Citrus Sinensis ID: 038992

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
Protein Sequence
MAAHRHREREREMESKIEAATGKLVVKKVGGKSTVTRCFSKYPLKFIIPNKVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQILEKQIFRVVLDSSLVIVDWITSGRHESGEKWDFELYRSTNHIFLEGDQPLFLDSVLLEQGNITNIAERMQDYQVIAMVILLGPKLKQIQIQVQENVRRMMSEQLYLPSTGLRPHGKTQSDHFLAKPSFVVSCSAFGPKGIGIVVRIAAMTTESVYRFLQHQLAGMETLLGVSPYS
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEEEEEEccEEEEEEEEEEccEEEEccccccccccccEEEEEEEcccccccccEEEEEEEEccccEEEEEccccccccccccccccEEEEEEEEEEEEccccEEEEEEEEcccccccccccccEEEEEEEEEEEccEEEEEEccEEcccccccHHcccccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEEcccccEEEEEEccccHHHHHHHHHHHHHHcHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccHHcccccccccccccccEEEEEEEccccEEEEEEEEcccEEEEccccccccccccEEEEEEEccccEEcccEEEEEEEEccccEEEEEEccccEEEEccccccHEEEEEEEEEEEccccEEEEEEEEcccccccccEEEEEEEEEEEEEEEccccEEEEccEEccccccccHHHHcccccEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEccccccccEEEEEEEcccHHHHHHHHHHHHHcHHHHHcccccc
Coil and Loop (DISEMBL)
MAAHRHREREREMESKIEAATGKLVVkkvggkstvtrcfskyplkfiipnkvgssetDAVWVYTLTygggivsgdsiSCEITVADACTAVLTTQASTKVYKSLGSKSSEQILEKQIFRVVLDSSLVIVDWItsgrhesgekwDFELYRSTnhiflegdqplfLDSVLLEQGNITNIAERMQDYQVIAMVILLGPKLKQIQIQVQENVRRMMSEQlylpstglrphgktqsdhflakpsfvvscsafgpkgIGIVVRIAAMTTESVYRFLQHQLAGMEtllgvspys
Flexible Loop (DISEMBL)
maahrhrereremeskieaatgklvvkkvggkstvtrcfskyplkfiipnkvgssetDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQILEKQIFRVVLDSSLVIVDWitsgrhesgekWDFELYRSTNHIFLEGDQPLFLDSVLLEQGNITNIAERMQDYQVIAMVILLGPKLKQIQIQVQENVRRMMSEQLYLPSTGLRPHGKTQSDHFLAKPSFVVSCSAFGPKGIGIVVRIAAMTTESVYRFLQHQLAGmetllgvspys
Low Complexity Region (SEG)
maahrhrereremeSKIEAAtgklvvkkvggkstvtRCFSKYPLKFIIPNKVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQILEKQIFRVVLDSSLVIVDWITSGRHESGEKWDFELYRSTNHIFLEGDQPLFLDSVLLEQGNITNIAERMQDYQVIAMVILLGPKLKQIQIQVQENVRRMMSEQLYLPSTGLRPHGKTQSDHFLAKPSFVVSCSAFGPKGIGIVVRIAAMTTESVYRFLQHQLAGMETLLGVSPYS
Disordered region (IsUnstruct)
*********************GKLVVKKVGGKSTVTRCFSKYPLKFIIPNKVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLG****EQILEKQIFRVVLDSSLVIVDWITSGRHESGEKWDFELYRSTNHIFLEGDQPLFLDSVLLEQGNITNIAERMQDYQVIAMVILLGPKLKQIQIQVQENVRRMMSEQLYL*************DHFLAKPSFVVSCSAFGPKGIGIVVRIAAMTTESVYRFLQHQLAGMETLLG*****
Disordered Region (DISOPRED)
************************VVKKVGGKSTVTRCFSKYPLKFIIPNKVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQILEKQIFRVVLDSSLVIVDWITSGRHESGEKWDFELYRSTNHIFLEGDQPLFLDSVLLEQGNI*N*AERMQDYQVIAMVILLGPKLKQIQIQVQENVRRMMSEQLYLPSTGLRPHGKTQSDHFLAKPSFVVSCSAFGPKGIGIVVRIAAMTTESVYRFLQHQLAGMETLLGVSPY*
Disordered Region (DISEMBL)
**************SKIEAATGKLVVKKVGGKSTVTRCFSKYPLKFIIPNKVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQILEKQIFRVVLDSSLVIVDWITSGRHESGEKWDFELYRSTNHIFLEGDQPLFLDSVLLEQGNITNIAERMQDYQVIAMVILLGPKLKQIQIQVQENVRRMMSEQLYLPSTGLRPHGKTQSDHFLAKPSFVVSCSAFGPKGIGIVVRIAAMTTESVYRFLQHQLAGMETLLGVSPYS
Disordered Region (DISPRO)
*******************ATGKLVVKKVGGKSTVTRCFSKYPLKFIIPNKVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQILEKQIFRVVLDSSLVIVDWITSGRHESGEKWDFELYRSTNHIFLEGDQPLFLDSVLLEQGNITNIAERMQDYQVIAMVILLGPKLKQIQIQVQENVRRMMSEQLYLPSTGLRP****QSDHFLAKPSFVVSCSAFGPKGIGIVVRIAAMTTESVYRFLQHQLAGMETLLGVSPYS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAHRHREREREMESKIEAATGKLVVKKVGGKSTVTRCFSKYPLKFIIPNKVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQILEKQIFRVVLDSSLVIVDWITSGRHESGEKWDFELYRSTNHIFLEGDQPLFLDSVLLEQGNITNIAERMQDYQVIAMVILLGPKLKQIQIQVQENVRRMMSEQLYLPSTGLRPHGKTQSDHFLAKPSFVVSCSAFGPKGIGIVVRIAAMTTESVYRFLQHQLAGMETLLGVSPYS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	286	2.2.26 [Sep-21-2011]
A9GP79	312	Urease accessory protein	yes	no	0.863	0.791	0.281	8e-26
A7HHM9	297	Urease accessory protein	yes	no	0.853	0.821	0.244	3e-25
P87125	290	Uncharacterized urease ac	yes	no	0.615	0.606	0.287	3e-15
Q4A0J9	280	Urease accessory protein	yes	no	0.720	0.735	0.223	7e-08
A1R1C9	290	Urease accessory protein	yes	no	0.580	0.572	0.246	2e-07
Q45347	257	Urease accessory protein	N/A	no	0.601	0.669	0.205	4e-07
Q11VN0	285	Urease accessory protein	yes	no	0.416	0.417	0.26	8e-07
Q8XXS7	295	Urease accessory protein	yes	no	0.587	0.569	0.256	1e-06
Q5HLV7	278	Urease accessory protein	yes	no	0.597	0.615	0.207	1e-05
Q02944	270	Urease accessory protein	yes	no	0.541	0.574	0.233	1e-05

>sp|A9GP79|URED_SORC5 Urease accessory protein UreD OS=Sorangium cellulosum (strain So ce56) GN=ureD PE=3 SV=2

 Score =  117 bits (293), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 138/306 (45%), Gaps = 59/306 (19%)

Query: 7   REREREMESKIEAATGKLVVKKVGGKSTVTRCFSKYPLKFIIPNKVGSSETDAVWVYTLT 66
           RE         +A +G+LV  +V G++ + +  ++ PLK + P   G     A WV+  +
Sbjct: 37  REPPPPARRAGKAGSGELVFTRVAGRTVLEKALARSPLKLLAPKNHGQ----AAWVFVAS 92

Query: 67  YGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQILEKQI---------- 116
           +GGG+V GD ++    V     A+L+TQASTKVY+S     S Q LE ++          
Sbjct: 93  FGGGLVGGDELNLHARVGRGAAALLSTQASTKVYRS--PLVSRQRLEAEVQAGGLLVAIP 150

Query: 117 --------------FRVVL--DSSLVIVDWITSGRHESGEKWDFELYRSTNHIFLEGDQP 160
                           V L  D+SLV+VD ++SGR   GE+W F+ Y S   +   G + 
Sbjct: 151 DPVVCFAGSRYEQDIDVALADDASLVLVDALSSGRSARGERWAFDRYASRVRVS-RGGRA 209

Query: 161 LFLDSVLLEQGNITNIAERMQDYQVIAMVILLGPKLKQIQIQVQENVRRMMSEQLYLPST 220
           + LD+  L+  +   + ERM  +  +A ++ LGP+       +                 
Sbjct: 210 VLLDATRLDPAH-GALPERMGRFDALATLVALGPRAASAAEALLAP-------------- 254

Query: 221 GLRPHGKTQSDHFLAKPSFVVSCSAFGPKGIGIVVRIAAMTTESVYRFLQHQLAGMETLL 280
             RP  + +++        V S S    +G G VVR+A  + E V  FL+  LA +   L
Sbjct: 255 --RPPPERRAE-------LVASASPL--RGGGAVVRVAGTSVERVAGFLRGALAFLAGEL 303

Query: 281 GVSPYS 286
           G  P++
Sbjct: 304 GDDPFA 309

Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
Sorangium cellulosum (strain So ce56) (taxid: 448385)

>sp|A7HHM9|URED_ANADF Urease accessory protein UreD OS=Anaeromyxobacter sp. (strain Fw109-5) GN=ureD PE=3 SV=1

 Score =  115 bits (289), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 141/298 (47%), Gaps = 54/298 (18%)

Query: 14  ESKIEAATGKLVVKKVGGKSTVTRCFSKYPLKFIIPNKVGSSETDAVWVYTLTYGGGIVS 73
           E  + A  G++ + +V G S +  C +  PL+ + P+  G       W+ + ++GGG+++
Sbjct: 26  EVGLRAGAGRVDIARVDGASAIVACVASSPLQLLAPSPRGRC----AWIISASHGGGLLA 81

Query: 74  GDSISCEITVADACTAVLTTQASTKVYKSLGSKSSE------------------------ 109
           GD +S E+ V     A+L+TQA TK+Y+S G  +S+                        
Sbjct: 82  GDEVSLEVDVGAGAVALLSTQAGTKIYRSRGEVASQGLSARVGAGALLAALPHPVSCFSG 141

Query: 110 -QILEKQIFRVVLDSSLVIVDWITSGRHESGEKWDFELYRSTNHIFLEGDQPLFLDSVLL 168
            +  ++Q F +   +SL+ +D + +GR   GE+W F+ YRS   + ++G + +  D++ L
Sbjct: 142 ARFRQEQRFELARGASLLWLDALVAGRIARGERWAFDEYRSRIEVAIDG-RTVLADALRL 200

Query: 169 EQGNITNIAERMQDYQVIAMVILLGPKLKQIQIQVQENVRRMMSEQLYLPSTGLRPHGKT 228
             G    I  R+   +++A V+ LGP +     ++ E V    +E+      G+      
Sbjct: 201 VPGEGPPIVARLPGVELLATVVALGPAVASAARELLERVAASPAER----DAGV------ 250

Query: 229 QSDHFLAKPSFVVSCSAFGPKGIGIVVRIAAMTTESVYRFLQHQLAGMETLLGVSPYS 286
                          +A  P   G+++R+A+ + E+   FL+ +LA +E + G  P++
Sbjct: 251 --------------LAAASPLRDGLLLRVASRSVEAGLAFLRQRLAFVEAVTGADPFA 294

Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.

Anaeromyxobacter sp. (strain Fw109-5) (taxid: 404589)

>sp|P87125|URED_SCHPO Uncharacterized urease accessory protein ureD-like OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3A12.09c PE=3 SV=1

 Score = 82.4 bits (202), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 98/216 (45%), Gaps = 40/216 (18%)

Query: 17  IEAATGKLVVKKVGGKSTVTRCFSKYPLKFIIPNKVGSSETDAVWVYTLTYGGGIVSGDS 76
           +E   G+  V+ +     VT  F KYPLK I P     ++ D   +Y ++YGGG+VSGD 
Sbjct: 1   MEDKEGRFRVECIENVHYVTDMFCKYPLKLIAP----KTKLDFSILYIMSYGGGLVSGDR 56

Query: 77  ISCEITVADACTAVLTTQASTKVYKSL-GSKSSEQILEKQIFRVVL-------------- 121
           ++ +I V    T  + +Q +TK+YK + G  +++Q L+ ++    L              
Sbjct: 57  VALDIIVGKNATLCIQSQGNTKLYKQIPGKPATQQKLDVEVGTNALCLLLQDPVQPFGDS 116

Query: 122 -------------DSSLVIVDWITSGRHESGEKWDFELYRSTNHIFLE----GDQPLFLD 164
                         SSL ++DW   GR    E+W    Y S N I ++      +   L 
Sbjct: 117 NYIQTQNFVLEDETSSLALLDWTLHGRSHINEQWSMRSYVSKNCIQMKIPASNQRKTLLR 176

Query: 165 SVL--LEQGN--ITNIAERMQDYQVIAMVILLGPKL 196
            VL   ++ N  I   AERM  ++ I  + L+GPK 
Sbjct: 177 DVLKIFDEPNLHIGLKAERMHHFECIGNLYLIGPKF 212

Probably facilitates nickel incorporation.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q4A0J9|URED_STAS1 Urease accessory protein UreD OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=ureD PE=3 SV=1

 Score = 58.2 bits (139), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 103/246 (41%), Gaps = 40/246 (16%)

Query: 13  MESKIEAATGKL--VVKKVGGKSTVTRCFSKYPLKFIIPNKVGSSETDAVWVYTLTYGGG 70
           M +  +A TG+L   V   G KS     F +  LK + P  V  +++D    Y +  GGG
Sbjct: 1   MSNNKQAWTGQLDLSVFNNGKKSVARDVFFEKALKVMRP--VYLNQSDIPTFYIVNVGGG 58

Query: 71  IVSGDSISCEITVADACTAVLTTQASTKVYKSLGSK------------------------ 106
            + GD  +    +      +LT+Q +TK+YK+L                           
Sbjct: 59  YLDGDRYTMNFNIDSDAKVILTSQGATKIYKTLNDHVEQYQTFNIKNNGYAEYVGDPIIA 118

Query: 107 -SSEQILEKQIFRVVLDSSLVIVDWITSGRHESGEKWDFELYRSTNHIFLEGDQPLFLDS 165
             + +  +  +F +   +SL   D +T G  +S +++ +      N I+++ D  +  D+
Sbjct: 119 FENAKFYQHNVFNLESTASLFYTDILTPGYSKSDKRFSYTYMHLLNEIYVD-DALVTFDN 177

Query: 166 VLLE--QGNITNIAERMQDYQVIAMVILLGPKLKQIQI-QVQENVRRMMSEQ------LY 216
           +LL+  + N+  +   M+DY  +     + P + Q  I QV E ++    +        +
Sbjct: 178 MLLDPQKQNVDGLG-YMEDYTHLGSCYFIHPSVNQKFIEQVYEEIKHFQHKYDCRFGITH 236

Query: 217 LPSTGL 222
           LP+ G 
Sbjct: 237 LPTHGF 242

Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.

Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) (taxid: 342451)

>sp|A1R1C9|URED_ARTAT Urease accessory protein UreD OS=Arthrobacter aurescens (strain TC1) GN=ureD PE=3 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 98/199 (49%), Gaps = 33/199 (16%)

Query: 30  GGKSTVTRCFSKYPLKFIIPNKVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTA 89
           GG+S  +R F +  L+ + P+ +   E+  V    +  GG  +  D    ++TV +    
Sbjct: 26  GGRSVASRQFHEGALRVLRPHYL--DESGQVGYVMVNPGGAYLGADLFLIDVTVENNAAL 83

Query: 90  VLTTQASTKVYKSLGSKSSEQI---------LE--------------KQIFRVVLD--SS 124
           +LTTQ++TKVY++ GS + +++         LE              +Q  R+ L   SS
Sbjct: 84  LLTTQSATKVYRTPGSFAEQRMSVRLGEGSRLELMPDQLIAYREASYRQNSRISLHPTSS 143

Query: 125 LVIVDWITSGRHESGEKWDFELYRSTNHIFLE---GDQPLFLDSVLLEQ--GNITNIAER 179
           L++ + IT G    G  + ++  R  N I+++   G + L LD++L+    G++T +   
Sbjct: 144 LIMAEVITPGWSPDGASFKYQEVRLRNEIWIDDENGAKLLALDNLLIRPPLGDVTGMG-F 202

Query: 180 MQDYQVIAMVILLGPKLKQ 198
           M+ +  +  ++++ P++ Q
Sbjct: 203 MEGFSHLGSLVVVDPRVNQ 221

Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.

Arthrobacter aurescens (strain TC1) (taxid: 290340)

>sp|Q45347|URED_BACPA Urease accessory protein UreD OS=Bacillus pasteurii GN=ureD PE=3 SV=2

 Score = 55.8 bits (133), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/200 (20%), Positives = 86/200 (43%), Gaps = 28/200 (14%)

Query: 30  GGKSTVTRCFSKYPLKFIIPNKVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTA 89
           G K+ ++ C+   PL+   P  +  +      VY +   GGIV GD    +I + +    
Sbjct: 7   GNKTVLSNCYQNPPLRASRPLYINPANRSEATVYLVETSGGIVEGDHNVFDIDIKEGADV 66

Query: 90  VLTTQASTKVYKSLGSKSSEQILE--------------------------KQIFRVVLDS 123
            L  Q++TK+Y S     S Q ++                          K + ++  DS
Sbjct: 67  CLIPQSATKIYPSYNGIWSSQDMDITIGPKASLSFKTEAVIPFEQARFNSKTVIQMTSDS 126

Query: 124 SLVIVDWITSGRHESGEKWDFELYRSTNHIFLEGDQPLFLDSVLLEQGNI-TNIAERMQD 182
           + +  D ++ GR   GE +++   R+   ++++ D+ L  D +L+ + N+       ++D
Sbjct: 127 TFLWGDILSPGRVARGEVFEYTDVRTNFQVWMD-DECLIYDPLLISKDNMGLKKMGMLED 185

Query: 183 YQVIAMVILLGPKLKQIQIQ 202
           +  I  +  + P +++  I+
Sbjct: 186 HLFIGSMWFVTPTIEEFDIR 205

Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.

Bacillus pasteurii (taxid: 1474)

>sp|Q11VN0|URED_CYTH3 Urease accessory protein UreD OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=ureD PE=3 SV=1

 Score = 54.7 bits (130), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 31/150 (20%)

Query: 24  LVVKKVGGKSTVTRCFSKYPLKFIIPNKVGSSETDAVWVYTLTYGGGIVSGDSISCEITV 83
           L +  + GKS+VT      PLK     K       A  +    YGGG V GDSI   I  
Sbjct: 10  LEISTIHGKSSVTGSKIFRPLKIFALEK-----NKACHLVFSNYGGGFVEGDSIDLTIDC 64

Query: 84  ADACTAVLTTQASTKVYKSLGSKSSEQ-------------------------ILEKQIF- 117
                +  ++QA+T++Y+S   K+ +Q                         I E+ +F 
Sbjct: 65  KADTVSAFSSQANTRIYRSEHGKTCKQTITGTVGENALVVFMGDPVVPHQKSIFEQHLFW 124

Query: 118 RVVLDSSLVIVDWITSGRHESGEKWDFELY 147
           ++  ++ L+++DW  +GR  +GE++ F+ +
Sbjct: 125 KLEKNAVLLVIDWFEAGRILNGERFAFDSF 154

Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.

Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) (taxid: 269798)

>sp|Q8XXS7|URED_RALSO Urease accessory protein UreD OS=Ralstonia solanacearum (strain GMI1000) GN=ureD PE=3 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 82/203 (40%), Gaps = 35/203 (17%)

Query: 20  ATGKLVVKKVGGKSTVTRCFSKYPL---KFIIPNKVGSSETDAVWVYTLTYGGGIVSGDS 76
           A+ +L   + GG++ +  C  + PL   K + P   G        V  L    GI  GD 
Sbjct: 20  ASLRLAFARRGGRTVLASCRHRGPLRVQKALYPEGEGVCH-----VVLLHPPAGIAGGDV 74

Query: 77  ISCEITVADACTAVLTTQASTKVYKSLGSKSSEQIL--------------EKQIF---RV 119
           +   I +     AVLTT  +TK YKS G  + +Q+               E  +F   R 
Sbjct: 75  LDIGIELGAEAHAVLTTPGATKWYKSPGRTAMQQVAIRLDAGARLDWLPQENIVFNQARP 134

Query: 120 VLDSSL------VIVDWITS--GRHESGEKWDFELYRSTNHIFLEGDQPLFLDSVLLE-Q 170
           V+D +L        + W  +  GRH +GE W          +  EG QPL+++S   + Q
Sbjct: 135 VIDLTLDLAPGAAAIGWDITMLGRHAAGESWQEGRIAMHTRLRCEG-QPLWIESTAFDAQ 193

Query: 171 GNITNIAERMQDYQVIAMVILLG 193
             +      M  + V+  +  +G
Sbjct: 194 SPVLGATTGMAGFHVVGTLWAVG 216

Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

>sp|Q5HLV7|URED_STAEQ Urease accessory protein UreD OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ureD PE=3 SV=1

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/202 (20%), Positives = 84/202 (41%), Gaps = 31/202 (15%)

Query: 24  LVVKKVGGKSTVTRCFSKYPLKFIIPNKVGSSETDAVWVYTLTYGGGIVSGDSISCEITV 83
           L V   G  S     F +  LK + P  +  S     ++  +  GGG + GD     + +
Sbjct: 12  LTVFNNGESSKARNIFFEKALKVLRPIYLEQSPVPTFYIVNV--GGGYLDGDRYRVNVNL 69

Query: 84  ADACTAVLTTQASTKVYK------------SLGSKS-------------SEQILEKQIFR 118
            D     LT+Q +TK+YK            +L ++S             + +  +   F 
Sbjct: 70  EDNAQVTLTSQGATKIYKTPNDHVEQYQTFNLSNQSYMEFVADPIIAYENAKFFQHNTFN 129

Query: 119 VVLDSSLVIVDWITSGRHESGEKWDFELYRSTNHIFLEGDQPLFLDSVLL--EQGNITNI 176
           +  DS++   D +T G   +G+ + +     TN I+++ +Q +  D+++L  ++  +  I
Sbjct: 130 LKEDSAIFYTDILTPGYSSNGQDFTYNYMHLTNEIYID-NQLVVFDNMMLSPDKSRLDGI 188

Query: 177 AERMQDYQVIAMVILLGPKLKQ 198
              M++Y  +     + P + Q
Sbjct: 189 G-YMENYTHLGSAYFIHPDVNQ 209

Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.

Staphylococcus epidermidis (strain ATCC 35984 / RP62A) (taxid: 176279)

>sp|Q02944|URED_KLEPN Urease accessory protein UreD OS=Klebsiella pneumoniae GN=ureD PE=3 SV=1

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 86/197 (43%), Gaps = 42/197 (21%)

Query: 10  EREMESKIEAATGKLVVKKVG--GKSTVTRCFSKYPLKFIIPNKVGSSETDAVWVYTLTY 67
           +R ++ + + A GK V+      G  TV R F  YP            E +   +Y L  
Sbjct: 10  QRTLDLRFQQAGGKTVLASAQHVGPLTVQRPF--YP------------EEETCHLYLLHP 55

Query: 68  GGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSS-------------EQILEK 114
            GGIV GD ++    +A  C  ++T   ++K Y+S G+++              E + + 
Sbjct: 56  PGGIVGGDELTISAHLAPGCHTLITMPGASKFYRSSGAQALVRQQLTLAPQATLEWLPQD 115

Query: 115 QIF------------RVVLDSSLVIVDWITSGRHESGEKWDFELYRSTNHIFLEGDQPLF 162
            IF             +   S L+  D +  GR   GE +      +   ++++ D+PL 
Sbjct: 116 AIFFPGANARLFTTFHLCAFSRLLAWDLLCLGRPVIGETFSHGTLSNRLEVWVD-DEPLL 174

Query: 163 LDSVLLEQGNITNIAER 179
           ++ + L++G ++++AER
Sbjct: 175 VERLQLQEGELSSVAER 191

Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.

Klebsiella pneumoniae (taxid: 573)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
255585459	294	Urease accessory protein ureD, putative	0.926	0.901	0.721	1e-116
225423639	291	PREDICTED: urease accessory protein UreD	0.916	0.900	0.690	1e-111
224138560	294	predicted protein [Populus trichocarpa]	0.923	0.897	0.670	1e-111
31096385	297	putative urease accessory protein D [Sol	0.930	0.895	0.626	1e-106
222143566	304	urease accessory protein ureD [Morus alb	0.965	0.907	0.620	1e-105
356575140	302	PREDICTED: urease accessory protein ureD	0.958	0.907	0.589	1e-100
351727327	293	urease accessory protein UreD [Glycine m	0.919	0.897	0.610	1e-100
30686277	294	urease accessory protein D [Arabidopsis	0.933	0.908	0.600	3e-99
297826977	293	hypothetical protein ARALYDRAFT_482469 [	0.930	0.907	0.587	5e-96
449433497	296	PREDICTED: urease accessory protein UreD	0.923	0.891	0.618	9e-96

>gi|255585459|ref|XP_002533423.1| Urease accessory protein ureD, putative [Ricinus communis] gi|223526736|gb|EEF28966.1| Urease accessory protein ureD, putative [Ricinus communis]

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/291 (72%), Positives = 232/291 (79%), Gaps = 26/291 (8%)

Query: 21  TGKLVVKKVGGKSTVTRCFSKYPLKFIIPNKVGSSETDAVWVYTLTYGGGIVSGDSISCE 80
           TGK+ V KVGGKSTVTRCFSKYPLKFIIP KVG S+TDAVW+YTLTYGGGIVSGDSISCE
Sbjct: 3   TGKVTVDKVGGKSTVTRCFSKYPLKFIIPTKVGPSKTDAVWIYTLTYGGGIVSGDSISCE 62

Query: 81  ITVADACTAVLTTQASTKVYKSLGSKSSEQILE--------------------------K 114
             +   CTAVLTTQASTKVYKSLGSK SEQILE                          K
Sbjct: 63  FIIGHGCTAVLTTQASTKVYKSLGSKCSEQILEARIGSDSLLAVIPDPVTCFSTARYSQK 122

Query: 115 QIFRVVLDSSLVIVDWITSGRHESGEKWDFELYRSTNHIFLEGDQPLFLDSVLLEQGNIT 174
           QIFRV+ DSSLV+VDWITSGRHESGEKWDFELY+S+N+IFL+ DQPLFLD+VLLEQG+  
Sbjct: 123 QIFRVLSDSSLVVVDWITSGRHESGEKWDFELYKSSNNIFLDDDQPLFLDTVLLEQGSAG 182

Query: 175 NIAERMQDYQVIAMVILLGPKLKQIQIQVQENVRRMMSEQLYLPSTGLRPHGKTQSDHFL 234
            I ERM+DYQVIAMVILLGPKLK IQ QVQENV+R+MSEQL++P +GL  + K+ S  F 
Sbjct: 183 IIRERMRDYQVIAMVILLGPKLKHIQSQVQENVKRIMSEQLHMPFSGLSGNVKSNSSTFF 242

Query: 235 AKPSFVVSCSAFGPKGIGIVVRIAAMTTESVYRFLQHQLAGMETLLGVSPY 285
            KP F+ SCS FGPKGIGIVVRIAAMTTESVYRFLQHQLA ME L+GV PY
Sbjct: 243 TKPPFIASCSLFGPKGIGIVVRIAAMTTESVYRFLQHQLADMEPLIGVLPY 293

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423639|ref|XP_002276068.1| PREDICTED: urease accessory protein UreD [Vitis vinifera] gi|297738000|emb|CBI27201.3| unnamed protein product [Vitis vinifera]

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/291 (69%), Positives = 229/291 (78%), Gaps = 29/291 (9%)

Query: 21  TGKLVVKKVGGKSTVTRCFSKYPLKFIIPNKVGSSETDAVWVYTLTYGGGIVSGDSISCE 80
           TG + V+K+GG+STVTRCFSKYPLKFIIP KVGSS TDAVW+Y+LTYGGGIVSGDSISC 
Sbjct: 3   TGFVAVEKIGGRSTVTRCFSKYPLKFIIPRKVGSSITDAVWIYSLTYGGGIVSGDSISCG 62

Query: 81  ITVADACTAVLTTQASTKVYKSLGSKSSEQILE--------------------------K 114
            T+ D CT VLTTQASTKVYKS+GSK SEQ+LE                          K
Sbjct: 63  FTIGDGCTTVLTTQASTKVYKSVGSKCSEQVLEARIGSNALLAIIPDPVTCFSTARYSQK 122

Query: 115 QIFRVVLDSSLVIVDWITSGRHESGEKWDFELYRSTNHIFLEGDQPLFLDSVLLEQGNIT 174
           Q+FRV  DS LVIVDWITSGRH +GEKWDFELY+S+NHIFL+ DQPLFLD+VLLEQG+++
Sbjct: 123 QVFRVFSDSCLVIVDWITSGRHATGEKWDFELYKSSNHIFLD-DQPLFLDTVLLEQGSVS 181

Query: 175 NIAERMQDYQVIAMVILLGPKLKQIQIQVQENVRRMMSEQLYLPSTGLRPHGKTQSDHFL 234
           +IAERM+DYQVIAM++LLGP LK IQ QVQE+V+RMMSEQL  PST    H    SDH L
Sbjct: 182 SIAERMKDYQVIAMLVLLGPTLKHIQNQVQEDVKRMMSEQLRFPSTATGRH--RSSDHRL 239

Query: 235 AKPSFVVSCSAFGPKGIGIVVRIAAMTTESVYRFLQHQLAGMETLLGVSPY 285
            KP+F+ SCS FGPKGIG+VVRIAA TTESVY FL+HQLAGME LLGV PY
Sbjct: 240 LKPTFIASCSPFGPKGIGVVVRIAATTTESVYSFLRHQLAGMEPLLGVPPY 290

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138560|ref|XP_002326633.1| predicted protein [Populus trichocarpa] gi|222833955|gb|EEE72432.1| predicted protein [Populus trichocarpa]

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/291 (67%), Positives = 231/291 (79%), Gaps = 27/291 (9%)

Query: 21  TGKLVVKKVGGKSTVTRCFSKYPLKFIIPNKVGSSETDAVWVYTLTYGGGIVSGDSISCE 80
           TGK+VV+KVGGKSTVTRCFSKYPLKFI+P+K G  +TD+VW+Y+LTYGGGIVSGDSISCE
Sbjct: 4   TGKVVVEKVGGKSTVTRCFSKYPLKFIVPSKAGPCKTDSVWIYSLTYGGGIVSGDSISCE 63

Query: 81  ITVADACTAVLTTQASTKVYKSLGSKSSEQILE--------------------------K 114
             + D CT V TTQASTKVYKS+GS+ S Q LE                          K
Sbjct: 64  FEIGDGCTTVFTTQASTKVYKSVGSRCSAQFLEVTVGSDALLAILPDPVTCFSTARYSQK 123

Query: 115 QIFRVVLDSSLVIVDWITSGRHESGEKWDFELYRSTNHIFLEGDQPLFLDSVLLEQGNIT 174
           Q+FRV+LDS+LVIVDW TSGRHESGEKWDF+LY+STN+IFL+ +QPLFLD+VLLEQ +I+
Sbjct: 124 QVFRVLLDSNLVIVDWFTSGRHESGEKWDFDLYKSTNNIFLDDNQPLFLDTVLLEQQSIS 183

Query: 175 NIAERMQDYQVIAMVILLGPKLKQIQIQVQENVRRMMSEQLYLPSTGLRPHGKTQSDHFL 234
            I ERM+ YQVIAM+ILLGPKLK IQ +VQENV+RMMSEQL++P TGL    ++ S HF 
Sbjct: 184 PITERMRGYQVIAMIILLGPKLKHIQSEVQENVKRMMSEQLHIPFTGLSGCAQSNSRHF- 242

Query: 235 AKPSFVVSCSAFGPKGIGIVVRIAAMTTESVYRFLQHQLAGMETLLGVSPY 285
            KPSF+ SCS FGPKGIG++VR+AAMTTESVY+FLQHQL GME L+GV PY
Sbjct: 243 TKPSFIASCSVFGPKGIGVIVRVAAMTTESVYKFLQHQLVGMEPLIGVLPY 293

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|31096385|emb|CAC85464.1| putative urease accessory protein D [Solanum lycopersicum]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/292 (62%), Positives = 224/292 (76%), Gaps = 26/292 (8%)

Query: 21  TGKLVVKKVGGKSTVTRCFSKYPLKFIIPNKVGSSETDAVWVYTLTYGGGIVSGDSISCE 80
           TGK++V+KV GKST+T+CFSKYPLKFI P  V  S+TD VW+Y +TYGGGIVSGDSI C+
Sbjct: 3   TGKVIVEKVRGKSTLTKCFSKYPLKFINPKNVAPSQTDVVWIYAITYGGGIVSGDSIVCD 62

Query: 81  ITVADACTAVLTTQASTKVYKSLGSKSSEQILE--------------------------K 114
            T+ D CT VLTTQASTKVYK++G+K SEQ+LE                          K
Sbjct: 63  YTIGDGCTTVLTTQASTKVYKAVGTKISEQVLEARIGSNAFLAVIPDPVTCFSTAKYSQK 122

Query: 115 QIFRVVLDSSLVIVDWITSGRHESGEKWDFELYRSTNHIFLEGDQPLFLDSVLLEQGNIT 174
           Q+F+V+ DSSL++VDWITSGRHE+GEKW+F+LYRS N+IF   D+PLFLD+ LLEQG  +
Sbjct: 123 QVFKVMSDSSLLLVDWITSGRHETGEKWNFDLYRSMNNIFHNDDEPLFLDTALLEQGTCS 182

Query: 175 NIAERMQDYQVIAMVILLGPKLKQIQIQVQENVRRMMSEQLYLPSTGLRPHGKTQSDHFL 234
           +IAERMQDYQVIAMVILLGPKLK +Q Q+QE+V+++MS+ L++P+ G R      +DH L
Sbjct: 183 DIAERMQDYQVIAMVILLGPKLKHVQNQIQEDVKKIMSQSLHMPTIGSRQSTSRHNDHHL 242

Query: 235 AKPSFVVSCSAFGPKGIGIVVRIAAMTTESVYRFLQHQLAGMETLLGVSPYS 286
            KPSF+ SCS FGPKGIG+V RIAAMTTESVY FLQHQL+ ME LLGV PYS
Sbjct: 243 TKPSFLASCSIFGPKGIGVVTRIAAMTTESVYNFLQHQLSSMEPLLGVKPYS 294

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222143566|dbj|BAH19312.1| urease accessory protein ureD [Morus alba]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/303 (62%), Positives = 231/303 (76%), Gaps = 27/303 (8%)

Query: 9   REREMESKIEAATGKLVVKKVGGKSTVTRCFSKYPLKFIIPNKVGSSETDAVWVYTLTYG 68
           RE E+  ++E  TG  VV+KVG KSTVTRC+SKYPLKFI+P K+G+S+TDAVW+YTLTYG
Sbjct: 2   RESELRKEMEQ-TGTAVVEKVGDKSTVTRCYSKYPLKFIVPKKLGNSKTDAVWIYTLTYG 60

Query: 69  GGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQILE--------------- 113
           GGIVSGDSISC+ T++D CT VLTTQASTKVYKSLGSK S Q+LE               
Sbjct: 61  GGIVSGDSISCDFTISDGCTTVLTTQASTKVYKSLGSKCSVQVLEARVGNNALLAVIPDP 120

Query: 114 -----------KQIFRVVLDSSLVIVDWITSGRHESGEKWDFELYRSTNHIFLEGDQPLF 162
                      KQ+FR++ D+SL++VDW+TSGRHESGEKWDF+LY+STNHIFLE ++PL 
Sbjct: 121 VTCFSTARYTQKQVFRMLSDASLIVVDWVTSGRHESGEKWDFDLYKSTNHIFLEDNEPLL 180

Query: 163 LDSVLLEQGNITNIAERMQDYQVIAMVILLGPKLKQIQIQVQENVRRMMSEQLYLPSTGL 222
           LD+VLLE+G++++I ERMQ+YQV+AMV+  GPK+K IQ QVQE VRRMM+EQL   S   
Sbjct: 181 LDTVLLEKGSMSSITERMQEYQVVAMVVFWGPKMKHIQNQVQEEVRRMMTEQLQFYSPAS 240

Query: 223 RPHGKTQSDHFLAKPSFVVSCSAFGPKGIGIVVRIAAMTTESVYRFLQHQLAGMETLLGV 282
               K  S +   KP+F+VS S FGP+G G+VVRI A TTESVY FLQHQLAG+E LLG+
Sbjct: 241 AQRMKRSSTYCTNKPNFIVSSSVFGPQGKGVVVRIVATTTESVYTFLQHQLAGLEPLLGL 300

Query: 283 SPY 285
           SPY
Sbjct: 301 SPY 303

Source: Morus alba

Species: Morus alba

Genus: Morus

Family: Moraceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575140|ref|XP_003555700.1| PREDICTED: urease accessory protein ureD-like isoform 1 [Glycine max]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 181/307 (58%), Positives = 230/307 (74%), Gaps = 33/307 (10%)

Query: 5   RHREREREMESKIEAATGKLVVKKVGGKSTVTRCFSKYPLKFIIPNKVGSSETDAVWVYT 64
           R  E +REME       G +VV+KVGG+S+VT CFS+YPLKF+IP KVGSS+TDAVWVY 
Sbjct: 2   RSGEADREME------MGSVVVEKVGGRSSVTSCFSRYPLKFVIPKKVGSSKTDAVWVYA 55

Query: 65  LTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQILE----------- 113
           L YGGGIVSGD+ISC+ +V D CT VLTTQ STKVYKS+GSK S+QILE           
Sbjct: 56  LNYGGGIVSGDNISCKFSVGDTCTMVLTTQGSTKVYKSVGSKCSQQILEARVGSNALLAI 115

Query: 114 ---------------KQIFRVVLDSSLVIVDWITSGRHESGEKWDFELYRSTNHIFLEGD 158
                          KQ+F V+ DS+LV+VDWITSGRHESGEKWDF+LYRS+N+IFLE  
Sbjct: 116 IPDPVTCFSTARYCQKQVFCVLPDSNLVMVDWITSGRHESGEKWDFDLYRSSNNIFLEDG 175

Query: 159 QPLFLDSVLLEQGNITNIAERMQDYQVIAMVILLGPKLKQIQIQVQENVRRMMSEQLYLP 218
           QPLFLD++LL++  I  + E M +YQVIAM++LLGPK++ +Q +VQ++V+ +MSEQL  P
Sbjct: 176 QPLFLDTMLLDKEKIGCVQEHMHNYQVIAMIVLLGPKVQYVQNRVQDHVKEVMSEQLQHP 235

Query: 219 STGLRPHGKTQSDHFLAKPSFVVSCSAFGPKGIGIVVRIAAMTTESVYRFLQHQLAGMET 278
           S     H + ++DHF+ KPSF+ SCSAFGPK IG++VR+AA TTESVY+FL+HQLA +E 
Sbjct: 236 SAAWS-HQRDKADHFITKPSFIASCSAFGPKRIGLLVRVAAETTESVYKFLRHQLAPLEP 294

Query: 279 LLGVSPY 285
           ++GV PY
Sbjct: 295 MIGVPPY 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727327|ref|NP_001236645.1| urease accessory protein UreD [Glycine max] gi|24286395|gb|AAN47008.1| urease accessory protein UreD [Glycine max]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/290 (61%), Positives = 224/290 (77%), Gaps = 27/290 (9%)

Query: 22  GKLVVKKVGGKSTVTRCFSKYPLKFIIPNKVGSSETDAVWVYTLTYGGGIVSGDSISCEI 81
           G +VV+KVGG+S+VT CFS+YPLKFIIP KVGSS+TDAVWVY L YGGGIVSGD+ISC+ 
Sbjct: 4   GSVVVEKVGGRSSVTSCFSRYPLKFIIPKKVGSSKTDAVWVYALNYGGGIVSGDNISCKF 63

Query: 82  TVADACTAVLTTQASTKVYKSLGSKSSEQILE--------------------------KQ 115
           +V D CT VLTTQ STKVYKS+GSK S+QILE                          KQ
Sbjct: 64  SVGDTCTMVLTTQGSTKVYKSVGSKCSQQILEARVGSNALLAIIPDPVTCFSTARYCQKQ 123

Query: 116 IFRVVLDSSLVIVDWITSGRHESGEKWDFELYRSTNHIFLEGDQPLFLDSVLLEQGNITN 175
           +F V+ DS+LV+VDWITSGRHESGEKWDF+LYRSTN+IFLE  QPLFLD++LL++  I  
Sbjct: 124 VFCVLPDSNLVMVDWITSGRHESGEKWDFDLYRSTNNIFLEDGQPLFLDTMLLDKEKIGC 183

Query: 176 IAERMQDYQVIAMVILLGPKLKQIQIQVQENVRRMMSEQLYLPSTGLRPHGKTQSDHFLA 235
           + E M +YQVIAM++LLGPK++ +Q +VQ++V+++MSEQL  PS     H + ++DHF+ 
Sbjct: 184 VQEHMHNYQVIAMIVLLGPKVQYVQNRVQDHVKKVMSEQLQHPSAAWS-HQRDKADHFIT 242

Query: 236 KPSFVVSCSAFGPKGIGIVVRIAAMTTESVYRFLQHQLAGMETLLGVSPY 285
           KPSF+ SCSAFGPK IG++VR+AA TTESVY+FL+HQLA +E ++GV PY
Sbjct: 243 KPSFIASCSAFGPKKIGLLVRVAAETTESVYKFLRHQLAPLEPMIGVPPY 292

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30686277|ref|NP_850239.1| urease accessory protein D [Arabidopsis thaliana] gi|31096381|emb|CAC85462.1| putative urease accessory protein D [Arabidopsis thaliana] gi|330253958|gb|AEC09052.1| urease accessory protein D [Arabidopsis thaliana]

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 176/293 (60%), Positives = 220/293 (75%), Gaps = 26/293 (8%)

Query: 20  ATGKLVVKKVGGKSTVTRCFSKYPLKFIIPNKVGSSETDAVWVYTLTYGGGIVSGDSISC 79
           ATGK+VV+KVGG+ST T CFSKYPLKF++P+K   + TD VW+Y++TYGGGIVSGDSISC
Sbjct: 2   ATGKVVVEKVGGRSTATSCFSKYPLKFLLPSKAAPAGTDVVWIYSITYGGGIVSGDSISC 61

Query: 80  EITVADACTAVLTTQASTKVYKSLGSKSSEQILE-------------------------- 113
           E T+ D CTAV+TTQ+STKVYK++GSK SEQILE                          
Sbjct: 62  EFTIGDGCTAVITTQSSTKVYKAIGSKCSEQILEARIGSEALLVVIPDPVTCFSTARYYQ 121

Query: 114 KQIFRVVLDSSLVIVDWITSGRHESGEKWDFELYRSTNHIFLEGDQPLFLDSVLLEQGNI 173
           KQIFR++ DS+LV+VDWITSGRH +GEKWDFE Y+S N+++LE D PLFLD+VLLE+ +I
Sbjct: 122 KQIFRLLSDSNLVLVDWITSGRHANGEKWDFEFYKSINNVYLEDDHPLFLDTVLLEKRSI 181

Query: 174 TNIAERMQDYQVIAMVILLGPKLKQIQIQVQENVRRMMSEQLYLPSTGLRPHGKTQSDHF 233
            +IAERMQDYQ IAMVIL G KLK+IQ QVQENV+ MMSEQL L  +  R   ++ S + 
Sbjct: 182 QSIAERMQDYQAIAMVILFGAKLKEIQKQVQENVKNMMSEQLQLSYSSRRHKSESSSRNR 241

Query: 234 LAKPSFVVSCSAFGPKGIGIVVRIAAMTTESVYRFLQHQLAGMETLLGVSPYS 286
             KP F+ SCS FGP+G G+VVRIA+ +TESVY FL+ QLA +E +LG +PY+
Sbjct: 242 FMKPEFIASCSTFGPEGKGVVVRIASDSTESVYNFLRQQLAELEPVLGQAPYA 294

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826977|ref|XP_002881371.1| hypothetical protein ARALYDRAFT_482469 [Arabidopsis lyrata subsp. lyrata] gi|297327210|gb|EFH57630.1| hypothetical protein ARALYDRAFT_482469 [Arabidopsis lyrata subsp. lyrata]

 Score =  356 bits (914), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 172/293 (58%), Positives = 216/293 (73%), Gaps = 27/293 (9%)

Query: 20  ATGKLVVKKVGGKSTVTRCFSKYPLKFIIPNKVGSSETDAVWVYTLTYGGGIVSGDSISC 79
           ATGK+VV+KVGG+ST T CFSKYPLKF++P+K   + TD VW+Y++TYGGGIVSGDSI C
Sbjct: 2   ATGKVVVEKVGGRSTATSCFSKYPLKFLLPSKAAPAGTDVVWIYSITYGGGIVSGDSILC 61

Query: 80  EITVADACTAVLTTQASTKVYKSLGSKSSEQILE-------------------------- 113
           E T+ D CTAV+TTQ+STKVYK++GSK SEQ LE                          
Sbjct: 62  EFTIGDGCTAVITTQSSTKVYKAIGSKCSEQTLEARIGSEALLVVIPDPVTCFSTARYFQ 121

Query: 114 KQIFRVVLDSSLVIVDWITSGRHESGEKWDFELYRSTNHIFLEGDQPLFLDSVLLEQGNI 173
           KQIFR++ DS+LV+VDWITSGRH +GEKWDFE Y+S N+++LE D PLFLD+VLLE+ +I
Sbjct: 122 KQIFRLLSDSNLVLVDWITSGRHANGEKWDFEFYKSINNVYLEDDHPLFLDTVLLEKRSI 181

Query: 174 TNIAERMQDYQVIAMVILLGPKLKQIQIQVQENVRRMMSEQLYLPSTGLRPHGKTQSDHF 233
             IAERMQDY  IAMVIL G KLK+IQ QVQENV+ MMSEQL +  +       + S+ F
Sbjct: 182 QTIAERMQDYHAIAMVILFGAKLKEIQKQVQENVKNMMSEQLQILCSRRHKSESSSSNRF 241

Query: 234 LAKPSFVVSCSAFGPKGIGIVVRIAAMTTESVYRFLQHQLAGMETLLGVSPYS 286
           + KP F+ SCS FGP+G G+V+RIA+ +TESVY FL+ QLA +E LLG +PY+
Sbjct: 242 M-KPEFIASCSTFGPEGKGVVIRIASDSTESVYNFLKQQLAELEPLLGQAPYA 293

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433497|ref|XP_004134534.1| PREDICTED: urease accessory protein UreD-like [Cucumis sativus] gi|449490663|ref|XP_004158670.1| PREDICTED: urease accessory protein UreD-like [Cucumis sativus]

 Score =  355 bits (912), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 180/291 (61%), Positives = 207/291 (71%), Gaps = 27/291 (9%)

Query: 22  GKLVVKKVGGKSTVTRCFSKYPLKFIIPNKVGSSETDAVWVYTLTYGGGIVSGDSISCEI 81
           G +VV+KV GKS VTRCFSKYPLKFIIP KVG S+TD +W+YTL YGGGIVSGDSISCE+
Sbjct: 5   GAVVVEKVAGKSAVTRCFSKYPLKFIIPRKVGPSKTDCIWIYTLNYGGGIVSGDSISCEL 64

Query: 82  TVADACTAVLTTQASTKVYKSLGSKSSEQILE--------------------------KQ 115
           TV D   AVLTTQASTKVYKS G + SEQ+LE                          KQ
Sbjct: 65  TVKDGSNAVLTTQASTKVYKSRGEELSEQLLEARIGSDALLAVLPDPVTCFATARYAQKQ 124

Query: 116 IFRVVLDSSLVIVDWITSGRHESGEKWDFELYRSTNHIFLEGDQPLFLDSVLLEQGNITN 175
           +FRV   SSLV+VDW TSGRH SGE W+F+L++STN IFLE   PLF D+VLLE+G I  
Sbjct: 125 VFRVGSGSSLVLVDWFTSGRHGSGEIWEFDLFKSTNQIFLEDGHPLFFDTVLLERGGINT 184

Query: 176 IAERMQDYQVIAMVILLGPKLKQIQIQVQENVRRMMSEQLYLPSTGLR-PHGKTQSDHFL 234
           I ERM  YQVIAMV++LGPK+K I+ QV+ENV+ +M EQL+ P T  R P  K  S+  L
Sbjct: 185 IIERMHGYQVIAMVVILGPKVKNIRDQVRENVKMIMGEQLHSPFTSARGPQMKMNSNRLL 244

Query: 235 AKPSFVVSCSAFGPKGIGIVVRIAAMTTESVYRFLQHQLAGMETLLGVSPY 285
            KP  + S S FGP GIG VVRIAAM TE+VYRFLQ QLA METLLGV PY
Sbjct: 245 TKPEIIASSSVFGPMGIGTVVRIAAMETETVYRFLQQQLASMETLLGVPPY 295

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
TAIR|locus:504956057	294	URED "urease accessory protein	0.629	0.612	0.605	1.6e-54
ASPGD|ASPL0000046594	357	AN2144 [Emericella nidulans (t	0.255	0.204	0.390	1.4e-13
POMBASE|SPAC3A12.09c	290	SPAC3A12.09c "urease accessory	0.258	0.255	0.367	2.2e-13
UNIPROTKB|G4MQ94	339	MGG_09264 "Urease accessory pr	0.290	0.244	0.325	6.3e-06
UNIPROTKB|Q09063	270	ureD "Urease accessory protein	0.181	0.192	0.307	0.00089

TAIR|locus:504956057 URED "urease accessory protein D" [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 109/180 (60%), Positives = 141/180 (78%)

Query:   107 SSEQILEKQIFRVVLDSSLVIVDWITSGRHESGEKWDFELYRSTNHIFLEGDQPLFLDSV 166
             S+ +  +KQIFR++ DS+LV+VDWITSGRH +GEKWDFE Y+S N+++LE D PLFLD+V
Sbjct:   115 STARYYQKQIFRLLSDSNLVLVDWITSGRHANGEKWDFEFYKSINNVYLEDDHPLFLDTV 174

Query:   167 LLEQGNITNIAERMQDYQVIAMVILLGPKLKQIQIQVQENVRRMMSEQLYLPSTGLRPHG 226
             LLE+ +I +IAERMQDYQ IAMVIL G KLK+IQ QVQENV+ MMSEQL L  +  R   
Sbjct:   175 LLEKRSIQSIAERMQDYQAIAMVILFGAKLKEIQKQVQENVKNMMSEQLQLSYSSRRHKS 234

Query:   227 KTQSDHFLAKPSFVVSCSAFGPKGIGIVVRIAAMTTESVYRFLQHQLAGMETLLGVSPYS 286
             ++ S +   KP F+ SCS FGP+G G+VVRIA+ +TESVY FL+ QLA +E +LG +PY+
Sbjct:   235 ESSSRNRFMKPEFIASCSTFGPEGKGVVVRIASDSTESVYNFLRQQLAELEPVLGQAPYA 294

GO:0005737 "cytoplasm" evidence=ISM

GO:0006807 "nitrogen compound metabolic process" evidence=IEA;ISS;IMP

GO:0016151 "nickel cation binding" evidence=IEA;ISS

GO:0048554 "positive regulation of metalloenzyme activity" evidence=IMP

ASPGD|ASPL0000046594 AN2144 [Emericella nidulans (taxid:162425)]

 Score = 121 (47.7 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
 Identities = 32/82 (39%), Positives = 43/82 (52%)

Query:    41 KYPLKFI------IPNKVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTT- 93
             KYPLK +      +P     S    V +Y LTYGGG++ GD I   IT+      V+TT 
Sbjct:    37 KYPLKLLTRTGGFVPQSTLPSAFQPVHLYLLTYGGGLLPGDQIDVSITLEPRTRLVVTTP 96

Query:    94 QASTKVYKSLGSKSSEQILEKQ 115
             Q STK++K+    S E+ L  Q
Sbjct:    97 QGSTKIFKT--EASPERTLSDQ 116

GO:0016151 "nickel cation binding" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

POMBASE|SPAC3A12.09c SPAC3A12.09c "urease accessory protein UreD (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 140 (54.3 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
 Identities = 29/79 (36%), Positives = 49/79 (62%)

Query:    39 FSKYPLKFIIPNKVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTK 98
             F KYPLK I P     ++ D   +Y ++YGGG+VSGD ++ +I V    T  + +Q +TK
Sbjct:    23 FCKYPLKLIAPK----TKLDFSILYIMSYGGGLVSGDRVALDIIVGKNATLCIQSQGNTK 78

Query:    99 VYKSL-GSKSSEQILEKQI 116
             +YK + G  +++Q L+ ++
Sbjct:    79 LYKQIPGKPATQQKLDVEV 97

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016151 "nickel cation binding" evidence=IEA

GO:0019627 "urea metabolic process" evidence=ISM

UNIPROTKB|G4MQ94 MGG_09264 "Urease accessory protein UreD" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 129 (50.5 bits), Expect = 6.3e-06, P = 6.3e-06
 Identities = 29/89 (32%), Positives = 53/89 (59%)

Query:    41 KYPLKFIIPNKVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVY 100
             +YPLK I P +   ++  +V V+ L+YGGG+V+GD ++ +I V       + TQ  TKV+
Sbjct:    37 RYPLKLITPPR--PTDRQSVLVFLLSYGGGLVAGDQVALDIDVQAGARVSIVTQGYTKVF 94

Query:   101 KSLGSKSSEQILEKQI-FRVVLDSSLVIV 128
             KS    S + +  +++  R+  D++L ++
Sbjct:    95 KS---PSCDVVTRQELRVRIADDAALCLL 120

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q09063 ureD "Urease accessory protein UreD" [Enterobacter aerogenes (taxid:548)]

 Score = 81 (33.6 bits), Expect = 0.00089, Sum P(2) = 0.00089
 Identities = 16/52 (30%), Positives = 29/52 (55%)

Query:    56 ETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKS 107
             E +   +Y L   GGIV GD ++    +A  C  ++T   ++K Y+S G+++
Sbjct:    44 EEETCHLYLLHPPGGIVGGDELTISAHLAPGCHTLITMPGASKFYRSSGAQA 95

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00030131001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (291 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00003436001	SubName- Full=Chromosome undetermined scaffold_143, whole genome shotgun sequence; (252 aa)	•	•	•			•	•		0.968
	GSVIVG00035066001	RecName- Full=Urease; EC=3.5.1.5; (506 aa)	•		•			•	•		0.940
	GSVIVG00035063001	SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (127 aa)	•		•		•	•	•		0.915
	GSVIVG00035064001	SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (120 aa)	•		•			•	•		0.868
	GSVIVG00017280001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (284 aa)	•		•				•		0.687

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	286
pfam01774	204	pfam01774, UreD, UreD urease accessory protein	8e-38
COG0829	269	COG0829, UreH, Urease accessory protein UreH [Post	4e-34

>gnl|CDD|216693 pfam01774, UreD, UreD urease accessory protein

 Score =  132 bits (334), Expect = 8e-38
 Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 29/172 (16%)

Query: 61  WVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQI--------- 111
            VY L   GG+V GD +  +I +     A+LTTQ +TKVY+S G  + +           
Sbjct: 1   HVYLLHPSGGLVGGDRLDIDIELGAGARALLTTQGATKVYRSEGGPARQTTRLTVGAGAR 60

Query: 112 LE--------------KQIFRVVL--DSSLVIVDWITSGRHESGEKWDFELYRSTNHIFL 155
           LE              +Q   V L   +SL+  + +T GR   GE++ F   RS   I  
Sbjct: 61  LEWLPQETILFDGARFRQTTTVDLAPGASLLGWEIVTLGRPAMGERFAFGRLRSRLEIRR 120

Query: 156 EGDQPLFLDSVLLE--QGNITNIAERMQDYQVIAMVILLGPKLKQIQIQVQE 205
           +G + L LD + L+     + + A  +  Y V   ++L+GP  + +   ++ 
Sbjct: 121 DG-RLLLLDRLRLDPDDAALASPA-GLGGYPVFGTLVLVGPDAEALLEALRA 170

UreD is a urease accessory protein. Urease pfam00449 hydrolyses urea into ammonia and carbamic acid. UreD is involved in activation of the urease enzyme via the UreD-UreF-UreG-urease complex and is required for urease nickel metallocenter assembly. See also UreF pfam01730, UreG pfam01495. Length = 204

>gnl|CDD|223899 COG0829, UreH, Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones]

 Score =  124 bits (313), Expect = 4e-34
 Identities = 64/285 (22%), Positives = 113/285 (39%), Gaps = 61/285 (21%)

Query: 13  MESKIEAATGKLVVKKVGGKSTVTRCFSKYPLKFIIPNKVGSSETDAVWVYTLTYGGGIV 72
           M +K      +L   +  G++ +   F   PLK   P      +        +   GG+V
Sbjct: 1   MGTKGWNGKLRLRFARRDGRTRLATLFQTGPLKVQRPF---YPDEGLCEAMLIHPSGGVV 57

Query: 73  SGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQI---------LE---------- 113
            GD +  +I + D   A++TTQ++TKVY+S G ++++           LE          
Sbjct: 58  GGDRLEIDIELGDNAKALITTQSATKVYRSPGGQATQTTNITVGENARLEWLPQETIPFE 117

Query: 114 ----KQIFRVVLDSS--LVIVDWITSGRHESGEKWDFELYRSTNHIFLEGDQPLFLDSVL 167
               KQ  R  L SS  L+  + +  GR   GE++ +  +RS   I+ +G + L LD +L
Sbjct: 118 GARFKQHTRFELASSATLLYWEILALGRVAMGERFAYGRFRSRWEIYQDG-RLLLLDRLL 176

Query: 168 LEQGNITNIAER--MQDYQVIAMVILLGPKLKQIQI-QVQENVRRMMSEQLYLPSTGLRP 224
           L   +  N+  R  M  Y     + LL   + +  + +++E +                 
Sbjct: 177 L-DPDEPNLNARGAMAGYHHAGALYLLNEPVDEALLEKLREALEGY-------------- 221

Query: 225 HGKTQSDHFLAKPSFVVSCSAFGPKGIGIVVRIAAMTTESVYRFL 269
                        +  VS +A      G++ R+ A +TE +   L
Sbjct: 222 ----------DGGASGVSQTATS----GLLARVLAASTEELRALL 252

Length = 269

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	286
COG0829	269	UreH Urease accessory protein UreH [Posttranslatio	100.0
PF01774	209	UreD: UreD urease accessory protein; InterPro: IPR	100.0

>COG0829 UreH Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3e-50  Score=363.14  Aligned_cols=233  Identities=25%  Similarity=0.378  Sum_probs=199.6

Q ss_pred             cccccceeEEEEEEEeCCeeEEeeeeeeccEEEeccccCCCCCCCcEEEEEeccCcceecCcEEEEEEEEcCCcEEEEeC
Q 038992           14 ESKIEAATGKLVVKKVGGKSTVTRCFSKYPLKFIIPNKVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTT   93 (286)
Q Consensus        14 ~~~~~~~~g~L~~~~~~g~T~l~~~~~~~Plkl~~p~~~~~~~~~~~~v~ll~~~GGl~~GD~l~i~i~v~~ga~l~ltT   93 (286)
                      +.+.....++|.|++++|+|++.+++|++||||++|++.+   ++.|++||+|+|||+++||+++++|++++||+++|||
T Consensus         2 ~~~~~~~~L~L~~~~~~g~t~l~~~~~~~plkV~~p~y~~---~~~~~~~li~~~GGv~gGD~l~~di~lg~~a~~~iTT   78 (269)
T COG0829           2 GTKGWNGKLRLRFARRDGRTRLATLFQTGPLKVQRPFYPD---EGLCEAMLIHPSGGVVGGDRLEIDIELGDNAKALITT   78 (269)
T ss_pred             CcccccceEEEEEEecCCcEEehhhhccCCeEEEccCcCC---CCCeEEEEEeCCCCccccceEEEEEEECCCceEEEEc
Confidence            4455566777889999999999999999999999997644   5789999999999999999999999999999999999


Q ss_pred             cccceeecCCCCCcceeE----------EE----------------EEEEEEcCCceEEEeeeeccCCCCCCCccccceE
Q 038992           94 QASTKVYKSLGSKSSEQI----------LE----------------KQIFRVVLDSSLVIVDWITSGRHESGEKWDFELY  147 (286)
Q Consensus        94 Qsatkvy~~~~~~~s~q~----------le----------------~~~i~L~~~A~ll~~d~i~~GR~a~GE~f~~~~~  147 (286)
                      |||||||||.++.+ +|.          ||                .++|+|+++|+|++|||+++||+++||+|+|++|
T Consensus        79 QsatKvYrs~~g~A-~Q~~~i~vg~nA~LewlPq~tI~F~~a~f~q~~~~~L~~sA~l~~~E~~~~GR~~~GE~f~~~~~  157 (269)
T COG0829          79 QSATKVYRSPGGQA-TQTTNITVGENARLEWLPQETIPFEGARFKQHTRFELASSATLLYWEILALGRVAMGERFAYGRF  157 (269)
T ss_pred             cccceeEeCCCCce-EEEEEEEECCCCEEEecCCcceecCCceeEEEEEEEeCCCceehhhhhhhcCcccccchhhhhhh
Confidence            99999999999875 544          22                9999999999999999999999999999999999


Q ss_pred             EEEEEEEEcCCEEEEEEeeeeeCCCc-CchhhccCCCcEEEEEEEECCCchhHHHHHHHHHHHHhhhcccCCCCCCCCCC
Q 038992          148 RSTNHIFLEGDQPLFLDSVLLEQGNI-TNIAERMQDYQVIAMVILLGPKLKQIQIQVQENVRRMMSEQLYLPSTGLRPHG  226 (286)
Q Consensus       148 ~s~~~I~~~gg~ll~~D~~~L~~~~~-~~~~~~~~g~~~~gtl~~v~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  226 (286)
                      +++|+||.+| +||+.|++.|.|++. ......|+||.|+|++|++++...   +.+++++++.+...            
T Consensus       158 ~s~~~I~~~~-~lv~~d~~~l~p~~~~l~~~~~~~g~~~~g~~~~~~~~~~---~~~l~~~~~~l~~~------------  221 (269)
T COG0829         158 RSRWEIYQDG-RLLLLDRLLLDPDEPNLNARGAMAGYHHAGALYLLNEPVD---EALLEKLREALEGY------------  221 (269)
T ss_pred             heeeEEEECC-EEEEEEeEEecCCcccccccccccCceEEEEEEEeccchh---HHHHHHHHHhhhcc------------
Confidence            9999999998 999999999999985 567788999999999999998775   23444444332211            


Q ss_pred             CccCccccCCCceEEEEeeeccCCcEEEEEEccCCHHHHHHHHHHHHHHhhH
Q 038992          227 KTQSDHFLAKPSFVVSCSAFGPKGIGIVVRIAAMTTESVYRFLQHQLAGMET  278 (286)
Q Consensus       227 ~~~~~~~~~~~~~~~~~s~l~~~~~glvvR~la~~~e~lr~~l~~~~~~lr~  278 (286)
                          +      +..++.|..  ..+++++|++|++++.+|+++..+|+.+|.
T Consensus       222 ----~------~~~~~~s~~--~~~~l~~R~la~~~~~lr~~l~~l~~~lr~  261 (269)
T COG0829         222 ----D------GGASGVSQT--ATSGLLARVLAASTEELRALLEKLWSLLRG  261 (269)
T ss_pred             ----C------CcceeeEEc--CCCcEEEEEecCCcHHHHHHHHHHHHHhhc
Confidence                0      112334432  358999999999999999999999999987

>PF01774 UreD: UreD urease accessory protein; InterPro: IPR002669 UreD is a urease accessory protein

Probab=100.00  E-value=4.8e-44  Score=315.42  Aligned_cols=182  Identities=32%  Similarity=0.519  Sum_probs=126.7

Q ss_pred             EEEEeccCcceecCcEEEEEEEEcCCcEEEEeCcccceeecCCCCCcceeE----------EE----------------E
Q 038992           61 WVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQI----------LE----------------K  114 (286)
Q Consensus        61 ~v~ll~~~GGl~~GD~l~i~i~v~~ga~l~ltTQsatkvy~~~~~~~s~q~----------le----------------~  114 (286)
                      |+||+|+||||++||+++++|+|++||+++|||||||||||++++..++|.          ||                +
T Consensus         1 h~yl~~~~gGl~~GD~l~~~i~v~~ga~~~ltTqaatkvy~~~~~~~a~q~~~~~v~~ga~Le~lP~p~I~f~~A~~~q~   80 (209)
T PF01774_consen    1 HVYLMNPSGGLLGGDRLRIDITVGPGARLLLTTQAATKVYRMRGGRPARQRIRITVEEGAYLEYLPDPTIPFAGARFRQR   80 (209)
T ss_dssp             -EEEEE--S-B-TT-EEEEEEEE-TT-EEEEE----EEE---TTS--EEEEEEEEE-TT-EEEE----EEE-TT-EEEEE
T ss_pred             CEEEEeCCCcCcCCCEEEEEEEECCCCEEEEechhhhhhcCCCCCCcEEEEEEEEECCCCEEEEcCCCCEeeCCCEEEEE
Confidence            689999999999999999999999999999999999999999888644554          22                9


Q ss_pred             EEEEEcCCceEEEeeeeccCCCCCCCccccceEEEEEEEEEcCCEEEEEEeeeeeCCCc-CchhhccCCCcEEEEEEEEC
Q 038992          115 QIFRVVLDSSLVIVDWITSGRHESGEKWDFELYRSTNHIFLEGDQPLFLDSVLLEQGNI-TNIAERMQDYQVIAMVILLG  193 (286)
Q Consensus       115 ~~i~L~~~A~ll~~d~i~~GR~a~GE~f~~~~~~s~~~I~~~gg~ll~~D~~~L~~~~~-~~~~~~~~g~~~~gtl~~v~  193 (286)
                      ++|+|+++|+|+++||+++||+++||+|+|++|+++++|+++| +|++.|+++|+|++. ...++.|++|+++||+|+++
T Consensus        81 ~~v~l~~~A~l~~~e~i~~GR~a~GE~f~~~~~~~~~~I~~~g-~ll~~d~~~l~p~~~~~~~~~~~~g~~~~~tl~~~~  159 (209)
T PF01774_consen   81 TRVDLAPGASLIYWEIITPGRPARGERFAFGRYRSRLEIYRDG-RLLLRDRLRLEPGENNLSSPGGLGGYTHFGTLYLVG  159 (209)
T ss_dssp             EEEEE-TT-EEEEEEEEE-S-GGGT--S-SSEEEEEEEEEETT-EEEEEEEEEE-TTTS-TTSTTTTTT--EEEEEEEES
T ss_pred             EEEEECCCCEEEEEEecccCCCcCCCCccceEEEEEEEEEECC-EEEEEEeeEECCCCcCccCchhhCCCCEEEEEEEEe
Confidence            9999999999999999999999999999999999999999988 999999999999874 56678999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHhhhcccCCCCCCCCCCCccCccccCCCceEEEEeeeccCCcEEEEEEccCCHHHHHHHH
Q 038992          194 PKLKQIQIQVQENVRRMMSEQLYLPSTGLRPHGKTQSDHFLAKPSFVVSCSAFGPKGIGIVVRIAAMTTESVYRFL  269 (286)
Q Consensus       194 p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~glvvR~la~~~e~lr~~l  269 (286)
                      |......+.+.+.+++.+.                       .+++.+|+|.+   ++|++||+||++++.++++|
T Consensus       160 p~~~~~~~~~~~~l~~~~~-----------------------~~~~~~g~S~l---~~g~~vR~la~~~~~l~~~~  209 (209)
T PF01774_consen  160 PDSEEDAEALLERLRALLD-----------------------DPGVYAGASRL---GGGLVVRILANDAEDLRRAL  209 (209)
T ss_dssp             -S--------HHHHHHHHT------------------------TTEEEEEEE----TS-EEEEEEESSHHHHHH--
T ss_pred             CccchhHHHHHHHHHHhhh-----------------------cCCcEEEEEEc---CCeEEEEEeeCCHHHHhcCC
Confidence            9743333556666665431                       12588999986   78999999999999999986

Urease IPR005848 from INTERPRO hydrolyses urea into ammonia and carbamic acid []. UreD is involved in activation of the urease enzyme via the UreD-UreF-UreG-urease complex [] and is required for urease nickel metallocentre assembly []. See also UreF IPR002639 from INTERPRO, UreG IPR004400 from INTERPRO.; GO: 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 3SF5_D.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	286
3sf5_B	265	Urease accessory protein UREH; UREF, chaperone; 2.	5e-31

>3sf5_B Urease accessory protein UREH; UREF, chaperone; 2.50A {Helicobacter pylori} Length = 265

 Score =  115 bits (289), Expect = 5e-31
 Identities = 44/287 (15%), Positives = 97/287 (33%), Gaps = 63/287 (21%)

Query: 13  MESKIEAATGKLVVK-KVGGKSTVTRCFSKYPLKFIIPNKVGSSETDAVWVYTLTYGGGI 71
           M +  + +  +L  K    G+  +   F   P K + P      + D   +  L    G+
Sbjct: 1   MNTYAQESKLRLKTKIGADGRCVIEDNFFTPPFKLMAPFY---PKDDLAEIMLLAVSPGM 57

Query: 72  VSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQI---------LE--------- 113
           + GD+   ++ +   C   +T+Q+  K++ +    +S  +         L+         
Sbjct: 58  MRGDAQDVQLNIGPNCKLRITSQSFEKIHNTEDGFASRDMHIVVGENAFLDFAPFPLIPF 117

Query: 114 -----KQIFRVVL--DSSLVIVDWITSGRHESGEKWDFELYRSTNHIFLEGDQPLFLDSV 166
                K    + L   S L+  + I +GR    E + F    +   I  +  +P++ D+ 
Sbjct: 118 ENAHFKGNTTISLRSSSQLLYSEIIVAGRVARNELFKFNRLHTKISILQDE-KPIYYDNT 176

Query: 167 LLEQG--NITNIAERMQDYQVIAMVILLGPKLKQIQIQVQENVRRMMSEQLYLPSTGLRP 224
           +L+    ++ N+      Y     ++L+   ++         VR  + E   +       
Sbjct: 177 ILDPKTTDLNNMC-MFDGYTHYLNLVLVNCPIE------LSGVRECIEESEGV------- 222

Query: 225 HGKTQSDHFLAKPSFVVSCSAFGPKGIGIVVRIAAMTTESVYRFLQH 271
                           VS +A       + V+  A  +E +    + 
Sbjct: 223 -------------DGAVSETASS----HLCVKALAKGSEPLLHLREK 252

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	286
3sf5_B	265	Urease accessory protein UREH; UREF, chaperone; 2.	100.0

>3sf5_B Urease accessory protein UREH; UREF, chaperone; 2.50A {Helicobacter pylori}

Probab=100.00  E-value=1.1e-52  Score=380.90  Aligned_cols=235  Identities=17%  Similarity=0.255  Sum_probs=201.2

Q ss_pred             hcccccceeEEEEEEEe-CCeeEEeeeeeeccEEEeccccCCCCCCCcEEEEEeccCcceecCcEEEEEEEEcCCcEEEE
Q 038992           13 MESKIEAATGKLVVKKV-GGKSTVTRCFSKYPLKFIIPNKVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVL   91 (286)
Q Consensus        13 ~~~~~~~~~g~L~~~~~-~g~T~l~~~~~~~Plkl~~p~~~~~~~~~~~~v~ll~~~GGl~~GD~l~i~i~v~~ga~l~l   91 (286)
                      |++.......+|.|+.+ +|+|++.++++++||||++|++  +++ +.+++||+|++||+++||+++|+|+|++||+++|
T Consensus         1 ~~~~g~~a~L~L~~~~~~~grT~l~~~~~~~Plkv~~p~~--~~~-~~~~v~ll~~~gGl~gGD~l~i~i~v~~ga~~~l   77 (265)
T 3sf5_B            1 MNTYAQESKLRLKTKIGADGRCVIEDNFFTPPFKLMAPFY--PKD-DLAEIMLLAVSPGMMRGDAQDVQLNIGPNCKLRI   77 (265)
T ss_dssp             ----CCEEEEEEEEEECTTSSEEEEEEEECTTEEECCCBC--SST-TCEEEEEEECCSCBCTTCEEEEEEEECTTCEEEE
T ss_pred             CCCCceEEEEEEEEEECCCCceEeeeeEeccCeEEEeccc--CCC-CcEEEEEEcCCCCCcCCCEEEEEEEECCCCEEEE
Confidence            34444444555789999 9999999999999999999976  432 5799999999999999999999999999999999


Q ss_pred             eCcccceeecCCCCCcceeE----------EE----------------EEEEEEcCCceEEEeeeeccCCCCCCCccccc
Q 038992           92 TTQASTKVYKSLGSKSSEQI----------LE----------------KQIFRVVLDSSLVIVDWITSGRHESGEKWDFE  145 (286)
Q Consensus        92 tTQsatkvy~~~~~~~s~q~----------le----------------~~~i~L~~~A~ll~~d~i~~GR~a~GE~f~~~  145 (286)
                      ||||||||||+.++.+ +|.          ||                +++|+|+++|+|+++||+++||+++||.|.|+
T Consensus        78 tTqaatkvy~~~~~~a-~q~~~~~v~~ga~Le~lP~p~I~f~~a~~~~~~~v~L~~~A~l~~~e~~~~GR~a~GE~f~~g  156 (265)
T 3sf5_B           78 TSQSFEKIHNTEDGFA-SRDMHIVVGENAFLDFAPFPLIPFENAHFKGNTTISLRSSSQLLYSEIIVAGRVARNELFKFN  156 (265)
T ss_dssp             ECCCCEEECCCTTSCE-EEEEEEEECTTCEEEECCCCEEECTTCEEEEEEEEEECTTCEEEEEEEEECSCGGGTCCSCSS
T ss_pred             ECcccceEEcCCCCcE-EEEEEEEECCCCEEEecCCCcEecCCCEEEEEEEEEECCCCEEEEEEeeecCcCcCCCCccCC
Confidence            9999999999998765 443          22                99999999999999999999999999999999


Q ss_pred             eEEEEEEEEEcCCEEEEEEeeeeeCCCc-CchhhccCCCcEEEEEEEECCCchhHHHHHHHHHHHHhhhcccCCCCCCCC
Q 038992          146 LYRSTNHIFLEGDQPLFLDSVLLEQGNI-TNIAERMQDYQVIAMVILLGPKLKQIQIQVQENVRRMMSEQLYLPSTGLRP  224 (286)
Q Consensus       146 ~~~s~~~I~~~gg~ll~~D~~~L~~~~~-~~~~~~~~g~~~~gtl~~v~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  224 (286)
                      +|+++++|+++| +|++.|++.|+|+.. ...++.|+||+++|||++++|..+.  +.+++    .+.+.          
T Consensus       157 ~~~~~~~i~~~g-~ll~~d~~~l~~~~~~~~~~~~l~g~~~~gtl~~~~p~~~~--~~lr~----~l~~~----------  219 (265)
T 3sf5_B          157 RLHTKISILQDE-KPIYYDNTILDPKTTDLNNMCMFDGYTHYLNLVLVNCPIEL--SGVRE----CIEES----------  219 (265)
T ss_dssp             EEEEEEEEEETT-EEEEEEEEEECTTTSCTTSTTTTTTCCEEEEEEEESCSCCH--HHHHH----HHHTC----------
T ss_pred             EEEEEEEEEECC-EEEEEEeeEECCCcccccCchhhCCCCEEEEEEEEcCCcCH--HHHHH----Hhhhc----------
Confidence            999999999998 999999999999875 4567889999999999999998875  44444    33211          


Q ss_pred             CCCccCccccCCCceEEEEeeeccCCcEEEEEEccCCHHHHHHHHHHHHHHhhHhh-CC
Q 038992          225 HGKTQSDHFLAKPSFVVSCSAFGPKGIGIVVRIAAMTTESVYRFLQHQLAGMETLL-GV  282 (286)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~s~l~~~~~glvvR~la~~~e~lr~~l~~~~~~lr~~l-G~  282 (286)
                                  +++.+|+|.+  .+++++||+||++++.++++|.++|+.+|+.+ |+
T Consensus       220 ------------~~~~~g~S~l--~~~~lvvR~La~~~~~lr~~l~~i~~~lR~~~~g~  264 (265)
T 3sf5_B          220 ------------EGVDGAVSET--ASSHLCVKALAKGSEPLLHLREKIARLVTQTTTQK  264 (265)
T ss_dssp             ------------TTEEEEEEEC--TTSCEEEEEEESSHHHHHHHHHHHHHHHHCCCTTC
T ss_pred             ------------cCceEEEeec--CCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHhCC
Confidence                        1366889886  35899999999999999999999999999977 75

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00