Identities=27% Similarity=0.442 Sum_probs=87.7
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEc-CeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCC--
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICR-GEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRS-- 462 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~-~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~-- 462 (505)
+|+|++|++|+.. +.+||||+++++ ...++|++++++.||.|||.|+|.+.. ++.|.++|||++. ++.
T Consensus 3 ~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~---~~~l~i~V~d~~~---~~~~~ 76 (123)
T cd08382 3 RLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP---SSIITIQVFDQKK---FKKKD 76 (123)
T ss_pred EEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC---CCEEEEEEEECCC---CCCCC
Confidence 6899999999764 579999999997 456799999999999999999999965 4689999999985 443
Q ss_pred CCccEEEEEeccccccCC-EEeEEEEeCCCC-------CceEEEEE
Q 038990 463 KESLGYVDINLHDVLHNG-RLKEKYHLINSK-------NGAVQVEI 500 (505)
Q Consensus 463 d~~lG~~~i~L~~l~~~~-~~~~~~~L~~~~-------~G~i~l~~ 500 (505)
+++||++.++++++.... ....||+|...+ .|+|.+++
T Consensus 77 d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 77 QGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 689999999999998754 347899995432 68888775
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.59 E-value=8e-15 Score=126.64 Aligned_cols=107 Identities=33% Similarity=0.506 Sum_probs=91.8
Q ss_pred EEEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeecC-CCCEEEEEEEEcCCC
Q 038990 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKDP-ETQVLQLHVYDWEKV 338 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~~-~~~~L~v~v~d~d~~ 338 (505)
+.|+|+|++|++|+..+..+.+||||++.+.+. ....++|++++++.||.|||+|.|.+... ..+.|.++|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 889999999999999888889999999999642 22346899999999999999999998653 356899999999988
Q ss_pred CCCcccEEEEEECccCCCCCeeEEEEecccc
Q 038990 339 GTHDKLGMQVVPLRSLTPNETKELTLDLVKN 369 (505)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~ 369 (505)
+++++||++.++++++... ....|++|...
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 8999999999999999865 66778887654
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.2e-14 Score=121.99 Aligned_cols=109 Identities=17% Similarity=0.235 Sum_probs=90.6
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCe---EEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCC
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGE---QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRS 462 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~---~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~ 462 (505)
+|+|.+|++|+.. +.+||||++++.+. ..+|++++++.||.|||+|.|.+... ....|.|+|||++. .+.
T Consensus 4 ~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~-~~~~L~i~v~d~d~---~~~ 79 (126)
T cd04043 4 TIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAG-EPLWISATVWDRSF---VGK 79 (126)
T ss_pred EEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCC-CCCEEEEEEEECCC---CCC
Confidence 6899999999753 58899999998643 46999999999999999999999775 34689999999984 568
Q ss_pred CCccEEEEEeccccccC---CEEeEEEEeCCCCCceEEEEEEEE
Q 038990 463 KESLGYVDINLHDVLHN---GRLKEKYHLINSKNGAVQVEIKWK 503 (505)
Q Consensus 463 d~~lG~~~i~L~~l~~~---~~~~~~~~L~~~~~G~i~l~~~~~ 503 (505)
+++||++.++|+++... ...+.|++|.. +|+|++++.+.
T Consensus 80 ~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~~ 121 (126)
T cd04043 80 HDLCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSME 121 (126)
T ss_pred CceEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEEe
Confidence 89999999999886542 24578999964 79999988774
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-15 Score=131.32 Aligned_cols=111 Identities=34% Similarity=0.406 Sum_probs=92.0
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeecCC--CCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKDPE--TQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~~~--~~~L~v~v 332 (505)
+....+.|.|+|++|+||+..+..+.+||||++++.+. ....++|++++++.||.|||+|.|.+.... ...|.|+|
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v 88 (134)
T cd00276 9 YLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITV 88 (134)
T ss_pred eeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEE
Confidence 44456899999999999999988889999999998654 233568999999999999999999986543 57899999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCCeeEEEEecccc
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKN 369 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~ 369 (505)
||++..+++++||++.+++++ .+...+.|+++...
T Consensus 89 ~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 89 VDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred EecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 999988899999999999999 44445566666543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-14 Score=121.96 Aligned_cols=95 Identities=29% Similarity=0.531 Sum_probs=79.9
Q ss_pred EeeccCccccCCCCCCCcEEEEEECCe---ecceeeeeeeCCCCCCeEceeEEEEeecCC----CCEEEEEEEEcCCCCC
Q 038990 268 VIRAIRLLKMDIFGASDPYVQLSLSGE---RIPAKKTSVKMKTLNPEWNEDFKLTVKDPE----TQVLQLHVYDWEKVGT 340 (505)
Q Consensus 268 v~~a~~L~~~d~~g~~dpyv~v~l~~~---~~~~~~T~~~~~t~nP~wne~f~~~v~~~~----~~~L~v~v~d~d~~~~ 340 (505)
.++|++|+..|..|.+||||++++.+. ....++|+++++++||.|| +|.|.+.... .+.|.++|||++..++
T Consensus 6 ~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~ 84 (110)
T cd04047 6 QFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGK 84 (110)
T ss_pred EEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCC
Confidence 469999999999999999999998654 2334799999999999999 6888764322 5789999999999999
Q ss_pred CcccEEEEEECccCCCCCeeEEE
Q 038990 341 HDKLGMQVVPLRSLTPNETKELT 363 (505)
Q Consensus 341 d~~lG~~~i~l~~l~~~~~~~~~ 363 (505)
|++||++.++++++..+..+++.
T Consensus 85 d~~iG~~~~~l~~l~~~~~~~~~ 107 (110)
T cd04047 85 HDLIGEFETTLDELLKSSPLEFE 107 (110)
T ss_pred CcEEEEEEEEHHHHhcCCCceEE
Confidence 99999999999999976665543
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-14 Score=123.25 Aligned_cols=104 Identities=27% Similarity=0.407 Sum_probs=83.8
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECCeec----------ceeeeeeeCCCCCCeE-ceeEEEEeecCCCCEEEEE
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERI----------PAKKTSVKMKTLNPEW-NEDFKLTVKDPETQVLQLH 331 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~----------~~~~T~~~~~t~nP~w-ne~f~~~v~~~~~~~L~v~ 331 (505)
+..|++++|+||+ ++..|++||||++++.+... ..++|+++++++||+| ||+|.|.+. .++.|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence 4678999999998 77789999999999965332 2579999999999999 999999984 35789999
Q ss_pred EEEcCCCCC---CcccEEEEEECccCCCCCe---eEEEEecccc
Q 038990 332 VYDWEKVGT---HDKLGMQVVPLRSLTPNET---KELTLDLVKN 369 (505)
Q Consensus 332 v~d~d~~~~---d~~lG~~~i~l~~l~~~~~---~~~~l~l~~~ 369 (505)
|||++..++ +++||++.++++++..+.. ..+++++.+.
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~ 122 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRR 122 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcC
Confidence 999875443 7999999999999986632 4456665543
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=123.98 Aligned_cols=100 Identities=21% Similarity=0.333 Sum_probs=85.1
Q ss_pred eEEEEEeeecCCCCC---CCCCCEEEEEEcC---eEEEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccCCcc
Q 038990 387 VGKATEYGAKDLEGK---HHNNPYAVVICRG---EQKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRRGLR 459 (505)
Q Consensus 387 ~a~v~v~~a~~L~~~---~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~ 459 (505)
...|+|++|++|+.. +.+||||++++.. ..++|++++++.||+|||+|.|.+..... +..|.++|||++.
T Consensus 17 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~--- 93 (124)
T cd08387 17 ILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ--- 93 (124)
T ss_pred EEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC---
Confidence 358999999999763 5899999999942 34699999999999999999999875432 3489999999974
Q ss_pred CCCCCccEEEEEeccccccCCEEeEEEEeC
Q 038990 460 LRSKESLGYVDINLHDVLHNGRLKEKYHLI 489 (505)
Q Consensus 460 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 489 (505)
++++++||++.++|+++..+...+.||+|+
T Consensus 94 ~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 94 FSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCCceeEEEEEecccccCCCCcceEEECc
Confidence 678999999999999998877889999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.4e-14 Score=121.83 Aligned_cols=108 Identities=26% Similarity=0.457 Sum_probs=88.1
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCc-------
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGL------- 458 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~------- 458 (505)
+|+|++|++|+.. +.+||||++++++..++|++++++.||+|||.|.|.+..+ .+.|.|+|||++...
T Consensus 4 ~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~--~~~l~i~v~d~d~~~~~~~~~~ 81 (127)
T cd04027 4 SITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS--SDRIKVRVWDEDDDIKSRLKQK 81 (127)
T ss_pred EEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC--CCEEEEEEEECCCCccccccee
Confidence 6889999999763 5789999999988888999999999999999999998654 358999999987410
Q ss_pred -cCCCCCccEEEEEeccccccCCEEeEEEEeCCC-----CCceEEEEE
Q 038990 459 -RLRSKESLGYVDINLHDVLHNGRLKEKYHLINS-----KNGAVQVEI 500 (505)
Q Consensus 459 -~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~ 500 (505)
..+.+++||++.+++.++.. ..+.||.|... .+|+|.+++
T Consensus 82 ~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 82 FTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred ccccCCCcceEEEEEhHHccC--CCCeEEECccCCCCCcEeEEEEEEC
Confidence 01468999999999998754 34799999853 278888864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.8e-14 Score=119.80 Aligned_cols=108 Identities=24% Similarity=0.374 Sum_probs=85.1
Q ss_pred EEEEeeecCCCCCCCCCCEEEEEEcCeE-EEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCCccCCCCCcc
Q 038990 389 KATEYGAKDLEGKHHNNPYAVVICRGEQ-KKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRGLRLRSKESL 466 (505)
Q Consensus 389 ~v~v~~a~~L~~~~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~d~~l 466 (505)
+|+|++|++|+..+.+||||++++++.. .+|+++++ .||.|||+|.|.+...... ..+.+.+++++. ...+..+
T Consensus 3 ~v~vi~a~~l~~~~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~---~~~~~~~ 78 (117)
T cd08383 3 RLRILEAKNLPSKGTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRS---KDRDIVI 78 (117)
T ss_pred EEEEEEecCCCcCCCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEeccc---CCCeeEE
Confidence 6899999999887899999999998854 69999999 9999999999999764322 367888888763 4455667
Q ss_pred EEEEEeccccccCCEEeEEEEeCCCC-----CceEEEEEEE
Q 038990 467 GYVDINLHDVLHNGRLKEKYHLINSK-----NGAVQVEIKW 502 (505)
Q Consensus 467 G~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~~ 502 (505)
|.+.+ ..+..+...++||+|.... .|+|+++++|
T Consensus 79 g~v~l--~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 79 GKVAL--SKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEe--cCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 76555 4444466678999997532 7999999986
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-14 Score=123.65 Aligned_cols=99 Identities=23% Similarity=0.269 Sum_probs=84.4
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC---eEEEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccCCccC
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG---EQKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRRGLRL 460 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~ 460 (505)
.+|+|++|++|+.. +.+||||++++.+ ..++|++++++.||+|||+|.|.+..... +..|.++|||++. +
T Consensus 18 L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~---~ 94 (124)
T cd08385 18 LTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR---F 94 (124)
T ss_pred EEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC---C
Confidence 48999999999763 5789999999854 34599999999999999999999875322 3489999999984 6
Q ss_pred CCCCccEEEEEeccccccCCEEeEEEEeC
Q 038990 461 RSKESLGYVDINLHDVLHNGRLKEKYHLI 489 (505)
Q Consensus 461 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 489 (505)
+++++||++.++|+++..+...++||+|.
T Consensus 95 ~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 95 SKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 78899999999999998777789999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-14 Score=123.42 Aligned_cols=102 Identities=24% Similarity=0.317 Sum_probs=84.3
Q ss_pred eEEEEEeeecCCCCC---CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccCC
Q 038990 387 VGKATEYGAKDLEGK---HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRRG 457 (505)
Q Consensus 387 ~a~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~ 457 (505)
..+|+|++|+||+.. +.+||||++++.+ ..++|++++++.||+|||+|.|.+..... ...|.++||+++..
T Consensus 17 ~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~ 96 (127)
T cd04030 17 KLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSF 96 (127)
T ss_pred EEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcc
Confidence 348999999999763 5899999999963 45799999999999999999999865433 24899999998741
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEeC
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHLI 489 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 489 (505)
..+.+++||++.++|+++..+....+||+|.
T Consensus 97 -~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 97 -LSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred -cCCCCceEEEEEEecccccccCCccceEECc
Confidence 0157899999999999998777778999984
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.55 E-value=5e-15 Score=127.83 Aligned_cols=110 Identities=19% Similarity=0.308 Sum_probs=87.1
Q ss_pred EEEEEeeecCCCCC-----CCCCCEEEEEEcCe-----EEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccC
Q 038990 388 GKATEYGAKDLEGK-----HHNNPYAVVICRGE-----QKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRR 456 (505)
Q Consensus 388 a~v~v~~a~~L~~~-----~~~dpyv~v~~~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~ 456 (505)
..|+|++|+||... +.+||||++++... ++||++++++.||+|||.|.|.++...+. ..|.|+|||++.
T Consensus 17 L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~ 96 (138)
T cd08407 17 LLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDS 96 (138)
T ss_pred EEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCC
Confidence 48999999999753 34899999998652 35999999999999999999999865443 379999999984
Q ss_pred CccCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEEEeC
Q 038990 457 GLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWKAI 505 (505)
Q Consensus 457 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~~~~ 505 (505)
++++++||++.+++.. .+....+|.++..+++-.|. +|+++
T Consensus 97 ---~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~~~va---~WH~L 137 (138)
T cd08407 97 ---PGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPRRQIA---MWHQL 137 (138)
T ss_pred ---CcCcceeceEEecCcC--CCcHHHHHHHHHhCCCCchh---EEEEC
Confidence 7889999999999975 34455788888766554444 56543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.9e-14 Score=118.54 Aligned_cols=107 Identities=23% Similarity=0.398 Sum_probs=90.7
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcCe-EEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCC
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRGE-QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSK 463 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d 463 (505)
.+|+|++|++|+.. +.+||||++++++. .++|++++++.||+|||.|.|.+... ++.|.|+|||++. .+.+
T Consensus 3 L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~--~~~L~v~v~d~~~---~~~d 77 (120)
T cd04045 3 LRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP--NQKITLEVMDYEK---VGKD 77 (120)
T ss_pred EEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC--CCEEEEEEEECCC---CCCC
Confidence 36899999999763 58999999999774 46999999999999999999998764 3689999999984 6788
Q ss_pred CccEEEEEeccccccCCEEeEEEEeCCCCCceEEEEE
Q 038990 464 ESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEI 500 (505)
Q Consensus 464 ~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~ 500 (505)
++||++.+++.++..+ ..+.||.|.+++++++.--+
T Consensus 78 ~~IG~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~ 113 (120)
T cd04045 78 RSLGSVEINVSDLIKK-NEDGKYVEYDDEEERLKRLL 113 (120)
T ss_pred CeeeEEEEeHHHhhCC-CCCceEEecCCCcceeeEee
Confidence 9999999999999987 45899999998877665333
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.3e-14 Score=120.23 Aligned_cols=103 Identities=32% Similarity=0.493 Sum_probs=84.8
Q ss_pred EEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCC
Q 038990 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTH 341 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d 341 (505)
..|.|+|++|+ |...+..+.+||||++++++. ..++|++++++.||.|||+|.|.+.. .+.|.++|||++..++|
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~--~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~ 76 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ--PPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKAD 76 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc--ccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCC
Confidence 46899999998 555555788999999999865 23689999999999999999999853 57899999999999999
Q ss_pred cccEEEEEECccCCCCCe-----eEEEEecccc
Q 038990 342 DKLGMQVVPLRSLTPNET-----KELTLDLVKN 369 (505)
Q Consensus 342 ~~lG~~~i~l~~l~~~~~-----~~~~l~l~~~ 369 (505)
++||++.++++++..... ...|+++.+.
T Consensus 77 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~ 109 (125)
T cd04021 77 VLLGEASLDLSDILKNHNGKLENVKLTLNLSSE 109 (125)
T ss_pred cEEEEEEEEHHHhHhhcCCCccceEEEEEEEcc
Confidence 999999999999876433 2346766543
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.5e-14 Score=121.59 Aligned_cols=107 Identities=26% Similarity=0.391 Sum_probs=89.2
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcC-eEEEeeccc-CCCCCccCceEEEEeeCCCC---CCeEEEEEEEccCCccC
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRG-EQKKTKMIK-KCRDPIWNEEFQFDFEEAPL---KEKIHIEVKSKRRGLRL 460 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~-~~~kT~v~~-~t~nP~wne~f~f~v~~~~~---~~~l~i~V~d~~~~~~~ 460 (505)
+|+|++|++|+.. +.+||||++++++ ..++|++++ ++.||.|||.|.|.+....+ ...|.++|||++. +
T Consensus 3 ~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~---~ 79 (125)
T cd04051 3 EITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP---S 79 (125)
T ss_pred EEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC---C
Confidence 6899999999863 5899999999988 778999876 58999999999999977521 4689999999974 5
Q ss_pred CCCCccEEEEEeccccccCCE-----EeEEEEeCCC---CCceEEE
Q 038990 461 RSKESLGYVDINLHDVLHNGR-----LKEKYHLINS---KNGAVQV 498 (505)
Q Consensus 461 ~~d~~lG~~~i~L~~l~~~~~-----~~~~~~L~~~---~~G~i~l 498 (505)
+.+++||++.++|.++..+.. ...||+|.+. .+|.|++
T Consensus 80 ~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 80 LGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 789999999999999998653 3689999854 3687764
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=3e-14 Score=121.99 Aligned_cols=98 Identities=28% Similarity=0.365 Sum_probs=79.6
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCC-C-CCCeEEEEEEEccCC
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEA-P-LKEKIHIEVKSKRRG 457 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~-~-~~~~l~i~V~d~~~~ 457 (505)
..|+|++|++|+.. +.+||||++++.+ ..++|++++++.||+|||+|.|.+... . .+..|.|+|||++.
T Consensus 18 L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~- 96 (125)
T cd04031 18 LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDR- 96 (125)
T ss_pred EEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCC-
Confidence 48999999999763 5799999999965 356999999999999999999986432 1 23589999999984
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEeC
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHLI 489 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 489 (505)
.+.+++||++.++|++... ....+||+|+
T Consensus 97 --~~~~~~iG~~~i~l~~~~~-~~~~~W~~L~ 125 (125)
T cd04031 97 --DGENDFLGEVVIDLADALL-DDEPHWYPLQ 125 (125)
T ss_pred --CCCCcEeeEEEEecccccc-cCCcceEECc
Confidence 6788999999999998333 3346899984
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.1e-15 Score=126.94 Aligned_cols=110 Identities=20% Similarity=0.270 Sum_probs=87.0
Q ss_pred EEEEEeeecCCCC---CCCCCCEEEEEEcCe-----EEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEG---KHHNNPYAVVICRGE-----QKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~---~~~~dpyv~v~~~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~ 458 (505)
..|+|++|+||+. .+.+||||++++... ++||++++++.||+|||+|.|.+....+. ..|.|+|+|++.
T Consensus 17 L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~-- 94 (136)
T cd08406 17 LTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTE-- 94 (136)
T ss_pred EEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCC--
Confidence 4899999999975 357999999999532 45899999999999999999999765443 479999999984
Q ss_pred cCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEEEeC
Q 038990 459 RLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWKAI 505 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~~~~ 505 (505)
.+++++||++.++... .+....+|..+..+.+-.|. +|+.+
T Consensus 95 -~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~~~~~~v~---~WH~l 135 (136)
T cd08406 95 -DGKTPNVGHVIIGPAA--SGMGLSHWNQMLASLRKPVA---MWHPL 135 (136)
T ss_pred -CCCCCeeEEEEECCCC--CChhHHHHHHHHHCCCCeee---Eeeec
Confidence 7789999999998764 34455789888876554443 66653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-14 Score=123.02 Aligned_cols=111 Identities=20% Similarity=0.251 Sum_probs=87.3
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC-----eEEEeecccCCC-CCccCceEEEEeeCCCCCCeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG-----EQKKTKMIKKCR-DPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~-nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~ 458 (505)
.+|+|++|+||+.. +.+||||++++.. +++||+++++|. ||+|||+|.|.+.....+-.+.|+|||++.
T Consensus 16 LtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~-- 93 (135)
T cd08692 16 IQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSS-- 93 (135)
T ss_pred EEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCC--
Confidence 48999999999874 3569999999843 346999999994 699999999999875433378899999874
Q ss_pred cCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEEEeC
Q 038990 459 RLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWKAI 505 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~~~~ 505 (505)
.+++++||++.++.+.. .....++|.++..+++-.|. +|+++
T Consensus 94 -~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~~ia---~WH~L 135 (135)
T cd08692 94 -VRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEKVVT---KWHSL 135 (135)
T ss_pred -CcCCceEEEEEECCccC-CchhhhhHHHHHhCCCCeee---EeecC
Confidence 67899999999999763 23345789888877666555 77653
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-13 Score=120.13 Aligned_cols=87 Identities=25% Similarity=0.477 Sum_probs=77.9
Q ss_pred EEEEEeeecCCCCC--CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCc
Q 038990 388 GKATEYGAKDLEGK--HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKES 465 (505)
Q Consensus 388 a~v~v~~a~~L~~~--~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~ 465 (505)
.+|+|++|++|+.. +.+||||+++++++.++|++++++.||+|||.|.|.+.++ ...+.++|||++. ++.|++
T Consensus 4 L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~--~~~l~~~V~D~d~---~~~dd~ 78 (145)
T cd04038 4 LKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP--MAPLKLEVFDKDT---FSKDDS 78 (145)
T ss_pred EEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC--CCEEEEEEEECCC---CCCCCE
Confidence 37899999999753 5899999999999999999999999999999999999876 4689999999985 788999
Q ss_pred cEEEEEeccccccC
Q 038990 466 LGYVDINLHDVLHN 479 (505)
Q Consensus 466 lG~~~i~L~~l~~~ 479 (505)
||++.+++.++...
T Consensus 79 iG~a~i~l~~l~~~ 92 (145)
T cd04038 79 MGEAEIDLEPLVEA 92 (145)
T ss_pred EEEEEEEHHHhhhh
Confidence 99999999988764
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-13 Score=117.79 Aligned_cols=109 Identities=21% Similarity=0.366 Sum_probs=86.2
Q ss_pred EEEEeeecCCCCC--CCCCCEEEEEEcC-------------eEEEeecccCCCCCcc-CceEEEEeeCCCCCCeEEEEEE
Q 038990 389 KATEYGAKDLEGK--HHNNPYAVVICRG-------------EQKKTKMIKKCRDPIW-NEEFQFDFEEAPLKEKIHIEVK 452 (505)
Q Consensus 389 ~v~v~~a~~L~~~--~~~dpyv~v~~~~-------------~~~kT~v~~~t~nP~w-ne~f~f~v~~~~~~~~l~i~V~ 452 (505)
+|++++|+||+.. +.+||||++++.+ +.++|++++++.||+| ||+|.|.+.. ++.|.++||
T Consensus 4 ~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~---~~~L~v~V~ 80 (137)
T cd08691 4 SLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP---TDVLEIEVK 80 (137)
T ss_pred EEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC---CCEEEEEEE
Confidence 5788999999742 6899999999953 2579999999999999 9999999953 368999999
Q ss_pred EccCCccCCCCCccEEEEEeccccccCC---EEeEEEEeCCCC-----CceEEEEE
Q 038990 453 SKRRGLRLRSKESLGYVDINLHDVLHNG---RLKEKYHLINSK-----NGAVQVEI 500 (505)
Q Consensus 453 d~~~~~~~~~d~~lG~~~i~L~~l~~~~---~~~~~~~L~~~~-----~G~i~l~~ 500 (505)
|++.......+++||++.++++++.... ....||+|.... +|+|.+.+
T Consensus 81 D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 81 DKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred ecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 9763100113799999999999998753 457899997543 68887765
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.6e-14 Score=120.73 Aligned_cols=101 Identities=25% Similarity=0.368 Sum_probs=86.7
Q ss_pred EEEEeeecCCCCC--CCCCCEEEEEEc----CeEEEeecccCCCCCccCceEEEEeeCCC--------------CCCeEE
Q 038990 389 KATEYGAKDLEGK--HHNNPYAVVICR----GEQKKTKMIKKCRDPIWNEEFQFDFEEAP--------------LKEKIH 448 (505)
Q Consensus 389 ~v~v~~a~~L~~~--~~~dpyv~v~~~----~~~~kT~v~~~t~nP~wne~f~f~v~~~~--------------~~~~l~ 448 (505)
+|.|++|++|+.. +.+||||+++++ ...++|++++++.||.|||+|.|.+.... ....+.
T Consensus 2 ~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (137)
T cd08675 2 SVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELR 81 (137)
T ss_pred EEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEEE
Confidence 5889999999754 689999999998 56679999999999999999999987642 234899
Q ss_pred EEEEEccCCccCCCCCccEEEEEeccccccCCEEeEEEEeCCCC
Q 038990 449 IEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSK 492 (505)
Q Consensus 449 i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~ 492 (505)
|+|||++. .+.+++||++.+++.++........||+|...+
T Consensus 82 i~V~d~~~---~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 82 VELWHASM---VSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEcCCc---CcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 99999984 568999999999999998777778999998653
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.1e-15 Score=142.86 Aligned_cols=106 Identities=25% Similarity=0.419 Sum_probs=92.7
Q ss_pred ceEEEEEeeecCCCC---CCCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCC
Q 038990 386 EVGKATEYGAKDLEG---KHHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRG 457 (505)
Q Consensus 386 ~~a~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~ 457 (505)
+..+|+|.+|+||-. +|.+||||++.+-. .++||++++.++||+|||+|+|.+...+.++.|.|+|||++.
T Consensus 180 ~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr- 258 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR- 258 (683)
T ss_pred ceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc-
Confidence 456899999999954 57999999999844 346999999999999999999999887777899999999994
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCce
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGA 495 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~ 495 (505)
.++++++|+.++.+++|+... .+.||.|.+...|+
T Consensus 259 --TsRNDFMGslSFgisEl~K~p-~~GWyKlLsqeEGE 293 (683)
T KOG0696|consen 259 --TSRNDFMGSLSFGISELQKAP-VDGWYKLLSQEEGE 293 (683)
T ss_pred --cccccccceecccHHHHhhcc-hhhHHHHhhhhcCc
Confidence 789999999999999998764 48999999887765
|
|
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.4e-14 Score=119.58 Aligned_cols=98 Identities=23% Similarity=0.368 Sum_probs=82.6
Q ss_pred EEEEEeeecCCCC----CCCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccCC
Q 038990 388 GKATEYGAKDLEG----KHHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRRG 457 (505)
Q Consensus 388 a~v~v~~a~~L~~----~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~ 457 (505)
..|+|.+|+||+. .+.+||||++++.+ ..++|++++++.||+|||+|.|.+..... ...|.|+|||++.
T Consensus 16 L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~- 94 (123)
T cd08521 16 LEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDR- 94 (123)
T ss_pred EEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCC-
Confidence 4899999999974 35899999999843 34699999999999999999999875432 3489999999884
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEe
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHL 488 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 488 (505)
.+++++||++.++|+++..+...++||+|
T Consensus 95 --~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 95 --FGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred --CcCCceeeEEEEecccccccCCCccEEEC
Confidence 67889999999999999777777899987
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-14 Score=125.12 Aligned_cols=112 Identities=20% Similarity=0.316 Sum_probs=90.5
Q ss_pred EEEEEeeecCCCCC--CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCCcc
Q 038990 388 GKATEYGAKDLEGK--HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRGLR 459 (505)
Q Consensus 388 a~v~v~~a~~L~~~--~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~ 459 (505)
..|+|++|+||+.. +.+||||++++.+ .+++|++++++.||+|||+|.|.+...++. ..|.|+|++++.
T Consensus 17 L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~--- 93 (137)
T cd08409 17 LTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGG--- 93 (137)
T ss_pred EEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCC---
Confidence 48999999999753 5799999999864 245999999999999999999999755444 489999999984
Q ss_pred CCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEEEeC
Q 038990 460 LRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWKAI 505 (505)
Q Consensus 460 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~~~~ 505 (505)
.+++++||++.++......+....+|+++..+++..|. +|+.|
T Consensus 94 ~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~i~---~WH~l 136 (137)
T cd08409 94 VRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKELIK---RWHAL 136 (137)
T ss_pred CCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCcee---EEEeC
Confidence 67889999999997665556667889999877665444 77654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.6e-14 Score=120.51 Aligned_cols=105 Identities=27% Similarity=0.440 Sum_probs=89.7
Q ss_pred EEEEEeeecCCCC---CCCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCcc
Q 038990 388 GKATEYGAKDLEG---KHHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLR 459 (505)
Q Consensus 388 a~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~ 459 (505)
.+|+|++|++|+. .+.+||||++++.+ ..++|++++++.||.|||+|.|.+........|.++|||++.
T Consensus 15 l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~--- 91 (131)
T cd04026 15 LTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR--- 91 (131)
T ss_pred EEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC---
Confidence 4799999999975 35799999999963 457999999999999999999998765445689999999874
Q ss_pred CCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceE
Q 038990 460 LRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAV 496 (505)
Q Consensus 460 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i 496 (505)
.+.+++||++.++|+++... ....||+|.+.+.|+.
T Consensus 92 ~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~ 127 (131)
T cd04026 92 TTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEY 127 (131)
T ss_pred CCCcceeEEEEEeHHHhCcC-ccCceEECcCcccccc
Confidence 67889999999999999865 5678999999888864
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.4e-14 Score=116.80 Aligned_cols=97 Identities=20% Similarity=0.320 Sum_probs=80.4
Q ss_pred EEEEEeeecCCCC---C-CCCCCEEEEEEcC---eEEEeecccCCCCCccCceEEEEeeCCC--CCCeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEG---K-HHNNPYAVVICRG---EQKKTKMIKKCRDPIWNEEFQFDFEEAP--LKEKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~---~-~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~l~i~V~d~~~~~ 458 (505)
.+|+|++|++|+. . +.+||||++++.+ ..++|++++++.||+|||.|.|.+.... ....|.++|||++.
T Consensus 3 L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~-- 80 (111)
T cd04041 3 LVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR-- 80 (111)
T ss_pred EEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC--
Confidence 3789999999975 3 5789999999853 3469999999999999999999886532 23589999999984
Q ss_pred cCCCCCccEEEEEeccccccCCEEeEEEEeCC
Q 038990 459 RLRSKESLGYVDINLHDVLHNGRLKEKYHLIN 490 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 490 (505)
.+.+++||++.++++++... .+|+++..
T Consensus 81 -~~~dd~lG~~~i~l~~l~~~---~~~~~~~~ 108 (111)
T cd04041 81 -FTADDRLGRVEIDLKELIED---RNWMGRRE 108 (111)
T ss_pred -CCCCCcceEEEEEHHHHhcC---CCCCcccc
Confidence 67899999999999999854 47888764
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=146.16 Aligned_cols=98 Identities=17% Similarity=0.487 Sum_probs=86.6
Q ss_pred CCCCCEEEEEEcCeE-EEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCccEEEEEeccccccCC
Q 038990 402 HHNNPYAVVICRGEQ-KKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNG 480 (505)
Q Consensus 402 ~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~ 480 (505)
+.+||||++.+++.+ .||++++++.||+|||+|.|.|.++ ...|.|+|+|++. + +++.||++.|+|.++..+.
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~--~s~L~f~VkD~D~---~-gaD~IG~a~IPL~~L~~Ge 148 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHP--FAYLEFQVKDDDV---F-GAQIIGTAKIPVRDIASGE 148 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCC--CceEEEEEEcCCc---c-CCceeEEEEEEHHHcCCCC
Confidence 578999999998765 4999999999999999999999885 3589999999883 4 4689999999999999998
Q ss_pred EEeEEEEeCCC------CCceEEEEEEEEeC
Q 038990 481 RLKEKYHLINS------KNGAVQVEIKWKAI 505 (505)
Q Consensus 481 ~~~~~~~L~~~------~~G~i~l~~~~~~~ 505 (505)
..+.|++|.+. ++|+|+++++|+|+
T Consensus 149 ~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv 179 (868)
T PLN03008 149 RISGWFPVLGASGKPPKAETAIFIDMKFTPF 179 (868)
T ss_pred ceEEEEEccccCCCCCCCCcEEEEEEEEEEc
Confidence 88999999864 26899999999985
|
|
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.7e-13 Score=115.90 Aligned_cols=100 Identities=25% Similarity=0.499 Sum_probs=87.0
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccC-CCCCccCceEEEEeeCCCC--CCeEEEEEEEccCCccCCC
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKK-CRDPIWNEEFQFDFEEAPL--KEKIHIEVKSKRRGLRLRS 462 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~--~~~l~i~V~d~~~~~~~~~ 462 (505)
+|+|.+|++|+.. +.+||||++++++..++|+++++ +.||.|||.|.|.+..+.. .+.|.|+|||++. +.+
T Consensus 4 ~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~---~~~ 80 (124)
T cd04049 4 EVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN---FSD 80 (124)
T ss_pred EEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc---CCC
Confidence 6899999999763 58999999999988889998885 8999999999999987632 3589999999984 678
Q ss_pred CCccEEEEEeccccccCCEEeEEEEeCCC
Q 038990 463 KESLGYVDINLHDVLHNGRLKEKYHLINS 491 (505)
Q Consensus 463 d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 491 (505)
+++||++.++++++..++..+.||+|...
T Consensus 81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 89999999999999987777899999764
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-13 Score=115.74 Aligned_cols=106 Identities=28% Similarity=0.433 Sum_probs=87.0
Q ss_pred EEEEeeecCCCC--CCCCCCEEEEEEcCe-EEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCc
Q 038990 389 KATEYGAKDLEG--KHHNNPYAVVICRGE-QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKES 465 (505)
Q Consensus 389 ~v~v~~a~~L~~--~~~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~ 465 (505)
.|+|.+|+.+.. .+.+||||++++++. .++|++++++.||+|||+|.|.+.. .+.|.|+|||++. .+.+++
T Consensus 5 ~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~---~~~l~~~V~d~~~---~~~~~~ 78 (125)
T cd04021 5 QITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP---QSTLEFKVWSHHT---LKADVL 78 (125)
T ss_pred EEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC---CCEEEEEEEeCCC---CCCCcE
Confidence 688888884433 247999999999887 6799999999999999999999864 3689999999984 678999
Q ss_pred cEEEEEeccccccCCE-----EeEEEEeCCCC------CceEEEEE
Q 038990 466 LGYVDINLHDVLHNGR-----LKEKYHLINSK------NGAVQVEI 500 (505)
Q Consensus 466 lG~~~i~L~~l~~~~~-----~~~~~~L~~~~------~G~i~l~~ 500 (505)
||++.++|+++..... ...|++|.... .|+|++++
T Consensus 79 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 79 LGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 9999999999987431 34689996433 79988875
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-13 Score=117.71 Aligned_cols=88 Identities=25% Similarity=0.334 Sum_probs=76.1
Q ss_pred EEEEEeeecCCCC--CCCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCc
Q 038990 388 GKATEYGAKDLEG--KHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKES 465 (505)
Q Consensus 388 a~v~v~~a~~L~~--~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~ 465 (505)
.+|+|++|++|+. .+.+||||+++++++.++|++++++.||+|||+|.|........+.|.|+|||++. .+.+++
T Consensus 30 L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~---~s~dd~ 106 (127)
T cd04032 30 LTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN---GWDDDL 106 (127)
T ss_pred EEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC---CCCCCe
Confidence 4899999999975 35789999999998888999999999999999999985443345689999999984 678999
Q ss_pred cEEEEEecccccc
Q 038990 466 LGYVDINLHDVLH 478 (505)
Q Consensus 466 lG~~~i~L~~l~~ 478 (505)
||++.++|.....
T Consensus 107 IG~~~i~l~~~~~ 119 (127)
T cd04032 107 LGTCSVVPEAGVH 119 (127)
T ss_pred eEEEEEEecCCce
Confidence 9999999987664
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-14 Score=137.07 Aligned_cols=214 Identities=27% Similarity=0.350 Sum_probs=158.3
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEE--eecC-CCCEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLT--VKDP-ETQVLQLH 331 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~--v~~~-~~~~L~v~ 331 (505)
++.....+..++..|++|++++..+..|||++..+.+. +..+.+|++..+++||.|+|+-... ..+. ....+++.
T Consensus 88 y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~ 167 (362)
T KOG1013|consen 88 YDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKV 167 (362)
T ss_pred hhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhhee
Confidence 45567889999999999999999999999999998764 3344688899999999999865443 3222 24467788
Q ss_pred EEEcCCCCCCcccEEEEEECccCCCCCeeEEEEeccccCCC--CCccccccccccc-ce--------EEEEEeeecCCCC
Q 038990 332 VYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNP--NDPQDKKFERKES-EV--------GKATEYGAKDLEG 400 (505)
Q Consensus 332 v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~--~~~~~~~~~g~~~-~~--------a~v~v~~a~~L~~ 400 (505)
+.|.+.+..++++|+..+++..+.+.+.+.+...|.+.+.+ .+.....++|.+. ++ ..+++..|.+|..
T Consensus 168 vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~s 247 (362)
T KOG1013|consen 168 VCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTPGLIVTIIRCSHLAS 247 (362)
T ss_pred eccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCCceEEEEEEeeeeec
Confidence 99999999999999999999999888765544433333221 1111112333211 11 2788888888854
Q ss_pred ---CCCCCCEEEEEEcCe-----EEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCCccCCCCCccEEEEE
Q 038990 401 ---KHHNNPYAVVICRGE-----QKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRGLRLRSKESLGYVDI 471 (505)
Q Consensus 401 ---~~~~dpyv~v~~~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~d~~lG~~~i 471 (505)
++.+||||..++... ++||.+.++|.||+||+.|.|.+....+. .++.|.|||++. .++.+++|-+..
T Consensus 248 sDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~---G~s~d~~GG~~~ 324 (362)
T KOG1013|consen 248 SDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDI---GKSNDSIGGSML 324 (362)
T ss_pred cccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCC---CcCccCCCcccc
Confidence 478999999998642 45999999999999999999999876553 389999999984 346777776655
Q ss_pred ec
Q 038990 472 NL 473 (505)
Q Consensus 472 ~L 473 (505)
.+
T Consensus 325 g~ 326 (362)
T KOG1013|consen 325 GG 326 (362)
T ss_pred cc
Confidence 44
|
|
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.1e-13 Score=113.09 Aligned_cols=99 Identities=25% Similarity=0.379 Sum_probs=85.9
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCeE-EEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCC
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGEQ-KKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKE 464 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~ 464 (505)
+|.|++|++|+.. +.+||||++++++.. ++|+++.++.||.|||+|.|.+... .++.+.|+|||++. .++++
T Consensus 2 ~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~-~~~~l~~~v~d~~~---~~~~~ 77 (115)
T cd04040 2 TVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSR-VRAVLKVEVYDWDR---GGKDD 77 (115)
T ss_pred EEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccC-CCCEEEEEEEeCCC---CCCCC
Confidence 5889999999763 478999999997644 6999999999999999999999765 34689999999984 67889
Q ss_pred ccEEEEEeccccccCCEEeEEEEeCCC
Q 038990 465 SLGYVDINLHDVLHNGRLKEKYHLINS 491 (505)
Q Consensus 465 ~lG~~~i~L~~l~~~~~~~~~~~L~~~ 491 (505)
+||++.+++.++..+...+.|++|...
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~~~~L~~~ 104 (115)
T cd04040 78 LLGSAYIDLSDLEPEETTELTLPLDGQ 104 (115)
T ss_pred ceEEEEEEHHHcCCCCcEEEEEECcCC
Confidence 999999999999888778899999754
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-13 Score=117.55 Aligned_cols=101 Identities=22% Similarity=0.308 Sum_probs=80.3
Q ss_pred ceEEEEEeeecCCCC---C-CCCCCEEEEEEcC---eEEEeecccCCCCCccCceEEEE-eeCCCC-CCeEEEEEEEccC
Q 038990 386 EVGKATEYGAKDLEG---K-HHNNPYAVVICRG---EQKKTKMIKKCRDPIWNEEFQFD-FEEAPL-KEKIHIEVKSKRR 456 (505)
Q Consensus 386 ~~a~v~v~~a~~L~~---~-~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~-v~~~~~-~~~l~i~V~d~~~ 456 (505)
+..+|+|++|++|+. . +.+||||++++.. +.+||++++++.||+|||+|.|. +..... +..|.++|||++.
T Consensus 16 ~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~ 95 (128)
T cd08388 16 KALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDR 95 (128)
T ss_pred CEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCC
Confidence 345899999999975 2 5789999999853 34599999999999999999993 432222 2379999999874
Q ss_pred CccCCCCCccEEEEEeccccccC--CEEeEEEEeC
Q 038990 457 GLRLRSKESLGYVDINLHDVLHN--GRLKEKYHLI 489 (505)
Q Consensus 457 ~~~~~~d~~lG~~~i~L~~l~~~--~~~~~~~~L~ 489 (505)
++++++||++.++|+++.-. ++...|.+|.
T Consensus 96 ---~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 96 ---YSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred ---CCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 77899999999999998654 4667787764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.6e-14 Score=110.07 Aligned_cols=85 Identities=35% Similarity=0.597 Sum_probs=76.1
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcc
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDK 343 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~ 343 (505)
|+|+|++|+||+..+..+.+||||++++++......+|+++.++.+|.|+|+|.|.+..+..+.|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 78999999999998878899999999998754344799999999999999999999877777789999999999988999
Q ss_pred cEEEE
Q 038990 344 LGMQV 348 (505)
Q Consensus 344 lG~~~ 348 (505)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-13 Score=115.85 Aligned_cols=99 Identities=20% Similarity=0.238 Sum_probs=82.3
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEc---CeEEEeecccCCCCCccCceEEEEeeCC--CCCCeEEEEEEEccCCcc
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICR---GEQKKTKMIKKCRDPIWNEEFQFDFEEA--PLKEKIHIEVKSKRRGLR 459 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~---~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~~l~i~V~d~~~~~~ 459 (505)
..|.|++|++|+.. +.+||||++++. ....+|++++++.||+|||.|.|.+... ..+..|.++|||++.
T Consensus 18 L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~--- 94 (125)
T cd08386 18 LTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR--- 94 (125)
T ss_pred EEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC---
Confidence 48999999999753 579999999994 3456999999999999999999975321 123479999999984
Q ss_pred CCCCCccEEEEEeccccccCCEEeEEEEeC
Q 038990 460 LRSKESLGYVDINLHDVLHNGRLKEKYHLI 489 (505)
Q Consensus 460 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 489 (505)
++.+++||++.++++++......+.||.|.
T Consensus 95 ~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 95 FSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 678899999999999998777778999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-13 Score=117.02 Aligned_cols=98 Identities=20% Similarity=0.265 Sum_probs=81.8
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC---eEEEeecccCCCCCccCceEEEE-eeCCCC-CCeEEEEEEEccCCcc
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG---EQKKTKMIKKCRDPIWNEEFQFD-FEEAPL-KEKIHIEVKSKRRGLR 459 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~-v~~~~~-~~~l~i~V~d~~~~~~ 459 (505)
..|+|++|+||+.. +.+||||++.+.. .+++|+++++ .||+|||+|.|. +..... +..|.++|++++.
T Consensus 18 L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~--- 93 (124)
T cd08389 18 LTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVER--- 93 (124)
T ss_pred EEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCC---
Confidence 48999999999763 5789999988743 3459999888 999999999998 654322 3479999999985
Q ss_pred CCCCCccEEEEEeccccccCCEEeEEEEeC
Q 038990 460 LRSKESLGYVDINLHDVLHNGRLKEKYHLI 489 (505)
Q Consensus 460 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 489 (505)
++++++||++.++|+++..+.....||+|.
T Consensus 94 ~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 94 MRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred cccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 778999999999999998777789999985
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-13 Score=122.31 Aligned_cols=102 Identities=20% Similarity=0.245 Sum_probs=83.7
Q ss_pred ceEEEEEeeecCCCCC---CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCC-C-CCCeEEEEEEEcc
Q 038990 386 EVGKATEYGAKDLEGK---HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEA-P-LKEKIHIEVKSKR 455 (505)
Q Consensus 386 ~~a~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~-~-~~~~l~i~V~d~~ 455 (505)
....|+|++|++|+.. +.+||||++++.. ..++|++++++.||+|||.|.|.+... . .+..|.|+|||++
T Consensus 27 g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d 106 (162)
T cd04020 27 GELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHD 106 (162)
T ss_pred ceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCC
Confidence 3458999999999864 5899999999842 456999999999999999999985322 1 2347999999998
Q ss_pred CCccCCCCCccEEEEEeccccccCCEEeEEEEeCC
Q 038990 456 RGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLIN 490 (505)
Q Consensus 456 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 490 (505)
. ++++++||++.++++++.......+||.+.+
T Consensus 107 ~---~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 107 K---LSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred C---CCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 4 6789999999999999887666788888864
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.7e-14 Score=122.43 Aligned_cols=111 Identities=18% Similarity=0.307 Sum_probs=87.7
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC------eEEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCC
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG------EQKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRG 457 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~------~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~ 457 (505)
..|+|.+|+||+.. +.+||||++++.. .++||++++++.||+|||+|.|.+...... ..|.|+||+.+.
T Consensus 17 L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~- 95 (138)
T cd08408 17 LSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRK- 95 (138)
T ss_pred EEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCC-
Confidence 48999999999763 5799999999953 135999999999999999999999754333 489999999984
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEEEeC
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWKAI 505 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~~~~ 505 (505)
.+++++||++.+++...-. ....+|+.+..+++-.|. +|+++
T Consensus 96 --~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~~~~~~v~---~WH~l 137 (138)
T cd08408 96 --MKRKEMIGWFSLGLNSSGE-EEEEHWNEMKESKGQQVC---RWHTL 137 (138)
T ss_pred --CCCCcEEEEEEECCcCCCc-hHHHHHHHHHhCCCCEEe---Eeeec
Confidence 7789999999999875432 234689999876555554 77764
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-13 Score=116.67 Aligned_cols=94 Identities=35% Similarity=0.497 Sum_probs=80.4
Q ss_pred EEEEEEeeccCccccC--CCCCCCcEEEEEECCee---cceeeeeeeCCCC-CCeEceeEEEEeecCCCCEEEEEEEEcC
Q 038990 263 ILHVKVIRAIRLLKMD--IFGASDPYVQLSLSGER---IPAKKTSVKMKTL-NPEWNEDFKLTVKDPETQVLQLHVYDWE 336 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d--~~g~~dpyv~v~l~~~~---~~~~~T~~~~~t~-nP~wne~f~~~v~~~~~~~L~v~v~d~d 336 (505)
.|+|+|++|+||+..+ ..+.+||||++++.+.. ...++|+++.++. ||.|||+|.|.+..+....|.++|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999887 56889999999985432 2346888887776 9999999999998766678999999999
Q ss_pred CCCCCcccEEEEEECccCCCC
Q 038990 337 KVGTHDKLGMQVVPLRSLTPN 357 (505)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~~ 357 (505)
.. ++++||++.++++++..+
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~g 102 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQG 102 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcCc
Confidence 87 899999999999999654
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.3e-14 Score=121.41 Aligned_cols=110 Identities=19% Similarity=0.368 Sum_probs=88.2
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~ 458 (505)
.+|.|.+|++|+.. +.+||||++++.+ ..++|++++++.||+|||+|.|.+.....+ ..|.|+|||++.
T Consensus 17 l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~-- 94 (136)
T cd08402 17 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDR-- 94 (136)
T ss_pred EEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCC--
Confidence 47899999999763 5799999999953 245899999999999999999998654332 379999999984
Q ss_pred cCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEEEeC
Q 038990 459 RLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWKAI 505 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~~~~ 505 (505)
++++++||++.+++... +....+|+++...+...+. +|+.|
T Consensus 95 -~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~~~~~~~---~wh~~ 135 (136)
T cd08402 95 -IGKNDPIGKVVLGCNAT--GAELRHWSDMLASPRRPIA---QWHTL 135 (136)
T ss_pred -CCCCceeEEEEECCccC--ChHHHHHHHHHhCCCCeee---EEEEc
Confidence 67899999999999764 4456889999887666665 66543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.2e-14 Score=120.75 Aligned_cols=109 Identities=20% Similarity=0.276 Sum_probs=85.4
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~ 458 (505)
..|+|++|++|+.. +.+||||++++.+ ..++|++++++.||+|||+|.|.+..... ...+.|+|||++.
T Consensus 17 L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~-- 94 (136)
T cd08404 17 LTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDR-- 94 (136)
T ss_pred EEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCC--
Confidence 47899999999763 5889999999853 23589999999999999999999875432 2478999999985
Q ss_pred cCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEEEe
Q 038990 459 RLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWKA 504 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~~~ 504 (505)
++++++||++.+++.. ......+|++|.+.+.-.| .+|+.
T Consensus 95 -~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~~i---~~Wh~ 134 (136)
T cd08404 95 -VTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRRQI---AEWHM 134 (136)
T ss_pred -CCCCccEEEEEECCcC--CCchHHHHHHHHhCCCCee---eEEEe
Confidence 7789999999999998 3445678999876543223 25654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.5e-13 Score=115.00 Aligned_cols=99 Identities=19% Similarity=0.220 Sum_probs=83.6
Q ss_pred EEEEEeeecCCCCC----CCCCCEEEEEEcC---eEEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCCcc
Q 038990 388 GKATEYGAKDLEGK----HHNNPYAVVICRG---EQKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRGLR 459 (505)
Q Consensus 388 a~v~v~~a~~L~~~----~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~ 459 (505)
..|.|.+|++|+.. +.+||||++++.. ..++|++++++.||+|||.|.|.+...... ..|.|+|||++.
T Consensus 16 L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~--- 92 (123)
T cd08390 16 LTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR--- 92 (123)
T ss_pred EEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc---
Confidence 48999999999753 4789999999842 346899999999999999999998754332 479999999884
Q ss_pred CCCCCccEEEEEeccccccCCEEeEEEEeC
Q 038990 460 LRSKESLGYVDINLHDVLHNGRLKEKYHLI 489 (505)
Q Consensus 460 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 489 (505)
.+++++||++.++|+++........|++|.
T Consensus 93 ~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 93 FSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred CCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 667899999999999999877778999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.2e-14 Score=120.99 Aligned_cols=103 Identities=20% Similarity=0.318 Sum_probs=83.6
Q ss_pred eEEEEEeeecCCCCC---CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccCC
Q 038990 387 VGKATEYGAKDLEGK---HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRRG 457 (505)
Q Consensus 387 ~a~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~ 457 (505)
...|+|++|++|+.. +.+||||++++.+ ..++|++++++.||+|||+|.|.+..... ...|.++|||++.
T Consensus 14 ~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~- 92 (133)
T cd08384 14 GLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDI- 92 (133)
T ss_pred EEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCC-
Confidence 458999999999763 5799999999953 24599999999999999999999875433 2479999999874
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCc
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNG 494 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G 494 (505)
.+++++||++.++++. .++...+||++...++-
T Consensus 93 --~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~ 125 (133)
T cd08384 93 --GKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDK 125 (133)
T ss_pred --CCCccEEEEEEEecCC--CCchHHHHHHHHhCCCC
Confidence 6678999999999985 33455789999776543
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.1e-13 Score=143.57 Aligned_cols=106 Identities=26% Similarity=0.492 Sum_probs=91.0
Q ss_pred eEEEEEEEeeccCccccCC------------------------------------------CCCCCcEEEEEECCeecce
Q 038990 261 VGILHVKVIRAIRLLKMDI------------------------------------------FGASDPYVQLSLSGERIPA 298 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~------------------------------------------~g~~dpyv~v~l~~~~~~~ 298 (505)
.|.|.++|.+|++|+.+|. .+.+||||++.+++.+.
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv-- 90 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATL-- 90 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcce--
Confidence 5888999999998875321 24679999999986543
Q ss_pred eeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcccEEEEEECccCCCCCeeEEEEeccccC
Q 038990 299 KKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNT 370 (505)
Q Consensus 299 ~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~~ 370 (505)
.||++++++.||+|||+|.|.+.++. ..|.|+|||+|.++ +++||++.+|++++..++..+.|++|....
T Consensus 91 ~RTrVi~n~~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~ 160 (868)
T PLN03008 91 ARTRVLKNSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGAS 160 (868)
T ss_pred eeEEeCCCCCCCCcceeEEEEecCCC-ceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccC
Confidence 58999999999999999999998754 58999999999986 589999999999999999999999997754
|
|
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.46 E-value=6e-13 Score=115.39 Aligned_cols=102 Identities=19% Similarity=0.255 Sum_probs=86.8
Q ss_pred CeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCC
Q 038990 260 PVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVG 339 (505)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~ 339 (505)
-...|.|.|++|++|+.++ +|||.+.+++... .||+++.++.||.|+|+|.|.... ....+.|.||+.+...
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~v--aRT~v~~~~~nP~W~E~F~f~~~~-~~~~l~v~v~k~~~~~ 80 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLY--ARTTSKLKTDTLFWGEHFEFSNLP-PVSVITVNLYRESDKK 80 (146)
T ss_pred EEEEEEEEEEEccCCCCcC-----CceEEEEECCEEE--EEEEEEcCCCCCcceeeEEecCCC-cccEEEEEEEEccCcc
Confidence 4578999999999998865 8999999998764 599999999999999999997644 3467999998765322
Q ss_pred ----CCcccEEEEEECccCCCCCeeEEEEecccc
Q 038990 340 ----THDKLGMQVVPLRSLTPNETKELTLDLVKN 369 (505)
Q Consensus 340 ----~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~ 369 (505)
++++||++.||+.++..+...+.|+++...
T Consensus 81 ~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~ 114 (146)
T cd04013 81 KKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTP 114 (146)
T ss_pred ccccCCcEEEEEEEEHHHhcCCCcccEEEEeecC
Confidence 678999999999999998888999998754
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.5e-14 Score=120.38 Aligned_cols=110 Identities=23% Similarity=0.363 Sum_probs=90.9
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcCe-----EEEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRGE-----QKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~ 458 (505)
..|+|++|++|+.. +.+||||++++.+. .++|++++++.||.|||+|.|.+..... ...|.|+|||.+.
T Consensus 16 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~-- 93 (134)
T cd00276 16 LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDS-- 93 (134)
T ss_pred EEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCC--
Confidence 58999999999763 58999999999653 4599999999999999999999876532 3589999999984
Q ss_pred cCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEEEeC
Q 038990 459 RLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWKAI 505 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~~~~ 505 (505)
..++++||.+.+++++ .+...++||+|.++.+..+. +|++|
T Consensus 94 -~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~~~---~wh~~ 134 (134)
T cd00276 94 -VGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKPIA---RWHKL 134 (134)
T ss_pred -CCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCceE---EeeeC
Confidence 5788999999999999 45566899999988766555 77764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-12 Score=106.86 Aligned_cols=105 Identities=19% Similarity=0.291 Sum_probs=75.8
Q ss_pred EEEEeeecCCCCCCCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCC----cc
Q 038990 389 KATEYGAKDLEGKHHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRG----LR 459 (505)
Q Consensus 389 ~v~v~~a~~L~~~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~----~~ 459 (505)
.|+|++|++|++ .+||||++++++ ...||+++++|.||+|||+|+|.+.. .+.|.+.|||++.. -.
T Consensus 2 ~V~V~~A~~L~~--~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~---s~~L~~~v~d~~~~~~~~d~ 76 (118)
T cd08686 2 NVIVHSAQGFKQ--SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG---SQTLRILCYEKCYSKVKLDG 76 (118)
T ss_pred EEEEEeCCCCCC--CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC---CCEEEEEEEEcccccccccc
Confidence 589999999975 699999999964 23699999999999999999999964 35899999998310 02
Q ss_pred CCCCCccEEEEEecc--ccccCCEEeEEEEeCCCCCceEEEEEE
Q 038990 460 LRSKESLGYVDINLH--DVLHNGRLKEKYHLINSKNGAVQVEIK 501 (505)
Q Consensus 460 ~~~d~~lG~~~i~L~--~l~~~~~~~~~~~L~~~~~G~i~l~~~ 501 (505)
.+.|+.+|+..+.|+ .+..++....-+.|.+ =+|.++++
T Consensus 77 ~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~~---~~~~~s~~ 117 (118)
T cd08686 77 EGTDAIMGKGQIQLDPQSLQTKKWQEKVISMNG---ITVNLSIK 117 (118)
T ss_pred cCcccEEEEEEEEECHHHhccCCeeEEEEEecC---EEEEEEEe
Confidence 467899977777775 3444333334455532 24444444
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.6e-13 Score=116.56 Aligned_cols=92 Identities=27% Similarity=0.477 Sum_probs=77.9
Q ss_pred EEEEEeeecCCCC---CCCCCCEEEEEEcCe-----------------------------EEEeecccCCCCCccCceEE
Q 038990 388 GKATEYGAKDLEG---KHHNNPYAVVICRGE-----------------------------QKKTKMIKKCRDPIWNEEFQ 435 (505)
Q Consensus 388 a~v~v~~a~~L~~---~~~~dpyv~v~~~~~-----------------------------~~kT~v~~~t~nP~wne~f~ 435 (505)
.+|+|++|++|.. .+.+||||++++... .++|++++++.||+|||+|.
T Consensus 30 L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~ 109 (153)
T cd08676 30 LKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFR 109 (153)
T ss_pred EEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccccEEE
Confidence 4899999999975 368999999998531 25899999999999999999
Q ss_pred EEeeCCCCCCeEEEEEEEccCCccCCCCCccEEEEEeccccccCCEEeEEEEe
Q 038990 436 FDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHL 488 (505)
Q Consensus 436 f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 488 (505)
|.+... .+..|.|+|||++ +++||++.++++++.. ...++||+|
T Consensus 110 f~v~~~-~~~~L~i~V~D~d-------d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 110 FEVEDV-SNDQLHLDIWDHD-------DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred EEeccC-CCCEEEEEEEecC-------CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999765 3468999999884 6899999999999984 446899987
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.4e-13 Score=112.81 Aligned_cols=99 Identities=20% Similarity=0.294 Sum_probs=80.3
Q ss_pred EEeeecCCCCC---CCCCCEEEEEEcCeE-------EEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCc-c
Q 038990 391 TEYGAKDLEGK---HHNNPYAVVICRGEQ-------KKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGL-R 459 (505)
Q Consensus 391 ~v~~a~~L~~~---~~~dpyv~v~~~~~~-------~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~-~ 459 (505)
..++|++|+.. +.+||||++++.+.. ++|++++++.||+|||+|.|.+... ..+.+.++|||++... .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~-~~~~l~~~V~d~d~~~~~ 83 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFE-EVQKLRFEVYDVDSKSKD 83 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeE-eeeEEEEEEEEecCCcCC
Confidence 34688999753 578999999997653 6999999999999999999987543 3458999999998400 0
Q ss_pred CCCCCccEEEEEeccccccCCEEeEEEEeCC
Q 038990 460 LRSKESLGYVDINLHDVLHNGRLKEKYHLIN 490 (505)
Q Consensus 460 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 490 (505)
.+++++||++.++++++..+.....|++|..
T Consensus 84 ~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 84 LSDHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 5688999999999999998776678999943
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.7e-13 Score=111.89 Aligned_cols=86 Identities=28% Similarity=0.361 Sum_probs=73.0
Q ss_pred CCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcccEEEEEECccCCCC-
Q 038990 279 IFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPN- 357 (505)
Q Consensus 279 ~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~- 357 (505)
.+|.+||||+++++++.. ++|++++++.||.|||+|.|.+.+...+.|.|+|||++.. +|++||++.++|+++...
T Consensus 9 ~~G~~dPYv~v~v~~~~~--~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 9 KTGLLSPYAELYLNGKLV--YTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred cCCCCCceEEEEECCEEE--EEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence 468899999999987542 5888999999999999999999876678899999999988 899999999999998643
Q ss_pred CeeEEEEecc
Q 038990 358 ETKELTLDLV 367 (505)
Q Consensus 358 ~~~~~~l~l~ 367 (505)
.....|++|.
T Consensus 86 ~~~~~w~~L~ 95 (111)
T cd04052 86 SVGQQWFPLS 95 (111)
T ss_pred hccceeEECC
Confidence 3346777774
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-13 Score=118.99 Aligned_cols=105 Identities=24% Similarity=0.339 Sum_probs=83.3
Q ss_pred EEEEEeeecCCCC---CCCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEG---KHHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~ 458 (505)
..|+|++|++|+. .+.+||||++++.. ..++|++++++.||+|||.|.|.+..... +..|.|+|||++.
T Consensus 17 L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~-- 94 (136)
T cd08405 17 ITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDR-- 94 (136)
T ss_pred EEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCC--
Confidence 4899999999975 35899999999832 23589999999999999999999864322 3479999999984
Q ss_pred cCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEE
Q 038990 459 RLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQ 497 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~ 497 (505)
.+.+++||++.+++.+. +....+|+++...+...+.
T Consensus 95 -~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~~~ 130 (136)
T cd08405 95 -LSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQPVA 130 (136)
T ss_pred -CCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCchh
Confidence 67889999999999875 3445788888766544443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.7e-13 Score=116.68 Aligned_cols=109 Identities=21% Similarity=0.319 Sum_probs=83.6
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCCC-eEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKE-KIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~-~l~i~V~d~~~~~ 458 (505)
.+|+|++|++|+.. +.+||||++++.. ..++|+++++|.||+|||+|.|.+......+ .|.|+|||++.
T Consensus 16 L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~-- 93 (135)
T cd08410 16 LNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNV-- 93 (135)
T ss_pred EEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCC--
Confidence 48999999999763 5899999999832 2469999999999999999999996543433 79999999984
Q ss_pred cCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEEE
Q 038990 459 RLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWK 503 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~~ 503 (505)
.+++++||++.++...... ....+|+.+.+..+-.|. +|+
T Consensus 94 -~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~~~~~~~~---~wh 133 (135)
T cd08410 94 -KSSNDFIGRIVIGQYSSGP-SETNHWRRMLNSQRTAVE---QWH 133 (135)
T ss_pred -CCCCcEEEEEEEcCccCCc-hHHHHHHHHHhCCCCEee---Eee
Confidence 6789999999876643322 235789999876544443 554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-12 Score=111.24 Aligned_cols=86 Identities=19% Similarity=0.318 Sum_probs=74.3
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCeE--EEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCC
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGEQ--KKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSK 463 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~~--~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d 463 (505)
+|.|++|++|+.. +.+||||++++++.. .+|++++++.||+|||+|.|.+..+ ..+.|.++|||++. .+.+
T Consensus 3 rV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~-~~~~L~~~V~d~d~---~~~d 78 (124)
T cd04037 3 RVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLP-GNSILKISVMDYDL---LGSD 78 (124)
T ss_pred EEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCC-CCCEEEEEEEECCC---CCCC
Confidence 6899999999753 589999999998765 4788899999999999999998654 34689999999984 6789
Q ss_pred CccEEEEEecccccc
Q 038990 464 ESLGYVDINLHDVLH 478 (505)
Q Consensus 464 ~~lG~~~i~L~~l~~ 478 (505)
++||++.++|++...
T Consensus 79 d~iG~~~i~l~~~~~ 93 (124)
T cd04037 79 DLIGETVIDLEDRFF 93 (124)
T ss_pred ceeEEEEEeeccccc
Confidence 999999999998764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.7e-12 Score=108.24 Aligned_cols=106 Identities=22% Similarity=0.318 Sum_probs=86.4
Q ss_pred EEEEeeecCCCC-----CCCCCCEEEEEEc------CeEEEeecccCCC-CCccCceEEEEeeCCCCCCeEEEEEEEccC
Q 038990 389 KATEYGAKDLEG-----KHHNNPYAVVICR------GEQKKTKMIKKCR-DPIWNEEFQFDFEEAPLKEKIHIEVKSKRR 456 (505)
Q Consensus 389 ~v~v~~a~~L~~-----~~~~dpyv~v~~~------~~~~kT~v~~~t~-nP~wne~f~f~v~~~~~~~~l~i~V~d~~~ 456 (505)
+|+|++|++|+. .+.+||||++++. ....+|++++++. ||+|||+|.|.+..+. ...|.++|||++.
T Consensus 5 ~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~-~~~l~~~V~d~~~ 83 (128)
T cd00275 5 TIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE-LAFLRFVVYDEDS 83 (128)
T ss_pred EEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC-eEEEEEEEEeCCC
Confidence 789999999974 3578999999994 3456999988775 9999999999998653 3479999999984
Q ss_pred CccCCCCCccEEEEEeccccccCCEEeEEEEeCCC-----CCceEEEEEEE
Q 038990 457 GLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINS-----KNGAVQVEIKW 502 (505)
Q Consensus 457 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~~ 502 (505)
. ++++||++.++++++..+ .+|++|.+. ..|.|.++++.
T Consensus 84 ---~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 84 ---G-DDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred ---C-CCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 4 889999999999998544 478999753 26889888875
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.6e-12 Score=107.02 Aligned_cols=97 Identities=27% Similarity=0.386 Sum_probs=75.4
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCC--CCEEEEEEEEcCCCCCC
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPE--TQVLQLHVYDWEKVGTH 341 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~--~~~L~v~v~d~d~~~~d 341 (505)
|+|+|++|++|+.. +.+||||++++++.. .++|+++++ .||.|||+|.|.+.... ...|.+.+||.+..+++
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~--~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVE--VARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEE--eEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence 78999999999976 789999999998754 258888888 99999999999996532 34677888888766556
Q ss_pred cccEEEEEECccCCCCCeeEEEEeccc
Q 038990 342 DKLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 342 ~~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
..+|+ +++..+..+...+.|++|..
T Consensus 76 ~~~g~--v~l~~~~~~~~~~~w~~L~~ 100 (117)
T cd08383 76 IVIGK--VALSKLDLGQGKDEWFPLTP 100 (117)
T ss_pred eEEEE--EEecCcCCCCcceeEEECcc
Confidence 56665 45555555666778888754
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-12 Score=111.95 Aligned_cols=89 Identities=21% Similarity=0.228 Sum_probs=75.2
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC-------eEEEeecccCCCCCccCceEEEEeeCCC---CCCeEEEEEEEc
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG-------EQKKTKMIKKCRDPIWNEEFQFDFEEAP---LKEKIHIEVKSK 454 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~-------~~~kT~v~~~t~nP~wne~f~f~v~~~~---~~~~l~i~V~d~ 454 (505)
.+|+|.+|++|+.. +.+||||++++.+ ..++|+++++|.||+|||+|.|.+...+ .+..|.|+|||+
T Consensus 18 L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~ 97 (133)
T cd04009 18 LRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDY 97 (133)
T ss_pred EEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEec
Confidence 48999999999763 5899999999953 3469999999999999999999997532 235899999999
Q ss_pred cCCccCCCCCccEEEEEeccccccC
Q 038990 455 RRGLRLRSKESLGYVDINLHDVLHN 479 (505)
Q Consensus 455 ~~~~~~~~d~~lG~~~i~L~~l~~~ 479 (505)
+. .+++++||++.++|+++..-
T Consensus 98 d~---~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 98 DL---LGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred CC---CCCCcEeEEEEEeHHHCCcc
Confidence 84 67799999999999998863
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.38 E-value=8e-13 Score=114.53 Aligned_cols=105 Identities=19% Similarity=0.257 Sum_probs=82.0
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~ 458 (505)
.+|+|++|++|+.. +.+||||++++.. ..++|++++++.||.|||+|.|.+...... ..|.|+|||++.
T Consensus 16 L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~-- 93 (134)
T cd08403 16 LTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDR-- 93 (134)
T ss_pred EEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC--
Confidence 48999999999863 5899999999842 245899999999999999999998654333 369999999984
Q ss_pred cCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEE
Q 038990 459 RLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQ 497 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~ 497 (505)
.+++++||++.+++... +....+|+++...+.-.+.
T Consensus 94 -~~~~~~IG~~~l~~~~~--~~~~~~w~~~~~~~~~~~~ 129 (134)
T cd08403 94 -VGHNELIGVCRVGPNAD--GQGREHWNEMLANPRKPIA 129 (134)
T ss_pred -CCCCceeEEEEECCCCC--CchHHHHHHHHHCCCCeee
Confidence 67899999999998732 3344688888765444443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-12 Score=149.51 Aligned_cols=107 Identities=21% Similarity=0.347 Sum_probs=92.6
Q ss_pred cCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCC-CCEEEEEEEEcC
Q 038990 258 KKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPE-TQVLQLHVYDWE 336 (505)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~-~~~L~v~v~d~d 336 (505)
+.-.|.|+|+|++|.||. +..|.+||||++.++++.. +||++++++.||+|||+|.|.+.++. ++.++++|||+|
T Consensus 1976 ~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~--~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d 2051 (2102)
T PLN03200 1976 QCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPP--RQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN 2051 (2102)
T ss_pred hhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCc--ccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC
Confidence 345799999999999998 4468999999999996532 58999999999999999999998764 467999999999
Q ss_pred CCCCCcccEEEEEECccCCCCCeeEEEEecccc
Q 038990 337 KVGTHDKLGMQVVPLRSLTPNETKELTLDLVKN 369 (505)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~ 369 (505)
.+++ +.+|.+.+++.++..+.....|++|.++
T Consensus 2052 ~f~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~~ 2083 (2102)
T PLN03200 2052 TFGK-SSLGKVTIQIDRVVMEGTYSGEYSLNPE 2083 (2102)
T ss_pred ccCC-CCCceEEEEHHHHhcCceeeeeeecCcc
Confidence 9855 4999999999999988888888888753
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-11 Score=105.67 Aligned_cols=95 Identities=31% Similarity=0.336 Sum_probs=80.4
Q ss_pred EEEEEeeccCccccC--CCC--CCCcEEEEEECCeecceeeeeeeCCCCC--CeEceeEEEEeecC--------------
Q 038990 264 LHVKVIRAIRLLKMD--IFG--ASDPYVQLSLSGERIPAKKTSVKMKTLN--PEWNEDFKLTVKDP-------------- 323 (505)
Q Consensus 264 L~V~v~~a~~L~~~d--~~g--~~dpyv~v~l~~~~~~~~~T~~~~~t~n--P~wne~f~~~v~~~-------------- 323 (505)
|+|.|.+|++++..+ ..| .+||||+..+.+....+++|.+..+++| |.||+.|.|.+.-+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 799999999966543 356 4999999999886555679999999999 99999999887641
Q ss_pred ---------CCCEEEEEEEEcCCCCCCcccEEEEEECccCCCCC
Q 038990 324 ---------ETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNE 358 (505)
Q Consensus 324 ---------~~~~L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~~ 358 (505)
....|.++|||.|.+++|++||++.++|+.+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 24679999999999999999999999999888664
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.8e-12 Score=127.52 Aligned_cols=115 Identities=23% Similarity=0.284 Sum_probs=97.1
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcCeE---EEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccCCccC
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRGEQ---KKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRRGLRL 460 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~~~---~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~ 460 (505)
.+|+|.+|++|+.. +.+||||++++..++ .+|++.++|+||+|||+|.|.+....+ ...|.++|||.+. +
T Consensus 169 L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr---f 245 (421)
T KOG1028|consen 169 LTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR---F 245 (421)
T ss_pred EEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC---c
Confidence 38999999999864 468999999997654 499999999999999999999765433 4589999999994 8
Q ss_pred CCCCccEEEEEeccccccCCEEeEEEEeCCC------CCceEEEEEEEEeC
Q 038990 461 RSKESLGYVDINLHDVLHNGRLKEKYHLINS------KNGAVQVEIKWKAI 505 (505)
Q Consensus 461 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~------~~G~i~l~~~~~~~ 505 (505)
++++++|.+.++|..+........|.++... ..|+|.+++.|.|.
T Consensus 246 sr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~ 296 (421)
T KOG1028|consen 246 SRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPT 296 (421)
T ss_pred ccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecC
Confidence 9999999999999888776666789999753 14799999999873
|
|
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-11 Score=99.50 Aligned_cols=97 Identities=43% Similarity=0.662 Sum_probs=82.7
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcc
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDK 343 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~ 343 (505)
+.|+|++|++|......+..+|||++++.+......+|+++.++.||.|||+|.|.+.....+.|.++|||.+..+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 68999999999988765678999999998652223689999999999999999999977657899999999998778999
Q ss_pred cEEEEEECccCCCCCee
Q 038990 344 LGMQVVPLRSLTPNETK 360 (505)
Q Consensus 344 lG~~~i~l~~l~~~~~~ 360 (505)
+|.+.+++.++..+..+
T Consensus 82 ~G~~~~~l~~~~~~~~~ 98 (101)
T smart00239 82 IGQVTIPLSDLLLGGRH 98 (101)
T ss_pred eEEEEEEHHHcccCccc
Confidence 99999999998776543
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-11 Score=101.96 Aligned_cols=93 Identities=20% Similarity=0.446 Sum_probs=72.8
Q ss_pred EEEeeecCCCCC---CCCCCEEEEEEcCe------EEEeecccCCCCCccCceEEEEeeCC---CCCCeEEEEEEEccCC
Q 038990 390 ATEYGAKDLEGK---HHNNPYAVVICRGE------QKKTKMIKKCRDPIWNEEFQFDFEEA---PLKEKIHIEVKSKRRG 457 (505)
Q Consensus 390 v~v~~a~~L~~~---~~~dpyv~v~~~~~------~~kT~v~~~t~nP~wne~f~f~v~~~---~~~~~l~i~V~d~~~~ 457 (505)
+..++|++|+.. +.+||||++++.+. .++|++++++.||+|| .|.|.+... .....|.|+|||++.
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~- 81 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS- 81 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC-
Confidence 345689999764 58999999998653 3699999999999999 688876432 124689999999984
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEe
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHL 488 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 488 (505)
.+++++||++.++++++..+. .++|.+
T Consensus 82 --~~~d~~iG~~~~~l~~l~~~~--~~~~~~ 108 (110)
T cd04047 82 --SGKHDLIGEFETTLDELLKSS--PLEFEL 108 (110)
T ss_pred --CCCCcEEEEEEEEHHHHhcCC--CceEEe
Confidence 678999999999999998543 344544
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.9e-12 Score=128.52 Aligned_cols=102 Identities=27% Similarity=0.443 Sum_probs=88.3
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcC
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWE 336 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d 336 (505)
..+....++++|++|.+|..+|..|++||||...++..+ +||+++...+||+|||.|.|.+++ .++.++++|||.|
T Consensus 290 sskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktk---rrtrti~~~lnpvw~ekfhfechn-stdrikvrvwded 365 (1283)
T KOG1011|consen 290 SSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTK---RRTRTIHQELNPVWNEKFHFECHN-STDRIKVRVWDED 365 (1283)
T ss_pred ccccceeeEEeeeecccceecccCCCCCCcEEEeecccc---hhhHhhhhccchhhhhheeeeecC-CCceeEEEEecCc
Confidence 456788999999999999999999999999999999665 589999999999999999999987 5688999999988
Q ss_pred CC-----------CCCcccEEEEEECccCCCCCeeEE
Q 038990 337 KV-----------GTHDKLGMQVVPLRSLTPNETKEL 362 (505)
Q Consensus 337 ~~-----------~~d~~lG~~~i~l~~l~~~~~~~~ 362 (505)
.- ..|||+|+..|.++.+......|+
T Consensus 366 ~dlksklrqkl~resddflgqtvievrtlsgemdvwy 402 (1283)
T KOG1011|consen 366 NDLKSKLRQKLTRESDDFLGQTVIEVRTLSGEMDVWY 402 (1283)
T ss_pred ccHHHHHHHHhhhcccccccceeEEEEecccchhhhc
Confidence 32 468999999999988876544433
|
|
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.1e-11 Score=101.61 Aligned_cols=90 Identities=22% Similarity=0.304 Sum_probs=73.2
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeC-CCC-CCeEEEEEEEccCC
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEE-APL-KEKIHIEVKSKRRG 457 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~-~~~-~~~l~i~V~d~~~~ 457 (505)
.+|+|.+|++|+.. +.+||||++++.+ ..++|++++++.||+|||.|.|.... ... +..+.++|||++.
T Consensus 17 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~- 95 (123)
T cd04035 17 LHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDR- 95 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCC-
Confidence 47999999999753 5789999999842 34699999999999999999996322 112 3589999999974
Q ss_pred ccCCCCCccEEEEEeccccccCCE
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGR 481 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~ 481 (505)
. ++++||++.++|+++..++.
T Consensus 96 --~-~~~~iG~~~i~l~~l~~~~~ 116 (123)
T cd04035 96 --F-GNDFLGETRIPLKKLKPNQT 116 (123)
T ss_pred --c-CCeeEEEEEEEcccCCCCcc
Confidence 5 78999999999999987653
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.8e-11 Score=96.72 Aligned_cols=100 Identities=43% Similarity=0.647 Sum_probs=83.7
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcc
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDK 343 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~ 343 (505)
|.|++++|++|......+..+|||.+++.+. ...+|+++.++.||.|||.|.|.+.......+.++|||.+..+.+++
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~--~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 78 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGK--QKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF 78 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccC--ceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence 4689999999988766678999999999872 23689999999999999999999976456789999999998878899
Q ss_pred cEEEEEECccCC-CCCeeEEEEe
Q 038990 344 LGMQVVPLRSLT-PNETKELTLD 365 (505)
Q Consensus 344 lG~~~i~l~~l~-~~~~~~~~l~ 365 (505)
+|++.+++.++. .......|++
T Consensus 79 ig~~~~~l~~l~~~~~~~~~~~~ 101 (102)
T cd00030 79 LGEVEIPLSELLDSGKEGELWLP 101 (102)
T ss_pred eEEEEEeHHHhhhcCCcCcceec
Confidence 999999999988 5444455553
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.7e-11 Score=128.53 Aligned_cols=92 Identities=29% Similarity=0.422 Sum_probs=82.7
Q ss_pred eEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCC
Q 038990 261 VGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGT 340 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~ 340 (505)
.-.++|.+++|-+|.+.|.+|.+|||+++.+++.... .++..+.+|+||+|++.|++....+....+.++|||+|..++
T Consensus 612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~-d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~ 690 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTL-DRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQ 690 (1105)
T ss_pred eeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhh-hhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccc
Confidence 3466799999999999999999999999999976543 367889999999999999999988888889999999999999
Q ss_pred CcccEEEEEECcc
Q 038990 341 HDKLGMQVVPLRS 353 (505)
Q Consensus 341 d~~lG~~~i~l~~ 353 (505)
|+.+|+..++|+.
T Consensus 691 d~~iget~iDLEn 703 (1105)
T KOG1326|consen 691 DEKIGETTIDLEN 703 (1105)
T ss_pred cchhhceehhhhh
Confidence 9999999999864
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.7e-11 Score=93.33 Aligned_cols=78 Identities=32% Similarity=0.576 Sum_probs=67.6
Q ss_pred EEEEeeecCCCC---CCCCCCEEEEEEcC---eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCC
Q 038990 389 KATEYGAKDLEG---KHHNNPYAVVICRG---EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRS 462 (505)
Q Consensus 389 ~v~v~~a~~L~~---~~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~ 462 (505)
+|+|++|++|+. .+.+|||+++++++ ..++|++++++.+|.|+|.|.|.+..+.. +.|.|+|||++. .+.
T Consensus 2 ~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~-~~l~~~V~~~~~---~~~ 77 (85)
T PF00168_consen 2 TVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDL-DSLSFEVWDKDS---FGK 77 (85)
T ss_dssp EEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCG-TEEEEEEEEETS---SSS
T ss_pred EEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccc-cceEEEEEECCC---CCC
Confidence 689999999987 35899999999987 66899999999999999999999877644 469999999985 566
Q ss_pred CCccEEEE
Q 038990 463 KESLGYVD 470 (505)
Q Consensus 463 d~~lG~~~ 470 (505)
+++||++.
T Consensus 78 ~~~iG~~~ 85 (85)
T PF00168_consen 78 DELIGEVK 85 (85)
T ss_dssp EEEEEEEE
T ss_pred CCEEEEEC
Confidence 99999873
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1 | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-10 Score=92.01 Aligned_cols=85 Identities=21% Similarity=0.447 Sum_probs=72.8
Q ss_pred HHHHHhhCh-hhH-HHHHHHHHHHHHHHHHh-ccCcceeeEEEEeEEecCCCCCeEeEEEEEEc-CCceEEEeeeEEEeC
Q 038990 76 NKFVSDLWP-YLD-KAICSTARSNLEPIFAE-YIGKYCIRSVDFKTLTLGTLPPIIHGIKVCET-NENELILEPALRWAG 151 (505)
Q Consensus 76 N~~l~~~Wp-~~~-~~~~~~i~~~~~~~l~~-~~p~~~i~~i~~~~~~lG~~~P~i~~v~~~~~-~~~~~~ld~~~~~~~ 151 (505)
|.+++|++- +.+ +.+.+.+++.++..|++ .+|+| +++|++++++||+.||.|+++++.+. .++++.+|+++.|.|
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~f-l~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G 79 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSF-LDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSG 79 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCc-cCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcC
Confidence 667777554 333 78889999999999998 67998 99999999999999999999999874 455699999999999
Q ss_pred CCcEEEEEEE
Q 038990 152 NPNITLALKF 161 (505)
Q Consensus 152 ~~~i~l~~~~ 161 (505)
+..+.++.++
T Consensus 80 ~~~l~l~t~l 89 (91)
T PF10296_consen 80 GFSLTLETKL 89 (91)
T ss_pred CeEEEEEEEE
Confidence 9999988765
|
These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria []. |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.6e-10 Score=116.98 Aligned_cols=99 Identities=26% Similarity=0.444 Sum_probs=82.5
Q ss_pred eEEEEEEEeeccCcccc-----CCCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEE
Q 038990 261 VGILHVKVIRAIRLLKM-----DIFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVY 333 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~-----d~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~ 333 (505)
...|.|+|++|.+++.. +.....||||+|.+.|.. ..+++|++..++.||.|||+|.|.+..++-..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 46899999999987521 222457999999996532 23457888899999999999999999988888999999
Q ss_pred EcCCCCCCcccEEEEEECccCCCCCe
Q 038990 334 DWEKVGTHDKLGMQVVPLRSLTPNET 359 (505)
Q Consensus 334 d~d~~~~d~~lG~~~i~l~~l~~~~~ 359 (505)
|+|..++|+++|++.+|+..+..+-.
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~GyR 513 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGIR 513 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCce
Confidence 99988899999999999999998843
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.8e-10 Score=117.29 Aligned_cols=111 Identities=18% Similarity=0.349 Sum_probs=94.2
Q ss_pred EEEEeeecCCCC---------------------CCCCCCEEEEEEcCeEE-EeecccCC-CCCccCceEEEEeeCCCCCC
Q 038990 389 KATEYGAKDLEG---------------------KHHNNPYAVVICRGEQK-KTKMIKKC-RDPIWNEEFQFDFEEAPLKE 445 (505)
Q Consensus 389 ~v~v~~a~~L~~---------------------~~~~dpyv~v~~~~~~~-kT~v~~~t-~nP~wne~f~f~v~~~~~~~ 445 (505)
.++|.+|++|+. ++.+||||.+.+.+.+. +|+++.+. .||+|||+|...|... ..
T Consensus 11 ~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~--~~ 88 (808)
T PLN02270 11 HATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM--AS 88 (808)
T ss_pred EEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC--cc
Confidence 577788887752 24679999999988775 99999985 6999999999999875 36
Q ss_pred eEEEEEEEccCCccCCCCCccEEEEEeccccccCCEEeEEEEeCCCC------CceEEEEEEEEeC
Q 038990 446 KIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSK------NGAVQVEIKWKAI 505 (505)
Q Consensus 446 ~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~------~G~i~l~~~~~~~ 505 (505)
.+.|+|.|.+ .-+..+||.+.++..+++.+..+++||++.+.. ..+|+++++|.|+
T Consensus 89 ~v~f~vkd~~----~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 89 NIIFTVKDDN----PIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred eEEEEEecCC----ccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 8999999987 456679999999999999999999999998642 4599999999985
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.3e-11 Score=124.53 Aligned_cols=83 Identities=16% Similarity=0.328 Sum_probs=72.7
Q ss_pred EEEEeeecCCCC---CCCCCCEEEEEEcCeEE--EeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCC
Q 038990 389 KATEYGAKDLEG---KHHNNPYAVVICRGEQK--KTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSK 463 (505)
Q Consensus 389 ~v~v~~a~~L~~---~~~~dpyv~v~~~~~~~--kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d 463 (505)
+|++.+|-+|.. +|.+|||+++.++++.. +...+.+|.||+|++.|++.+..+ ....++++|||++. .++|
T Consensus 616 rVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp-~ek~l~v~vyd~D~---~~~d 691 (1105)
T KOG1326|consen 616 RVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLP-FEKDLIVEVYDHDL---EAQD 691 (1105)
T ss_pred EEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccc-hhhcceeEEEEeec---cccc
Confidence 688889998864 46899999999998874 888899999999999999999876 55689999999995 7889
Q ss_pred CccEEEEEeccc
Q 038990 464 ESLGYVDINLHD 475 (505)
Q Consensus 464 ~~lG~~~i~L~~ 475 (505)
+.+|..+++|++
T Consensus 692 ~~iget~iDLEn 703 (1105)
T KOG1326|consen 692 EKIGETTIDLEN 703 (1105)
T ss_pred chhhceehhhhh
Confidence 999999999974
|
|
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.8e-09 Score=87.39 Aligned_cols=96 Identities=29% Similarity=0.495 Sum_probs=80.6
Q ss_pred EEEEeeecCCCC---CCCCCCEEEEEEcC-eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCC
Q 038990 389 KATEYGAKDLEG---KHHNNPYAVVICRG-EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKE 464 (505)
Q Consensus 389 ~v~v~~a~~L~~---~~~~dpyv~v~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~ 464 (505)
.|.|++|+++.. .+.++|||.+++.+ ...+|+++.++.||.||+.|.|.+... ....+.++|++.+. ...+.
T Consensus 2 ~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~-~~~~l~i~v~~~~~---~~~~~ 77 (102)
T cd00030 2 RVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP-ESDTLTVEVWDKDR---FSKDD 77 (102)
T ss_pred EEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC-CCCEEEEEEEecCC---CCCCc
Confidence 478999999965 35899999999988 778999999999999999999999763 24689999999984 45689
Q ss_pred ccEEEEEeccccc-cCCEEeEEEEe
Q 038990 465 SLGYVDINLHDVL-HNGRLKEKYHL 488 (505)
Q Consensus 465 ~lG~~~i~L~~l~-~~~~~~~~~~L 488 (505)
++|++.+++.++. .......|++|
T Consensus 78 ~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 78 FLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred eeEEEEEeHHHhhhcCCcCcceecC
Confidence 9999999999998 55555677764
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.8e-10 Score=115.33 Aligned_cols=108 Identities=25% Similarity=0.490 Sum_probs=88.5
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCcc------
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLR------ 459 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~------ 459 (505)
+++|..|++|-.+ |.+||||.+.++..+++|+++...+||+|||.|+|.+++. .+.|.+.|||.+..+.
T Consensus 298 tltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns--tdrikvrvwded~dlksklrqk 375 (1283)
T KOG1011|consen 298 TLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS--TDRIKVRVWDEDNDLKSKLRQK 375 (1283)
T ss_pred EEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC--CceeEEEEecCcccHHHHHHHH
Confidence 7889999999653 6899999999999999999999999999999999999986 4689999999875311
Q ss_pred --CCCCCccEEEEEeccccccCCEEeEEEEeCCC-----CCceEEEEE
Q 038990 460 --LRSKESLGYVDINLHDVLHNGRLKEKYHLINS-----KNGAVQVEI 500 (505)
Q Consensus 460 --~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~ 500 (505)
..+|++||+..|.+..+- +.++-||.|... -+|-|++.+
T Consensus 376 l~resddflgqtvievrtls--gemdvwynlekrtdksavsgairlhi 421 (1283)
T KOG1011|consen 376 LTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI 421 (1283)
T ss_pred hhhcccccccceeEEEEecc--cchhhhcchhhccchhhccceEEEEE
Confidence 247899999999887664 356899999753 257665544
|
|
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.9e-09 Score=87.46 Aligned_cols=88 Identities=34% Similarity=0.610 Sum_probs=75.6
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCe---EEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCC
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGE---QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRS 462 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~---~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~ 462 (505)
.+.|++|++|... +..+|||++++.+. ..+|+.+.++.||.|||.|.|.+.... ...|.++||+++. .+.
T Consensus 3 ~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~i~v~~~~~---~~~ 78 (101)
T smart00239 3 TVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE-LAELEIEVYDKDR---FGR 78 (101)
T ss_pred EEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc-cCEEEEEEEecCC---ccC
Confidence 5789999999764 36899999999875 679999999999999999999998753 5689999999985 456
Q ss_pred CCccEEEEEeccccccCC
Q 038990 463 KESLGYVDINLHDVLHNG 480 (505)
Q Consensus 463 d~~lG~~~i~L~~l~~~~ 480 (505)
+.++|.+.+++.++..+.
T Consensus 79 ~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 79 DDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred CceeEEEEEEHHHcccCc
Confidence 899999999999987754
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-09 Score=92.41 Aligned_cols=89 Identities=18% Similarity=0.327 Sum_probs=74.2
Q ss_pred EEEEeeecCCCC-----CC--CCCCEEEEEEcC---eEEEeecccCCCC--CccCceEEEEeeCCCC-------------
Q 038990 389 KATEYGAKDLEG-----KH--HNNPYAVVICRG---EQKKTKMIKKCRD--PIWNEEFQFDFEEAPL------------- 443 (505)
Q Consensus 389 ~v~v~~a~~L~~-----~~--~~dpyv~v~~~~---~~~kT~v~~~t~n--P~wne~f~f~v~~~~~------------- 443 (505)
+|.|.+|++++. .| .+||||+..+.+ ++++|.+.+++.| |.||+.|.|.+..++.
T Consensus 3 RViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~ 82 (133)
T cd08374 3 RVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFW 82 (133)
T ss_pred EEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecccc
Confidence 688999999643 23 599999999976 3479999999999 9999999999876321
Q ss_pred ---------CCeEEEEEEEccCCccCCCCCccEEEEEeccccccCC
Q 038990 444 ---------KEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNG 480 (505)
Q Consensus 444 ---------~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~ 480 (505)
...|.++|||++. +++|++||.+.++|..+....
T Consensus 83 ~~~~~e~~~~~~L~lqvwD~D~---~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 83 SLDETEYKIPPKLTLQVWDNDK---FSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccCcceEecCcEEEEEEEECcc---cCCCCcceEEEEEhhhccccc
Confidence 2479999999995 889999999999999888754
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.9e-09 Score=110.52 Aligned_cols=99 Identities=23% Similarity=0.369 Sum_probs=81.8
Q ss_pred eEEEEEEEeeccCcccc------CCCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEE
Q 038990 261 VGILHVKVIRAIRLLKM------DIFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHV 332 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~------d~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v 332 (505)
...|.|+|+.+.+++.. +.....||||++.+-+.. ..+++|++..++.||.|||+|.|.+..++-..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 46899999999987521 112346999999985422 2246888999999999999999999988888999999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCCe
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNET 359 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~~ 359 (505)
+|+|..++|+++|++.+|+..|..+-.
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR 574 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGIH 574 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCccc
Confidence 999988899999999999999998844
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.9e-09 Score=110.01 Aligned_cols=104 Identities=24% Similarity=0.380 Sum_probs=84.0
Q ss_pred eEEEEEEEeeccCcccc--C----CCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEE
Q 038990 261 VGILHVKVIRAIRLLKM--D----IFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHV 332 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~--d----~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v 332 (505)
...|.|+|++|.+++.. + .....||||++.+-+- ...+++|+++.++.||.|||+|.|.+..++-..++|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46899999999987532 1 1123599999998652 12346899999999999999999999888777899999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCCeeEEEEecc
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLV 367 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~ 367 (505)
||+|..+.++++|++.+|++.|..+-. +++|.
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~GyR---~VpL~ 580 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGIR---SVPLH 580 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCce---eEeCc
Confidence 999988899999999999999998853 55654
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.8e-09 Score=108.83 Aligned_cols=110 Identities=22% Similarity=0.273 Sum_probs=96.5
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCeE-EEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCC
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGEQ-KKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKE 464 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~ 464 (505)
.|.|.+|+||+.. |..||||.+.+.... .+|.++.+|+.|.|.|.|.|.++.. -+.+.|-|||++ +++|+
T Consensus 8 ~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~--F~~l~fYv~D~d----~~~D~ 81 (800)
T KOG2059|consen 8 KVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRT--FRYLSFYVWDRD----LKRDD 81 (800)
T ss_pred eEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcc--eeeEEEEEeccc----ccccc
Confidence 6889999999875 589999999998876 4999999999999999999999653 358999999998 78999
Q ss_pred ccEEEEEeccccccCCEEeEEEEeCCC-----CCceEEEEEEEEe
Q 038990 465 SLGYVDINLHDVLHNGRLKEKYHLINS-----KNGAVQVEIKWKA 504 (505)
Q Consensus 465 ~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~~~~ 504 (505)
.||.+.|.=.++......+.||.|... -+|+|++++++.+
T Consensus 82 ~IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e 126 (800)
T KOG2059|consen 82 IIGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTE 126 (800)
T ss_pred ccceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEecc
Confidence 999999999998887777999999743 2899999998764
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.9e-10 Score=113.24 Aligned_cols=100 Identities=30% Similarity=0.472 Sum_probs=87.3
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCee----cceeeeeeeCCCCCCeEceeEEEEeecC----CCCEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER----IPAKKTSVKMKTLNPEWNEDFKLTVKDP----ETQVL 328 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~----~~~~~T~~~~~t~nP~wne~f~~~v~~~----~~~~L 328 (505)
+......|.|.|+.|+++.+-|.+|.|||||++.+.+.. ...++|+++.+|+||+|+|+|+|.+... +...+
T Consensus 942 y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~ 1021 (1103)
T KOG1328|consen 942 YNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAML 1021 (1103)
T ss_pred eeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceE
Confidence 455667899999999999999999999999999998754 2357999999999999999999999732 24579
Q ss_pred EEEEEEcCCCCCCcccEEEEEECccCCC
Q 038990 329 QLHVYDWEKVGTHDKLGMQVVPLRSLTP 356 (505)
Q Consensus 329 ~v~v~d~d~~~~d~~lG~~~i~l~~l~~ 356 (505)
.|+|+|+|..+.+||-|++.+.|.++..
T Consensus 1022 ~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1022 HFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred EEEeeccceecccccchHHHHhhCCCCC
Confidence 9999999999999999999999988763
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.2e-09 Score=109.56 Aligned_cols=98 Identities=28% Similarity=0.466 Sum_probs=82.4
Q ss_pred EEEEEEeeccCccccCC----CCCCCcEEEEEECCee--cceeeee-eeCCCCCCeEceeEEEEeecCCCCEEEEEEEEc
Q 038990 263 ILHVKVIRAIRLLKMDI----FGASDPYVQLSLSGER--IPAKKTS-VKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDW 335 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~----~g~~dpyv~v~l~~~~--~~~~~T~-~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~ 335 (505)
.|.|+|+++.++++... ...+||||.+.+-|-. ....+|+ +..++-||.|+|+|+|.+..|+-.-|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 79999999997765432 2357999999986532 2245788 677899999999999999999888999999999
Q ss_pred CCCCCCcccEEEEEECccCCCCCee
Q 038990 336 EKVGTHDKLGMQVVPLRSLTPNETK 360 (505)
Q Consensus 336 d~~~~d~~lG~~~i~l~~l~~~~~~ 360 (505)
|..++|||+|+..+|+.+|..|-.+
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRh 721 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRH 721 (746)
T ss_pred CCCCcccccceeeccHHHhhCceee
Confidence 9999999999999999999988544
|
|
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.4e-08 Score=102.77 Aligned_cols=108 Identities=19% Similarity=0.247 Sum_probs=85.2
Q ss_pred EEEEEeeecCCCC--------CCCCCCEEEEEEcCe-----EEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEc
Q 038990 388 GKATEYGAKDLEG--------KHHNNPYAVVICRGE-----QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSK 454 (505)
Q Consensus 388 a~v~v~~a~~L~~--------~~~~dpyv~v~~~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~ 454 (505)
.+|+|+.|++++. ...+||||+|.+.|. .++|++..++.||+|||+|+|.+..+++ ..|.|+|+|+
T Consensus 411 L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PEL-AlLrf~V~D~ 489 (537)
T PLN02223 411 LKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDL-ALISFEVYDY 489 (537)
T ss_pred EEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCc-eEEEEEEEec
Confidence 4889999998641 125799999999652 3578777789999999999999998754 4799999999
Q ss_pred cCCccCCCCCccEEEEEeccccccCCEEeEEEEeCCCC-----CceEEEEEEE
Q 038990 455 RRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSK-----NGAVQVEIKW 502 (505)
Q Consensus 455 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~~ 502 (505)
+. ...++++|+..+|++.+..+- +..+|.+.. .-.|-++++|
T Consensus 490 D~---~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 490 EV---STADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred CC---CCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCCceEEEEEEe
Confidence 84 567899999999999998765 667886542 4566666665
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-08 Score=107.02 Aligned_cols=99 Identities=21% Similarity=0.352 Sum_probs=80.8
Q ss_pred eEEEEEEEeeccCcc----ccC--CCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEE
Q 038990 261 VGILHVKVIRAIRLL----KMD--IFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHV 332 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~----~~d--~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v 332 (505)
...|.|+|+.+.+++ ... .....||||++.+.+-. ..+++|+++.++.||.|||+|.|.+..++-..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 457999999998753 111 12346999999986421 2346899999999999999999999888878899999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCCe
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNET 359 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~~ 359 (505)
||+|..+.|+++|++.+|+..|..|-.
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR 557 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGIR 557 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCccc
Confidence 999988889999999999999998843
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-08 Score=80.90 Aligned_cols=86 Identities=20% Similarity=0.353 Sum_probs=69.7
Q ss_pred EEEEEeeccCccccC---CCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCC
Q 038990 264 LHVKVIRAIRLLKMD---IFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGT 340 (505)
Q Consensus 264 L~V~v~~a~~L~~~d---~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~ 340 (505)
|.|+|.+|+|+.-.+ ..+.+||||.+.+++... .||+. +.||.|||+|.|.+. ....+.+.|||... ..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~k--aRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~-~~ 72 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVER--ARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGG-DQ 72 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEE--EeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCC-Ce
Confidence 578999999998877 567899999999998752 46765 589999999999994 46789999999853 45
Q ss_pred CcccEEEEEECccCCCC
Q 038990 341 HDKLGMQVVPLRSLTPN 357 (505)
Q Consensus 341 d~~lG~~~i~l~~l~~~ 357 (505)
.-.+|..-+.++++.+.
T Consensus 73 ~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 73 PVPVGLLWLRLSDIAEE 89 (109)
T ss_pred ecceeeehhhHHHHHHH
Confidence 56788888888777643
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.5e-08 Score=104.13 Aligned_cols=98 Identities=21% Similarity=0.395 Sum_probs=80.2
Q ss_pred EEEEEEEeeccCccc---cC---CCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeE-ceeEEEEeecCCCCEEEEEE
Q 038990 262 GILHVKVIRAIRLLK---MD---IFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEW-NEDFKLTVKDPETQVLQLHV 332 (505)
Q Consensus 262 g~L~V~v~~a~~L~~---~d---~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~w-ne~f~~~v~~~~~~~L~v~v 332 (505)
..|+|+|++|.+|+. .+ .....||||++.+.+- ...+++|++++++.||.| ||+|.|.+..++-.-|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999998731 11 1234799999998643 223468999988999999 99999999988878899999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCCe
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNET 359 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~~ 359 (505)
+|+|..+.|+++|++.+|++.|..+-.
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~GYR 537 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSGVR 537 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCCee
Confidence 999988899999999999999988733
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-07 Score=99.83 Aligned_cols=97 Identities=23% Similarity=0.274 Sum_probs=79.5
Q ss_pred EEEEEeeecCCCC--C-------CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEE
Q 038990 388 GKATEYGAKDLEG--K-------HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKS 453 (505)
Q Consensus 388 a~v~v~~a~~L~~--~-------~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d 453 (505)
..|.|+.|++++. . ...||||++.+.+ .+++|+++.++.||+|||+|+|.+..+++ ..+.|+|+|
T Consensus 472 L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PEL-Allrf~V~D 550 (599)
T PLN02952 472 LKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPEL-ALLRIEVRE 550 (599)
T ss_pred EEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCc-cEEEEEEEe
Confidence 4789999988642 1 1359999999865 34699999999999999999999988743 479999999
Q ss_pred ccCCccCCCCCccEEEEEeccccccCCEEeEEEEeCCC
Q 038990 454 KRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINS 491 (505)
Q Consensus 454 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 491 (505)
++. .+.++++|+..++++.|..+. +|.+|.+.
T Consensus 551 ~D~---~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~ 582 (599)
T PLN02952 551 YDM---SEKDDFGGQTCLPVSELRPGI---RSVPLHDK 582 (599)
T ss_pred cCC---CCCCCeEEEEEcchhHhcCCc---eeEeCcCC
Confidence 874 567899999999999998876 68899754
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.1e-08 Score=103.82 Aligned_cols=105 Identities=21% Similarity=0.353 Sum_probs=88.6
Q ss_pred eEEEEEEEeeccCccccC------------------CCCCCCcEEEEEECCeecceeeeeeeCCC-CCCeEceeEEEEee
Q 038990 261 VGILHVKVIRAIRLLKMD------------------IFGASDPYVQLSLSGERIPAKKTSVKMKT-LNPEWNEDFKLTVK 321 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d------------------~~g~~dpyv~v~l~~~~~~~~~T~~~~~t-~nP~wne~f~~~v~ 321 (505)
.|.|.|+|.+|++|+..+ ..+.+|||+.+.+++.++ .||+++.+. .||.|+|+|.+.+.
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v--~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARV--GRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEE--EEEeecCCCCCCCccccceEEeec
Confidence 589999999999998631 124679999999998775 599999885 59999999999997
Q ss_pred cCCCCEEEEEEEEcCCCCCCcccEEEEEECccCCCCCeeEEEEecccc
Q 038990 322 DPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKN 369 (505)
Q Consensus 322 ~~~~~~L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~ 369 (505)
... ..+.|.|.|.|.++. .+||.+.+|..++..++..+.|+++...
T Consensus 85 h~~-~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~ 130 (808)
T PLN02270 85 HMA-SNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDN 130 (808)
T ss_pred cCc-ceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCC
Confidence 654 679999999998765 5999999999999999888888887653
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.7e-08 Score=100.81 Aligned_cols=95 Identities=28% Similarity=0.470 Sum_probs=81.4
Q ss_pred EEEEEEEeeccCccccCCCCCCCcEEEEEECCeec---ceeeeeeeCCCCCCeEc-eeEEEEeecCCCCEEEEEEEEcCC
Q 038990 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERI---PAKKTSVKMKTLNPEWN-EDFKLTVKDPETQVLQLHVYDWEK 337 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~---~~~~T~~~~~t~nP~wn-e~f~~~v~~~~~~~L~v~v~d~d~ 337 (505)
-.|.|.|+.|++|+... .|-..|||.+.+-|... ..++|.+..|++||+|| |+|.|.+.+|+-.-|+|.|||.|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 57889999999999554 34567999999865332 23577788999999999 999999999998999999999999
Q ss_pred CCCCcccEEEEEECccCCCC
Q 038990 338 VGTHDKLGMQVVPLRSLTPN 357 (505)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~ 357 (505)
++...|||++.+|+..+..+
T Consensus 1144 fs~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred cCCcceeeeeecchhhhhcc
Confidence 99888999999999998876
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.5e-07 Score=96.16 Aligned_cols=173 Identities=21% Similarity=0.299 Sum_probs=119.5
Q ss_pred eeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCC----CCCcccEEEEEECccCCCCCeeEEEEeccccCCCCC
Q 038990 299 KKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKV----GTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNPND 374 (505)
Q Consensus 299 ~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~----~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~ 374 (505)
.+|.++.+.+||.|.+.|.+.......|.++++++|.+.. ...+++|++...+.++........-+.+..... ..
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~-~~ 121 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKN-AG 121 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCcc-CC
Confidence 4899999999999999999888877789999999998743 467899999999998886544322222211100 00
Q ss_pred ccccccccccc-----ceEEEEEeeecCCCCC---CCCCCEEEEEEc--Ce----EEEeecccCCCCCccCceEEEEeeC
Q 038990 375 PQDKKFERKES-----EVGKATEYGAKDLEGK---HHNNPYAVVICR--GE----QKKTKMIKKCRDPIWNEEFQFDFEE 440 (505)
Q Consensus 375 ~~~~~~~g~~~-----~~a~v~v~~a~~L~~~---~~~dpyv~v~~~--~~----~~kT~v~~~t~nP~wne~f~f~v~~ 440 (505)
........+ +....-..+|++|..+ +.+|||..++-. .. .++|.+++++.||.|.+ |......
T Consensus 122 --~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~ 198 (529)
T KOG1327|consen 122 --SGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQS 198 (529)
T ss_pred --cccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhh
Confidence 000000011 1112334457788764 589999999853 21 24999999999999998 4444332
Q ss_pred CC---CCCeEEEEEEEccCCccCCCCCccEEEEEecccccc
Q 038990 441 AP---LKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLH 478 (505)
Q Consensus 441 ~~---~~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~ 478 (505)
.+ .+..+.+.+||++. .++++++|.+..+++++..
T Consensus 199 l~~~~~~~~~~i~~~d~~~---~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 199 LCSKDGNRPIQIECYDYDS---NGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred hcccCCCCceEEEEeccCC---CCCcCceeEecccHHHhcc
Confidence 21 23578999999985 5677999999999999864
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.8e-09 Score=109.61 Aligned_cols=87 Identities=24% Similarity=0.381 Sum_probs=71.3
Q ss_pred EEEEeeecCC---CCCCCCCCEEEEEEcCeE-------EEeecccCCCCCccCceEEEEeeCC-CC--CCeEEEEEEEcc
Q 038990 389 KATEYGAKDL---EGKHHNNPYAVVICRGEQ-------KKTKMIKKCRDPIWNEEFQFDFEEA-PL--KEKIHIEVKSKR 455 (505)
Q Consensus 389 ~v~v~~a~~L---~~~~~~dpyv~v~~~~~~-------~kT~v~~~t~nP~wne~f~f~v~~~-~~--~~~l~i~V~d~~ 455 (505)
.|.|+.|+++ ..+|.+||||.+.+..+. ++|+|+++|+||+|+|+|+|.|+.. +. ...+.++|+|++
T Consensus 950 ~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD 1029 (1103)
T KOG1328|consen 950 VVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHD 1029 (1103)
T ss_pred hhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEeeccc
Confidence 3555667775 346899999999998753 5999999999999999999999643 33 237999999998
Q ss_pred CCccCCCCCccEEEEEecccccc
Q 038990 456 RGLRLRSKESLGYVDINLHDVLH 478 (505)
Q Consensus 456 ~~~~~~~d~~lG~~~i~L~~l~~ 478 (505)
- ...++|-|..-+.|.++..
T Consensus 1030 ~---L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1030 Y---LRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred e---ecccccchHHHHhhCCCCC
Confidence 4 7889999999999988765
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.6e-07 Score=95.85 Aligned_cols=108 Identities=19% Similarity=0.246 Sum_probs=84.2
Q ss_pred EEEEEeeecCCC----C-----CCCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEE
Q 038990 388 GKATEYGAKDLE----G-----KHHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKS 453 (505)
Q Consensus 388 a~v~v~~a~~L~----~-----~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d 453 (505)
..|+|+.+++++ . ....||||++.+.+ .+++|+++.++.||+|||.|+|.+..+++ ..+.|.|+|
T Consensus 454 L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeL-AllRf~V~d 532 (581)
T PLN02222 454 LRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPEL-ALLRLEVHE 532 (581)
T ss_pred EEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCce-eEEEEEEEE
Confidence 378889887642 1 12579999999964 34699999999999999999999988754 489999999
Q ss_pred ccCCccCCCCCccEEEEEeccccccCCEEeEEEEeCCCC-----CceEEEEEEE
Q 038990 454 KRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSK-----NGAVQVEIKW 502 (505)
Q Consensus 454 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~~ 502 (505)
++. ...++++|+..++++.|..+- +..+|.+.. ...+-+.++|
T Consensus 533 ~D~---~~~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 533 YDM---SEKDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred CCC---CCCCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCCCeeEEEEEEe
Confidence 874 567899999999999998765 566776543 3466666665
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.2e-07 Score=74.45 Aligned_cols=81 Identities=21% Similarity=0.354 Sum_probs=66.7
Q ss_pred EEEEeeecCCCC------CCCCCCEEEEEEcCe-EEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCC
Q 038990 389 KATEYGAKDLEG------KHHNNPYAVVICRGE-QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLR 461 (505)
Q Consensus 389 ~v~v~~a~~L~~------~~~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~ 461 (505)
+|+|+.|+|+.. .+.++|||.+.+++. +.+|++ +.||.|||.|.|.+.+ ...+.+.|||+. ..
T Consensus 2 ~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk---~nEiel~VyDk~----~~ 71 (109)
T cd08689 2 TITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK---NNEEEVIVYDKG----GD 71 (109)
T ss_pred EEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC---CcEEEEEEEeCC----CC
Confidence 588999999953 357899999999887 458887 5899999999999943 358999999986 33
Q ss_pred CCCccEEEEEeccccccC
Q 038990 462 SKESLGYVDINLHDVLHN 479 (505)
Q Consensus 462 ~d~~lG~~~i~L~~l~~~ 479 (505)
..--+|-..+.++++.+.
T Consensus 72 ~~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 72 QPVPVGLLWLRLSDIAEE 89 (109)
T ss_pred eecceeeehhhHHHHHHH
Confidence 456899999999998763
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.2e-07 Score=96.34 Aligned_cols=108 Identities=19% Similarity=0.224 Sum_probs=84.8
Q ss_pred EEEEEeeecCCCC--C-------CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEE
Q 038990 388 GKATEYGAKDLEG--K-------HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKS 453 (505)
Q Consensus 388 a~v~v~~a~~L~~--~-------~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d 453 (505)
..|.|+.+++++. . ...||||++.+.+ .+++|++..++.||+|||+|+|.+..+++ ..|.|+|+|
T Consensus 471 L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPEL-AllRf~V~d 549 (598)
T PLN02230 471 LKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPEL-ALLRVEVHE 549 (598)
T ss_pred EEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCce-eEEEEEEEE
Confidence 4789999997631 1 2479999999965 23588988899999999999999988754 489999999
Q ss_pred ccCCccCCCCCccEEEEEeccccccCCEEeEEEEeCCCC-----CceEEEEEEE
Q 038990 454 KRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSK-----NGAVQVEIKW 502 (505)
Q Consensus 454 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~~ 502 (505)
++. ..+++++|+..++++.|..+- +..+|.+.. .-.|-++++|
T Consensus 550 ~d~---~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 550 HDI---NEKDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred CCC---CCCCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCCCCeeEEEEEe
Confidence 984 568999999999999998765 456776543 3466666665
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.6e-07 Score=93.69 Aligned_cols=110 Identities=20% Similarity=0.305 Sum_probs=86.5
Q ss_pred EEEEEeeecCCCCC-------CCCCCEEEEEEcCe-----EEEeec-ccCCCCCccCceEEEEeeCCCCCCeEEEEEEEc
Q 038990 388 GKATEYGAKDLEGK-------HHNNPYAVVICRGE-----QKKTKM-IKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSK 454 (505)
Q Consensus 388 a~v~v~~a~~L~~~-------~~~dpyv~v~~~~~-----~~kT~v-~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~ 454 (505)
..|.|+.+++.... ..+||||.+.+.|- .++|++ ..++-||.|+|+|+|.+..|++ ..|.+.|+|+
T Consensus 618 L~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL-AliRF~V~d~ 696 (746)
T KOG0169|consen 618 LKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL-ALIRFEVHDY 696 (746)
T ss_pred eEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce-eEEEEEEEec
Confidence 58999999966431 36899999998764 358994 4568999999999999999865 4899999999
Q ss_pred cCCccCCCCCccEEEEEeccccccCCEEeEEEEeCCC-----CCceEEEEEEEEe
Q 038990 455 RRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINS-----KNGAVQVEIKWKA 504 (505)
Q Consensus 455 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~~~~ 504 (505)
+. .++|+|+|+.++|++.|..+- +-.+|.+. ..-.|-+++.|.+
T Consensus 697 d~---~~~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 697 DY---IGKDDFIGQTTLPVSELRQGY---RHVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred CC---CCcccccceeeccHHHhhCce---eeeeecCCCCccccceeEEEEEEEec
Confidence 85 677999999999999998765 45666653 2466777777754
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-06 Score=91.98 Aligned_cols=110 Identities=16% Similarity=0.206 Sum_probs=85.7
Q ss_pred EEEEEeeecCCC----C-C----CCCCCEEEEEEcC-----eEEEeecccCCCCCcc-CceEEEEeeCCCCCCeEEEEEE
Q 038990 388 GKATEYGAKDLE----G-K----HHNNPYAVVICRG-----EQKKTKMIKKCRDPIW-NEEFQFDFEEAPLKEKIHIEVK 452 (505)
Q Consensus 388 a~v~v~~a~~L~----~-~----~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~w-ne~f~f~v~~~~~~~~l~i~V~ 452 (505)
.+|+|+.|++|+ . . ...||||++.+.+ .+++|+++.++.||+| ||.|+|.+..+++ ..+.|.|+
T Consensus 433 L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pEL-A~lRf~V~ 511 (567)
T PLN02228 433 LKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPEL-ALLWFKVQ 511 (567)
T ss_pred EEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCce-eEEEEEEE
Confidence 378999999862 1 1 2479999999854 2359999988899999 9999999988754 38999999
Q ss_pred EccCCccCCCCCccEEEEEeccccccCCEEeEEEEeCCCC-----CceEEEEEEEEe
Q 038990 453 SKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSK-----NGAVQVEIKWKA 504 (505)
Q Consensus 453 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~~~~ 504 (505)
|++. .+.++++|+..++++.|..+- +..+|.+.. ...|-+++.+.+
T Consensus 512 D~d~---~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 512 DYDN---DTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred eCCC---CCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCCCeEEEEEEEEcC
Confidence 9874 568899999999999997765 566776543 456777776654
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.5e-07 Score=91.51 Aligned_cols=110 Identities=17% Similarity=0.375 Sum_probs=92.7
Q ss_pred EEEEeeecCCCCC----CCCCCEEEEEEcCeEEEeecccCCCCCccC-ceEEEEeeCCCCCC-eEEEEEEEccCCccCCC
Q 038990 389 KATEYGAKDLEGK----HHNNPYAVVICRGEQKKTKMIKKCRDPIWN-EEFQFDFEEAPLKE-KIHIEVKSKRRGLRLRS 462 (505)
Q Consensus 389 ~v~v~~a~~L~~~----~~~dpyv~v~~~~~~~kT~v~~~t~nP~wn-e~f~f~v~~~~~~~-~l~i~V~d~~~~~~~~~ 462 (505)
.|.|..|++|+.. ...|.||++.+.+..+||.+-.+++||.|| +=|.|.+.+.++++ .|.|.+.|+++ .+.
T Consensus 6 ~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt---ysa 82 (1169)
T KOG1031|consen 6 GVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT---YSA 82 (1169)
T ss_pred eeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc---ccc
Confidence 4788899999864 478999999999999999999999999999 68999998876654 89999999996 577
Q ss_pred CCccEEEEEeccccccC----------CEEeEEEEeCCC---CCceEEEEEE
Q 038990 463 KESLGYVDINLHDVLHN----------GRLKEKYHLINS---KNGAVQVEIK 501 (505)
Q Consensus 463 d~~lG~~~i~L~~l~~~----------~~~~~~~~L~~~---~~G~i~l~~~ 501 (505)
++-||.+.|+++.|.-. ..+..||+.-+. -+|+|.+-++
T Consensus 83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivk 134 (1169)
T KOG1031|consen 83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVK 134 (1169)
T ss_pred ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEE
Confidence 89999999999887642 256899999875 3789887664
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.7e-07 Score=93.12 Aligned_cols=99 Identities=19% Similarity=0.256 Sum_probs=80.4
Q ss_pred EEEEeeecCCCCC--CCCCCEEEEEEcC------eEEEeecccCCCCCccC-ceEEEEeeCCCCCCeEEEEEEEccCCcc
Q 038990 389 KATEYGAKDLEGK--HHNNPYAVVICRG------EQKKTKMIKKCRDPIWN-EEFQFDFEEAPLKEKIHIEVKSKRRGLR 459 (505)
Q Consensus 389 ~v~v~~a~~L~~~--~~~dpyv~v~~~~------~~~kT~v~~~t~nP~wn-e~f~f~v~~~~~~~~l~i~V~d~~~~~~ 459 (505)
.|.|+.|++|+.. +...|||++.+-+ +.++|.++.+..||+|| |.|+|.|.+|.. .-|.+.|++.+.
T Consensus 1068 sv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~-A~lRF~V~eeDm--- 1143 (1267)
T KOG1264|consen 1068 SVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEF-AFLRFVVYEEDM--- 1143 (1267)
T ss_pred EEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCce-EEEEEEEecccc---
Confidence 8999999999864 4677999999854 23466777789999999 999999999854 479999999984
Q ss_pred CCCCCccEEEEEeccccccCCEEeEEEEeCCCCCc
Q 038990 460 LRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNG 494 (505)
Q Consensus 460 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G 494 (505)
++...+||+++.|+..+..+- +..+|+++-+.
T Consensus 1144 fs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySE 1175 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSE 1175 (1267)
T ss_pred cCCcceeeeeecchhhhhccc---eeeecccCchh
Confidence 778889999999999887653 56777765443
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.6e-06 Score=93.00 Aligned_cols=90 Identities=21% Similarity=0.364 Sum_probs=75.6
Q ss_pred CCCEEEEEEcCeEE-EeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCccEEEEEeccccccCCE-
Q 038990 404 NNPYAVVICRGEQK-KTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGR- 481 (505)
Q Consensus 404 ~dpyv~v~~~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~- 481 (505)
.+|||.+.+++.+. +| .+..||+|+|+|...|... .+..+.|+|.|. ..+||.+.++..+++.++.
T Consensus 36 ~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~-~~~~~~f~vk~~--------~~~ig~~~~p~~~~~~g~~~ 103 (758)
T PLN02352 36 KATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHP-LDSTITITLKTK--------CSILGRFHIQAHQIVTEASF 103 (758)
T ss_pred CCceEEEEeCCcEEecC---CCCCCCccccceeEEeeee-cCCcEEEEEecC--------CeEEEEEEEEHHHhhCCCcc
Confidence 39999999988765 77 6667999999999999875 334799999874 3799999999999999865
Q ss_pred EeEEEEeCCCC----C-ceEEEEEEEEeC
Q 038990 482 LKEKYHLINSK----N-GAVQVEIKWKAI 505 (505)
Q Consensus 482 ~~~~~~L~~~~----~-G~i~l~~~~~~~ 505 (505)
+++||++.+.. . .+|+++++|.|+
T Consensus 104 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 132 (758)
T PLN02352 104 INGFFPLIMENGKPNPELKLRFMLWFRPA 132 (758)
T ss_pred cceEEEcccCCCCCCCCCEEEEEEEEEEh
Confidence 89999998642 3 599999999985
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.4e-07 Score=91.54 Aligned_cols=92 Identities=32% Similarity=0.513 Sum_probs=80.2
Q ss_pred EEEEEEEeeccCccccCCC-CCCCcEEEEEECCeecceeeeeeeCCCCCCeEc-eeEEEEeecC--CCCEEEEEEEEcCC
Q 038990 262 GILHVKVIRAIRLLKMDIF-GASDPYVQLSLSGERIPAKKTSVKMKTLNPEWN-EDFKLTVKDP--ETQVLQLHVYDWEK 337 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wn-e~f~~~v~~~--~~~~L~v~v~d~d~ 337 (505)
|.|.|++..|++|+-+|.. ...|.||.+.++... ++|.+..+++||.|| +.|.|.+.+. ....|.+++.|+|.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t---~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTT---FKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccc---eehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 7789999999999999864 456999999999765 589999999999999 6788998754 46789999999999
Q ss_pred CCCCcccEEEEEECccCCC
Q 038990 338 VGTHDKLGMQVVPLRSLTP 356 (505)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~ 356 (505)
.+.+|-||.+.++++.|.-
T Consensus 80 ysandaigkv~i~idpl~~ 98 (1169)
T KOG1031|consen 80 YSANDAIGKVNIDIDPLCL 98 (1169)
T ss_pred cccccccceeeeccChHHH
Confidence 9999999999999987653
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.3e-07 Score=99.26 Aligned_cols=107 Identities=25% Similarity=0.211 Sum_probs=87.8
Q ss_pred CeEEEEEEEeeccCccccCCCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEE---eecCCCCEEEEEEEE
Q 038990 260 PVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLT---VKDPETQVLQLHVYD 334 (505)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~---v~~~~~~~L~v~v~d 334 (505)
..|.|.|-|..|++|+--..+..+||||+.++.+.. ..++||+++++|.||+|||+.... ........|.++||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 368999999999999665545678999999997653 345799999999999999987765 222346789999999
Q ss_pred cCCCCCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 335 WEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 335 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
.+....+.++|.+.++|.++.......-|++|
T Consensus 1602 ~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred ccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 99888999999999999998877665566665
|
|
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.3e-06 Score=80.40 Aligned_cols=96 Identities=33% Similarity=0.379 Sum_probs=79.9
Q ss_pred CCcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeec--CCCCEEEEE
Q 038990 256 AIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKD--PETQVLQLH 331 (505)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~--~~~~~L~v~ 331 (505)
++.....-+.|++++|..|..+|.+|.+||||+.++.+.. .-+++|.+.+++.||.||+.|.+.+.. .....+.+.
T Consensus 227 ~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~ls 306 (362)
T KOG1013|consen 227 AYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALS 306 (362)
T ss_pred ccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEe
Confidence 4556778899999999999999999999999999987643 224689999999999999999998853 236789999
Q ss_pred EEEcCCCCCCcccEEEEEEC
Q 038990 332 VYDWEKVGTHDKLGMQVVPL 351 (505)
Q Consensus 332 v~d~d~~~~d~~lG~~~i~l 351 (505)
+||++..+..+++|-+....
T Consensus 307 vgd~~~G~s~d~~GG~~~g~ 326 (362)
T KOG1013|consen 307 VGDYDIGKSNDSIGGSMLGG 326 (362)
T ss_pred ecccCCCcCccCCCcccccc
Confidence 99999877889998866543
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.04 E-value=4e-06 Score=91.17 Aligned_cols=101 Identities=27% Similarity=0.335 Sum_probs=81.3
Q ss_pred EEEEEeeecCCC---CCCCCCCEEEEEEcCe-----EEEeecccCCCCCccCceEEEE-eeCCCC-CCeEEEEEEEccCC
Q 038990 388 GKATEYGAKDLE---GKHHNNPYAVVICRGE-----QKKTKMIKKCRDPIWNEEFQFD-FEEAPL-KEKIHIEVKSKRRG 457 (505)
Q Consensus 388 a~v~v~~a~~L~---~~~~~dpyv~v~~~~~-----~~kT~v~~~t~nP~wne~f~f~-v~~~~~-~~~l~i~V~d~~~~ 457 (505)
.+|.|+-|++|+ ....+||||+.|+... ++||+++++|.||.|||...+. .+...+ ++.|.++||....
T Consensus 1526 LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~- 1604 (1639)
T KOG0905|consen 1526 LTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGG- 1604 (1639)
T ss_pred EEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccc-
Confidence 377888899984 3348999999999764 3599999999999999998887 333222 3589999999874
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEeCCC
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHLINS 491 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 491 (505)
...+.++|.+.|+|.++...++..+||.|...
T Consensus 1605 --~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1605 --LLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred --eeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence 66789999999999998887776799999653
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.1e-05 Score=84.54 Aligned_cols=100 Identities=16% Similarity=0.306 Sum_probs=77.2
Q ss_pred CeEEEEEEEeeccCcccc----CCC-CCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEE
Q 038990 260 PVGILHVKVIRAIRLLKM----DIF-GASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYD 334 (505)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~----d~~-g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d 334 (505)
-.|.|.++|.+|+-+... +.. ...|||+.+.+++.++ .|| .+..||.|+|+|.+.+.......+.|+|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v--~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~ 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKV--AKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEE--ecC---CCCCCCccccceeEEeeeecCCcEEEEEec
Confidence 469999999999843222 111 1239999999998765 467 556699999999999987654579999988
Q ss_pred cCCCCCCcccEEEEEECccCCCCCe-eEEEEecccc
Q 038990 335 WEKVGTHDKLGMQVVPLRSLTPNET-KELTLDLVKN 369 (505)
Q Consensus 335 ~d~~~~d~~lG~~~i~l~~l~~~~~-~~~~l~l~~~ 369 (505)
.-.+||.+.+|..++..++. .+.|++++..
T Consensus 83 -----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~ 113 (758)
T PLN02352 83 -----KCSILGRFHIQAHQIVTEASFINGFFPLIME 113 (758)
T ss_pred -----CCeEEEEEEEEHHHhhCCCcccceEEEcccC
Confidence 25799999999999998865 7788887643
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.3e-05 Score=66.39 Aligned_cols=86 Identities=24% Similarity=0.351 Sum_probs=66.5
Q ss_pred CCCCEEEEEEc----CeEEEeecccCCCCCccCceEEEEee--------CC-C----C-CCeEEEEEEEccCCcc-----
Q 038990 403 HNNPYAVVICR----GEQKKTKMIKKCRDPIWNEEFQFDFE--------EA-P----L-KEKIHIEVKSKRRGLR----- 459 (505)
Q Consensus 403 ~~dpyv~v~~~----~~~~kT~v~~~t~nP~wne~f~f~v~--------~~-~----~-~~~l~i~V~d~~~~~~----- 459 (505)
--|+|+++.+. ++.++|+++-++..|.|+.+++|.|. .. . + ...+.++||+++.+..
T Consensus 32 GVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~ 111 (143)
T cd08683 32 GVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIK 111 (143)
T ss_pred ccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceec
Confidence 46899999863 35579999999999999999999997 11 0 1 2378999999764311
Q ss_pred --CCCCCccEEEEEeccccccC-CEEeEEEEe
Q 038990 460 --LRSKESLGYVDINLHDVLHN-GRLKEKYHL 488 (505)
Q Consensus 460 --~~~d~~lG~~~i~L~~l~~~-~~~~~~~~L 488 (505)
..+|-.||.+.||+.+|+.+ ..+.+||++
T Consensus 112 ~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 112 IETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred cCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 23566999999999999985 467999975
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.5e-06 Score=63.50 Aligned_cols=91 Identities=20% Similarity=0.222 Sum_probs=66.3
Q ss_pred EEEEeeccCccccCCCC-CCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeec--CCCCEEEEEEEEcCCCCCC
Q 038990 265 HVKVIRAIRLLKMDIFG-ASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKD--PETQVLQLHVYDWEKVGTH 341 (505)
Q Consensus 265 ~V~v~~a~~L~~~d~~g-~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~--~~~~~L~v~v~d~d~~~~d 341 (505)
-+++++|++|.-....| .+.-|++--+.-.+-...||+++++..||.|+|+|.|.+.. ...-.|-+.||. ...+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 47899999997655333 23446653332112223689999999999999999998863 335578889988 46788
Q ss_pred cccEEEEEECccCCCC
Q 038990 342 DKLGMQVVPLRSLTPN 357 (505)
Q Consensus 342 ~~lG~~~i~l~~l~~~ 357 (505)
+.||.|.+.++++-..
T Consensus 80 e~iG~~sL~l~s~gee 95 (103)
T cd08684 80 RTIGECSLSLRTLSTQ 95 (103)
T ss_pred ceeeEEEeecccCCHH
Confidence 9999999999988765
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.1e-05 Score=61.95 Aligned_cols=92 Identities=16% Similarity=0.202 Sum_probs=67.9
Q ss_pred EEEeeecCCCC--C--CCCCCEEEEEEc--C-eEEEeecccCCCCCccCceEEEEeeCCCCCC-eEEEEEEEccCCccCC
Q 038990 390 ATEYGAKDLEG--K--HHNNPYAVVICR--G-EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKE-KIHIEVKSKRRGLRLR 461 (505)
Q Consensus 390 v~v~~a~~L~~--~--~~~dpyv~v~~~--~-~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~-~l~i~V~d~~~~~~~~ 461 (505)
+++.+|+||.- . .++.-|++--+. . ...||.+...+.||+|+|+|.|.+....+.+ .|.++|+.. ..
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~-----~~ 77 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ-----TP 77 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc-----CC
Confidence 67889999842 2 245556665442 2 2349999999999999999999997665555 789999884 56
Q ss_pred CCCccEEEEEeccccccCCEEeEEEE
Q 038990 462 SKESLGYVDINLHDVLHNGRLKEKYH 487 (505)
Q Consensus 462 ~d~~lG~~~i~L~~l~~~~~~~~~~~ 487 (505)
+++.+|.++++|+++-..+ ..+|.+
T Consensus 78 RKe~iG~~sL~l~s~geeE-~~HW~e 102 (103)
T cd08684 78 RKRTIGECSLSLRTLSTQE-TDHWLE 102 (103)
T ss_pred ccceeeEEEeecccCCHHH-hhhhhc
Confidence 8899999999998875533 356643
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.4e-05 Score=82.35 Aligned_cols=91 Identities=18% Similarity=0.304 Sum_probs=75.1
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEE-EECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEc
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQL-SLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDW 335 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v-~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~ 335 (505)
.+.-.|+..+++++|+ ++ ..|||..+ ++|.+. +||.+.++|.||+||+...|.+...+....++.|||.
T Consensus 49 ~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~---f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (644)
T PLN02964 49 AEDFSGIALLTLVGAE----MK---FKDKWLACVSFGEQT---FRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFET 118 (644)
T ss_pred cccccCeEEEEeehhh----hc---cCCcEEEEEEeccee---eeeccccccCCcccchhhceEeccCCcceEEEEEEec
Confidence 4556899999999997 33 35887664 566544 6999999999999999999999876666779999999
Q ss_pred CCCCCCcccEEEEEECccCCCC
Q 038990 336 EKVGTHDKLGMQVVPLRSLTPN 357 (505)
Q Consensus 336 d~~~~d~~lG~~~i~l~~l~~~ 357 (505)
+.+++++.+|.|++++.++...
T Consensus 119 ~~~s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 119 NRLSKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred CCCCHHHhhhheeecHhhccHH
Confidence 9999999999999988766544
|
|
| >KOG3532 consensus Predicted protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0003 Score=72.91 Aligned_cols=227 Identities=15% Similarity=0.237 Sum_probs=152.1
Q ss_pred CCCCceeCCCC-------CchHHHHHHHHhhCh------hhHHHHHHHHHHHHHHHHHhccCcceeeEEEEeEEecCCCC
Q 038990 59 EIPLWVKHPDY-------DRIDWLNKFVSDLWP------YLDKAICSTARSNLEPIFAEYIGKYCIRSVDFKTLTLGTLP 125 (505)
Q Consensus 59 ~~p~w~~~~d~-------E~~~WlN~~l~~~Wp------~~~~~~~~~i~~~~~~~l~~~~p~~~i~~i~~~~~~lG~~~ 125 (505)
+.|.|...... ..|-.+|.+++.++. .++.++.+.+.+.++.++.....+-.++.+.+.++-+|.+.
T Consensus 81 ~~~t~~~~~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~~f 160 (1051)
T KOG3532|consen 81 ELRTFLKSGEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGTKF 160 (1051)
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhcccc
Confidence 68889765432 245667777877775 35556666666677777765443334899999999999999
Q ss_pred CeEeEEEEEEcC------------C-------------ceEEEeeeEEEeCCCcEEEEEEE-eceEEEEEEEEEEEEEEE
Q 038990 126 PIIHGIKVCETN------------E-------------NELILEPALRWAGNPNITLALKF-FSLQITVQLLDVQIRAAP 179 (505)
Q Consensus 126 P~i~~v~~~~~~------------~-------------~~~~ld~~~~~~~~~~i~l~~~~-~~~~~~v~v~~l~~~g~~ 179 (505)
|.+++.+++.-+ + ..+.+=.++.|.|+..-++.+.. .+.+..+.+.-.+++|.+
T Consensus 161 ~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l~Gm~ 240 (1051)
T KOG3532|consen 161 MTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKLTGMV 240 (1051)
T ss_pred ccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEeccce
Confidence 999999998611 0 11334468889888777776655 233344445566999999
Q ss_pred EEEeeecCCCCCccceEEEEecCCceEEEEeeEe-ccccccchhhHHHHHHHHHHHHHhhccCCCCcc--cccc-----c
Q 038990 180 RIVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLV-GGDMMAIPGLYQFIQETIRNQISALYLWPQPLE--IPIL-----D 251 (505)
Q Consensus 180 rv~l~pl~~~~P~~~~~~~sf~~~P~~d~~~~~~-g~~i~~iP~l~~~i~~~i~~~l~~~~v~P~~~~--~~l~-----~ 251 (505)
|+.+. .-....++++|...|.+.-+.+.- -++-|. --+.+.|...++..+.+...||++-- .|.. +
T Consensus 241 r~~~~-----r~py~hw~~sf~G~P~~e~di~s~~qg~qLQ-~~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~~~~ 314 (1051)
T KOG3532|consen 241 RVILS-----RQPYHHWTFSFVGQPIFETDINSQIQGHQLQ-RLIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNPIFQ 314 (1051)
T ss_pred eEEEE-----eccceeeeeeeccCchhhhhhHHHHHHHHHH-HHhHHHHHHHHHHHHHhhccCcchhhhccccccCcccc
Confidence 99886 334678999999999876555432 011110 12445677888888899999999632 1221 1
Q ss_pred CCc----CCCcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECC
Q 038990 252 GSL----GAIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSG 293 (505)
Q Consensus 252 ~~~----~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~ 293 (505)
... ...-.+.|.+.|++.++..|... .++..-||.+.+.+
T Consensus 315 a~~~~~s~~~i~~~G~~~V~~lE~srL~~~--~k~~e~Yct~T~e~ 358 (1051)
T KOG3532|consen 315 ASPPINSFTHIKMEGGIEVTVLECSRLKDK--NKNYEVYCTVTIES 358 (1051)
T ss_pred cCcchhhhhheeccCceeEeehhhhhhhcc--CCccceeeeccccC
Confidence 100 01234789999999999888654 47788999988754
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0001 Score=71.72 Aligned_cols=110 Identities=25% Similarity=0.324 Sum_probs=88.5
Q ss_pred CCeEEEEEEEeeccCccccCCCC-CCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEE-E
Q 038990 259 KPVGILHVKVIRAIRLLKMDIFG-ASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVY-D 334 (505)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g-~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~-d 334 (505)
...|.+.|.+++|++|..+.-.+ .++|||+|++.+. ...+.+|+...+|.+|.+.+...|.- .+....|.+.+| |
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~-sp~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQ-SPPGKYLQGTVWGD 344 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhcc-CCCccEEEEEEecc
Confidence 35799999999999998875433 5799999998654 34556899999999998877666655 455778999999 6
Q ss_pred cCCCCCCcccEEEEEECccCCCCC-eeEEEEecccc
Q 038990 335 WEKVGTHDKLGMQVVPLRSLTPNE-TKELTLDLVKN 369 (505)
Q Consensus 335 ~d~~~~d~~lG~~~i~l~~l~~~~-~~~~~l~l~~~ 369 (505)
+.++.++.|+|.+.+-+.+|.... ....|+++...
T Consensus 345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred ccccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 778888899999999999999876 66788887654
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00022 Score=73.30 Aligned_cols=87 Identities=31% Similarity=0.553 Sum_probs=70.4
Q ss_pred eeccCccccCCCCCCCcEEEEEEC---CeecceeeeeeeCCCCCCeEceeEEEEeecC----CCCEEEEEEEEcCCCCCC
Q 038990 269 IRAIRLLKMDIFGASDPYVQLSLS---GERIPAKKTSVKMKTLNPEWNEDFKLTVKDP----ETQVLQLHVYDWEKVGTH 341 (505)
Q Consensus 269 ~~a~~L~~~d~~g~~dpyv~v~l~---~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~----~~~~L~v~v~d~d~~~~d 341 (505)
++|++|.++|..+++|||..++-. +.....++|++.++++||.|.+ |.+..... ....+.+.+||++..+++
T Consensus 143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~ 221 (529)
T KOG1327|consen 143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKH 221 (529)
T ss_pred eeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCc
Confidence 568999999999999999988643 2233457999999999999995 44444322 246788999999999999
Q ss_pred cccEEEEEECccCCC
Q 038990 342 DKLGMQVVPLRSLTP 356 (505)
Q Consensus 342 ~~lG~~~i~l~~l~~ 356 (505)
+++|++..++.++..
T Consensus 222 ~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 222 DLIGKFQTTLSELQE 236 (529)
T ss_pred CceeEecccHHHhcc
Confidence 999999999999875
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00028 Score=69.31 Aligned_cols=113 Identities=18% Similarity=0.232 Sum_probs=88.2
Q ss_pred EEEEeeecCCCC---CCCCCCEEEEEEc-----CeEEEeecccCCCCCccCceEEEEeeCCCC----------CCeEEEE
Q 038990 389 KATEYGAKDLEG---KHHNNPYAVVICR-----GEQKKTKMIKKCRDPIWNEEFQFDFEEAPL----------KEKIHIE 450 (505)
Q Consensus 389 ~v~v~~a~~L~~---~~~~dpyv~v~~~-----~~~~kT~v~~~t~nP~wne~f~f~v~~~~~----------~~~l~i~ 450 (505)
++.|..+++++. ....|.|+++.+. ..+.+|.+++.|.+|.|+|.|..++...+. ...+.|+
T Consensus 370 el~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfe 449 (523)
T KOG3837|consen 370 ELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFE 449 (523)
T ss_pred HHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEE
Confidence 566667777754 2367889988762 123499999999999999999999976311 1258999
Q ss_pred EEEccCCccCCCCCccEEEEEeccccccCCEEeEEEEeCCCC---CceEEEEEEEE
Q 038990 451 VKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSK---NGAVQVEIKWK 503 (505)
Q Consensus 451 V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~---~G~i~l~~~~~ 503 (505)
++++.. .+.+|.++|.+.+.|..|.....+.+.|+|.++. +|++.++++.+
T Consensus 450 ifhkgg--f~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 450 IFHKGG--FNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR 503 (523)
T ss_pred Eeeccc--cccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence 999875 3778999999999999887767788999999863 79999888765
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00064 Score=66.26 Aligned_cols=99 Identities=24% Similarity=0.314 Sum_probs=79.1
Q ss_pred EEEEeeecCCCCC----CCCCCEEEEEEcCe-----EEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCcc
Q 038990 389 KATEYGAKDLEGK----HHNNPYAVVICRGE-----QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLR 459 (505)
Q Consensus 389 ~v~v~~a~~L~~~----~~~dpyv~v~~~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~ 459 (505)
+|.|++|++|-.+ ..++|||+||+... +.+|+...+|.+|-+.+...|.-..+ ...|.+.||..-. .
T Consensus 272 ~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~--~k~Lq~tv~gdyg--R 347 (405)
T KOG2060|consen 272 EVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPP--GKYLQGTVWGDYG--R 347 (405)
T ss_pred eEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCC--ccEEEEEEecccc--c
Confidence 8999999999532 37999999999653 34999999999999988777766543 4689999996543 3
Q ss_pred CCCCCccEEEEEeccccccCC-EEeEEEEeCCC
Q 038990 460 LRSKESLGYVDINLHDVLHNG-RLKEKYHLINS 491 (505)
Q Consensus 460 ~~~d~~lG~~~i~L~~l~~~~-~~~~~~~L~~~ 491 (505)
...+.++|.+.+-+.+|-... ....||+|-+.
T Consensus 348 md~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 348 MDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred cchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 667899999999999998765 67899999764
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00055 Score=56.87 Aligned_cols=93 Identities=25% Similarity=0.389 Sum_probs=68.0
Q ss_pred EEEEEeeccCccccC---------C----CCCCCcEEEEEEC--CeecceeeeeeeCCCCCCeEceeEEEEee-------
Q 038990 264 LHVKVIRAIRLLKMD---------I----FGASDPYVQLSLS--GERIPAKKTSVKMKTLNPEWNEDFKLTVK------- 321 (505)
Q Consensus 264 L~V~v~~a~~L~~~d---------~----~g~~dpyv~v~l~--~~~~~~~~T~~~~~t~nP~wne~f~~~v~------- 321 (505)
|.|.|++|.+|+... . .-.-++||++.+. ++. +.++|+++.++.-|.|+.+++|.+.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~-e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEK-ELRRTRTVARSFCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCC-ceeeccchhhhcCCCccceEEEecccEEEcCC
Confidence 467889999987532 1 1124799999854 322 3468999999999999999999875
Q ss_pred -c-------CCCCEEEEEEEEcCCC----------CCCcccEEEEEECccCCCC
Q 038990 322 -D-------PETQVLQLHVYDWEKV----------GTHDKLGMQVVPLRSLTPN 357 (505)
Q Consensus 322 -~-------~~~~~L~v~v~d~d~~----------~~d~~lG~~~i~l~~l~~~ 357 (505)
+ .+...+.++||+.+.- .+|-.||.+.||+.+|...
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~ 133 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK 133 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc
Confidence 1 1255789999987632 3455899999999988754
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.066 Score=53.23 Aligned_cols=212 Identities=17% Similarity=0.261 Sum_probs=138.7
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeec-------CCCCEEEEEEEEcC
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKD-------PETQVLQLHVYDWE 336 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~-------~~~~~L~v~v~d~d 336 (505)
+.|+|++++|.+... ...-.+..++++... .|..+..+..|.||......+.- .....+++++|..|
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l---~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~ 75 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESL---ETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD 75 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCcee---eecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence 578999999998762 345677888988775 67778889999999888777641 24678999999998
Q ss_pred -CCCCCcccEEEEEECccC---CCC--CeeEEEEeccccC------CCC-----------C-----cc--cc----cccc
Q 038990 337 -KVGTHDKLGMQVVPLRSL---TPN--ETKELTLDLVKNT------NPN-----------D-----PQ--DK----KFER 382 (505)
Q Consensus 337 -~~~~d~~lG~~~i~l~~l---~~~--~~~~~~l~l~~~~------~~~-----------~-----~~--~~----~~~g 382 (505)
..++.+.+|.+.++|+.. ..+ .....|++|+... +|. . .. .. ...+
T Consensus 76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~ 155 (340)
T PF12416_consen 76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQG 155 (340)
T ss_pred CCCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCcccC
Confidence 567889999999999998 444 3445676664320 000 0 00 00 0000
Q ss_pred ---------c---------cc-------------ce--EEEEEeeecCCCCC---------CCCCCEEEEEEcCeEEEee
Q 038990 383 ---------K---------ES-------------EV--GKATEYGAKDLEGK---------HHNNPYAVVICRGEQKKTK 420 (505)
Q Consensus 383 ---------~---------~~-------------~~--a~v~v~~a~~L~~~---------~~~dpyv~v~~~~~~~kT~ 420 (505)
. ++ |+ ..|++..|++|..- +...-|...++-+....|.
T Consensus 156 ~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~ 235 (340)
T PF12416_consen 156 HVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTE 235 (340)
T ss_pred CCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEee
Confidence 0 00 11 26777788887432 1245566667778878888
Q ss_pred cccCCCCCccC-ceEE-EEeeCC--------CCCCeEEEEEEEccCCccCCCCCccEEEEEeccccccCC---------E
Q 038990 421 MIKKCRDPIWN-EEFQ-FDFEEA--------PLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNG---------R 481 (505)
Q Consensus 421 v~~~t~nP~wn-e~f~-f~v~~~--------~~~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~---------~ 481 (505)
.-+...+|.|. |.-. +.+... .....|.|.++.. +..||.+.+++..++... .
T Consensus 236 ~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g--------~~~Lg~~~v~l~~Ll~~~~~~~~~~~~~ 307 (340)
T PF12416_consen 236 PFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG--------NQSLGSTSVPLQPLLPKDSLEFNNSPVI 307 (340)
T ss_pred eccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC--------CcEEEEEEEEhhhccCCCcccccCCcee
Confidence 88888889875 3334 666533 1123567766654 467999999999997432 2
Q ss_pred EeEEEEeC
Q 038990 482 LKEKYHLI 489 (505)
Q Consensus 482 ~~~~~~L~ 489 (505)
.++-|.|.
T Consensus 308 ~eg~F~l~ 315 (340)
T PF12416_consen 308 IEGAFPLN 315 (340)
T ss_pred ecceEeec
Confidence 35567765
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0019 Score=69.17 Aligned_cols=98 Identities=20% Similarity=0.356 Sum_probs=74.8
Q ss_pred ceEEEEEeeecCCCCCCCCCCEEE-EEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCC
Q 038990 386 EVGKATEYGAKDLEGKHHNNPYAV-VICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKE 464 (505)
Q Consensus 386 ~~a~v~v~~a~~L~~~~~~dpyv~-v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~ 464 (505)
.+|.+++.+|+ .+..|+|.. ++++.+..||...++|.||+||+...|.+..... ...++.|||.++ ++.++
T Consensus 54 ~~~~~~~~~~~----~~~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~s~n~ 125 (644)
T PLN02964 54 GIALLTLVGAE----MKFKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGP-HLARISVFETNR---LSKNT 125 (644)
T ss_pred CeEEEEeehhh----hccCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCc-ceEEEEEEecCC---CCHHH
Confidence 35688998887 334688655 5666777899999999999999999999876533 357999999985 88999
Q ss_pred ccEEEEEeccccccCC--EEeEEEEeCCC
Q 038990 465 SLGYVDINLHDVLHNG--RLKEKYHLINS 491 (505)
Q Consensus 465 ~lG~~~i~L~~l~~~~--~~~~~~~L~~~ 491 (505)
++|.+.++|.++...+ .+.+-|.+.+.
T Consensus 126 lv~~~e~~~t~f~~kqi~elkeaF~lfD~ 154 (644)
T PLN02964 126 LVGYCELDLFDFVTQEPESACESFDLLDP 154 (644)
T ss_pred hhhheeecHhhccHHHHHHHHHHHHHHCC
Confidence 9999999998877654 22333555543
|
|
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.012 Score=58.37 Aligned_cols=112 Identities=15% Similarity=0.290 Sum_probs=89.3
Q ss_pred EEEEeeecCCCCCCCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCC------CCeEEEEEEEccCCccCCC
Q 038990 389 KATEYGAKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPL------KEKIHIEVKSKRRGLRLRS 462 (505)
Q Consensus 389 ~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~------~~~l~i~V~d~~~~~~~~~ 462 (505)
.+.|.++++.+....-.-.+..++++....|..+.++..|.||....+.+....+ ...|++++|.-+.. .+.
T Consensus 3 vl~i~egr~F~~~~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~--~~~ 80 (340)
T PF12416_consen 3 VLSILEGRNFPQRPRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS--TGK 80 (340)
T ss_pred EEEEecccCCCCCCCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC--CCc
Confidence 4788999999987677789999999999999999999999999999999864311 23789999887632 467
Q ss_pred CCccEEEEEecccc---ccC--CEEeEEEEeCCC------CCceEEEEEEE
Q 038990 463 KESLGYVDINLHDV---LHN--GRLKEKYHLINS------KNGAVQVEIKW 502 (505)
Q Consensus 463 d~~lG~~~i~L~~l---~~~--~~~~~~~~L~~~------~~G~i~l~~~~ 502 (505)
.+.+|.+.++|... ..+ ....+||+|.+. .+-+|.|.+.-
T Consensus 81 re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~i 131 (340)
T PF12416_consen 81 RESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSI 131 (340)
T ss_pred ceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEE
Confidence 89999999999988 444 355799999986 25677776653
|
|
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.044 Score=48.43 Aligned_cols=90 Identities=24% Similarity=0.302 Sum_probs=61.1
Q ss_pred EEEEEEEeeccCccccCCCCCCCcEEEEEE--CCeecc-eeeeeeeCCCCCCeEceeEEEEee--c-CCCCEEEEEEEEc
Q 038990 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIP-AKKTSVKMKTLNPEWNEDFKLTVK--D-PETQVLQLHVYDW 335 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l--~~~~~~-~~~T~~~~~t~nP~wne~f~~~v~--~-~~~~~L~v~v~d~ 335 (505)
..++|+++++.++.-.+ .+|-||.+.+ ++.... ...|+.+. ..++.|||...|.+. + +....|.|++|+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 35789999999987643 4688888754 444331 12344333 368999999988775 2 3467899999997
Q ss_pred CCCC----CCcccEEEEEECccCC
Q 038990 336 EKVG----THDKLGMQVVPLRSLT 355 (505)
Q Consensus 336 d~~~----~d~~lG~~~i~l~~l~ 355 (505)
.... ....+|.+.++|-+-.
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~~ 107 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDYT 107 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECCC
Confidence 6421 2246999999987633
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.037 Score=48.88 Aligned_cols=86 Identities=20% Similarity=0.300 Sum_probs=60.5
Q ss_pred EEEEeeecCCCCCCCCCCEEEEEE--cCeE----EEeecccCCCCCccCceEEEEee--CCCCCCeEEEEEEEccCCccC
Q 038990 389 KATEYGAKDLEGKHHNNPYAVVIC--RGEQ----KKTKMIKKCRDPIWNEEFQFDFE--EAPLKEKIHIEVKSKRRGLRL 460 (505)
Q Consensus 389 ~v~v~~a~~L~~~~~~dpyv~v~~--~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~i~V~d~~~~~~~ 460 (505)
+|.|+++.+++-...++-||++.+ +++. ..|+.+.. .++.|||-.+|.+. +.+.+..|.|+||+.... ..
T Consensus 11 ~v~i~~~~~~~~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~-~~ 88 (158)
T cd08398 11 RIKILCATYVNVNDIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGR-KG 88 (158)
T ss_pred EEEEEeeccCCCCCcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEecc-cC
Confidence 788999998877666788888855 4433 24554443 78999998888764 445566899999987531 01
Q ss_pred --CCCCccEEEEEecccc
Q 038990 461 --RSKESLGYVDINLHDV 476 (505)
Q Consensus 461 --~~d~~lG~~~i~L~~l 476 (505)
.....+|.++++|.+-
T Consensus 89 ~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 89 AKEEHCPLAWGNINLFDY 106 (158)
T ss_pred CCCceEEEEEEEEEEECC
Confidence 1224699999999873
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.079 Score=47.69 Aligned_cols=92 Identities=18% Similarity=0.258 Sum_probs=62.4
Q ss_pred EEEEEEEeeccCccccCCCCCCCcEEEEE--ECCeecc-eeeeeeeCCCCCCeEceeEEEEee--c-CCCCEEEEEEEEc
Q 038990 262 GILHVKVIRAIRLLKMDIFGASDPYVQLS--LSGERIP-AKKTSVKMKTLNPEWNEDFKLTVK--D-PETQVLQLHVYDW 335 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~--l~~~~~~-~~~T~~~~~t~nP~wne~f~~~v~--~-~~~~~L~v~v~d~ 335 (505)
..++|+++++.++...+ ...+-||.+. .|+.... ...|+.+..+.++.|||.+.|.+. + |....|.|.+|+.
T Consensus 8 ~~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 36789999999998622 3456677764 3554431 235555555567999999998764 2 3467899999997
Q ss_pred CCCC----------------CCcccEEEEEECccCC
Q 038990 336 EKVG----------------THDKLGMQVVPLRSLT 355 (505)
Q Consensus 336 d~~~----------------~d~~lG~~~i~l~~l~ 355 (505)
.... .+..||.+.++|-+-.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~ 121 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYK 121 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEccc
Confidence 5422 2458899998886633
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.072 Score=47.11 Aligned_cols=105 Identities=26% Similarity=0.351 Sum_probs=65.6
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEE--CCeec-ceeeeeeeCCCCCCeEceeEEEEee--c-CCCCEEEEEEEEcC
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERI-PAKKTSVKMKTLNPEWNEDFKLTVK--D-PETQVLQLHVYDWE 336 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l--~~~~~-~~~~T~~~~~t~nP~wne~f~~~v~--~-~~~~~L~v~v~d~d 336 (505)
.++|++....+....+ ....+-||.+.+ ++... ....|.......++.|||...|.+. + +....|.+++|+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 4677788877776521 234566777644 44432 2223433333478999999998764 2 34678999999987
Q ss_pred CCC--CCcccEEEEEECccCCCCC-eeEEEEeccc
Q 038990 337 KVG--THDKLGMQVVPLRSLTPNE-TKELTLDLVK 368 (505)
Q Consensus 337 ~~~--~d~~lG~~~i~l~~l~~~~-~~~~~l~l~~ 368 (505)
..+ ++..+|.+.++|-+-...- ...+.+.++.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~~~~L~~G~~~l~lW~ 122 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDYKGKLRQGMITLNLWP 122 (156)
T ss_pred cCCCCcceEEEEEeEEeEcccCcEecCCEEEeccC
Confidence 544 4679999999997744321 1124455554
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.5 Score=40.88 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=76.2
Q ss_pred EEEEeeecCCCCCCCCCCEEEEEEcCeE---EEeec-ccCCCCCccCceEEEEeeCC---C---CC-CeEEEEEEEccCC
Q 038990 389 KATEYGAKDLEGKHHNNPYAVVICRGEQ---KKTKM-IKKCRDPIWNEEFQFDFEEA---P---LK-EKIHIEVKSKRRG 457 (505)
Q Consensus 389 ~v~v~~a~~L~~~~~~dpyv~v~~~~~~---~kT~v-~~~t~nP~wne~f~f~v~~~---~---~~-~~l~i~V~d~~~~ 457 (505)
.+.|++..+++. ....-|++...+... .+|.. ...+..-.|||.|.+.+.-. . .. ..+.|.|+....
T Consensus 10 ~l~i~~l~~~p~-~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~- 87 (143)
T PF10358_consen 10 DLTIHELENLPS-SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDG- 87 (143)
T ss_pred EEEEEEeECcCC-CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecC-
Confidence 577888888876 334445555555443 23333 23456678999999987621 1 12 268888887731
Q ss_pred ccCCCCCccEEEEEeccccccC--CEEeEEEEeCCC--CCceEEEEEEEEeC
Q 038990 458 LRLRSKESLGYVDINLHDVLHN--GRLKEKYHLINS--KNGAVQVEIKWKAI 505 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~--~~~~~~~~L~~~--~~G~i~l~~~~~~~ 505 (505)
-+....+|.+.++|++.... ......++|... .+..++|+++..++
T Consensus 88 --~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~ 137 (143)
T PF10358_consen 88 --SGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSEL 137 (143)
T ss_pred --CCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEEC
Confidence 12236999999999999984 456788999875 37889999888764
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.22 Score=43.49 Aligned_cols=113 Identities=18% Similarity=0.244 Sum_probs=77.8
Q ss_pred EEEEeeecCCCCC-----CCCCC--EEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCC------------CCCeEEE
Q 038990 389 KATEYGAKDLEGK-----HHNNP--YAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAP------------LKEKIHI 449 (505)
Q Consensus 389 ~v~v~~a~~L~~~-----~~~dp--yv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~------------~~~~l~i 449 (505)
.+.|..++-.-.. +..+. ++-+.++++..+|+.+..+.+|.|+|.|-|.+.... ..+.+++
T Consensus 12 ~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihi 91 (156)
T PF15627_consen 12 HLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHI 91 (156)
T ss_pred EEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEE
Confidence 5566665543210 23333 444455788889999999999999999999997653 2347888
Q ss_pred EEEEccCCccCCCCCccEEEEEeccccccCCEE--eEEEEeCCC------CCceEEEEEEEEe
Q 038990 450 EVKSKRRGLRLRSKESLGYVDINLHDVLHNGRL--KEKYHLINS------KNGAVQVEIKWKA 504 (505)
Q Consensus 450 ~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~--~~~~~L~~~------~~G~i~l~~~~~~ 504 (505)
-|...+. .+...++|+-.++...++..+.. .-..+|.+. ..|-+.++++..|
T Consensus 92 vli~~d~---~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP 151 (156)
T PF15627_consen 92 VLIRTDP---SGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLP 151 (156)
T ss_pred EEEEecC---CCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeec
Confidence 8887664 44558999999999888876533 445566543 2577777777655
|
|
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.11 Score=46.68 Aligned_cols=90 Identities=18% Similarity=0.295 Sum_probs=62.7
Q ss_pred EEEEEeeecCCCC-CCCCCCEEEEEE--cCeE----EEeecccCCCCCccCceEEEEee--CCCCCCeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEG-KHHNNPYAVVIC--RGEQ----KKTKMIKKCRDPIWNEEFQFDFE--EAPLKEKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~-~~~~dpyv~v~~--~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~i~V~d~~~~~ 458 (505)
-+|+|+.+.++.. ....+-||++.+ +++. ..|+.+..+.++.|||..+|.+. +.+.+..|.|+||+.....
T Consensus 10 f~i~i~~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~~~ 89 (173)
T cd08693 10 FSITLHKISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSKKA 89 (173)
T ss_pred EEEEEEEeccCccCCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecccc
Confidence 3788999999986 446777877644 5543 36666665678999998888764 4455668999999865310
Q ss_pred c-------------CCCCCccEEEEEeccccc
Q 038990 459 R-------------LRSKESLGYVDINLHDVL 477 (505)
Q Consensus 459 ~-------------~~~d~~lG~~~i~L~~l~ 477 (505)
. .+....||.++++|.+-.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~ 121 (173)
T cd08693 90 KGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYK 121 (173)
T ss_pred cccccccccccccccCcceEEEEEeEEEEccc
Confidence 0 112468999999998743
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.019 Score=56.77 Aligned_cols=110 Identities=18% Similarity=0.163 Sum_probs=78.9
Q ss_pred cCCeEEEEEEEeeccCccccCCCCCCCcEEEEEEC--CeecceeeeeeeCCCCCCeEceeEEEEeecC-----------C
Q 038990 258 KKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLS--GERIPAKKTSVKMKTLNPEWNEDFKLTVKDP-----------E 324 (505)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~--~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~-----------~ 324 (505)
+.....|.+.|+++.+++........|-|+++.+. .+...+.+|.++++|.+|.|+|.|.+.+..- .
T Consensus 363 dl~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fk 442 (523)
T KOG3837|consen 363 DLKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFK 442 (523)
T ss_pred ccchhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHH
Confidence 34556777788888877655422335778887752 2222345899999999999999999988641 1
Q ss_pred CCEEEEEEEEcCCC-CCCcccEEEEEECccCCCCCeeEEEEecc
Q 038990 325 TQVLQLHVYDWEKV-GTHDKLGMQVVPLRSLTPNETKELTLDLV 367 (505)
Q Consensus 325 ~~~L~v~v~d~d~~-~~d~~lG~~~i~l~~l~~~~~~~~~l~l~ 367 (505)
...++|++|+...+ ..|.++|.|.+.+.-|...-.-+..++|.
T Consensus 443 r~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~ 486 (523)
T KOG3837|consen 443 RLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLK 486 (523)
T ss_pred hcCeeEEEeeccccccccceeceeeeeehhhhcccchhhceecc
Confidence 34589999998754 57889999999999888664445556654
|
|
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.15 Score=45.91 Aligned_cols=94 Identities=21% Similarity=0.239 Sum_probs=63.9
Q ss_pred EEEEEEEeeccCccccCCCCCCCcEEEEEE--CCeecce-eeeeeeC----CCCCCeEceeEEEEee---cCCCCEEEEE
Q 038990 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPA-KKTSVKM----KTLNPEWNEDFKLTVK---DPETQVLQLH 331 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l--~~~~~~~-~~T~~~~----~t~nP~wne~f~~~v~---~~~~~~L~v~ 331 (505)
..+.|+|.++.+++........|-|+.+.+ +++.... ..|+... -...+.|||...|.+. -+....|.+.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 567899999999988765456788888754 5444311 1333211 1235779999888775 2346789999
Q ss_pred EEEcCCCC---------CCcccEEEEEECccCC
Q 038990 332 VYDWEKVG---------THDKLGMQVVPLRSLT 355 (505)
Q Consensus 332 v~d~d~~~---------~d~~lG~~~i~l~~l~ 355 (505)
+|+....+ .+..||.+.++|-+-.
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~ 120 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFR 120 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEcch
Confidence 99976543 3568999999987643
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.08 Score=57.32 Aligned_cols=90 Identities=24% Similarity=0.357 Sum_probs=66.8
Q ss_pred eEEEEEEEeeccCccccCCCCCCCcEEEEEECCee----cceeeeeee-CCCCCCeEce-eEEEE-eecCCCCEEEEEEE
Q 038990 261 VGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER----IPAKKTSVK-MKTLNPEWNE-DFKLT-VKDPETQVLQLHVY 333 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~----~~~~~T~~~-~~t~nP~wne-~f~~~-v~~~~~~~L~v~v~ 333 (505)
.+.+.|+|+++.-|..++ ...||.|.+-+-. ...+||++. .++.||+|+| .|.|. |.-+.-..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 578899999999997665 4589999884421 123566665 5678999996 55554 22345567999999
Q ss_pred EcCCCCCCcccEEEEEECccCCCCC
Q 038990 334 DWEKVGTHDKLGMQVVPLRSLTPNE 358 (505)
Q Consensus 334 d~d~~~~d~~lG~~~i~l~~l~~~~ 358 (505)
+.. ..++|+=.+|+..+..+-
T Consensus 778 eEg----gK~ig~RIlpvd~l~~GY 798 (1189)
T KOG1265|consen 778 EEG----GKFIGQRILPVDGLNAGY 798 (1189)
T ss_pred ccC----CceeeeeccchhcccCcc
Confidence 975 469999999999998873
|
|
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.64 Score=40.32 Aligned_cols=80 Identities=20% Similarity=0.248 Sum_probs=51.5
Q ss_pred EECCeecc--eeeeeeeCCC-CCCeEceeEEEEee---cCCCCEEEEEEEEcCCCCCC----cccEEEEEECccCCCCC-
Q 038990 290 SLSGERIP--AKKTSVKMKT-LNPEWNEDFKLTVK---DPETQVLQLHVYDWEKVGTH----DKLGMQVVPLRSLTPNE- 358 (505)
Q Consensus 290 ~l~~~~~~--~~~T~~~~~t-~nP~wne~f~~~v~---~~~~~~L~v~v~d~d~~~~d----~~lG~~~i~l~~l~~~~- 358 (505)
+.|++... ...|.....+ .++.|||...|.+. -|....|.++||+.+....+ ..||.+.++|-+-...-
T Consensus 11 y~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~~L~ 90 (142)
T PF00792_consen 11 YHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRGQLR 90 (142)
T ss_dssp EETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTSBBE
T ss_pred EECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCCccc
Confidence 33555443 2356655555 79999999999875 24577899999998765555 69999999998764332
Q ss_pred eeEEEEecccc
Q 038990 359 TKELTLDLVKN 369 (505)
Q Consensus 359 ~~~~~l~l~~~ 369 (505)
...+.+.++..
T Consensus 91 ~G~~~L~lW~~ 101 (142)
T PF00792_consen 91 QGPQKLSLWPD 101 (142)
T ss_dssp EEEEEEE-EET
T ss_pred CCCEEEEEEcC
Confidence 22455666654
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.13 Score=45.56 Aligned_cols=72 Identities=13% Similarity=0.211 Sum_probs=52.5
Q ss_pred CCCCCEEEEEE--cCeE----EEeecccCCCCCccCceEEEEee--CCCCCCeEEEEEEEccCCccCCCCCccEEEEEec
Q 038990 402 HHNNPYAVVIC--RGEQ----KKTKMIKKCRDPIWNEEFQFDFE--EAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINL 473 (505)
Q Consensus 402 ~~~dpyv~v~~--~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L 473 (505)
..++-||++.+ +++. ..|+.+.-+..+.|||-.+|.+. +.+.+..|.|+||+... .+....+|.++++|
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~---~~~~~~vg~~~~~l 104 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSG---TGKAVPFGGTTLSL 104 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecC---CCCceEEEEEEEee
Confidence 35777888765 3432 26666666778999998888775 44556689999999863 23567999999999
Q ss_pred ccc
Q 038990 474 HDV 476 (505)
Q Consensus 474 ~~l 476 (505)
.+-
T Consensus 105 Fd~ 107 (159)
T cd08397 105 FNK 107 (159)
T ss_pred ECC
Confidence 874
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.18 Score=44.63 Aligned_cols=74 Identities=26% Similarity=0.386 Sum_probs=52.6
Q ss_pred CCCCcEEEEEE--CCeecc-eeeeeeeCCCCCCeEceeEEEEee--c-CCCCEEEEEEEEcCCCCCCcccEEEEEECccC
Q 038990 281 GASDPYVQLSL--SGERIP-AKKTSVKMKTLNPEWNEDFKLTVK--D-PETQVLQLHVYDWEKVGTHDKLGMQVVPLRSL 354 (505)
Q Consensus 281 g~~dpyv~v~l--~~~~~~-~~~T~~~~~t~nP~wne~f~~~v~--~-~~~~~L~v~v~d~d~~~~d~~lG~~~i~l~~l 354 (505)
..+|-||.+.+ ++.... ...|+.+.-+..+.|||...|++. + +.+..|.|++||.+..++...+|.+.++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 34677887755 333221 125555555667899999998875 2 34678999999998666778999999999764
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.46 Score=42.80 Aligned_cols=90 Identities=20% Similarity=0.217 Sum_probs=54.4
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEE--ECCeecceeeeeeeCCCCCCeEceeEEEEee--c-CCCCEEEEEEEEcCC
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLS--LSGERIPAKKTSVKMKTLNPEWNEDFKLTVK--D-PETQVLQLHVYDWEK 337 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~--l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~--~-~~~~~L~v~v~d~d~ 337 (505)
.++|+|.++..+. .+......-||.+. .++......+|+....+.+|.|||...|.+. + +....|.|+||+...
T Consensus 11 ~friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~ 89 (178)
T cd08399 11 KFRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA 89 (178)
T ss_pred CEEEEEEeecccC-cCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence 4677787776432 22122233455553 3444332335666666778999998888765 2 346789999999742
Q ss_pred CC----------------CCcccEEEEEECcc
Q 038990 338 VG----------------THDKLGMQVVPLRS 353 (505)
Q Consensus 338 ~~----------------~d~~lG~~~i~l~~ 353 (505)
.. .+..||.+.+.|-+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 90 PALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred CcccccccccccccccccccceEEEEEEEEEc
Confidence 21 14456777777655
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.37 Score=42.51 Aligned_cols=87 Identities=21% Similarity=0.353 Sum_probs=58.0
Q ss_pred EEEEeeecCCCC--CCCCCCEEEEEE--cCeE----EEeecccCCCCCccCceEEEEee--CCCCCCeEEEEEEEccCCc
Q 038990 389 KATEYGAKDLEG--KHHNNPYAVVIC--RGEQ----KKTKMIKKCRDPIWNEEFQFDFE--EAPLKEKIHIEVKSKRRGL 458 (505)
Q Consensus 389 ~v~v~~a~~L~~--~~~~dpyv~v~~--~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~i~V~d~~~~~ 458 (505)
+|.++...+... ....+-||++.+ +++. +.|.....+.++.|||..+|.+. +.+.+..|.|++|+....
T Consensus 11 ~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~- 89 (156)
T cd08380 11 RIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSEP- 89 (156)
T ss_pred EEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEecC-
Confidence 567777776653 235666766644 4432 24444444478999998888864 445566899999997632
Q ss_pred cCCCCCccEEEEEecccc
Q 038990 459 RLRSKESLGYVDINLHDV 476 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l 476 (505)
....+..||.++++|-+-
T Consensus 90 ~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 90 GSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred CCCcceEEEEEeEEeEcc
Confidence 012468999999999874
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain | Back alignment and domain information |
|---|
Probab=92.85 E-value=1.5 Score=39.23 Aligned_cols=95 Identities=18% Similarity=0.254 Sum_probs=67.7
Q ss_pred CCCCEEEEEEcCeEE-Eeeccc--CCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCccEEEEEeccccccC
Q 038990 403 HNNPYAVVICRGEQK-KTKMIK--KCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHN 479 (505)
Q Consensus 403 ~~dpyv~v~~~~~~~-kT~v~~--~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~ 479 (505)
...-|++++++++.. +|+... ....-.|||.|.+.+...+ +.|.++||... ...+..|+.+.+++-.....
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~P--esi~l~i~E~~----~~~~~~la~v~vpvP~~~~~ 109 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWP--ESIKLEIYEKS----GLSDRLLAEVFVPVPGSTVH 109 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCC--CEEEEEEEEcc----CccceEEEEEEeeCCCCccc
Confidence 567799999999775 444333 3344558999999998764 68999999986 36789999999998655443
Q ss_pred --CE--EeEEEEeCCC------------------------CCceEEEEEEEE
Q 038990 480 --GR--LKEKYHLINS------------------------KNGAVQVEIKWK 503 (505)
Q Consensus 480 --~~--~~~~~~L~~~------------------------~~G~i~l~~~~~ 503 (505)
.. ..++|++... -+|+|.+++.|-
T Consensus 110 ~~~~~~~~~~~eFsS~~~~~~~~~~vg~~~~~~~~~~~~~tsG~l~~~~sW~ 161 (168)
T PF15625_consen 110 TSTDNVPLEEYEFSSDQPVHPDHEGVGSFEADGSNSTSLFTSGSLSYSVSWA 161 (168)
T ss_pred ccccCCceEeEEEcCCceeeccceeccccccCCCCcccceeeeEEEEecEEe
Confidence 11 3456655421 168999998885
|
|
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.31 Score=46.76 Aligned_cols=91 Identities=22% Similarity=0.251 Sum_probs=64.8
Q ss_pred cCCeEEEEEEEeeccCccccCC--CCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEc
Q 038990 258 KKPVGILHVKVIRAIRLLKMDI--FGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDW 335 (505)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~ 335 (505)
....|+|.+++..+++|.-... .-.-+-||++..+.+. ..||.+.....--.|.|+|+..+.+ ...+.+-||.|
T Consensus 47 ~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh--~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvySW 122 (442)
T KOG1452|consen 47 VSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQH--PARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYSW 122 (442)
T ss_pred ecccceEEEEEecccccccChhccCceeeeeeeeeecccC--ccccccccCCCCccchhhceeeccc--ceeeeEEEeec
Confidence 3467999999999999975542 2245889999887554 2466666555566799999998865 35788999999
Q ss_pred CCCCCCcccEEEEEECc
Q 038990 336 EKVGTHDKLGMQVVPLR 352 (505)
Q Consensus 336 d~~~~d~~lG~~~i~l~ 352 (505)
+.-.++++.-.-.+.+.
T Consensus 123 ~pq~RHKLC~~g~l~~~ 139 (442)
T KOG1452|consen 123 PPQRRHKLCHLGLLEAF 139 (442)
T ss_pred Cchhhccccccchhhhh
Confidence 87666665433333333
|
|
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=91.91 E-value=3.1 Score=35.84 Aligned_cols=104 Identities=17% Similarity=0.225 Sum_probs=65.7
Q ss_pred CeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeee-CCCCCCeEceeEEEEeec--------CCCCEEEE
Q 038990 260 PVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVK-MKTLNPEWNEDFKLTVKD--------PETQVLQL 330 (505)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~-~~t~nP~wne~f~~~v~~--------~~~~~L~v 330 (505)
..-.+.+++++..+++. ....-||+...+.......+|... ..+-.-.|||+|.+.+.- .....+.|
T Consensus 5 ~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred eeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 45577889999998876 223445555555443112233322 233456899999887651 12456889
Q ss_pred EEEEcCCCCCCcccEEEEEECccCCCC--CeeEEEEecc
Q 038990 331 HVYDWEKVGTHDKLGMQVVPLRSLTPN--ETKELTLDLV 367 (505)
Q Consensus 331 ~v~d~d~~~~d~~lG~~~i~l~~l~~~--~~~~~~l~l~ 367 (505)
.|+....-++...+|.+.++|.+.... ......+.|.
T Consensus 81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~ 119 (143)
T PF10358_consen 81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLK 119 (143)
T ss_pred EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCc
Confidence 999875433446999999999998875 3444555543
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=91.35 E-value=2.4 Score=33.30 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=56.6
Q ss_pred CCCCEEEEEEcCeEE-EeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCccEEEEEeccccccCCE
Q 038990 403 HNNPYAVVICRGEQK-KTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGR 481 (505)
Q Consensus 403 ~~dpyv~v~~~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~ 481 (505)
..+..+.+.+.++.. .|.-. ...+..|++.|.+.+... +.|.|+|+-++- ..+-|-.-+.|.+...
T Consensus 8 ~~eV~avLklDn~~VgqT~Wk-~~s~q~WDQ~Fti~LdRs---RELEI~VywrD~------RslCav~~lrLEd~~~--- 74 (98)
T cd08687 8 CSEVSAVLKLDNTVVGQTQWK-PKSNQAWDQSFTLELERS---RELEIAVYWRDW------RSLCAVKFLKLEDERH--- 74 (98)
T ss_pred ccceEEEEEEcCeEEeecccc-ccccccccceeEEEeecc---cEEEEEEEEecc------hhhhhheeeEhhhhcc---
Confidence 356677777776554 45432 346788999999999654 689999998873 3667777788887432
Q ss_pred EeEEEEeCCCCCceEEEEEEE
Q 038990 482 LKEKYHLINSKNGAVQVEIKW 502 (505)
Q Consensus 482 ~~~~~~L~~~~~G~i~l~~~~ 502 (505)
...+.-.++|.+..+++|
T Consensus 75 ---~~~~~lepqg~l~~ev~f 92 (98)
T cd08687 75 ---EVQLDMEPQLCLVAELTF 92 (98)
T ss_pred ---cceeccccccEEEEEEEe
Confidence 222222347888777766
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=91.19 E-value=1.3 Score=38.39 Aligned_cols=56 Identities=20% Similarity=0.426 Sum_probs=39.9
Q ss_pred EeecccCC-CCCccCceEEEEee--CCCCCCeEEEEEEEccCCccCCCC----CccEEEEEecccc
Q 038990 418 KTKMIKKC-RDPIWNEEFQFDFE--EAPLKEKIHIEVKSKRRGLRLRSK----ESLGYVDINLHDV 476 (505)
Q Consensus 418 kT~v~~~t-~nP~wne~f~f~v~--~~~~~~~l~i~V~d~~~~~~~~~d----~~lG~~~i~L~~l 476 (505)
.|+....+ .++.|||..+|.+. +.+.+..|.|+||.... .... ..||.+.++|.+-
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~---~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDS---KKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEEC---STTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecC---CCccccceeEEEEEEEEeECC
Confidence 56656655 79999998888764 55566699999998764 2233 6999999999876
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.66 E-value=0.74 Score=50.25 Aligned_cols=84 Identities=17% Similarity=0.215 Sum_probs=63.0
Q ss_pred EEEEeeecCCCCCCCCCCEEEEEEcC-------eEEEeeccc-CCCCCccCc-eEEEEeeCCCCCCeEEEEEEEccCCcc
Q 038990 389 KATEYGAKDLEGKHHNNPYAVVICRG-------EQKKTKMIK-KCRDPIWNE-EFQFDFEEAPLKEKIHIEVKSKRRGLR 459 (505)
Q Consensus 389 ~v~v~~a~~L~~~~~~dpyv~v~~~~-------~~~kT~v~~-~t~nP~wne-~f~f~v~~~~~~~~l~i~V~d~~~~~~ 459 (505)
.|+|++++=|.. .....||+|.+.+ +..+|+++. ++.||+|+| .|.|.---.+.-..|.|.||+.+
T Consensus 706 sV~VISgqFLSd-rkvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg---- 780 (1189)
T KOG1265|consen 706 SVTVISGQFLSD-RKVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG---- 780 (1189)
T ss_pred EEEEEeeeeccc-cccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeeccC----
Confidence 789999887755 3566999999865 234788777 489999985 77776432222248999999876
Q ss_pred CCCCCccEEEEEeccccccCC
Q 038990 460 LRSKESLGYVDINLHDVLHNG 480 (505)
Q Consensus 460 ~~~d~~lG~~~i~L~~l~~~~ 480 (505)
..++|+=.++++.+..+.
T Consensus 781 ---gK~ig~RIlpvd~l~~GY 798 (1189)
T KOG1265|consen 781 ---GKFIGQRILPVDGLNAGY 798 (1189)
T ss_pred ---CceeeeeccchhcccCcc
Confidence 489999999998877654
|
|
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=90.48 E-value=2 Score=38.70 Aligned_cols=89 Identities=13% Similarity=0.187 Sum_probs=54.8
Q ss_pred EEEEeeecCCCCCC--CCCCEEEEEE--cCeE---EEeecccCCCCCccCceEEEEee--CCCCCCeEEEEEEEccCCc-
Q 038990 389 KATEYGAKDLEGKH--HNNPYAVVIC--RGEQ---KKTKMIKKCRDPIWNEEFQFDFE--EAPLKEKIHIEVKSKRRGL- 458 (505)
Q Consensus 389 ~v~v~~a~~L~~~~--~~dpyv~v~~--~~~~---~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~i~V~d~~~~~- 458 (505)
+|.|+++..+.... ...-||++.+ ++.. .+|+....+.+|.|||-.+|.+. +.+.+..|.|+||+.....
T Consensus 13 riki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~~~~ 92 (178)
T cd08399 13 RVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKAPAL 92 (178)
T ss_pred EEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEecCcc
Confidence 56666666443222 2335565533 3332 26666666788999998888775 4445568999999863210
Q ss_pred ---cC---------CCCCccEEEEEeccccc
Q 038990 459 ---RL---------RSKESLGYVDINLHDVL 477 (505)
Q Consensus 459 ---~~---------~~d~~lG~~~i~L~~l~ 477 (505)
.+ ..+..||.+.++|.+-.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~ 123 (178)
T cd08399 93 SSKKSAESPSSESKGKHQLLYYVNLLLIDHR 123 (178)
T ss_pred cccccccccccccccccceEEEEEEEEEcCC
Confidence 01 12568999999998733
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=90.23 E-value=2 Score=34.68 Aligned_cols=74 Identities=22% Similarity=0.249 Sum_probs=46.5
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEE--CCeecc-eeeeeeeCCCCCCeEceeEEEEee---cCCCCEEEEEEEEcCC
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIP-AKKTSVKMKTLNPEWNEDFKLTVK---DPETQVLQLHVYDWEK 337 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l--~~~~~~-~~~T~~~~~t~nP~wne~f~~~v~---~~~~~~L~v~v~d~d~ 337 (505)
+.+.+..+.+.........++-||.+.+ ++.... ...|+.+.-...+.|||...|.+. -+....|.+++|+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 4556666666654433223578888754 444332 124555555566899999888765 2346789999999753
|
Outlier of C2 family. |
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=90.16 E-value=2.9 Score=37.92 Aligned_cols=55 Identities=22% Similarity=0.378 Sum_probs=39.0
Q ss_pred ceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEEEEcCCCCC--CcccEEEEEEC
Q 038990 297 PAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHVYDWEKVGT--HDKLGMQVVPL 351 (505)
Q Consensus 297 ~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v~d~d~~~~--d~~lG~~~i~l 351 (505)
..++|.+...+.+|.|+|++.+.+... ....|.|++++.....+ ...+|.+-+||
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 346888999999999999999988643 45678898887542211 14566666665
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=89.12 E-value=2.5 Score=37.06 Aligned_cols=106 Identities=16% Similarity=0.261 Sum_probs=72.1
Q ss_pred CCeEEEEEEEeeccCccccCC--CCCCCcEE--EEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCC----------
Q 038990 259 KPVGILHVKVIRAIRLLKMDI--FGASDPYV--QLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPE---------- 324 (505)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~--~g~~dpyv--~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~---------- 324 (505)
...-.|.++|..++-....-. .+..+.-. -+.+++++ ++|+.+..+.+|.|+|.|-|.+....
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QR---F~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~l 82 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQR---FRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTL 82 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCce---EecCCcccccCCCCCCcEEEEecccccccccchhHh
Confidence 345678888888775433211 13334433 44556666 58889999999999999999987432
Q ss_pred ---CCEEEEEEEEcCCCCCCcccEEEEEECccCCCCCee--EEEEecc
Q 038990 325 ---TQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETK--ELTLDLV 367 (505)
Q Consensus 325 ---~~~L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~~~~--~~~l~l~ 367 (505)
.+.+.+.|...|..+...++|.-.++-+.+...... ....+|.
T Consensus 83 ls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~ 130 (156)
T PF15627_consen 83 LSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELC 130 (156)
T ss_pred hcCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEe
Confidence 356788888877766678888888888776655443 4445543
|
|
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=89.08 E-value=3.7 Score=37.28 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=40.7
Q ss_pred eeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEEEEcCCCC-C--CcccEEEEEECccCCCC--CeeEEEEecc
Q 038990 298 AKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHVYDWEKVG-T--HDKLGMQVVPLRSLTPN--ETKELTLDLV 367 (505)
Q Consensus 298 ~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v~d~d~~~-~--d~~lG~~~i~l~~l~~~--~~~~~~l~l~ 367 (505)
...|.+..++.+|.|+|+|.+.+... ....|.|++|+...-. + +..+|.+.+||-+ ... ......+.+.
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~-~g~~i~dg~~~L~v~ 135 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD-NGTIIQDGEHELPVY 135 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB--TS-B--SEEEEEEEE
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee-CCeEecCCCEEEEEE
Confidence 45778888899999999999988743 3568999999975432 1 2689999999988 433 3345666654
|
|
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=87.47 E-value=1.5 Score=39.39 Aligned_cols=89 Identities=18% Similarity=0.263 Sum_probs=58.7
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEE--cCeE----EEeeccc----CCCCCccCceEEEEee--CCCCCCeEEEEEE
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVIC--RGEQ----KKTKMIK----KCRDPIWNEEFQFDFE--EAPLKEKIHIEVK 452 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~--~~~~----~kT~v~~----~t~nP~wne~f~f~v~--~~~~~~~l~i~V~ 452 (505)
..++|..+.+++.. ...+-|+.+.+ +++. ..|+... -...+.|||-.+|.+. +.+.+..|.|++|
T Consensus 10 ~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl~ 89 (171)
T cd04012 10 LSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTLY 89 (171)
T ss_pred EEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEEE
Confidence 47888899988764 25778887754 4443 2444322 1346779998777764 4445568999999
Q ss_pred EccCCcc------CCCCCccEEEEEecccc
Q 038990 453 SKRRGLR------LRSKESLGYVDINLHDV 476 (505)
Q Consensus 453 d~~~~~~------~~~d~~lG~~~i~L~~l 476 (505)
+...... -..+..||.++++|-+-
T Consensus 90 ~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 90 GTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEecCCccccccccccceEEEEEeEeeEcc
Confidence 8753100 01357999999999874
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >PTZ00447 apical membrane antigen 1-like protein; Provisional | Back alignment and domain information |
|---|
Probab=86.76 E-value=4.4 Score=39.70 Aligned_cols=104 Identities=12% Similarity=0.178 Sum_probs=70.4
Q ss_pred EEEEeeecCCCCCCCCCCEEEEEEcCeEEEeecccCCCCCccC--ceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCcc
Q 038990 389 KATEYGAKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWN--EEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESL 466 (505)
Q Consensus 389 ~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wn--e~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~l 466 (505)
-|.|++..++.. ....|+.+..+....+|..+.-+..-.-+ +.....+.. -+..|++.++-+. +.+..-+
T Consensus 61 LVeI~EI~~i~k--~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQ--cDnTLkI~lfKKk----Lvkk~hI 132 (508)
T PTZ00447 61 LVKINEIFNINK--YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQ--CDETLRVDLFTTK----LTKKVHI 132 (508)
T ss_pred EEEehhhhcccc--ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeee--cCceEEEEEEecc----ccceeEE
Confidence 344555444443 56789999998888888666654443333 444444443 3468999999775 7788999
Q ss_pred EEEEEeccc-cccCC-EEeEEEEeCCCC--CceEEEEE
Q 038990 467 GYVDINLHD-VLHNG-RLKEKYHLINSK--NGAVQVEI 500 (505)
Q Consensus 467 G~~~i~L~~-l~~~~-~~~~~~~L~~~~--~G~i~l~~ 500 (505)
|.+.+.++. ++.+. ...+||-+...+ .++|+|++
T Consensus 133 gdI~InIn~dIIdk~FPKnkWy~c~kDGq~~cRIqLSF 170 (508)
T PTZ00447 133 GQIKIDINASVISKSFPKNEWFVCFKDGQEICKVQMSF 170 (508)
T ss_pred EEEEecccHHHHhccCCccceEEEecCCceeeeEEEEe
Confidence 999999974 55544 568999997654 56666664
|
|
| >cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins | Back alignment and domain information |
|---|
Probab=86.20 E-value=5 Score=36.58 Aligned_cols=55 Identities=16% Similarity=0.308 Sum_probs=38.9
Q ss_pred ceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEEEEcCCC-CCC---cccEEEEEEC
Q 038990 297 PAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHVYDWEKV-GTH---DKLGMQVVPL 351 (505)
Q Consensus 297 ~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v~d~d~~-~~d---~~lG~~~i~l 351 (505)
...+|.+...+.+|.|+|++.+.+... ....|.|++++.... .+| ..+|.+-+||
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL 113 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKL 113 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEee
Confidence 346888888899999999999988632 466899999886421 122 3466666665
|
Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=85.61 E-value=4.2 Score=32.03 Aligned_cols=64 Identities=20% Similarity=0.337 Sum_probs=48.0
Q ss_pred CCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcccEEEEEECccC
Q 038990 283 SDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSL 354 (505)
Q Consensus 283 ~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~l~~l 354 (505)
++-.+.+.+++... .+|..+ ...+..|++.|.+.+. .+..|++.||-.|. ..+.|...+.|++.
T Consensus 9 ~eV~avLklDn~~V--gqT~Wk-~~s~q~WDQ~Fti~Ld--RsRELEI~VywrD~---RslCav~~lrLEd~ 72 (98)
T cd08687 9 SEVSAVLKLDNTVV--GQTQWK-PKSNQAWDQSFTLELE--RSRELEIAVYWRDW---RSLCAVKFLKLEDE 72 (98)
T ss_pred cceEEEEEEcCeEE--eecccc-ccccccccceeEEEee--cccEEEEEEEEecc---hhhhhheeeEhhhh
Confidence 67788888887654 456553 3357899999999995 36789999998874 35777777777773
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=85.19 E-value=3.4 Score=37.48 Aligned_cols=57 Identities=12% Similarity=0.236 Sum_probs=34.8
Q ss_pred EEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCCccCCCC--CccEEEEEeccc
Q 038990 417 KKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRGLRLRSK--ESLGYVDINLHD 475 (505)
Q Consensus 417 ~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~d--~~lG~~~i~L~~ 475 (505)
..|.+..++.+|.|+|+|...++..... ..|.+++++.... .+++ ..+|...++|.+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~--~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCK--ESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---S--SSS-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccc--cccCccceeEEEEEEeee
Confidence 4788889999999999999999765333 3788999986542 2222 799999999987
|
|
| >PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain | Back alignment and domain information |
|---|
Probab=83.62 E-value=6.5 Score=35.14 Aligned_cols=72 Identities=17% Similarity=0.311 Sum_probs=53.8
Q ss_pred CCCcEEEEEECCeecceeeeeeeC--CCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcccEEEEEECccCCCC
Q 038990 282 ASDPYVQLSLSGERIPAKKTSVKM--KTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPN 357 (505)
Q Consensus 282 ~~dpyv~v~l~~~~~~~~~T~~~~--~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~ 357 (505)
+..-|+++.++++.. .+|+... ....-.+||.|.+.+.. --..|.++||.... ..+..|+++.+|+-.....
T Consensus 36 ~~~~~ikl~~N~k~V--~~T~~~~l~~dF~v~f~~~f~v~i~~-~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~ 109 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEV--SRTRSRPLWSDFRVHFNEIFNVQITR-WPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVH 109 (168)
T ss_pred heeEEEEEEECCEEE--EeeeeEecCCCeEEeccCEEEEEEec-CCCEEEEEEEEccC-ccceEEEEEEeeCCCCccc
Confidence 456799999998765 3554433 33334678999999976 45789999999886 6789999999998765544
|
|
| >PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function | Back alignment and domain information |
|---|
Probab=81.00 E-value=6.2 Score=32.34 Aligned_cols=92 Identities=16% Similarity=0.265 Sum_probs=48.6
Q ss_pred EEEEEEcC-eEEEeecccCCCCCccCceEEEEeeCCCC------CCeEEEEEEEccCCccCCCCCccEEEEEeccccccC
Q 038990 407 YAVVICRG-EQKKTKMIKKCRDPIWNEEFQFDFEEAPL------KEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHN 479 (505)
Q Consensus 407 yv~v~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~~------~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~ 479 (505)
||.+.+.. +.+.|.++. ..+|.+|-+-.|.+..... ...+.++++... ...-..+|.+.+++.+++++
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~----g~d~~tla~~~i~l~~ll~~ 76 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL----GSDFETLAAGQISLRPLLES 76 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-----SS-EEEEEEEEE--SHHHH-
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec----cCCeEEEEEEEeechhhhcC
Confidence 34444433 445666665 8899999999999875421 347899998754 22357999999999999974
Q ss_pred C--EEeEEEEeCCCC---CceEEEEEEEE
Q 038990 480 G--RLKEKYHLINSK---NGAVQVEIKWK 503 (505)
Q Consensus 480 ~--~~~~~~~L~~~~---~G~i~l~~~~~ 503 (505)
. .+...-.|.+.. -|.|...++.+
T Consensus 77 ~~~~i~~~~~l~g~~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 77 NGERIHGSATLVGVSGEDFGTLEYWIRLR 105 (107)
T ss_dssp -S--EEEEEEE-BSSS-TSEEEEEEEEEE
T ss_pred CCceEEEEEEEeccCCCeEEEEEEEEEec
Confidence 3 466667775542 47777666654
|
It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A. |
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=80.03 E-value=5.7 Score=36.11 Aligned_cols=57 Identities=14% Similarity=0.318 Sum_probs=41.9
Q ss_pred EEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCCccCCC-CCccEEEEEeccc
Q 038990 417 KKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRGLRLRS-KESLGYVDINLHD 475 (505)
Q Consensus 417 ~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~-d~~lG~~~i~L~~ 475 (505)
.+|.+..++.+|.|+|++.+.++..... ..|.+++++.... ..+ ...+|-.-++|-+
T Consensus 55 ~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~--~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 55 YRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTK--DKGEKKLFGFSFVPLMR 113 (189)
T ss_pred EEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeec--cCCCCCceEEEEEeecc
Confidence 4788999999999999999999765333 3688888775432 122 2679988888843
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 505 | ||||
| 2nsq_A | 155 | Crystal Structure Of The C2 Domain Of The Human E3 | 2e-12 | ||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 2e-11 | ||
| 1dqv_A | 296 | Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt | 4e-10 | ||
| 3hn8_A | 296 | Crystal Structure Of Synaptotagmin Length = 296 | 4e-10 | ||
| 3b7y_A | 153 | Crystal Structure Of The C2 Domain Of The E3 Ubiqui | 5e-09 | ||
| 2r83_A | 284 | Crystal Structure Analysis Of Human Synaptotagmin 1 | 2e-08 | ||
| 3m7f_B | 176 | Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX | 2e-08 | ||
| 3f00_A | 143 | Crystal Structure Of Synaptotagmin I C2a Domain Wit | 2e-08 | ||
| 3f04_A | 143 | Crystal Structure Of Synaptotagmin I C2a Domain Len | 2e-08 | ||
| 1rsy_A | 152 | Structure Of The First C2-domain Of Synaptotagmin I | 2e-08 | ||
| 1byn_A | 128 | Solution Structure Of The Calcium-Bound First C2-Do | 2e-08 | ||
| 3gpe_A | 137 | Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain | 3e-08 | ||
| 1dsy_A | 139 | C2 Domain From Protein Kinase C (Alpha) Complexed W | 4e-08 | ||
| 2d8k_A | 141 | Solution Structure Of The First C2 Domain Of Synapt | 4e-08 | ||
| 2uzp_A | 144 | Crystal Structure Of The C2 Domain Of Human Protein | 1e-07 | ||
| 3rpb_A | 140 | The C2b-Domain Of Rabphilin: Structural Variations | 1e-07 | ||
| 2cm6_A | 166 | Crystal Structure Of The C2b Domain Of Rabphilin3a | 1e-07 | ||
| 1a25_A | 149 | C2 Domain From Protein Kinase C (Beta) Length = 149 | 1e-07 | ||
| 3pfq_A | 674 | Crystal Structure And Allosteric Activation Of Prot | 2e-07 | ||
| 4dnl_A | 140 | Crystal Structure Of A C2 Domain Of A Protein Kinas | 5e-07 | ||
| 2chd_A | 142 | Crystal Structure Of The C2a Domain Of Rabphilin-3a | 6e-07 | ||
| 2k3h_A | 140 | Structural Determinants For Ca2+ And Pip2 Binding B | 6e-07 | ||
| 2cm5_A | 166 | Crystal Structure Of The C2b Domain Of Rabphilin Le | 8e-07 | ||
| 1k5w_A | 152 | Three-Dimensional Structure Of The Synaptotagmin 1 | 2e-06 | ||
| 2lha_A | 151 | Solution Structure Of C2b With Ip6 Length = 151 | 2e-06 | ||
| 1tjm_A | 159 | Crystallographic Identification Of Sr2+ Coordinatio | 2e-06 | ||
| 3jzy_A | 510 | Crystal Structure Of Human Intersectin 2 C2 Domain | 7e-06 | ||
| 1wfj_A | 136 | C2 Domain-Containing Protein From Putative Elicitor | 2e-05 | ||
| 1rlw_A | 126 | Calcium-Phospholipid Binding Domain From Cytosolic | 5e-04 | ||
| 1rh8_A | 142 | Three-Dimensional Structure Of The Calcium-Free Pic | 5e-04 | ||
| 1cjy_A | 749 | Human Cytosolic Phospholipase A2 Length = 749 | 5e-04 | ||
| 1bci_A | 138 | C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minim | 8e-04 |
| >pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155 | Back alignment and structure |
|
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296 | Back alignment and structure |
|
| >pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296 | Back alignment and structure |
|
| >pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153 | Back alignment and structure |
|
| >pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284 | Back alignment and structure |
|
| >pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176 | Back alignment and structure |
|
| >pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143 | Back alignment and structure |
|
| >pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143 | Back alignment and structure |
|
| >pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152 | Back alignment and structure |
|
| >pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128 | Back alignment and structure |
|
| >pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137 | Back alignment and structure |
|
| >pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139 | Back alignment and structure |
|
| >pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141 | Back alignment and structure |
|
| >pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144 | Back alignment and structure |
|
| >pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A Janus-Faced Domain Length = 140 | Back alignment and structure |
|
| >pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a Length = 166 | Back alignment and structure |
|
| >pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149 | Back alignment and structure |
|
| >pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674 | Back alignment and structure |
|
| >pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140 | Back alignment and structure |
|
| >pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142 | Back alignment and structure |
|
| >pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140 | Back alignment and structure |
|
| >pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin Length = 166 | Back alignment and structure |
|
| >pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b- Domain: Synaptotagmin 1 As A Phospholipid Binding Machine Length = 152 | Back alignment and structure |
|
| >pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6 Length = 151 | Back alignment and structure |
|
| >pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site In Synaptotagmin I C2b Domain Length = 159 | Back alignment and structure |
|
| >pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510 | Back alignment and structure |
|
| >pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136 | Back alignment and structure |
|
| >pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic Phospholipase A2 Length = 126 | Back alignment and structure |
|
| >pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142 | Back alignment and structure |
|
| >pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2 Length = 749 | Back alignment and structure |
|
| >pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized Average Structure Length = 138 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 9e-44
Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 19/229 (8%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNED--FKLT 319
L V +I+A L +D+ G SDPYV++ L ++ +T V KTLNP +NE FK+
Sbjct: 19 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 78
Query: 320 VKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNPNDPQDKK 379
+ + L + VYD+++ HD +G VP+ ++ E DL +
Sbjct: 79 YSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGD 138
Query: 380 FERKESEVGKATE-----YGAKDL---EGKHHNNPYAVVIC-----RGEQKKTKMIKKCR 426
V A + AK+L + ++PY + R ++KKT + K
Sbjct: 139 ICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTL 198
Query: 427 DPIWNEEFQFDFEEAPLKEK-IHIEVKSKRRGLRLRSKESLGYVDINLH 474
+P +NE F F+ +++ + + V ++ +++G V + +
Sbjct: 199 NPYYNESFSFEVPFEQIQKVQVVVTVLDYD---KIGKNDAIGKVFVGYN 244
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 92.2 bits (229), Expect = 4e-21
Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 4/96 (4%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNED--FK 317
G L V ++ A L KMD+ G SDPYV++ L +G+R+ KKT++K TLNP +NE F+
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 209
Query: 318 LTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRS 353
+ + + + + V D++K+G +D +G V S
Sbjct: 210 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS 245
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 6e-39
Identities = 53/242 (21%), Positives = 95/242 (39%), Gaps = 30/242 (12%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDF--KLT 319
L V++++A+ L D G SDPYV++ L +R +T V KTLNP +NE F +
Sbjct: 20 DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVP 79
Query: 320 VKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRS--LTPNETKELTLDLVKNTNPNDPQD 377
+ + + L VYD+++ HD +G V+ + L D+++ +
Sbjct: 80 LAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLG 139
Query: 378 K---------KFERKESEVGKATEYGAKDLEGKHHN---NPYAVVIC-----RGEQKKTK 420
+ + K A +L+ +PY R +++KT
Sbjct: 140 ELNFSLCYLPTAGLLTVTIIK-----ASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTS 194
Query: 421 MIKKCRDPIWNEEFQFDFEEAPLKEK-IHIEVKSKRRGLRLRSKESLGYVDINLHDVLHN 479
+ K +P +NE FD ++ + I V + E +G + +
Sbjct: 195 IKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYD---CIGHNEVIGVCRVGPEAADPH 251
Query: 480 GR 481
GR
Sbjct: 252 GR 253
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 95.3 bits (237), Expect = 5e-22
Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNE--DFK 317
G+L V +I+A L MD+ G SDPYV+ SL G R+ +KTS+K TLNP +NE F
Sbjct: 152 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 211
Query: 318 LTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETK 360
+ + E L + V D++ +G ++ +G+ V + P+ +
Sbjct: 212 VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGRE 254
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 5e-37
Identities = 41/110 (37%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 259 KPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKL 318
K VGIL VKV++A LL D G SDP+ L L +R +T K LNPEWN+ F
Sbjct: 10 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDR---LQTHTVYKNLNPEWNKVFTF 66
Query: 319 TVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368
+KD VL++ V+D + D LG +PL S+ + L
Sbjct: 67 PIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKD 115
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 1e-12
Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 12/121 (9%)
Query: 386 EVGKATEYGAKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKE 445
+V KA + A D GK ++P+ ++ ++ +T + K +P WN+ F F + + +
Sbjct: 18 KVLKAADLLAADFSGK--SDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIK--DIHD 73
Query: 446 KIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNG----RLKEKYHLINSKNGAVQVEIK 501
+ + V + + LG V I L + LK K L + G + +E+
Sbjct: 74 VLEVTVFDEDGDKP---PDFLGKVAIPLLSIRDGQPNCYVLKNK-DLEQAFKGVIYLEMD 129
Query: 502 W 502
Sbjct: 130 L 130
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 9e-37
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 4/133 (3%)
Query: 253 SLGAIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER---IPAKKTSVKMKTLN 309
L ++ I+ V+VI I L K DI GASDPYV+++L + + +T K+LN
Sbjct: 11 GLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLN 70
Query: 310 PEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKN 369
P+WNE+ V P+ L V+D ++ D LG VPL L + K+
Sbjct: 71 PKWNEEILFRV-HPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKD 129
Query: 370 TNPNDPQDKKFER 382
+ K +
Sbjct: 130 FVLHPRSHKSRVK 142
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 1e-07
Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 24/134 (17%)
Query: 387 VGKATEYGAKDLEGKHHNNPYAVV------ICRGEQKKTKMIKKCRDPIWNEEFQFDFEE 440
V KD+ G ++PY V +TK IKK +P WNEE F
Sbjct: 26 VIAGIGLAKKDILGA--SDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVH- 82
Query: 441 APLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKN------- 493
P + ++ EV + R R + LG VD+ L+ + E+ +
Sbjct: 83 -PQQHRLLFEVFDENRLTR---DDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHK 138
Query: 494 ----GAVQVEIKWK 503
G +++++ +
Sbjct: 139 SRVKGYLRLKMTYL 152
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 9e-37
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Query: 258 KKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFK 317
G+L V V A + FG DP V + E+ KKT LNP WNE +
Sbjct: 3 SGSSGMLRVIVESA-SNIPKTKFGKPDPIVSVIFKDEK---KKTKKVDNELNPVWNEILE 58
Query: 318 LTVKDPE---TQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNPND 374
++ + L + V D+E +G + +G V L+ LT ++++ L L+ N
Sbjct: 59 FDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKG 118
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 2e-11
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 406 PYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLK--EKIHIEVKSKRRGLRLRSK 463
P VI + E+KKTK + +P+WNE +FD PL + I VK +
Sbjct: 29 PIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFE---TIGQN 85
Query: 464 ESLGYVDINLHDVLHNGRLKEKYHLINSKN 493
+ +G + L D+ + Y LI+ N
Sbjct: 86 KLIGTATVALKDLTGDQSRSLPYKLISLLN 115
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 2e-36
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 4/128 (3%)
Query: 258 KKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE---RIPAKKTSVKMKTLNPEWNE 314
++ VKVI I L K DI GASDPYV+++L + + +T K+LNP+WNE
Sbjct: 4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNE 63
Query: 315 DFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNPND 374
+ V + V+D ++ D LG VPL L + K+ +
Sbjct: 64 EILFRVLPQR-HRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHP 122
Query: 375 PQDKKFER 382
K +
Sbjct: 123 RSHKSRVK 130
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 3e-08
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 387 VGKATEYGAKDLEGKHHNNPYAVV------ICRGEQKKTKMIKKCRDPIWNEEFQFDFEE 440
V KD+ G ++PY V +TK IKK +P WNEE F
Sbjct: 14 VIAGIGLAKKDILGA--SDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVL- 70
Query: 441 APLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHN 479
P + +I EV + RL + LG VD+ L+ +
Sbjct: 71 -PQRHRILFEVFDEN---RLTRDDFLGQVDVPLYPLPTE 105
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 1e-34
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 10/125 (8%)
Query: 255 GAIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNE 314
P G L V ++ A L D DPYVQL+ + K + PEWNE
Sbjct: 3 SGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQD--QKSNVAEGMGTTPEWNE 60
Query: 315 DFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNPND 374
F TV + T+ L+ ++D + D +G +PL + + + T N
Sbjct: 61 TFIFTVSEGTTE-LKAKIFDKDVGTEDDAVGEATIPLEPVFVEGS-------IPPTAYNV 112
Query: 375 PQDKK 379
+D++
Sbjct: 113 VKDEE 117
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 3e-13
Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 12/117 (10%)
Query: 394 GAKDLEGKHHN---NPYAVVICRGEQKKTKMIKKC-RDPIWNEEFQFDFEEAPLKEKIHI 449
AK LE +PY + CR + +K+ + + P WNE F F E ++
Sbjct: 18 SAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG--TTELKA 75
Query: 450 EVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKN---GAVQVEIKWK 503
++ K +++G I L V G + + + G + V + +K
Sbjct: 76 KIFDKD---VGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFK 129
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 2e-34
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 264 LHVKVIRAIRLLK---MDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTV 320
V V+RA ++ K D+ DPYV+L +S K+T +NP WNE F+ +
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 321 KDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTN 371
+ VL++ + D + LG + S+ E KE+ + T
Sbjct: 65 DPNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTE 114
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 2e-12
Identities = 14/111 (12%), Positives = 37/111 (33%), Gaps = 10/111 (9%)
Query: 395 AKDLEGKHHNNPYAVVICRGEQK---KTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEV 451
D+ +PY + +T+ +P+WNE F+F + + + I +
Sbjct: 20 FGDMLDT--PDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDP-NQENVLEITL 76
Query: 452 KSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKW 502
E+LG + + + + + +++ ++
Sbjct: 77 MDANYV----MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEV 123
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 3e-31
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 15/138 (10%)
Query: 246 EIPILDGSLGAIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKM 305
E + L K + + V+ A L D G+SDPYV + + + K+T
Sbjct: 1 EFAVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTK---KRTKTIY 57
Query: 306 KTLNPEWNEDFKLTVKDPETQVLQLHVYDW-----------EKVGTHDKLGMQVVPLRSL 354
LNP W E+F + +++ V D K + D LG ++ +R+L
Sbjct: 58 GNLNPVWEENFHFECHNSS-DRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL 116
Query: 355 TPNETKELTLDLVKNTNP 372
+ LD + +
Sbjct: 117 SGEMDVWYNLDKRTDKSA 134
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 2e-11
Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 17/128 (13%)
Query: 386 EVGKATEYGAKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKE 445
V A AKD G ++PY V +K+TK I +P+W E F F+ + +
Sbjct: 22 TVVCAQGLQAKDKTGS--SDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSS--D 77
Query: 446 KIHIEV--------KSKRRGLRLRSKESLGYVDINLHDVLHNG----RLKEKYHLINSKN 493
+I + V ++ + S + LG I + + L ++ ++ +
Sbjct: 78 RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKR-TDKSAVS 136
Query: 494 GAVQVEIK 501
GA+++ I
Sbjct: 137 GAIRLHIS 144
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 1e-30
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFK---L 318
L VK+++A L D G SDP+V++ L ++ +T VK K LNP WNE F
Sbjct: 26 STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF 85
Query: 319 TVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366
+ ++L L V D+++ +D +G +PL + + + DL
Sbjct: 86 PYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDL 133
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-06
Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 11/102 (10%)
Query: 395 AKDLEGKHHN---NPYAVVIC---RGEQKKTKMIKKCRDPIWNEEFQFDF--EEAPLKEK 446
A++L K + +P+ + + + +TK+ +K +P WNE F F+ E ++
Sbjct: 35 AQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRI 94
Query: 447 IHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHL 488
++++V R + +G V I L+ V L
Sbjct: 95 LYLQVLDYD---RFSRNDPIGEVSIPLNKVDLTQMQTFWKDL 133
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 4e-30
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNEDFK-- 317
L +IRA L MD G +DPYV+L L + +T T NP WNE +
Sbjct: 29 SNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYH 88
Query: 318 -LTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368
+T +D + + L++ V D +K G ++ +G L+ L N+ K + L +
Sbjct: 89 GITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER 140
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 9e-07
Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 12/109 (11%)
Query: 387 VGKATEYGAKDLEGKHHNNPYAVV-----ICRGEQKKTKMIKKCRDPIWNEEFQFDF--E 439
+ +A D G +PY + + + +TK ++ R+P+WNE Q+ E
Sbjct: 35 IIRAKGLKPMDSNGL--ADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITE 92
Query: 440 EAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHL 488
E ++ + I V + + E +G +L + N R L
Sbjct: 93 EDMQRKTLRISVCDED---KFGHNEFIGETRFSLKKLKANQRKNFNICL 138
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-29
Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 10/122 (8%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVK 321
L + VI A + PYV++++ G+ KKT T +P+W + + V
Sbjct: 36 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQS---KKTEKCNNTNSPKWKQPLTVIVT 92
Query: 322 DPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPN-----ETKELTLDLVKNTNPNDPQ 376
L V+ + + + LG + + + E +TL L + P +
Sbjct: 93 P--VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETI 150
Query: 377 DK 378
Sbjct: 151 GD 152
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 5e-16
Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 11/105 (10%)
Query: 395 AKDLEGKHHN---NPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEV 451
AK E K + +PY V G+ KKT+ P W + K+H V
Sbjct: 45 AKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP---VSKLHFRV 101
Query: 452 KSKRRGLRLRSKESLGYVDINLHDVL--HNGRLKEKYHLINSKNG 494
S + L+S LG +++++ L +N +L+E +
Sbjct: 102 WSHQ---TLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD 143
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 1e-28
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDF--KLT 319
L V +I+A L +D+ G SDPYV++ L ++ +T V KTLNP +NE F K+
Sbjct: 34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93
Query: 320 VKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366
+ + L + VYD+++ HD +G VP+ ++ E DL
Sbjct: 94 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-08
Identities = 24/110 (21%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 387 VGKATEYGAKDLEGKHHNNPYAVVIC----RGEQKKTKMIKKCRDPIWNEEFQFDFEEAP 442
+ +A E A D+ G ++PY V + + ++ +TK+ +K +P++NE+F F +
Sbjct: 40 IIQAAELPALDMGGT--SDPY-VKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSE 96
Query: 443 LKEK-IHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINS 491
L K + + V R + +G + ++ V +E L ++
Sbjct: 97 LGGKTLVMAVYDFD---RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 143
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-28
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP 323
+ + V+ A L K D F DP+ ++ + G T TL+P+WN+ + L V
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQC-HSTDTVKNTLDPKWNQHYDLYVGKT 65
Query: 324 ETQVLQLHVYDWEKVGTHDK---LGMQVVPLRSLTP-NETKELTLDLVKNTNPNDPQDKK 379
++ + + V++ +K+ LG + +++ +T LDL K NP+D +
Sbjct: 66 DS--ITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCK-LNPSDTDAVR 122
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 6e-11
Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 16/123 (13%)
Query: 394 GAKDLEGKHHN---NPYAVVI--CRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIH 448
AK+L K +P+A ++ G+ T +K DP WN+ + + + I
Sbjct: 13 CAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT---DSIT 69
Query: 449 IEVKSKRRGLRLRSKESLGYVDINLHDVLHNGR-------LKEKYHLINSKN-GAVQVEI 500
I V + ++ + + LG V + + + L + G + V +
Sbjct: 70 ISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSL 129
Query: 501 KWK 503
+ +
Sbjct: 130 QTR 132
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 9e-28
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDF--KLT 319
L V +I+A L +D+ G SDPYV++ L ++ +T V KTLNP +NE F K+
Sbjct: 42 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 101
Query: 320 VKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366
+ + L + VYD+++ HD +G VP+ ++ E DL
Sbjct: 102 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 148
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 5e-09
Identities = 21/106 (19%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 395 AKDL---EGKHHNNPYAVVIC----RGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEK- 446
A +L + ++PY V + + ++ +TK+ +K +P++NE+F F + L K
Sbjct: 51 AAELPALDMGGTSDPY-VKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKT 109
Query: 447 IHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSK 492
+ + V R + +G + ++ V +E L +++
Sbjct: 110 LVMAVYDFD---RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE 152
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 9e-28
Identities = 20/110 (18%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 395 AKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPI-WNEEFQFDFEEAPLK-EKIHIEVK 452
+L G+ + A V RG+ +++++ C D ++E F++ + + E + I++
Sbjct: 30 VSELRGRA--DRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIF 87
Query: 453 SKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKW 502
+ + + S + +G + L V+ R++ LI+ N ++ +
Sbjct: 88 NYSK---VFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSM 134
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 2e-10
Identities = 17/104 (16%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 281 GASDPYVQLSLSGERIPAKKTSVKMKTLNP-EWNEDFKLTVKDP--ETQVLQLHVYDWEK 337
G +D +++ G+ + V + +++E F+ V +VL++ ++++ K
Sbjct: 35 GRADRIAKVTFRGQS---FYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSK 91
Query: 338 VGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNPNDPQDKKFE 381
V ++ +G + L+ + E++ L+ + N E
Sbjct: 92 VFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSME 135
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 115 bits (287), Expect = 3e-27
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 4/127 (3%)
Query: 258 KKPVGILHVKVIRAIRLLK---MDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNE 314
+ V V+RA ++ K D+ DPYV+L +S K+T +NP WNE
Sbjct: 14 HQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNE 73
Query: 315 DFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNPND 374
F+ + + VL++ + D V + LG + S+ E KE+ + T
Sbjct: 74 TFEFILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVL 132
Query: 375 PQDKKFE 381
+
Sbjct: 133 EMSLEVC 139
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 52.6 bits (125), Expect = 2e-07
Identities = 15/111 (13%), Positives = 39/111 (35%), Gaps = 10/111 (9%)
Query: 395 AKDLEGKHHNNPYAVVICRG---EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEV 451
D+ +PY + +K+T+ +P+WNE F+F + + + I +
Sbjct: 35 FGDMLDT--PDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDP-NQENVLEITL 91
Query: 452 KSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKW 502
E+LG + + + + + +++ ++
Sbjct: 92 MDANYV----MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEV 138
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 4e-27
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLS--GERIPAKKTSVKMKTLNPEWNEDFKLT 319
+L V V A L+ MD G SDPYV+L L + +KT +LNPEWNE F+
Sbjct: 31 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 90
Query: 320 VKDPE-TQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKE 361
+K+ + + L + ++DW+ +D +G + L
Sbjct: 91 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDG 133
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 7e-09
Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 11/114 (9%)
Query: 386 EVGKATEYGAKDLEGKHHNNPYAVVIC-----RGEQKKTKMIKKCRDPIWNEEFQFDFEE 440
V A D G ++PY + ++KTK IK +P WNE F+F +E
Sbjct: 36 VVRDAKNLVPMDPNGL--SDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKE 93
Query: 441 APLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNG 494
+ ++ +E+ R + +G + + + L + + L++ + G
Sbjct: 94 SDKDRRLSVEIWDWDLTSR---NDFMGSLSFGISE-LQKAGVDGWFKLLSQEEG 143
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 4e-25
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 14/124 (11%)
Query: 259 KPVGILHVKVIRAIRLLKMDIFG----------ASDPYVQLSLSGERIPAKKTSVKMKTL 308
K G L V++ A+ L DPY+ +S+ R+ +TS K KT
Sbjct: 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRV--GQTSTKQKTN 83
Query: 309 NPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368
P +NE+F V D L+L V+ +G + + + L T +
Sbjct: 84 KPTYNEEFCANVTDG--GHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWV 141
Query: 369 NTNP 372
+ P
Sbjct: 142 DLEP 145
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 5e-09
Identities = 21/131 (16%), Positives = 39/131 (29%), Gaps = 21/131 (16%)
Query: 386 EVGKATEYGAKDLEGKHHN--------NPYAVVICRGEQK-KTKMIKKCRDPIWNEEFQF 436
+G+A +H +PY V + +T +K P +NEEF
Sbjct: 34 RIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCA 93
Query: 437 DFEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEK----YHLINSK 492
+ + + + V + L + + ++L + L
Sbjct: 94 NVTDG---GHLELAVFHET---PLGYDHFVANCTLQFQELLRTTGASDTFEGWVDL--EP 145
Query: 493 NGAVQVEIKWK 503
G V V I
Sbjct: 146 EGKVFVVITLT 156
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 98.0 bits (244), Expect = 2e-24
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 15/117 (12%)
Query: 259 KPVGILHVKVIRAIRLLKMDIF-----------GASDPYVQLSLSGERIPAKKTSVKMKT 307
G+L +K+ A+ L DPY+ L++ RI +T+ K KT
Sbjct: 3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRI--GQTATKQKT 60
Query: 308 LNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTL 364
+P W+++F V + ++L V+ +G D + + L N ++
Sbjct: 61 NSPAWHDEFVTDVCNGRK--IELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFED 115
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 8e-09
Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 11/121 (9%)
Query: 389 KATEYGAKDLEGKHHNN----PYAVVICRGEQ-KKTKMIKKCRDPIWNEEFQFDFEEAPL 443
K T + +D G PY + + +T +K P W++EF D
Sbjct: 19 KPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-- 76
Query: 444 KEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWK 503
KI + V + + + I ++L NG + + G V V I
Sbjct: 77 -RKIELAVFHDA---PIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEPEGKVYVIIDLS 132
Query: 504 A 504
Sbjct: 133 G 133
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 1e-23
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Query: 262 GILHVKVIRAIRLLKMDIFG-ASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTV 320
V + A L MD SDPY+++++ E+ KT V KTL+P ++E F
Sbjct: 22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81
Query: 321 KDPE---TQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETK-ELTLDLVKN 369
L + +++ D +G ++PL + +E K + +++
Sbjct: 82 IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 9e-07
Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 395 AKDL----EGKHHNNPYAVVIC----RGEQKKTKMIKKCRDPIWNEEFQFD-FEEAPLKE 445
A+ L E ++PY + + + + KT++++K DP ++E F F ++E
Sbjct: 31 ARGLPAMDEQSMTSDPY-IKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQE 89
Query: 446 K-IHIEVKSKRRGLRLRSKESLGYVDINLHDV-LHNGRLKEKYHLINSKN 493
+H + S R + +G V I L + L G++ +I+ +
Sbjct: 90 LALHFTILSFD---RFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGPS 136
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 93.2 bits (232), Expect = 7e-23
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 6/108 (5%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAK-KTSVKMKTLNPEWNE--DFKL 318
L V + A + + G D YVQ S++ + +T++K + L+ W E L
Sbjct: 26 AELFVTRLEA---VTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL 82
Query: 319 TVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366
++ T L L + ++ H G + L + +L
Sbjct: 83 AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGEL 130
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-07
Identities = 13/88 (14%), Positives = 25/88 (28%), Gaps = 10/88 (11%)
Query: 395 AKDLEGKHHNNPYAVVIC----RGEQK-KTKMIKKCRDPIWNEEFQFDFEEAPLKEK-IH 448
A + Y V G + +T + K+ W E E L +
Sbjct: 35 AVTSNHDGGCDCY-VQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLT 93
Query: 449 IEVKSKRRGLRLRSKESLGYVDINLHDV 476
+ +++ R G + + L
Sbjct: 94 LTLRTCD---RFSRHSVAGELRLGLDGT 118
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 3e-22
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNED--FK 317
+ V +I+A L MDI G SDPYV++ L +R+ KKT K + LNP +NE F
Sbjct: 16 NSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFD 75
Query: 318 LTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRS 353
+ + + + V D +K+ +D +G + +S
Sbjct: 76 IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKS 111
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 5e-07
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 417 KKTKMIKKCRDPIWNEEFQFDFEEAPLKEK-IHIEVKSKRRGLRLRSKESLGYVDINLHD 475
KKT K+ +PI+NE F FD L+E I I V K +L + +G + ++
Sbjct: 55 KKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKD---KLSRNDVIGKIYLSWKS 111
Query: 476 V 476
Sbjct: 112 G 112
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 3e-22
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNEDFKLT 319
G L V +IR + L MD G SDP+V+L L + KT +K KTLNPE+NE+F
Sbjct: 37 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96
Query: 320 VKDPE--TQVLQLHVYDWEKVGTHDKLGMQVVPLRSL 354
+K + + L + V+D++ ++D +G + + +
Sbjct: 97 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 133
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 6e-07
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 417 KKTKMIKKCRDPIWNEEFQFDFEEAPLKEK-IHIEVKSKRRGLRLRSKESLGYVDINLHD 475
KT++ KK +P +NEEF +D + + L +K + I V G +S + +G + +
Sbjct: 76 HKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIG---KSNDYIGGCQLGISA 132
Query: 476 VLHNGRLKEKYHLINSKNGAV 496
RLK Y + +K+ +
Sbjct: 133 KGE--RLKHWYECLKNKDKKI 151
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 5e-22
Identities = 28/114 (24%), Positives = 57/114 (50%), Gaps = 14/114 (12%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPA-----------KKTSVKMKTLNP 310
G L + +++A L+ D G SDP+V++ L R ++T K+LNP
Sbjct: 18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77
Query: 311 EWNEDFK---LTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKE 361
EWN+ ++++ + L++ V+D+++ ++D LG ++ L S + +
Sbjct: 78 EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTP 131
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 4e-06
Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 22/113 (19%)
Query: 395 AKDLEGKHHN---NPYAVV--------------ICRGEQKKTKMIKKCRDPIWNEEFQFD 437
A++L + +N +P+ V +++TK ++K +P WN+ +
Sbjct: 27 ARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYK 86
Query: 438 F--EEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHL 488
E +K+ + + V R S + LG V I+L H Y L
Sbjct: 87 SISMEQLMKKTLEVTVWDYD---RFSSNDFLGEVLIDLSSTSHLDNTPRWYPL 136
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 6e-22
Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNEDFKLT 319
G L V ++ A L KMD+ G SDPYV++ L +G+R+ KKT++K TLNP +NE F
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 320 VKDPE--TQVLQLHVYDWEKVGTHDKLGMQVVPLRS 353
V + + + V D++K+G +D +G V S
Sbjct: 85 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS 120
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 4e-06
Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 417 KKTKMIKKCRDPIWNEEFQFDFEEAPLKEK-IHIEVKSKRRGLRLRSKESLGYVDINLH 474
KKT + K +P +NE F F+ +++ + + V + +++G V + +
Sbjct: 64 KKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKI---GKNDAIGKVFVGYN 119
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 8e-22
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 5/110 (4%)
Query: 262 GILHVKVIRAIRLLKMDIF-GASDPYVQLSLS--GERIPAKKTSVKMKTLNPEWNEDF-- 316
L V V +L D S+PYV+ L R +KTS+K T+NP ++E
Sbjct: 23 QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRY 82
Query: 317 KLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366
++ + LQ V+ + G + LG + + S ++ + L L
Sbjct: 83 EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPL 132
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 2e-09
Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 13/119 (10%)
Query: 395 AKDL----EGKHHNNPYAVVI-----CRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKE 445
L E K +NPY R ++KT + + +P+++E +++ E+ L +
Sbjct: 32 CHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQ 91
Query: 446 K-IHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWK 503
+ + V R LG +I + + +L L + +
Sbjct: 92 RTLQFSVWHHG---RFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAESEGHHHHH 147
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 1e-21
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNED--FK 317
L V V++A L K D+ G SDPYV+++L + +RI KKT VK T N +NE F
Sbjct: 30 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 89
Query: 318 LTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRS 353
+ + E ++ V D E+ ++ +G V+ +
Sbjct: 90 IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATA 125
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 8e-07
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 417 KKTKMIKKCRDPIWNEEFQFDFEEAPLKEK-IHIEVKSKRRGLRLRSKESLGYVDINLH 474
KKT + K + ++NE F FD L+E + V RG R E +G + +
Sbjct: 69 KKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSR---NEVIGRLVLGAT 124
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 87.9 bits (218), Expect = 9e-21
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 9/114 (7%)
Query: 262 GILHVKVIRAIRLLKM-------DIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNE 314
L V+VI A L S+PYV++ L ++ +K+T VK KT P + E
Sbjct: 26 NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEE 85
Query: 315 DF--KLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366
+ ++ + + + L L V D++K H +G VPL + + L
Sbjct: 86 RYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKAL 139
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 3e-07
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
Query: 389 KATEYGAKDLEGKHHNNPYAVVIC----RGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLK 444
+ H+NPY V IC + K+T + +K + P++ E + F+ +
Sbjct: 39 PPPISHDGSRQDMAHSNPY-VKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQ 97
Query: 445 EK-IHIEVKSKRRGLRLRSKESLGYVDINLHDV 476
+ + + V + +G V + L +V
Sbjct: 98 RRTLLLTVVDFD---KFSRHCVIGKVSVPLCEV 127
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 9e-21
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNE--DFK 317
L V V L+ SDPYV++ L R +KT V KTLNP +++ DF
Sbjct: 24 NKLIVVVHACRNLIAFS-EDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFS 82
Query: 318 LTVKDPETQVLQLHVYDWEKVGTHDK--LGMQVVPLRSLTPNETKELTLDLVKNTNPN 373
+++ + + + L + V + + DK LG +V L S + DL +++ P+
Sbjct: 83 VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSGPS 140
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 3e-09
Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 395 AKDLEGKHHN--NPYAVVI-----CRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEK- 446
++L + +PY + R ++KT + KK +P++++ F F ++ +
Sbjct: 33 CRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRT 92
Query: 447 IHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHL 488
+ + VK+ L + K LG V + L + Y L
Sbjct: 93 LDVAVKNSGGFLS-KDKGLLGKVLVALASEELAKGWTQWYDL 133
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 1e-20
Identities = 13/104 (12%), Positives = 38/104 (36%), Gaps = 5/104 (4%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSL---SGERIPAKKTSVKMKTLNPEWNEDFKL 318
+ +I+ L + +++++ S +T + +NE F +
Sbjct: 43 KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWV 102
Query: 319 TVKDPE--TQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETK 360
++ P + L++ V ++ + LG + L + + +
Sbjct: 103 SMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGER 146
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-08
Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 16/108 (14%)
Query: 395 AKDL---EGKHHNNPYAVVIC-------RGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLK 444
+L + + + +T+ + ++NE F L
Sbjct: 52 LSNLSALLQQQDQKVN-IRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALH 110
Query: 445 EK-IHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEK-YHLIN 490
+K + ++V + R +E LG I+L +V +G + Y+L++
Sbjct: 111 QKTLRVDVCTTD---RSHLEECLGGAQISLAEVCRSGERSTRWYNLLS 155
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 6e-20
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 5/128 (3%)
Query: 262 GILHVKVIRAIRLLKMDI-FGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNEDFKL 318
G L V+VIRA L + PYV++ L +G I KKT + KTL+P + +
Sbjct: 30 GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVF 89
Query: 319 TVKDPETQVLQLHVY-DWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNPNDPQD 377
P+ +VLQ+ V+ D+ ++ +G+ + L L + L ++ DP
Sbjct: 90 DE-SPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSSLVDPTL 148
Query: 378 KKFERKES 385
R+ S
Sbjct: 149 APLTRRAS 156
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 3e-07
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 13/103 (12%)
Query: 395 AKDL----EGKHHNNPYAVVI-----CRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKE 445
A+ L K PY V +KKT++ +K DP++ + FD E+P +
Sbjct: 39 ARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFD--ESPQGK 96
Query: 446 KIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHL 488
+ + V R+ K +G I L ++ + + Y L
Sbjct: 97 VLQVIVWGDYG--RMDHKCFMGVAQILLEELDLSSMVIGWYKL 137
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 8e-20
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNEDFK-- 317
G L + V+ L+ D +PYV+ L + +KT + KT NP +NE
Sbjct: 20 GTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYS 78
Query: 318 -LTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKE 361
+ + + LQL V E + + LG +PL+ ++
Sbjct: 79 GYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETV 123
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 4e-07
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 12/103 (11%)
Query: 395 AKDLEGKHHN--NPYAVV-----ICRGEQKKTKMIKKCRDPIWNEEFQFDF--EEAPLKE 445
KDL + NPY + ++KTK+ +K R+P +NE + +E +
Sbjct: 29 IKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQR 88
Query: 446 KIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHL 488
++ + V S LR LG + + L D + + Y L
Sbjct: 89 ELQLSVLSAE---SLRENFFLGGITLPLKDFNLSKETVKWYQL 128
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 9e-20
Identities = 21/107 (19%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNEDFK-- 317
L V ++ A L + +PYV++ ++T KTL P+WN+ F
Sbjct: 21 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 80
Query: 318 -LTVKDPETQVLQLHVYDWEKVGTHDK--LGMQVVPLRSLTPNETKE 361
+ ++ ++L++ ++D +V + LG ++ L + ++
Sbjct: 81 PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 127
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-07
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 12/110 (10%)
Query: 395 AKDLEGKHHN---NPYAVV-----ICRGEQKKTKMIKKCRDPIWNEEFQFD-FEEAPLKE 445
AKDL + NPY + +++TK +KK +P WN+ F + +E
Sbjct: 30 AKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRE 89
Query: 446 K-IHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNG 494
+ + I + + R +R E LG + I L L + Y L +G
Sbjct: 90 RMLEITLWDQAR-VREEESEFLGEILIELETALLDDE-PHWYKLQTHDSG 137
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 2e-19
Identities = 22/107 (20%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPA--KKTSVKMKTLNPEWNEDFK-- 317
L V ++ A L + +PYV++ +R ++T KTL P+WN+ F
Sbjct: 18 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 77
Query: 318 -LTVKDPETQVLQLHVYDWEKVGTHDK--LGMQVVPLRSLTPNETKE 361
+ ++ ++L++ ++D +V + LG ++ L + ++
Sbjct: 78 PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 124
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-06
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 395 AKDLEGKHHN---NPYAVV-----ICRGEQKKTKMIKKCRDPIWNEEFQFD-FEEAPLKE 445
AKDL + NPY + +++TK +KK +P WN+ F + +E
Sbjct: 27 AKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRE 86
Query: 446 K-IHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGR 481
+ + I + + R +R E LG + I L L +
Sbjct: 87 RMLEITLWDQAR-VREEESEFLGEILIELETALLDDE 122
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 2e-19
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLS--GERIPAKKTSVKMKTLNPEWNEDFKLT 319
+L + +I L+ G DPYV++SL R+ +KT +P ++E F
Sbjct: 27 RVLLLHIIEGKGLISKQP-GTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFP 85
Query: 320 VKDPETQ-VLQLHVYDWEKVGTHDK-LGMQVVPLRSL 354
V++ + Q L + V++ +G ++SL
Sbjct: 86 VQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSL 122
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 5e-11
Identities = 22/109 (20%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 394 GAKDL--EGKHHNNPYAVV-----ICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEK 446
K L + +PY + R +KT+ + CRDP ++E F F +E +++
Sbjct: 35 EGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKR 94
Query: 447 IHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEK-YHLINSKNG 494
+ + V ++ + R +G + + +L + Y+L+ G
Sbjct: 95 LLVTVWNRAS--QSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLG 141
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 71.1 bits (173), Expect = 2e-13
Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 5/104 (4%)
Query: 260 PVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKL- 318
+ L V RA L +D Y+++ G+ +T V NP W +
Sbjct: 392 GLAHLVVSNFRAEHLWGDYTTA-TDAYLKVFFGGQE---FRTGVVWNNNNPRWTDKMDFE 447
Query: 319 TVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKEL 362
V L++ V+D + D LG S T EL
Sbjct: 448 NVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPHSGFHEVTCEL 491
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 58.4 bits (140), Expect = 3e-09
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 10/94 (10%)
Query: 402 HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLR 461
+ Y V G++ +T ++ +P W ++ F+ + ++V G
Sbjct: 412 TATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWD-- 469
Query: 462 SKESLGYVDINLHDVLHN-------GRLKEKYHL 488
+ LG D + H H GR+K YH
Sbjct: 470 -DDLLGSCDRSPHSGFHEVTCELNHGRVKFSYHA 502
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 8e-11
Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVK 321
+L V V +A + F + YV L + K T++ ++ P W +DF +
Sbjct: 5 SLLCVGVKKAKFDGAQEKF---NTYVTLKVQN----VKSTTIAVRGSQPSWEQDFMFEIN 57
Query: 322 DPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSL 354
+ + + V++ + + +G +PLR++
Sbjct: 58 RLDLGLT-VEVWN-KGLIWDTMVGTVWIPLRTI 88
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 3e-07
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 7/87 (8%)
Query: 395 AKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSK 454
AK + N Y + K T + + P W ++F FE L + +EV +K
Sbjct: 14 AKFDGAQEKFNTYVTLKV-QNVKSTTIAVRGSQPSWEQDFM--FEINRLDLGLTVEVWNK 70
Query: 455 RRGLRLRSKESLGYVDINLHDVLHNGR 481
+G V I L + +
Sbjct: 71 GLI----WDTMVGTVWIPLRTIRQSNE 93
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 1e-09
Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVK 321
+L V V +A + F + YV L + + T++ ++ P W +DF +
Sbjct: 14 SLLCVGVKKAKFDGAQEKF---NTYVTLKVQ----NVESTTIAVRGSQPSWEQDFMFEIN 66
Query: 322 DPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSL 354
+ + + V++ + + +G +PLR++
Sbjct: 67 RLDLGLT-VEVWN-KGLIWDTMVGTVWIPLRTI 97
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 7e-05
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 394 GAKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKS 453
AK + N Y + + + T ++ P W ++F FE L + +EV +
Sbjct: 22 KAKFDGAQEKFNTYVTLKVQNVESTTIAVRGS-QPSWEQDFM--FEINRLDLGLTVEVWN 78
Query: 454 KRRGLRLRSKESLGYVDINLHDVLH 478
K L +G V I L +
Sbjct: 79 K----GLIWDTMVGTVWIPLRTIRQ 99
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624 | Back alignment and structure |
|---|
Score = 55.7 bits (133), Expect = 2e-08
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 264 LHVKVIRAIRLLKMDIFGAS--DPYVQLSLSGERIPAKK---TSVKMKTLNPEWNEDFKL 318
L V++I +L K++ S DP V + + G + NP W+ +F+
Sbjct: 499 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 558
Query: 319 TVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTP 356
V P+ +++ V D++ +D +G +P SL
Sbjct: 559 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQ 596
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 7e-07
Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 15/130 (11%)
Query: 259 KPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKL 318
+G L V VI A L G S+PY ++S+ + T TLNP+WN + +
Sbjct: 384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSY---TTRTIQDTLNPKWNFNCQF 440
Query: 319 TVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNPNDPQDK 378
+KD VL L ++D ++ D LG +P+ + P +
Sbjct: 441 FIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVA------------KIRTEQESKGPMTR 488
Query: 379 KFERKESEVG 388
+ E G
Sbjct: 489 RLLLHEVPTG 498
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 49.6 bits (117), Expect = 1e-06
Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 13/104 (12%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTL---NPEWNEDFKLTV 320
L + +I A L Y +L L +T+ K ++ W E F+
Sbjct: 13 LKLWIIEARELPPKK-----RYYCELCLDDM--LYARTTSKPRSASGDTVFWGEHFEFNN 65
Query: 321 KDPETQVLQLHVYDWEKVGTHDK---LGMQVVPLRSLTPNETKE 361
+ D +K DK +G+ VP+ +L E
Sbjct: 66 LPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTE 109
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 44.6 bits (104), Expect = 6e-05
Identities = 11/110 (10%), Positives = 30/110 (27%), Gaps = 7/110 (6%)
Query: 395 AKDLEGKHHNNPYAVV----ICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIE 450
A++L K Y + + W E F+F+ ++
Sbjct: 20 ARELPPK--KRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFN-NLPAVRALRLHL 76
Query: 451 VKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEI 500
+ + + +G V + + + ++ Y + +
Sbjct: 77 YRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGM 126
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 7e-05
Identities = 75/564 (13%), Positives = 143/564 (25%), Gaps = 190/564 (33%)
Query: 34 TEITDPIIRPNDHE-----FDT-----SSVLDVFPEIPLWVKHPDYDRIDWL-NKF-VSD 81
EI I+ + F T ++ F E L +Y +L +
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL---RINYK---FLMSPIKTEQ 102
Query: 82 LWPYLDKAICSTARSNLE---PIFAEYIGKYCI-RSVDFKTLT--LGTLPP----IIHG- 130
P + + R L +FA KY + R + L L L P +I G
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFA----KYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 131 ---------IKVCETNENELILEPALRWAGNPNITLALKFFSLQITVQLLDVQIRAAPRI 181
+ VC + + + ++ + W + L + L + + P
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFW-----LNLKNCNSPETVLEMLQKLLYQIDP-- 211
Query: 182 VLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLVGGDMMAIPGLYQFIQETIRNQISALYLW 241
+ + + +KL +I+ ++ L
Sbjct: 212 -----------------NWTSRSDHSSNIKLR--------------IHSIQAELRRLLKS 240
Query: 242 PQ-PLEIPILDGSLGAIKKPVGILHVKVIRAIRLLKMDI-----FGASDPYVQLSLSGER 295
+ +L + + K A ++ V LS
Sbjct: 241 KPYENCLLVLLN----------VQNAKAWNA-----FNLSCKILLTTRFKQVTDFLSAAT 285
Query: 296 IPAKKTSVKMKTLNPEWNEDF-----KLTVKD-PETQVLQ---LHV-------------Y 333
TL P+ + +D P +VL + +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-EVLTTNPRRLSIIAESIRDGLATW 344
Query: 334 D-WEKVGTHDKLGMQV-VPLRSLTPNETKELTLDLV---KNTN--------------PND 374
D W+ V DKL + L L P E +++ L + + +D
Sbjct: 345 DNWKHV-NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 375 PQD--KKFERKESEV---GKATEYGAKDL----------EGKHHN---NPYAVVICRGEQ 416
K + S V K + + E H + Y +
Sbjct: 404 VMVVVNKLHKY-SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF--- 459
Query: 417 KKTKMIKKCRDPIWNEEFQF---------DFEEAPLKEKIH-----IEVKSKRRGLRLRS 462
+I D + + E L + +E K + +
Sbjct: 460 DSDDLIPPYLDQYF---YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516
Query: 463 KESLGYVDINLHDVLHNGRLKEKY 486
S + + L + + Y
Sbjct: 517 SGS-------ILNTLQQLKFYKPY 533
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} Length = 138 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 2e-04
Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 8/110 (7%)
Query: 262 GILHVKVIRA-IRLLKMDIFGASDPYVQLSLSGERIPAKKTSV--KMKTLNPEWNEDFKL 318
L + + + A +PY + + K T+ P W+ F
Sbjct: 10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDA 69
Query: 319 TVKDPETQVLQLHVYDW--EKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366
+ +V+Q+ V + + + + + R N E+ L+L
Sbjct: 70 HINK--GRVMQIIVKGKNVDLIS-ETTVELYSLAERCRKNNGKTEIWLEL 116
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 505 | |||
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 100.0 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.97 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.79 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.79 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.78 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.77 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.77 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.77 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.77 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.77 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.77 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.76 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.75 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.75 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.75 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.75 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.75 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.74 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.74 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.74 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.73 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.73 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.73 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.73 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.73 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.72 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.72 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.72 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.72 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.72 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.72 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.71 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.71 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.71 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.71 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.71 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.71 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.71 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.7 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.69 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.69 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.68 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.67 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.66 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.66 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.66 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.64 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.64 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.63 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.63 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.62 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.61 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.6 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.6 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.59 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.59 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.59 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.58 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.57 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.57 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.57 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.56 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.56 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.56 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.55 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.54 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.53 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.53 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.53 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.52 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.52 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.52 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.51 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.51 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.49 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.48 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.48 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.48 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.44 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.43 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.43 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.4 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.27 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.26 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.25 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.24 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.24 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.06 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.03 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.03 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.01 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 98.88 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 98.87 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 98.86 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.84 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.75 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.59 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.5 | |
| 3l4c_A | 220 | Dedicator of cytokinesis protein 1; DOCK180, DOCK1 | 90.95 | |
| 3hhm_A | 1091 | Phosphatidylinositol-4,5-bisphosphate 3-kinase cat | 89.53 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 89.43 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 87.01 | |
| 1e7u_A | 961 | Phosphatidylinositol 3-kinase catalytic subunit; p | 84.63 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 83.18 |
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=261.81 Aligned_cols=228 Identities=24% Similarity=0.345 Sum_probs=184.7
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHVYD 334 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v~d 334 (505)
+....|.|.|+|++|++|+.+|..|.+||||++++++.....++|+++++++||.|||+|.|.+... ....|.|+|||
T Consensus 14 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d 93 (284)
T 2r83_A 14 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYD 93 (284)
T ss_dssp EETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEE
T ss_pred EECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEE
Confidence 4456799999999999999999889999999999976544457899999999999999999998643 35799999999
Q ss_pred cCCCCCCcccEEEEEECccCCCCCeeEEEEeccccCCCCCccccccccc---------ccceEEEEEeeecCCCCC---C
Q 038990 335 WEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNPNDPQDKKFERK---------ESEVGKATEYGAKDLEGK---H 402 (505)
Q Consensus 335 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~g~---------~~~~a~v~v~~a~~L~~~---~ 402 (505)
+|.+++|++||++.+++.++..+.....|++|....... ....|. ......|.|++|++|+.. +
T Consensus 94 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~----~~~~G~i~l~l~~~p~~~~l~v~v~~a~~L~~~d~~~ 169 (284)
T 2r83_A 94 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEE----QEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGG 169 (284)
T ss_dssp CCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCC----CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTS
T ss_pred CCCCCCCceeEEEEEcchhcccCCcceeEEEeecccccc----ccccccEEEEEEecCcCCceEEEEEEeECCCCcCCCC
Confidence 999999999999999999999888888899886532110 111221 012248999999999863 5
Q ss_pred CCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCCccCCCCCccEEEEEecccc
Q 038990 403 HNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRGLRLRSKESLGYVDINLHDV 476 (505)
Q Consensus 403 ~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l 476 (505)
.+||||++++.. ..++|++++++.||+|||+|.|.+...... ..|.|+|||++. ++++++||++.++++.+
T Consensus 170 ~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~---~~~~~~iG~~~i~l~~~ 246 (284)
T 2r83_A 170 LSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK---IGKNDAIGKVFVGYNST 246 (284)
T ss_dssp CCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCS---SSCCCEEEEEEEETTCC
T ss_pred CcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCC---CCCCcEEEEEEECCCCC
Confidence 799999999852 346999999999999999999999765443 379999999984 78899999999999763
Q ss_pred ----------cc--CCEEeEEEEeCCC
Q 038990 477 ----------LH--NGRLKEKYHLINS 491 (505)
Q Consensus 477 ----------~~--~~~~~~~~~L~~~ 491 (505)
+. +....+||+|...
T Consensus 247 ~~~~~~w~~~~~~~~~~~~~W~~L~~~ 273 (284)
T 2r83_A 247 GAELRHWSDMLANPRRPIAQWHTLQVE 273 (284)
T ss_dssp HHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred CcHHHHHHHHHHCCCCchheeeecCCc
Confidence 22 3456799999764
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=256.13 Aligned_cols=228 Identities=25% Similarity=0.357 Sum_probs=175.4
Q ss_pred CCcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEEE
Q 038990 256 AIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHVY 333 (505)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v~ 333 (505)
.+....+.|.|+|++|++|+.+|..|.+||||++++.+.....++|+++++|+||.|||+|.|.+... ....|.|+||
T Consensus 14 ~y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~ 93 (296)
T 1dqv_A 14 RYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVY 93 (296)
T ss_dssp ECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEE
T ss_pred EEeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEE
Confidence 35567899999999999999999999999999999954333457999999999999999999998643 2458999999
Q ss_pred EcCCCCCCcccEEEEEE-CccCCC-CCeeEEEEeccccCCCCCccccccccc---------ccceEEEEEeeecCCCCC-
Q 038990 334 DWEKVGTHDKLGMQVVP-LRSLTP-NETKELTLDLVKNTNPNDPQDKKFERK---------ESEVGKATEYGAKDLEGK- 401 (505)
Q Consensus 334 d~d~~~~d~~lG~~~i~-l~~l~~-~~~~~~~l~l~~~~~~~~~~~~~~~g~---------~~~~a~v~v~~a~~L~~~- 401 (505)
|+|.+++|++||++.++ +.++.. ......|.+|..... .....|. .....+|.|++|++|+..
T Consensus 94 d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~-----~~~~~G~i~vsl~y~~~~~~l~v~v~~a~~L~~~d 168 (296)
T 1dqv_A 94 DFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGS-----EKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMD 168 (296)
T ss_dssp ECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSS-----CCSCCCEEEEEEEEETTTTEEEEEEEEEESCCCCS
T ss_pred EcCCCCCCceEEEEEeccccccccCCccceeeeccccccc-----cccccceEEEEEEeccccceeEEEEEEeecCCccC
Confidence 99999999999999996 444432 233445666643211 1111221 012248999999999763
Q ss_pred --CCCCCEEEEEEc--C---eEEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCCccCCCCCccEEEEEec
Q 038990 402 --HHNNPYAVVICR--G---EQKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRGLRLRSKESLGYVDINL 473 (505)
Q Consensus 402 --~~~dpyv~v~~~--~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~d~~lG~~~i~L 473 (505)
+.+||||++++. + .+++|++++++.||+|||.|.|.+....+. ..|.|+|||++. ++++++||++.+++
T Consensus 169 ~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~---~~~~~~iG~~~i~l 245 (296)
T 1dqv_A 169 LTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDC---IGHNEVIGVCRVGP 245 (296)
T ss_dssp SSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCS---SSCCEEEEECCCSS
T ss_pred CCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCCC---CCCCceEEEEEECC
Confidence 578999999996 2 456999999999999999999998765332 379999999984 77899999999999
Q ss_pred ccccc-------------CCEEeEEEEeCCC
Q 038990 474 HDVLH-------------NGRLKEKYHLINS 491 (505)
Q Consensus 474 ~~l~~-------------~~~~~~~~~L~~~ 491 (505)
+++.. +....+|++|...
T Consensus 246 ~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~ 276 (296)
T 1dqv_A 246 EAADPHGREHWAEMLANPRKPVEHWHQLVEE 276 (296)
T ss_dssp CTTCHHHHHHHHTSSSSSSSCSCSCCCCBBC
T ss_pred ccCCchhHHHHHHHHhCCCCceeEeeeccCc
Confidence 87643 2345677777654
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=6.1e-19 Score=150.12 Aligned_cols=107 Identities=28% Similarity=0.451 Sum_probs=95.0
Q ss_pred eEEEEEEEeeccCccc---cCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCC
Q 038990 261 VGILHVKVIRAIRLLK---MDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEK 337 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~---~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~ 337 (505)
.|.|.|+|++|++|+. .+..|.+||||++++++.....++|+++++++||.|||+|.|.+.......|.++|||+|.
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~ 81 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence 5899999999999998 4667899999999998753345799999999999999999999976677899999999998
Q ss_pred CCCCcccEEEEEECccCCCCCeeEEEEeccc
Q 038990 338 VGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
. +|++||++.++++++..+.....|++|..
T Consensus 82 ~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~~ 111 (126)
T 1rlw_A 82 V-MDETLGTATFTVSSMKVGEKKEVPFIFNQ 111 (126)
T ss_dssp S-CCEEEEEEEEEGGGSCTTCEEEEEEEETT
T ss_pred C-CCceeEEEEEEHHHccCCCcEEEEEEcCC
Confidence 7 59999999999999999888889998853
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-19 Score=158.96 Aligned_cols=111 Identities=13% Similarity=0.109 Sum_probs=95.5
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECC---eecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSG---ERIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLH 331 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~---~~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~ 331 (505)
+....+.|+|+|++|+||+++|..|.+||||++++.+ .+..++||+++++|+||+|||+|.|.+... ....|.|+
T Consensus 38 y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~ 117 (155)
T 2z0u_A 38 YDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVD 117 (155)
T ss_dssp EETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEE
T ss_pred EcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEE
Confidence 4556799999999999999999999999999999976 333357999999999999999999998642 25689999
Q ss_pred EEEcCCCCCCcccEEEEEECccCCC-CCeeEEEEecc
Q 038990 332 VYDWEKVGTHDKLGMQVVPLRSLTP-NETKELTLDLV 367 (505)
Q Consensus 332 v~d~d~~~~d~~lG~~~i~l~~l~~-~~~~~~~l~l~ 367 (505)
|||+|..++|++||++.++++++.. +.....|++|.
T Consensus 118 V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 118 VCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp EEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred EEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 9999999999999999999999964 55667788764
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-19 Score=155.76 Aligned_cols=107 Identities=29% Similarity=0.340 Sum_probs=93.2
Q ss_pred CcCCeEEEEEEEeeccCccccCCC----------CCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCC
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIF----------GASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQ 326 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~----------g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~ 326 (505)
.....|.|+|+|++|++|+++|.. |.+||||++++++.+. .+|+++++|+||.|||+|.|.+.+ .+
T Consensus 24 ~~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~--~kT~v~~ktlnP~WNE~F~f~v~~--~~ 99 (157)
T 2fk9_A 24 TMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRV--GQTSTKQKTNKPTYNEEFCANVTD--GG 99 (157)
T ss_dssp CCCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEE--EECCCCSSCSSCEEEEEEEEEEEE--EC
T ss_pred hccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEee--EEeeecCCCCCCccCcEEEEEcCC--CC
Confidence 345789999999999999988832 6799999999987653 589999999999999999999975 46
Q ss_pred EEEEEEEEcCCCCCCcccEEEEEECccCCCC----CeeEEEEecc
Q 038990 327 VLQLHVYDWEKVGTHDKLGMQVVPLRSLTPN----ETKELTLDLV 367 (505)
Q Consensus 327 ~L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~----~~~~~~l~l~ 367 (505)
.|.++|||+|.+++|++||++.++++++..+ ...+.|++|.
T Consensus 100 ~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~ 144 (157)
T 2fk9_A 100 HLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE 144 (157)
T ss_dssp EEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB
T ss_pred EEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC
Confidence 8999999999999999999999999998754 5678898874
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=151.75 Aligned_cols=113 Identities=29% Similarity=0.463 Sum_probs=98.4
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeec---CCCCEEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKD---PETQVLQLHVY 333 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~---~~~~~L~v~v~ 333 (505)
+....+.|+|+|++|++|+.++..|.+||||++++.+.....++|+++++++||.|||+|.|.+.. .....|.|+||
T Consensus 21 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~ 100 (141)
T 2d8k_A 21 YNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVL 100 (141)
T ss_dssp ECSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEE
T ss_pred EeCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEE
Confidence 445679999999999999999988999999999996544345799999999999999999998532 23578999999
Q ss_pred EcCCCCCCcccEEEEEECccCCCCCeeEEEEecccc
Q 038990 334 DWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKN 369 (505)
Q Consensus 334 d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~ 369 (505)
|++.+++|++||++.+++.++..+.....|++|...
T Consensus 101 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 136 (141)
T 2d8k_A 101 DYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPS 136 (141)
T ss_dssp ECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEEC
T ss_pred ECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCC
Confidence 999999999999999999999988888899988654
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=152.17 Aligned_cols=111 Identities=32% Similarity=0.455 Sum_probs=98.4
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHVYD 334 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v~d 334 (505)
+....+.|.|+|++|++|+.++..+.+||||++++.+.....++|+++++++||.|||+|.|.+... ....|.|+|||
T Consensus 29 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d 108 (143)
T 3f04_A 29 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD 108 (143)
T ss_dssp EETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred EeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEe
Confidence 4557799999999999999999889999999999965444457999999999999999999998633 45789999999
Q ss_pred cCCCCCCcccEEEEEECccCCCCCeeEEEEecc
Q 038990 335 WEKVGTHDKLGMQVVPLRSLTPNETKELTLDLV 367 (505)
Q Consensus 335 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~ 367 (505)
+|.+++|++||++.++|.++..+.....|++|.
T Consensus 109 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 141 (143)
T 3f04_A 109 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp CCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECB
T ss_pred CCCCCCCceEEEEEEEHHHccCCCCcceEEECc
Confidence 999999999999999999999988888999875
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.1e-18 Score=148.57 Aligned_cols=104 Identities=31% Similarity=0.500 Sum_probs=93.9
Q ss_pred CCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecC---CCCEEEEEEEEc
Q 038990 259 KPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP---ETQVLQLHVYDW 335 (505)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~---~~~~L~v~v~d~ 335 (505)
...|.|.|+|++|++|+.++. |.+||||++++++.+ ++|+++++++||+|||+|.|.+..+ ....|.++|||+
T Consensus 4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~---~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~ 79 (140)
T 2dmh_A 4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEK---KKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDF 79 (140)
T ss_dssp CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCE---EECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEET
T ss_pred CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEe---EEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEEC
Confidence 457899999999999999998 999999999999754 6999999999999999999999754 367899999999
Q ss_pred CCCCCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 336 EKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 336 d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
|..++|++||++.+++.++..+.....|+++
T Consensus 80 d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l 110 (140)
T 2dmh_A 80 ETIGQNKLIGTATVALKDLTGDQSRSLPYKL 110 (140)
T ss_dssp TCSSSCCCCEEEEEEGGGTCSSSCEEEEEEE
T ss_pred CCCCCCceEEEEEEEHHHhccCCCceeEEee
Confidence 9999999999999999999988877778773
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=153.20 Aligned_cols=112 Identities=32% Similarity=0.452 Sum_probs=98.3
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHVYD 334 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v~d 334 (505)
+....+.|.|+|++|+||+.+|..+.+||||++++.+.....++|+++++++||.|||+|.|.+... ....|.|+|||
T Consensus 37 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d 116 (152)
T 1rsy_A 37 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD 116 (152)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred EeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEE
Confidence 4557799999999999999999889999999999965433457999999999999999999988642 35789999999
Q ss_pred cCCCCCCcccEEEEEECccCCCCCeeEEEEeccc
Q 038990 335 WEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 335 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
+|.+++|++||++.+++.++..+.....|++|..
T Consensus 117 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 150 (152)
T 1rsy_A 117 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 150 (152)
T ss_dssp CCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred CCCCCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence 9999999999999999999988888888998753
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-18 Score=148.34 Aligned_cols=110 Identities=24% Similarity=0.298 Sum_probs=95.0
Q ss_pred cCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEE-eecC--CCCEEEEEE
Q 038990 258 KKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLT-VKDP--ETQVLQLHV 332 (505)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~-v~~~--~~~~L~v~v 332 (505)
+...|.|.|+|++|+||+. +..|.+||||++++.+. ...+++|+++++|+||.|||+|.|. +... ....|.|+|
T Consensus 16 ~~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V 94 (134)
T 2b3r_A 16 SYRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSV 94 (134)
T ss_dssp EEETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEE
T ss_pred eecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEE
Confidence 4467899999999999997 77789999999998433 2345799999999999999999999 7532 457899999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCCeeEEEEeccc
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
||+|..++|++||++.++++++..+.....|++|..
T Consensus 95 ~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~ 130 (134)
T 2b3r_A 95 LSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTA 130 (134)
T ss_dssp EECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC
T ss_pred EECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCC
Confidence 999999999999999999999998888889998854
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-18 Score=150.76 Aligned_cols=108 Identities=19% Similarity=0.239 Sum_probs=95.5
Q ss_pred EEEEEeeecCCCCC-------------CCCCCEEEEEEcCeE-EEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEE
Q 038990 388 GKATEYGAKDLEGK-------------HHNNPYAVVICRGEQ-KKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKS 453 (505)
Q Consensus 388 a~v~v~~a~~L~~~-------------~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d 453 (505)
.+|+|.+|++|+.. +.+||||++++++.+ .+|+++++|.||+|||+|+|.+.+. ..|.|+|||
T Consensus 31 L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~~---~~L~~~V~D 107 (157)
T 2fk9_A 31 LRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDG---GHLELAVFH 107 (157)
T ss_dssp EEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE---CEEEEEEEE
T ss_pred EEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCCC---CEEEEEEEE
Confidence 48999999999853 468999999998876 5999999999999999999999763 589999999
Q ss_pred ccCCccCCCCCccEEEEEeccccccC----CEEeEEEEeCCCCCceEEEEEEEE
Q 038990 454 KRRGLRLRSKESLGYVDINLHDVLHN----GRLKEKYHLINSKNGAVQVEIKWK 503 (505)
Q Consensus 454 ~~~~~~~~~d~~lG~~~i~L~~l~~~----~~~~~~~~L~~~~~G~i~l~~~~~ 503 (505)
++. ++.|++||++.|+|+++..+ ...+.||+|.. +|+|+|+++|.
T Consensus 108 ~d~---~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~--~G~i~l~l~~~ 156 (157)
T 2fk9_A 108 ETP---LGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP--EGKVFVVITLT 156 (157)
T ss_dssp CCS---SSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS--SCEEEEEEEEC
T ss_pred CCC---CCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC--CcEEEEEEEEE
Confidence 884 77899999999999999865 67799999974 89999999985
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=145.04 Aligned_cols=115 Identities=23% Similarity=0.432 Sum_probs=100.2
Q ss_pred eEEEEEeeecCCCCC--CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCC--CCCeEEEEEEEccCCccCCC
Q 038990 387 VGKATEYGAKDLEGK--HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAP--LKEKIHIEVKSKRRGLRLRS 462 (505)
Q Consensus 387 ~a~v~v~~a~~L~~~--~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~l~i~V~d~~~~~~~~~ 462 (505)
...|+|++|++|+.. +.+||||++++++++++|++++++.||+|||+|.|.+..+. ....|.|+|||++. ++.
T Consensus 8 ~L~v~v~~a~~L~~~~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~---~~~ 84 (140)
T 2dmh_A 8 MLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFET---IGQ 84 (140)
T ss_dssp EEEEEEEEEESCCCCSSSCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTC---SSS
T ss_pred EEEEEEEEeeCCCCCCCCCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCC---CCC
Confidence 358999999999864 58999999999999999999999999999999999997643 24689999999984 678
Q ss_pred CCccEEEEEeccccccCCEEeEEEE---eCCCC----CceEEEEEEEEe
Q 038990 463 KESLGYVDINLHDVLHNGRLKEKYH---LINSK----NGAVQVEIKWKA 504 (505)
Q Consensus 463 d~~lG~~~i~L~~l~~~~~~~~~~~---L~~~~----~G~i~l~~~~~~ 504 (505)
+++||++.++|.++..+...+.||+ |.+.. .|+|+|+++|.|
T Consensus 85 ~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p 133 (140)
T 2dmh_A 85 NKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDP 133 (140)
T ss_dssp CCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECC
T ss_pred CceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEEC
Confidence 8999999999999988877789988 65532 499999999987
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-18 Score=147.51 Aligned_cols=107 Identities=29% Similarity=0.480 Sum_probs=94.8
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeC-CCCCCeEceeEEEEeecCCCCEEEEEEEEc
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKM-KTLNPEWNEDFKLTVKDPETQVLQLHVYDW 335 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~-~t~nP~wne~f~~~v~~~~~~~L~v~v~d~ 335 (505)
...+.|.|+|+|++|++|+.++..|.+||||++++++.. .+|++++ +++||.|||+|.|.+.+ ....|.|+|||+
T Consensus 5 ~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d~ 80 (136)
T 1wfj_A 5 SSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQD---QKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDK 80 (136)
T ss_dssp CCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCE---EECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECCS
T ss_pred CCCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCcc---ceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEEC
Confidence 456899999999999999999988999999999998765 5889988 89999999999999986 567899999999
Q ss_pred CCCCCCcccEEEEEECccC-CCCCeeEEEEecc
Q 038990 336 EKVGTHDKLGMQVVPLRSL-TPNETKELTLDLV 367 (505)
Q Consensus 336 d~~~~d~~lG~~~i~l~~l-~~~~~~~~~l~l~ 367 (505)
+.+++|++||++.+++.++ ..+.....|++|.
T Consensus 81 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~ 113 (136)
T 1wfj_A 81 DVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV 113 (136)
T ss_dssp SSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEE
T ss_pred CCCCCCceEEEEEEEHHHhccCCCCCcEEEEee
Confidence 9999999999999999998 4454556777775
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=9.3e-18 Score=142.74 Aligned_cols=112 Identities=13% Similarity=0.285 Sum_probs=97.4
Q ss_pred EEEEEeeecCCCCC------CCCCCEEEEEEcC---eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEGK------HHNNPYAVVICRG---EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~~------~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~ 458 (505)
..|+|++|++|+.. +.+||||++++++ ..++|++++++.||+|||+|.|.+..+ ....|.|+|||++.
T Consensus 5 L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~~l~i~V~d~d~-- 81 (126)
T 1rlw_A 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMDANY-- 81 (126)
T ss_dssp EEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCEEEEEEEECCS--
T ss_pred EEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCC-CCCEEEEEEEECCC--
Confidence 47899999999872 6899999999986 567999999999999999999999654 34689999999984
Q ss_pred cCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEEEe
Q 038990 459 RLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWKA 504 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~~~ 504 (505)
. ++++||++.++|+++..+.....||+|.+.++|+|+++++..|
T Consensus 82 -~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~g~i~~~le~~~ 125 (126)
T 1rlw_A 82 -V-MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVAS 125 (126)
T ss_dssp -S-CCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEECCC
T ss_pred -C-CCceeEEEEEEHHHccCCCcEEEEEEcCCCceEEEEEEEEeCC
Confidence 4 5889999999999999888889999999877888888887543
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-18 Score=147.51 Aligned_cols=107 Identities=38% Similarity=0.567 Sum_probs=94.8
Q ss_pred CCcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEc
Q 038990 256 AIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDW 335 (505)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~ 335 (505)
.+..+.|.|+|+|++|++|+.++..|.+||||++++++.. .+|+++++++||.|||+|.|.+.+. .+.|.++|||+
T Consensus 7 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~~~~~t~nP~wne~f~f~~~~~-~~~l~i~V~d~ 82 (133)
T 2ep6_A 7 GDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDR---LQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDE 82 (133)
T ss_dssp CSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEE---EECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEE
T ss_pred cccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEE---EEeeeecCCCCCccccEEEEEecCC-CCEEEEEEEEC
Confidence 4566889999999999999999988999999999999864 5899999999999999999999764 57899999999
Q ss_pred CCCCCCcccEEEEEECccCCCCCeeEEEEeccc
Q 038990 336 EKVGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 336 d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
|..++|++||++.+++.++..+.. .|++|..
T Consensus 83 d~~~~~~~lG~~~i~l~~l~~~~~--~w~~L~~ 113 (133)
T 2ep6_A 83 DGDKPPDFLGKVAIPLLSIRDGQP--NCYVLKN 113 (133)
T ss_dssp ETTEEEEECCBCEEEGGGCCSSCC--EECCCBC
T ss_pred CCCCCCCeeEEEEEEHHHccCCCc--eEEEeec
Confidence 998899999999999999987654 5666643
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-18 Score=147.20 Aligned_cols=104 Identities=27% Similarity=0.400 Sum_probs=89.9
Q ss_pred CeEEEEEEEeeccCccccCCCCC-----------CCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEE
Q 038990 260 PVGILHVKVIRAIRLLKMDIFGA-----------SDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVL 328 (505)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~-----------~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L 328 (505)
..|.|+|+|++|++|+++|..++ +||||++++++... .+|+++++|+||.|||+|.|.+.+. +.|
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~--~~T~~~~~t~nP~WnE~f~f~v~~~--~~L 79 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRI--GQTATKQKTNSPAWHDEFVTDVCNG--RKI 79 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEE--EECCCCSSCSSCEEEEEEEEEEEEE--CEE
T ss_pred cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEe--eeeeEECCCcCCccCCEEEEEecCC--CEE
Confidence 46999999999999999886544 99999999987643 5889999999999999999999764 789
Q ss_pred EEEEEEcCCCCCCcccEEEEEECccCCCCC--eeEEEEecc
Q 038990 329 QLHVYDWEKVGTHDKLGMQVVPLRSLTPNE--TKELTLDLV 367 (505)
Q Consensus 329 ~v~v~d~d~~~~d~~lG~~~i~l~~l~~~~--~~~~~l~l~ 367 (505)
.++|||+|..++|++||++.++++++..+. ..+.|++|.
T Consensus 80 ~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~ 120 (136)
T 1gmi_A 80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE 120 (136)
T ss_dssp EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB
T ss_pred EEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcC
Confidence 999999999999999999999999988753 346787663
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=8.6e-18 Score=145.40 Aligned_cols=112 Identities=23% Similarity=0.391 Sum_probs=94.3
Q ss_pred CcCCeEEEEEEEeeccCccccCCC-CCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEE-eecC--CCCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIF-GASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLT-VKDP--ETQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~-v~~~--~~~~L~v~v 332 (505)
+....+.|.|+|++|+||+.+|.. +.+||||++++.+.....++|+++++++||+|||+|.|. +... ....|.|+|
T Consensus 17 y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V 96 (138)
T 1ugk_A 17 YNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTI 96 (138)
T ss_dssp EEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEE
T ss_pred EECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEE
Confidence 445678999999999999999985 899999999997543345799999999999999999996 5432 346899999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCCee-EEEEeccc
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNETK-ELTLDLVK 368 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~-~~~l~l~~ 368 (505)
||+|.+++|++||++.++++++..+... ..|.+|.+
T Consensus 97 ~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~ 133 (138)
T 1ugk_A 97 LSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133 (138)
T ss_dssp EEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred EECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence 9999999999999999999999876544 56777754
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-17 Score=143.79 Aligned_cols=105 Identities=27% Similarity=0.464 Sum_probs=91.4
Q ss_pred cCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCC
Q 038990 258 KKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEK 337 (505)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~ 337 (505)
....|.|+|+|++|++|+.+|..|.+||||++++++.. ++|+++++++||.|||+|.|.+..+ .+.|.++|||+|.
T Consensus 13 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~ 88 (148)
T 3kwu_A 13 SKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTK---KRTKTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDD 88 (148)
T ss_dssp --CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEE---EECCCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCC
T ss_pred cccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEE---EECCccCCCCCCCcccEEEEEecCC-CCEEEEEEEECCC
Confidence 34579999999999999999999999999999998754 5899999999999999999999765 4789999999998
Q ss_pred C-----------CCCcccEEEEEECccCCCCCeeEEEEeccc
Q 038990 338 V-----------GTHDKLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 338 ~-----------~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
. ++|++||++.++++++. .....|++|..
T Consensus 89 ~~~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~ 128 (148)
T 3kwu_A 89 DIKSRVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDK 128 (148)
T ss_dssp SHHHHHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBC
T ss_pred CccccccccccCCCCccEEEEEEEHHHCc--CCCCEEEEccc
Confidence 5 78999999999999994 34567777754
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.1e-18 Score=148.15 Aligned_cols=112 Identities=29% Similarity=0.457 Sum_probs=97.0
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEE-eecC--CCCEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLT-VKDP--ETQVLQLH 331 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~-v~~~--~~~~L~v~ 331 (505)
+....+.|.|+|++|++|+.++..|.+||||++++.+. +...++|+++++++||.|||+|.|. +... ....|.|+
T Consensus 24 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~ 103 (142)
T 2chd_A 24 YDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRIS 103 (142)
T ss_dssp EEGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEE
T ss_pred EeCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEE
Confidence 44577999999999999999998899999999999752 2345799999999999999999998 5321 13689999
Q ss_pred EEEcCCCCCCcccEEEEEECccCCCCCeeEEEEeccc
Q 038990 332 VYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 332 v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
|||++..++|++||++.++++++..+..+.+|++|.+
T Consensus 104 V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 140 (142)
T 2chd_A 104 VCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER 140 (142)
T ss_dssp EEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred EEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence 9999999999999999999999999988999998754
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=144.46 Aligned_cols=109 Identities=20% Similarity=0.232 Sum_probs=92.3
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe-ecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE-RIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHVY 333 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~-~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v~ 333 (505)
+....+.|+|+|++|++ +|..|.+||||++++.+. ....++|+++++|+||+|||+|.|.+... ....|.|+||
T Consensus 21 y~~~~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~ 97 (138)
T 1wfm_A 21 YDCQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLR 97 (138)
T ss_dssp EETTTTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEE
T ss_pred EeCCCCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEE
Confidence 45567999999999993 677899999999999531 22346899999999999999999998643 2568999999
Q ss_pred EcCCCCCCcccEEEEEECccCCCCCeeEEEEeccc
Q 038990 334 DWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 334 d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
|+|.+++|++||++.++|.++..+.....|++|..
T Consensus 98 d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~ 132 (138)
T 1wfm_A 98 TCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT 132 (138)
T ss_dssp ECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred ECCCCCCCcEEEEEEEEcccccCcccccceeeCcC
Confidence 99999999999999999999987667778888865
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=7e-18 Score=144.13 Aligned_cols=109 Identities=21% Similarity=0.320 Sum_probs=87.8
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeec---CCCCEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKD---PETQVLQLH 331 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~---~~~~~L~v~ 331 (505)
+....+.|.|+|++|+||+.++..|.+||||++++.+. ....++|+++++|+||.|||+|.|.+.. .....|.++
T Consensus 13 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~ 92 (129)
T 2bwq_A 13 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEIT 92 (129)
T ss_dssp EETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEE
T ss_pred EccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEE
Confidence 44567999999999999999998899999999999442 2345799999999999999999999532 235789999
Q ss_pred EEEcCCCCC--CcccEEEEEECccCCCCCeeEEEEec
Q 038990 332 VYDWEKVGT--HDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 332 v~d~d~~~~--d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
|||+|..++ |++||++.+++.++.... ...|++|
T Consensus 93 V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 128 (129)
T 2bwq_A 93 LWDQARVREEESEFLGEILIELETALLDD-EPHWYKL 128 (129)
T ss_dssp EEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred EEECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence 999999887 999999999999988654 6677765
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.2e-18 Score=150.00 Aligned_cols=113 Identities=24% Similarity=0.352 Sum_probs=97.5
Q ss_pred CcCCeEEEEEEEeeccCccccC-CCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMD-IFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLH 331 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~ 331 (505)
+....+.|.|+|++|+||+.++ ..|.+||||++++.+.. ..+++|+++++|+||.|||+|.|.+... ....|.|+
T Consensus 18 y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~ 97 (148)
T 3fdw_A 18 YEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFS 97 (148)
T ss_dssp EETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEE
T ss_pred EeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEE
Confidence 4556799999999999999988 57899999999997543 3357999999999999999999998653 24579999
Q ss_pred EEEcCCCCCCcccEEEEEECccCCCCCeeEEEEecccc
Q 038990 332 VYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKN 369 (505)
Q Consensus 332 v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~ 369 (505)
|||+|..++|++||++.++|+++..+.....|++|...
T Consensus 98 V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 135 (148)
T 3fdw_A 98 VWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGK 135 (148)
T ss_dssp EEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC
T ss_pred EEECCCCcCCcEEEEEEEEcccccccCCccceEECcCc
Confidence 99999999999999999999999877777889988654
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-17 Score=146.56 Aligned_cols=110 Identities=34% Similarity=0.523 Sum_probs=87.9
Q ss_pred cCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCee---cceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEE
Q 038990 258 KKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER---IPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYD 334 (505)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~---~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d 334 (505)
....|.|+|+|++|++|+.+|..|.+||||++++.+.. ...++|+++++++||.|||+|.|.+.. ....|.++|||
T Consensus 16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~l~~~V~d 94 (153)
T 3b7y_A 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHP-QQHRLLFEVFD 94 (153)
T ss_dssp CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECT-TTCEEEEEEEE
T ss_pred CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecC-CCCEEEEEEEE
Confidence 45779999999999999999988999999999997421 235799999999999999999999975 45789999999
Q ss_pred cCCCCCCcccEEEEEECccCCCCCee------EEEEeccc
Q 038990 335 WEKVGTHDKLGMQVVPLRSLTPNETK------ELTLDLVK 368 (505)
Q Consensus 335 ~d~~~~d~~lG~~~i~l~~l~~~~~~------~~~l~l~~ 368 (505)
+|..++|++||++.+++.++..+... ..|++|..
T Consensus 95 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~ 134 (153)
T 3b7y_A 95 ENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHP 134 (153)
T ss_dssp CCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBC
T ss_pred CCCCcCCCeeEEEEEEHHHcccCCCccccccccccccccc
Confidence 99999999999999999999876532 46777654
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.5e-18 Score=148.31 Aligned_cols=112 Identities=27% Similarity=0.338 Sum_probs=94.0
Q ss_pred CcCCeEEEEEEEeeccCcccc-CC------CCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecC--CCCE
Q 038990 257 IKKPVGILHVKVIRAIRLLKM-DI------FGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQV 327 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~-d~------~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~ 327 (505)
+....+.|.|+|++|+||+.+ +. .+.+||||++++.+.....++|+++++++||+|||+|.|.+... ....
T Consensus 21 y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~ 100 (147)
T 2enp_A 21 YDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRT 100 (147)
T ss_dssp EETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSE
T ss_pred EcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCE
Confidence 455678999999999999984 43 35899999999976443457999999999999999999998532 2458
Q ss_pred EEEEEEEcCCCCCCcccEEEEEECccCCCCCeeEEEEeccc
Q 038990 328 LQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 328 L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
|.|+|||+|.+++|++||++.+++.++........|+.|..
T Consensus 101 L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~ 141 (147)
T 2enp_A 101 LLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIP 141 (147)
T ss_dssp EEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBC
T ss_pred EEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeec
Confidence 99999999999999999999999999987776677877754
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-17 Score=142.50 Aligned_cols=113 Identities=22% Similarity=0.413 Sum_probs=98.2
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeeccc-CCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCC
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIK-KCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSK 463 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d 463 (505)
.+|+|++|++|+.. +.+||||++++++..++|++++ ++.||+|||+|.|.+.+. ...|.|+|||++. ++++
T Consensus 12 L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~--~~~l~~~V~d~~~---~~~d 86 (136)
T 1wfj_A 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG--TTELKAKIFDKDV---GTED 86 (136)
T ss_dssp EEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESS--CCEEEEEECCSSS---CTTT
T ss_pred EEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCC--CCEEEEEEEECCC---CCCC
Confidence 48999999999864 5799999999999999999999 899999999999999873 4689999999984 6789
Q ss_pred CccEEEEEecccccc-CCEEeEEEEeCCC--CCceEEEEEEEEeC
Q 038990 464 ESLGYVDINLHDVLH-NGRLKEKYHLINS--KNGAVQVEIKWKAI 505 (505)
Q Consensus 464 ~~lG~~~i~L~~l~~-~~~~~~~~~L~~~--~~G~i~l~~~~~~~ 505 (505)
++||++.++|.++.. +.....||+|... ..|+|+|+++|.|.
T Consensus 87 ~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~G~i~l~l~~~p~ 131 (136)
T 1wfj_A 87 DAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPS 131 (136)
T ss_dssp CCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred ceEEEEEEEHHHhccCCCCCcEEEEeecCCccCEEEEEEEEEEeC
Confidence 999999999999955 4456789999632 37999999999983
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-17 Score=149.18 Aligned_cols=109 Identities=27% Similarity=0.335 Sum_probs=94.9
Q ss_pred CeEEEEEEEeeccCccccCC-CCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEE-Ec
Q 038990 260 PVGILHVKVIRAIRLLKMDI-FGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVY-DW 335 (505)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~-~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~-d~ 335 (505)
..|.|.|+|++|+||+.+|. .|.+||||++++.+. ....++|+++++|+||+|||+|.|.+.. ....|.|+|| |+
T Consensus 28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~L~~~V~~d~ 106 (171)
T 2q3x_A 28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP-QGKVLQVIVWGDY 106 (171)
T ss_dssp ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC-TTEEEEEEEEEEC
T ss_pred CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC-CCCEEEEEEEEcC
Confidence 56899999999999999985 689999999998653 2235799999999999999999999853 5688999999 99
Q ss_pred CCCCCCcccEEEEEECccCCCCCeeEEEEecccc
Q 038990 336 EKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKN 369 (505)
Q Consensus 336 d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~ 369 (505)
|.+++|++||++.++++++..+.....|++|...
T Consensus 107 d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 107 GRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp STTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred CCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 9999999999999999999988888899998764
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-17 Score=145.36 Aligned_cols=108 Identities=31% Similarity=0.496 Sum_probs=93.5
Q ss_pred CeEEEEEEEeeccCccccCCCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeecCC-CCEEEEEEEEcC
Q 038990 260 PVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKDPE-TQVLQLHVYDWE 336 (505)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~~~-~~~L~v~v~d~d 336 (505)
..+.|.|+|++|++|+.++..+.+||||++++.+.. ...++|+++++++||.|||+|.|.+.... ...|.|+|||+|
T Consensus 29 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d 108 (149)
T 1a25_A 29 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWD 108 (149)
T ss_dssp SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECC
T ss_pred cCCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECC
Confidence 357899999999999999988999999999997532 23579999999999999999999996532 468999999999
Q ss_pred CCCCCcccEEEEEECccCCCCCeeEEEEeccc
Q 038990 337 KVGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
..++|++||++.+++.++..+ ....|++|..
T Consensus 109 ~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~ 139 (149)
T 1a25_A 109 LTSRNDFMGSLSFGISELQKA-GVDGWFKLLS 139 (149)
T ss_dssp SSSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred CCCCCCEEEEEEEEHHHhCcC-ccCCeEEccC
Confidence 999999999999999999876 4677888864
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.8e-18 Score=149.19 Aligned_cols=108 Identities=27% Similarity=0.421 Sum_probs=93.2
Q ss_pred eEEEEEEEeeccCccccCCCCCCCcEEEEEECCeec-----------ceeeeeeeCCCCCCeEceeEEEE-eec--CCCC
Q 038990 261 VGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERI-----------PAKKTSVKMKTLNPEWNEDFKLT-VKD--PETQ 326 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~-----------~~~~T~~~~~t~nP~wne~f~~~-v~~--~~~~ 326 (505)
.|.|.|+|++|++|+.+|..|.+||||++++.+... ..++|+++++|+||.|||+|.|. +.. ....
T Consensus 17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~ 96 (142)
T 1rh8_A 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence 589999999999999999999999999999987431 24689999999999999999997 532 2467
Q ss_pred EEEEEEEEcCCCCCCcccEEEEEECccCCCCCeeEEEEeccc
Q 038990 327 VLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 327 ~L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
.|.++|||+|..++|++||++.++++++..+.....|++|..
T Consensus 97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~ 138 (142)
T 1rh8_A 97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE 138 (142)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred EEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCc
Confidence 899999999999999999999999999887666678888764
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.8e-18 Score=146.08 Aligned_cols=112 Identities=28% Similarity=0.328 Sum_probs=93.5
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v 332 (505)
+....+.|.|+|++|+||+.++..| +||||++++.+.. ...++|+++++|+||+|||+|.|.+... ....|.|+|
T Consensus 19 y~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V 97 (142)
T 2dmg_A 19 HSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAV 97 (142)
T ss_dssp EETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEE
T ss_pred EeCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEE
Confidence 4456789999999999999999888 9999999996432 2457999999999999999999998532 245899999
Q ss_pred EEcCCCCC--CcccEEEEEECccCCCCCeeEEEEecccc
Q 038990 333 YDWEKVGT--HDKLGMQVVPLRSLTPNETKELTLDLVKN 369 (505)
Q Consensus 333 ~d~d~~~~--d~~lG~~~i~l~~l~~~~~~~~~l~l~~~ 369 (505)
||++.+++ |++||++.+++.++..+.....|++|...
T Consensus 98 ~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~ 136 (142)
T 2dmg_A 98 KNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED 136 (142)
T ss_dssp EECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCS
T ss_pred EECCCccccCCcEEEEEEEecccccccccccceeeccCC
Confidence 99998763 57999999999999877677778877653
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-17 Score=141.41 Aligned_cols=106 Identities=25% Similarity=0.432 Sum_probs=88.3
Q ss_pred CeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCC
Q 038990 260 PVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVG 339 (505)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~ 339 (505)
....|+|+|++|++|+++|..|.+||||++++++.. ..++|+++++|+||.|||+|.|.+... +.|.++|||+|..+
T Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~--~~l~~~v~d~d~~~ 79 (132)
T 3pyc_A 3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSG-QCHSTDTVKNTLDPKWNQHYDLYVGKT--DSITISVWNHKKIH 79 (132)
T ss_dssp SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTC-CEEECCCCSSCSSCEEEEEEEEEEETT--CCEEEEEEEGGGTT
T ss_pred CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCC-ceEECCccCCCCCCCccCEEEEEeCCC--CEEEEEEEECCCCC
Confidence 457899999999999999999999999999997632 347999999999999999999999764 34999999999887
Q ss_pred C---CcccEEEEEECccCC-CCCeeEEEEeccc
Q 038990 340 T---HDKLGMQVVPLRSLT-PNETKELTLDLVK 368 (505)
Q Consensus 340 ~---d~~lG~~~i~l~~l~-~~~~~~~~l~l~~ 368 (505)
+ |++||++.++++++. .......+++|..
T Consensus 80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~ 112 (132)
T 3pyc_A 80 KKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCK 112 (132)
T ss_dssp SSTTTTEEEEEEECHHHHHHHTTSCCEEEECBC
T ss_pred CCCCCCceEEEEEeHHHhhcccccCcEEEeeee
Confidence 6 899999999998872 2233345666654
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-16 Score=138.92 Aligned_cols=112 Identities=25% Similarity=0.455 Sum_probs=95.4
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCC-------
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRG------- 457 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~------- 457 (505)
..|+|++|++|+.. +.+||||++++++..++|++++++.||+|||+|.|.+..+ .+.|.++|||++..
T Consensus 19 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~d~d~~~~~~~~~ 96 (148)
T 3kwu_A 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS--SDRIKVRVLDEDDDIKSRVKQ 96 (148)
T ss_dssp EEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECST--TCEEEEEEEECCCSHHHHHHT
T ss_pred EEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCC--CCEEEEEEEECCCCccccccc
Confidence 48999999999864 5899999999999999999999999999999999999875 36899999999840
Q ss_pred -ccCCCCCccEEEEEeccccccCCEEeEEEEeCCC-----CCceEEEEEEEE
Q 038990 458 -LRLRSKESLGYVDINLHDVLHNGRLKEKYHLINS-----KNGAVQVEIKWK 503 (505)
Q Consensus 458 -~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~~~ 503 (505)
...+.+++||++.++|+++ .....+||+|... ..|+|+|+++|.
T Consensus 97 ~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 97 RFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRTDKSAVSGAIRLHISVE 146 (148)
T ss_dssp TTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred cccCCCCccEEEEEEEHHHC--cCCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence 0016799999999999998 3456899999843 369999999985
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.3e-17 Score=140.01 Aligned_cols=111 Identities=20% Similarity=0.334 Sum_probs=96.7
Q ss_pred eEEEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCC
Q 038990 387 VGKATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSK 463 (505)
Q Consensus 387 ~a~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d 463 (505)
...|+|++|++|+.. +.+||||+++++++.++|++++++.||+|||+|.|.+.+. .+.|.|+|||++. .+++
T Consensus 14 ~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~--~~~l~i~V~d~d~---~~~~ 88 (133)
T 2ep6_A 14 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI--HDVLEVTVFDEDG---DKPP 88 (133)
T ss_dssp EEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT--TCEEEEEEEEEET---TEEE
T ss_pred EEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCC--CCEEEEEEEECCC---CCCC
Confidence 348999999999864 5899999999999999999999999999999999999864 4689999999984 6678
Q ss_pred CccEEEEEeccccccCCEEeEEEEeCCC-----CCceEEEEEEEEe
Q 038990 464 ESLGYVDINLHDVLHNGRLKEKYHLINS-----KNGAVQVEIKWKA 504 (505)
Q Consensus 464 ~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~~~~ 504 (505)
++||++.++|.++..+. .+||+|.+. ..|+|+|+++|..
T Consensus 89 ~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 89 DFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLIY 132 (133)
T ss_dssp EECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred CeeEEEEEEHHHccCCC--ceEEEeecCCCCCccceEEEEEEEEEe
Confidence 99999999999997654 589999753 4799999999853
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-17 Score=143.28 Aligned_cols=112 Identities=21% Similarity=0.326 Sum_probs=94.2
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeec---CCCCEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKD---PETQVLQLH 331 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~---~~~~~L~v~ 331 (505)
+....+.|.|+|++|++|+.++..|.+||||++++.+.. ...++|+++++|+||+|||+|.|.+.. .....|.|+
T Consensus 16 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~ 95 (141)
T 1v27_A 16 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEIT 95 (141)
T ss_dssp EETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEE
T ss_pred EeCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEE
Confidence 445668999999999999999999999999999985422 335799999999999999999999532 235789999
Q ss_pred EEEcCCCCC--CcccEEEEEECccCCCCCeeEEEEecccc
Q 038990 332 VYDWEKVGT--HDKLGMQVVPLRSLTPNETKELTLDLVKN 369 (505)
Q Consensus 332 v~d~d~~~~--d~~lG~~~i~l~~l~~~~~~~~~l~l~~~ 369 (505)
|||++..++ |++||++.+++.++.... ...|++|...
T Consensus 96 V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~ 134 (141)
T 1v27_A 96 LWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQTH 134 (141)
T ss_dssp EEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCC
T ss_pred EEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECccc
Confidence 999999887 999999999999987654 6788888654
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=8.3e-17 Score=141.73 Aligned_cols=112 Identities=24% Similarity=0.371 Sum_probs=93.4
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC------eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG------EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~------~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~ 458 (505)
.+|+|++|++|+.. +.+||||++++.+ ..++|++++++.||+|||+|.|.+... ...|.|+|||++.
T Consensus 22 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~l~~~V~d~d~-- 97 (153)
T 3b7y_A 22 VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ--QHRLLFEVFDENR-- 97 (153)
T ss_dssp EEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT--TCEEEEEEEECCS--
T ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC--CCEEEEEEEECCC--
Confidence 48999999999863 5899999999974 456999999999999999999999764 4689999999984
Q ss_pred cCCCCCccEEEEEeccccccCCE------EeEEEEeCCC-----CCceEEEEEEEEe
Q 038990 459 RLRSKESLGYVDINLHDVLHNGR------LKEKYHLINS-----KNGAVQVEIKWKA 504 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~------~~~~~~L~~~-----~~G~i~l~~~~~~ 504 (505)
++++++||++.++|+++..+.. ..+||+|... ..|+|+|+++|.|
T Consensus 98 -~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 98 -LTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp -SSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred -CcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence 6789999999999999987542 1589999643 3799999999987
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=137.99 Aligned_cols=109 Identities=22% Similarity=0.324 Sum_probs=94.8
Q ss_pred EEEEEeeecCCCCCC--------------CCCCEEEEEEcCeE-EEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEE
Q 038990 388 GKATEYGAKDLEGKH--------------HNNPYAVVICRGEQ-KKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVK 452 (505)
Q Consensus 388 a~v~v~~a~~L~~~~--------------~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~ 452 (505)
.+|+|++|++|+..+ .+||||++++++.. .+|+++++|.||+|||+|+|.+.+. +.|.|+||
T Consensus 8 L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~---~~L~~~V~ 84 (136)
T 1gmi_A 8 LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG---RKIELAVF 84 (136)
T ss_dssp EEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE---CEEEEEEE
T ss_pred EEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC---CEEEEEEE
Confidence 479999999998532 29999999998766 5999999999999999999999764 68999999
Q ss_pred EccCCccCCCCCccEEEEEeccccccCC--EEeEEEEeCCCCCceEEEEEEEEe
Q 038990 453 SKRRGLRLRSKESLGYVDINLHDVLHNG--RLKEKYHLINSKNGAVQVEIKWKA 504 (505)
Q Consensus 453 d~~~~~~~~~d~~lG~~~i~L~~l~~~~--~~~~~~~L~~~~~G~i~l~~~~~~ 504 (505)
|++. .+++++||++.++|+++..+. ..+.||+|.. +|+|+|+++|.+
T Consensus 85 d~d~---~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~--~G~i~l~l~~~~ 133 (136)
T 1gmi_A 85 HDAP---IGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--EGKVYVIIDLSG 133 (136)
T ss_dssp ECCS---SSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--SCEEEEEEEEEE
T ss_pred eCCC---CCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC--CeEEEEEEEEEe
Confidence 9984 678999999999999998753 4589999974 899999999975
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.3e-17 Score=144.91 Aligned_cols=110 Identities=34% Similarity=0.532 Sum_probs=86.0
Q ss_pred cCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCee---cceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEE
Q 038990 258 KKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER---IPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYD 334 (505)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~---~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d 334 (505)
....|.|+|+|++|++|+.++..|.+||||++++++.. ...++|+++++++||.|||+|.|.+.. ....|.|+|||
T Consensus 4 ~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~-~~~~L~~~V~d 82 (176)
T 3m7f_B 4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLP-QRHRILFEVFD 82 (176)
T ss_dssp CTTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECT-TTCEEEEEEEE
T ss_pred CCCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcC-CCCEEEEEEEE
Confidence 34679999999999999999988999999999997522 134699999999999999999999974 45789999999
Q ss_pred cCCCCCCcccEEEEEECccCCCCCee-E-----EEEeccc
Q 038990 335 WEKVGTHDKLGMQVVPLRSLTPNETK-E-----LTLDLVK 368 (505)
Q Consensus 335 ~d~~~~d~~lG~~~i~l~~l~~~~~~-~-----~~l~l~~ 368 (505)
++.+++|++||++.++|.++..+... + .|+.|..
T Consensus 83 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~ 122 (176)
T 3m7f_B 83 ENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHP 122 (176)
T ss_dssp CC----CEEEEEEEEESCSCCBC------CCCCEEEECBC
T ss_pred CCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccc
Confidence 99999999999999999999876443 1 5777654
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-17 Score=144.45 Aligned_cols=112 Identities=22% Similarity=0.348 Sum_probs=94.3
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeecC-CCCEEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKDP-ETQVLQLHVY 333 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~~-~~~~L~v~v~ 333 (505)
+....|.|.|+|++|++|+..+ .|.+||||++++.+. ...+++|+++++|+||.|||+|.|.+... ....|.|+||
T Consensus 22 y~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~ 100 (153)
T 3fbk_A 22 IDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVW 100 (153)
T ss_dssp EEESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEE
T ss_pred EECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEE
Confidence 5567899999999999999999 689999999999543 23457999999999999999999998422 2356999999
Q ss_pred EcCCCCC-CcccEEEEEECccCCC-CCeeEEEEecccc
Q 038990 334 DWEKVGT-HDKLGMQVVPLRSLTP-NETKELTLDLVKN 369 (505)
Q Consensus 334 d~d~~~~-d~~lG~~~i~l~~l~~-~~~~~~~l~l~~~ 369 (505)
|+|..++ |++||++.+++.++.. +.....|++|...
T Consensus 101 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~ 138 (153)
T 3fbk_A 101 NRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE 138 (153)
T ss_dssp ECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCT
T ss_pred eCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCCh
Confidence 9998877 9999999999999985 6677889988653
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=8.1e-17 Score=142.79 Aligned_cols=112 Identities=34% Similarity=0.491 Sum_probs=93.6
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECC--eecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSG--ERIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~--~~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v 332 (505)
+....|.|.|+|++|+||+.+|..|.+||||++++.+ .....++|+++++++||.|||+|.|.+... ....|.|+|
T Consensus 20 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V 99 (159)
T 1tjx_A 20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV 99 (159)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEE
Confidence 4456789999999999999999889999999999964 233457999999999999999999998643 246799999
Q ss_pred EEcCCCCCCcccEEEEEECccC------------CCCCeeEEEEeccc
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSL------------TPNETKELTLDLVK 368 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l------------~~~~~~~~~l~l~~ 368 (505)
||+|.+++|++||++.+++..+ ..+.....|+.|..
T Consensus 100 ~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~ 147 (159)
T 1tjx_A 100 LDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 147 (159)
T ss_dssp EECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred EECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcC
Confidence 9999999999999999999854 23445667887754
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.7e-17 Score=138.90 Aligned_cols=99 Identities=31% Similarity=0.466 Sum_probs=85.6
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeecCC--CCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKDPE--TQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~~~--~~~L~v~v 332 (505)
+....|.|.|+|++|++|+..+..|.+||||++++.+. ...+++|++++++.||.|||+|.|.+.... ...|.++|
T Consensus 11 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V 90 (138)
T 3n5a_A 11 YNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITV 90 (138)
T ss_dssp EETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEE
T ss_pred EcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEE
Confidence 34567899999999999999998899999999999643 234578999999999999999999986432 36899999
Q ss_pred EEcCCCCCCcccEEEEEECccCC
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLT 355 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~ 355 (505)
||+|..++|++||++.++++++.
T Consensus 91 ~d~~~~~~~~~lG~~~i~l~~~~ 113 (138)
T 3n5a_A 91 MDKDKLSRNDVIGKIYLSWKSGP 113 (138)
T ss_dssp EECCSSSCCEEEEEEEESSSSCH
T ss_pred EECCCCCCCcEEEEEEEccccCC
Confidence 99999999999999999998753
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=142.06 Aligned_cols=98 Identities=34% Similarity=0.507 Sum_probs=86.1
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v 332 (505)
+....+.|.|+|++|++|+.++..|.+||||++++.+.. ...++|+++++|+||+|||+|.|.+... ....|.|+|
T Consensus 32 y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V 111 (166)
T 2cm5_A 32 YSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISV 111 (166)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred EECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEE
Confidence 455679999999999999999988999999999997632 3457999999999999999999998643 256899999
Q ss_pred EEcCCCCCCcccEEEEEECccC
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSL 354 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l 354 (505)
||+|..++|++||++.+++.++
T Consensus 112 ~d~d~~~~~~~iG~~~i~l~~~ 133 (166)
T 2cm5_A 112 WDYDIGKSNDYIGGCQLGISAK 133 (166)
T ss_dssp EECCSSSCCEEEEEEEEETTCC
T ss_pred EECCCCCCCcEEEeEEEecccC
Confidence 9999999999999999999975
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=141.08 Aligned_cols=97 Identities=32% Similarity=0.405 Sum_probs=79.5
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEEC--CeecceeeeeeeCCCCCCeEceeEEEEeecCC--CCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLS--GERIPAKKTSVKMKTLNPEWNEDFKLTVKDPE--TQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~--~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~--~~~L~v~v 332 (505)
+....+.|.|+|++|+||+.++..|.+||||++++. +....+++|+++++++||+|||+|.|.+.... ...|.|+|
T Consensus 25 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V 104 (153)
T 1w15_A 25 YQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLV 104 (153)
T ss_dssp EETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEE
T ss_pred EcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEE
Confidence 445678999999999999999988999999999994 33334579999999999999999999986542 46899999
Q ss_pred EEcCCCCCCcccEEEEEECcc
Q 038990 333 YDWEKVGTHDKLGMQVVPLRS 353 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~ 353 (505)
||+|.+++|++||++.+++++
T Consensus 105 ~d~d~~~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 105 LDSERGSRNEVIGRLVLGATA 125 (153)
T ss_dssp EECCTTSCCEEEEEEEESTTC
T ss_pred EeCCCCCCCcEEEEEEECCCC
Confidence 999999999999999999988
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-16 Score=143.51 Aligned_cols=106 Identities=21% Similarity=0.320 Sum_probs=87.5
Q ss_pred CCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCC
Q 038990 259 KPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKV 338 (505)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~ 338 (505)
...+.|+|+|++|++|+..+..+.+||||++++++. .++|+++++|+||+|||+|.|.+.. .+.|.|+|||+|.+
T Consensus 33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~---~~kT~v~~~tlnP~Wne~f~f~v~~--~~~L~~~V~D~d~~ 107 (173)
T 2nq3_A 33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQ---SKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTL 107 (173)
T ss_dssp SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTE---EEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSS
T ss_pred CCceEEEEEEEEeECCCCcccCCCCCeEEEEEECCE---EeEccccCCCCCCeECCEEEEEeCC--CCEEEEEEEECCCC
Confidence 357899999999999994444455999999999873 3699999999999999999999843 78899999999999
Q ss_pred CCCcccEEEEEECccCCCCC-----eeEEEEecccc
Q 038990 339 GTHDKLGMQVVPLRSLTPNE-----TKELTLDLVKN 369 (505)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~~~-----~~~~~l~l~~~ 369 (505)
++|++||++.+++.++..+. ....|++|...
T Consensus 108 ~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~ 143 (173)
T 2nq3_A 108 KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD 143 (173)
T ss_dssp SCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES
T ss_pred CCCceEEEEEEEHHHhcccCCCCcceeEEEEECccC
Confidence 99999999999999886432 12567777653
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-16 Score=135.19 Aligned_cols=104 Identities=23% Similarity=0.329 Sum_probs=86.3
Q ss_pred eEEEEEeeecCCCC--CCCCCCEEEEEE-----cCeEEEeecccCCCCCccCceEEEE-eeCCC-CCCeEEEEEEEccCC
Q 038990 387 VGKATEYGAKDLEG--KHHNNPYAVVIC-----RGEQKKTKMIKKCRDPIWNEEFQFD-FEEAP-LKEKIHIEVKSKRRG 457 (505)
Q Consensus 387 ~a~v~v~~a~~L~~--~~~~dpyv~v~~-----~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~-~~~~l~i~V~d~~~~ 457 (505)
...|+|.+|++|+. .+.+||||++++ ....++|+++++|.||+|||+|.|. +.... ....|.|+|||++.
T Consensus 21 ~L~V~V~~a~~L~~~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d~- 99 (134)
T 2b3r_A 21 TLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAES- 99 (134)
T ss_dssp EEEEEEEEEECCCCTTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECCS-
T ss_pred EEEEEEEEeeCCCCCCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECCC-
Confidence 34899999999986 358999999999 3456799999999999999999999 75322 23589999999984
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEeCCCCC
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKN 493 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~ 493 (505)
++++++||++.++|+++..+....+||+|.+.+.
T Consensus 100 --~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~~ 133 (134)
T 2b3r_A 100 --LRENFFLGGITLPLKDFNLSKETVKWYQLTAATY 133 (134)
T ss_dssp --SSCCEEEEEEEEEGGGSCTTSCEEEEEECBC---
T ss_pred --CCCCcEEEEEEEEhhhccCCCCcceeEECCCccC
Confidence 6788999999999999988777899999987544
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.6e-16 Score=139.77 Aligned_cols=113 Identities=26% Similarity=0.387 Sum_probs=91.2
Q ss_pred eEEEEEeeecCCCCC---CCCCCEEEEEEcC------eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCC
Q 038990 387 VGKATEYGAKDLEGK---HHNNPYAVVICRG------EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRG 457 (505)
Q Consensus 387 ~a~v~v~~a~~L~~~---~~~dpyv~v~~~~------~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~ 457 (505)
...|+|++|++|+.. +.+||||++++.+ ..++|++++++.||+|||.|.|.+... ...|.|+|||++.
T Consensus 9 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~--~~~L~~~V~d~d~- 85 (176)
T 3m7f_B 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ--RHRILFEVFDENR- 85 (176)
T ss_dssp EEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTT--TCEEEEEEEECC--
T ss_pred EEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCC--CCEEEEEEEECCC-
Confidence 358999999999763 5899999999975 457999999999999999999999754 3689999999984
Q ss_pred ccCCCCCccEEEEEeccccccCCEE-e-----EEEEeCCC-----CCceEEEEEEEEe
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRL-K-----EKYHLINS-----KNGAVQVEIKWKA 504 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~-~-----~~~~L~~~-----~~G~i~l~~~~~~ 504 (505)
++.+++||++.++|.++...... . +||+|... ..|+|+|++.|.|
T Consensus 86 --~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p 141 (176)
T 3m7f_B 86 --LTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 141 (176)
T ss_dssp -----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred --CCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEe
Confidence 67899999999999999876432 2 79999753 2799999999987
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.66 E-value=6.3e-16 Score=132.50 Aligned_cols=110 Identities=21% Similarity=0.376 Sum_probs=91.7
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC--eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCC
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG--EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRS 462 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~ 462 (505)
.+|+|++|++|+.. +.+||||++++++ ..++|+++++|.||+|||+|.|.+.+. +.|.|+|||++. +++
T Consensus 7 L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~l~~~v~d~d~---~~~ 80 (132)
T 3pyc_A 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT---DSITISVWNHKK---IHK 80 (132)
T ss_dssp EEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT---CCEEEEEEEGGG---TTS
T ss_pred EEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC---CEEEEEEEECCC---CCC
Confidence 37999999999763 5799999999975 667999999999999999999999775 359999999984 443
Q ss_pred ---CCccEEEEEecccccc-CCEEeEEEEeCCC-------CCceEEEEEEEE
Q 038990 463 ---KESLGYVDINLHDVLH-NGRLKEKYHLINS-------KNGAVQVEIKWK 503 (505)
Q Consensus 463 ---d~~lG~~~i~L~~l~~-~~~~~~~~~L~~~-------~~G~i~l~~~~~ 503 (505)
|++||++.++++++.. .....+|++|... ..|+|++++.++
T Consensus 81 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~r 132 (132)
T 3pyc_A 81 KQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQTR 132 (132)
T ss_dssp STTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEEC
T ss_pred CCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEcC
Confidence 7999999999998844 3344688999754 279999999874
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-16 Score=138.94 Aligned_cols=105 Identities=20% Similarity=0.350 Sum_probs=89.7
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCcc
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLR 459 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~ 459 (505)
..|+|++|++|+.. +.+||||++++.+ ..++|++++++.||+|||+|.|.+........|.|+|||++.
T Consensus 33 L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~--- 109 (149)
T 1a25_A 33 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL--- 109 (149)
T ss_dssp EEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS---
T ss_pred EEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC---
Confidence 48999999999864 5789999999973 467999999999999999999999765444689999999984
Q ss_pred CCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceE
Q 038990 460 LRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAV 496 (505)
Q Consensus 460 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i 496 (505)
++++++||++.++|.++..+ ..++||+|.+...|++
T Consensus 110 ~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~g~~ 145 (149)
T 1a25_A 110 TSRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEGEY 145 (149)
T ss_dssp SSCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHHTT
T ss_pred CCCCCEEEEEEEEHHHhCcC-ccCCeEEccCCCCCcc
Confidence 67899999999999999876 4689999987666654
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=9.4e-16 Score=137.51 Aligned_cols=112 Identities=22% Similarity=0.310 Sum_probs=94.9
Q ss_pred EEEEEeeecCCC-CC--CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCC
Q 038990 388 GKATEYGAKDLE-GK--HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKE 464 (505)
Q Consensus 388 a~v~v~~a~~L~-~~--~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~ 464 (505)
.+|+|.+|++|+ .. +.+||||++++++..++|++++++.||+|||+|.|.+.. .+.|.|+|||++. ++.++
T Consensus 38 L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~---~~~L~~~V~D~d~---~~~dd 111 (173)
T 2nq3_A 38 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP---VSKLHFRVWSHQT---LKSDV 111 (173)
T ss_dssp EEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT---TCEEEEEEEECCS---SSCCE
T ss_pred EEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC---CCEEEEEEEECCC---CCCCc
Confidence 489999999998 32 359999999999988899999999999999999999843 4689999999984 67899
Q ss_pred ccEEEEEeccccccCC-----EEeEEEEeCCC-----CCceEEEEEEEEeC
Q 038990 465 SLGYVDINLHDVLHNG-----RLKEKYHLINS-----KNGAVQVEIKWKAI 505 (505)
Q Consensus 465 ~lG~~~i~L~~l~~~~-----~~~~~~~L~~~-----~~G~i~l~~~~~~~ 505 (505)
+||++.++|.++..+. ....|++|... ..|+|.+.+.+.++
T Consensus 112 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~ 162 (173)
T 2nq3_A 112 LLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL 162 (173)
T ss_dssp EEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred eEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeec
Confidence 9999999999987632 23579999753 26999999998764
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-15 Score=130.35 Aligned_cols=103 Identities=14% Similarity=0.109 Sum_probs=86.4
Q ss_pred eEEEEEeeecCCCCCCCCCCEEEEEEcC----eEEEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccCCccCC
Q 038990 387 VGKATEYGAKDLEGKHHNNPYAVVICRG----EQKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRRGLRLR 461 (505)
Q Consensus 387 ~a~v~v~~a~~L~~~~~~dpyv~v~~~~----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~ 461 (505)
...|+|++|++....+.+||||++++.. ..++|+++++|.||+|||+|.|.+..... ...|.|+|||++. ++
T Consensus 27 ~L~V~v~~a~~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~---~~ 103 (138)
T 1wfm_A 27 ELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR---FS 103 (138)
T ss_dssp EEEEEEEEEECCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS---SC
T ss_pred EEEEEEEEEEcCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCC---CC
Confidence 3489999999766667899999999942 24699999999999999999999876543 3589999999984 78
Q ss_pred CCCccEEEEEeccccccCCEEeEEEEeCCCC
Q 038990 462 SKESLGYVDINLHDVLHNGRLKEKYHLINSK 492 (505)
Q Consensus 462 ~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~ 492 (505)
++++||++.++|.++.......+||+|....
T Consensus 104 ~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~~ 134 (138)
T 1wfm_A 104 RHSVAGELRLGLDGTSVPLGAAQWGELKTSG 134 (138)
T ss_dssp TTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred CCcEEEEEEEEcccccCcccccceeeCcCCC
Confidence 8999999999999997655668999998754
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=8.6e-15 Score=153.03 Aligned_cols=164 Identities=23% Similarity=0.290 Sum_probs=121.5
Q ss_pred cceEEEEecCCc-eEEEEeeEecccccc-chhhHHHHHHHHHHHHHhhccC-----C--CCcccccccC--------C--
Q 038990 193 FAGIAVSLMEKP-EVDFGLKLVGGDMMA-IPGLYQFIQETIRNQISALYLW-----P--QPLEIPILDG--------S-- 253 (505)
Q Consensus 193 ~~~~~~sf~~~P-~~d~~~~~~g~~i~~-iP~l~~~i~~~i~~~l~~~~v~-----P--~~~~~~l~~~--------~-- 253 (505)
+..+.=|+...| -|++.+.|+ -++.. -+.-...++.++.+++.+.-.+ | |.. .++... .
T Consensus 304 ~~~W~~Sv~~~P~~I~~~l~PI-~~Lv~~~~~kr~nLk~Ai~~Yl~e~~~c~~C~~PC~nn~-~~l~g~~C~C~C~~~~~ 381 (540)
T 3nsj_A 304 FSTWTASLPSNPGLVDYSLEPL-HTLLEEQNPKREALRQAISHYIMSRARWQNCSRPCRSGQ-HKSSHDSCQCECQDSKV 381 (540)
T ss_dssp HHHHHHHTTTSCEEEEEEEEEG-GGGSCTTCTHHHHHHHHHHHHHHHTCBCCCTTSCCBTTE-EECSSCTTCEEESCTTT
T ss_pred HHHHHHHHhhCCceEEEEEEEH-HHhcCCcHHHHHHHHHHHHHHHHhcCchhhhcccccCCC-ccCCCCceEeeCCCCCC
Confidence 344444555667 459999998 44432 3455678888888888877655 2 111 122111 0
Q ss_pred ----cCCCcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeec-CCCCEE
Q 038990 254 ----LGAIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKD-PETQVL 328 (505)
Q Consensus 254 ----~~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~-~~~~~L 328 (505)
.-......|.|+|+|++|++|+. |..|++||||++++++.. .||+++++++||+|||+|.|.+.. ...+.|
T Consensus 382 t~~~~C~~~~~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~---~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L 457 (540)
T 3nsj_A 382 TNQDCCPRQRGLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQE---FRTGVVWNNNNPRWTDKMDFENVLLSTGGPL 457 (540)
T ss_dssp BCGGGCBSSTTEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEE---EECCCBCSCSSCBCCCCEEEEEEETTTCCCE
T ss_pred cccccccccCcccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEe---eeeeeecCCCCCCCCeEEEEEEecCCCCCEE
Confidence 01234458999999999999998 988999999999999754 699999999999999999998653 457889
Q ss_pred EEEEEEcCCCCCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 329 QLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 329 ~v~v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
+|+|||+|..++||+||++.++|.. + .++.|..|
T Consensus 458 ~~~V~D~D~~~~dD~LG~~~~~L~~---g-~~~~~~~l 491 (540)
T 3nsj_A 458 RVQVWDADYGWDDDLLGSCDRSPHS---G-FHEVTCEL 491 (540)
T ss_dssp EEEEEECCSSSCCEEEEEEEECCCS---E-EEEEEEEC
T ss_pred EEEEEECCCCCCCCEEEEEEEEeeC---C-cEEEEEEc
Confidence 9999999999999999999999872 2 34556653
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-15 Score=133.54 Aligned_cols=104 Identities=20% Similarity=0.356 Sum_probs=87.2
Q ss_pred EEEEEeeecCCCCC--CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccC
Q 038990 388 GKATEYGAKDLEGK--HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRL 460 (505)
Q Consensus 388 a~v~v~~a~~L~~~--~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~ 460 (505)
..|+|.+|++|+.. +.+||||++++.. ..++|+++++|.||+|||+|.|.+........|.|+|||++. +
T Consensus 29 L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~---~ 105 (153)
T 3fbk_A 29 LLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRAS---Q 105 (153)
T ss_dssp EEEEEEEEESCCCCSSSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCS---S
T ss_pred EEEEEEEeeCCCCCCCCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCC---C
Confidence 48999999999764 5899999999943 457999999999999999999999654445679999999984 5
Q ss_pred CC-CCccEEEEEecccccc-CCEEeEEEEeCCCCCc
Q 038990 461 RS-KESLGYVDINLHDVLH-NGRLKEKYHLINSKNG 494 (505)
Q Consensus 461 ~~-d~~lG~~~i~L~~l~~-~~~~~~~~~L~~~~~G 494 (505)
++ +++||++.++|+++.. +....+||+|.+...|
T Consensus 106 ~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~g 141 (153)
T 3fbk_A 106 SRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLG 141 (153)
T ss_dssp GGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTTGG
T ss_pred CCCCcEEEEEEEEHHHhcCCCCccccEEECCChhhc
Confidence 55 8999999999999985 5677899999876544
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-15 Score=133.02 Aligned_cols=101 Identities=20% Similarity=0.273 Sum_probs=86.5
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEc---CeEEEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccCCccC
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICR---GEQKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRRGLRL 460 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~---~~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~ 460 (505)
..|+|++|++|+.. +.+||||++++. ...++|++++++.||+|||+|.|.+..... ...|.|+|||++. +
T Consensus 44 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~---~ 120 (152)
T 1rsy_A 44 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR---F 120 (152)
T ss_dssp EEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS---S
T ss_pred EEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCC---C
Confidence 48999999999864 578999999994 346799999999999999999999864322 3589999999984 6
Q ss_pred CCCCccEEEEEeccccccCCEEeEEEEeCCC
Q 038990 461 RSKESLGYVDINLHDVLHNGRLKEKYHLINS 491 (505)
Q Consensus 461 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 491 (505)
+++++||++.++|+++..+....+||+|.+.
T Consensus 121 ~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 151 (152)
T 1rsy_A 121 SKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 151 (152)
T ss_dssp SCCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred CCCcEEEEEEEEchhccCCCCcceEEECCCC
Confidence 7899999999999999887778999999764
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.2e-15 Score=126.95 Aligned_cols=88 Identities=20% Similarity=0.312 Sum_probs=73.2
Q ss_pred CeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeee-CCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCC
Q 038990 260 PVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVK-MKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKV 338 (505)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~-~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~ 338 (505)
+.+.|.|+|++|++++. .|.+||||+++ . +. .+|+++ .++.||.|||+|.|.+.+. ...|.++|||+| .
T Consensus 3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~-~-~~---~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~ 72 (131)
T 2cjt_A 3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLK-V-QN---VKSTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-L 72 (131)
T ss_dssp CCEEEEEEEEEEECSSC---GGGCEEEEEEE-E-TT---EEEECCCEESSSCEEEEEEEEEECCC-SSEEEEEEEECC-S
T ss_pred cceEEEEEEEEeECCCC---CCCcCeEEEEE-e-cC---EEEeEecCCCCCceECCEEEEEEeCC-CCeEEEEEEECC-C
Confidence 56999999999998853 57899999999 2 11 244444 4799999999999999764 467999999999 8
Q ss_pred CCCcccEEEEEECccCCCC
Q 038990 339 GTHDKLGMQVVPLRSLTPN 357 (505)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~~ 357 (505)
++|++||++.++|+++...
T Consensus 73 ~~dd~iG~~~i~l~~l~~~ 91 (131)
T 2cjt_A 73 IWDTMVGTVWIPLRTIRQS 91 (131)
T ss_dssp SCEEEEEEEEEEGGGSCBC
T ss_pred CCCCeEEEEEEEHHHhhhc
Confidence 8999999999999998654
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.5e-15 Score=129.31 Aligned_cols=104 Identities=28% Similarity=0.428 Sum_probs=85.5
Q ss_pred eEEEEEeeecCCCCC---CCCCCEEEEEEc-----CeEEEeecccCCCCCccCceEEEEeeC-CC-CCCeEEEEEEEccC
Q 038990 387 VGKATEYGAKDLEGK---HHNNPYAVVICR-----GEQKKTKMIKKCRDPIWNEEFQFDFEE-AP-LKEKIHIEVKSKRR 456 (505)
Q Consensus 387 ~a~v~v~~a~~L~~~---~~~dpyv~v~~~-----~~~~kT~v~~~t~nP~wne~f~f~v~~-~~-~~~~l~i~V~d~~~ 456 (505)
...|+|++|++|+.. +.+||||++++. ...++|++++++.||+|||+|.|.+.. .. ....|.|+|||++.
T Consensus 22 ~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~ 101 (141)
T 1v27_A 22 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQAR 101 (141)
T ss_dssp EEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCS
T ss_pred EEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCC
Confidence 348999999999864 578999999993 456799999999999999999999532 21 23589999999985
Q ss_pred CccCCC--CCccEEEEEeccccccCCEEeEEEEeCCCCCc
Q 038990 457 GLRLRS--KESLGYVDINLHDVLHNGRLKEKYHLINSKNG 494 (505)
Q Consensus 457 ~~~~~~--d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G 494 (505)
++. +++||++.++|.++.... ..+||+|.....|
T Consensus 102 ---~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~~g 137 (141)
T 1v27_A 102 ---VREEESEFLGEILIELETALLDD-EPHWYKLQTHDSG 137 (141)
T ss_dssp ---SSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCSSC
T ss_pred ---CcCCCCceEEEEEEEccccCCCC-CCceEECcccccC
Confidence 554 899999999999987755 6899999876555
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.7e-15 Score=128.56 Aligned_cols=102 Identities=22% Similarity=0.253 Sum_probs=85.8
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEc---CeEEEeecccCCCCCccCceEEEEeeCC--CCCCeEEEEEEEccCCcc
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICR---GEQKKTKMIKKCRDPIWNEEFQFDFEEA--PLKEKIHIEVKSKRRGLR 459 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~---~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~~l~i~V~d~~~~~~ 459 (505)
..|+|++|++|+.. +.+||||++++. ...++|++++++.||+|||+|.|.+... .....|.|+|||++.
T Consensus 28 L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~--- 104 (141)
T 2d8k_A 28 LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDR--- 104 (141)
T ss_dssp EEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCS---
T ss_pred EEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCC---
Confidence 48999999999864 579999999995 3467999999999999999999985321 123589999999984
Q ss_pred CCCCCccEEEEEeccccccCCEEeEEEEeCCCC
Q 038990 460 LRSKESLGYVDINLHDVLHNGRLKEKYHLINSK 492 (505)
Q Consensus 460 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~ 492 (505)
++++++||++.++|.++..+.....||+|...+
T Consensus 105 ~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~ 137 (141)
T 2d8k_A 105 FSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG 137 (141)
T ss_dssp SSSCEEEEEEEEETTTSCTTSCEEEEECCEECC
T ss_pred CCCCcEEEEEEEEhhhhcCCCCccEEEECcCCC
Confidence 678999999999999998877778999998654
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-15 Score=131.97 Aligned_cols=103 Identities=17% Similarity=0.277 Sum_probs=87.1
Q ss_pred eEEEEEeeecCCCC----CCCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccC
Q 038990 387 VGKATEYGAKDLEG----KHHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRR 456 (505)
Q Consensus 387 ~a~v~v~~a~~L~~----~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~ 456 (505)
...|+|++|++|+. .+.+||||++++.. ..++|+++++|.||+|||+|.|.+..... ...|.|+|||++.
T Consensus 24 ~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~ 103 (148)
T 3fdw_A 24 SLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGR 103 (148)
T ss_dssp EEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECG
T ss_pred EEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCC
Confidence 34899999999984 35799999999963 36799999999999999999999876543 3479999999984
Q ss_pred CccCCCCCccEEEEEeccccccCCEEeEEEEeCCCC
Q 038990 457 GLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSK 492 (505)
Q Consensus 457 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~ 492 (505)
++++++||++.++|+++..+....+||+|...+
T Consensus 104 ---~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~ 136 (148)
T 3fdw_A 104 ---FGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI 136 (148)
T ss_dssp ---GGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC-
T ss_pred ---CcCCcEEEEEEEEcccccccCCccceEECcCcc
Confidence 678999999999999998776678999998653
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.4e-15 Score=129.77 Aligned_cols=100 Identities=20% Similarity=0.289 Sum_probs=86.1
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEE---cCeEEEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccCCccC
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVIC---RGEQKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRRGLRL 460 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~---~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~ 460 (505)
..|+|++|++|+.. +.+||||++++ +...++|++++++.||+|||+|.|.+..... ...|.|+|||++. +
T Consensus 36 L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~---~ 112 (143)
T 3f04_A 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR---F 112 (143)
T ss_dssp EEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS---S
T ss_pred EEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCC---C
Confidence 48999999999874 58999999999 3446799999999999999999999864322 3589999999984 6
Q ss_pred CCCCccEEEEEeccccccCCEEeEEEEeCC
Q 038990 461 RSKESLGYVDINLHDVLHNGRLKEKYHLIN 490 (505)
Q Consensus 461 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 490 (505)
+++++||++.++|+++..+....+||+|..
T Consensus 113 ~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 142 (143)
T 3f04_A 113 SKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp SCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred CCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence 789999999999999988878899999964
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.57 E-value=5.2e-15 Score=126.12 Aligned_cols=99 Identities=28% Similarity=0.428 Sum_probs=79.2
Q ss_pred eEEEEEeeecCCCCC---CCCCCEEEEEE-----cCeEEEeecccCCCCCccCceEEEEeeCC-C-CCCeEEEEEEEccC
Q 038990 387 VGKATEYGAKDLEGK---HHNNPYAVVIC-----RGEQKKTKMIKKCRDPIWNEEFQFDFEEA-P-LKEKIHIEVKSKRR 456 (505)
Q Consensus 387 ~a~v~v~~a~~L~~~---~~~dpyv~v~~-----~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~-~~~~l~i~V~d~~~ 456 (505)
...|+|.+|++|+.. +.+||||++++ +...++|++++++.||+|||+|.|.+... . ....|.|+|||++.
T Consensus 19 ~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 98 (129)
T 2bwq_A 19 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQAR 98 (129)
T ss_dssp EEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC--
T ss_pred EEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEECCc
Confidence 348999999999864 57899999999 34567999999999999999999995321 1 23589999999984
Q ss_pred CccCCC--CCccEEEEEeccccccCCEEeEEEEeC
Q 038990 457 GLRLRS--KESLGYVDINLHDVLHNGRLKEKYHLI 489 (505)
Q Consensus 457 ~~~~~~--d~~lG~~~i~L~~l~~~~~~~~~~~L~ 489 (505)
.+. +++||++.++|.++.... ..+||+|+
T Consensus 99 ---~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq 129 (129)
T 2bwq_A 99 ---VREEESEFLGEILIELETALLDD-EPHWYKLQ 129 (129)
T ss_dssp --------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred ---CcCcCCceeEEEEEEccccCCCc-CCccEECc
Confidence 555 899999999999988765 68999984
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-15 Score=133.93 Aligned_cols=100 Identities=18% Similarity=0.214 Sum_probs=84.5
Q ss_pred eEEEEEeeecCCCCC---CCCCCEEEEEEcC---e---EEEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccC
Q 038990 387 VGKATEYGAKDLEGK---HHNNPYAVVICRG---E---QKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRR 456 (505)
Q Consensus 387 ~a~v~v~~a~~L~~~---~~~dpyv~v~~~~---~---~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~ 456 (505)
...|.|++|++|+.. +.+||||++++.+ . ++||+++++|.||+|||+|.|.+..... ...|.|+|||++.
T Consensus 44 ~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d~ 123 (155)
T 2z0u_A 44 QFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDR 123 (155)
T ss_dssp EEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEECT
T ss_pred EEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEECCC
Confidence 348999999999753 6899999999965 2 5799999999999999999999865322 3489999999984
Q ss_pred CccCCCCCccEEEEEecccccc-CCEEeEEEEeC
Q 038990 457 GLRLRSKESLGYVDINLHDVLH-NGRLKEKYHLI 489 (505)
Q Consensus 457 ~~~~~~d~~lG~~~i~L~~l~~-~~~~~~~~~L~ 489 (505)
++++++||++.++|+++.. .....+||+|.
T Consensus 124 ---~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 124 ---SHLEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp ---TSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred ---CCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 7789999999999999964 45678999985
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-14 Score=121.47 Aligned_cols=114 Identities=17% Similarity=0.300 Sum_probs=100.7
Q ss_pred ceE-EEEEeeecCCCCCCCCCCEEEEEEcCeEEEeeccc-CCCCCccCceEEEEeeCCCC-CCeEEEEEEEccCCccCCC
Q 038990 386 EVG-KATEYGAKDLEGKHHNNPYAVVICRGEQKKTKMIK-KCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRRGLRLRS 462 (505)
Q Consensus 386 ~~a-~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~ 462 (505)
.|+ +|++.+|.+|++ .+|||+++.+.+.++||++++ ++.||+|||.|+|.+..+.. ++.|.++|+|+++ +++
T Consensus 20 ~msL~V~l~~a~~Lpg--~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~---v~~ 94 (144)
T 3l9b_A 20 HMALIVHLKTVSELRG--RADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSK---VFS 94 (144)
T ss_dssp CEEEEEEEEEEESCCS--CEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECT---TSC
T ss_pred cEEEEEEEEEecCCCC--CCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcc---ccC
Confidence 565 999999999996 799999999999999999998 69999999999999987532 3489999999985 789
Q ss_pred CCccEEEEEeccccccCCEEeEEEEeCCCC----CceEEEEEEEEe
Q 038990 463 KESLGYVDINLHDVLHNGRLKEKYHLINSK----NGAVQVEIKWKA 504 (505)
Q Consensus 463 d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~----~G~i~l~~~~~~ 504 (505)
+.+||++.++|.++...+.+.-+-+|.+.. .+.|.+++.|.|
T Consensus 95 nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~I~l~l~Y~p 140 (144)
T 3l9b_A 95 NKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQA 140 (144)
T ss_dssp CEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred CCEEEEEEEEhHHhccCCeEEEeecccCCCCCccccEEEEEEEecC
Confidence 999999999999999988776677787653 589999999987
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.9e-15 Score=129.38 Aligned_cols=101 Identities=21% Similarity=0.261 Sum_probs=84.6
Q ss_pred EEEEEeeecCCCCC----------CCCCCEEEEEEcC---eEEEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEE
Q 038990 388 GKATEYGAKDLEGK----------HHNNPYAVVICRG---EQKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKS 453 (505)
Q Consensus 388 a~v~v~~a~~L~~~----------~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d 453 (505)
..|+|++|++|+.. +.+||||++++.. ..++|++++++.||+|||+|.|.+..... ...|.|+|||
T Consensus 28 L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d 107 (147)
T 2enp_A 28 LTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVD 107 (147)
T ss_dssp EEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEEC
T ss_pred EEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEE
Confidence 48999999999863 3799999999963 45799999999999999999999864321 2489999999
Q ss_pred ccCCccCCCCCccEEEEEeccccccCCEEeEEEEeCCC
Q 038990 454 KRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINS 491 (505)
Q Consensus 454 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 491 (505)
++. ++++++||++.++|.++........||.|...
T Consensus 108 ~d~---~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 142 (147)
T 2enp_A 108 FDK---FSRHCVIGKVSVPLCEVDLVKGGHWWKALIPS 142 (147)
T ss_dssp CST---TCCSCCCEEEEEETTTSCTTTCCCEEECCBCC
T ss_pred CCC---CcCCcEEEEEEEechhcCCCCCccEEEEeecC
Confidence 984 67889999999999999876666788888754
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4e-15 Score=160.20 Aligned_cols=108 Identities=28% Similarity=0.428 Sum_probs=97.0
Q ss_pred CCeEEEEEEEeeccCccc---cCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEc
Q 038990 259 KPVGILHVKVIRAIRLLK---MDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDW 335 (505)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~---~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~ 335 (505)
.+.|.|+|+|++|++|+. +|..|.+||||++++++....++||+++++++||+|||+|.|.+.....+.|+|+|||+
T Consensus 15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~ 94 (749)
T 1cjy_A 15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA 94 (749)
T ss_dssp CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEEC
T ss_pred CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEEC
Confidence 478999999999999999 88889999999999987544557999999999999999999999876778899999999
Q ss_pred CCCCCCcccEEEEEECccCCCCCeeEEEEecc
Q 038990 336 EKVGTHDKLGMQVVPLRSLTPNETKELTLDLV 367 (505)
Q Consensus 336 d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~ 367 (505)
|.++ |++||++.+++.++..+..+..|++|.
T Consensus 95 D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~ 125 (749)
T 1cjy_A 95 NYVM-DETLGTATFTVSSMKVGEKKEVPFIFN 125 (749)
T ss_dssp CSSS-CEEEEEECCBSTTSCTTCCCCEEEEET
T ss_pred CCCC-CceeEEEEEEHHHcCCCCceEEEEecC
Confidence 9998 999999999999998887777777764
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-15 Score=132.08 Aligned_cols=102 Identities=22% Similarity=0.324 Sum_probs=85.4
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcCe--------------EEEeecccCCCCCccCceEEEE-eeCCC-CCCeEE
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRGE--------------QKKTKMIKKCRDPIWNEEFQFD-FEEAP-LKEKIH 448 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~~--------------~~kT~v~~~t~nP~wne~f~f~-v~~~~-~~~~l~ 448 (505)
..|+|++|++|+.. +.+||||++++.+. .++|+++++|.||+|||.|.|. +.... ....|.
T Consensus 20 L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~ 99 (142)
T 1rh8_A 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLE 99 (142)
T ss_dssp EEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEE
T ss_pred EEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCCEEE
Confidence 47999999999864 57899999999763 3599999999999999999997 54221 235899
Q ss_pred EEEEEccCCccCCCCCccEEEEEeccccccCCEEeEEEEeCCCC
Q 038990 449 IEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSK 492 (505)
Q Consensus 449 i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~ 492 (505)
|+|||++. ++++++||++.++|+++.......+||+|.+.+
T Consensus 100 i~V~d~d~---~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~ 140 (142)
T 1rh8_A 100 VTVWDYDR---FSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT 140 (142)
T ss_dssp EEEEEECS---SSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred EEEEECCC---CCCCceEEEEEEeccccccCCCCCeEEECCccC
Confidence 99999984 678999999999999998766678999998754
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.55 E-value=4e-15 Score=130.89 Aligned_cols=109 Identities=19% Similarity=0.239 Sum_probs=83.7
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEc--Ce---EEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICR--GE---QKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~--~~---~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~ 458 (505)
..|+|++|++|+.. +.+||||++++. +. +++|++++++.||+|||+|.|.+...... ..|.|+|||++.
T Consensus 32 L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~-- 109 (153)
T 1w15_A 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSER-- 109 (153)
T ss_dssp EEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCT--
T ss_pred EEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCCC--
Confidence 48999999999863 578999999994 33 46999999999999999999999775443 479999999984
Q ss_pred cCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEEEe
Q 038990 459 RLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWKA 504 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~~~ 504 (505)
++++++||++.+++++ ......+||+|.+.+...+. +|.+
T Consensus 110 -~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~p~~~~~---~Wh~ 149 (153)
T 1w15_A 110 -GSRNEVIGRLVLGATA--EGSGGGHWKEICDFPRRQIA---KWHM 149 (153)
T ss_dssp -TSCCEEEEEEEESTTC--CSHHHHHHHHHHHSTTCCEE---EEEE
T ss_pred -CCCCcEEEEEEECCCC--CchHHHHHHHHHhCCCCeee---eccc
Confidence 6789999999999988 22334567776655444443 5554
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-14 Score=130.46 Aligned_cols=99 Identities=22% Similarity=0.303 Sum_probs=85.4
Q ss_pred EEEEEeeecCCCCC----CCCCCEEEEEEcCe-----EEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEE-EccCC
Q 038990 388 GKATEYGAKDLEGK----HHNNPYAVVICRGE-----QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVK-SKRRG 457 (505)
Q Consensus 388 a~v~v~~a~~L~~~----~~~dpyv~v~~~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~-d~~~~ 457 (505)
..|+|++|++|+.. +.+||||++++... .++|+++++|.||+|||+|.|.+... ...|.|+|| |++.
T Consensus 32 L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~L~~~V~~d~d~- 108 (171)
T 2q3x_A 32 LEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQ--GKVLQVIVWGDYGR- 108 (171)
T ss_dssp EEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCT--TEEEEEEEEEECST-
T ss_pred EEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCC--CCEEEEEEEEcCCC-
Confidence 48999999999853 57999999998642 56999999999999999999998543 468999999 8874
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEeCCC
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHLINS 491 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 491 (505)
++++++||++.++|+++..+....+||+|...
T Consensus 109 --~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 109 --MDHKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp --TCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred --CCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 67889999999999999877778999999864
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.6e-14 Score=136.65 Aligned_cols=115 Identities=19% Similarity=0.280 Sum_probs=98.2
Q ss_pred eEEEEEeeecCCCCC---CCCCCEEEEEEcC---eEEEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccCCcc
Q 038990 387 VGKATEYGAKDLEGK---HHNNPYAVVICRG---EQKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRRGLR 459 (505)
Q Consensus 387 ~a~v~v~~a~~L~~~---~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~ 459 (505)
...|+|++|++|+.. +.+||||++++++ ..++|++++++.||+|||+|.|.+..... ...|.|+|||++.
T Consensus 20 ~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~--- 96 (284)
T 2r83_A 20 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDR--- 96 (284)
T ss_dssp EEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCS---
T ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCC---
Confidence 348999999999864 5899999999964 35799999999999999999999875433 3589999999984
Q ss_pred CCCCCccEEEEEeccccccCCEEeEEEEeCCC------CCceEEEEEEEEe
Q 038990 460 LRSKESLGYVDINLHDVLHNGRLKEKYHLINS------KNGAVQVEIKWKA 504 (505)
Q Consensus 460 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~------~~G~i~l~~~~~~ 504 (505)
++.+++||++.++|.++..+....+||+|... ..|+|.++++|.|
T Consensus 97 ~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p 147 (284)
T 2r83_A 97 FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVP 147 (284)
T ss_dssp SSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEET
T ss_pred CCCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEecC
Confidence 67899999999999999888888999999753 3699999999875
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.53 E-value=5.7e-15 Score=131.79 Aligned_cols=87 Identities=21% Similarity=0.278 Sum_probs=74.9
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~ 458 (505)
..|+|++|++|+.. +.+||||++++.+ ..++|++++++.||+|||+|.|.+..... ...|.|+|||++.
T Consensus 39 L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~-- 116 (166)
T 2cm5_A 39 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDI-- 116 (166)
T ss_dssp EEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS--
T ss_pred EEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCC--
Confidence 48999999999864 5799999999976 46799999999999999999999975432 3589999999984
Q ss_pred cCCCCCccEEEEEeccccc
Q 038990 459 RLRSKESLGYVDINLHDVL 477 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~ 477 (505)
++++++||++.++|.++.
T Consensus 117 -~~~~~~iG~~~i~l~~~~ 134 (166)
T 2cm5_A 117 -GKSNDYIGGCQLGISAKG 134 (166)
T ss_dssp -SSCCEEEEEEEEETTCCH
T ss_pred -CCCCcEEEeEEEecccCC
Confidence 678999999999999853
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-14 Score=153.10 Aligned_cols=106 Identities=29% Similarity=0.453 Sum_probs=92.7
Q ss_pred CCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCC
Q 038990 259 KPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKV 338 (505)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~ 338 (505)
...|.|+|+|++|++|+++|..|.+||||++++++.. ++|+++++|+||.|||+|.|.+.....+.|.++|||+|..
T Consensus 384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~---~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~ 460 (510)
T 3jzy_A 384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQS---YTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQF 460 (510)
T ss_dssp --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEE---EECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSS
T ss_pred CCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCee---ccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC
Confidence 4678999999999999999999999999999998754 5999999999999999999999877778899999999999
Q ss_pred CCCcccEEEEEECccCCCCCe----eEEEEecc
Q 038990 339 GTHDKLGMQVVPLRSLTPNET----KELTLDLV 367 (505)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~~~~----~~~~l~l~ 367 (505)
++|++||++.++++++..+.. ...|+.+.
T Consensus 461 ~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~ 493 (510)
T 3jzy_A 461 SPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLH 493 (510)
T ss_dssp SSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECB
T ss_pred CCCCceEEEEEEHHHhccccCCCCceeeeecCC
Confidence 999999999999999876533 44566553
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-14 Score=126.28 Aligned_cols=90 Identities=19% Similarity=0.278 Sum_probs=74.5
Q ss_pred cCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeC-CCCCCeEceeEEEEeecCCCCEEEEEEEEcC
Q 038990 258 KKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKM-KTLNPEWNEDFKLTVKDPETQVLQLHVYDWE 336 (505)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~-~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d 336 (505)
..+.+.|+|+|++|++++ ..|.+||||+++ . +. .+|++++ ++.||.|||+|.|.+.+. ...|.|+|||+|
T Consensus 10 ~g~~~~L~V~V~~A~~l~---~~g~~DPYV~v~-~-~~---~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d 80 (167)
T 2cjs_A 10 GGILSLLCVGVKKAKFDG---AQEKFNTYVTLK-V-QN---VESTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG 80 (167)
T ss_dssp CSCCCEEEEEEEEEECSS---CGGGCEEEEEEE-E-TT---EEEECCCEESSSCEEEEEEEEECCCT-TSEEEEEEEECC
T ss_pred CCceEEEEEEEEEEECCC---CCCCCCeEEEEE-e-cc---eEEEEecCCCCCCCCCCEEEEEeeCC-CCEEEEEEEECC
Confidence 345789999999999884 257899999999 2 11 3555554 699999999999999764 467999999999
Q ss_pred CCCCCcccEEEEEECccCCCC
Q 038990 337 KVGTHDKLGMQVVPLRSLTPN 357 (505)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~~ 357 (505)
.++|++||++.++|+++...
T Consensus 81 -~~~dd~iG~~~i~L~~l~~~ 100 (167)
T 2cjs_A 81 -LIWDTMVGTVWIPLRTIRQS 100 (167)
T ss_dssp -SSCCEEEEEEEEEGGGSCBC
T ss_pred -CCCCceEEEEEEEHHHhccc
Confidence 88999999999999998654
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.2e-15 Score=127.16 Aligned_cols=101 Identities=19% Similarity=0.281 Sum_probs=83.5
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~ 458 (505)
..|+|++|++|+.. + +||||++++.. ..++|+++++|.||+|||+|.|.+..... ...|.|+|||++.
T Consensus 26 L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~-- 102 (142)
T 2dmg_A 26 LIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGG-- 102 (142)
T ss_dssp EEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCC--
T ss_pred EEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCC--
Confidence 48999999999863 5 99999999943 45799999999999999999999864322 2489999999984
Q ss_pred cCC--CCCccEEEEEeccccccCCEEeEEEEeCCCC
Q 038990 459 RLR--SKESLGYVDINLHDVLHNGRLKEKYHLINSK 492 (505)
Q Consensus 459 ~~~--~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~ 492 (505)
++ .+++||++.++|+++.......+||+|...+
T Consensus 103 -~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~ 137 (142)
T 2dmg_A 103 -FLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDS 137 (142)
T ss_dssp -SSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSC
T ss_pred -ccccCCcEEEEEEEecccccccccccceeeccCCC
Confidence 44 3579999999999988776778999998753
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.52 E-value=6.5e-14 Score=120.81 Aligned_cols=101 Identities=20% Similarity=0.302 Sum_probs=83.3
Q ss_pred EEEEEeeecCCCCC----CCCCCEEEEEEcC---eEEEeecccCCCCCccCceEEEE-eeCCCC-CCeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEGK----HHNNPYAVVICRG---EQKKTKMIKKCRDPIWNEEFQFD-FEEAPL-KEKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~~----~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~-v~~~~~-~~~l~i~V~d~~~~~ 458 (505)
..|+|++|++|+.. +.+||||++++.+ ..++|++++++.||+|||+|.|. +..... ...|.|+|||++.
T Consensus 24 L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~-- 101 (138)
T 1ugk_A 24 FVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDR-- 101 (138)
T ss_dssp EEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECS--
T ss_pred EEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCC--
Confidence 48999999999863 5689999999964 56799999999999999999996 654322 3489999999984
Q ss_pred cCCCCCccEEEEEeccccccCC-EEeEEEEeCCC
Q 038990 459 RLRSKESLGYVDINLHDVLHNG-RLKEKYHLINS 491 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~-~~~~~~~L~~~ 491 (505)
++++++||++.++|+++..+. ...-|++|...
T Consensus 102 -~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~ 134 (138)
T 1ugk_A 102 -FSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134 (138)
T ss_dssp -SCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred -CCCCcEEEEEEEehhHccCCCCcchhhhhhhcC
Confidence 778999999999999998754 34567888754
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.51 E-value=3.1e-14 Score=123.50 Aligned_cols=101 Identities=23% Similarity=0.370 Sum_probs=83.6
Q ss_pred eEEEEEeeecCCCCC---CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEE-eeCCCC-CCeEEEEEEEccC
Q 038990 387 VGKATEYGAKDLEGK---HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFD-FEEAPL-KEKIHIEVKSKRR 456 (505)
Q Consensus 387 ~a~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~-v~~~~~-~~~l~i~V~d~~~ 456 (505)
...|+|++|++|+.. +.+||||++++.+ ..++|++++++.||+|||+|.|. +..... ...|.|+|||++.
T Consensus 30 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~ 109 (142)
T 2chd_A 30 NLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDK 109 (142)
T ss_dssp EEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECT
T ss_pred EEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECCC
Confidence 348999999999864 5789999999975 56799999999999999999998 543212 2589999999984
Q ss_pred CccCCCCCccEEEEEeccccccCCEEeEEEEeCC
Q 038990 457 GLRLRSKESLGYVDINLHDVLHNGRLKEKYHLIN 490 (505)
Q Consensus 457 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 490 (505)
++++++||++.++|+++..+....-|++|..
T Consensus 110 ---~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 140 (142)
T 2chd_A 110 ---FGHNEFIGETRFSLKKLKANQRKNFNICLER 140 (142)
T ss_dssp ---TSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred ---CCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence 6778999999999999988776566777754
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.9e-15 Score=126.52 Aligned_cols=109 Identities=26% Similarity=0.370 Sum_probs=84.5
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~ 458 (505)
..|+|.+|++|+.. +.+||||++++.+ ..++|++++++.||+|||+|.|.+..... ...|.|+|||++.
T Consensus 18 L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~~-- 95 (138)
T 3n5a_A 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDK-- 95 (138)
T ss_dssp EEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECCS--
T ss_pred EEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECCC--
Confidence 48999999999864 5799999999964 35699999999999999999999876532 2479999999984
Q ss_pred cCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEEEe
Q 038990 459 RLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWKA 504 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~~~ 504 (505)
++++++||++.++|+++.. ...+|++|.+..+..+. +|.+
T Consensus 96 -~~~~~~lG~~~i~l~~~~~--~~~~W~~l~~~~~~~~~---~Wh~ 135 (138)
T 3n5a_A 96 -LSRNDVIGKIYLSWKSGPG--EVKHWKDMIARPRQPVA---QWHQ 135 (138)
T ss_dssp -SSCCEEEEEEEESSSSCHH--HHHHHHHHHHSTTCCEE---EEEE
T ss_pred -CCCCcEEEEEEEccccCCh--HHHHHHHHHhCCCCeEE---EEee
Confidence 6789999999999987542 23466666654444333 4544
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=8.4e-14 Score=118.84 Aligned_cols=107 Identities=19% Similarity=0.205 Sum_probs=80.9
Q ss_pred EEEEEeeecCCCCCCCCCCEEEEEEcCeEEEeeccc-CCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCcc
Q 038990 388 GKATEYGAKDLEGKHHNNPYAVVICRGEQKKTKMIK-KCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESL 466 (505)
Q Consensus 388 a~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~l 466 (505)
..|+|.+|++++..+.+||||+++ . +..+|++++ ++.||+|||+|.|.+.+. ...|.|+|||++ .++|++|
T Consensus 7 L~V~V~~A~~l~~~g~~DPYv~v~-~-~~~kt~~~~~~t~nP~WnE~f~f~v~~~--~~~L~~~V~D~d----~~~dd~i 78 (131)
T 2cjt_A 7 LCVGVKKAKFDGAQEKFNTYVTLK-V-QNVKSTTIAVRGSQPSWEQDFMFEINRL--DLGLTVEVWNKG----LIWDTMV 78 (131)
T ss_dssp EEEEEEEEECSSCGGGCEEEEEEE-E-TTEEEECCCEESSSCEEEEEEEEEECCC--SSEEEEEEEECC----SSCEEEE
T ss_pred EEEEEEEeECCCCCCCcCeEEEEE-e-cCEEEeEecCCCCCceECCEEEEEEeCC--CCeEEEEEEECC----CCCCCeE
Confidence 378999999997667899999999 3 334555555 699999999999999864 357999999997 5679999
Q ss_pred EEEEEeccccccCC--EEeEEEEeCC-------CC-------CceEEEEEEE
Q 038990 467 GYVDINLHDVLHNG--RLKEKYHLIN-------SK-------NGAVQVEIKW 502 (505)
Q Consensus 467 G~~~i~L~~l~~~~--~~~~~~~L~~-------~~-------~G~i~l~~~~ 502 (505)
|++.++|+++.... ...+|+++.- .. .+.+.+.++|
T Consensus 79 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~ 130 (131)
T 2cjt_A 79 GTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF 130 (131)
T ss_dssp EEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred EEEEEEHHHhhhcCCCCccccEEcccccccCCCcCcceECCCccEEEEEEEe
Confidence 99999999987643 1124544431 11 3448888877
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=145.85 Aligned_cols=112 Identities=17% Similarity=0.309 Sum_probs=99.0
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCC
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKE 464 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~ 464 (505)
..|+|.+|++|+.. +.+||||++++++..++|+++++|.||+|||+|.|.+... ....|.|+|||++. +++++
T Consensus 389 l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~-~~~~l~~~v~d~d~---~~~~d 464 (510)
T 3jzy_A 389 LMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDL-YQDVLCLTLFDRDQ---FSPDD 464 (510)
T ss_dssp EEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCT-TTCEEEEEEEECCS---SSSCC
T ss_pred EEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCC---CCCCC
Confidence 48999999999763 5899999999999999999999999999999999999765 34689999999984 77899
Q ss_pred ccEEEEEeccccccCCE----EeEEEEeCCCCCceEEEEEEEE
Q 038990 465 SLGYVDINLHDVLHNGR----LKEKYHLINSKNGAVQVEIKWK 503 (505)
Q Consensus 465 ~lG~~~i~L~~l~~~~~----~~~~~~L~~~~~G~i~l~~~~~ 503 (505)
+||++.++|+++..+.. ...|++|.+..+|+|+++++++
T Consensus 465 ~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~G~i~l~~~l~ 507 (510)
T 3jzy_A 465 FLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRFDLQ 507 (510)
T ss_dssp EEEEEEEEHHHHHHHHHHHCSCCEEEECBSSSSCEEEEEEEEE
T ss_pred ceEEEEEEHHHhccccCCCCceeeeecCCCCCCceEEEEEEEE
Confidence 99999999999987543 6799999988899999998875
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=121.83 Aligned_cols=102 Identities=20% Similarity=0.302 Sum_probs=83.4
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~ 458 (505)
..|+|++|++|+.. +.+||||++++.+ ..++|++++++.||+|||+|.|.+..... ...|.|+|||++.
T Consensus 27 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~-- 104 (159)
T 1tjx_A 27 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK-- 104 (159)
T ss_dssp EEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS--
T ss_pred EEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCC--
Confidence 48999999999864 5799999999963 34699999999999999999999975433 2479999999984
Q ss_pred cCCCCCccEEEEEeccc----------ccc--CCEEeEEEEeCCCC
Q 038990 459 RLRSKESLGYVDINLHD----------VLH--NGRLKEKYHLINSK 492 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~----------l~~--~~~~~~~~~L~~~~ 492 (505)
++.+++||++.+++.. ++. +....+||+|....
T Consensus 105 -~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~~~ 149 (159)
T 1tjx_A 105 -IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEE 149 (159)
T ss_dssp -SSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCHH
T ss_pred -CCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcCcc
Confidence 6789999999999984 333 34668999997643
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=116.66 Aligned_cols=101 Identities=18% Similarity=0.301 Sum_probs=87.3
Q ss_pred CeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeC-CCCCCeEceeEEEEeecC--CCCEEEEEEEEcC
Q 038990 260 PVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKM-KTLNPEWNEDFKLTVKDP--ETQVLQLHVYDWE 336 (505)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~-~t~nP~wne~f~~~v~~~--~~~~L~v~v~d~d 336 (505)
..-.|+|++.+|.+|+ |++|||+++.+.+.+ ++|++++ ++.||.|||.|.+.+..+ .+..|.+.|||++
T Consensus 19 ~~msL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k---~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~ 90 (144)
T 3l9b_A 19 SHMALIVHLKTVSELR-----GRADRIAKVTFRGQS---FYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYS 90 (144)
T ss_dssp CCEEEEEEEEEEESCC-----SCEEEEEEEEETTEE---EECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEEC
T ss_pred CcEEEEEEEEEecCCC-----CCCCCeEEEEEeccc---eeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECc
Confidence 3457999999999998 578999999997655 5899997 799999999999999754 3678999999999
Q ss_pred CCCCCcccEEEEEECccCCCCCeeEEEEeccc
Q 038990 337 KVGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
++++|++||++.++|+++..+.....+..|..
T Consensus 91 ~v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD 122 (144)
T 3l9b_A 91 KVFSNKLIGTFRMVLQKVVEENRVEVSDTLID 122 (144)
T ss_dssp TTSCCEEEEEEEEESHHHHHHSEEEEEEEEEC
T ss_pred cccCCCEEEEEEEEhHHhccCCeEEEeecccC
Confidence 99999999999999999998876666666543
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=3.7e-13 Score=119.60 Aligned_cols=86 Identities=20% Similarity=0.253 Sum_probs=71.9
Q ss_pred eEEEEEeeecCCCCCCCCCCEEEEEEcCeEEEeeccc-CCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCc
Q 038990 387 VGKATEYGAKDLEGKHHNNPYAVVICRGEQKKTKMIK-KCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKES 465 (505)
Q Consensus 387 ~a~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~ 465 (505)
...|+|++|++++..+.+||||+++ .+.++|++++ ++.||+|||+|.|.+.+. ...|.|+|||++ +..|++
T Consensus 15 ~L~V~V~~A~~l~~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~--~~~L~~~V~D~d----~~~dd~ 86 (167)
T 2cjs_A 15 LLCVGVKKAKFDGAQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRL--DLGLTVEVWNKG----LIWDTM 86 (167)
T ss_dssp EEEEEEEEEECSSCGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCT--TSEEEEEEEECC----SSCCEE
T ss_pred EEEEEEEEEECCCCCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCC--CCEEEEEEEECC----CCCCce
Confidence 3589999999987667899999999 3345666665 699999999999999864 458999999997 567999
Q ss_pred cEEEEEeccccccCC
Q 038990 466 LGYVDINLHDVLHNG 480 (505)
Q Consensus 466 lG~~~i~L~~l~~~~ 480 (505)
||++.++|+++....
T Consensus 87 iG~~~i~L~~l~~~~ 101 (167)
T 2cjs_A 87 VGTVWIPLRTIRQSN 101 (167)
T ss_dssp EEEEEEEGGGSCBCS
T ss_pred EEEEEEEHHHhcccC
Confidence 999999999987643
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-14 Score=139.83 Aligned_cols=98 Identities=36% Similarity=0.572 Sum_probs=84.9
Q ss_pred CCeEEEEEEEeeccCccccCCCCCCCcEEEEEECC--eecceeeeeeeCCCCCCeEceeEEEEeecCC--CCEEEEEEEE
Q 038990 259 KPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSG--ERIPAKKTSVKMKTLNPEWNEDFKLTVKDPE--TQVLQLHVYD 334 (505)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~--~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~--~~~L~v~v~d 334 (505)
...|.|.|+|++|++|+.+|..|.+||||++++.+ ....+++|+++++++||.|||+|.|.+.... ...|.|+|||
T Consensus 149 ~~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d 228 (296)
T 1dqv_A 149 PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVD 228 (296)
T ss_dssp TTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEE
T ss_pred cccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEe
Confidence 35689999999999999999999999999999963 3345579999999999999999999886432 4579999999
Q ss_pred cCCCCCCcccEEEEEECccCCC
Q 038990 335 WEKVGTHDKLGMQVVPLRSLTP 356 (505)
Q Consensus 335 ~d~~~~d~~lG~~~i~l~~l~~ 356 (505)
+|..++|++||++.++++++..
T Consensus 229 ~d~~~~~~~iG~~~i~l~~~~~ 250 (296)
T 1dqv_A 229 YDCIGHNEVIGVCRVGPEAADP 250 (296)
T ss_dssp CCSSSCCEEEEECCCSSCTTCH
T ss_pred CCCCCCCceEEEEEECCccCCc
Confidence 9999999999999999987643
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.43 E-value=3.8e-13 Score=143.69 Aligned_cols=105 Identities=24% Similarity=0.452 Sum_probs=89.9
Q ss_pred CeEEEEEEEeeccCccccCC--CCCCCcEEEEEECCe--ecceeeeeeeCCC-CCCeEceeEEEEeecCCCCEEEEEEEE
Q 038990 260 PVGILHVKVIRAIRLLKMDI--FGASDPYVQLSLSGE--RIPAKKTSVKMKT-LNPEWNEDFKLTVKDPETQVLQLHVYD 334 (505)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~l~~~--~~~~~~T~~~~~t-~nP~wne~f~~~v~~~~~~~L~v~v~d 334 (505)
..+.|+|+|++|++|+..+. .+.+||||++++.+. ...++||++++++ +||+|||+|.|.+..+....|+|+|||
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D 574 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED 574 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence 57899999999999999884 688999999999552 1234689999987 999999999999987666789999999
Q ss_pred cCCCCCCcccEEEEEECccCCCCCeeEEEEecc
Q 038990 335 WEKVGTHDKLGMQVVPLRSLTPNETKELTLDLV 367 (505)
Q Consensus 335 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~ 367 (505)
+|..++|++||++.+++..+..+. .+++|.
T Consensus 575 ~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~ 604 (624)
T 1djx_A 575 YDSSSKNDFIGQSTIPWNSLKQGY---RHVHLL 604 (624)
T ss_dssp CCSSSCCEEEEEEEEEGGGBCCEE---EEEEEE
T ss_pred cCCCCCCceeEEEEEEHHHcCCCc---EEEeCC
Confidence 999999999999999999998752 366664
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.5e-12 Score=134.40 Aligned_cols=105 Identities=18% Similarity=0.274 Sum_probs=88.5
Q ss_pred EEEEEeeecCCCC--CCCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCc
Q 038990 388 GKATEYGAKDLEG--KHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKES 465 (505)
Q Consensus 388 a~v~v~~a~~L~~--~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~ 465 (505)
.+|+|++|++|+. .+.+||||++++++..++|+++++++||+|||.|.|.+.+....+.|.|+|||++. ...|++
T Consensus 396 L~V~V~~A~~L~~D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~---~~~dD~ 472 (540)
T 3nsj_A 396 LVVSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADY---GWDDDL 472 (540)
T ss_dssp EEEEEEEEESCCCSSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCS---SSCCEE
T ss_pred EEEEEEEccCCCcccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCC---CCCCCE
Confidence 4899999999986 35799999999999889999999999999999999997543345689999999984 678899
Q ss_pred cEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEE
Q 038990 466 LGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKW 502 (505)
Q Consensus 466 lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~ 502 (505)
||++.++|.. +....|++|. .|.|+++++.
T Consensus 473 LG~~~~~L~~----g~~~~~~~l~---~G~l~~~~~~ 502 (540)
T 3nsj_A 473 LGSCDRSPHS----GFHEVTCELN---HGRVKFSYHA 502 (540)
T ss_dssp EEEEEECCCS----EEEEEEEECS---SSEEEEEEEE
T ss_pred EEEEEEEeeC----CcEEEEEEcC---CeEEEEEEEE
Confidence 9999999972 3457888875 5888888764
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.4e-13 Score=139.59 Aligned_cols=113 Identities=14% Similarity=0.196 Sum_probs=17.8
Q ss_pred EEEEEeeecCCCCCCCCCCEEEEEEcCeE-EEeecccCC---CCCccCceEEEEeeCCCCCCeEEEEEEEc-cCCccCCC
Q 038990 388 GKATEYGAKDLEGKHHNNPYAVVICRGEQ-KKTKMIKKC---RDPIWNEEFQFDFEEAPLKEKIHIEVKSK-RRGLRLRS 462 (505)
Q Consensus 388 a~v~v~~a~~L~~~~~~dpyv~v~~~~~~-~kT~v~~~t---~nP~wne~f~f~v~~~~~~~~l~i~V~d~-~~~~~~~~ 462 (505)
.+|+|++|++|+.++ ||||++++++.. .||+++++| .||+|||+|+|.+... ...|.++|||+ +.+...++
T Consensus 13 L~V~VieAk~L~~~d--dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~--~~~L~v~V~d~~d~~~~~~~ 88 (483)
T 3bxj_A 13 LKLWIIEARELPPKK--RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA--VRALRLHLYRDSDKKRKKDK 88 (483)
T ss_dssp C-----------------------------------------------CCEECC--------------------------
T ss_pred EEEEEEEcCCcCCCC--CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCC--ccEEEEEEEecCCccccCCC
Confidence 479999999998864 999999998764 599999999 9999999999997543 36899999995 31001467
Q ss_pred CCccEEEEEeccccccCCEEeEEEEeCCC---------------------------CCceEEEEEEEEe
Q 038990 463 KESLGYVDINLHDVLHNGRLKEKYHLINS---------------------------KNGAVQVEIKWKA 504 (505)
Q Consensus 463 d~~lG~~~i~L~~l~~~~~~~~~~~L~~~---------------------------~~G~i~l~~~~~~ 504 (505)
+++||++.++++++..+...++||+|.+. ..|.|+|+++|.+
T Consensus 89 d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~ 157 (483)
T 3bxj_A 89 AGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQT 157 (483)
T ss_dssp ------------------CCEECC--------------------------------------CEEEEEE
T ss_pred CceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeee
Confidence 89999999999999887777899999532 1489999999986
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.26 E-value=8.3e-12 Score=134.49 Aligned_cols=105 Identities=14% Similarity=0.284 Sum_probs=89.7
Q ss_pred eEEEEEeeecCCCC---C---CCCCCEEEEEEcC---eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCC
Q 038990 387 VGKATEYGAKDLEG---K---HHNNPYAVVICRG---EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRG 457 (505)
Q Consensus 387 ~a~v~v~~a~~L~~---~---~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~ 457 (505)
..+|+|++|++|+. . +.+||||++++.+ .+++|++++++.||+|||+|.|.+... ....|.|+|||++.
T Consensus 19 ~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~-~~~~L~~~V~D~D~- 96 (749)
T 1cjy_A 19 KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMDANY- 96 (749)
T ss_dssp EEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCBCEEEEEECCS-
T ss_pred EEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCC-CCCEEEEEEEECCC-
Confidence 45899999999987 3 6899999999984 567999999999999999999999875 34589999999985
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEEE
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQV 498 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l 498 (505)
++ +++||++.++|.++..+....+||+|... +++.+
T Consensus 97 --~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~~--~e~~l 132 (749)
T 1cjy_A 97 --VM-DETLGTATFTVSSMKVGEKKEVPFIFNQV--TEMVL 132 (749)
T ss_dssp --SS-CEEEEEECCBSTTSCTTCCCCEEEEETTT--EEEEE
T ss_pred --CC-CceeEEEEEEHHHcCCCCceEEEEecCCC--ceEee
Confidence 66 99999999999999887777899999753 44443
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.25 E-value=2.7e-11 Score=129.38 Aligned_cols=109 Identities=17% Similarity=0.308 Sum_probs=91.1
Q ss_pred EEEEEeeecCCCCC-----CCCCCEEEEEEcC-----eEEEeecccCC-CCCccCceEEEEeeCCCCCCeEEEEEEEccC
Q 038990 388 GKATEYGAKDLEGK-----HHNNPYAVVICRG-----EQKKTKMIKKC-RDPIWNEEFQFDFEEAPLKEKIHIEVKSKRR 456 (505)
Q Consensus 388 a~v~v~~a~~L~~~-----~~~dpyv~v~~~~-----~~~kT~v~~~t-~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~ 456 (505)
.+|+|++|++|+.. +.+||||++.+.+ .++||++++++ .||+|||+|+|.+..+.. ..|.|+|||++.
T Consensus 499 L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el-~~L~~~V~D~D~ 577 (624)
T 1djx_A 499 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDL-ALVRFMVEDYDS 577 (624)
T ss_dssp EEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGG-CEEEEEEEECCS
T ss_pred EEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCC-CEEEEEEEEcCC
Confidence 58999999999753 4799999999955 46799999997 999999999999987633 589999999984
Q ss_pred CccCCCCCccEEEEEeccccccCCEEeEEEEeCCCC-----CceEEEEEEEE
Q 038990 457 GLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSK-----NGAVQVEIKWK 503 (505)
Q Consensus 457 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~~~ 503 (505)
++++++||++.++|+++..+ .+|++|.+.. .+.|.|+++++
T Consensus 578 ---~~~dd~iG~~~ipl~~L~~G---~r~v~L~d~~g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 578 ---SSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPSATLFVKISIQ 623 (624)
T ss_dssp ---SSCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred ---CCCCceeEEEEEEHHHcCCC---cEEEeCCCCCcCCCCceEEEEEEEEE
Confidence 67899999999999998764 3699997653 46777887764
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.24 E-value=9.8e-12 Score=135.22 Aligned_cols=108 Identities=31% Similarity=0.508 Sum_probs=91.9
Q ss_pred CeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeecCC-CCEEEEEEEEcC
Q 038990 260 PVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKDPE-TQVLQLHVYDWE 336 (505)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~~~-~~~L~v~v~d~d 336 (505)
..+.|.|++++|++|+++|..|.+||||++++.+. ...+++|+++++++||.|||+|.|.+.... ...|.++|||+|
T Consensus 170 ~~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d 249 (674)
T 3pfq_A 170 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWD 249 (674)
T ss_dssp CSSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECC
T ss_pred ccceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeecc
Confidence 45789999999999999999999999999998442 233579999999999999999999987533 457999999999
Q ss_pred CCCCCcccEEEEEECccCCCCCeeEEEEeccc
Q 038990 337 KVGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
..++|++||++.++++++.... ...|..+..
T Consensus 250 ~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls 280 (674)
T 3pfq_A 250 LTSRNDFMGSLSFGISELQKAG-VDGWFKLLS 280 (674)
T ss_dssp SSSCCEECCBCCCBTTHHHHCC-EEEEEECBC
T ss_pred cccccccccccccchhhhccCC-cccceeecc
Confidence 9999999999999999988664 366777654
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.24 E-value=6e-13 Score=138.60 Aligned_cols=102 Identities=22% Similarity=0.307 Sum_probs=15.2
Q ss_pred CCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCC---CCCeEceeEEEEeecCCCCEEEEEEEEc
Q 038990 259 KPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKT---LNPEWNEDFKLTVKDPETQVLQLHVYDW 335 (505)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t---~nP~wne~f~~~v~~~~~~~L~v~v~d~ 335 (505)
+..|.|+|+|++|++|+++| ||||++++++... .||+++++| +||.|||+|.|.+... ...|.++|||.
T Consensus 8 r~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~--~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d~ 79 (483)
T 3bxj_A 8 RVDNVLKLWIIEARELPPKK-----RYYCELCLDDMLY--ARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYRD 79 (483)
T ss_dssp EEEECC----------------------------------------------------CCEECC----------------
T ss_pred eeccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEE--eeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEec
Confidence 45689999999999999877 9999999987543 589999999 9999999999987543 57899999994
Q ss_pred -C---CCCCCcccEEEEEECccCCCCCeeEEEEeccc
Q 038990 336 -E---KVGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 336 -d---~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
| ..++|++||++.++++++..+...+.|++|..
T Consensus 80 ~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~ 116 (483)
T 3bxj_A 80 SDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTL 116 (483)
T ss_dssp ---------------------------CCEECC----
T ss_pred CCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCC
Confidence 4 36789999999999999998877788888753
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.3e-10 Score=124.44 Aligned_cols=104 Identities=22% Similarity=0.399 Sum_probs=88.5
Q ss_pred eEEEEEeeecCCCCC---CCCCCEEEEEE-----cCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCc
Q 038990 387 VGKATEYGAKDLEGK---HHNNPYAVVIC-----RGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGL 458 (505)
Q Consensus 387 ~a~v~v~~a~~L~~~---~~~dpyv~v~~-----~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~ 458 (505)
...|.+.+|++|... +.+||||++++ ...+++|++++++.||+|||.|.|.+.....+..|.++|||++.
T Consensus 173 ~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~-- 250 (674)
T 3pfq_A 173 VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL-- 250 (674)
T ss_dssp EEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS--
T ss_pred eeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc--
Confidence 358999999999763 68999999999 33457999999999999999999999876555689999999985
Q ss_pred cCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCc
Q 038990 459 RLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNG 494 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G 494 (505)
.+++++||++.++++++..... ++||.|.+...|
T Consensus 251 -~~~dd~iG~~~i~l~~l~~~~~-~~w~~Lls~~~g 284 (674)
T 3pfq_A 251 -TSRNDFMGSLSFGISELQKAGV-DGWFKLLSQEEG 284 (674)
T ss_dssp -SSCCEECCBCCCBTTHHHHCCE-EEEEECBCTTGG
T ss_pred -ccccccccccccchhhhccCCc-ccceeecccccc
Confidence 7889999999999999987654 899999875433
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.03 E-value=4.8e-10 Score=122.10 Aligned_cols=89 Identities=25% Similarity=0.419 Sum_probs=74.8
Q ss_pred eEEEEEEEeeccCccccCCCCCCCcEEEEEECCee----cceeeeeeeCC-CCCCeEcee-EEEE-eecCCCCEEEEEEE
Q 038990 261 VGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER----IPAKKTSVKMK-TLNPEWNED-FKLT-VKDPETQVLQLHVY 333 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~----~~~~~T~~~~~-t~nP~wne~-f~~~-v~~~~~~~L~v~v~ 333 (505)
.+.|+|+|++|++|+.+ .+||||++.+.+.. ..+++|+++++ ++||+|||+ |.|. +..++...|+|+||
T Consensus 649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~ 724 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVS 724 (816)
T ss_dssp CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEE
Confidence 47899999999999853 58999999997521 13468998875 699999998 9998 76666678999999
Q ss_pred EcCCCCCCcccEEEEEECccCCCC
Q 038990 334 DWEKVGTHDKLGMQVVPLRSLTPN 357 (505)
Q Consensus 334 d~d~~~~d~~lG~~~i~l~~l~~~ 357 (505)
|++ +++||++.+||+.|..+
T Consensus 725 D~d----ddfiG~~~ipL~~L~~G 744 (816)
T 3qr0_A 725 EEN----GKFIGHRVMPLDGIKPG 744 (816)
T ss_dssp ETT----SCEEEEEEEESTTCCCE
T ss_pred ecC----CCeeeEEEEEHHHcCCc
Confidence 985 79999999999999976
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.9e-10 Score=123.40 Aligned_cols=89 Identities=22% Similarity=0.391 Sum_probs=74.2
Q ss_pred eEEEEEEEeeccCccccCCCCCCCcEEEEEECCe---ecceeeeeeeCC-CCCCeEce-eEEEE-eecCCCCEEEEEEEE
Q 038990 261 VGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE---RIPAKKTSVKMK-TLNPEWNE-DFKLT-VKDPETQVLQLHVYD 334 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~---~~~~~~T~~~~~-t~nP~wne-~f~~~-v~~~~~~~L~v~v~d 334 (505)
...|.|+|++|++|+.+ .+||||++.+.+. ...+++|+++++ ++||+||| +|.|. +..++...|+|+|||
T Consensus 724 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D 799 (885)
T 3ohm_B 724 ANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE 799 (885)
T ss_dssp CEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred ceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEc
Confidence 45899999999999853 5899999999652 122358998875 59999999 69998 766666789999999
Q ss_pred cCCCCCCcccEEEEEECccCCCC
Q 038990 335 WEKVGTHDKLGMQVVPLRSLTPN 357 (505)
Q Consensus 335 ~d~~~~d~~lG~~~i~l~~l~~~ 357 (505)
+| |++||++.+||..|..+
T Consensus 800 ~d----ddfiG~~~lpL~~L~~G 818 (885)
T 3ohm_B 800 EG----GKFVGHRILPVSAIRSG 818 (885)
T ss_dssp TT----TEEEEEEEEETTTCCCE
T ss_pred CC----ccEEeeEEEEHHHcCCC
Confidence 87 79999999999999876
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.01 E-value=5.1e-10 Score=122.46 Aligned_cols=97 Identities=25% Similarity=0.373 Sum_probs=78.0
Q ss_pred CeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe---ecceeeee-eeC-CCCCCeEce-eEEE-EeecCCCCEEEEEE
Q 038990 260 PVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE---RIPAKKTS-VKM-KTLNPEWNE-DFKL-TVKDPETQVLQLHV 332 (505)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~---~~~~~~T~-~~~-~t~nP~wne-~f~~-~v~~~~~~~L~v~v 332 (505)
..|.|.|+|++|++|+. +.+||||++.+.+. ...++||+ +++ +++||+||| +|.| .+..++...|+|.|
T Consensus 676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V 751 (799)
T 2zkm_X 676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV 751 (799)
T ss_dssp TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence 46899999999999985 46899999999542 22246898 775 569999999 7999 88766667899999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCCeeEEEEecc
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLV 367 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~ 367 (505)
||+| +++||++.+|++.|..+. .+++|.
T Consensus 752 ~D~d----~d~iG~~~ipl~~L~~G~---r~v~L~ 779 (799)
T 2zkm_X 752 MEEG----NKFLGHRIIPINALNSGY---HHLCLH 779 (799)
T ss_dssp EETT----TEEEEEEEEEGGGBCCEE---EEEEEE
T ss_pred EEeC----CCccceEeeehhhcCCCc---EEEecc
Confidence 9996 799999999999998652 345553
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=6.1e-09 Score=114.03 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=84.2
Q ss_pred EEEEEeeecCCCCCCCCCCEEEEEEcC------eEEEeecccC-CCCCccCc-eEEEE-eeCCCCCCeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEGKHHNNPYAVVICRG------EQKKTKMIKK-CRDPIWNE-EFQFD-FEEAPLKEKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~~~~~dpyv~v~~~~------~~~kT~v~~~-t~nP~wne-~f~f~-v~~~~~~~~l~i~V~d~~~~~ 458 (505)
.+|+|++|++|+.. .+||||++.+.+ .+++|+++++ +.||+||| +|.|. +..+.. ..|.|+|||++
T Consensus 727 L~V~Visaq~L~~~-~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pel-a~Lrf~V~D~d--- 801 (885)
T 3ohm_B 727 LRVKVISGQFLSDR-KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTL-ASLRIAAFEEG--- 801 (885)
T ss_dssp EEEEEEEEESCCSS-CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGG-CEEEEEEEETT---
T ss_pred EEEEEEEeccCccc-CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCc-CEEEEEEEcCC---
Confidence 38999999999874 799999999965 2469999986 59999999 69998 765533 48999999985
Q ss_pred cCCCCCccEEEEEeccccccCCEEeEEEEeCCCC-----CceEEEEEEEEe
Q 038990 459 RLRSKESLGYVDINLHDVLHNGRLKEKYHLINSK-----NGAVQVEIKWKA 504 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~~~~ 504 (505)
+++||++.++|+.|..+. ++.+|.+.. .|.|.|.+..+.
T Consensus 802 ----ddfiG~~~lpL~~L~~Gy---R~vpL~~~~g~~l~~atLfv~i~~~~ 845 (885)
T 3ohm_B 802 ----GKFVGHRILPVSAIRSGY---HYVCLRNEANQPLCLPALLIYTEASD 845 (885)
T ss_dssp ----TEEEEEEEEETTTCCCEE---EEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred ----ccEEeeEEEEHHHcCCCc---eEEEecCCCCCccCceEEEEEEEEEe
Confidence 589999999999987643 568887653 467888877663
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1e-08 Score=111.68 Aligned_cols=104 Identities=23% Similarity=0.233 Sum_probs=83.6
Q ss_pred EEEEEeeecCCCCCCCCCCEEEEEEcC-------eEEEeecccC-CCCCccCce-EEEE-eeCCCCCCeEEEEEEEccCC
Q 038990 388 GKATEYGAKDLEGKHHNNPYAVVICRG-------EQKKTKMIKK-CRDPIWNEE-FQFD-FEEAPLKEKIHIEVKSKRRG 457 (505)
Q Consensus 388 a~v~v~~a~~L~~~~~~dpyv~v~~~~-------~~~kT~v~~~-t~nP~wne~-f~f~-v~~~~~~~~l~i~V~d~~~~ 457 (505)
.+|+|++|++|+. ..+||||++.+.+ ++++|+++++ +.||+|||+ |+|. +..+.+ ..|.|+|+|++
T Consensus 652 L~V~Visaq~L~~-~~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pel-a~Lrf~V~D~d-- 727 (816)
T 3qr0_A 652 IEIKIISAQFLSD-KQISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDL-AVVRIIVSEEN-- 727 (816)
T ss_dssp EEEEEEEEECCCS-SCCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGG-CEEEEEEEETT--
T ss_pred EEEEEEEcccCCC-CCCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCc-cEEEEEEEecC--
Confidence 4899999999986 4799999999975 4569999986 699999997 9998 766533 48999999974
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEeCCCC-----CceEEEEEEEE
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSK-----NGAVQVEIKWK 503 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~~~ 503 (505)
++++|++.++|+.|..+. ++.+|.+.. .+.|.|.+..+
T Consensus 728 -----ddfiG~~~ipL~~L~~Gy---R~vpL~~~~g~~~~~atLfv~i~~~ 770 (816)
T 3qr0_A 728 -----GKFIGHRVMPLDGIKPGY---RHVPLRNESNRPLGLASVFAHIVAK 770 (816)
T ss_dssp -----SCEEEEEEEESTTCCCEE---EEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred -----CCeeeEEEEEHHHcCCcc---eEEEEeCCCCCCCCceEEEEEEEEE
Confidence 589999999999987653 578887753 25666666554
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=98.86 E-value=9.5e-09 Score=112.46 Aligned_cols=104 Identities=19% Similarity=0.226 Sum_probs=82.5
Q ss_pred EEEEEeeecCCCCCCCCCCEEEEEEcC------eEEEee-cccC-CCCCccCc-eEEE-EeeCCCCCCeEEEEEEEccCC
Q 038990 388 GKATEYGAKDLEGKHHNNPYAVVICRG------EQKKTK-MIKK-CRDPIWNE-EFQF-DFEEAPLKEKIHIEVKSKRRG 457 (505)
Q Consensus 388 a~v~v~~a~~L~~~~~~dpyv~v~~~~------~~~kT~-v~~~-t~nP~wne-~f~f-~v~~~~~~~~l~i~V~d~~~~ 457 (505)
.+|.|++|++|+. +.+||||++.+.+ +++||+ ++++ +.||+||| +|+| .+..+.+ ..|.|+|+|++
T Consensus 680 L~V~Visa~~L~~-~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el-~~Lr~~V~D~d-- 755 (799)
T 2zkm_X 680 LSITVISGQFLSE-RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPEL-ASLRVAVMEEG-- 755 (799)
T ss_dssp EEEEEEEEESCCS-SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGG-CEEEEEEEETT--
T ss_pred EEEEEEeccccCc-cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCc-cEEEEEEEEeC--
Confidence 4899999999986 5799999999954 246899 8875 69999999 6999 8876543 38999999985
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEeCCCC-----CceEEEEEEEE
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSK-----NGAVQVEIKWK 503 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~~~ 503 (505)
+++||++.++|+.|..+ .++++|.+.. .+.|.|.++++
T Consensus 756 -----~d~iG~~~ipl~~L~~G---~r~v~L~~~~g~~~~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 756 -----NKFLGHRIIPINALNSG---YHHLCLHSESNMPLTMPALFIFLEMK 798 (799)
T ss_dssp -----TEEEEEEEEEGGGBCCE---EEEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred -----CCccceEeeehhhcCCC---cEEEeccCCCCCCCCceEEEEEEEEE
Confidence 58999999999998754 3678887643 35566666654
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.84 E-value=3.1e-08 Score=80.93 Aligned_cols=89 Identities=20% Similarity=0.291 Sum_probs=74.4
Q ss_pred CCCCEEEEEEcCeE----EEe-ecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCccEEEEEeccccc
Q 038990 403 HNNPYAVVICRGEQ----KKT-KMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVL 477 (505)
Q Consensus 403 ~~dpyv~v~~~~~~----~kT-~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l~ 477 (505)
..||||.+.+.... .+| ...++|..|+||++|.-.+.+. +.|.|.|++.. .++++.+++++.+|.
T Consensus 26 ~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~G---r~l~i~Vfh~a-------~~fvAn~tV~~edL~ 95 (126)
T 1yrk_A 26 ANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEG---RVIQIVLMRAA-------EEPVSEVTVGVSVLA 95 (126)
T ss_dssp SCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCTT---CEEEEEEEEET-------TEEEEEEEEEHHHHH
T ss_pred cCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeCC---EEEEEEEEcCC-------CCeeeEEEEEHHHHH
Confidence 68999999986543 144 7777899999999999999875 78999999765 289999999999999
Q ss_pred c-----CCEEeEEEEeCCCCCceEEEEEEEE
Q 038990 478 H-----NGRLKEKYHLINSKNGAVQVEIKWK 503 (505)
Q Consensus 478 ~-----~~~~~~~~~L~~~~~G~i~l~~~~~ 503 (505)
+ +...+-|.+|+ ++|+|++.++|-
T Consensus 96 ~~c~~~~g~~e~WvdLe--P~Gkl~~~i~~~ 124 (126)
T 1yrk_A 96 ERCKKNNGKAEFWLDLQ--PQAKVLMSVQYF 124 (126)
T ss_dssp HHHHTTTTEEEEEEECB--SSCEEEEEEEEE
T ss_pred hhhccCCCceEEEEecc--cCcEEEEEEEEe
Confidence 4 34668899997 489999999984
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=4.8e-08 Score=80.82 Aligned_cols=104 Identities=15% Similarity=0.221 Sum_probs=80.5
Q ss_pred EEEEEeeecC--CCC--CCCCCCEEEEEEcCeE----EEe-ecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCc
Q 038990 388 GKATEYGAKD--LEG--KHHNNPYAVVICRGEQ----KKT-KMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~--L~~--~~~~dpyv~v~~~~~~----~kT-~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~ 458 (505)
.+|...++.- +.. ....||||.+.+.... .+| ...++|..|+||++|.-.+.+. +.|.|.|++..
T Consensus 12 lRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~G---r~l~i~Vfh~a--- 85 (138)
T 2enj_A 12 LRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKG---RVMQIIVKGKN--- 85 (138)
T ss_dssp EEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCSS---CEEEEEEECSS---
T ss_pred eEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEECC---eEEEEEEEcCC---
Confidence 3566555443 221 2369999999986542 366 6677799999999999999875 78999999654
Q ss_pred cCCCCCccEEEEEeccccccC-----CEEeEEEEeCCCCCceEEEEEEEE
Q 038990 459 RLRSKESLGYVDINLHDVLHN-----GRLKEKYHLINSKNGAVQVEIKWK 503 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~-----~~~~~~~~L~~~~~G~i~l~~~~~ 503 (505)
.++++.+++++.+|.++ ...+-|.+|+- +|+|++.++|.
T Consensus 86 ----~~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP--~Gkl~v~i~~~ 129 (138)
T 2enj_A 86 ----VDLISETTVELYSLAERCRKNNGKTEIWLELKP--QGRMLMNARYF 129 (138)
T ss_dssp ----CSCCEEEEEESHHHHHHHHHTTTCEEEEEECBS--SCEEEEEEEEC
T ss_pred ----CCeeeEEEEEHHHHHhhhccCCCceEEEEeccc--CcEEEEEEEEE
Confidence 28999999999999953 46688999974 89999999984
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.59 E-value=2.8e-07 Score=75.26 Aligned_cols=102 Identities=20% Similarity=0.230 Sum_probs=75.1
Q ss_pred eEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecc-eeee-eeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCC
Q 038990 261 VGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIP-AKKT-SVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKV 338 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~-~~~T-~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~ 338 (505)
.+-|+|.+.++.--+-+......||||.+.++..... ..+| ..+++|..|.|||+|.-.+++ .+.|.+.|++...
T Consensus 5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~- 81 (126)
T 1yrk_A 5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAAE- 81 (126)
T ss_dssp CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT--TCEEEEEEEEETT-
T ss_pred CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC--CEEEEEEEEcCCC-
Confidence 4567888765543221222235799999999754422 2355 778889999999999999865 5789999997653
Q ss_pred CCCcccEEEEEECccCC-----CCCeeEEEEeccc
Q 038990 339 GTHDKLGMQVVPLRSLT-----PNETKELTLDLVK 368 (505)
Q Consensus 339 ~~d~~lG~~~i~l~~l~-----~~~~~~~~l~l~~ 368 (505)
+++..|.+++++|. .+...+.|++|.+
T Consensus 82 ---~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP 113 (126)
T 1yrk_A 82 ---EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP 113 (126)
T ss_dssp ---EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS
T ss_pred ---CeeeEEEEEHHHHHhhhccCCCceEEEEeccc
Confidence 89999999999988 4456689998754
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.3e-07 Score=75.18 Aligned_cols=103 Identities=20% Similarity=0.197 Sum_probs=76.5
Q ss_pred CeEEEEEEEeeccCccccC-CCCCCCcEEEEEECCeec-ceeee-eeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcC
Q 038990 260 PVGILHVKVIRAIRLLKMD-IFGASDPYVQLSLSGERI-PAKKT-SVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWE 336 (505)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~l~~~~~-~~~~T-~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d 336 (505)
..+-|+|.+.++.-.+-+. .....||||.+.++.... ...+| ..+++|..|.|||+|.-.+++ .+.|.+.|++..
T Consensus 8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a 85 (138)
T 2enj_A 8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK--GRVMQIIVKGKN 85 (138)
T ss_dssp CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS--SCEEEEEEECSS
T ss_pred cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC--CeEEEEEEEcCC
Confidence 4567888886665433222 123579999999986533 23566 777889999999999998865 578999999654
Q ss_pred CCCCCcccEEEEEECccCC-----CCCeeEEEEeccc
Q 038990 337 KVGTHDKLGMQVVPLRSLT-----PNETKELTLDLVK 368 (505)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~-----~~~~~~~~l~l~~ 368 (505)
. +++..|.+++.+|. .+...++|++|.+
T Consensus 86 ~----~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP 118 (138)
T 2enj_A 86 V----DLISETTVELYSLAERCRKNNGKTEIWLELKP 118 (138)
T ss_dssp C----SCCEEEEEESHHHHHHHHHTTTCEEEEEECBS
T ss_pred C----CeeeEEEEEHHHHHhhhccCCCceEEEEeccc
Confidence 3 89999999999998 4456689998754
|
| >3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.95 E-value=2.8 Score=37.76 Aligned_cols=57 Identities=14% Similarity=0.240 Sum_probs=42.2
Q ss_pred ceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEEEEcCCC----CCCcccEEEEEECcc
Q 038990 297 PAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHVYDWEKV----GTHDKLGMQVVPLRS 353 (505)
Q Consensus 297 ~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v~d~d~~----~~d~~lG~~~i~l~~ 353 (505)
...+|.+...+.+|.|+|++.+.+... ....|.|++++...- ..+..+|.+-+||-.
T Consensus 77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~ 139 (220)
T 3l4c_A 77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR 139 (220)
T ss_dssp SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence 346888888899999999999998643 356899999876421 122468888888753
|
| >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A | Back alignment and structure |
|---|
Probab=89.53 E-value=2.8 Score=46.84 Aligned_cols=106 Identities=21% Similarity=0.239 Sum_probs=68.3
Q ss_pred eEEEEEEEeeccCccccCCCCCCCcEEEEEE--CCeecc-eeeeeeeCCCCCCeEceeEEEEee---cCCCCEEEEEEEE
Q 038990 261 VGILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIP-AKKTSVKMKTLNPEWNEDFKLTVK---DPETQVLQLHVYD 334 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l--~~~~~~-~~~T~~~~~t~nP~wne~f~~~v~---~~~~~~L~v~v~d 334 (505)
...++|+|.++.++.... ....+-||.+.+ |+...- ..+|+. ....+|.|||...|.+. -|....|.++||+
T Consensus 354 ~~~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~-~~~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~ 431 (1091)
T 3hhm_A 354 NSALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQR-VPCSNPRWNEWLNYDIYIPDLPRAARLCLSICS 431 (1091)
T ss_dssp CSEEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCC-CCTTSCEEEEEEEEEEEGGGCCTTCEEEEEECC
T ss_pred CCCEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceeccc-cCCCCCCCCeeEEecCccccCChhcEEEEEEEE
Confidence 357899999998886433 234577888766 444331 123443 33568889999998876 2457889999998
Q ss_pred cCCC----CCCcccEEEEEECccCCCC-CeeEEEEeccc
Q 038990 335 WEKV----GTHDKLGMQVVPLRSLTPN-ETKELTLDLVK 368 (505)
Q Consensus 335 ~d~~----~~d~~lG~~~i~l~~l~~~-~~~~~~l~l~~ 368 (505)
.... ..+..+|.+.++|-+-... ....+.+.+++
T Consensus 432 ~~~~~~~~~~~~~lg~~n~~lfd~~~~L~~G~~~L~lW~ 470 (1091)
T 3hhm_A 432 VKGRKGAKEEHCPLAWGNINLFDYTDTLVSGKMALNLWP 470 (1091)
T ss_dssp CCCCC-------CCEEEEEESBCTTCBBCCEEEEEECEE
T ss_pred ecCccCcccccceeEEeeeeeEccCCeEEcCCeEEEeec
Confidence 7542 1345899999999765533 12345566664
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=89.43 E-value=1.6 Score=48.27 Aligned_cols=106 Identities=14% Similarity=0.116 Sum_probs=68.0
Q ss_pred CeEEEEEEEeeccCccccCCCCCCCcEEEEEE--CCeecc-eeeeeeeCCCCCCeEceeEEEEee---cCCCCEEEEEEE
Q 038990 260 PVGILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIP-AKKTSVKMKTLNPEWNEDFKLTVK---DPETQVLQLHVY 333 (505)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l--~~~~~~-~~~T~~~~~t~nP~wne~f~~~v~---~~~~~~L~v~v~ 333 (505)
-...++|+|.++.++... ..++-||.+.+ |+.... ...|+.+....+|.|||.+.|.+. -|....|.+++|
T Consensus 215 ~~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~ 291 (940)
T 2wxf_A 215 LEQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALY 291 (940)
T ss_dssp CCSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEE
T ss_pred cCCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEE
Confidence 346889999999998654 34677877654 554432 234544555778999999998876 245788999999
Q ss_pred EcCCC--C----------CCcccEEEEEECccCCCCC-eeEEEEeccc
Q 038990 334 DWEKV--G----------THDKLGMQVVPLRSLTPNE-TKELTLDLVK 368 (505)
Q Consensus 334 d~d~~--~----------~d~~lG~~~i~l~~l~~~~-~~~~~l~l~~ 368 (505)
+.... + .+..+|.+.+++-+-...- .....+.++.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~~~l~~G~~~l~lw~ 339 (940)
T 2wxf_A 292 AVVEKAKKARSTKKKSKKADCPIAWANLMLFDYKDQLKTGERCLYMWP 339 (940)
T ss_dssp EEC----------------CEEEEEEEEESBCTTSBBCCEEEEEECEE
T ss_pred EecCCccCccccccccccccceEEEEeeeEECCcCccccCCEEEEEee
Confidence 96432 1 2458999999987644321 2234555554
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=87.01 E-value=1.6 Score=36.98 Aligned_cols=111 Identities=18% Similarity=0.257 Sum_probs=74.8
Q ss_pred eEEEEEeeecCCCC-----CCCCCCEEEEEEc--C-eEEEeecccCCCCCccCceEEEEeeCCCC------CCeEEEEEE
Q 038990 387 VGKATEYGAKDLEG-----KHHNNPYAVVICR--G-EQKKTKMIKKCRDPIWNEEFQFDFEEAPL------KEKIHIEVK 452 (505)
Q Consensus 387 ~a~v~v~~a~~L~~-----~~~~dpyv~v~~~--~-~~~kT~v~~~t~nP~wne~f~f~v~~~~~------~~~l~i~V~ 452 (505)
+-++.|.++. +.. .+..+|+.-+.+. . +.+.|.++. ..+|.+|-+-.|.+..... ...+.+++.
T Consensus 19 lfEihi~~~~-~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lELh 96 (156)
T 2yrb_A 19 LFEIHINKVT-FSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEVH 96 (156)
T ss_dssp EEEEEEEEEC-CCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEEE
T ss_pred EEEEEEeEEE-EcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEEEEE
Confidence 3467777665 221 1345675555543 3 445666665 7899999999999864311 237888888
Q ss_pred EccCCccCCCCCccEEEEEeccccccCC-EEeEEEEeCCCC-----CceEEEEEEEE
Q 038990 453 SKRRGLRLRSKESLGYVDINLHDVLHNG-RLKEKYHLINSK-----NGAVQVEIKWK 503 (505)
Q Consensus 453 d~~~~~~~~~d~~lG~~~i~L~~l~~~~-~~~~~~~L~~~~-----~G~i~l~~~~~ 503 (505)
... ...-..+|.+.|+|.++++.. .+...-+|.+.. -|.|...++++
T Consensus 97 qa~----g~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~g~~~~~G~LeywiRL~ 149 (156)
T 2yrb_A 97 QAY----STEYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRLR 149 (156)
T ss_dssp EEC----SSCEEEEEEEEECCSHHHHCCSCEEEEEEECBSSSCCTTSEEEEEEEEEE
T ss_pred Eee----CCCceEEEEEEEEhHHhhCcCCceEEEEEEEcCCCCcceEEEEEEEEEEe
Confidence 764 335579999999999999754 456666776532 47888888776
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=83.18 E-value=2.1 Score=47.45 Aligned_cols=92 Identities=10% Similarity=0.243 Sum_probs=61.2
Q ss_pred ceEEEEEeeecCCCCCCCCCCEEEEEE--cCeE----EEeecccCCCCCccCceEEEEee--CCCCCCeEEEEEEEccCC
Q 038990 386 EVGKATEYGAKDLEGKHHNNPYAVVIC--RGEQ----KKTKMIKKCRDPIWNEEFQFDFE--EAPLKEKIHIEVKSKRRG 457 (505)
Q Consensus 386 ~~a~v~v~~a~~L~~~~~~dpyv~v~~--~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~i~V~d~~~~ 457 (505)
+-..|+|.++.++......+-||++.+ |++. ..|+.+....+|.|||-.+|.+. +.+.+..|.++||+....
T Consensus 217 ~~f~i~i~~~~~~~~~~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~~~ 296 (940)
T 2wxf_A 217 QPFSIELIEGRKVNADERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAVVEK 296 (940)
T ss_dssp SEEEEEEEEEECCCC---CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEEC--
T ss_pred CceEEEEEEecccCCCCCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEEecCC
Confidence 334889999999877666777887765 4432 35665666788999998777764 555667999999985310
Q ss_pred --c-------cCCCCCccEEEEEeccccc
Q 038990 458 --L-------RLRSKESLGYVDINLHDVL 477 (505)
Q Consensus 458 --~-------~~~~d~~lG~~~i~L~~l~ 477 (505)
. .-.....+|.++++|.+-.
T Consensus 297 ~~~~~~~~~~~~~~~~~lg~~~~~lFd~~ 325 (940)
T 2wxf_A 297 AKKARSTKKKSKKADCPIAWANLMLFDYK 325 (940)
T ss_dssp --------------CEEEEEEEEESBCTT
T ss_pred ccCccccccccccccceEEEEeeeEECCc
Confidence 0 0012459999999998744
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 505 | ||||
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 4e-20 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 9e-06 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 1e-19 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 5e-10 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 1e-19 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 2e-08 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 7e-19 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 1e-06 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 5e-17 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 4e-06 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 8e-17 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 9e-17 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 2e-04 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 5e-16 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 2e-04 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 5e-16 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 2e-06 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 2e-15 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 2e-04 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 5e-15 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 1e-14 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 1e-14 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 9e-05 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 8e-14 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 1e-12 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 2e-04 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 2e-12 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 2e-05 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 2e-11 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 9e-05 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 3e-11 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 0.002 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 8e-10 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 2e-08 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 8e-08 |
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 84.8 bits (209), Expect = 4e-20
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNED--FKLT 319
L V +I+A L +D+ G SDPYV++ L ++ +T V KTLNP +NE FK+
Sbjct: 34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93
Query: 320 VKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366
+ + L + VYD+++ HD +G VP+ ++ E DL
Sbjct: 94 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.2 bits (101), Expect = 9e-06
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Query: 377 DKKFERKESEVGKATEYGAKDLEGKHHNNPYAVVICRGEQK---KTKMIKKCRDPIWNEE 433
D + + + +A E A D+ G ++PY V ++K +TK+ +K +P++NE+
Sbjct: 30 DFQNNQLLVGIIQAAELPALDMGGT--SDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQ 87
Query: 434 FQFDFEEAPLKEKI-HIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHL 488
F F + L K + V R + +G + ++ V +E L
Sbjct: 88 FTFKVPYSELGGKTLVMAVYDFD---RFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 82.8 bits (204), Expect = 1e-19
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNEDFKLT 319
+L V V A L+ MD G SDPYV+L L + +KT +LNPEWNE F+
Sbjct: 15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74
Query: 320 VKDPE-TQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKE 361
+K+ + + L + ++DW+ +D +G + L
Sbjct: 75 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDG 117
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.5 bits (133), Expect = 5e-10
Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 395 AKDLEGKHHN---NPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEK 446
AK+L N +PY + ++KTK IK +P WNE F+F +E+ +
Sbjct: 24 AKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRR 83
Query: 447 IHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNG 494
+ +E+ + +G + + + L + + L++ + G
Sbjct: 84 LSVEIWDWD---LTSRNDFMGSLSFGISE-LQKAGVDGWFKLLSQEEG 127
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 82.5 bits (203), Expect = 1e-19
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 4/116 (3%)
Query: 258 KKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFK 317
P G L V ++ A L D DPYVQL+ + K + PEWNE F
Sbjct: 6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQ--KSNVAEGMGTTPEWNETFI 63
Query: 318 LTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSL-TPNETKELTLDLVKNTNP 372
TV + T++ + ++D + D +G +PL + ++VK+
Sbjct: 64 FTVSEGTTEL-KAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEY 118
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 50.9 bits (121), Expect = 2e-08
Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 12/116 (10%)
Query: 395 AKDLEGKHHN---NPYAVVICRGEQKKTKMIKKC-RDPIWNEEFQFDFEEAPLKEKIHIE 450
AK LE +PY + CR + +K+ + + P WNE F F E ++ +
Sbjct: 19 AKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE--GTTELKAK 76
Query: 451 VKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKN---GAVQVEIKWK 503
+ K +++G I L V G + + + G + V + +K
Sbjct: 77 IFDKD---VGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFK 129
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.5 bits (198), Expect = 7e-19
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 264 LHVKVIRAIRLLK---MDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTV 320
V V+RA ++ K D+ DPYV+L +S K+T +NP WNE F+ +
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 321 KDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTN 371
+ VL++ + D V + LG + S+ E KE+ + T
Sbjct: 65 DPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQVTE 114
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.9 bits (108), Expect = 1e-06
Identities = 9/111 (8%), Positives = 29/111 (26%), Gaps = 8/111 (7%)
Query: 394 GAKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRD--PIWNEEFQFDFEEAPLKEKIHIEV 451
D+ +PY + K + + E + + + I +
Sbjct: 19 AFGDMLDT--PDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITL 76
Query: 452 KSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKW 502
E+LG + + + + + +++ ++
Sbjct: 77 MDANYV----MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEV 123
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.1 bits (184), Expect = 5e-17
Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLT 319
L V ++ A L + +PYV++ +R ++T KTL P+WN+ F +
Sbjct: 14 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 73
Query: 320 VKDP---ETQVLQLHVYDWEKVGTH--DKLGMQVVPLRSLTPNETKE 361
++L++ ++D +V + LG ++ L + ++
Sbjct: 74 PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 120
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (103), Expect = 4e-06
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 395 AKDLEGKHHN---NPYAVVI-----CRGEQKKTKMIKKCRDPIWNEEFQFD--FEEAPLK 444
AKDL + NPY + +++TK +KK +P WN+ F + +
Sbjct: 23 AKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRE 82
Query: 445 EKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGR 481
+ I + + R +R E LG + I L L +
Sbjct: 83 RMLEITLWDQAR-VREEESEFLGEILIELETALLDDE 118
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.4 bits (182), Expect = 8e-17
Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 259 KPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKL 318
K VGIL VKV++A LL D G SDP+ L L +R+ K LNPEWN+ F
Sbjct: 3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHT---VYKNLNPEWNKVFTF 59
Query: 319 TVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368
+KD VL++ V+D + D LG +PL S+ + L
Sbjct: 60 PIKDI-HDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKD 108
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.8 bits (183), Expect = 9e-17
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Query: 262 GILHVKVIRAIRLLKMDIFG-ASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTV 320
V + A L MD SDPY+++++ E+ KT V KTL+P ++E F
Sbjct: 22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81
Query: 321 KDPE---TQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETK-ELTLDLVKN 369
L + +++ D +G ++PL + +E K + +++
Sbjct: 82 IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (91), Expect = 2e-04
Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 13/108 (12%)
Query: 395 AKDL----EGKHHNNPYAVVICRGEQKK---TKMIKKCRDPIWNEEFQFD--FEEAPLKE 445
A+ L E ++PY + E+K T++++K DP ++E F F +
Sbjct: 31 ARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQEL 90
Query: 446 KIHIEVKSKRRGLRLRSKESLGYVDINLHDV-LHNGRLKEKYHLINSK 492
+H + S R + +G V I L + L G++ +I+
Sbjct: 91 ALHFTILSFD---RFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGP 135
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 73.3 bits (179), Expect = 5e-16
Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 4/99 (4%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNEDFKLT 319
G L V ++ A L KMD+ G SDPYV++ L +G+R+ KKT++K TLNP +NE F
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 320 VKDPETQVLQLHV--YDWEKVGTHDKLGMQVVPLRSLTP 356
V + Q +Q+ V D++K+G +D +G V S
Sbjct: 85 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGA 123
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.4 bits (91), Expect = 2e-04
Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Query: 386 EVGKATEYGAKDLEGKHHNNPYAVVIC-----RGEQKKTKMIKKCRDPIWNEEFQFDFEE 440
+ +A D+ G ++PY + R ++KKT + K +P +NE F F+
Sbjct: 30 VILEAKNLKKMDVGGL--SDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPF 87
Query: 441 APLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDV 476
++ K+ + V ++ +++G V + +
Sbjct: 88 EQIQ-KVQVVVTVLDYD-KIGKNDAIGKVFVGYNST 121
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 72.8 bits (178), Expect = 5e-16
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNE--DFK 317
L V V++A L K D+ G SDPYV+++L RI KKT VK T N +NE F
Sbjct: 15 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 74
Query: 318 LTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSL 354
+ + E ++ V D E+ ++ +G V+ +
Sbjct: 75 IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE 111
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.7 bits (105), Expect = 2e-06
Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 14/111 (12%)
Query: 395 AKDL---EGKHHNNPYAVV-----ICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEK 446
A+ L + ++PY V R +KKT + K + ++NE F FD L+E
Sbjct: 24 ARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEI 83
Query: 447 -IHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAV 496
+ V R E +G + + + + +
Sbjct: 84 SVEFLVLDSE---RGSRNEVIGRLVLGATAEGS--GGGHWKEICDFPRRQI 129
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 71.1 bits (173), Expect = 2e-15
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 14/125 (11%)
Query: 256 AIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPA-----------KKTSVK 304
I +G L + +++A L+ D G SDP+V++ L R ++T
Sbjct: 12 QINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYV 71
Query: 305 MKTLNPEWNEDFKLTV---KDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKE 361
K+LNPEWN+ + + L++ V+D+++ ++D LG ++ L S + +
Sbjct: 72 QKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTP 131
Query: 362 LTLDL 366
L
Sbjct: 132 RWYPL 136
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.1 bits (90), Expect = 2e-04
Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 22/113 (19%)
Query: 395 AKDLEGKHHN---NPYAVVICRGEQ--------------KKTKMIKKCRDPIWNEEFQFD 437
A++L + +N +P+ V + ++TK ++K +P WN+ +
Sbjct: 27 ARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYK 86
Query: 438 --FEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHL 488
E +K+ + + V R S + LG V I+L H Y L
Sbjct: 87 SISMEQLMKKTLEVTVWDYD---RFSSNDFLGEVLIDLSSTSHLDNTPRWYPL 136
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 69.4 bits (169), Expect = 5e-15
Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 6/105 (5%)
Query: 259 KPVGILHVKVIRAIRLLK--MDIFGASDPYVQLSLSGERIPAKK---TSVKMKTLNPEWN 313
+P L V++I +L K + DP V + + G + NP W+
Sbjct: 2 RPE-RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWD 60
Query: 314 EDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNE 358
+F+ V P+ +++ V D++ +D +G +P SL
Sbjct: 61 MEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY 105
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 69.1 bits (168), Expect = 1e-14
Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKK--TSVKMKTLNPEWNED--FK 317
G+L V +I+A L MD+ G SDPYV+ SL E KK TS+K TLNP +NE F
Sbjct: 20 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 79
Query: 318 LTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETK 360
+ + E L + V D++ +G ++ +G+ V + P+ +
Sbjct: 80 VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGRE 122
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 68.7 bits (167), Expect = 1e-14
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 6/114 (5%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKK--TSVKMKTLNPEWNEDFKLT 319
G L V +IR + L MD G SDP+V+L L + K T +K KTLNPE+NE+F
Sbjct: 15 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74
Query: 320 VK--DPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTN 371
+K D + L + V+D++ ++D +G + + + E + + +KN +
Sbjct: 75 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK--GERLKHWYECLKNKD 126
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.2 bits (93), Expect = 9e-05
Identities = 21/110 (19%), Positives = 46/110 (41%), Gaps = 12/110 (10%)
Query: 395 AKDL---EGKHHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEK 446
L + +++P+ + + + KT++ KK +P +NEEF +D + + L +K
Sbjct: 24 CVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKK 83
Query: 447 IHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAV 496
+S + +G + + RLK Y + +K+ +
Sbjct: 84 SLDISVWDYD--IGKSNDYIGGCQLGISAK--GERLKHWYECLKNKDKKI 129
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 66.1 bits (160), Expect = 8e-14
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVK 321
L V++++A+ L D G SDPYV++ L +R +T V KTLNP +NE F+ +V
Sbjct: 18 DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVP 77
Query: 322 DPE--TQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTL 364
E + L VYD+++ HD +G V+ + + L
Sbjct: 78 LAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL 122
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.0 bits (152), Expect = 1e-12
Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 6/108 (5%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLS-LSGERIPAKKTSVKMKTLNPEWNEDFKLTV 320
L V + A + + G D YVQ S + +T++K + L+ W E L +
Sbjct: 26 AELFVTRLEA---VTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL 82
Query: 321 KDPETQ--VLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366
+ E L L + ++ H G + L + +L
Sbjct: 83 AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGEL 130
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (91), Expect = 2e-04
Identities = 13/105 (12%), Positives = 23/105 (21%), Gaps = 6/105 (5%)
Query: 395 AKDLEGKHHNNPYAVVICRGEQK----KTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIE 450
A + Y +T + K+ W E E +
Sbjct: 35 AVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEE--ELPTATL 92
Query: 451 VKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGA 495
+ R R G + + L + L S +
Sbjct: 93 TLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSGPSS 137
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.1 bits (150), Expect = 2e-12
Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 10/120 (8%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVK 321
L + VI A + PYV++++ G+ KKT T +P+W + + V
Sbjct: 6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQS---KKTEKCNNTNSPKWKQPLTVIVT 62
Query: 322 DPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPN-----ETKELTLDLVKNTNPNDPQ 376
L V+ + + + LG + + + E +TL L + P +
Sbjct: 63 PV--SKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETI 120
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (98), Expect = 2e-05
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 11/104 (10%)
Query: 395 AKDLEGKHHN---NPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEV 451
AK E K + +PY V G+ KKT+ P W + K+H V
Sbjct: 15 AKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP---VSKLHFRV 71
Query: 452 KSKRRGLRLRSKESLGYVDINLHDVL--HNGRLKEKYHLINSKN 493
S + L+S LG +++++ L +N +L+E +
Sbjct: 72 WSHQT---LKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGG 112
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.0 bits (142), Expect = 2e-11
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 281 GASDPYVQLSLSGERIPA--KKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKV 338
AS P+ + + K K T+ PEW F + + +V+Q+ + +
Sbjct: 22 DASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEG--RVIQIVLMRAAED 79
Query: 339 GTHD-KLGMQVVPLRSLTPNETKELTLDLVK 368
+ +G+ V+ R N E LDL
Sbjct: 80 PMSEVTVGVSVLAERCKKNNGKAEFWLDLQP 110
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.1 bits (93), Expect = 9e-05
Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 12/103 (11%)
Query: 405 NPYAVVICRGE-----QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLR 459
P+ V + K K P W F + E I++ R
Sbjct: 25 QPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDA-----HIYEGRVIQIVLMRAAED 79
Query: 460 LRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKW 502
S+ ++G + +NG+ + L V + +++
Sbjct: 80 PMSEVTVGVSVLAERCKKNNGKAEFWLDL--QPQAKVLMCVQY 120
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 58.7 bits (141), Expect = 3e-11
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 17/118 (14%)
Query: 262 GILHVKVIRAIRLLKMDIF-----------GASDPYVQLSLSGERIPAKKTSVKMKTLNP 310
G+L +K+ A+ L DPY+ L++ RI +T+ K KT +P
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRI--GQTATKQKTNSP 63
Query: 311 EWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLT--PNETKELTLDL 366
W+++F V + L V+ +G D + + L + E +DL
Sbjct: 64 AWHDEFVTDVCNGRKIELA--VFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL 119
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 36.4 bits (83), Expect = 0.002
Identities = 21/128 (16%), Positives = 39/128 (30%), Gaps = 16/128 (12%)
Query: 386 EVGKATEYGAKDLEGKHH---------NNPYAVVICRG-EQKKTKMIKKCRDPIWNEEFQ 435
++ +A + +PY + +T +K P W++EF
Sbjct: 11 KICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFV 70
Query: 436 FDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGA 495
D KI + V + + + I ++L NG + + G
Sbjct: 71 TDVCNGR---KIELAVFHDA---PIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEPEGK 124
Query: 496 VQVEIKWK 503
V V I
Sbjct: 125 VYVIIDLS 132
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.6 bits (131), Expect = 8e-10
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 15/100 (15%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSG-----ERIPAKKTSVKMKTLNPEWNEDFKL 318
L + VI L + + YV++ L G +R K S ++NP W E+ +
Sbjct: 3 LSITVISGQFLSERSV----RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58
Query: 319 T--VKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTP 356
+ PE L++ V + + LG +++P+ +L
Sbjct: 59 FEKILMPELASLRVAVMEEG----NKFLGHRIIPINALNS 94
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 50.5 bits (120), Expect = 2e-08
Identities = 18/97 (18%), Positives = 40/97 (41%), Gaps = 9/97 (9%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVK 321
+L V V +A + + YV L + K T++ ++ P W +DF +
Sbjct: 2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNV----KSTTIAVRGSQPSWEQDFMFEIN 54
Query: 322 DPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNE 358
+ + + V++ + +G +PLR++ +
Sbjct: 55 RLDLGLT-VEVWNKGLI-WDTMVGTVWIPLRTIRQSN 89
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.0 bits (116), Expect = 8e-08
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 7/87 (8%)
Query: 395 AKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSK 454
AK + N Y V + K T + + P W ++F F+ L + + K
Sbjct: 11 AKFDGAQEKFNTY-VTLKVQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKGL 69
Query: 455 RRGLRLRSKESLGYVDINLHDVLHNGR 481
+G V I L + +
Sbjct: 70 ------IWDTMVGTVWIPLRTIRQSNE 90
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 505 | |||
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.81 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.78 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.77 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.76 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.75 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.75 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.75 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.74 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.74 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.73 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.71 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.71 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.71 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.7 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.69 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.68 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.67 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.66 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.66 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.66 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.65 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.65 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.63 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.62 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.61 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.61 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.59 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.57 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.56 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.53 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.52 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.52 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.51 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.49 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.47 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.44 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.4 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.33 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.33 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.21 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 95.17 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 86.68 |
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=2.2e-20 Score=157.04 Aligned_cols=102 Identities=40% Similarity=0.627 Sum_probs=92.0
Q ss_pred CCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCC
Q 038990 259 KPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKV 338 (505)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~ 338 (505)
++.|+|+|+|++|++|+.++..|.+||||++++++++ ++|+++++|.||.|||+|.|.+.++ .+.|.++|||++..
T Consensus 3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~---~~T~~~~~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~ 78 (126)
T d2ep6a1 3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDR---LQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGD 78 (126)
T ss_dssp CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEE---EECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETT
T ss_pred CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeE---EEEEeeCCceeEEEEEEEEEEEecc-CceeEEEEEEccCC
Confidence 4789999999999999999999999999999999865 5899999999999999999999765 47899999999999
Q ss_pred CCCcccEEEEEECccCCCCCeeEEEE
Q 038990 339 GTHDKLGMQVVPLRSLTPNETKELTL 364 (505)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~~~~~~~~l 364 (505)
++|++||++.++++++..+..+++++
T Consensus 79 ~~d~~lG~~~i~l~~l~~~~~~~~~l 104 (126)
T d2ep6a1 79 KPPDFLGKVAIPLLSIRDGQPNCYVL 104 (126)
T ss_dssp EEEEECCBCEEEGGGCCSSCCEECCC
T ss_pred cCcceEEEEEEEHHHCCCCCceEEEc
Confidence 99999999999999998877665444
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=6.8e-19 Score=147.80 Aligned_cols=112 Identities=13% Similarity=0.279 Sum_probs=98.5
Q ss_pred EEEEEeeecCCCCC------CCCCCEEEEEEcC---eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEGK------HHNNPYAVVICRG---EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~~------~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~ 458 (505)
.+|+|++|+||+.. +.+||||++++++ ++++|++++++.||.|||+|.|.+.+. ....|.|+|||++
T Consensus 5 l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~-~~~~L~v~V~d~d--- 80 (126)
T d1rlwa_ 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMDAN--- 80 (126)
T ss_dssp EEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCEEEEEEEECC---
T ss_pred EEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCc-ccCcEEEEEEECC---
Confidence 37999999999863 5799999999976 457999999999999999999999765 3458999999987
Q ss_pred cCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEEEe
Q 038990 459 RLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWKA 504 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~~~ 504 (505)
..++++||++.++|+++..+...+.||+|.+.++|+|++++++.|
T Consensus 81 -~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~g~i~~~l~~~~ 125 (126)
T d1rlwa_ 81 -YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVAS 125 (126)
T ss_dssp -SSCCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEECCC
T ss_pred -CCCCCeEEEEEEEHHHccCCCeEEEEEEccCCCeEEEEEEEEEEe
Confidence 456899999999999998888889999999888999999999865
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=8.9e-19 Score=147.08 Aligned_cols=107 Identities=27% Similarity=0.430 Sum_probs=94.4
Q ss_pred eEEEEEEEeeccCcccc---CCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCC
Q 038990 261 VGILHVKVIRAIRLLKM---DIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEK 337 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~---d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~ 337 (505)
.+.|+|+|++|+||+.. |..|.+||||++++++....+++|+++.++.||.|||+|.|.+.+.....|.++|||++.
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~ 81 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence 47899999999999874 456899999999998765556799999999999999999999987777899999999986
Q ss_pred CCCCcccEEEEEECccCCCCCeeEEEEeccc
Q 038990 338 VGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
.+|++||++.++|+++..+..+..|++|.+
T Consensus 82 -~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 111 (126)
T d1rlwa_ 82 -VMDETLGTATFTVSSMKVGEKKEVPFIFNQ 111 (126)
T ss_dssp -SCCEEEEEEEEEGGGSCTTCEEEEEEEETT
T ss_pred -CCCCeEEEEEEEHHHccCCCeEEEEEEccC
Confidence 468999999999999999988889998843
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=1.1e-18 Score=149.95 Aligned_cols=111 Identities=32% Similarity=0.455 Sum_probs=97.3
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHVYD 334 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v~d 334 (505)
+....+.|+|+|++|+||+.++..|.+||||++++.+......+|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 29 y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d 108 (143)
T d1rsya_ 29 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD 108 (143)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred EeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEE
Confidence 4556789999999999999999889999999999965444457999999999999999999988532 46789999999
Q ss_pred cCCCCCCcccEEEEEECccCCCCCeeEEEEecc
Q 038990 335 WEKVGTHDKLGMQVVPLRSLTPNETKELTLDLV 367 (505)
Q Consensus 335 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~ 367 (505)
++..+++++||++.++|+++..+.....|++|.
T Consensus 109 ~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 141 (143)
T d1rsya_ 109 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp CCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred cCCCCCCcEEEEEEEEchhccCCCCCccEEeCC
Confidence 999999999999999999999888888899874
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.75 E-value=1.8e-18 Score=146.34 Aligned_cols=108 Identities=31% Similarity=0.498 Sum_probs=92.3
Q ss_pred CeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeecCC-CCEEEEEEEEcC
Q 038990 260 PVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKDPE-TQVLQLHVYDWE 336 (505)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~~~-~~~L~v~v~d~d 336 (505)
..+.|.|+|++|+||+.+|..|.+||||++++.+. ...+++|+++++|.||.|||+|.|.+.... ...|.|+|||+|
T Consensus 13 ~~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d 92 (132)
T d1a25a_ 13 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWD 92 (132)
T ss_dssp SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECC
T ss_pred cCCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecC
Confidence 35789999999999999999999999999998432 233578999999999999999999987543 457999999999
Q ss_pred CCCCCcccEEEEEECccCCCCCeeEEEEeccc
Q 038990 337 KVGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
..++|++||++.++++++..+ ....|++|..
T Consensus 93 ~~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~ 123 (132)
T d1a25a_ 93 LTSRNDFMGSLSFGISELQKA-GVDGWFKLLS 123 (132)
T ss_dssp SSSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred CCCCCcEeEEEEEeHHHcCCC-CCCeEEECCC
Confidence 999999999999999998765 4567888854
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=2e-18 Score=144.82 Aligned_cols=109 Identities=20% Similarity=0.337 Sum_probs=94.5
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCC
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKE 464 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~ 464 (505)
.+|+|++|++|+.. +.+||||++++++++++|+++++|.||.|||.|+|.+.++ .+.|.|+|||++. +++++
T Consensus 8 L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~--~~~L~i~V~d~~~---~~~d~ 82 (126)
T d2ep6a1 8 LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI--HDVLEVTVFDEDG---DKPPD 82 (126)
T ss_dssp EEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT--TCEEEEEEEEEET---TEEEE
T ss_pred EEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEecc--CceeEEEEEEccC---CcCcc
Confidence 48999999999863 5899999999999999999999999999999999999865 3689999999874 67789
Q ss_pred ccEEEEEeccccccCCEEeEEEEeCCC-----CCceEEEEEEEE
Q 038990 465 SLGYVDINLHDVLHNGRLKEKYHLINS-----KNGAVQVEIKWK 503 (505)
Q Consensus 465 ~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~~~ 503 (505)
+||++.++|+++..+. .+||.|... .+|+|+|++++-
T Consensus 83 ~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~i 124 (126)
T d2ep6a1 83 FLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLI 124 (126)
T ss_dssp ECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred eEEEEEEEHHHCCCCC--ceEEEccccCCCCceeEEEEEEEEEE
Confidence 9999999999987654 588888642 369999998874
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.75 E-value=2.1e-18 Score=146.77 Aligned_cols=108 Identities=30% Similarity=0.473 Sum_probs=90.6
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeC-CCCCCeEceeEEEEeecCCCCEEEEEEEEc
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKM-KTLNPEWNEDFKLTVKDPETQVLQLHVYDW 335 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~-~t~nP~wne~f~~~v~~~~~~~L~v~v~d~ 335 (505)
...|.|+|+|+|++|++|+.++..|++||||++++++.. .+|++++ ++.||.|||+|.|.+.+. ...|.|+|||+
T Consensus 5 ~~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~---~~t~~~~~~~~nP~Wne~f~f~v~~~-~~~L~v~V~d~ 80 (136)
T d1wfja_ 5 SSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQD---QKSNVAEGMGTTPEWNETFIFTVSEG-TTELKAKIFDK 80 (136)
T ss_dssp CCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCE---EECCCCTTCCSSCEEEEEEEEEEESS-CCEEEEEECCS
T ss_pred CCCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeee---EEEEEEecCCCcEEEeeEEEEEEcCc-cceEEEEEEEe
Confidence 456899999999999999999988999999999998765 3666665 689999999999999764 46799999999
Q ss_pred CCCCCCcccEEEEEECccCCCC-CeeEEEEeccc
Q 038990 336 EKVGTHDKLGMQVVPLRSLTPN-ETKELTLDLVK 368 (505)
Q Consensus 336 d~~~~d~~lG~~~i~l~~l~~~-~~~~~~l~l~~ 368 (505)
|..++|++||++.++|.++... .....|+.+.+
T Consensus 81 d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~ 114 (136)
T d1wfja_ 81 DVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK 114 (136)
T ss_dssp SSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE
T ss_pred cCCCCCCEEEEEEEEhHHhcccCCcCcEEEEecC
Confidence 9999999999999999987543 33445666543
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=2.1e-18 Score=145.56 Aligned_cols=113 Identities=31% Similarity=0.446 Sum_probs=92.9
Q ss_pred CCcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEEE
Q 038990 256 AIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHVY 333 (505)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v~ 333 (505)
.+....+.|.|+|++|+||+.++..|.+||||++++.+....+++|++++++.||.|||+|.|.+... ....|.|+||
T Consensus 12 ~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~ 91 (130)
T d1dqva1 12 RYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVY 91 (130)
T ss_dssp ECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEE
T ss_pred EEECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEE
Confidence 35567799999999999999999889999999999976555567999999999999999999998643 3567999999
Q ss_pred EcCCCCCCcccEEEEEECcc-CCCC-CeeEEEEeccc
Q 038990 334 DWEKVGTHDKLGMQVVPLRS-LTPN-ETKELTLDLVK 368 (505)
Q Consensus 334 d~d~~~~d~~lG~~~i~l~~-l~~~-~~~~~~l~l~~ 368 (505)
|++.+++|++||++.+++.. +... .....|++|..
T Consensus 92 d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~ 128 (130)
T d1dqva1 92 DFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE 128 (130)
T ss_dssp ECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred EcCCCCCCceEEEEEECchhhhhcCCCCCcEEEeccc
Confidence 99999999999999998653 3222 23446777754
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.74 E-value=5.7e-18 Score=144.02 Aligned_cols=113 Identities=23% Similarity=0.448 Sum_probs=97.2
Q ss_pred eEEEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeeccc-CCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCC
Q 038990 387 VGKATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIK-KCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRS 462 (505)
Q Consensus 387 ~a~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~ 462 (505)
+.+|+|++|++|+.. +.+||||++++++..++|++++ ++.||+|||+|+|.+.+. ...|+|+|||++. .+.
T Consensus 11 ~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~--~~~L~v~V~d~d~---~~~ 85 (136)
T d1wfja_ 11 TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG--TTELKAKIFDKDV---GTE 85 (136)
T ss_dssp EEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESS--CCEEEEEECCSSS---CTT
T ss_pred EEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCc--cceEEEEEEEecC---CCC
Confidence 358999999999864 6899999999999999999987 589999999999999875 3579999999984 678
Q ss_pred CCccEEEEEeccccccCC-EEeEEEEeCCCC--CceEEEEEEEEe
Q 038990 463 KESLGYVDINLHDVLHNG-RLKEKYHLINSK--NGAVQVEIKWKA 504 (505)
Q Consensus 463 d~~lG~~~i~L~~l~~~~-~~~~~~~L~~~~--~G~i~l~~~~~~ 504 (505)
|++||++.|+|.++.... ....||++...+ .|+|+|+++|+|
T Consensus 86 d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~p 130 (136)
T d1wfja_ 86 DDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKP 130 (136)
T ss_dssp TCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred CCEEEEEEEEhHHhcccCCcCcEEEEecCCCccCEEEEEEEEEEe
Confidence 999999999999987754 447899996443 699999999998
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.73 E-value=1.8e-17 Score=140.64 Aligned_cols=109 Identities=22% Similarity=0.327 Sum_probs=94.6
Q ss_pred EEEEEeeecCCCC--------------CCCCCCEEEEEEcCeE-EEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEE
Q 038990 388 GKATEYGAKDLEG--------------KHHNNPYAVVICRGEQ-KKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVK 452 (505)
Q Consensus 388 a~v~v~~a~~L~~--------------~~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~ 452 (505)
.+|+|.+|++|+. .+.+||||++++++.. .+|++++++.||.|||+|.|.+.+. +.|.|+||
T Consensus 8 L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~~---~~l~i~V~ 84 (136)
T d1gmia_ 8 LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG---RKIELAVF 84 (136)
T ss_dssp EEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE---CEEEEEEE
T ss_pred EEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEecC---CceEEEEE
Confidence 4899999999974 2478999999998866 4899999999999999999999764 68999999
Q ss_pred EccCCccCCCCCccEEEEEeccccccCC--EEeEEEEeCCCCCceEEEEEEEEe
Q 038990 453 SKRRGLRLRSKESLGYVDINLHDVLHNG--RLKEKYHLINSKNGAVQVEIKWKA 504 (505)
Q Consensus 453 d~~~~~~~~~d~~lG~~~i~L~~l~~~~--~~~~~~~L~~~~~G~i~l~~~~~~ 504 (505)
|++. +++|++||.+.++|+++..+. ..+.||+|. ++|+|+++++++|
T Consensus 85 d~~~---~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~--p~G~v~l~v~~~~ 133 (136)
T d1gmia_ 85 HDAP---IGYDDFVANCTIQFEELLQNGSRHFEDWIDLE--PEGKVYVIIDLSG 133 (136)
T ss_dssp ECCS---SSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB--SSCEEEEEEEEEE
T ss_pred EecC---CCCceeEEEEEEEHHHhhhcCCcceeEEEeCC--CCcEEEEEEEEEe
Confidence 9984 678999999999999998764 567899997 4799999999886
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1.7e-17 Score=140.31 Aligned_cols=90 Identities=21% Similarity=0.348 Sum_probs=80.7
Q ss_pred eEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCC
Q 038990 261 VGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGT 340 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~ 340 (505)
.+.|.|+|++|++++.++..+.+||||++.++++. ++|++++++.||.|||.|.|.+.. .+.|.|+|||+|.+++
T Consensus 5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~---~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~~~ 79 (133)
T d2nq3a1 5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQS---KKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKS 79 (133)
T ss_dssp CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEE---EECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSC
T ss_pred ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeE---EeeEEEEecccEEEcceEEEEEEe--cceeEEEEEEccCCCC
Confidence 38899999999999998888899999999999875 589999999999999999999854 4689999999999999
Q ss_pred CcccEEEEEECccCC
Q 038990 341 HDKLGMQVVPLRSLT 355 (505)
Q Consensus 341 d~~lG~~~i~l~~l~ 355 (505)
|++||++.++|.++.
T Consensus 80 d~~iG~~~i~L~~l~ 94 (133)
T d2nq3a1 80 DVLLGTAALDIYETL 94 (133)
T ss_dssp CEEEEEEEEEHHHHH
T ss_pred CceEEEEEEEHHHhh
Confidence 999999999999874
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.71 E-value=3e-17 Score=139.32 Aligned_cols=104 Identities=27% Similarity=0.398 Sum_probs=89.4
Q ss_pred CeEEEEEEEeeccCccccC-----------CCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEE
Q 038990 260 PVGILHVKVIRAIRLLKMD-----------IFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVL 328 (505)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d-----------~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L 328 (505)
..|.|+|+|++|++|++.+ ..+.+||||++++++... .+|++++++.||.|||+|.|.+.+ .+.|
T Consensus 4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~--~~T~~~~~t~~P~Wne~f~f~v~~--~~~l 79 (136)
T d1gmia_ 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRI--GQTATKQKTNSPAWHDEFVTDVCN--GRKI 79 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEE--EECCCCSSCSSCEEEEEEEEEEEE--ECEE
T ss_pred EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcC--cEeeEEcCCCCccCccEEEEEEec--CCce
Confidence 4699999999999998754 346789999999987653 578999999999999999999975 3689
Q ss_pred EEEEEEcCCCCCCcccEEEEEECccCCCCC--eeEEEEecc
Q 038990 329 QLHVYDWEKVGTHDKLGMQVVPLRSLTPNE--TKELTLDLV 367 (505)
Q Consensus 329 ~v~v~d~d~~~~d~~lG~~~i~l~~l~~~~--~~~~~l~l~ 367 (505)
.++|||++.+++|++||++.++|+++..+. ..+.|++|.
T Consensus 80 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~ 120 (136)
T d1gmia_ 80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE 120 (136)
T ss_dssp EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB
T ss_pred EEEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCC
Confidence 999999999999999999999999997654 456788874
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=2.6e-18 Score=147.39 Aligned_cols=109 Identities=27% Similarity=0.416 Sum_probs=92.5
Q ss_pred eEEEEEEEeeccCccccCCCCCCCcEEEEEECCee-----------cceeeeeeeCCCCCCeEceeEEEEeec---CCCC
Q 038990 261 VGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER-----------IPAKKTSVKMKTLNPEWNEDFKLTVKD---PETQ 326 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~-----------~~~~~T~~~~~t~nP~wne~f~~~v~~---~~~~ 326 (505)
.|.|.|+|++|+||+.++..|.+||||++++.+.. ..++||++++++.||.|||+|.|.... ....
T Consensus 17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~ 96 (142)
T d1rh8a_ 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence 47899999999999999999999999999995322 112579999999999999999997432 2466
Q ss_pred EEEEEEEEcCCCCCCcccEEEEEECccCCCCCeeEEEEecccc
Q 038990 327 VLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKN 369 (505)
Q Consensus 327 ~L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~ 369 (505)
.|.|+|||+|.+++|++||++.++|+++..+.....|++|...
T Consensus 97 ~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~ 139 (142)
T d1rh8a_ 97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139 (142)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred EEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence 8999999999999999999999999999887777788888654
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=7.2e-17 Score=137.36 Aligned_cols=111 Identities=23% Similarity=0.365 Sum_probs=91.1
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCC-CCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecC---CCCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGA-SDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP---ETQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~-~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~---~~~~L~v~v 332 (505)
+....+.|.|+|++|+||+.++..+. +||||++++.+....+++|++++++.||.|||+|.|..... ....|+|+|
T Consensus 17 Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V 96 (138)
T d1ugka_ 17 YNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTI 96 (138)
T ss_dssp EEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEE
T ss_pred EeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEE
Confidence 45567899999999999999887654 79999999966554557899999999999999999974332 245899999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCC-eeEEEEecc
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNE-TKELTLDLV 367 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~-~~~~~l~l~ 367 (505)
||+|.+++|++||++.++|+++...+ ..++|.++.
T Consensus 97 ~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~ 132 (138)
T d1ugka_ 97 LSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREII 132 (138)
T ss_dssp EEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred EECCCCCCCcEEEEEEEEcccccCCCCeEEEEeecc
Confidence 99999999999999999999986544 455666654
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.69 E-value=1.8e-17 Score=140.10 Aligned_cols=106 Identities=22% Similarity=0.381 Sum_probs=88.7
Q ss_pred ceEEEEEeeecCCCCC---CCCCCEEEEEE-----cCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCC
Q 038990 386 EVGKATEYGAKDLEGK---HHNNPYAVVIC-----RGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRG 457 (505)
Q Consensus 386 ~~a~v~v~~a~~L~~~---~~~dpyv~v~~-----~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~ 457 (505)
+...|+|++|+||+.. +.+||||++++ +..+++|+++++|.||+|||.|.|.+.....+..|.|+|||++.
T Consensus 15 ~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~- 93 (132)
T d1a25a_ 15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL- 93 (132)
T ss_dssp SEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS-
T ss_pred CEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC-
Confidence 3468999999999763 57899999999 33457999999999999999999999776445589999999984
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCce
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGA 495 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~ 495 (505)
++++++||++.++|+++..+ ..++||+|.+.+.|+
T Consensus 94 --~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~ge 128 (132)
T d1a25a_ 94 --TSRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEGE 128 (132)
T ss_dssp --SSCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHHT
T ss_pred --CCCCcEeEEEEEeHHHcCCC-CCCeEEECCCCCCCc
Confidence 67889999999999998754 468999998765554
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.1e-16 Score=136.31 Aligned_cols=109 Identities=20% Similarity=0.223 Sum_probs=92.7
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe-ecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE-RIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHVY 333 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~-~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v~ 333 (505)
++...+.|.|+|++|++|+. .|.+||||++++.+. ....++|++++++.||.|||+|.|.+... ....|.|+||
T Consensus 21 y~~~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~ 97 (138)
T d1wfma_ 21 YDCQKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLR 97 (138)
T ss_dssp EETTTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEE
T ss_pred ECCCCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEe
Confidence 45567899999999999954 467899999999653 23346899999999999999999998643 3678999999
Q ss_pred EcCCCCCCcccEEEEEECccCCCCCeeEEEEeccc
Q 038990 334 DWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 334 d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
|++.++++++||++.|+|.++......+.|++|..
T Consensus 98 d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~ 132 (138)
T d1wfma_ 98 TCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT 132 (138)
T ss_dssp ECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred eecccccceeeeEEEEEhHHccCCCCceEeEeCCC
Confidence 99999999999999999999988777888998854
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.67 E-value=1.8e-16 Score=132.21 Aligned_cols=108 Identities=18% Similarity=0.201 Sum_probs=90.0
Q ss_pred EEEEEeeecCCCCCCCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCccE
Q 038990 388 GKATEYGAKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLG 467 (505)
Q Consensus 388 a~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~lG 467 (505)
..|+|.+|++|.+.+..||||++++++.+.+|+++++ .||+|||.|.|.+.++ ++.|.|+|||++ ..+|++||
T Consensus 4 L~V~v~~a~~l~~~~~~dpYv~l~~~~~k~~T~~~k~-~nP~Wne~f~f~v~~~--~~~L~v~V~d~~----~~~d~~lG 76 (128)
T d2cjta1 4 LCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVRG-SQPSWEQDFMFEINRL--DLGLTVEVWNKG----LIWDTMVG 76 (128)
T ss_dssp EEEEEEEEECSSCGGGCEEEEEEEETTEEEECCCEES-SSCEEEEEEEEEECCC--SSEEEEEEEECC----SSCEEEEE
T ss_pred EEEEEEEEECCCCCCCcCeEEEEEeCCEEEEEEEecC-CCCeEEEEEEEeeccc--cceEEEEEEeCC----CcCCcceE
Confidence 4799999999999889999999999998889988864 5999999999999876 468999999987 34689999
Q ss_pred EEEEeccccccC--CEEeEEEEeCCCC--------------CceEEEEEEE
Q 038990 468 YVDINLHDVLHN--GRLKEKYHLINSK--------------NGAVQVEIKW 502 (505)
Q Consensus 468 ~~~i~L~~l~~~--~~~~~~~~L~~~~--------------~G~i~l~~~~ 502 (505)
++.|+|+++... ....+||+|.... ..+|.++++|
T Consensus 77 ~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~ 127 (128)
T d2cjta1 77 TVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF 127 (128)
T ss_dssp EEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred EEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEc
Confidence 999999999764 2457899995421 4567777766
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.66 E-value=1.1e-16 Score=135.01 Aligned_cols=103 Identities=24% Similarity=0.462 Sum_probs=81.2
Q ss_pred EEEEEEEeeccCcccc--CCCCCCCcEEEEEECCee--cceeeeeeeC-CCCCCeEceeEEEEeecCCCCEEEEEEEEcC
Q 038990 262 GILHVKVIRAIRLLKM--DIFGASDPYVQLSLSGER--IPAKKTSVKM-KTLNPEWNEDFKLTVKDPETQVLQLHVYDWE 336 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~--d~~g~~dpyv~v~l~~~~--~~~~~T~~~~-~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d 336 (505)
..|+|+|++|++|+.. +..+++||||++++.+.. ..+++|++++ +++||.|||+|.|.+..+....|.++|||+|
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d 83 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD 83 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence 4799999999999754 456789999999985421 2335787765 4579999999999997777788999999999
Q ss_pred CCCCCcccEEEEEECccCCCCCeeEEEEecc
Q 038990 337 KVGTHDKLGMQVVPLRSLTPNETKELTLDLV 367 (505)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~ 367 (505)
..++|++||++.++|+++..+ ..|++|.
T Consensus 84 ~~~~d~~iG~~~i~l~~l~~g---~~~~~L~ 111 (131)
T d1qasa2 84 SSSKNDFIGQSTIPWNSLKQG---YRHVHLL 111 (131)
T ss_dssp TTTCCEEEEEEEEEGGGBCCE---EEEEEEE
T ss_pred CCCCCcEEEEEEEEEeccCCC---CEEEECC
Confidence 999999999999999999765 2356653
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.2e-16 Score=133.66 Aligned_cols=109 Identities=22% Similarity=0.346 Sum_probs=85.2
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEE-eecC--CCCEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLT-VKDP--ETQVLQLH 331 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~-v~~~--~~~~L~v~ 331 (505)
+....+.|.|+|++|+||+.++..+.+||||++++.+. ...+++|++++++.||.|||+|.|. +... ....|.|+
T Consensus 9 y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~ 88 (125)
T d2bwqa1 9 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEIT 88 (125)
T ss_dssp EETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEE
T ss_pred EECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEE
Confidence 45566899999999999999998899999999999442 3345789999999999999999996 4322 35689999
Q ss_pred EEEcCCC--CCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 332 VYDWEKV--GTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 332 v~d~d~~--~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
|||++.. +++++||++.++++++..... ..|++|
T Consensus 89 v~d~~~~~~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L 124 (125)
T d2bwqa1 89 LWDQARVREEESEFLGEILIELETALLDDE-PHWYKL 124 (125)
T ss_dssp EEEC-------CEEEEEEEEEGGGCCCSSC-EEEEEC
T ss_pred EEECCCCCCCCCeeEEEEEEEchhcCCCCC-CEEEeC
Confidence 9999975 345699999999999886643 357765
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.66 E-value=2.6e-16 Score=133.91 Aligned_cols=98 Identities=33% Similarity=0.402 Sum_probs=78.0
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEEC--CeecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLS--GERIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~--~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v 332 (505)
+....+.|.|+|++|+||+.++..+.+||||++++. +....+++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 10 Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v 89 (138)
T d1w15a_ 10 YQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLV 89 (138)
T ss_dssp EETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEE
T ss_pred EcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEE
Confidence 344568999999999999999988999999999983 3344456899999999999999999998543 345799999
Q ss_pred EEcCCCCCCcccEEEEEECccC
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSL 354 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l 354 (505)
||++..+++++||++.+++...
T Consensus 90 ~d~~~~~~~~~iG~~~i~l~~~ 111 (138)
T d1w15a_ 90 LDSERGSRNEVIGRLVLGATAE 111 (138)
T ss_dssp EECCTTSCCEEEEEEEESTTCC
T ss_pred EeCCCCCCCCEEEEEEEcchhC
Confidence 9999999999999999999764
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=2.8e-16 Score=132.59 Aligned_cols=112 Identities=22% Similarity=0.308 Sum_probs=91.1
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCC
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKE 464 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~ 464 (505)
.+|+|.+|+++... +.+||||++.++++.++|++++++.||.|||.|+|.+... +.|+|+|||++. +++|+
T Consensus 8 L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~---~~l~~~V~d~d~---~~~d~ 81 (133)
T d2nq3a1 8 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPV---SKLHFRVWSHQT---LKSDV 81 (133)
T ss_dssp EEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECTT---CEEEEEEEECCS---SSCCE
T ss_pred EEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEec---ceeEEEEEEccC---CCCCc
Confidence 47999999999763 4789999999999999999999999999999999999653 589999999985 78899
Q ss_pred ccEEEEEeccccccC--C---EEeEEEEeCCC-----CCceEEEEEEEEeC
Q 038990 465 SLGYVDINLHDVLHN--G---RLKEKYHLINS-----KNGAVQVEIKWKAI 505 (505)
Q Consensus 465 ~lG~~~i~L~~l~~~--~---~~~~~~~L~~~-----~~G~i~l~~~~~~~ 505 (505)
+||++.++|+++... . ....++.|.+. ..|+|.|.++.-.|
T Consensus 82 ~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~~~ 132 (133)
T d2nq3a1 82 LLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL 132 (133)
T ss_dssp EEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred eEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEeeEEc
Confidence 999999999998652 2 22334444432 25999998876543
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=5.3e-16 Score=134.92 Aligned_cols=98 Identities=37% Similarity=0.559 Sum_probs=84.7
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECC--eecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSG--ERIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~--~~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v 332 (505)
+....+.|.|+|++|+||+..+..+.+||||++++.+ .....++|++++++.||.|||+|.|.+... ....|.++|
T Consensus 20 Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v 99 (157)
T d1uowa_ 20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV 99 (157)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred EcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEE
Confidence 4456789999999999999999889999999999854 334456899999999999999999998654 256899999
Q ss_pred EEcCCCCCCcccEEEEEECccC
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSL 354 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l 354 (505)
||++.++++++||++.+++...
T Consensus 100 ~d~~~~~~~~~iG~~~i~l~~~ 121 (157)
T d1uowa_ 100 LDYDKIGKNDAIGKVFVGYNST 121 (157)
T ss_dssp EECCSSSCCCEEEEEEEETTCC
T ss_pred cccCCCCCCceeEEEEEecccC
Confidence 9999999999999999999753
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.63 E-value=8.6e-16 Score=128.06 Aligned_cols=98 Identities=21% Similarity=0.288 Sum_probs=82.1
Q ss_pred EEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCC
Q 038990 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTH 341 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d 341 (505)
+.|.|+|++|++|.+++ +.||||++++++.+ .+|.+++ +.||.|||+|.|.+.++ .+.|.++|||++.. +|
T Consensus 2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k---~~T~~~k-~~nP~Wne~f~f~v~~~-~~~L~v~V~d~~~~-~d 72 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVK---STTIAVR-GSQPSWEQDFMFEINRL-DLGLTVEVWNKGLI-WD 72 (128)
T ss_dssp EEEEEEEEEEECSSCGG---GCEEEEEEEETTEE---EECCCEE-SSSCEEEEEEEEEECCC-SSEEEEEEEECCSS-CE
T ss_pred eEEEEEEEEEECCCCCC---CcCeEEEEEeCCEE---EEEEEec-CCCCeEEEEEEEeeccc-cceEEEEEEeCCCc-CC
Confidence 68999999999999976 57999999998765 4777775 55999999999999776 57899999999865 69
Q ss_pred cccEEEEEECccCCCC--CeeEEEEeccc
Q 038990 342 DKLGMQVVPLRSLTPN--ETKELTLDLVK 368 (505)
Q Consensus 342 ~~lG~~~i~l~~l~~~--~~~~~~l~l~~ 368 (505)
++||++.|+|+++..+ .....|++|..
T Consensus 73 ~~lG~~~I~L~~l~~~~~~~~~~W~~L~~ 101 (128)
T d2cjta1 73 TMVGTVWIPLRTIRQSNEEGPGEWLTLDS 101 (128)
T ss_dssp EEEEEEEEEGGGSCBCSSCCCCEEEECBC
T ss_pred cceEEEEEEehhhccCCCCCCCeeEECCc
Confidence 9999999999998744 33456887754
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.62 E-value=6e-16 Score=131.46 Aligned_cols=99 Identities=33% Similarity=0.513 Sum_probs=84.6
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v 332 (505)
+....|.|.|+|++|+||+.++..+.+||||++++.+. ...+++|++++++.||.|||+|.|.+... ....|.+.+
T Consensus 10 Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v 89 (137)
T d2cm5a1 10 YSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISV 89 (137)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred EECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEe
Confidence 44567899999999999999998899999999998542 34456899999999999999999998643 356899999
Q ss_pred EEcCCCCCCcccEEEEEECccCC
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLT 355 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~ 355 (505)
||++..+++++||++.+++..+.
T Consensus 90 ~~~~~~~~~~~iG~~~i~l~~~~ 112 (137)
T d2cm5a1 90 WDYDIGKSNDYIGGCQLGISAKG 112 (137)
T ss_dssp EECCSSSCCEEEEEEEEETTCCH
T ss_pred eeCCCCCCCCEEEEEEeCccccC
Confidence 99999999999999999997653
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.61 E-value=7e-16 Score=132.00 Aligned_cols=100 Identities=20% Similarity=0.289 Sum_probs=85.0
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEE---cCeEEEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccCCccC
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVIC---RGEQKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRRGLRL 460 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~---~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~ 460 (505)
..|+|++|+||+.. +.+||||++++ +...++|++++++.||+|||.|.|.+..... ...|.|+|||++. +
T Consensus 36 L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~---~ 112 (143)
T d1rsya_ 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR---F 112 (143)
T ss_dssp EEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS---S
T ss_pred EEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCC---C
Confidence 48999999999764 57899999999 3445799999999999999999999864322 3479999999974 6
Q ss_pred CCCCccEEEEEeccccccCCEEeEEEEeCC
Q 038990 461 RSKESLGYVDINLHDVLHNGRLKEKYHLIN 490 (505)
Q Consensus 461 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 490 (505)
+++.+||++.++|+++..+....+||+|+.
T Consensus 113 ~~~~~iG~~~i~L~~~~~~~~~~~W~~L~s 142 (143)
T d1rsya_ 113 SKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp SCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred CCCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence 788999999999999987777789999975
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1.9e-15 Score=128.34 Aligned_cols=102 Identities=14% Similarity=0.111 Sum_probs=87.4
Q ss_pred eEEEEEeeecCCCCCCCCCCEEEEEEcC----eEEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCCccCC
Q 038990 387 VGKATEYGAKDLEGKHHNNPYAVVICRG----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRGLRLR 461 (505)
Q Consensus 387 ~a~v~v~~a~~L~~~~~~dpyv~v~~~~----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~ 461 (505)
...|+|++|++|+..+.+||||++++.+ ..++|++++++.||+|||.|.|.+....+. ..|.|+|||++. ++
T Consensus 27 ~L~V~v~~a~~L~~~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~---~~ 103 (138)
T d1wfma_ 27 ELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR---FS 103 (138)
T ss_dssp EEEEEEEEEECCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS---SC
T ss_pred EEEEEEEEcCCCCCCCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeecc---cc
Confidence 3589999999998888999999999953 235899999999999999999999765433 479999999884 78
Q ss_pred CCCccEEEEEeccccccCCEEeEEEEeCCC
Q 038990 462 SKESLGYVDINLHDVLHNGRLKEKYHLINS 491 (505)
Q Consensus 462 ~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 491 (505)
.+++||++.|+|.++......++||+|...
T Consensus 104 ~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~ 133 (138)
T d1wfma_ 104 RHSVAGELRLGLDGTSVPLGAAQWGELKTS 133 (138)
T ss_dssp TTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred cceeeeEEEEEhHHccCCCCceEeEeCCCC
Confidence 899999999999998766666899999865
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.59 E-value=4.9e-15 Score=124.61 Aligned_cols=109 Identities=17% Similarity=0.297 Sum_probs=86.1
Q ss_pred EEEEEeeecCCCC-----CCCCCCEEEEEEcC-----eEEEeecccCC-CCCccCceEEEEeeCCCCCCeEEEEEEEccC
Q 038990 388 GKATEYGAKDLEG-----KHHNNPYAVVICRG-----EQKKTKMIKKC-RDPIWNEEFQFDFEEAPLKEKIHIEVKSKRR 456 (505)
Q Consensus 388 a~v~v~~a~~L~~-----~~~~dpyv~v~~~~-----~~~kT~v~~~t-~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~ 456 (505)
.+|+|++|++|+. .+.+||||++++.+ .+++|++++++ .||.|||+|+|.+..+. ...|.|+|||++.
T Consensus 6 l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~-~~~L~~~V~D~d~ 84 (131)
T d1qasa2 6 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPD-LALVRFMVEDYDS 84 (131)
T ss_dssp EEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGG-GCEEEEEEEECCT
T ss_pred EEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcch-hceEEEEEEEecC
Confidence 3789999999963 24789999999943 45689988765 69999999999987653 3579999999984
Q ss_pred CccCCCCCccEEEEEeccccccCCEEeEEEEeCCCC-----CceEEEEEEEE
Q 038990 457 GLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSK-----NGAVQVEIKWK 503 (505)
Q Consensus 457 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~~~ 503 (505)
.+.+++||++.++|+++..+ .+|++|.+.. .+.|.++++++
T Consensus 85 ---~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g~~~~~~~L~v~i~~~ 130 (131)
T d1qasa2 85 ---SSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPSATLFVKISIQ 130 (131)
T ss_dssp ---TTCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred ---CCCCcEEEEEEEEEeccCCC---CEEEECCCCCcCCCCCCEEEEEEEEE
Confidence 67789999999999988653 4789997653 35667777765
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.57 E-value=8.9e-15 Score=121.19 Aligned_cols=104 Identities=16% Similarity=0.255 Sum_probs=84.4
Q ss_pred EEEEeeecCCCC-CCCCCCEEEEEEcCe-----EEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCC
Q 038990 389 KATEYGAKDLEG-KHHNNPYAVVICRGE-----QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRS 462 (505)
Q Consensus 389 ~v~v~~a~~L~~-~~~~dpyv~v~~~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~ 462 (505)
.+.++++..++. .+.+||||++++++. .++|+++++|+||+|||+|+|.+.+. +.+.|.|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~~---~~l~i~V~d~d------- 77 (123)
T d1bdya_ 8 SFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEG---RVIQIVLMRAA------- 77 (123)
T ss_dssp EEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCTT---CEEEEEEEEET-------
T ss_pred EEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEccc---cEEEEEEEEcc-------
Confidence 344555566554 358999999999553 34799999999999999999999764 58999999975
Q ss_pred CCccEEEEEecccccc-----CCEEeEEEEeCCCCCceEEEEEEEEe
Q 038990 463 KESLGYVDINLHDVLH-----NGRLKEKYHLINSKNGAVQVEIKWKA 504 (505)
Q Consensus 463 d~~lG~~~i~L~~l~~-----~~~~~~~~~L~~~~~G~i~l~~~~~~ 504 (505)
++++|.+.+++.++.. +...+.|++|. ++|+|+++++|-+
T Consensus 78 d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~--~~Gkl~l~v~~f~ 122 (123)
T d1bdya_ 78 EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ--PQAKVLMCVQYFL 122 (123)
T ss_dssp TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--SSCEEEEEEEEEE
T ss_pred ccccCccEEehhheeeccccCCCcccEEEeCC--CCEEEEEEEEEec
Confidence 5799999999998865 34678999996 5899999999964
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.56 E-value=2.5e-15 Score=126.25 Aligned_cols=102 Identities=25% Similarity=0.291 Sum_probs=81.6
Q ss_pred eEEEEEeeecCCCCC---CCCCCEEEEEEc---CeEEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCCcc
Q 038990 387 VGKATEYGAKDLEGK---HHNNPYAVVICR---GEQKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRGLR 459 (505)
Q Consensus 387 ~a~v~v~~a~~L~~~---~~~dpyv~v~~~---~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~ 459 (505)
...|+|++|+||+.. +.+||||++++. .++++|++++++.||+|||+|.|.+...... ..|.|+|||++.
T Consensus 19 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~--- 95 (130)
T d1dqva1 19 QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDR--- 95 (130)
T ss_dssp EEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCS---
T ss_pred EEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcCC---
Confidence 358999999999763 578999999994 3457999999999999999999998765333 479999999984
Q ss_pred CCCCCccEEEEEeccccc-cCC-EEeEEEEeCCC
Q 038990 460 LRSKESLGYVDINLHDVL-HNG-RLKEKYHLINS 491 (505)
Q Consensus 460 ~~~d~~lG~~~i~L~~l~-~~~-~~~~~~~L~~~ 491 (505)
++++++||++.|++.... +.. ....||+|.++
T Consensus 96 ~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~~ 129 (130)
T d1dqva1 96 FSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG 129 (130)
T ss_dssp SSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCC
T ss_pred CCCCceEEEEEECchhhhhcCCCCCcEEEecccC
Confidence 778999999999865433 322 34569999875
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.53 E-value=1.3e-15 Score=130.28 Aligned_cols=101 Identities=22% Similarity=0.303 Sum_probs=83.1
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcCe--------------EEEeecccCCCCCccCceEEEEeeCC--CCCCeEE
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRGE--------------QKKTKMIKKCRDPIWNEEFQFDFEEA--PLKEKIH 448 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~~--------------~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~~l~ 448 (505)
..|.|++|+||+.. +.+||||++++... +++|++++++.||.|||.|.|.+... .....|.
T Consensus 20 L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~L~ 99 (142)
T d1rh8a_ 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLE 99 (142)
T ss_dssp EEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEE
T ss_pred EEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCCEEE
Confidence 47999999999764 57999999998421 24799999999999999999974322 1234799
Q ss_pred EEEEEccCCccCCCCCccEEEEEeccccccCCEEeEEEEeCCC
Q 038990 449 IEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINS 491 (505)
Q Consensus 449 i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 491 (505)
|+|||++. ++++++||++.++|+++..+....+||+|.+.
T Consensus 100 i~V~d~d~---~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~ 139 (142)
T d1rh8a_ 100 VTVWDYDR---FSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139 (142)
T ss_dssp EEEEEECS---SSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred EEEEEecC---CCCCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence 99999984 67889999999999999887777899999865
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.2e-14 Score=121.17 Aligned_cols=100 Identities=28% Similarity=0.442 Sum_probs=76.3
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEc-----CeEEEeecccCCCCCccCceEEEE-eeCCCC-CCeEEEEEEEccCC
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICR-----GEQKKTKMIKKCRDPIWNEEFQFD-FEEAPL-KEKIHIEVKSKRRG 457 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~-----~~~~kT~v~~~t~nP~wne~f~f~-v~~~~~-~~~l~i~V~d~~~~ 457 (505)
..|+|++|+||+.. +.+||||++++. ..+++|++++++.||.|||+|.|. +..... ...|.|+|||++..
T Consensus 16 L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~~~~ 95 (125)
T d2bwqa1 16 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARV 95 (125)
T ss_dssp EEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC---
T ss_pred EEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEECCCC
Confidence 48999999999753 588999999983 234699999999999999999997 443322 24799999998741
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEeC
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHLI 489 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 489 (505)
...++++||++.++|+++..... .+||+|+
T Consensus 96 -~~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L~ 125 (125)
T d2bwqa1 96 -REEESEFLGEILIELETALLDDE-PHWYKLQ 125 (125)
T ss_dssp -----CEEEEEEEEEGGGCCCSSC-EEEEECC
T ss_pred -CCCCCeeEEEEEEEchhcCCCCC-CEEEeCc
Confidence 12345699999999999886554 6899984
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.52 E-value=4.6e-15 Score=125.89 Aligned_cols=110 Identities=21% Similarity=0.358 Sum_probs=86.2
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~ 458 (505)
..|+|++|+||+.. +.+||||++++.. .+++|++++++.||+|||.|.|.+...... ..|.|+||+++.
T Consensus 17 L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~~-- 94 (137)
T d2cm5a1 17 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDI-- 94 (137)
T ss_dssp EEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS--
T ss_pred EEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeeeCCC--
Confidence 48999999999753 5899999999832 346999999999999999999999755333 479999999874
Q ss_pred cCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEEEeC
Q 038990 459 RLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWKAI 505 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~~~~ 505 (505)
++++++||++.+++.++.. ...+||+|.+.+...+. +|+++
T Consensus 95 -~~~~~~iG~~~i~l~~~~~--~~~~W~~l~~~~~~~v~---~Wh~L 135 (137)
T d2cm5a1 95 -GKSNDYIGGCQLGISAKGE--RLKHWYECLKNKDKKIE---RWHQL 135 (137)
T ss_dssp -SSCCEEEEEEEEETTCCHH--HHHHHHHHHHCTTCCEE---EEEEC
T ss_pred -CCCCCEEEEEEeCccccCc--chhhhhhHhhCCCCeee---Eceec
Confidence 7789999999999987543 23578877766555543 56653
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.51 E-value=1.5e-15 Score=130.28 Aligned_cols=110 Identities=34% Similarity=0.522 Sum_probs=89.3
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeec--CCCCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKD--PETQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~--~~~~~L~v~v 332 (505)
+....|.|.|+|++|+||+..+..+.+||||++++.+.. ..+++|++++++.||.|||+|.|.+.. .....|.|.|
T Consensus 15 Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v 94 (145)
T d1dqva2 15 YLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAV 94 (145)
T ss_dssp EETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEE
T ss_pred EcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEE
Confidence 455678999999999999999988999999999986542 234689999999999999999998753 2356799999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCCeeEEEEecc
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLV 367 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~ 367 (505)
||++..+++++||++.+++..+... ....|.++.
T Consensus 95 ~d~~~~~~~~~iG~~~i~l~~~~~~-~~~~W~~l~ 128 (145)
T d1dqva2 95 VDYDCIGHNEVIGVCRVGPEAADPH-GREHWAEML 128 (145)
T ss_dssp EECCSSSCCEEEEECCCSSCTTCHH-HHHHHHTSS
T ss_pred EecCCCCCCcEEEEEEECchHcCch-hhHHHHHHH
Confidence 9999999999999999999876432 233455543
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.49 E-value=6.3e-14 Score=118.84 Aligned_cols=86 Identities=23% Similarity=0.278 Sum_probs=70.4
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEc--C---eEEEeecccCCCCCccCceEEEEeeCCCCCC-eEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICR--G---EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKE-KIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~--~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~-~l~i~V~d~~~~~ 458 (505)
..|+|++|+||+.. +.+||||++++. + .+++|++++++.||.|||+|.|.+....... .|.|+|||++.
T Consensus 17 L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~~-- 94 (138)
T d1w15a_ 17 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSER-- 94 (138)
T ss_dssp EEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCT--
T ss_pred EEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeCCC--
Confidence 47999999999763 578999999982 2 2358999999999999999999987654443 69999999984
Q ss_pred cCCCCCccEEEEEecccc
Q 038990 459 RLRSKESLGYVDINLHDV 476 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l 476 (505)
++++++||++.++++..
T Consensus 95 -~~~~~~iG~~~i~l~~~ 111 (138)
T d1w15a_ 95 -GSRNEVIGRLVLGATAE 111 (138)
T ss_dssp -TSCCEEEEEEEESTTCC
T ss_pred -CCCCCEEEEEEEcchhC
Confidence 77899999999999763
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1.3e-13 Score=116.79 Aligned_cols=102 Identities=21% Similarity=0.325 Sum_probs=79.7
Q ss_pred eEEEEEeeecCCCCC----CCCCCEEEEEEc---CeEEEeecccCCCCCccCceEEEE-eeCCCC-CCeEEEEEEEccCC
Q 038990 387 VGKATEYGAKDLEGK----HHNNPYAVVICR---GEQKKTKMIKKCRDPIWNEEFQFD-FEEAPL-KEKIHIEVKSKRRG 457 (505)
Q Consensus 387 ~a~v~v~~a~~L~~~----~~~dpyv~v~~~---~~~~kT~v~~~t~nP~wne~f~f~-v~~~~~-~~~l~i~V~d~~~~ 457 (505)
...|+|++|+||+.. +.+||||++++. ...++|++++++.||.|||+|.|. +..... ...|.|+|||++.
T Consensus 23 ~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~- 101 (138)
T d1ugka_ 23 AFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDR- 101 (138)
T ss_dssp EEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECS-
T ss_pred EEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECCC-
Confidence 358999999999763 247999999993 445799999999999999999997 433222 2379999999874
Q ss_pred ccCCCCCccEEEEEeccccccC-CEEeEEEEeCCC
Q 038990 458 LRLRSKESLGYVDINLHDVLHN-GRLKEKYHLINS 491 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~-~~~~~~~~L~~~ 491 (505)
++++++||++.++|+++... .....|+.+..+
T Consensus 102 --~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~~~ 134 (138)
T d1ugka_ 102 --FSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134 (138)
T ss_dssp --SCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred --CCCCcEEEEEEEEcccccCCCCeEEEEeeccCC
Confidence 77899999999999998543 345566666543
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.44 E-value=1.6e-13 Score=118.88 Aligned_cols=101 Identities=19% Similarity=0.290 Sum_probs=81.7
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~ 458 (505)
..|.|++|+||+.. +.+||||++++.. ..++|++++++.||+|||+|.|.+...... ..|.|+||+++.
T Consensus 27 L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~~-- 104 (157)
T d1uowa_ 27 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK-- 104 (157)
T ss_dssp EEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS--
T ss_pred EEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcccCC--
Confidence 47999999999753 5899999999843 235899999999999999999999766443 379999999984
Q ss_pred cCCCCCccEEEEEecccc----------cc--CCEEeEEEEeCCC
Q 038990 459 RLRSKESLGYVDINLHDV----------LH--NGRLKEKYHLINS 491 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l----------~~--~~~~~~~~~L~~~ 491 (505)
++++++||++.|++... +. +..+.+||+|...
T Consensus 105 -~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~~ 148 (157)
T d1uowa_ 105 -IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 148 (157)
T ss_dssp -SSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred -CCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCCC
Confidence 78899999999999653 33 2356789999753
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.40 E-value=3.9e-13 Score=111.07 Aligned_cols=97 Identities=22% Similarity=0.285 Sum_probs=75.6
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECCeec--ceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCC
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERI--PAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGT 340 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~ 340 (505)
.+.|.++.+..++. ..+.+||||++++.+... ..++|+++++|+||+|||+|+|.+.+ .+.|.+.|||+|
T Consensus 6 ~~~~~~~~~~~~~~--~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~--~~~l~i~V~d~d---- 77 (123)
T d1bdya_ 6 RISFNSYELGSLQA--EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA---- 77 (123)
T ss_dssp EEEEEEEECCTTCC--CCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT--TCEEEEEEEEET----
T ss_pred EEEEEEeecccCCC--CCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc--ccEEEEEEEEcc----
Confidence 44555555555544 358899999999976421 23578999999999999999999965 468999999986
Q ss_pred CcccEEEEEECccCC-----CCCeeEEEEecc
Q 038990 341 HDKLGMQVVPLRSLT-----PNETKELTLDLV 367 (505)
Q Consensus 341 d~~lG~~~i~l~~l~-----~~~~~~~~l~l~ 367 (505)
++++|.+.+++.++. .+...+.|++|.
T Consensus 78 d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~ 109 (123)
T d1bdya_ 78 EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ 109 (123)
T ss_dssp TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB
T ss_pred ccccCccEEehhheeeccccCCCcccEEEeCC
Confidence 689999999998774 456778899874
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1.3e-12 Score=107.59 Aligned_cols=87 Identities=26% Similarity=0.476 Sum_probs=66.4
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECC---eecceeee--eeeCCCCCCeEcee-EEE-EeecCCCCEEEEEEEEc
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSG---ERIPAKKT--SVKMKTLNPEWNED-FKL-TVKDPETQVLQLHVYDW 335 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~---~~~~~~~T--~~~~~t~nP~wne~-f~~-~v~~~~~~~L~v~v~d~ 335 (505)
.|+|+|++|++|+.+ +.||||++++-+ +...+.+| .+.+++.||.|||+ |.+ .+..++...|.|.|||+
T Consensus 2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~ 77 (122)
T d2zkmx2 2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE 77 (122)
T ss_dssp EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence 689999999999865 479999999843 11122233 33578899999975 444 35555566899999998
Q ss_pred CCCCCCcccEEEEEECccCCCC
Q 038990 336 EKVGTHDKLGMQVVPLRSLTPN 357 (505)
Q Consensus 336 d~~~~d~~lG~~~i~l~~l~~~ 357 (505)
| |++||++.+|++.+..+
T Consensus 78 d----~~~lG~~~ipl~~l~~G 95 (122)
T d2zkmx2 78 G----NKFLGHRIIPINALNSG 95 (122)
T ss_dssp T----TEEEEEEEEEGGGBCCE
T ss_pred C----CCEEEEEEEEcccCcCC
Confidence 5 78999999999999876
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.33 E-value=1.4e-14 Score=124.12 Aligned_cols=104 Identities=18% Similarity=0.268 Sum_probs=81.1
Q ss_pred eEEEEEeeecCCCCC---CCCCCEEEEEEcCe-----EEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCC
Q 038990 387 VGKATEYGAKDLEGK---HHNNPYAVVICRGE-----QKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRG 457 (505)
Q Consensus 387 ~a~v~v~~a~~L~~~---~~~dpyv~v~~~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~ 457 (505)
...|+|++|+||+.. +.+||||++++.+. +++|++++++.||.|||.|.|.+...... ..|.|+|+|++.
T Consensus 21 ~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~~- 99 (145)
T d1dqva2 21 LLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDC- 99 (145)
T ss_dssp EEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCS-
T ss_pred EEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEecCC-
Confidence 358999999999753 57899999998643 46899999999999999999988654322 379999999874
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCc
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNG 494 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G 494 (505)
++++++||++.|+++.+...+ ..+||+|..++..
T Consensus 100 --~~~~~~iG~~~i~l~~~~~~~-~~~W~~l~~~p~~ 133 (145)
T d1dqva2 100 --IGHNEVIGVCRVGPEAADPHG-REHWAEMLANPRK 133 (145)
T ss_dssp --SSCCEEEEECCCSSCTTCHHH-HHHHHTSSSSSSS
T ss_pred --CCCCcEEEEEEECchHcCchh-hHHHHHHHhCCCC
Confidence 778899999999998764322 3567777655443
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=7.9e-11 Score=96.74 Aligned_cols=96 Identities=20% Similarity=0.284 Sum_probs=70.3
Q ss_pred EEEEeeecCCCCCCCCCCEEEEEEcC------eEEEeec--ccCCCCCccCce-EEEE-eeCCCCCCeEEEEEEEccCCc
Q 038990 389 KATEYGAKDLEGKHHNNPYAVVICRG------EQKKTKM--IKKCRDPIWNEE-FQFD-FEEAPLKEKIHIEVKSKRRGL 458 (505)
Q Consensus 389 ~v~v~~a~~L~~~~~~dpyv~v~~~~------~~~kT~v--~~~t~nP~wne~-f~f~-v~~~~~~~~l~i~V~d~~~~~ 458 (505)
+|+|++|++|+.. ..||||++++.+ .+++|++ ..++.||+|||. |.|. +..++ ...|.|.|||++
T Consensus 4 ~V~Visaq~L~~~-~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~-l~~L~f~V~D~d--- 78 (122)
T d2zkmx2 4 SITVISGQFLSER-SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPE-LASLRVAVMEEG--- 78 (122)
T ss_dssp EEEEEEEESCCSS-CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGG-GCEEEEEEEETT---
T ss_pred EEEEEEeeCCCCC-CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCc-ccEEEEEEECCC---
Confidence 6899999999864 689999999843 2334444 356899999975 4443 44432 247999999975
Q ss_pred cCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceE
Q 038990 459 RLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAV 496 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i 496 (505)
+++||++.++|+.+..+ .++.+|.+..+..+
T Consensus 79 ----~~~lG~~~ipl~~l~~G---yR~vpL~~~~g~~l 109 (122)
T d2zkmx2 79 ----NKFLGHRIIPINALNSG---YHHLCLHSESNMPL 109 (122)
T ss_dssp ----TEEEEEEEEEGGGBCCE---EEEEEEECTTCCEE
T ss_pred ----CCEEEEEEEEcccCcCC---ceEEEccCCCcCCC
Confidence 58999999999988655 47788887644333
|