Citrus Sinensis ID: 039003

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
Protein Sequence
MEPTTKCIELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITSLKFSSKKELYLHLCNPILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSWKPSLKSRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLEMGNQIISANTAYLSCKDKKKHQMECLFYGNRTQRTKSRVIEGDERFARERDDGWMEIELGEFFSGDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRPK
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHccccHHHHHHHHccHHHHHHHccccccccccccccHHHHHHcccccccccHHHHHHHHcccEEEccccEEEEEEcccccEEEEEEcEEEEEEccccccccEEcccccccHHHccEEEEEEEEEEEEEEEccccccccEEEEEEEEEEccccccccccccccEEEEcccEEEEEEEEcccccccccEEEEEEEcccccEEccccccccccccccccccEEEEEEEEEEEccccccEEEEEEEEEEEccccccEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHcccHHHHHHHHHcHHHHHHHcccHHHHHHccccHHHHHHccccccccccHHHHHHHHccccEcccccEEEEEEcccccEEEEEEccEEEEEEccccccEEEcccccccHHHHHHHHHEEEEEEEEEEcccEcccccEEEEEEEEEEcccccccccccEEEEEEEcccEEEEEEEEEccccccccEEEEEEcccccEEcccccccccccccccccccEEEEEEEEEEEcccccccEEEEEEEEEcccccccEEEEEEEEEEcc
Coil and Loop (DISEMBL)
mepttkcielnmlpeDCVSIILSLTSPLDACRATLVSWAFRSAAESNVawekflpsdyqDIVSRSITSLKFSSKKELYLHLCnpilidggrksfkldkssgkksYVLSARELSitwsdrpeywswkpslkSRFLEVAELRMISWLEIEGKIrthmlspnTMYRAYLLINITHrahgldllpsdtflEMGNQIISANTAYLSCKDKKKHQMECLfygnrtqrtksrviegderfarerddgwmeielgeffsgdeegdQEVKMSLREIKGyqlkgglviegievrpk
Flexible Loop (DISEMBL)
MEPTTKCIELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAwekflpsdyQDIVSRSITSLKFSSKKELYLHLCNPILidggrksfkldkssgkksyvlsarelsitwsdrpeywswkpslKSRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLEMGNQIISANTAYLSCKDKKKHQMECLfygnrtqrtksrviegderfarerddgwmeIELGeffsgdeegdQEVKMSLReikgyqlkgglviegievrpk
Low Complexity Region (SEG)
MEPTTKCIELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITSLKFSSKKELYLHLCNPILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSWKPSLKSRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLEMGNQIISANTAYLSCKDKKKHQMECLFYGNRTQRTKSRVIEGDERFARERDDGWMEIELGEFFSGDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRPK
Disordered region (IsUnstruct)
******CIELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITSLKFSSKKELYLHLCNPILIDGGRKSFKL*******SYVLSARELSITWSDRPEYWSWKPSLKSRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLEMGNQIISANTAYLSCKDKKKHQMECLFYGNRTQ******************DGWMEIELGEFF*************LREIKGYQLKGGLVIEGI*****
Disordered Region (DISOPRED)
***********MLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDY******************LYLHLCNPILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSWKPSLKSRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLEMGNQIISANTAYLSCKDKKKHQMECLFYGNRTQ***************ERDDGWMEIELGEFFSGDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRPK
Disordered Region (DISEMBL)
MEPTTKCIELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITSLKFSSKKELYLHLCNPILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSWKPSLKSRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLEMGNQIISANTAYLSCKDKKKHQMECLFYGNRTQRTKSRVIEGDERFARERDDGWMEIELGEFFSGDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRPK
Disordered Region (DISPRO)
*********LNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITSLKFSSKKELYLHLCNPILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSWKPSLKSRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLEMGNQIISANTAYLSCKDKKKHQMECLFYGNRTQRTKSRVIEGDERFARERDDGWMEIELGEFFSGDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRPK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEPTTKCIELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITSLKFSSKKELYLHLCNPILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSWKPSLKSRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLEMGNQIISANTAYLSCKDKKKHQMECLFYGNRTQRTKSRVIEGDERFARERDDGWMEIELGEFFSGDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRPK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	286	2.2.26 [Sep-21-2011]
O80494	289	F-box protein PP2-B15 OS=	yes	no	0.961	0.951	0.573	3e-84
Q9C7J9	284	F-box protein PP2-B13 OS=	no	no	0.954	0.961	0.541	1e-74
Q9C7K0	282	F-box protein VBF OS=Arab	no	no	0.958	0.971	0.542	3e-74
Q3E6P4	320	F-box protein At2g02240 O	no	no	0.891	0.796	0.451	1e-54
Q9ZVQ6	272	F-box protein PP2-B10 OS=	no	no	0.884	0.930	0.410	1e-53
Q9FLU7	251	Putative F-box protein PP	no	no	0.842	0.960	0.409	1e-51
Q6NPT8	336	F-box protein PP2-B1 OS=A	no	no	0.979	0.833	0.353	6e-50
Q9ZVR5	310	Putative F-box protein PP	no	no	0.891	0.822	0.410	9e-48
Q9ZVQ8	305	Putative F-box protein PP	no	no	0.926	0.868	0.390	2e-47
Q949S5	257	F-box protein PP2-B11 OS=	no	no	0.884	0.984	0.395	3e-46

>sp|O80494|P2B15_ARATH F-box protein PP2-B15 OS=Arabidopsis thaliana GN=PP2B15 PE=2 SV=2

 Score =  311 bits (798), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 160/279 (57%), Positives = 196/279 (70%), Gaps = 4/279 (1%)

Query: 12  MLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITSLK- 70
           MLPE CV+ ILS T+P D   +  VS  FR A +S+  WEKFLP+DY  ++SRS    + 
Sbjct: 2   MLPEACVATILSFTTPADTISSAAVSSVFRVAGDSDFVWEKFLPTDYCHVISRSTDPHRI 61

Query: 71  FSSKKELYLHLCNPILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSWKPSLK 130
           FSSKKELY  LC  ILID GRK FK++K SGK SY+LS+R+LSITWSD+  YWSW P   
Sbjct: 62  FSSKKELYRCLCESILIDNGRKIFKIEKLSGKISYILSSRDLSITWSDQRHYWSWSPRSD 121

Query: 131 SRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLEMGN 190
           SRF E  +L M  WLEI GKI+T  LSPNT Y AYL++ +T RA+GLDL+P++T +++GN
Sbjct: 122 SRFSEGVQLIMTDWLEIIGKIQTGALSPNTNYGAYLIMKVTSRAYGLDLVPAETSIKVGN 181

Query: 191 QIISANTAYLSCKDKKKHQMECLFYGNRTQRTKSR-VIEGDERFARERDDGWMEIELGEF 249
                 + YLSC D KK QME +FYG R QR  +  V+    R    RDDGWMEIELGEF
Sbjct: 182 GEKKIKSTYLSCLDNKKQQMERVFYGQREQRMATHEVVRSHRREPEVRDDGWMEIELGEF 241

Query: 250 FSGDEEG--DQEVKMSLREIKGYQLKGGLVIEGIEVRPK 286
            +G  EG  D+EV MSL E+KGYQLKGG+ I+GIEVRPK
Sbjct: 242 ETGSGEGDDDKEVVMSLTEVKGYQLKGGIAIDGIEVRPK 280

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7J9|P2B13_ARATH F-box protein PP2-B13 OS=Arabidopsis thaliana GN=PP2B13 PE=2 SV=1

 Score =  279 bits (714), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 151/279 (54%), Positives = 196/279 (70%), Gaps = 6/279 (2%)

Query: 12  MLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITSLK- 70
           MLPE CV+ IL+ TSP DA  ++ VS  FR A +S+  WEKFLPS Y+ ++S+S    + 
Sbjct: 3   MLPEACVANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSHYKSLISQSTDHHRI 62

Query: 71  FSSKKELYLHLCNPILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSWKPSLK 130
           FSSKKE+Y  LC+ +LID  RK FK++K SGK SY+LSAR++SIT+SD   Y SW     
Sbjct: 63  FSSKKEIYRCLCDSLLIDNARKLFKINKFSGKISYILSARDISITYSDHASYCSWSNVSD 122

Query: 131 SRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLEMGN 190
           SRF E AEL     LEI+GKI+T +LSPNT Y AYL++ +T+ A+GLDL+P++T ++  N
Sbjct: 123 SRFSESAELITTDRLEIKGKIQTTVLSPNTKYGAYLIMKVTNGAYGLDLVPAETSVKSKN 182

Query: 191 QIISANTAYLSCKDKKKHQMECLFYGNRTQRTKSRV----IEGDERFARERDDGWMEIEL 246
              + NT YL C D+KK QM+ LFYGNR +R    V     +G  R  + RDDGW+EIEL
Sbjct: 183 GQNNKNTTYLCCLDEKKQQMKRLFYGNREERMAMTVEAVGGDGKRREPKARDDGWLEIEL 242

Query: 247 GEFFSGDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRP 285
           GEF + + E D EV MSL E+KGYQLKGG+VI+GIEVRP
Sbjct: 243 GEFVTREGE-DDEVNMSLTEVKGYQLKGGIVIDGIEVRP 280

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7K0|VBF_ARATH F-box protein VBF OS=Arabidopsis thaliana GN=VBF PE=1 SV=1

 Score =  278 bits (712), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 152/280 (54%), Positives = 195/280 (69%), Gaps = 6/280 (2%)

Query: 12  MLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITSL-K 70
           MLPE C++ IL+ TSP DA  ++ VS  FR A +S+  WEKFLPSDY+ ++S+S      
Sbjct: 3   MLPEACIANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSDYKSLISQSTDHHWN 62

Query: 71  FSSKKELYLHLCNPILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSWKPSLK 130
            SSKKE+Y  LC+ +LID  RK FK++K SGK SYVLSAR++SIT SD   YWSW     
Sbjct: 63  ISSKKEIYRCLCDSLLIDNARKLFKINKFSGKISYVLSARDISITHSDHASYWSWSNVSD 122

Query: 131 SRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLEMGN 190
           SRF E AEL +   LEIEGKI+T +LS NT Y AYL++ +T  A+GLDL+P++T ++  N
Sbjct: 123 SRFSESAELIITDRLEIEGKIQTRVLSANTRYGAYLIVKVTKGAYGLDLVPAETSIKSKN 182

Query: 191 QIISANTAYLSCKDKKKHQMECLFYGNRTQRTKSRV----IEGDERFARERDDGWMEIEL 246
             IS +  YL C D+KK QM+ LFYGNR +R    V     +G  R  + RDDGWMEIEL
Sbjct: 183 GQISKSATYLCCLDEKKQQMKRLFYGNREERMAMTVEAVGGDGKRREPKCRDDGWMEIEL 242

Query: 247 GEFFSGDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRPK 286
           GEF + + E D EV M+L E+KGYQLKGG++I+GIEVRPK
Sbjct: 243 GEFETREGE-DDEVNMTLTEVKGYQLKGGILIDGIEVRPK 281

Component of SCF(VBF) E3 ubiquitin ligase complexes, which mediate the ubiquitination and subsequent proteasomal degradation of target proteins such as VIP1 and Agrobacterium virE2, after their implication in T-DNA translocation to the host nucleus (can functionally replace Agrobacterium VirF). Required during Agrobacterium-induced tumor formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E6P4|FB95_ARATH F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1

 Score =  213 bits (542), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 125/277 (45%), Positives = 163/277 (58%), Gaps = 22/277 (7%)

Query: 10  LNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITSL 69
            ++LPEDC+S I+S TSP DAC A  VS  F SA  S+  W+KFLP +Y+ +VSRS    
Sbjct: 61  FDVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSRSRV-- 118

Query: 70  KFSSKKELYLHLC-NPILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSWKPS 128
            F+SKKELY  LC NP+LI+ G+KSF L+K+SGK+  +LS++EL ITW   PEYW W   
Sbjct: 119 -FASKKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWISI 177

Query: 129 LKSRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLEM 188
            +SRF ++AEL  + W EI GK    +LSP T Y AY++     R  GL  LP +  L +
Sbjct: 178 PESRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFKTKDRCPGLGHLPVEVGLGL 237

Query: 189 GNQIISANTAYLSCKDKKKHQMECLFYGNRTQRTKSRVIEGDERFARERDDGWMEIELGE 248
             Q  S    Y              F G R +R +      D     +R+DGWME ELGE
Sbjct: 238 VGQESSKRFIY--------------FIGPRDRRGRRETR--DVTKPDQREDGWMEAELGE 281

Query: 249 FFSGDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRP 285
           FF  +EE   E++ S+ EIK    K GL+I+GIE RP
Sbjct: 282 FF--NEERCDEIEFSVIEIKSPSWKSGLIIQGIEFRP 316

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVQ6|P2B10_ARATH F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1

 Score =  210 bits (534), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 114/278 (41%), Positives = 162/278 (58%), Gaps = 25/278 (8%)

Query: 10  LNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITSL 69
            +  PEDC+S I+S T+P DAC A  VS  F S  +S++ WEKFLP+DY+ ++     S 
Sbjct: 14  FDSFPEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIP---PSR 70

Query: 70  KFSSKKELYLHLCN-PILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSWKPS 128
            FSSKKELY  LCN P+L D  +KS  L+K+SGK+  +LSA  LSI W D P+YW W P 
Sbjct: 71  VFSSKKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPI 130

Query: 129 LKSRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLEM 188
            +SRF +VA+LR + W EI G+  T +LSP T Y AY++     + +G            
Sbjct: 131 PESRFEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAYIVFKGVDKCYGF----------- 179

Query: 189 GNQIISANTAYLSCKDKKKHQMECLFYGNRTQRTKSRVIEGDERFARERDDGWMEIELGE 248
             Q ++   A      +   ++ C  +    +R +  V++      ++R+DGWMEIELGE
Sbjct: 180 --QNVAIEAAVGVVGQEPSRRLIC--FSEAIRRGRRNVVK-----PKQREDGWMEIELGE 230

Query: 249 FFS-GDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRP 285
           FF+ G    + E++MS  E K    K GL+I+GIE+RP
Sbjct: 231 FFNDGGIMDNDEIEMSALETKQLNRKCGLIIQGIEIRP 268

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLU7|P2B12_ARATH Putative F-box protein PP2-B12 OS=Arabidopsis thaliana GN=PP2B12 PE=4 SV=1

 Score =  203 bits (516), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 113/276 (40%), Positives = 160/276 (57%), Gaps = 35/276 (12%)

Query: 13  LPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITSLKFS 72
           LPE+C++ ++S TSP DACR + VS   RSAA+SN  WE+FLPSDY+  +  S++     
Sbjct: 6   LPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYIDNSLSRF--- 62

Query: 73  SKKELYLHLC-NPILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSWKPSLKS 131
           S K+L+L  C +P+LI+ GR SF ++K SGKK ++LSAR+L I W D PE+W W     S
Sbjct: 63  SNKQLFLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWVSIPDS 122

Query: 132 RFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHR-AHGLDLLPSDTFLEMGN 190
           RF EVA L M+ W EI GKI T +LS  T Y AYL+       + G + LP         
Sbjct: 123 RFEEVAGLLMVCWFEIRGKISTSLLSKATNYSAYLVFKEQEMGSFGFESLP--------- 173

Query: 191 QIISANTAYLSCKDKKKHQMECLFYGNRTQRTKSRVIEGDERFARERDDGWMEIELGEFF 250
                              +E  F   RT+   +R +         R+DGW+EIELGE++
Sbjct: 174 -------------------LEVSFRSTRTEVYNNRRVFLKSGTQESREDGWLEIELGEYY 214

Query: 251 SGDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRPK 286
            G +  D+E++MS+ E +    KGG++++GIE+RPK
Sbjct: 215 VGFD--DEEIEMSVLETREGGWKGGIIVQGIEIRPK 248

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NPT8|PP2B1_ARATH F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP2B1 PE=1 SV=1

 Score =  197 bits (502), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 110/311 (35%), Positives = 173/311 (55%), Gaps = 31/311 (9%)

Query: 4   TTKCIELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVS 63
            T+    + LPEDC+S ++S TSP DAC    VS + +SAA+S++ WE FLPS+Y  +V 
Sbjct: 26  VTRASRFDALPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYSSLVL 85

Query: 64  RSITSLKFSSKKELYLHLC-NPILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEY 122
           +S   L   SKKE++L L  N +L++ G+KSF ++K+SGKK Y+LSA EL+I W D P Y
Sbjct: 86  QSANHL---SKKEIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAY 142

Query: 123 WSWKPSLKSRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITH-RAHGLDLLP 181
           W W    +S+F +VAELR + W E+ GKI   MLS  T Y  Y++    + R++G DL+P
Sbjct: 143 WKWITVPESKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVYVVFKTANGRSYGFDLVP 202

Query: 182 SDTFLEMGNQIISANTAYLSCKDKKKHQMECLFYG------NRTQRTKSRVIEGDERFA- 234
            +  +    ++ +  + Y    +         + G      +R  R +   ++       
Sbjct: 203 VEAGVGFVGKVATKKSVYFESGNADSRSATSHYSGISYAMVSRAFRMRRPWMQVQREEEE 262

Query: 235 ---------------RERDDGWMEIELGEFFSGD----EEGDQEVKMSLREIKGYQLKGG 275
                          +ER DGW E+ELG+F+  +    ++G  E+++S+ E +    K G
Sbjct: 263 EVEGERERGMNVVGPKERVDGWSEVELGKFYINNGGCGDDGSDEIEISIMETQNGNWKSG 322

Query: 276 LVIEGIEVRPK 286
           L+I+GIE+RP+
Sbjct: 323 LIIQGIEIRPE 333

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVR5|PP2B2_ARATH Putative F-box protein PP2-B2 OS=Arabidopsis thaliana GN=PP2B2 PE=4 SV=2

 Score =  190 bits (483), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 114/278 (41%), Positives = 152/278 (54%), Gaps = 23/278 (8%)

Query: 10  LNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITSL 69
            + LPEDC+S I+S TSP DAC A  VS  F SA  S+  W+KFLPSDY  +V  S    
Sbjct: 47  FDNLPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPPSRV-- 104

Query: 70  KFSSKKELYLHLC-NPILIDGGRKSFKLDKSSGKKSYVLSARE-LSITWSDRPEYWSWKP 127
            FSSKKELY  +C NP+L++ G KSF L+K +GKK ++LS ++ + ITW   P+YW W  
Sbjct: 105 -FSSKKELYFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWRWIS 163

Query: 128 SLKSRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLE 187
             ++RF EV EL  + W E+ G + T  LSP T Y AY++    +    L  +P      
Sbjct: 164 IPEARFEEVPELLNVCWFEVRGGMNTKELSPGTRYSAYIVFKTKNGCPNLGDVP------ 217

Query: 188 MGNQIISANTAYLSCKDKKKHQMECLFYGNRTQRTKSRVIEGDERFARERDDGWMEIELG 247
                + A    +  +  ++H     F G   QR        D     +R DGWME ELG
Sbjct: 218 -----VEATVGLVGQESSQRH---IYFVGPSDQRRDRET--RDVTRPTKRKDGWMEAELG 267

Query: 248 EFFSGDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRP 285
           +FF  +E G   V  S+ EIK    K GL+I+GIE RP
Sbjct: 268 QFF--NESGCDVVDTSILEIKTPYWKRGLIIQGIEFRP 303

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVQ8|PP2B8_ARATH Putative F-box protein PP2-B8 OS=Arabidopsis thaliana GN=PP2B8 PE=4 SV=1

 Score =  189 bits (481), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 109/279 (39%), Positives = 167/279 (59%), Gaps = 14/279 (5%)

Query: 9   ELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITS 68
           EL+ LPE+CVSII+S TSP DAC    VS  F SA +S++ WEKF+P +Y+ ++S+S  +
Sbjct: 35  ELDDLPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQS-RA 93

Query: 69  LKFSSKKELYLHLCN-PILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSWKP 127
            KF SKKELY  LC+  +LID G+KS  ++K++ K+  ++SA  L+I W + P+ W W P
Sbjct: 94  FKFLSKKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIP 153

Query: 128 SLKSRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLE 187
             ++RF  VAEL  +   EI G+I + ++SP T Y AY++    +  +G + +  +  + 
Sbjct: 154 DPQARFETVAELLEVCLFEIRGRINSRVISPKTRYSAYIVYKKLNICYGFENVAVEVVVG 213

Query: 188 MGNQIISANTAYLSCKDKKKHQMECLFYGNRTQRTKSRVIEGDERFARERDDGWMEIELG 247
           +  Q +  +     C D+    M+  F     +R + + +   ER    R DGWMEI++G
Sbjct: 214 VVGQDLEESCRRYICFDE---TMDEQF----RRRDRGKNLVKPER----RKDGWMEIKIG 262

Query: 248 EFFS-GDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRP 285
           EFF+ G    D E++M   E K    K GL+I+GIE+RP
Sbjct: 263 EFFNEGGLLNDDEIEMVALEAKQRHWKRGLIIQGIEIRP 301

Arabidopsis thaliana (taxid: 3702)

>sp|Q949S5|P2B11_ARATH F-box protein PP2-B11 OS=Arabidopsis thaliana GN=PP2B11 PE=1 SV=1

 Score =  185 bits (469), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 110/278 (39%), Positives = 155/278 (55%), Gaps = 25/278 (8%)

Query: 10  LNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITSL 69
           +N LPEDC++ ILSLT+PLD CR + VS  FRSAA S+  W  FLP+D+    +      
Sbjct: 1   MNNLPEDCIAKILSLTTPLDVCRLSAVSSIFRSAAGSDDVWNHFLPADFP---AGFAAPA 57

Query: 70  KFSSKKELYLHLC-NPILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSWKPS 128
              ++K+L+  L  NP+LI+G   SF L++ SG K Y+++AR L+I W     YW W   
Sbjct: 58  GLPTRKQLFFSLVDNPLLINGTLLSFSLERKSGNKCYMMAARALNIVWGHEQRYWHWISL 117

Query: 129 LKSRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLEM 188
             +RF EVAEL M+ WLEI GKI   +LS +T+Y AY +    H  +G    P +T L +
Sbjct: 118 PNTRFGEVAELIMVWWLEITGKINITLLSDDTLYAAYFVFKWNHSPYGFR-QPVETSLVL 176

Query: 189 GNQIISANTAYLSCKDKKKHQMECLFYGNRTQRTKSRVIEGDERFARERDDGWMEIELGE 248
            +   + N          +  M  L   +  +  +S V+         R DGW E+ELG+
Sbjct: 177 ADTESTDNVV--------QPSMISLMQDSGGEEGQSPVL---------RRDGWYEVELGQ 219

Query: 249 FFSGDEEGD-QEVKMSLREIKGYQLKGGLVIEGIEVRP 285
           FF     GD  E++MSL+E KG   K GL++ GIE+RP
Sbjct: 220 FFK--RRGDLGEIEMSLKETKGPYEKKGLIVYGIEIRP 255

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
225450747	285	PREDICTED: F-box protein PP2-B15 [Vitis	0.975	0.978	0.659	1e-102
224102167	287	predicted protein [Populus trichocarpa]	0.965	0.961	0.639	4e-99
225450745	301	PREDICTED: F-box protein PP2-B15-like [V	0.972	0.923	0.643	5e-97
147839229	288	hypothetical protein VITISV_022467 [Viti	0.972	0.965	0.639	2e-96
224123016	287	predicted protein [Populus trichocarpa]	0.993	0.989	0.635	8e-95
255542810	283	conserved hypothetical protein [Ricinus	0.968	0.978	0.607	2e-94
296089714	694	unnamed protein product [Vitis vinifera]	0.881	0.363	0.601	2e-89
356572952	287	PREDICTED: F-box protein PP2-B15-like [G	0.944	0.940	0.605	2e-89
255576790	272	conserved hypothetical protein [Ricinus	0.951	1.0	0.607	2e-88
356505799	284	PREDICTED: F-box protein PP2-B15-like [G	0.944	0.950	0.594	3e-87

>gi|225450747|ref|XP_002279245.1| PREDICTED: F-box protein PP2-B15 [Vitis vinifera]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/282 (65%), Positives = 226/282 (80%), Gaps = 3/282 (1%)

Query: 6   KCIELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRS 65
           +C+  N LPE CVSIILSLTSP DAC+++LVS  FR+AAES+V WE+FLP+DY DI+ R 
Sbjct: 2   ECLGFNKLPEGCVSIILSLTSPPDACKSSLVSPMFRAAAESDVVWERFLPADYHDILCRL 61

Query: 66  ITSLKFSSKKELYLHLCNPILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSW 125
           +  L  SS+KEL+L LC+PILIDGG KSF+LDK SGKKSY+LSARELSITWS+ P YWSW
Sbjct: 62  VEPLVCSSRKELFLRLCDPILIDGGSKSFRLDKWSGKKSYLLSARELSITWSNDPMYWSW 121

Query: 126 KPSLKSRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTF 185
           + + +SRF  VAELR + WLEI GKIRT MLSPNT Y AYL++ I++RA+GLDL+PS+  
Sbjct: 122 RSTPESRFSHVAELRTMCWLEIHGKIRTQMLSPNTKYGAYLIMKISNRAYGLDLMPSEIS 181

Query: 186 LEMGNQIISAN-TAYLSCKDKKKHQMECLFYGNRTQRTKSRVIEGDERFARERDDGWMEI 244
           +E+ N     N TAYL C D K  QME LFYGNR +  +SRVIEGD R   ER+DGWME+
Sbjct: 182 VEVSNSTQVCNGTAYLRCSDSKNKQMERLFYGNRREMLRSRVIEGDGRVPCEREDGWMEL 241

Query: 245 ELGEFFSGDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRPK 286
           ELG+FF+G  EGD+EV+MSLRE+KGY LKGGL+IEGIEVRPK
Sbjct: 242 ELGDFFNG--EGDEEVRMSLREVKGYHLKGGLIIEGIEVRPK 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102167|ref|XP_002334203.1| predicted protein [Populus trichocarpa] gi|222870034|gb|EEF07165.1| predicted protein [Populus trichocarpa]

 Score =  367 bits (941), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 179/280 (63%), Positives = 222/280 (79%), Gaps = 4/280 (1%)

Query: 9   ELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITS 68
           +  +LPE CVS ILS TSP DAC+++LVS  F+SAA+S++ WE+FLP+DYQDIVS+S   
Sbjct: 9   QFKILPEGCVSTILSFTSPQDACKSSLVSTIFQSAADSDIVWERFLPTDYQDIVSKSNFP 68

Query: 69  LKFSSKKELYLHLCNPILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSWKPS 128
            KFSSKKEL+L LCN +LIDGGRKSF+++KSSGKKS++LSAR+L ITWS+ P+YW W   
Sbjct: 69  FKFSSKKELFLQLCNSLLIDGGRKSFRIEKSSGKKSFILSARDLHITWSNEPQYWHWASL 128

Query: 129 LKSRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLEM 188
            +SRF EVA LR + WLEI GKI T MLSPNT Y AYL++ I+ R++GLD +PS+  +E+
Sbjct: 129 PESRFSEVAVLRTMCWLEIVGKIETQMLSPNTKYGAYLILKISERSYGLDSMPSEISVEV 188

Query: 189 GNQIISANTAY--LSCKDKKKHQMECLFYGNRTQRTKSRVIEGDERFARERDDGWMEIEL 246
           GN   S  TAY  L+ +  +K QME LFYGNRT+R KSRV EGD R A ER+DGW+EIEL
Sbjct: 189 GNNQGSTTTAYLRLAQEHARKQQMERLFYGNRTERLKSRVAEGDGRVASEREDGWLEIEL 248

Query: 247 GEFFSGDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRPK 286
           GEFFSG  E D+EVKMSL E+KG+ LKGGL+IEGIEVRPK
Sbjct: 249 GEFFSG--ENDEEVKMSLMEVKGHHLKGGLIIEGIEVRPK 286

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450745|ref|XP_002283524.1| PREDICTED: F-box protein PP2-B15-like [Vitis vinifera]

 Score =  360 bits (923), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 182/283 (64%), Positives = 218/283 (77%), Gaps = 5/283 (1%)

Query: 7   CIELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSI 66
           C+ LN LPE CVS ILSLTSP DAC+++LVS  FR+AAES+V WE+FLP+DY DI+SR  
Sbjct: 17  CVGLNTLPEGCVSTILSLTSPPDACKSSLVSSIFRAAAESDVVWERFLPADYHDILSRLA 76

Query: 67  TSLKFSSKKELYLHLCNPILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSWK 126
             L  SSKKEL+L LC+P LIDGG+K F+LDK SGK SY++SARELSI+WS  P +WSW 
Sbjct: 77  EPLVVSSKKELFLRLCDPSLIDGGKKRFRLDKWSGKNSYMMSARELSISWSHDPTHWSWT 136

Query: 127 PSLKSRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFL 186
              +SRF EVAEL+ +  LEI GKIRT MLSPNT Y AYL+I I++RA GLDL+PS+  +
Sbjct: 137 SIPESRFSEVAELKTVCRLEIHGKIRTQMLSPNTKYGAYLIIKISNRAFGLDLMPSEISV 196

Query: 187 EMGNQIISAN-TAYLSCKDKKKHQMECLFYGNRTQRTKSRVIEGDERFARER--DDGWME 243
           E+ N     N TAYL C D K  QME LFYGNR +  +SRVIEGD R   ER   DGWME
Sbjct: 197 EVSNSTQVCNGTAYLRCSDSKNKQMERLFYGNRGEMLRSRVIEGDGRVPCERRDGDGWME 256

Query: 244 IELGEFFSGDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRPK 286
           +ELG+FF+G  EGD+EV+MSLRE+KGY LKGGL+IEGIEVRPK
Sbjct: 257 LELGDFFNG--EGDEEVRMSLREVKGYHLKGGLIIEGIEVRPK 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147839229|emb|CAN65691.1| hypothetical protein VITISV_022467 [Vitis vinifera]

 Score =  357 bits (917), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 181/283 (63%), Positives = 217/283 (76%), Gaps = 5/283 (1%)

Query: 7   CIELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSI 66
           C+  N LPE CVS ILSLTSP DAC+++LVS  FR+AAES+V WE+FLP+DY DI+SR  
Sbjct: 4   CVGFNTLPEGCVSTILSLTSPPDACKSSLVSSIFRAAAESDVVWERFLPADYHDILSRLA 63

Query: 67  TSLKFSSKKELYLHLCNPILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSWK 126
             L  SSKKEL+L LC+P LIDGG+K F+LDK +GK SY++SARELSI+WS  P +WSW 
Sbjct: 64  EPLVVSSKKELFLRLCDPSLIDGGKKRFRLDKWTGKNSYMMSARELSISWSHDPTHWSWT 123

Query: 127 PSLKSRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFL 186
              +SRF EVAEL+ +  LEI GKIRT MLSPNT Y AYL+I I++RA GLDL+PS+  +
Sbjct: 124 SIPESRFSEVAELKTVCRLEIHGKIRTQMLSPNTKYGAYLIIKISNRAFGLDLMPSEISV 183

Query: 187 EMGNQIISAN-TAYLSCKDKKKHQMECLFYGNRTQRTKSRVIEGDERFARER--DDGWME 243
           E+ N     N TAYL C D K  QME LFYGNR +  +SRVIEGD R   ER   DGWME
Sbjct: 184 EVSNSTQVCNGTAYLRCIDSKNKQMERLFYGNRGEMLRSRVIEGDGRVPCERRDGDGWME 243

Query: 244 IELGEFFSGDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRPK 286
           +ELG+FF+G  EGD+EVKMSLRE+KGY LKGGL+IEGIEVRPK
Sbjct: 244 LELGDFFNG--EGDEEVKMSLREVKGYHLKGGLIIEGIEVRPK 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123016|ref|XP_002318973.1| predicted protein [Populus trichocarpa] gi|222857349|gb|EEE94896.1| predicted protein [Populus trichocarpa]

 Score =  352 bits (904), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 183/288 (63%), Positives = 225/288 (78%), Gaps = 4/288 (1%)

Query: 1   MEPTTKCIELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQD 60
           ME  T   E N+LPE CVS ILS TSP DAC+++LVS  F++AA+S+V WE+FLP+DYQD
Sbjct: 1   MEGLTDRHEFNILPEGCVSTILSFTSPQDACKSSLVSTIFQAAADSDVVWERFLPTDYQD 60

Query: 61  IVSRSITSLKFSSKKELYLHLCNPILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRP 120
           IVSRS+   KFSSKKEL+L LCN +LIDGG+KSFKL++SSGKKS++LSAR+L ITWSD  
Sbjct: 61  IVSRSMVPFKFSSKKELFLLLCNSLLIDGGKKSFKLERSSGKKSFMLSARDLHITWSDES 120

Query: 121 EYWSWKPSLKSRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLL 180
            YW W    +SRF EVA LR + WLEI G I+T ML+PNT Y AYL++ IT R++GLDL+
Sbjct: 121 PYWHWASLPESRFSEVAVLRTMCWLEIVGMIKTQMLTPNTKYGAYLVLKITDRSYGLDLM 180

Query: 181 PSDTFLEMGNQIISANTAY--LSCKDKKKHQMECLFYGNRTQRTKSRVIEGDERFARERD 238
           PS+  +E+GN  +S NTAY  L+ +  +K QME LFYGNR Q  KSRV EG+ R   ERD
Sbjct: 181 PSEISVEVGNNQVSRNTAYLRLAKEHARKKQMESLFYGNRMQVLKSRVAEGEGRVPSERD 240

Query: 239 DGWMEIELGEFFSGDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRPK 286
           DGW+EIELGEFFSG  E D+EVKMSL E+KG+ LKGGL+IEGIE+RPK
Sbjct: 241 DGWLEIELGEFFSG--ENDEEVKMSLMEVKGHHLKGGLIIEGIEIRPK 286

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542810|ref|XP_002512468.1| conserved hypothetical protein [Ricinus communis] gi|223548429|gb|EEF49920.1| conserved hypothetical protein [Ricinus communis]

 Score =  351 bits (900), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 170/280 (60%), Positives = 221/280 (78%), Gaps = 3/280 (1%)

Query: 8   IELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSIT 67
           +E   LPE C+S +LS TSPL  C+++LVS +F+SAA+S++ WE FLP DY DI+SRSIT
Sbjct: 1   MEFTSLPEGCLSTVLSFTSPLHVCKSSLVSTSFQSAADSDIVWESFLPCDYPDIISRSIT 60

Query: 68  SLKFSSKKELYLHLCNPILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSWKP 127
            LKFSSKKEL++ LC+PI +DGGRK+FKL+KS+G+KSY+LSAR+LSITWS++  YW+W  
Sbjct: 61  PLKFSSKKELFICLCDPIFLDGGRKNFKLEKSTGRKSYILSARDLSITWSNQAMYWNWVS 120

Query: 128 SLKSRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLE 187
             +S F EVA LR + WLEI+GKI+T MLSPNT Y AYL++ I+ RA+GLDL+P +  +E
Sbjct: 121 LPESSFFEVAILRTVCWLEIQGKIKTQMLSPNTQYGAYLILKISDRAYGLDLIPCEVSIE 180

Query: 188 MGNQIISANTAYL-SCKDKKKHQMECLFYGNRTQRTKSRVIEGDERFARERDDGWMEIEL 246
           + N ++S++TAYL   +  KK QME LF+ NRT   KSRV+EGD R    R+DGW+EIEL
Sbjct: 181 VDN-LLSSSTAYLRHGQYSKKQQMEHLFFANRTHMLKSRVVEGDARVPSGREDGWLEIEL 239

Query: 247 GEFFSGDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRPK 286
           GEFF  + E D+EVKMSL+E+KG  LKGGL+IEGIEVRPK
Sbjct: 240 GEFFV-NGESDEEVKMSLKEVKGQHLKGGLIIEGIEVRPK 278

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089714|emb|CBI39533.3| unnamed protein product [Vitis vinifera]

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 169/281 (60%), Positives = 209/281 (74%), Gaps = 29/281 (10%)

Query: 6   KCIELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRS 65
           +C+  N LPE CVSIILSLTSP DAC+++LVS  FR+AAES+V WE+FLP+DY DI+ R 
Sbjct: 2   ECLGFNKLPEGCVSIILSLTSPPDACKSSLVSPMFRAAAESDVVWERFLPADYHDILCRL 61

Query: 66  ITSLKFSSKKELYLHLCNPILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSW 125
           +  L  SS+KEL+L LC+PILIDGG KSF+LDK SGKKSY+LSARELSITWS+ P YWSW
Sbjct: 62  VEPLVCSSRKELFLRLCDPILIDGGSKSFRLDKWSGKKSYLLSARELSITWSNDPMYWSW 121

Query: 126 KPSLKSRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTF 185
           + + +SRF  VAELR + WLEI GKIRT MLSPNT Y AYL++ I++RA+GLDL+PS+  
Sbjct: 122 RSTPESRFSHVAELRTMCWLEIHGKIRTQMLSPNTKYGAYLIMKISNRAYGLDLMPSEIS 181

Query: 186 LEMGNQIISANTAYLSCKDKKKHQMECLFYGNRTQRTKSRVIEGDERFARERDDGWMEIE 245
           +E+ N                            TQ  +SRVIEGD R   ER+DGWME+E
Sbjct: 182 VEVSNS---------------------------TQMLRSRVIEGDGRVPCEREDGWMELE 214

Query: 246 LGEFFSGDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRPK 286
           LG+FF+G  EGD+EV+MSLRE+KGY LKGGL+IEGIEVR +
Sbjct: 215 LGDFFNG--EGDEEVRMSLREVKGYHLKGGLIIEGIEVRQR 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572952|ref|XP_003554629.1| PREDICTED: F-box protein PP2-B15-like [Glycine max]

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 167/276 (60%), Positives = 209/276 (75%), Gaps = 6/276 (2%)

Query: 13  LPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSIT--SLK 70
           LP DCVS ILS TSPL AC  +LVS +  S A S+  W  FLPSDY+DIVSR++   +L 
Sbjct: 14  LPHDCVSEILSHTSPLVACIVSLVSPSLCSCANSDTVWRSFLPSDYEDIVSRAVNPFTLS 73

Query: 71  FSSKKELYLHLCNPILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSWKPSLK 130
           FSS K+L+  LC+P+LID G KSF L+KSSGKKSY++SARELSI WS  P  WSWKP  +
Sbjct: 74  FSSYKQLFYSLCHPLLIDQGNKSFNLEKSSGKKSYIISARELSIAWSSDPMMWSWKPIPE 133

Query: 131 SRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLEMGN 190
           SRF E AELR +SWLE+EGKIRT +L+PNT Y AYL++N++HRA+GLD  PS+  + +GN
Sbjct: 134 SRFAEAAELRTVSWLEVEGKIRTRILTPNTSYLAYLIMNVSHRAYGLDFAPSEVSVMVGN 193

Query: 191 QIISANTAYLSCKDKKKHQMECLFYGNRTQRTKSRVIEGDERFARERDDGWMEIELGEFF 250
           + +    AYL  KD+ K +ME LFYGNRT+  ++   +    F  +R+DGWMEIELGEFF
Sbjct: 194 K-VHRGKAYLGDKDENKREMEALFYGNRTEVLRNAAFQEGIPFPSKREDGWMEIELGEFF 252

Query: 251 SGDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRPK 286
           SG  EGD+E+KMSLRE+ GYQLKGGLV+EGI+VRPK
Sbjct: 253 SG--EGDEEIKMSLREV-GYQLKGGLVLEGIQVRPK 285

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576790|ref|XP_002529282.1| conserved hypothetical protein [Ricinus communis] gi|223531271|gb|EEF33114.1| conserved hypothetical protein [Ricinus communis]

 Score =  331 bits (849), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 167/275 (60%), Positives = 205/275 (74%), Gaps = 3/275 (1%)

Query: 12  MLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITSLKF 71
           MLPE  VS ILS TSP+D CR+++VS +FRSA ES+  WE+FLPSDY +I+SR +T   F
Sbjct: 1   MLPEGVVSTILSFTSPVDGCRSSVVSTSFRSAMESDAVWERFLPSDYHEILSRLLTPFTF 60

Query: 72  SSKKELYLHLCNPILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSWKPSLKS 131
           SSKKEL+L LCNP+LID G+KSFKL+KSSGKKSY+LSAREL I WSD P YW W P+ +S
Sbjct: 61  SSKKELFLRLCNPLLIDSGKKSFKLEKSSGKKSYILSARELFIAWSDVPTYWCWIPTTES 120

Query: 132 RFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLEMGNQ 191
           RF EVA LRM SWLEI GKIRT MLSPNT Y AYL++ I+ RA+GLD +PS+  +E+GNQ
Sbjct: 121 RFSEVAVLRMTSWLEIRGKIRTQMLSPNTKYGAYLIMKISDRAYGLDSMPSEISVEVGNQ 180

Query: 192 IISANTAYLSCKDKKKHQMECLFYGNRTQRTKSRVIEGDERFARERDDGWMEIELGEFFS 251
            +S++  +L  K  K+    CL   +  Q  + R  +      ++R+D W EIELGEFFS
Sbjct: 181 -VSSSITHLRSKPDKRRPSSCLDDTHYVQMPQKRFKDAHGPMPKQRNDAWDEIELGEFFS 239

Query: 252 GDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRPK 286
           G    D+EVKMSL E+KG QLKGGLVIEGIEVRPK
Sbjct: 240 GG--FDEEVKMSLIEVKGCQLKGGLVIEGIEVRPK 272

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505799|ref|XP_003521677.1| PREDICTED: F-box protein PP2-B15-like [Glycine max]

 Score =  327 bits (838), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 164/276 (59%), Positives = 205/276 (74%), Gaps = 6/276 (2%)

Query: 13  LPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITS--LK 70
           LP DCVS ILS TSPL+AC  +LVS   RS A S+  W  FLPSDY+DIVS ++    L 
Sbjct: 12  LPHDCVSEILSHTSPLEACMVSLVSPTLRSCANSDTVWRSFLPSDYEDIVSSAVNPFILS 71

Query: 71  FSSKKELYLHLCNPILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSWKPSLK 130
           FSS K+L+  LC+P+LID G KSFKL+KSSGKKSY++SARELSI WS  P  WSWKP  +
Sbjct: 72  FSSYKQLFHALCHPLLIDQGNKSFKLEKSSGKKSYIISARELSIAWSSDPMMWSWKPIPE 131

Query: 131 SRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLEMGN 190
           SRF E AELR +SWLEIEGKIRT +L+PNT Y AYL++N++HRA+GLD  PS+  + +G 
Sbjct: 132 SRFPEAAELRTVSWLEIEGKIRTRILTPNTSYSAYLIMNVSHRAYGLDFAPSEVSVTVGK 191

Query: 191 QIISANTAYLSCKDKKKHQMECLFYGNRTQRTKSRVIEGDERFARERDDGWMEIELGEFF 250
             +    AYL  KD+ K +ME LFYGNRT+  ++   +       +R+DGWMEIELGEFF
Sbjct: 192 N-VRRGKAYLGHKDENKRKMETLFYGNRTEVLRNAAFDEGIASPSKREDGWMEIELGEFF 250

Query: 251 SGDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRPK 286
           +G  EGD+E+KM LRE+ GYQLKGGLV+EGI++RPK
Sbjct: 251 NG--EGDEEIKMCLREV-GYQLKGGLVLEGIQLRPK 283

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
TAIR|locus:505006110	289	PP2-B15 "phloem protein 2-B15"	0.961	0.951	0.573	4.2e-79
TAIR|locus:2011791	282	PP2-B14 "phloem protein 2-B14"	0.958	0.971	0.546	2e-72
TAIR|locus:2011806	284	PP2-B13 "phloem protein 2-B13"	0.954	0.961	0.544	1.1e-71
TAIR|locus:2153954	251	PP2-B12 "phloem protein 2-B12"	0.646	0.737	0.450	2.6e-53
TAIR|locus:2056231	272	PP2-B10 "phloem protein 2-B10"	0.559	0.588	0.493	3.3e-53
TAIR|locus:2056196	310	PP2-B2 "phloem protein 2-B2" [	0.643	0.593	0.439	2.9e-48
TAIR|locus:2056201	305	PP2-B8 "phloem protein 2-B8" [	0.926	0.868	0.401	7.7e-48
TAIR|locus:2056181	320	MEE66 "AT2G02240" [Arabidopsis	0.772	0.690	0.452	8.8e-47
TAIR|locus:2016349	257	PP2-B11 "phloem protein 2-B11"	0.618	0.688	0.428	6e-46
TAIR|locus:2056166	307	PP2-B6 "phloem protein 2-B6" [	0.891	0.830	0.387	1.4e-41

TAIR|locus:505006110 PP2-B15 "phloem protein 2-B15" [Arabidopsis thaliana (taxid:3702)]

 Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
 Identities = 160/279 (57%), Positives = 196/279 (70%)

Query:    12 MLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITSLK- 70
             MLPE CV+ ILS T+P D   +  VS  FR A +S+  WEKFLP+DY  ++SRS    + 
Sbjct:     2 MLPEACVATILSFTTPADTISSAAVSSVFRVAGDSDFVWEKFLPTDYCHVISRSTDPHRI 61

Query:    71 FSSKKELYLHLCNPILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSWKPSLK 130
             FSSKKELY  LC  ILID GRK FK++K SGK SY+LS+R+LSITWSD+  YWSW P   
Sbjct:    62 FSSKKELYRCLCESILIDNGRKIFKIEKLSGKISYILSSRDLSITWSDQRHYWSWSPRSD 121

Query:   131 SRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLEMGN 190
             SRF E  +L M  WLEI GKI+T  LSPNT Y AYL++ +T RA+GLDL+P++T +++GN
Sbjct:   122 SRFSEGVQLIMTDWLEIIGKIQTGALSPNTNYGAYLIMKVTSRAYGLDLVPAETSIKVGN 181

Query:   191 QIISANTAYLSCKDKKKHQMECLFYGNRTQRTKSR-VIEGDERFARERDDGWMEIELGEF 249
                   + YLSC D KK QME +FYG R QR  +  V+    R    RDDGWMEIELGEF
Sbjct:   182 GEKKIKSTYLSCLDNKKQQMERVFYGQREQRMATHEVVRSHRREPEVRDDGWMEIELGEF 241

Query:   250 FSGDEEGD--QEVKMSLREIKGYQLKGGLVIEGIEVRPK 286
              +G  EGD  +EV MSL E+KGYQLKGG+ I+GIEVRPK
Sbjct:   242 ETGSGEGDDDKEVVMSLTEVKGYQLKGGIAIDGIEVRPK 280

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2011791 PP2-B14 "phloem protein 2-B14" [Arabidopsis thaliana (taxid:3702)]

 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 153/280 (54%), Positives = 196/280 (70%)

Query:    12 MLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITS-LK 70
             MLPE C++ IL+ TSP DA  ++ VS  FR A +S+  WEKFLPSDY+ ++S+S      
Sbjct:     3 MLPEACIANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSDYKSLISQSTDHHWN 62

Query:    71 FSSKKELYLHLCNPILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSWKPSLK 130
              SSKKE+Y  LC+ +LID  RK FK++K SGK SYVLSAR++SIT SD   YWSW     
Sbjct:    63 ISSKKEIYRCLCDSLLIDNARKLFKINKFSGKISYVLSARDISITHSDHASYWSWSNVSD 122

Query:   131 SRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLEMGN 190
             SRF E AEL +   LEIEGKI+T +LS NT Y AYL++ +T  A+GLDL+P++T ++  N
Sbjct:   123 SRFSESAELIITDRLEIEGKIQTRVLSANTRYGAYLIVKVTKGAYGLDLVPAETSIKSKN 182

Query:   191 QIISANTAYLSCKDKKKHQMECLFYGNRTQRTKSRV--IEGD--ERFARERDDGWMEIEL 246
               IS +  YL C D+KK QM+ LFYGNR +R    V  + GD   R  + RDDGWMEIEL
Sbjct:   183 GQISKSATYLCCLDEKKQQMKRLFYGNREERMAMTVEAVGGDGKRREPKCRDDGWMEIEL 242

Query:   247 GEFFSGDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRPK 286
             GEF + + E D EV M+L E+KGYQLKGG++I+GIEVRPK
Sbjct:   243 GEFETREGE-DDEVNMTLTEVKGYQLKGGILIDGIEVRPK 281

GO:0005634 "nucleus" evidence=ISM;IPI

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IPI

TAIR|locus:2011806 PP2-B13 "phloem protein 2-B13" [Arabidopsis thaliana (taxid:3702)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 152/279 (54%), Positives = 197/279 (70%)

Query:    12 MLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITSLK- 70
             MLPE CV+ IL+ TSP DA  ++ VS  FR A +S+  WEKFLPS Y+ ++S+S    + 
Sbjct:     3 MLPEACVANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSHYKSLISQSTDHHRI 62

Query:    71 FSSKKELYLHLCNPILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSWKPSLK 130
             FSSKKE+Y  LC+ +LID  RK FK++K SGK SY+LSAR++SIT+SD   Y SW     
Sbjct:    63 FSSKKEIYRCLCDSLLIDNARKLFKINKFSGKISYILSARDISITYSDHASYCSWSNVSD 122

Query:   131 SRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLEMGN 190
             SRF E AEL     LEI+GKI+T +LSPNT Y AYL++ +T+ A+GLDL+P++T ++  N
Sbjct:   123 SRFSESAELITTDRLEIKGKIQTTVLSPNTKYGAYLIMKVTNGAYGLDLVPAETSVKSKN 182

Query:   191 QIISANTAYLSCKDKKKHQMECLFYGNRTQRTKSRV--IEGD--ERFARERDDGWMEIEL 246
                + NT YL C D+KK QM+ LFYGNR +R    V  + GD   R  + RDDGW+EIEL
Sbjct:   183 GQNNKNTTYLCCLDEKKQQMKRLFYGNREERMAMTVEAVGGDGKRREPKARDDGWLEIEL 242

Query:   247 GEFFSGDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRP 285
             GEF + + E D EV MSL E+KGYQLKGG+VI+GIEVRP
Sbjct:   243 GEFVTREGE-DDEVNMSLTEVKGYQLKGGIVIDGIEVRP 280

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2153954 PP2-B12 "phloem protein 2-B12" [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 2.6e-53, Sum P(2) = 2.6e-53
 Identities = 86/191 (45%), Positives = 122/191 (63%)

Query:    13 LPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITSLKFS 72
             LPE+C++ ++S TSP DACR + VS   RSAA+SN  WE+FLPSDY+  +  S++  +FS
Sbjct:     6 LPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYIDNSLS--RFS 63

Query:    73 SKKELYLHLC-NPILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSWKPSLKS 131
             +K +L+L  C +P+LI+ GR SF ++K SGKK ++LSAR+L I W D PE+W W     S
Sbjct:    64 NK-QLFLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWVSIPDS 122

Query:   132 RFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHR-AHGLDLLPSD-TFLEMG 189
             RF EVA L M+ W EI GKI T +LS  T Y AYL+       + G + LP + +F    
Sbjct:   123 RFEEVAGLLMVCWFEIRGKISTSLLSKATNYSAYLVFKEQEMGSFGFESLPLEVSFRSTR 182

Query:   190 NQIISANTAYL 200
              ++ +    +L
Sbjct:   183 TEVYNNRRVFL 193

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056231 PP2-B10 "phloem protein 2-B10" [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 3.3e-53, Sum P(2) = 3.3e-53
 Identities = 81/164 (49%), Positives = 108/164 (65%)

Query:    14 PEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITSLKFSS 73
             PEDC+S I+S T+P DAC A  VS  F S  +S++ WEKFLP+DY+ ++  S     FSS
Sbjct:    18 PEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPPSRV---FSS 74

Query:    74 KKELYLHLCN-PILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSWKPSLKSR 132
             KKELY  LCN P+L D  +KS  L+K+SGK+  +LSA  LSI W D P+YW W P  +SR
Sbjct:    75 KKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPIPESR 134

Query:   133 FLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHG 176
             F +VA+LR + W EI G+  T +LSP T Y AY++     + +G
Sbjct:   135 FEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAYIVFKGVDKCYG 178

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056196 PP2-B2 "phloem protein 2-B2" [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
 Identities = 83/189 (43%), Positives = 112/189 (59%)

Query:    13 LPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITSLKFS 72
             LPEDC+S I+S TSP DAC A  VS  F SA  S+  W+KFLPSDY  +V  S     FS
Sbjct:    50 LPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPPSRV---FS 106

Query:    73 SKKELYLHLC-NPILIDGGRKSFKLDKSSGKKSYVLSARE-LSITWSDRPEYWSWKPSLK 130
             SKKELY  +C NP+L++ G KSF L+K +GKK ++LS ++ + ITW   P+YW W    +
Sbjct:   107 SKKELYFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWRWISIPE 166

Query:   131 SRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLEMGN 190
             +RF EV EL  + W E+ G + T  LSP T Y AY++    +    L  +P +  + +  
Sbjct:   167 ARFEEVPELLNVCWFEVRGGMNTKELSPGTRYSAYIVFKTKNGCPNLGDVPVEATVGLVG 226

Query:   191 QIISANTAY 199
             Q  S    Y
Sbjct:   227 QESSQRHIY 235

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056201 PP2-B8 "phloem protein 2-B8" [Arabidopsis thaliana (taxid:3702)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 112/279 (40%), Positives = 167/279 (59%)

Query:     9 ELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITS 68
             EL+ LPE+CVSII+S TSP DAC    VS  F SA +S++ WEKF+P +Y+ ++S+S  +
Sbjct:    35 ELDDLPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQS-RA 93

Query:    69 LKFSSKKELYLHLCNP-ILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSWKP 127
              KF SKKELY  LC+  +LID G+KS  ++K++ K+  ++SA  L+I W + P+ W W P
Sbjct:    94 FKFLSKKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIP 153

Query:   128 SLKSRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLE 187
               ++RF  VAEL  +   EI G+I + ++SP T Y AY++    +  +G + +  +  + 
Sbjct:   154 DPQARFETVAELLEVCLFEIRGRINSRVISPKTRYSAYIVYKKLNICYGFENVAVEVVVG 213

Query:   188 MGNQIISANTAYLSCKDKKKHQMECLFYGNRTQRTKSRVIEGDERFARERDDGWMEIELG 247
             +  Q +  +     C D+    M+  F   R  R K+ V    ER    R DGWMEI++G
Sbjct:   214 VVGQDLEESCRRYICFDET---MDEQF--RRRDRGKNLV--KPER----RKDGWMEIKIG 262

Query:   248 EFFS-GDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRP 285
             EFF+ G    D E++M   E K    K GL+I+GIE+RP
Sbjct:   263 EFFNEGGLLNDDEIEMVALEAKQRHWKRGLIIQGIEIRP 301

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056181 MEE66 "AT2G02240" [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 110/243 (45%), Positives = 146/243 (60%)

Query:    11 NMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITSLK 70
             ++LPEDC+S I+S TSP DAC A  VS  F SA  S+  W+KFLP +Y+ +VSRS     
Sbjct:    62 DVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSRSRV--- 118

Query:    71 FSSKKELYLHLC-NPILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSWKPSL 129
             F+SKKELY  LC NP+LI+ G+KSF L+K+SGK+  +LS++EL ITW   PEYW W    
Sbjct:   119 FASKKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWISIP 178

Query:   130 KSRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLEMG 189
             +SRF ++AEL  + W EI GK    +LSP T Y AY++     R  GL  LP +  L + 
Sbjct:   179 ESRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFKTKDRCPGLGHLPVEVGLGLV 238

Query:   190 NQIISANTAY-LSCKDKKKHQMECLFYGNRTQRTKSRVIEGDERFARERDDGWMEIELGE 248
              Q  S    Y +  +D++         G R  R    V + D+R     +DGWME ELGE
Sbjct:   239 GQESSKRFIYFIGPRDRR---------GRRETRD---VTKPDQR-----EDGWMEAELGE 281

Query:   249 FFS 251
             FF+
Sbjct:   282 FFN 284

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

TAIR|locus:2016349 PP2-B11 "phloem protein 2-B11" [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
 Identities = 78/182 (42%), Positives = 109/182 (59%)

Query:    10 LNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITSL 69
             +N LPEDC++ ILSLT+PLD CR + VS  FRSAA S+  W  FLP+D+    +      
Sbjct:     1 MNNLPEDCIAKILSLTTPLDVCRLSAVSSIFRSAAGSDDVWNHFLPADFP---AGFAAPA 57

Query:    70 KFSSKKELYLHLC-NPILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSWKPS 128
                ++K+L+  L  NP+LI+G   SF L++ SG K Y+++AR L+I W     YW W   
Sbjct:    58 GLPTRKQLFFSLVDNPLLINGTLLSFSLERKSGNKCYMMAARALNIVWGHEQRYWHWISL 117

Query:   129 LKSRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLEM 188
               +RF EVAEL M+ WLEI GKI   +LS +T+Y AY +    H  +G    P +T L +
Sbjct:   118 PNTRFGEVAELIMVWWLEITGKINITLLSDDTLYAAYFVFKWNHSPYGFRQ-PVETSLVL 176

Query:   189 GN 190
              +
Sbjct:   177 AD 178

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056166 PP2-B6 "phloem protein 2-B6" [Arabidopsis thaliana (taxid:3702)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 107/276 (38%), Positives = 156/276 (56%)

Query:    13 LPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITSLKFS 72
             LPEDC+S I+S TSP D C +  VS +F  A + +  WEKFLPS+Y+ ++        FS
Sbjct:    48 LPEDCISNIISFTSPRDVCVSASVSKSFAHAVQCDSIWEKFLPSEYESLIPPWRV---FS 104

Query:    73 SKKELYLHLC-NPILIDGGRKSFKLDKSSGKKSYVLSARELSITWSDRPEYWSWKPSLKS 131
             SKK+LY  LC +P+L++ G+KSF L+ +SGKK  +L+A+EL IT  + PEYW W    +S
Sbjct:   105 SKKDLYFTLCYDPVLVEDGKKSFWLETASGKKCVLLAAKELWITGGNNPEYWQWIELCES 164

Query:   132 RFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLEMGNQ 191
              F +V EL      ++ G + T +LS  T Y  Y++  I    HGL  LP          
Sbjct:   165 SFEKVPELLNNRSFQMGGSMSTQILSLGTHYSVYIVYKIKDERHGLRDLP---------- 214

Query:   192 IISANTAYLSCKDKKKHQMECLFYGNRTQRTKSRVIEGDERFARERDDGWMEIELGEFFS 251
              I     +   +  K  Q  C  +   T +TK    +   + +++R DGWME E+G+FF+
Sbjct:   215 -IQVGVGFKGQEMPK--QFIC--FDESTDKTKEWPKKKLMK-SKKRGDGWMEAEIGDFFN 268

Query:   252 -GDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRPK 286
              G   G  EV++S+ ++    LK G++IEGIE RPK
Sbjct:   269 DGGLMGFDEVEVSIVDVTSPNLKCGVMIEGIEFRPK 304

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0052542 "defense response by callose deposition" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O80494	P2B15_ARATH	No assigned EC number	0.5734	0.9615	0.9515	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00022693001 SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (285 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	286
pfam14299	154	pfam14299, PP2, Phloem protein 2	6e-70
pfam00646	48	pfam00646, F-box, F-box domain	0.001

>gnl|CDD|222661 pfam14299, PP2, Phloem protein 2

 Score =  212 bits (543), Expect = 6e-70
 Identities = 79/186 (42%), Positives = 101/186 (54%), Gaps = 32/186 (17%)

Query: 101 GKKSYVLSARELSITWSDRPEYWSWKPSLKSRFLEVAELRMISWLEIEGKIRTHMLSPNT 160
           GKK Y+LSAR LSITW D P YW W P  +SRF EVAEL  + WLEI GKI T MLSP T
Sbjct: 1   GKKCYMLSARALSITWGDDPRYWRWIPLPESRFSEVAELLDVCWLEIRGKINTRMLSPGT 60

Query: 161 MYRAYLLINITHRAHGLDLLPSDTFLEMGNQIISANTAYLSCKDKKKHQMECLFYGNRTQ 220
            Y AYL+  +  RA+G D  P +  + + +                              
Sbjct: 61  TYSAYLVFKLADRAYGWDEKPVEFSVSVPD------------------------------ 90

Query: 221 RTKSRVIEGDERFARERDDGWMEIELGEFFSGDEEGDQEVKMSLREIKGYQLKGGLVIEG 280
             +    E       +R DGWMEIE+GEFF+ +   D EV+ S+RE+ G   KGGL+++G
Sbjct: 91  -GQKSRQERYVCLPEKRGDGWMEIEVGEFFN-EGGEDGEVEFSMREVDGGHWKGGLIVDG 148

Query: 281 IEVRPK 286
           IE+RPK
Sbjct: 149 IEIRPK 154

Phloem protein 2 (PP2) is one of the most abundant and enigmatic proteins in the phloem sap. PP2 is translocated in the assimilate stream where its lectin activity or RNA-binding properties can exert effects over long distances. Length = 154

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 19/45 (42%), Positives = 25/45 (55%)

Query: 10 LNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFL 54
          L  LP+D +  ILS   P D  R +LVS  +RS  +S   W+K L
Sbjct: 3  LLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRL 47

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	286
PF14299	154	PP2: Phloem protein 2	100.0
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.71
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.4
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.3
PF06881	109	Elongin_A: RNA polymerase II transcription factor	95.2
KOG3926	332	consensus F-box proteins [Amino acid transport and	94.18
KOG2997	366	consensus F-box protein FBX9 [General function pre	93.52
KOG4408	386	consensus Putative Mg2+ and Co2+ transporter CorD	90.5
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	86.38
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	84.92

>PF14299 PP2: Phloem protein 2

Probab=100.00  E-value=6.6e-66  Score=440.15  Aligned_cols=152  Identities=49%  Similarity=0.887  Sum_probs=140.1

Q ss_pred             CceEEEEecccceeeecCCCCceEEeeCCccccccceEEeeeeEEEEEEEEeccccCCCcceEEEEEEEecCCcCCCCcc
Q 039003          101 GKKSYVLSARELSITWSDRPEYWSWKPSLKSRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLL  180 (286)
Q Consensus       101 G~kCymLsAR~L~ItWgd~~~YW~W~~~p~SRF~EVAeL~~VcWLEI~G~i~~~~LSP~t~Y~aylv~kl~d~~~G~d~~  180 (286)
                      ||||||||||+|+|+|||||+||+|+++|+|||.|||||++||||||+|+|++.+|||+|+|+||||||+++++|||+..
T Consensus         1 G~~cymlsaR~L~I~Wg~~~~yW~w~~~~~srf~evAeL~~V~WLeI~G~i~~~~Lsp~t~Y~vy~v~kl~~~~~Gw~~~   80 (154)
T PF14299_consen    1 GKKCYMLSARALSITWGDDPRYWKWIPLPDSRFSEVAELLQVCWLEIRGKINTRMLSPGTTYAVYFVFKLKDDAYGWDSP   80 (154)
T ss_pred             CCEEEEEEhhhCEEecCCCCcceeeccCCcccceeeeEEEEEEEEEEEEEEEceEcCCCCEEEEEEEEEecCCCCCCCcC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CeeEEEEe-ccee-eeeeEEecccCccccccchheeccccccccccccccCccccccccCCCeEEEEeeeEEeCCCCCce
Q 039003          181 PSDTFLEM-GNQI-ISANTAYLSCKDKKKHQMECLFYGNRTQRTKSRVIEGDERFARERDDGWMEIELGEFFSGDEEGDQ  258 (286)
Q Consensus       181 pv~~sv~~-gg~~-~~~~~v~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~DgW~EielGeF~~~~~~~~~  258 (286)
                      ||+++|++ ++.. ...+.+                                 .+|+.|+|||||||+|||+++++++ +
T Consensus        81 pv~~~v~~~~~~~~~~~~~~---------------------------------~~~~~r~dgW~Eie~GeF~~~~~~~-~  126 (154)
T PF14299_consen   81 PVEFSVKVPDGEKYEQERKV---------------------------------CLPKERGDGWMEIELGEFFNEGGDD-G  126 (154)
T ss_pred             CEEEEEEeCCCccccceeeE---------------------------------EcCCCCCCCEEEEEcceEEecCCCC-c
Confidence            99999999 4332 011222                                 3467889999999999999998777 7


Q ss_pred             EEEEEEEEEeCCeecceEEEEeEEEEeC
Q 039003          259 EVKMSLREIKGYQLKGGLVIEGIEVRPK  286 (286)
Q Consensus       259 eV~fsl~E~~~~~wK~GLiv~GIeIRPk  286 (286)
                      +|+|+|+|+++++||+||||+|||||||
T Consensus       127 ev~f~~~E~~~~~wK~GLiv~GieIRPK  154 (154)
T PF14299_consen  127 EVEFSMYEVDSGHWKGGLIVEGIEIRPK  154 (154)
T ss_pred             EEEEEEEEecCCcccCeEEEEEEEEecC
Confidence            9999999999999999999999999998

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.71  E-value=1.2e-08  Score=69.86  Aligned_cols=45  Identities=29%  Similarity=0.525  Sum_probs=40.3

Q ss_pred             ccCchhHHHHHHHhcCChHhHHHHhhccHHHHHhhcCchhhcCCC
Q 039003           10 LNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFL   54 (286)
Q Consensus        10 ~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sD~vW~~fl   54 (286)
                      +.+||+|.+..|+++++|.|.+++++||+.|+.++.++.+|.++.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~   45 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLC   45 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence            478999999999999999999999999999999999999998764

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.40  E-value=8.8e-08  Score=65.31  Aligned_cols=45  Identities=38%  Similarity=0.547  Sum_probs=39.5

Q ss_pred             cccCchhHHHHHHHhcCChHhHHHHhhccHHHHHhhcCchhhcCC
Q 039003            9 ELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKF   53 (286)
Q Consensus         9 ~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sD~vW~~f   53 (286)
                      .+.+||++++..|++++++.|.++++.||+.|+.+++++.+|..+
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~   46 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI   46 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence            478999999999999999999999999999999999999999765

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.30  E-value=8.5e-07  Score=57.85  Aligned_cols=40  Identities=38%  Similarity=0.479  Sum_probs=38.6

Q ss_pred             chhHHHHHHHhcCChHhHHHHhhccHHHHHhhcCchhhcC
Q 039003           13 LPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEK   52 (286)
Q Consensus        13 Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sD~vW~~   52 (286)
                      ||++++..|+++++|.|.+++++||+.|+.+++++.+|..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence            7999999999999999999999999999999999999975

>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A

Probab=95.20  E-value=0.011  Score=47.66  Aligned_cols=71  Identities=21%  Similarity=0.292  Sum_probs=58.6

Q ss_pred             cccCchhHHHHHHHhcCChHhHHHHhhccHHHHHhhcCchhhcCCCCCCchhhhhcccCCCCCCcHHHHHHHhc
Q 039003            9 ELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITSLKFSSKKELYLHLC   82 (286)
Q Consensus         9 ~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sD~vW~~flP~d~~~i~~~~~~~~~~~SkKelY~~L~   82 (286)
                      +++++|-++|.-||...+|....++-.-|+-+  +-++|.+|.+|+=.||..-.... .+.+.-|.+++|..+.
T Consensus         3 dvG~~py~ll~piL~~~~~~QL~~iE~~np~l--~~~tdeLW~~~i~rdFp~~~~~~-~~~~~~~Wr~~Y~~~~   73 (109)
T PF06881_consen    3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNPHL--IEDTDELWKKLIKRDFPEESKRQ-KPKEPESWRELYEKLK   73 (109)
T ss_pred             ccCCCCHHHHHHHHccCCHHHHHHHHHhCCCc--chhhHHHHHHHHHhHCcChhhcc-cccccchHHHHHHHHH
Confidence            57899999999999999999999999999755  67799999999999997522221 1344568999999986

In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane

>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]

Probab=94.18  E-value=0.04  Score=51.50  Aligned_cols=81  Identities=23%  Similarity=0.286  Sum_probs=61.9

Q ss_pred             CCCcccccccCchhHHHHHHHhcCC-hHhHHHHhhccHHHHHhhcCchhhcCCCCCCchh--hhhcccC-CCCCCcHHHH
Q 039003            2 EPTTKCIELNMLPEDCVSIILSLTS-PLDACRATLVSWAFRSAAESNVAWEKFLPSDYQD--IVSRSIT-SLKFSSKKEL   77 (286)
Q Consensus         2 ~~~~~~~~~~~Lpe~cia~ils~t~-P~d~cr~a~vs~~fr~aa~sD~vW~~flP~d~~~--i~~~~~~-~~~~~SkKel   77 (286)
                      ||++++-.|-|||++|+-.||-+++ -+|.--+|.|-++....++.+-+|.+.+--.|.+  |-..... -....-.|.+
T Consensus       194 ~~~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~k~~q~dWkqm  273 (332)
T KOG3926|consen  194 EPDPAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILSKKGQKDWKQM  273 (332)
T ss_pred             CCCcCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccchhHHHH
Confidence            7888899999999999999999865 7999999999999999999999999877644431  2222111 0111236789


Q ss_pred             HHHhc
Q 039003           78 YLHLC   82 (286)
Q Consensus        78 Y~~L~   82 (286)
                      |+.|.
T Consensus       274 yf~L~  278 (332)
T KOG3926|consen  274 YFQLR  278 (332)
T ss_pred             HHHHH
Confidence            98885

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=93.52  E-value=0.03  Score=53.38  Aligned_cols=79  Identities=19%  Similarity=0.324  Sum_probs=56.5

Q ss_pred             cccCchhHHHHHHHhcC-----ChHhHHHHhhccHHHHHhhcCchhhcCCCCCCchhhhhcccCC----CCCCcHHHHHH
Q 039003            9 ELNMLPEDCVSIILSLT-----SPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITS----LKFSSKKELYL   79 (286)
Q Consensus         9 ~~~~Lpe~cia~ils~t-----~P~d~cr~a~vs~~fr~aa~sD~vW~~flP~d~~~i~~~~~~~----~~~~SkKelY~   79 (286)
                      .|..||++.+-.|+...     +-++-.++|+||+.|+-+|..|.+|..+|=.-|+.-+-...+-    .-..|.+++|+
T Consensus       106 ~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~Mfl  185 (366)
T KOG2997|consen  106 SISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWREMFL  185 (366)
T ss_pred             hhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHHHHHh
Confidence            36889999998888664     4599999999999999999999999998876555332221110    11346777766


Q ss_pred             HhcCC-ceecC
Q 039003           80 HLCNP-ILIDG   89 (286)
Q Consensus        80 ~L~~p-vlld~   89 (286)
                      .  +| |.+||
T Consensus       186 ~--RpRvrFdG  194 (366)
T KOG2997|consen  186 E--RPRVRFDG  194 (366)
T ss_pred             h--Ccceeecc
Confidence            5  34 66655

>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]

Probab=90.50  E-value=0.084  Score=50.66  Aligned_cols=58  Identities=21%  Similarity=0.232  Sum_probs=51.6

Q ss_pred             cccccccCchhHHHHHHHhcCChHhHHHHhhccHHHHHhhcCchhhcCCCCCCchhhhh
Q 039003            5 TKCIELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVS   63 (286)
Q Consensus         5 ~~~~~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sD~vW~~flP~d~~~i~~   63 (286)
                      ...++++.||.+-+.++++++.++++.+.|+||+.+...++-+.+|++++-.++. |..
T Consensus         3 ~~~~~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l~-is~   60 (386)
T KOG4408|consen    3 TLPLGLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYLL-ISE   60 (386)
T ss_pred             ccccchhhcccccceeeecccchhhhhcceeechHHhhhhhcccccccccccccc-ccc
Confidence            3467899999999999999999999999999999999999999999999976654 443

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=86.38  E-value=0.66  Score=45.34  Aligned_cols=39  Identities=21%  Similarity=0.319  Sum_probs=35.3

Q ss_pred             cccCchhHHHHHHHhcC-ChHhHHHHhhccHHHHHhhcCc
Q 039003            9 ELNMLPEDCVSIILSLT-SPLDACRATLVSWAFRSAAESN   47 (286)
Q Consensus         9 ~~~~Lpe~cia~ils~t-~P~d~cr~a~vs~~fr~aa~sD   47 (286)
                      .-.+||+|.|..|..++ +..|..|+++|++++|+|+...
T Consensus         3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~   42 (373)
T PLN03215          3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGV   42 (373)
T ss_pred             ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccc
Confidence            35689999999999998 7899999999999999998863

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=84.92  E-value=0.57  Score=47.89  Aligned_cols=55  Identities=16%  Similarity=0.163  Sum_probs=48.0

Q ss_pred             cccccccCchhHHHHHHHhcCChHhHHHHhhccHHHHHhhcCchhhcCCCCCCch
Q 039003            5 TKCIELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQ   59 (286)
Q Consensus         5 ~~~~~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sD~vW~~flP~d~~   59 (286)
                      .....+..||-+..-.||+++++++.++++.||+.|+.-++.|.+|.+.+.....
T Consensus       103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~  157 (537)
T KOG0274|consen  103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIG  157 (537)
T ss_pred             cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcc
Confidence            3344577899999999999999999999999999999999999999977776444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	286
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 3e-06
 Identities = 43/296 (14%), Positives = 87/296 (29%), Gaps = 93/296 (31%)

Query: 6   KCIEL--NMLPEDCVSIILSLTSPL------DACRATLVSWAFRSAAESNVAWEKFLPSD 57
           K ++     LP + ++      +P       ++ R  L +W           W+      
Sbjct: 309 KYLDCRPQDLPREVLTT-----NPRRLSIIAESIRDGLATWDN---------WKHVNCDK 354

Query: 58  YQDIVSRSITSLKFSSKKELYLHLCNPILIDGGRKSFKLDKSSGKKSYVLSARELSITWS 117
              I+  S+  L+ +  ++++  L   +       S             +    LS+ W 
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLS--VF----PPSAH-----------IPTILLSLIWF 397

Query: 118 DRPEY-----------------WSWKPS----------LKSRFLEVAEL--RMISWLEIE 148
           D  +                     K S          LK +      L   ++    I 
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQ-PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456

Query: 149 GKIRTHMLSPNTM------YRAYLLINITHRAHGLDLLPSDTFLE---MGNQIISANTAY 199
               +  L P  +      +  + L NI H    + L     FL+   +  +I   +TA+
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEH-PERMTLFR-MVFLDFRFLEQKIRHDSTAW 514

Query: 200 LSCKDKKKHQMECLFYGNRTQRTKSRVIEGDERFARERDDGWMEIELGEFFSGDEE 255
            +         +  FY       K  + + D ++ R      +   + +F    EE
Sbjct: 515 NASGSILNTLQQLKFY-------KPYICDNDPKYER------LVNAILDFLPKIEE 557

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 15/50 (30%), Positives = 19/50 (38%)

Query: 10 LNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQ 59
          L  LP D    ILS  SP D C+    +  +       + W  FL  D  
Sbjct: 5  LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLP 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	286
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.9
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.58
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.3
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.64
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.56
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.01
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	94.73
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	94.17
4hfx_A	97	Transcription elongation factor B polypeptide 3; s	90.65
1dyo_A	160	Endo-1,4-beta-xylanase Y; carbohydrate-binding mod	82.82

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.90  E-value=1.3e-09  Score=75.23  Aligned_cols=50  Identities=14%  Similarity=0.203  Sum_probs=40.6

Q ss_pred             CcccccccCchhHHHHHHHhcCChHhHHHHhhccHHHHHhhcCchhhcCC
Q 039003            4 TTKCIELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKF   53 (286)
Q Consensus         4 ~~~~~~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sD~vW~~f   53 (286)
                      +.....+.+||++++..|+++++|.|.+++++||+.|+.++.++.+|..+
T Consensus         3 ~~~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l   52 (53)
T 1fs1_A            3 NFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (53)
T ss_dssp             ------CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred             CCCCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence            44566799999999999999999999999999999999999999999864

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.58  E-value=1.7e-08  Score=93.72  Aligned_cols=75  Identities=27%  Similarity=0.436  Sum_probs=61.5

Q ss_pred             ccccCchhHHHHHHHhcCChHhHHHHhhccHHHHHhhcCchhhcCCCCCCch---hhhhcccCCC-------------CC
Q 039003            8 IELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQ---DIVSRSITSL-------------KF   71 (286)
Q Consensus         8 ~~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sD~vW~~flP~d~~---~i~~~~~~~~-------------~~   71 (286)
                      ..|++||.+++-.|+||++|.|+||+|+||+.||.+|+.+.+|..||-+|++   +|-..+.|..             .+
T Consensus         3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~~s~p~~~~~~~~~~~~~~~~~   82 (312)
T 3l2o_B            3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPDLEILKKPISEVTDGAF   82 (312)
T ss_dssp             CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCGGGCCSCHHHHSSCSCC----C
T ss_pred             chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCccccccCcchhhccCcccccccccc
Confidence            4589999999999999999999999999999999999999999999987744   4444333211             14


Q ss_pred             CcHHHHHHHhc
Q 039003           72 SSKKELYLHLC   82 (286)
Q Consensus        72 ~SkKelY~~L~   82 (286)
                      ..++.+|.+=|
T Consensus        83 ~~~~~~y~~~~   93 (312)
T 3l2o_B           83 FDYMAVYRMCC   93 (312)
T ss_dssp             CCHHHHHHHHC
T ss_pred             ccHHHHHHhcC
Confidence            46789999876

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.30  E-value=2.9e-07  Score=85.42  Aligned_cols=84  Identities=13%  Similarity=0.147  Sum_probs=62.5

Q ss_pred             CcccccccCchhHHHHHHHhcCChHhHH-HHhhccHHHHHhhcCchhhcCCCCCCchhhhhcccCCCCCCcHHHHHHHhc
Q 039003            4 TTKCIELNMLPEDCVSIILSLTSPLDAC-RATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITSLKFSSKKELYLHLC   82 (286)
Q Consensus         4 ~~~~~~~~~Lpe~cia~ils~t~P~d~c-r~a~vs~~fr~aa~sD~vW~~flP~d~~~i~~~~~~~~~~~SkKelY~~L~   82 (286)
                      ...++.+..||++.+..||+++.|.+.+ |+++||+.||..++++.+|.++|....  +........+..+.|.+|+.-.
T Consensus        45 ~~~~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~g--~~~~~~~~~~~~~Wk~~y~~~~  122 (297)
T 2e31_A           45 AEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEG--LVPEGSADEERDHWQQFYFLSK  122 (297)
T ss_dssp             --CCCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHTT--CCCC-----CCSCHHHHHHHHH
T ss_pred             cccccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhccC--cccccccCCCCCChhhhhehee
Confidence            3346788999999999999999999999 999999999999999999998877551  2111111124457999998754


Q ss_pred             -CCceecC
Q 039003           83 -NPILIDG   89 (286)
Q Consensus        83 -~pvlld~   89 (286)
                       .-+||.+
T Consensus       123 ~gRNLL~N  130 (297)
T 2e31_A          123 RRRNLLRN  130 (297)
T ss_dssp             HCCCCSSC
T ss_pred             cccceeec
Confidence             3456654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.00  E-value=2.3e-06  Score=79.72  Aligned_cols=55  Identities=25%  Similarity=0.391  Sum_probs=49.8

Q ss_pred             CCCCcccccccCchhHHHHHHHhcCChHhHHHHhhccHHHHHhhcCchhhcCCCC
Q 039003            1 MEPTTKCIELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLP   55 (286)
Q Consensus         1 ~~~~~~~~~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sD~vW~~flP   55 (286)
                      ++|.....-|..||++++..||++++|.|.|++|+||+.|+.+++++.+|.+++-
T Consensus        10 ~~~~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~   64 (445)
T 2ovr_B           10 IEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK   64 (445)
T ss_dssp             HCCCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred             cCccccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence            3566666678999999999999999999999999999999999999999997764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.64  E-value=1.2e-05  Score=74.92  Aligned_cols=56  Identities=20%  Similarity=0.269  Sum_probs=49.1

Q ss_pred             CCCcccccccCchhH----HHHHHHhcCChHhHHHHhhccHHHHHhhcCchhhcCCCCCC
Q 039003            2 EPTTKCIELNMLPED----CVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSD   57 (286)
Q Consensus         2 ~~~~~~~~~~~Lpe~----cia~ils~t~P~d~cr~a~vs~~fr~aa~sD~vW~~flP~d   57 (286)
                      +|.-..--|..||++    .+..||++++|.|.|++++||+.|+..++++.+|.+++..+
T Consensus         3 ~~~~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~   62 (435)
T 1p22_A            3 AIMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM   62 (435)
T ss_dssp             CCCSCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred             ChhhhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence            455555567889999    99999999999999999999999999999999999876544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.56  E-value=2e-05  Score=73.31  Aligned_cols=52  Identities=19%  Similarity=0.162  Sum_probs=45.1

Q ss_pred             CCcccccccCchhHHHHHHHhcCChHhHHHHhhccHHHHHhhcC-chhhcCCC
Q 039003            3 PTTKCIELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAES-NVAWEKFL   54 (286)
Q Consensus         3 ~~~~~~~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~s-D~vW~~fl   54 (286)
                      |.-..--|..||++++..|+++++|.|.|++++||+.|+..+++ +.+|.+++
T Consensus         8 ~~~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~   60 (464)
T 3v7d_B            8 DNLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL   60 (464)
T ss_dssp             -CCCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHH
T ss_pred             cccccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            33333447789999999999999999999999999999999987 89999876

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.01  E-value=0.00039  Score=62.54  Aligned_cols=48  Identities=15%  Similarity=0.223  Sum_probs=42.0

Q ss_pred             ccccccCchhHHHHHHHhcCChHhHHHHhhccHHHHHhhcCchhhcCC
Q 039003            6 KCIELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKF   53 (286)
Q Consensus         6 ~~~~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sD~vW~~f   53 (286)
                      ....+++||++++..|+++++++|.++++.||+.|+.++.+...|..+
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l   52 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence            356789999999999999999999999999999999998777778753

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=94.73  E-value=0.018  Score=55.43  Aligned_cols=35  Identities=17%  Similarity=0.226  Sum_probs=29.4

Q ss_pred             cccCchhHHHHHHHhcCC-hHhHHHHhhccHHHHHh
Q 039003            9 ELNMLPEDCVSIILSLTS-PLDACRATLVSWAFRSA   43 (286)
Q Consensus         9 ~~~~Lpe~cia~ils~t~-P~d~cr~a~vs~~fr~a   43 (286)
                      .+++||++++..|+++++ ++|++++|.||+.|+.+
T Consensus         5 ~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            5 IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             -----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             chhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            478999999999999999 99999999999999988

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=94.17  E-value=0.026  Score=54.45  Aligned_cols=34  Identities=18%  Similarity=0.246  Sum_probs=31.6

Q ss_pred             cCchhHHHHHHHhcC-ChHhHHHHhhccHHHHHhh
Q 039003           11 NMLPEDCVSIILSLT-SPLDACRATLVSWAFRSAA   44 (286)
Q Consensus        11 ~~Lpe~cia~ils~t-~P~d~cr~a~vs~~fr~aa   44 (286)
                      .+||++|+.+|++|+ +++|+++++.||+.|+.+.
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~   48 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID   48 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence            379999999999999 8999999999999999873

>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}

Probab=90.65  E-value=0.097  Score=40.57  Aligned_cols=64  Identities=19%  Similarity=0.334  Sum_probs=40.1

Q ss_pred             CchhHHHHHHHhcCChHhHHHHhhccHHHHHhhcCchhhcCCCCCCchhhhhcccCCCCCCcHHHHHHHhc
Q 039003           12 MLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITSLKFSSKKELYLHLC   82 (286)
Q Consensus        12 ~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sD~vW~~flP~d~~~i~~~~~~~~~~~SkKelY~~L~   82 (286)
                      ..|-+.+.-||-+.||..-.++-.-|+.+  .-++|-+|.+||-.||..-.     +...-|.+++|.+|.
T Consensus        12 ~~Py~lL~PVLek~tp~QL~~IE~~nP~L--~~dTdeLWk~~c~rdF~~~~-----p~e~esWRelY~rl~   75 (97)
T 4hfx_A           12 GVPYSVLEPVLERCTPDQLYRIEEYNHVL--IEETDQLWKVHCHRDFKEER-----PEEYESWREMYLRLQ   75 (97)
T ss_dssp             --------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSC-----CCSSSCHHHHHHHHH
T ss_pred             CCcHHHHHHHHccCCHHHHHHHHHhCccc--chhhHHHHHHHHHhHCcccC-----CCCCCCHHHHHHHHH
Confidence            46888889999999999999999999965  78899999999999998332     245579999999997

>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A

Probab=82.82  E-value=17  Score=29.48  Aligned_cols=91  Identities=8%  Similarity=0.030  Sum_probs=52.4

Q ss_pred             cccCCCcceEEEEEEEecCCcCCCCccCeeEEEEe-c--ceeeeeeEEecccCccccccchheeccccccccccccccCc
Q 039003          154 HMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLEM-G--NQIISANTAYLSCKDKKKHQMECLFYGNRTQRTKSRVIEGD  230 (286)
Q Consensus       154 ~~LSP~t~Y~aylv~kl~d~~~G~d~~pv~~sv~~-g--g~~~~~~~v~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (286)
                      ..|.||++|.+..-+|+.+..   +...+.+++.. +  |..   +...+.                            .
T Consensus        63 ~~l~~g~~Y~~Sa~V~~~~g~---~~~~v~~~l~~~~~~g~~---~y~~i~----------------------------~  108 (160)
T 1dyo_A           63 RTFVPGNTYCFSVVASFIEGA---SSTTFCMKLQYVDGSGTQ---RYDTID----------------------------M  108 (160)
T ss_dssp             TTSCTTCEEEEEEEEECCSSS---SCEEEEEEEEEECTTSCE---EEEEEE----------------------------E
T ss_pred             hhccCCCEEEEEEEEEECCCC---CceeEEEEEEEEcCCCCE---EEEEEe----------------------------e
Confidence            468899999999999987632   21223333332 1  211   111111                            0


Q ss_pred             cccccccCCCeEEEEeeeEEeCCCCCceEEEEEEEEEeCCeecceEEEEeEEEEeC
Q 039003          231 ERFARERDDGWMEIELGEFFSGDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRPK  286 (286)
Q Consensus       231 ~~~P~~R~DgW~EielGeF~~~~~~~~~eV~fsl~E~~~~~wK~GLiv~GIeIRPk  286 (286)
                      .   ....++|.+++-|.|.......  .+.+- .|.  ..-..=+.|+.|.|.|.
T Consensus       109 ~---~~~~~~W~~L~G~~ft~~~~~~--~~~ly-ve~--~~~~~d~yiDdv~i~~~  156 (160)
T 1dyo_A          109 K---TVGPNQWVHLYNPQYRIPSDAT--DMYVY-VET--ADDTINFYIDEAIGAVA  156 (160)
T ss_dssp             E---EECSSCCEEEEEEEEECCTTCE--EEEEE-EEE--SSCCCCEEEEEEEEEET
T ss_pred             E---EEcCCccEEEECcEEEeCCCCC--EEEEE-EEC--CCCCccEEEEEEEEEeC
Confidence            0   1234789999987999865322  34332 233  23455588999998873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	286
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	1e-04
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	6e-04

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 1e-04
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 6/85 (7%)

Query: 1  MEPTTKCIELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEK------FL 54
          +EP  +   +++LP++    +LS   P D  +A      +R  AE N+ W +        
Sbjct: 10 IEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGID 69

Query: 55 PSDYQDIVSRSITSLKFSSKKELYL 79
             +             S  K  Y+
Sbjct: 70 EPLHIKRRKVIKPGFIHSPWKSAYI 94

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (80), Expect = 6e-04
 Identities = 7/40 (17%), Positives = 15/40 (37%)

Query: 11 NMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAW 50
          + LP++ +  I S     +  + + V   +   A     W
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	286
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.05
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.93
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.27
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.12
d1h6ya_	157	Xylan-binding domain {Clostridium thermocellum [Ta	80.48

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=6.4e-11  Score=90.19  Aligned_cols=81  Identities=22%  Similarity=0.288  Sum_probs=62.0

Q ss_pred             CCCCcccccccCchhHHHHHHHhcCChHhHHHHhhccHHHHHhhcCchhhcCCCCCCchhhhh-----c-ccCCCCCCcH
Q 039003            1 MEPTTKCIELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVS-----R-SITSLKFSSK   74 (286)
Q Consensus         1 ~~~~~~~~~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sD~vW~~flP~d~~~i~~-----~-~~~~~~~~Sk   74 (286)
                      ++|.-..--|..||++++..|+++++|.|+|++|+||+.|+.++.+|.+|++.+-.++...-.     . ..+.....+.
T Consensus        10 ~~p~~~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~~~~~~~~~~~~~~~~~~~~~~~W   89 (102)
T d2ovrb1          10 IEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPW   89 (102)
T ss_dssp             HCCCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHH
T ss_pred             cCchhccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCCCCchHHHhhhcccCCCCCcCH
Confidence            366667777899999999999999999999999999999999999999998776544321111     0 1112234568


Q ss_pred             HHHHHHh
Q 039003           75 KELYLHL   81 (286)
Q Consensus        75 KelY~~L   81 (286)
                      |++|.+.
T Consensus        90 K~~Y~~~   96 (102)
T d2ovrb1          90 KSAYIRQ   96 (102)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999875

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=4.4e-10  Score=72.86  Aligned_cols=41  Identities=17%  Similarity=0.225  Sum_probs=39.8

Q ss_pred             ccCchhHHHHHHHhcCChHhHHHHhhccHHHHHhhcCchhh
Q 039003           10 LNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAW   50 (286)
Q Consensus        10 ~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sD~vW   50 (286)
                      ++.||++++..|+++++|.|.||+++||+.|+.+++++.+|
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccC
Confidence            57899999999999999999999999999999999999999

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.27  E-value=8.9e-08  Score=72.47  Aligned_cols=44  Identities=18%  Similarity=0.218  Sum_probs=39.9

Q ss_pred             ccCchhHHHHHHHhcCChHhHHHHhhccHHHHHhhcCc-hhhcCC
Q 039003           10 LNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESN-VAWEKF   53 (286)
Q Consensus        10 ~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sD-~vW~~f   53 (286)
                      |.+||++.+..|+++++|.|.|++|+||+.|+..+++| .+|.+.
T Consensus         6 ~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l   50 (100)
T d1nexb1           6 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKL   50 (100)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHH
T ss_pred             hhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            56899999999999999999999999999999887654 799865

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=2.5e-07  Score=71.79  Aligned_cols=47  Identities=23%  Similarity=0.438  Sum_probs=42.6

Q ss_pred             ccCchh----HHHHHHHhcCChHhHHHHhhccHHHHHhhcCchhhcCCCCC
Q 039003           10 LNMLPE----DCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPS   56 (286)
Q Consensus        10 ~~~Lpe----~cia~ils~t~P~d~cr~a~vs~~fr~aa~sD~vW~~flP~   56 (286)
                      |..||.    +.+..|+|+++|.|.|++|+||+.|+..++++.+|.+++-.
T Consensus        11 i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~   61 (118)
T d1p22a1          11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIER   61 (118)
T ss_dssp             HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence            456775    99999999999999999999999999999999999987644

>d1h6ya_ b.18.1.7 (A:) Xylan-binding domain {Clostridium thermocellum [TaxId: 1515]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM22
domain: Xylan-binding domain
species: Clostridium thermocellum [TaxId: 1515]

Probab=80.48  E-value=8.5  Score=27.96  Aligned_cols=98  Identities=6%  Similarity=0.047  Sum_probs=53.9

Q ss_pred             EEEeccccCCCcceEEEEEEEecCCcCCCCccCeeEEEEe-cceeeeeeEEecccCccccccchheeccccccccccccc
Q 039003          149 GKIRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLEM-GNQIISANTAYLSCKDKKKHQMECLFYGNRTQRTKSRVI  227 (286)
Q Consensus       149 G~i~~~~LSP~t~Y~aylv~kl~d~~~G~d~~pv~~sv~~-gg~~~~~~~v~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (286)
                      -.+....|.||++|.+.+-+|+.+...+   ..+.+.+.. ++.. ......+.                          
T Consensus        55 ~~~~~~~l~~g~tY~~s~~vk~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~--------------------------  104 (157)
T d1h6ya_          55 RALNPRTFVPGNTYCFSVVASFIEGASS---TTFCMKLQYVDGSG-TQRYDTID--------------------------  104 (157)
T ss_dssp             EECCTTTSCTTCEEEEEEEEECCSSSSC---EEEEEEEEEECTTS-CEEEEEEE--------------------------
T ss_pred             EEecceeccCCCEEEEEEEEEeCCCCcc---eeEEEEEEEecCCC-ceeEEEee--------------------------
Confidence            3444456889999999999998764322   122333333 1111 00110000                          


Q ss_pred             cCccccccccCCCeEEEEeeeEEeCCCCCceEEEEEEEEEeCCeecceEEEEeEEEEeC
Q 039003          228 EGDERFARERDDGWMEIELGEFFSGDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRPK  286 (286)
Q Consensus       228 ~~~~~~P~~R~DgW~EielGeF~~~~~~~~~eV~fsl~E~~~~~wK~GLiv~GIeIRPk  286 (286)
                           ......++|.++..++|....+..  .+.|-+ +.  ..-..-+.|+-+.+.|+
T Consensus       105 -----~~~~~~~~W~~~~~~~~~~~~~~~--~~~l~~-~~--~~~~~~~yiDDv~~~~~  153 (157)
T d1h6ya_         105 -----MKTVGPNQWVHLYNPQYRIPSDAT--DMYVYV-AT--ADDTINFYIDEAIGAVA  153 (157)
T ss_dssp             -----EEEECTTCCEEEEEEEEECCTTCE--EEEEEE-EE--SSCCCCEEEEEEEEEET
T ss_pred             -----EEEeccCccEEEEEEEEECCCCCc--EEEEEE-EC--CCCCceEEEeeEEEecc
Confidence                 011234689999888988765433  455432 22  22223389999988875