Citrus Sinensis ID: 039007

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
Protein Sequence
MLNSDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPALWERCKPLTGEDWSKIARIPRIMLDDEMTKSSDN
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEccccccccccccccccccccEEccccccccccHHHHHHHccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEccccccccccccccccccccccEEEEccEEcccccccccccccccEEEcEEEccccccHHcccccccccEEEccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccEEEEEcccccccccccccccccccEEEEccccccEEccccccccccccEEEccccccHHHHccccccccccccccccEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHcccEEcccccccccccHHHcccccccEEEEEccccccccccccHHHcccccccEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccccHcccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHccccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccccccccccHHHHHcccHccccccccccccc
Coil and Loop (DISEMBL)
mlnsdcqsipkrvrhlsfvsasasrNDFSSLLSDLRRVRTILFSindentsesfftscisksqflrvldlddstievlPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGqlsglrslilvdcpslislpsavkclsssetlilidckslnlnlniemegegshhdrdntRTHLQKLFVSGLKQLldlpqwllqgstktlqflgiedcpnfmALQGSLKDLEALETLLISACRKlsslpedihhlttlktlsikecpalwerckpltgedwskiariprimlddemtkssdn
Flexible Loop (DISEMBL)
mlnsdcqsipkrvrhlsfvsasasrndfssllsdlRRVRTILFsindentsesfFTSCISKSQFLRVLDLDDSTIEVLPreignlkhmryLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLttlktlsikecPALWErckpltgedwskiariprimlddemtkssdn
Low Complexity Region (SEG)
MLNSDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGlkqlldlpqwllqGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPALWERCKPLTGEDWSKIARIPRIMLDDEMTKSSDN
Disordered region (IsUnstruct)
****************************SSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEM*************THLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPALWERCKPLTGEDWSKIARIPRIML**********
Disordered Region (DISOPRED)
M**SDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIE****GS**DRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPALWERCKPLTGEDWSKIARIPRIMLDDEMTK****
Disordered Region (DISEMBL)
********IPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPALWERCKPLTGEDWSKIARIPRIMLDD********
Disordered Region (DISPRO)
*****CQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPALWERCKPLTGEDWSKIARIPRIMLDDEMT*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLNSDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPALWERCKPLTGEDWSKIARIPRIMLDDEMTKSSDN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	360	2.2.26 [Sep-21-2011]
Q7XA42	979	Putative disease resistan	N/A	no	0.725	0.266	0.299	2e-14
Q7XA40	992	Putative disease resistan	N/A	no	0.713	0.259	0.291	2e-13
Q7XA39	988	Putative disease resistan	N/A	no	0.330	0.120	0.409	1e-11
B5DX45	629	Leucine-rich repeat prote	yes	no	0.5	0.286	0.282	4e-11
Q7XBQ9	970	Disease resistance protei	N/A	no	0.491	0.182	0.316	1e-10
Q9LRR4	1054	Putative disease resistan	no	no	0.808	0.276	0.265	2e-10
Q1L8Y7	561	Leucine-rich repeat prote	yes	no	0.502	0.322	0.300	2e-10
B4JTV9	622	Leucine-rich repeat prote	N/A	no	0.5	0.289	0.273	3e-10
Q9LRR5	1424	Putative disease resistan	no	no	0.425	0.107	0.333	3e-10
B4LXW1	614	Leucine-rich repeat prote	N/A	no	0.5	0.293	0.273	4e-10

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score = 80.5 bits (197), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 132/277 (47%), Gaps = 16/277 (5%)

Query: 42  LFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKK 101
           + SI       S+  S + K   LRVL+L +S +  LP  IG+L H+RYLDLS   +I+ 
Sbjct: 504 MMSIGFAEVVSSYSPSLLQKFVSLRVLNLRNSNLNQLPSSIGDLVHLRYLDLSGNFRIRN 563

Query: 102 LPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRS 161
           LP  +C+LQ+LQTL L  C  L  LPK    L SLR  ++     +     I  L+ L+S
Sbjct: 564 LPKRLCKLQNLQTLDLHYCDSLSCLPKQTSKLGSLRNLLLDGCSLTSTPPRIGLLTCLKS 623

Query: 162 LIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLN 221
           L    C+ +     H  QL  L++L L    S+  L    K   + E  +       +L 
Sbjct: 624 L---SCFVIGKRKGH--QLGELKNLNLYGSISITKLDRVKKDTDAKEANLSAKANLHSLC 678

Query: 222 LNIEMEGEGSHHDRD-----NTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDC 276
           L+ +++G+   +D +        ++L+ L ++G    + LP W+ Q   K +  + I  C
Sbjct: 679 LSWDLDGK-HRYDSEVLEALKPHSNLKYLEINGFGG-IRLPDWMNQSVLKNVVSIRIRGC 736

Query: 277 PNFMALQ--GSLKDLEALETLLISACRKLSSLPEDIH 311
            N   L   G L  LE+LE  L +    +  + +++H
Sbjct: 737 ENCSCLPPFGELPCLESLE--LHTGSADVEYVEDNVH 771

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.
Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 132/285 (46%), Gaps = 28/285 (9%)

Query: 84  NLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELP--KDIRYLVSLRMFVV 141
           NLK++  +D   +C    + +S+  L+++ ++++ GC     LP   ++  L SL +   
Sbjct: 712 NLKYLEIIDFCGFCLPDWMNHSV--LKNVVSILISGCENCSCLPPFGELPCLESLELQDG 769

Query: 142 TTKQKSLQESGIAC---LSSLRSLIISHCWNLEYLFEHIG--QLSGLRSLILVDCPSLIS 196
           + + + +++SG        SLR L I    NL+ L    G  Q   L  + + DCP  + 
Sbjct: 770 SVEVEYVEDSGFLTRRRFPSLRKLHIGGFCNLKGLQRMKGAEQFPVLEEMKISDCPMFV- 828

Query: 197 LP--SAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLF-------- 246
            P  S+VK L   E     D   L+   N+               + L+++F        
Sbjct: 829 FPTLSSVKKL---EIWGEADAGGLSSISNLSTLTSLKIFSNHTVTSLLEEMFKNLENLIY 885

Query: 247 --VSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMAL-QGSLKDLEALETLLISACRKL 303
             VS L+ L +LP  L   S   L+ L I  C    +L +  L+ L +L  L +  C  L
Sbjct: 886 LSVSFLENLKELPTSL--ASLNNLKCLDIRYCYALESLPEEGLEGLSSLTELFVEHCNML 943

Query: 304 SSLPEDIHHLTTLKTLSIKECPALWERCKPLTGEDWSKIARIPRI 348
             LPE + HLTTL +L I+ CP L +RC+   GEDW KI+ IP +
Sbjct: 944 KCLPEGLQHLTTLTSLKIRGCPQLIKRCEKGIGEDWHKISHIPNV 988

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/127 (40%), Positives = 69/127 (54%), Gaps = 8/127 (6%)

Query: 17  SFVSASASRNDFSSL-LSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTI 75
           S  SASAS  +   + + D +   +I F+    + S S     +S    LRVL+L  S +
Sbjct: 484 SLFSASASCGNIREINVKDYKHTVSIGFAAVVSSYSPSLLKKFVS----LRVLNLSYSKL 539

Query: 76  EVLPREIGNLKHMRYLDLSRYC-QIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLV 134
           E LP  IG+L H+RYLDLS  C   + LP  +C+LQ+LQTL +  C  L  LPK    L 
Sbjct: 540 EQLPSSIGDLLHLRYLDLS--CNNFRSLPERLCKLQNLQTLDVHNCYSLNCLPKQTSKLS 597

Query: 135 SLRMFVV 141
           SLR  VV
Sbjct: 598 SLRHLVV 604

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|B5DX45|SUR8_DROPS Leucine-rich repeat protein soc-2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=Sur-8 PE=3 SV=1

 Score = 69.3 bits (168), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 98/205 (47%), Gaps = 25/205 (12%)

Query: 17  SFVSASASRNDFSSLLSDLRRVRTILFSIN-DENTSESFFTSCISKSQFLRVLDLDDSTI 75
              + + SRN F+S  +      T ++SIN + N  +       S+++ L  L++ ++ +
Sbjct: 380 GLTTITLSRNQFTSYPTGGPAQFTNVYSINLEHNRIDKIPYGIFSRAKGLTKLNMKENML 439

Query: 76  EVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCL-------------- 121
             LP +IG   +M  L+L+    ++KLP+ I  LQ+L+ LIL   +              
Sbjct: 440 TALPLDIGTWVNMVELNLATNA-LQKLPDDIMNLQNLEILILSNNMLKKIPNTIGNMRKL 498

Query: 122 --------KLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYL 173
                   ++E LP +I  L  L+  ++ T Q ++    I  LS+L  L +S   NL++L
Sbjct: 499 RILDLEENRIEVLPHEIGLLHELQRLILQTNQITMLPRSIGHLSNLTHLSVSEN-NLQFL 557

Query: 174 FEHIGQLSGLRSLILVDCPSLISLP 198
            E IG L GL +L +   P L  LP
Sbjct: 558 PEEIGSLEGLENLYINQNPGLEKLP 582

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 94/196 (47%), Gaps = 19/196 (9%)

Query: 156 LSSLRSLIISHCWNLEYLFEHIG--QLSGLRSLILVDCPSLISLPSAVKCLSSSETLILI 213
             SLR L I    +L+ L +  G  Q   L  +I+ +CP  ++L S ++ L+S    + I
Sbjct: 787 FPSLRKLDIWDFGSLKGLLKKEGEEQFPVLEEMIIHECP-FLTLSSNLRALTS----LRI 841

Query: 214 DCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGI 273
               +  +   EM              +L+ L +S    L +LP  L   S   L+ L I
Sbjct: 842 CYNKVATSFPEEM---------FKNLANLKYLTISRCNNLKELPTSL--ASLNALKSLKI 890

Query: 274 EDCPNFMAL-QGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPALWERCK 332
           + C    +L +  L+ L +L  L +  C  L  LPE + HLTTL +L I+ CP L +RC+
Sbjct: 891 QLCCALESLPEEGLEGLSSLTELFVEHCNMLKCLPEGLQHLTTLTSLKIRGCPQLIKRCE 950

Query: 333 PLTGEDWSKIARIPRI 348
              GEDW KI+ IP +
Sbjct: 951 KGIGEDWHKISHIPNV 966

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 145/328 (44%), Gaps = 37/328 (11%)

Query: 9   IPKRVRHLSFVSASASRNDFSSLLSDLRRVRTIL-FSIN--------DENTSESFFTSCI 59
           + +R R+LS++  + +       L +++ +RT L  S+         D+  SE    +  
Sbjct: 519 VSERTRYLSYLRDNYAEPMEFEALREVKFLRTFLPLSLTNSSRSCCLDQMVSEKLLPTLT 578

Query: 60  SKSQFLRVLDLDDSTIEVLPREI-GNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILR 118
                LRVL L    I  LP +   N+ H R+LDLSR  +++KLP S+C + +LQTL+L 
Sbjct: 579 R----LRVLSLSHYKIARLPPDFFKNISHARFLDLSR-TELEKLPKSLCYMYNLQTLLLS 633

Query: 119 GCLKLEELPKDIRYLVSLRMF-VVTTKQKSLQE--SGIACLSSLRSLIISHCWNLEYLFE 175
            C  L+ELP DI  L++LR   ++ TK + +      +  L +L +  +S          
Sbjct: 634 YCSSLKELPTDISNLINLRYLDLIGTKLRQMPRRFGRLKSLQTLTTFFVSASDG-----S 688

Query: 176 HIGQLSGLR----SLILVDCPSLISLPSAVKC-LSSSETLILID-------CKSLNLNLN 223
            I +L GL      L +V+   ++ +  A +  L+S + L  ID         S N    
Sbjct: 689 RISELGGLHDLHGKLKIVELQRVVDVADAAEANLNSKKHLREIDFVWRTGSSSSENNTNP 748

Query: 224 IEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQ 283
              + E    ++     H++KL +   K     P WL   S   +  + + +C    +L 
Sbjct: 749 HRTQNEAEVFEKLRPHRHIEKLAIERYKG-RRFPDWLSDPSFSRIVCIRLRECQYCTSLP 807

Query: 284 GSLKDLEALETLLISACRKLSSLPEDIH 311
            SL  L  L+ L IS    L S+    +
Sbjct: 808 -SLGQLPCLKELHISGMVGLQSIGRKFY 834

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1L8Y7|SHOC2_DANRE Leucine-rich repeat protein SHOC-2 OS=Danio rerio GN=shoc2 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 93/206 (45%), Gaps = 25/206 (12%)

Query: 16  LSFVSASASRNDFSSLLSDLRRVRTILFSINDE-NTSESFFTSCISKSQFLRVLDLDDST 74
           ++  S + +RN F S         + ++S+N E N          S+++ L  L++ D+ 
Sbjct: 310 VNLTSLTLARNCFQSYPVGGPSQFSTIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKDNQ 369

Query: 75  IEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCL------------- 121
           +  LP + G    M  L+L+   Q+ K+P  IC L SL+ L L   L             
Sbjct: 370 LTSLPLDFGTWTSMVELNLATN-QLTKIPEDICGLVSLEMLTLSNNLLKKLPYGIGNLRK 428

Query: 122 ---------KLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEY 172
                    KLE LP +I YL  L+  V+T  Q +    GI  L++L  L +     L++
Sbjct: 429 LRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGIGHLTNLTYLGLGENL-LQH 487

Query: 173 LFEHIGQLSGLRSLILVDCPSLISLP 198
           L E IG L  L  L L D P+L SLP
Sbjct: 488 LPEEIGTLENLEDLYLNDNPNLHSLP 513

Regulatory subunit of protein phosphatase 1 (PP1c) that acts as a M-Ras/MRAS effector and participates in MAPK pathway activation. Upon M-Ras/MRAS activation, targets PP1c to specifically dephosphorylate the 'Ser-259' inhibitory site of raf1 kinase and stimulate raf1 activity at specialized signaling complexes.

Danio rerio (taxid: 7955)

>sp|B4JTV9|SUR8_DROGR Leucine-rich repeat protein soc-2 homolog OS=Drosophila grimshawi GN=Sur-8 PE=3 SV=1

 Score = 66.6 bits (161), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 98/205 (47%), Gaps = 25/205 (12%)

Query: 17  SFVSASASRNDFSSLLSDLRRVRTILFSIN-DENTSESFFTSCISKSQFLRVLDLDDSTI 75
           +  S + SRN F+S  +      T ++SIN + N  +       S+++ L  L++ ++ +
Sbjct: 373 ALTSITLSRNQFTSYPTGGPAQFTNVYSINLEHNRIDKIPYGIFSRAKGLTKLNMKENML 432

Query: 76  EVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCL-------------- 121
             LP ++G   +M  L+L+    ++KLP+ I  LQ+L+ LIL   +              
Sbjct: 433 TALPLDVGTWVNMVELNLATNA-LQKLPDDIMNLQNLEILILSNNMLKKIPNTIGNLRKL 491

Query: 122 --------KLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYL 173
                   ++E LP +I  L  L+  ++ T Q ++    +  LS+L  L +S   NL++L
Sbjct: 492 RILDLEENRIEVLPHEIGLLHELQRLILQTNQITMLPRSVGHLSNLTHLSVSEN-NLQFL 550

Query: 174 FEHIGQLSGLRSLILVDCPSLISLP 198
            E IG L  L +L +   P L  LP
Sbjct: 551 PEEIGSLESLENLYINQNPGLEKLP 575

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Drosophila grimshawi (taxid: 7222)

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score = 66.6 bits (161), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 75/159 (47%), Gaps = 6/159 (3%)

Query: 9   IPKRVRHLSFVSASASRNDFSSLLSDLRRVRTIL-----FSINDENTSESFFTSCISKSQ 63
           IP   RH SF  +    +     +     +RTIL      S+     +E      ++   
Sbjct: 514 IPSTTRHFSFSRSQCDASVAFRSICGAEFLRTILPFNSPTSLESLQLTEKVLNPLLNALS 573

Query: 64  FLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKL 123
            LR+L L    I  LP+ +  LK +RYLDLS   +IK+LP  +C L +LQTL+L  C  L
Sbjct: 574 GLRILSLSHYQITNLPKSLKGLKLLRYLDLSS-TKIKELPEFVCTLCNLQTLLLSNCRDL 632

Query: 124 EELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSL 162
             LPK I  L++LR+  +          GI  L SL+ L
Sbjct: 633 TSLPKSIAELINLRLLDLVGTPLVEMPPGIKKLRSLQKL 671

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|B4LXW1|SUR8_DROVI Leucine-rich repeat protein soc-2 homolog OS=Drosophila virilis GN=Sur-8 PE=3 SV=1

 Score = 66.2 bits (160), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 98/205 (47%), Gaps = 25/205 (12%)

Query: 17  SFVSASASRNDFSSLLSDLRRVRTILFSIN-DENTSESFFTSCISKSQFLRVLDLDDSTI 75
           +  + + SRN F+S  +      T ++SIN + N  +       S+++ L  L++ ++ +
Sbjct: 365 ALTTITLSRNQFTSYPTGGPAQFTNVYSINLEHNRIDKIPYGIFSRAKGLTKLNMKENML 424

Query: 76  EVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCL-------------- 121
             LP ++G   +M  L+L+    ++KLP+ I  LQ+L+ LIL   +              
Sbjct: 425 TALPLDVGTWVNMVELNLATNA-LQKLPDDIMNLQNLEILILSNNMLKKIPNTIGNLRKL 483

Query: 122 --------KLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYL 173
                   ++E LP +I  L  L+  ++ T Q ++    I  LS+L  L +S   NL++L
Sbjct: 484 RILDLEENRIEVLPHEIGLLHELQRLILQTNQITMLPRSIGHLSNLTHLSVSEN-NLQFL 542

Query: 174 FEHIGQLSGLRSLILVDCPSLISLP 198
            E IG L  L +L +   P L  LP
Sbjct: 543 PEEIGSLESLENLYINQNPGLEKLP 567

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Drosophila virilis (taxid: 7244)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
225441815	874	PREDICTED: putative disease resistance p	0.905	0.372	0.435	5e-69
147777286	815	hypothetical protein VITISV_009157 [Viti	0.858	0.379	0.461	7e-68
255577491	860	leucine-rich repeat containing protein,	0.919	0.384	0.443	3e-65
356570433	856	PREDICTED: disease resistance protein RG	0.941	0.396	0.435	2e-64
356571981	754	PREDICTED: disease resistance protein RG	0.941	0.449	0.427	3e-62
224120592	836	nbs-lrr resistance protein [Populus tric	0.877	0.377	0.405	1e-61
351720930	863	disease resistance protein [Glycine max]	0.947	0.395	0.427	1e-60
359491491	845	PREDICTED: disease resistance protein RG	0.916	0.390	0.412	1e-60
356570458	857	PREDICTED: disease resistance protein RG	0.941	0.395	0.421	2e-60
351725809	909	NBS-LRR disease resistance protein [Glyc	0.916	0.363	0.427	3e-60

>gi|225441815|ref|XP_002277987.1| PREDICTED: putative disease resistance protein RGA3-like [Vitis vinifera]

 Score =  267 bits (683), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 146/335 (43%), Positives = 213/335 (63%), Gaps = 9/335 (2%)

Query: 30  SLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMR 89
           +LL +   +RTI F  ++ N +  +  +C S+ +++RVLDL  +  E LP  IGN+KH+R
Sbjct: 544 ALLQEKNNIRTIWFPYSEINATAEYVGTCSSRFKYMRVLDLRGTDFEELPSSIGNMKHLR 603

Query: 90  YLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSL- 148
           YLD+    ++KKLP SIC+L  L TL  + C +LEELP+D+   +SLR   +TTKQ++  
Sbjct: 604 YLDICGNKRVKKLPASICKLYLLLTLSFKECTELEELPRDMGNFISLRFLAITTKQRAWP 663

Query: 149 -QESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSS 207
            + +G+ACL SLR L+I+ C ++E++FE +  L+ LRSL +  CPSL+SLP +VK L + 
Sbjct: 664 RKGNGLACLISLRWLLIAECNHVEFMFEGLQNLTALRSLEIRRCPSLVSLPPSVKHLPAL 723

Query: 208 ETLILIDCKSLNLNLNIEMEGEG-SHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQG-ST 265
           ETL++ +C+  N      M+ +G   +D       L+ L V  L +L  LP WL+QG + 
Sbjct: 724 ETLMIFNCEMFNF-----MDEDGDEENDIQGISCRLRSLMVVDLPKLEALPGWLIQGLAA 778

Query: 266 KTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECP 325
            TL +L I  C  F AL  SL++L +L+ L I  C +LS+L   +H LTTLK LSI++CP
Sbjct: 779 STLHYLLIRRCHKFKALPESLENLTSLQELRIDDCPQLSTLSGGMHRLTTLKVLSIRDCP 838

Query: 326 ALWERCKPLTGEDWSKIARIPRIMLDDEMTKSSDN 360
            L +RCKP  GEDW KIA +P I +D E  KS+ N
Sbjct: 839 ELSKRCKPEIGEDWHKIAHVPEIYIDGEAIKSTTN 873

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777286|emb|CAN69089.1| hypothetical protein VITISV_009157 [Vitis vinifera]

 Score =  263 bits (673), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 154/334 (46%), Positives = 205/334 (61%), Gaps = 25/334 (7%)

Query: 30  SLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMR 89
           +LL  + ++RTILF  N   TS SF T+C SK +++R LDL DS+ EVLP  IGN+KH+R
Sbjct: 503 TLLQKITKLRTILFR-NGGATSLSFVTTCASKFKYMRYLDLSDSSFEVLPSSIGNMKHLR 561

Query: 90  YLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQ 149
           YL L R  +IKKLP SIC+L  LQTLIL  C +LEELP+D+  L++L    +TTKQ++L 
Sbjct: 562 YLSLLRNKRIKKLPASICKLYHLQTLILAECSELEELPRDMGNLINLMFLSITTKQRALS 621

Query: 150 --ESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSS 207
             E+G+ CL SLRSL+I  C NLE++FE +  L+ LR+L++V CPSL+SL +        
Sbjct: 622 GTENGLXCLISLRSLLIYACNNLEFIFEGMQNLTALRTLVIVGCPSLVSLAN-------- 673

Query: 208 ETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKT 267
                         LN+      S  D   + + L    +  L QL  LPQWL QG T +
Sbjct: 674 -------------KLNLXDGDGDSEDDIQGSSSRLCTFIIGALPQLEALPQWLXQGPTXS 720

Query: 268 -LQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPA 326
            L  LGI  C NF  L  SL++L +L+ L I  C +LS+L E +H LTTLK LSI +CP 
Sbjct: 721 NLHCLGINGCHNFKGLPESLENLTSLQELRIGDCPQLSTLXEGMHRLTTLKVLSIDDCPE 780

Query: 327 LWERCKPLTGEDWSKIARIPRIMLDDEMTKSSDN 360
           L +RC P  GEDW +IA +P I +D E  K + N
Sbjct: 781 LSKRCMPKIGEDWHRIAHVPEINIDGESIKWTTN 814

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577491|ref|XP_002529624.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223530909|gb|EEF32769.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  254 bits (650), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 152/343 (44%), Positives = 212/343 (61%), Gaps = 12/343 (3%)

Query: 11  KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDL 70
           KRVRHL+F        D   L  DL  V+TIL +      S+S    CIS  Q LRVLDL
Sbjct: 524 KRVRHLTFFDPEVLSKDPRKLFHDLDHVQTILIA----GVSKSLAQVCISGFQNLRVLDL 579

Query: 71  DDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDI 130
             ST EVLPR IG LKH+RYLDL+   +I++LP+SIC LQSLQTLIL GC +LE LP+++
Sbjct: 580 AWSTFEVLPRSIGTLKHLRYLDLTNNVKIRRLPSSICNLQSLQTLILSGCEELEGLPRNM 639

Query: 131 RYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEH-IG-QLSGLRSLIL 188
           + ++SL    +T K + L  + I CL SLR+L I  C NLE+LF+  IG  L  LR+L++
Sbjct: 640 KCMISLSFLWITAKLRFLPSNRIGCLQSLRTLGIGGCGNLEHLFDDMIGLNLIALRTLVV 699

Query: 189 VDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVS 248
             C +LI LP  +K L++ E L +  C++L+L ++      G+  D ++    L+ L + 
Sbjct: 700 GGCRNLIYLPHDIKYLTALENLTIATCENLDLLID------GNVVDNEHCGFKLKTLSLH 753

Query: 249 GLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPE 308
            L  L+ LP+WLLQ S  +L+ + I  C N + L   L+D  +L+ L I  C  LSSLP 
Sbjct: 754 ELPLLVALPRWLLQWSACSLESIAIWRCHNLVMLPEWLQDFISLQKLDILGCPGLSSLPI 813

Query: 309 DIHHLTTLKTLSIKECPALWERCKPLTGEDWSKIARIPRIMLD 351
            +H LT+L+ L++++CPAL E C P TG+DW +IA +  I LD
Sbjct: 814 GLHRLTSLRKLTVEDCPALAESCNPETGKDWPQIAHVSEIYLD 856

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570433|ref|XP_003553392.1| PREDICTED: disease resistance protein RGA2-like [Glycine max]

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 153/351 (43%), Positives = 209/351 (59%), Gaps = 12/351 (3%)

Query: 1   MLNSDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTS-ESFFTSCI 59
           ++ S  Q+IP+ +RHLSF   +   N F+S       VRTI+F    E  + E+   +C+
Sbjct: 505 LIKSHIQNIPEIIRHLSFAEYNFIGNSFTS---KSVAVRTIMFPNGAEGANVEALLNTCV 561

Query: 60  SKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRG 119
           SK + LRVLDL DST   LPR IG LKH+RY  +     IK+LPNSIC+LQ+LQ L + G
Sbjct: 562 SKFKLLRVLDLRDSTCNTLPRSIGKLKHLRYFSIENNRNIKRLPNSICKLQNLQLLNVSG 621

Query: 120 CLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQ 179
           C +LE LPK +R L+SLR+  +TTKQ  L  S I  L SL  L IS   N+E +F  + +
Sbjct: 622 CEELEALPKGLRKLISLRLLEITTKQPVLPYSEITNLISLAHLCISSSHNMESIFGGV-K 680

Query: 180 LSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTR 239
              L++L +VDC SL SLP  V      ETL++ DC +L+L+L  E      HH+  N +
Sbjct: 681 FPALKTLYVVDCHSLKSLPLDVTNFPELETLVVQDCVNLDLDLWKE------HHEEQNPK 734

Query: 240 THLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISA 299
             L+ +   GL QL+ LPQW LQ +  +LQ L I++C N   L   L  L  L+ L I A
Sbjct: 735 LRLKFVAFVGLPQLVALPQW-LQETANSLQSLAIKNCDNLEMLPEWLSTLTNLKVLHILA 793

Query: 300 CRKLSSLPEDIHHLTTLKTLSIKECPALWERCKPLTGEDWSKIARIPRIML 350
           C +L SLP++IHHLT L+ L I  CP L  + +P  GE WSKI+ I  +++
Sbjct: 794 CPELISLPDNIHHLTALERLRIAYCPELRRKYQPHVGEFWSKISHIKEVLI 844

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571981|ref|XP_003554149.1| PREDICTED: disease resistance protein RGA2-like [Glycine max]

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 150/351 (42%), Positives = 207/351 (58%), Gaps = 12/351 (3%)

Query: 1   MLNSDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTS-ESFFTSCI 59
           ++ S  Q+IP+ +RHLSF   +   N F+S       VRTI+F    E  S E+   +C+
Sbjct: 403 LVKSHIQNIPENIRHLSFAEYNFLGNSFTS---KSVAVRTIMFRNGAEGGSVEALLNTCV 459

Query: 60  SKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRG 119
           SK + LRVLDL DS  + LPR IG LKH+RY  +     IK+LPNSIC+LQ+LQ L + G
Sbjct: 460 SKFKLLRVLDLRDSKCKTLPRSIGKLKHLRYFSIENNRNIKRLPNSICKLQNLQLLNVSG 519

Query: 120 CLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQ 179
           C +LE LPK +R L+SLR+  +TTKQ  L  S I  L SL  L I    N+E +F  + +
Sbjct: 520 CEELEALPKGLRKLISLRLLEITTKQPVLPYSEITNLISLAHLSIESSHNMESIFGGV-K 578

Query: 180 LSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTR 239
              L++L + DC SL SLP  V      ETLI+ DC +L+L+L         HH+  +  
Sbjct: 579 FPALKTLYVADCHSLKSLPLDVTNFPELETLIVHDCVNLDLDL------WKDHHEEQSPM 632

Query: 240 THLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISA 299
             L+ + + GL QL+ LPQW LQ +  +LQ LGI +C N   L   L  +  L++L+IS 
Sbjct: 633 LKLKCVGLGGLPQLVALPQW-LQETANSLQSLGIINCDNLEMLPEWLSTMTNLKSLVISD 691

Query: 300 CRKLSSLPEDIHHLTTLKTLSIKECPALWERCKPLTGEDWSKIARIPRIML 350
           C +L SLP++IHHLT L+ L I  CP L  + +P  GE WSKI+ I  + +
Sbjct: 692 CPELISLPDNIHHLTALERLRIAYCPELCRKYQPHVGEFWSKISHIKEVFI 742

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120592|ref|XP_002318368.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222859041|gb|EEE96588.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 143/353 (40%), Positives = 205/353 (58%), Gaps = 37/353 (10%)

Query: 1   MLNSDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILF-SINDENTSESFFTSCI 59
           ++ ++ + I K V+H+S     + R DF  L  +L +VRT+   S  D   S S   +C+
Sbjct: 513 VVTANSKRIEKSVQHISIPDPDSVRQDFPMLSKELDQVRTVFIHSDKDVLASNSILETCL 572

Query: 60  SKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRG 119
           S+ ++LR L+L  S  + LP++IG LKH+RYLDLS   +IK+LPNSIC+LQ+LQTL L G
Sbjct: 573 SRFKYLRALNLSRSQFKELPKKIGKLKHLRYLDLSWNHRIKRLPNSICKLQNLQTLFLGG 632

Query: 120 CLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQ 179
           C ++EELP+ +RY+ SLR   + T+Q SL    I CL SLR L I+ C NLE LFE +  
Sbjct: 633 CDEIEELPRGMRYMESLRFLWLATRQTSLPRDEIGCLKSLRFLWIATCENLERLFEDMEN 692

Query: 180 LSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTR 239
           LS LRSL +V CPSL SLP ++K L+S + L +  C +LN              +++   
Sbjct: 693 LSALRSLYIVTCPSLNSLPPSIKYLTSLQDLHISGCVALNF------------PNQEACE 740

Query: 240 THLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISA 299
             L+KL +  L+ + +LP+WL++GS  TL+ L +E CP  + L   LK   AL+ L I  
Sbjct: 741 FKLKKLVLCFLEAVEELPEWLIRGSADTLKNLKLEFCPALLELPACLKTFSALQELRILG 800

Query: 300 CRKLSSLPEDIHHLTTLKTLSIKECPALWERCKPLTGEDWSKIARIPRIMLDD 352
                                   CP L ERC   TG+DW KIARIP++++D+
Sbjct: 801 ------------------------CPRLAERCDRETGDDWEKIARIPKVIVDN 829

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720930|ref|NP_001235657.1| disease resistance protein [Glycine max] gi|223452597|gb|ACM89625.1| disease resistance protein [Glycine max]

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 151/353 (42%), Positives = 204/353 (57%), Gaps = 12/353 (3%)

Query: 1   MLNSDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTS-ESFFTSCI 59
           ++NS  Q+IP  + HLSF   +   N F+S       VRTI+F    E  S ES   +C+
Sbjct: 521 LVNSHTQNIPDNILHLSFAEYNFLGNSFTS---KSVAVRTIIFPNGAEGGSVESLLNTCV 577

Query: 60  SKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRG 119
           SK + LRVLDL DST + LPR IG LKH+RY  +     I++LPNSIC+LQ+LQ L + G
Sbjct: 578 SKFKLLRVLDLKDSTCKTLPRSIGKLKHLRYFSIENNRNIERLPNSICKLQNLQLLNVWG 637

Query: 120 CLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQ 179
           C KLE LPK +  L+SLR+  +TTKQ  L  S I  L SL  L I   +N+E +F  + +
Sbjct: 638 CKKLEALPKGLGKLISLRLLWITTKQPVLPYSEITNLISLAHLYIGSSYNMESIFGRV-K 696

Query: 180 LSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTR 239
           L  L++L +  C SL SL   V      ETLI++ C +L+L+L  E      HH+  N +
Sbjct: 697 LPALKTLNVAYCDSLKSLTLDVTNFPELETLIVVACVNLDLDLWKE------HHEERNGK 750

Query: 240 THLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISA 299
             L+ L    L QL+ LPQW LQ +  +LQ L I  C N   L   L  +  L+ LLIS 
Sbjct: 751 LKLKLLGFRDLPQLVALPQW-LQETANSLQSLRISGCDNLEILPEWLSTMTNLKVLLISD 809

Query: 300 CRKLSSLPEDIHHLTTLKTLSIKECPALWERCKPLTGEDWSKIARIPRIMLDD 352
           C KL SLP++I HL  L+ L I  CP L  +C+P  GE WSKI+ I  + +++
Sbjct: 810 CPKLISLPDNIDHLAALEWLRIVGCPELCRKCQPHVGEFWSKISHIKEVFIEE 862

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491491|ref|XP_003634282.1| PREDICTED: disease resistance protein RGA2-like [Vitis vinifera]

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 150/364 (41%), Positives = 201/364 (55%), Gaps = 34/364 (9%)

Query: 1   MLNSDCQSIPKRVRHLSFVSASASRNDFSSL--LSDLRRVRTILFSI-NDENTSESFFTS 57
           +LN   + IPKRV+H +F      + +  +L  L  L  V TI F + N    SESF  +
Sbjct: 508 ILNFHSKDIPKRVQHAAFSDTEWPKEECKALKFLEKLNNVHTIYFQMKNVAPRSESFVKA 567

Query: 58  CISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLIL 117
           CI + + +R+LDL DS  E LP+ IG+LKH+R+LDLS   +IKKLPNSIC+L  LQ L L
Sbjct: 568 CILRFKCIRILDLQDSNFEALPKSIGSLKHLRFLDLSGNKRIKKLPNSICKLYHLQALSL 627

Query: 118 RGCLKLEELPKDIRYLVSLRMFVVTTKQKSL--QESGIACLSSLRSLIISHCWNLEYLFE 175
             C +LEELP+ I  ++SLRM  +T KQ+ L  +E G+  L+SL+ L I  C NLE+L +
Sbjct: 628 SRCSELEELPRGIGSMISLRMVSITMKQRDLFGKEKGLRSLNSLQRLEIVDCLNLEFLSK 687

Query: 176 HIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDR 235
            +  L  LR L++ DCPSL+SL   +K L++ E L + +C+ L       M+GE    + 
Sbjct: 688 GMESLIELRMLVITDCPSLVSLSHGIKLLTALEVLAIGNCQKLE-----SMDGEAEGQED 742

Query: 236 DNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETL 295
             +   LQ LF   L QL  LP+WLL   T                          L  L
Sbjct: 743 IQSFGSLQILFFDNLPQLEALPRWLLHEPTSN-----------------------TLHHL 779

Query: 296 LISACRKLSSLPED-IHHLTTLKTLSIKECPALWERCKPLTGEDWSKIARIPRIMLDDEM 354
            IS C  L +LP + +  L +LK L I +CP L +RCKP TGEDW KIA IP I  D   
Sbjct: 780 KISQCSNLKALPANGLQKLASLKKLEIDDCPELIKRCKPKTGEDWQKIAHIPEIYFDGRE 839

Query: 355 TKSS 358
             SS
Sbjct: 840 IASS 843

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570458|ref|XP_003553404.1| PREDICTED: disease resistance protein RGA2-like [Glycine max]

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 148/351 (42%), Positives = 203/351 (57%), Gaps = 12/351 (3%)

Query: 1   MLNSDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTS-ESFFTSCI 59
           ++NS  Q+IP+ +RHLSF   S+  N F+S       VR+I+     E  + E+   +C+
Sbjct: 506 LVNSHVQNIPENIRHLSFAEFSSLGNSFTS---KSVAVRSIMIPNGAEGANVEALLNTCV 562

Query: 60  SKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRG 119
           SK + LRVLDL DST + LPR IG LKH+R   +     IK+LPNSIC+LQ+LQ L +  
Sbjct: 563 SKFKLLRVLDLRDSTCKTLPRSIGKLKHLRSFSIQNNPNIKRLPNSICKLQNLQFLSVLR 622

Query: 120 CLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQ 179
           C +LE LPK  R L+ LR   +TTKQ  L  + I  L SL  L I  C N+E +F  + +
Sbjct: 623 CKELEALPKGFRKLICLRHLGITTKQPVLPYTEITNLISLELLSIESCHNMESIFGGV-K 681

Query: 180 LSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTR 239
              L++L +  C SL SLP  V      ETL + DC +L+L+L  E      HH+  N +
Sbjct: 682 FPALKALNVAACHSLKSLPLDVINFPELETLTVKDCVNLDLDLWKE------HHEEQNPK 735

Query: 240 THLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISA 299
             L+ +   GL QL+ LPQW LQ +  +L+ L I DC N   L   L  +  L+ LLI  
Sbjct: 736 LRLKYVAFWGLPQLVALPQW-LQETANSLRTLIISDCDNLEMLPEWLSTMTNLKVLLIYG 794

Query: 300 CRKLSSLPEDIHHLTTLKTLSIKECPALWERCKPLTGEDWSKIARIPRIML 350
           C KL SLP++IHHLT L+ L I  CP L ++C+P  GE WSKI+ I  + +
Sbjct: 795 CPKLISLPDNIHHLTALEHLHISGCPELCKKCQPHVGEFWSKISHIKDVFI 845

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725809|ref|NP_001238129.1| NBS-LRR disease resistance protein [Glycine max] gi|212717155|gb|ACJ37419.1| NBS-LRR disease resistance protein [Glycine max]

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 147/344 (42%), Positives = 202/344 (58%), Gaps = 14/344 (4%)

Query: 1   MLNSDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTS-ESFFTSCI 59
           ++NS  Q+IP+ +RHLSF   S   N F+S       VRTI+F    E  + ES   +C+
Sbjct: 504 LVNSHIQNIPENIRHLSFAEYSCLGNSFTS---KSVVVRTIMFPNGAEGGNVESLLNTCV 560

Query: 60  SKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRG 119
           SK + LRVLDL  ST + LPR IG LKH+RY  +     IK+LPNSIC+LQ+LQ L +RG
Sbjct: 561 SKFKLLRVLDLSYSTCKTLPRSIGKLKHLRYFSIENNRNIKRLPNSICKLQNLQLLSVRG 620

Query: 120 CLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQ 179
           C KL+ LPK +R L+SLR   +TTKQ  L  S I  L +L  L I+   N+E +   + +
Sbjct: 621 CKKLKALPKALRKLISLRHLKITTKQPVLPYSEITNLITLAHLYIASSHNMESILGGV-K 679

Query: 180 LSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTR 239
              L++L +VDC SL SLP  V      ETL ++DC      +N+++E     H+  N +
Sbjct: 680 FPALKTLYVVDCHSLKSLPLDVTNFPELETLFVVDC------VNLDLELWKDDHEEQNPK 733

Query: 240 THLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISA 299
             L+ +   GL QL+ LPQW LQ +  +LQ L I++C N   L   L  L  L+ L IS 
Sbjct: 734 LKLKYVAFWGLPQLVALPQW-LQETANSLQTLFIKNCDNLEMLPEWLSTLTNLKALEISD 792

Query: 300 CRKLSSLPEDIHHLTTLKTLSIKECPALWERCKPLTG--EDWSK 341
           C KL SLP++IHHLT L+ L I  CP L  +C+P  G  ++W +
Sbjct: 793 CPKLISLPDNIHHLTALERLRIVGCPELCRKCQPHVGNYDNWCR 836

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.425	0.107	0.339	1.3e-20
TAIR|locus:2094498	1981	AT3G25510 [Arabidopsis thalian	0.863	0.156	0.287	1.1e-17
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.713	0.216	0.281	6.7e-16
TAIR|locus:2147992	1189	AT5G11250 [Arabidopsis thalian	0.697	0.211	0.283	5.8e-13
TAIR|locus:2205804	1556	AT1G27180 [Arabidopsis thalian	0.775	0.179	0.263	8.1e-13
TAIR|locus:2098110	1219	AT3G44670 [Arabidopsis thalian	0.636	0.187	0.268	1e-12
TAIR|locus:2091672	1054	AT3G14470 [Arabidopsis thalian	0.816	0.278	0.270	1.3e-12
TAIR|locus:2205824	1384	AT1G27170 [Arabidopsis thalian	0.827	0.215	0.266	2.1e-11
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.433	0.120	0.355	7.1e-11
FB|FBgn0038504	641	Sur-8 "Sur-8" [Drosophila mela	0.438	0.246	0.304	1.7e-08

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
 Identities = 54/159 (33%), Positives = 76/159 (47%)

Query:     9 IPKRVRHLSFVSASASRNDFSSLLSDLRRVRTIL-F----SINDENTSESFFTSCISKSQ 63
             IP   RH SF  +    +     +     +RTIL F    S+     +E      ++   
Sbjct:   514 IPSTTRHFSFSRSQCDASVAFRSICGAEFLRTILPFNSPTSLESLQLTEKVLNPLLNALS 573

Query:    64 FLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKL 123
              LR+L L    I  LP+ +  LK +RYLDLS   +IK+LP  +C L +LQTL+L  C  L
Sbjct:   574 GLRILSLSHYQITNLPKSLKGLKLLRYLDLSS-TKIKELPEFVCTLCNLQTLLLSNCRDL 632

Query:   124 EELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSL 162
               LPK I  L++LR+  +          GI  L SL+ L
Sbjct:   633 TSLPKSIAELINLRLLDLVGTPLVEMPPGIKKLRSLQKL 671

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 95/331 (28%), Positives = 152/331 (45%)

Query:     1 MLNSDCQSI---PKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTS 57
             M +S C ++    K +R+L ++  S S +     L DL     +   I     S     S
Sbjct:   648 MPSSTCHTLWEGSKALRNLKWMDLSYSIS--LKELPDLSTATNLEELILKYCVSLVKVPS 705

Query:    58 CISKSQFLRVLDLDDST-IEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLI 116
             C+ K   L+VL L   T I  LP    N+  ++ LDL+    + +LP+SI    +LQ L 
Sbjct:   706 CVGKLGKLQVLCLHGCTSILELPSFTKNVTGLQSLDLNECSSLVELPSSIGNAINLQNLD 765

Query:   117 LRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEH 176
             L GCL+L +LP  I    +L+ F++      ++   +   ++L++L + +C +L  L   
Sbjct:   766 L-GCLRLLKLPLSIVKFTNLKKFILNGCSSLVELPFMGNATNLQNLDLGNCSSLVELPSS 824

Query:   177 IGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRD 236
             IG    L++L L +C SL+ LPS +   ++ E L L  C SL     +E+     H    
Sbjct:   825 IGNAINLQNLDLSNCSSLVKLPSFIGNATNLEILDLRKCSSL-----VEIPTSIGHV--- 876

Query:   237 NTRTHLQKLFVSGXXXXXXXXXXXXXGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLL 296
                T+L +L +SG             G+   LQ L + +C N + L  S      L  L 
Sbjct:   877 ---TNLWRLDLSGCSSLVELPSSV--GNISELQVLNLHNCSNLVKLPSSFGHATNLWRLD 931

Query:   297 ISACRKLSSLPEDIHHLTTLKTLSIKECPAL 327
             +S C  L  LP  I ++T L+ L++  C  L
Sbjct:   932 LSGCSSLVELPSSIGNITNLQELNLCNCSNL 962

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 6.7e-16, P = 6.7e-16
 Identities = 77/274 (28%), Positives = 131/274 (47%)

Query:    57 SCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLI 116
             S  +  Q LR+++   S +E LP  IGN  ++  LDL     + KLP+SI  L +L+ L 
Sbjct:   677 STATNLQELRLINCL-SLVE-LPSSIGNATNLLELDLIDCSSLVKLPSSIGNLTNLKKLF 734

Query:   117 LRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQ-ESGIACLSSLRSLIISHCWNLEYLFE 175
             L  C  L +LP     + SL+   ++     L+  S I  + +L+ +    C +L  L  
Sbjct:   735 LNRCSSLVKLPSSFGNVTSLKELNLSGCSSLLEIPSSIGNIVNLKKVYADGCSSLVQLPS 794

Query:   176 HIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDR 235
              IG  + L+ L L++C SL+  PS++  L+  E L L  C SL     +++   G     
Sbjct:   795 SIGNNTNLKELHLLNCSSLMECPSSMLNLTRLEDLNLSGCLSL-----VKLPSIG----- 844

Query:   236 DNTRTHLQKLFVSGXXXXXXXXXXXXXGSTKTLQFLGIEDCPNFMALQGSLKDLEALETL 295
              N   +LQ L++S               +   L  L ++ C N + L  S+ ++  L++L
Sbjct:   845 -NV-INLQSLYLSDCSSLMELPFTIENATN--LDTLYLDGCSNLLELPSSIWNITNLQSL 900

Query:   296 LISACRKLSSLPEDIHHLTTLKTLSIKECPALWE 329
              ++ C  L  LP  + +   L++LS+ +C +L E
Sbjct:   901 YLNGCSSLKELPSLVENAINLQSLSLMKCSSLVE 934

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 5.8e-13, P = 5.8e-13
 Identities = 75/265 (28%), Positives = 124/265 (46%)

Query:    63 QFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLK 122
             +FL  L+L  S +++L   +  L ++R +DLS    +K+LP+    + +L+ LIL  C  
Sbjct:   653 EFLIELNLTHSKLDMLWEGVKPLHNLRQMDLSYSVNLKELPDLSTAI-NLRKLILSNCSS 711

Query:   123 LEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSG 182
             L +LP  I   ++L    +      ++        +L+ L++ +C NL  L   IG    
Sbjct:   712 LIKLPSCIGNAINLEDLDLNGCSSLVELPSFGDAINLQKLLLRYCSNLVELPSSIGNAIN 771

Query:   183 LRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHL 242
             LR L L  C SLI LPS++    ++  L+++D    + NL   +E   S  +  N    L
Sbjct:   772 LRELDLYYCSSLIRLPSSI---GNAINLLILDLNGCS-NL---LELPSSIGNAIN----L 820

Query:   243 QKLFVSGXXXXXXXXXXXXXGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRK 302
             QKL +               G+   LQ L ++DC + + L  S+ +   L  + +S C  
Sbjct:   821 QKLDLR--RCAKLLELPSSIGNAINLQNLLLDDCSSLLELPSSIGNATNLVYMNLSNCSN 878

Query:   303 LSSLPEDIHHLTTLKTLSIKECPAL 327
             L  LP  I +L  L+ L +K C  L
Sbjct:   879 LVELPLSIGNLQKLQELILKGCSKL 903

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2205804 AT1G27180 [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 8.1e-13, P = 8.1e-13
 Identities = 80/304 (26%), Positives = 132/304 (43%)

Query:    33 SDLRRVRTILFSINDENTSESFFTSC--------ISKSQFLRVLDLDDSTIEV-LPREIG 83
             S +RRV+T+     DEN        C        +S    L  L L+   + V +PR +G
Sbjct:   828 SGVRRVKTLPRKRGDENLKVVNLRGCHGLEAIPDLSNHNALEKLVLERCNLLVKVPRSVG 887

Query:    84 NLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTT 143
             NL  +  LDL R   + +    +  L+ L+   L GC  L  LP++I  +  L+  ++  
Sbjct:   888 NLGKLLQLDLRRCSSLSEFLGDVSGLKCLEKFFLSGCSNLSVLPENIGSMPCLKELLLDG 947

Query:   144 KQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKC 203
                S     I  L  L  L +  C ++E L   +G L+ L  L L D  +L +LPS++  
Sbjct:   948 TAISNLPYSIFRLQKLEKLSLMGCRSIEELPSCVGYLTSLEDLYLDDT-ALRNLPSSIGD 1006

Query:   204 LSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGXXXXXXXXXXXXXG 263
             L + + L L+ C SL+           +  +  N    L++LF++G             G
Sbjct:  1007 LKNLQKLHLMRCTSLS-----------TIPETINKLMSLKELFINGSAVEELPIET---G 1052

Query:   264 STKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKE 323
             S   L  L   DC     +  S+  L +L  L + +   + +LPE+I  L  ++ L ++ 
Sbjct:  1053 SLLCLTDLSAGDCKFLKQVPSSIGGLNSLLQLQLDST-PIEALPEEIGDLHFIRQLDLRN 1111

Query:   324 CPAL 327
             C +L
Sbjct:  1112 CKSL 1115

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2098110 AT3G44670 [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 1.0e-12, P = 1.0e-12
 Identities = 66/246 (26%), Positives = 119/246 (48%)

Query:    63 QFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLK 122
             +FL  L +  S +  L      L++++++DLS    +K+LPN +    +L+ L LR C  
Sbjct:   693 EFLVELHMSFSKLRKLWEGTKQLRNLKWMDLSNSEDLKELPN-LSTATNLEELKLRDCSS 751

Query:   123 LEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSG 182
             L ELP  I  L SL+   +      ++       + L  L + +C +LE L   I   + 
Sbjct:   752 LVELPSSIEKLTSLQRLYLQRCSSLVELPSFGNATKLEELYLENCSSLEKLPPSINA-NN 810

Query:   183 LRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHL 242
             L+ L L++C  ++ LP A++  ++ + L L +C SL + L + +           T T+L
Sbjct:   811 LQQLSLINCSRVVELP-AIENATNLQKLDLGNCSSL-IELPLSI----------GTATNL 858

Query:   243 QKLFVSGXXXXXXXXXXXXXGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRK 302
             ++L +SG             G    L+   + +C N + L  ++ +L+ L+TL ++ C +
Sbjct:   859 KELNISGCSSLVKLPSSI--GDITNLKEFDLSNCSNLVELPINI-NLKFLDTLNLAGCSQ 915

Query:   303 LSSLPE 308
             L S PE
Sbjct:   916 LKSFPE 921

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=ISS

TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 87/322 (27%), Positives = 149/322 (46%)

Query:     6 CQ-SIPKRVRHLSFVSAS-ASRNDFSSLLSDLRRVRTILFSINDENTSESF-FTSCISKS 62
             C+  + +R R+LS++  + A   +F +L  +++ +RT L  ++  N+S S      +S+ 
Sbjct:   515 CKLQVSERTRYLSYLRDNYAEPMEFEAL-REVKFLRTFL-PLSLTNSSRSCCLDQMVSEK 572

Query:    63 QF-----LRVLDLDDSTIEVLPREI-GNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLI 116
                    LRVL L    I  LP +   N+ H R+LDLSR  +++KLP S+C + +LQTL+
Sbjct:   573 LLPTLTRLRVLSLSHYKIARLPPDFFKNISHARFLDLSR-TELEKLPKSLCYMYNLQTLL 631

Query:   117 LRGCLKLEELPKDIRYLVSLRMF-VVTTKQKSL-QESG-IACLSSLRSLIISHCWNLEYL 173
             L  C  L+ELP DI  L++LR   ++ TK + + +  G +  L +L +  +S        
Sbjct:   632 LSYCSSLKELPTDISNLINLRYLDLIGTKLRQMPRRFGRLKSLQTLTTFFVSASDGSR-- 689

Query:   174 FEHIGQLSGLRS-LILVDCPSLISLPSAVKC-LSSSETLILID------CKSLNLNLNIE 225
                +G L  L   L +V+   ++ +  A +  L+S + L  ID        S   N N  
Sbjct:   690 ISELGGLHDLHGKLKIVELQRVVDVADAAEANLNSKKHLREIDFVWRTGSSSSENNTNPH 749

Query:   226 M-EGEGSHHDRDNTRTHLQKLFVSGXXXXXXXXXXXXXGSTKTLQFLGIEDCPNFMALQG 284
               + E    ++     H++KL +                S   +  + + +C    +L  
Sbjct:   750 RTQNEAEVFEKLRPHRHIEKLAIE-RYKGRRFPDWLSDPSFSRIVCIRLRECQYCTSLP- 807

Query:   285 SLKDLEALETLLISACRKLSSL 306
             SL  L  L+ L IS    L S+
Sbjct:   808 SLGQLPCLKELHISGMVGLQSI 829

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 87/326 (26%), Positives = 149/326 (45%)

Query:    18 FVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSC--------ISKSQFLRVLD 69
             F++   S  D S   S +R+V+T+   + DEN        C        +S  + L  L 
Sbjct:   642 FLARQLSVLDLSE--SGIRQVQTLRNKMVDENLKVVILRGCHSLEAIPDLSNHEALEKLV 699

Query:    70 LDDSTIEV-LPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPK 128
              +  T+ V +P+ +GNL+ + +LD  R  ++ +    +  L+ L+ L L GC  L  LP+
Sbjct:   700 FEQCTLLVKVPKSVGNLRKLIHLDFRRCSKLSEFLVDVSGLKLLEKLFLSGCSDLSVLPE 759

Query:   129 DIRYLVSLRMFVVT-TKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLI 187
             +I  + SL+  ++  T  K+L ES I  L +L  L +  C  ++ L   IG L  L  L 
Sbjct:   760 NIGAMTSLKELLLDGTAIKNLPES-INRLQNLEILSLRGC-KIQELPLCIGTLKSLEKLY 817

Query:   188 LVDCPSLISLPSAVKCLSSSETLILIDCKSLNL---NLNIEMEG------EGSHHDRDNT 238
             L D  +L +LPS++  L + + L L+ C SL+    ++N E++        GS  +    
Sbjct:   818 LDDT-ALKNLPSSIGDLKNLQDLHLVRCTSLSKIPDSIN-ELKSLKKLFINGSAVEELPL 875

Query:   239 R-THLQKLF-VSGXXXXXXXXXXXXXGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLL 296
             + + L  L+  S              G   +L  L +   P   AL   +  L  +  L 
Sbjct:   876 KPSSLPSLYDFSAGDCKFLKQVPSSIGRLNSLLQLQLSSTP-IEALPEEIGALHFIRELE 934

Query:   297 ISACRKLSSLPEDIHHLTTLKTLSIK 322
             +  C+ L  LP+ I  + TL +L+++
Sbjct:   935 LRNCKFLKFLPKSIGDMDTLYSLNLE 960

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 7.1e-11, P = 7.1e-11
 Identities = 58/163 (35%), Positives = 90/163 (55%)

Query:    59 ISKSQFLRVLDLD--DSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLI 116
             +SK+  L  L+L    S +EV P  I NLK +    L+   Q+K +P  I  L+SL+T+ 
Sbjct:   644 LSKATNLEELNLSYCQSLVEVTP-SIKNLKGLSCFYLTNCIQLKDIPIGII-LKSLETVG 701

Query:   117 LRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEH 176
             + GC  L+  P +I +    R+++ +TK + L  S I+ LS L  L +S C  L  L  +
Sbjct:   702 MSGCSSLKHFP-EISWNTR-RLYLSSTKIEELPSS-ISRLSCLVKLDMSDCQRLRTLPSY 758

Query:   177 IGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLN 219
             +G L  L+SL L  C  L +LP  ++ L+S ETL +  C ++N
Sbjct:   759 LGHLVSLKSLNLDGCRRLENLPDTLQNLTSLETLEVSGCLNVN 801

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

FB|FBgn0038504 Sur-8 "Sur-8" [Drosophila melanogaster (taxid:7227)]

 Score = 159 (61.0 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 49/161 (30%), Positives = 82/161 (50%)

Query:    68 LDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELP 127
             L+L  + ++ LP +I NL+++  L LS    +KK+PN+I  L+ L+ L L    ++E LP
Sbjct:   467 LNLATNALQKLPDDIMNLQNLEILILSNN-MLKKIPNTIGNLRKLRILDLEEN-RIEVLP 524

Query:   128 KDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLI 187
              +I  L  L+  ++ T Q ++    I  L +L  L +S   NL++L E IG L  L +L 
Sbjct:   525 HEIGLLHELQRLILQTNQITMLPRSIGHLGNLTHLSVSEN-NLQFLPEEIGSLESLENLY 583

Query:   188 LVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEG 228
             +   P L  LP  +    + + L +  C    +   I+  G
Sbjct:   584 INQNPGLEKLPFELALCQNLKYLNIDKCPLSTIPPEIQAGG 624

GO:0017016 "Ras GTPase binding" evidence=ISS

GO:0000164 "protein phosphatase type 1 complex" evidence=IEA

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00025584001 SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (568 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	360
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-08
PLN03210	1153	PLN03210, PLN03210, Resistant to P	6e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-04

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 80/279 (28%), Positives = 120/279 (43%), Gaps = 48/279 (17%)

Query: 68  LDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELP 127
           L +  S +E L   + +L  +R +DL     +K++P+ +    +L+TL L  C  L ELP
Sbjct: 616 LQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELP 674

Query: 128 KDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLI 187
             I+YL                       + L  L +S C NLE L   I  L  L  L 
Sbjct: 675 SSIQYL-----------------------NKLEDLDMSRCENLEILPTGI-NLKSLYRLN 710

Query: 188 LVDCPSLISLP---SAVKCLSSSETLILIDCKSLNL----NLNIEMEGEGSHHDRDNTRT 240
           L  C  L S P   + +  L   ET I     +L L     L +         +R    T
Sbjct: 711 LSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLT 770

Query: 241 --------HLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEAL 292
                    L +LF+S +  L++LP   +Q   K L+ L IE+C N   L   + +LE+L
Sbjct: 771 PLMTMLSPSLTRLFLSDIPSLVELPS-SIQNLHK-LEHLEIENCINLETLPTGI-NLESL 827

Query: 293 ETLLISACRKLSSLPE---DIHHLTTLKTLSIKECPALW 328
           E+L +S C +L + P+   +I  L   +T  I+E P  W
Sbjct: 828 ESLDLSGCSRLRTFPDISTNISDLNLSRT-GIEEVP-WW 864

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 54.1 bits (130), Expect = 6e-08
 Identities = 80/280 (28%), Positives = 117/280 (41%), Gaps = 45/280 (16%)

Query: 65  LRVLDLDD-STIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKL 123
           L  L L D S++  LP  I  L  +  LD+SR   ++ LP  I  L+SL  L L GC +L
Sbjct: 659 LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRL 717

Query: 124 EELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSS---LRSLIISHCWNL--EYLFEHIG 178
           +  P DI   +S            L E+ I    S   L +L       +  E L+E + 
Sbjct: 718 KSFP-DISTNIS---------WLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQ 767

Query: 179 QLS--------GLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSL-NLNLNIEMEGE 229
            L+         L  L L D PSL+ LPS+++ L   E L + +C +L  L   I +E  
Sbjct: 768 PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLE-- 825

Query: 230 GSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDL 289
                       L+ L +SG  +L   P      S   L   GIE+ P        ++  
Sbjct: 826 -----------SLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVP------WWIEKF 868

Query: 290 EALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPALWE 329
             L  L ++ C  L  +  +I  L  L+T+   +C AL E
Sbjct: 869 SNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.6 bits (105), Expect = 4e-05
 Identities = 50/148 (33%), Positives = 77/148 (52%), Gaps = 5/148 (3%)

Query: 65  LRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLE 124
           L+ LDL D+ IE LP  + NL +++ LDLS +  +  LP  +  L +L  L L G  K+ 
Sbjct: 142 LKELDLSDNKIESLPSPLRNLPNLKNLDLS-FNDLSDLPKLLSNLSNLNNLDLSGN-KIS 199

Query: 125 ELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLR 184
           +LP +I  L +L    ++        S ++ L +L  L +S+   LE L E IG LS L 
Sbjct: 200 DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN-KLEDLPESIGNLSNLE 258

Query: 185 SLILVDCPSLISLPSAVKCLSSSETLIL 212
           +L L +    IS  S++  L++   L L
Sbjct: 259 TLDLSNN--QISSISSLGSLTNLRELDL 284

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 9e-04
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 65  LRVLDLDDSTIEVLPREI-GNLKHMRYLDLSRYCQIKKL-PNSICELQSLQTLILRGC 120
           L+ LDL ++ + V+P      L +++ LDLS    +  + P +   L SL++L L G 
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLS-GNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	360
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.9
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.9
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.9
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.81
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.77
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.69
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.68
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.65
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.64
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.6
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.59
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.59
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.58
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.57
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.51
KOG4341	483	consensus F-box protein containing LRR [General fu	99.47
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.38
KOG4341	483	consensus F-box protein containing LRR [General fu	99.34
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.3
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.3
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.1
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.01
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.0
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.98
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.97
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.97
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.97
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.95
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.86
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.85
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.84
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.71
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.69
PLN03150	623	hypothetical protein; Provisional	98.65
PLN03150	623	hypothetical protein; Provisional	98.61
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.47
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.4
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.31
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.28
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.23
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.23
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.23
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.2
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.1
PRK15386	426	type III secretion protein GogB; Provisional	98.09
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.04
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.02
PRK15386	426	type III secretion protein GogB; Provisional	98.02
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.98
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.95
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.89
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.64
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.59
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.31
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.26
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.23
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.19
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.18
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.14
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.91
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.84
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.55
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.21
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.53
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.38
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.51
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.54
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	91.65
KOG4308	478	consensus LRR-containing protein [Function unknown	90.86
KOG4308	478	consensus LRR-containing protein [Function unknown	89.98
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.11
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.76
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.37
smart00370	26	LRR Leucine-rich repeats, outliers.	85.37

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=1.2e-29  Score=257.52  Aligned_cols=309  Identities=19%  Similarity=0.163  Sum_probs=165.4

Q ss_pred             CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCc-ccCcCCCCCCCcC
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIE-VLPREIGNLKHMR   89 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~   89 (360)
                      ++++.|++.+|.+.. .++..+..+++|++|++++|.+   ...++..+.++++|++|++++|.+. .+|..+.++++|+
T Consensus       140 ~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~n~l---~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  215 (968)
T PLN00113        140 PNLETLDLSNNMLSG-EIPNDIGSFSSLKVLDLGGNVL---VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK  215 (968)
T ss_pred             CCCCEEECcCCcccc-cCChHHhcCCCCCEEECccCcc---cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence            345555555555443 3444555666666666666554   3334445556666666666666655 4555566666666


Q ss_pred             eEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEecccccc-ccccCCCCCCCcEeeccCCC
Q 039007           90 YLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSL-QESGIACLSSLRSLIISHCW  168 (360)
Q Consensus        90 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~  168 (360)
                      +|++++|...+.+|..++++++|+.|++++|...+.+|..++.+++|+.|++++|.+.. .+..+..+++|+.|++++|.
T Consensus       216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  295 (968)
T PLN00113        216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS  295 (968)
T ss_pred             EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence            66666654444555556666666666666655555556566666666666666665542 34455556666666666655


Q ss_pred             chhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccc-------------cccCCCCCCCC
Q 039007          169 NLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNI-------------EMEGEGSHHDR  235 (360)
Q Consensus       169 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------~~~~~~~~~~~  235 (360)
                      ....+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|......+..             .....+..+..
T Consensus       296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~  375 (968)
T PLN00113        296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG  375 (968)
T ss_pred             eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence            44455555566666666666666555555555666666666666655432211100             00000001111


Q ss_pred             CCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCc
Q 039007          236 DNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTT  315 (360)
Q Consensus       236 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  315 (360)
                      .....+|+.|++++|.....+|..+  ..+++|+.|++++|.....+|..+..+++|+.|++++|.+.+.++..+..+++
T Consensus       376 ~~~~~~L~~L~l~~n~l~~~~p~~~--~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  453 (968)
T PLN00113        376 LCSSGNLFKLILFSNSLEGEIPKSL--GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS  453 (968)
T ss_pred             HhCcCCCCEEECcCCEecccCCHHH--hCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCC
Confidence            1222334444444444444444444  44555555555555444455555555566666666665555555555555566


Q ss_pred             cceecccCCh
Q 039007          316 LKTLSIKECP  325 (360)
Q Consensus       316 L~~L~l~~c~  325 (360)
                      |++|++++|.
T Consensus       454 L~~L~L~~n~  463 (968)
T PLN00113        454 LQMLSLARNK  463 (968)
T ss_pred             CcEEECcCce
Confidence            6666666664

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=1.6e-29  Score=256.46  Aligned_cols=297  Identities=21%  Similarity=0.233  Sum_probs=214.1

Q ss_pred             CCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCc-ccCcCCCCCCCc
Q 039007           10 PKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIE-VLPREIGNLKHM   88 (360)
Q Consensus        10 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L   88 (360)
                      ..+|+.|++.++.+.+ .+...+..+++|++|++++|.+.  ...+...+..+++|++|++++|.+. .+|.  ..+++|
T Consensus        68 ~~~v~~L~L~~~~i~~-~~~~~~~~l~~L~~L~Ls~n~~~--~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L  142 (968)
T PLN00113         68 SSRVVSIDLSGKNISG-KISSAIFRLPYIQTINLSNNQLS--GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNL  142 (968)
T ss_pred             CCcEEEEEecCCCccc-cCChHHhCCCCCCEEECCCCccC--CcCChHHhccCCCCCEEECcCCccccccCc--cccCCC
Confidence            3589999999998887 56778999999999999999863  2334445668899999999998877 5553  457888


Q ss_pred             CeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEecccccc-ccccCCCCCCCcEeeccCC
Q 039007           89 RYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSL-QESGIACLSSLRSLIISHC  167 (360)
Q Consensus        89 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~  167 (360)
                      ++|++++|...+.+|..++.+++|+.|++++|...+.+|..++.+++|++|++++|.+.. .|..+..+++|+.|++.+|
T Consensus       143 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  222 (968)
T PLN00113        143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN  222 (968)
T ss_pred             CEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC
Confidence            888888886666778778888888888888887777788888888888888888887653 4667788888888888887


Q ss_pred             CchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEe
Q 039007          168 WNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFV  247 (360)
Q Consensus       168 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  247 (360)
                      .....+|..++.+++|+.|++++|.....+|..++.+++|++|++++|.....           .+.....+.+|+.|++
T Consensus       223 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----------~p~~l~~l~~L~~L~L  291 (968)
T PLN00113        223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP-----------IPPSIFSLQKLISLDL  291 (968)
T ss_pred             ccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc-----------CchhHhhccCcCEEEC
Confidence            76667777788888888888888876667777788888888888877653321           1122334456666666


Q ss_pred             cCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCC
Q 039007          248 SGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKEC  324 (360)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c  324 (360)
                      ++|.....+|.++  ..+++|++|++++|.....+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|
T Consensus       292 s~n~l~~~~p~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n  366 (968)
T PLN00113        292 SDNSLSGEIPELV--IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN  366 (968)
T ss_pred             cCCeeccCCChhH--cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence            6665555555555  55666666666666554555555666666666666666655555555555666666666555

>PLN03210 Resistant to P

Probab=99.91  E-value=1.2e-23  Score=214.57  Aligned_cols=291  Identities=22%  Similarity=0.298  Sum_probs=208.7

Q ss_pred             CCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCC-CcccCcCCCCCC
Q 039007            8 SIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDST-IEVLPREIGNLK   86 (360)
Q Consensus         8 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~l~   86 (360)
                      .+|+.++.|.+.++.+..  ++..| ...+|+.|++.++.+.    .++..+..+++|+.|+++++. +..+| .++.++
T Consensus       586 ~lp~~Lr~L~~~~~~l~~--lP~~f-~~~~L~~L~L~~s~l~----~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~  657 (1153)
T PLN03210        586 YLPPKLRLLRWDKYPLRC--MPSNF-RPENLVKLQMQGSKLE----KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMAT  657 (1153)
T ss_pred             hcCcccEEEEecCCCCCC--CCCcC-CccCCcEEECcCcccc----ccccccccCCCCCEEECCCCCCcCcCC-ccccCC
Confidence            457778888888776644  33333 4577888888877653    223345677888888887765 44555 467778


Q ss_pred             CcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccc-cccccCCCCCCCcEeecc
Q 039007           87 HMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKS-LQESGIACLSSLRSLIIS  165 (360)
Q Consensus        87 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~  165 (360)
                      +|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ .+++|+.|++++|... ..|.   ..++|+.|++.
T Consensus       658 ~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~  733 (1153)
T PLN03210        658 NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLD  733 (1153)
T ss_pred             cccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecC
Confidence            88888888877777778777888888888888777777777654 5677777777766422 1111   12344555554


Q ss_pred             CCCchhhhHh------------------------------hhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCC
Q 039007          166 HCWNLEYLFE------------------------------HIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDC  215 (360)
Q Consensus       166 ~~~~~~~~~~------------------------------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  215 (360)
                      +|. ++.+|.                              ....+++|+.|++++|.....+|..++++++|+.|++++|
T Consensus       734 ~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C  812 (1153)
T PLN03210        734 ETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENC  812 (1153)
T ss_pred             CCc-cccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCC
Confidence            432 122221                              1122468889999998888889999999999999999999


Q ss_pred             cCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccc
Q 039007          216 KSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETL  295 (360)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L  295 (360)
                      ..+...+            ....+++|+.|++++|..+..+|..     .++|++|+|++| .++.+|..+..+++|+.|
T Consensus       813 ~~L~~LP------------~~~~L~sL~~L~Ls~c~~L~~~p~~-----~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L  874 (1153)
T PLN03210        813 INLETLP------------TGINLESLESLDLSGCSRLRTFPDI-----STNISDLNLSRT-GIEEVPWWIEKFSNLSFL  874 (1153)
T ss_pred             CCcCeeC------------CCCCccccCEEECCCCCcccccccc-----ccccCEeECCCC-CCccChHHHhcCCCCCEE
Confidence            8765432            1125678999999999887776643     368999999987 677888888999999999


Q ss_pred             cccccccccCCCccccCCCccceecccCChhHHh
Q 039007          296 LISACRKLSSLPEDIHHLTTLKTLSIKECPALWE  329 (360)
Q Consensus       296 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~  329 (360)
                      ++++|+.++.+|..+..++.|+.+++.+|+.++.
T Consensus       875 ~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~  908 (1153)
T PLN03210        875 DMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE  908 (1153)
T ss_pred             ECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence            9999998888888888889999999999987763

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.90  E-value=3.7e-25  Score=197.05  Aligned_cols=300  Identities=18%  Similarity=0.133  Sum_probs=214.4

Q ss_pred             CCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC-cCCCCCCC
Q 039007            9 IPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-REIGNLKH   87 (360)
Q Consensus         9 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~   87 (360)
                      .+.+++.|+|.+|-+.. .-...++.++.||+|+|+.|.+.   ......|..-.++++|+++.|.++.+. ..|..+.+
T Consensus       123 ~sghl~~L~L~~N~I~s-v~se~L~~l~alrslDLSrN~is---~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lns  198 (873)
T KOG4194|consen  123 ESGHLEKLDLRHNLISS-VTSEELSALPALRSLDLSRNLIS---EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNS  198 (873)
T ss_pred             cccceeEEeeecccccc-ccHHHHHhHhhhhhhhhhhchhh---cccCCCCCCCCCceEEeeccccccccccccccccch
Confidence            34678888888887776 55667888888888888888763   222234556667888888888887543 34677778


Q ss_pred             cCeEeccccccccccc-hhhhcCCccceEeeccccCcCcC-CccccccccccEEEEeccccccc-cccCCCCCCCcEeec
Q 039007           88 MRYLDLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEEL-PKDIRYLVSLRMFVVTTKQKSLQ-ESGIACLSSLRSLII  164 (360)
Q Consensus        88 L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l  164 (360)
                      |.+|.++.| .++.+| ..|.++++|+.|+|..|. +..+ .-.|..+++|+.|.+..|.+... ...|..+.++++|++
T Consensus       199 L~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L  276 (873)
T KOG4194|consen  199 LLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNL  276 (873)
T ss_pred             heeeecccC-cccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeec
Confidence            888888877 556666 445568888888888763 3222 23467788888888888877655 345667888888888


Q ss_pred             cCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccce
Q 039007          165 SHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQK  244 (360)
Q Consensus       165 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  244 (360)
                      ..|.....-..++.+++.|+.|+++.|....--++.+.-+++|+.|+++++.....           ....+..+..|+.
T Consensus       277 ~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l-----------~~~sf~~L~~Le~  345 (873)
T KOG4194|consen  277 ETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL-----------DEGSFRVLSQLEE  345 (873)
T ss_pred             ccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccC-----------ChhHHHHHHHhhh
Confidence            88755554455677889999999999876665667778889999999988764432           2233445568899


Q ss_pred             EEecCccCCCCchhhhhcCCCCCCcEEecccCCCcc---cccccccCccccccccccccccccCCC-ccccCCCccceec
Q 039007          245 LFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFM---ALQGSLKDLEALETLLISACRKLSSLP-EDIHHLTTLKTLS  320 (360)
Q Consensus       245 L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~  320 (360)
                      |+|+.|. +..+....+ ..+++|++|+|+.|...-   +-...|.++++|+.|++.+|+ ++.+| ..|..+++|++|+
T Consensus       346 LnLs~Ns-i~~l~e~af-~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~Ld  422 (873)
T KOG4194|consen  346 LNLSHNS-IDHLAEGAF-VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLD  422 (873)
T ss_pred             hcccccc-hHHHHhhHH-HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecchhhhccCcccceec
Confidence            9999886 445544433 677899999999885432   444567889999999999988 44554 4577899999999


Q ss_pred             ccCChhHH
Q 039007          321 IKECPALW  328 (360)
Q Consensus       321 l~~c~~~~  328 (360)
                      +.+|+-.+
T Consensus       423 L~~NaiaS  430 (873)
T KOG4194|consen  423 LGDNAIAS  430 (873)
T ss_pred             CCCCccee
Confidence            99996443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.90  E-value=8.4e-26  Score=202.88  Aligned_cols=307  Identities=26%  Similarity=0.318  Sum_probs=177.7

Q ss_pred             CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCe
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRY   90 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~   90 (360)
                      ..++.|++.+|++..  +.+.+..++.||.+.+..|.+.  ...+|..+-++..|..|+++.|++.+.|..+..-+++-.
T Consensus        55 qkLEHLs~~HN~L~~--vhGELs~Lp~LRsv~~R~N~LK--nsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iV  130 (1255)
T KOG0444|consen   55 QKLEHLSMAHNQLIS--VHGELSDLPRLRSVIVRDNNLK--NSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIV  130 (1255)
T ss_pred             hhhhhhhhhhhhhHh--hhhhhccchhhHHHhhhccccc--cCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEE
Confidence            345666666666544  5666777777777777777654  333455566677777777777777777777766677777


Q ss_pred             Eeccccccccccchh-hhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccc-cccCCCCCCCcEeeccCCC
Q 039007           91 LDLSRYCQIKKLPNS-ICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQ-ESGIACLSSLRSLIISHCW  168 (360)
Q Consensus        91 L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~  168 (360)
                      |++++| .++.+|.. +-+++.|-.|++++| ....+|..+.++..|+.|.+++|.+... ...+-.+++|+.|.+++..
T Consensus       131 LNLS~N-~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq  208 (1255)
T KOG0444|consen  131 LNLSYN-NIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ  208 (1255)
T ss_pred             EEcccC-ccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc
Confidence            777765 55666643 346666667777664 5556666666666667666666654432 1222333344444444432


Q ss_pred             c-hhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCcccccccccc-----------CCCCCCCCC
Q 039007          169 N-LEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEME-----------GEGSHHDRD  236 (360)
Q Consensus       169 ~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----------~~~~~~~~~  236 (360)
                      . ...+|..+..+.+|..++++.| .+..+|+.+..+++|+.|.++++...........+           ..-..+...
T Consensus       209 RTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~av  287 (1255)
T KOG0444|consen  209 RTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAV  287 (1255)
T ss_pred             chhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHH
Confidence            1 2234444444444444444443 33344444444444444444444322211100000           000022233


Q ss_pred             CCCCccceEEecCccC-CCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCc
Q 039007          237 NTRTHLQKLFVSGLKQ-LLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTT  315 (360)
Q Consensus       237 ~~~~~L~~L~L~~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  315 (360)
                      ..+++|++|.+.+|+. +..+|..+  +.+.+|+.+..++| .++-+|+.+..|+.|+.|.++.|+.+ .+|+.+.-++.
T Consensus       288 cKL~kL~kLy~n~NkL~FeGiPSGI--GKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~  363 (1255)
T KOG0444|consen  288 CKLTKLTKLYANNNKLTFEGIPSGI--GKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPD  363 (1255)
T ss_pred             hhhHHHHHHHhccCcccccCCccch--hhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccccccee-echhhhhhcCC
Confidence            4445666666665542 24445555  66677777777765 67777888888888888888887755 46777777888


Q ss_pred             cceecccCChhHH
Q 039007          316 LKTLSIKECPALW  328 (360)
Q Consensus       316 L~~L~l~~c~~~~  328 (360)
                      |++|++..||.+.
T Consensus       364 l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  364 LKVLDLRENPNLV  376 (1255)
T ss_pred             cceeeccCCcCcc
Confidence            8888888887655

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.90  E-value=5.7e-26  Score=203.95  Aligned_cols=298  Identities=19%  Similarity=0.245  Sum_probs=218.2

Q ss_pred             cCCCCc------ceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCc--cc
Q 039007            7 QSIPKR------VRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIE--VL   78 (360)
Q Consensus         7 ~~~~~~------l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~   78 (360)
                      +.+|..      ++-|.+....+..  ++..++.|.+|.+|.+.+|.+    ..+...+..++.|+.+.++.|++.  .+
T Consensus        22 ~~FP~~v~qMt~~~WLkLnrt~L~~--vPeEL~~lqkLEHLs~~HN~L----~~vhGELs~Lp~LRsv~~R~N~LKnsGi   95 (1255)
T KOG0444|consen   22 DRFPHDVEQMTQMTWLKLNRTKLEQ--VPEELSRLQKLEHLSMAHNQL----ISVHGELSDLPRLRSVIVRDNNLKNSGI   95 (1255)
T ss_pred             CcCchhHHHhhheeEEEechhhhhh--ChHHHHHHhhhhhhhhhhhhh----HhhhhhhccchhhHHHhhhccccccCCC
Confidence            456644      4455666666555  778899999999999999985    345666888999999999999987  78


Q ss_pred             CcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCcc-ccccccccEEEEeccccccccccCCCCC
Q 039007           79 PREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKD-IRYLVSLRMFVVTTKQKSLQESGIACLS  157 (360)
Q Consensus        79 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~  157 (360)
                      |..+.++..|..|++++| .+++.|..+..-+++-.|++++| .+.++|.. +.++..|-.|+++.|++...|..+..+.
T Consensus        96 P~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~  173 (1255)
T KOG0444|consen   96 PTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLS  173 (1255)
T ss_pred             Cchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHh
Confidence            999999999999999998 78999999999999999999986 67788865 5688999999999999999998999999


Q ss_pred             CCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCC-CcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCC
Q 039007          158 SLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPS-LISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRD  236 (360)
Q Consensus       158 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  236 (360)
                      .|+.|++++|.....-...+..++.|++|.+++... ...+|..+..+.+|..++++.++.-.            .++..
T Consensus       174 ~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~------------vPecl  241 (1255)
T KOG0444|consen  174 MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI------------VPECL  241 (1255)
T ss_pred             hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc------------chHHH
Confidence            999999999866555445566788889999988753 45789999999999999999875432            33345


Q ss_pred             CCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCcccccccccccccc--------------
Q 039007          237 NTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRK--------------  302 (360)
Q Consensus       237 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~--------------  302 (360)
                      ....+|+.|+|++|... ++....  +...+|++|+++.| .++.+|..+..+++|+.|++.+|+.              
T Consensus       242 y~l~~LrrLNLS~N~it-eL~~~~--~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~  317 (1255)
T KOG0444|consen  242 YKLRNLRRLNLSGNKIT-ELNMTE--GEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ  317 (1255)
T ss_pred             hhhhhhheeccCcCcee-eeeccH--HHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhh
Confidence            55566777777776422 222211  23344555555554 3444555555555555555544442              


Q ss_pred             ----------ccCCCccccCCCccceecccCChhHH
Q 039007          303 ----------LSSLPEDIHHLTTLKTLSIKECPALW  328 (360)
Q Consensus       303 ----------~~~~~~~~~~~~~L~~L~l~~c~~~~  328 (360)
                                +..+|+++..|+.|+.|.++.|..++
T Consensus       318 Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiT  353 (1255)
T KOG0444|consen  318 LEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLIT  353 (1255)
T ss_pred             hHHHHhhccccccCchhhhhhHHHHHhcccccceee
Confidence                      33445555555666666665554433

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.89  E-value=6.9e-24  Score=189.01  Aligned_cols=341  Identities=18%  Similarity=0.128  Sum_probs=202.0

Q ss_pred             ccCCCCcceEEEeeeccccccchhhhhccC--ccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCC
Q 039007            6 CQSIPKRVRHLSFVSASASRNDFSSLLSDL--RRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIG   83 (360)
Q Consensus         6 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~   83 (360)
                      +..+|...+.|+...+.++.-+.. .+.++  +.-+.|++++|.+.   .+-...|.++++|+++.+..|.++.+|....
T Consensus        47 pa~c~c~~~lldcs~~~lea~~~~-~l~g~lp~~t~~LdlsnNkl~---~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~  122 (873)
T KOG4194|consen   47 PATCPCNTRLLDCSDRELEAIDKS-RLKGFLPSQTQTLDLSNNKLS---HIDFEFFYNLPNLQEVNLNKNELTRIPRFGH  122 (873)
T ss_pred             CCcCCCCceeeecCcccccccccc-ccCCcCccceeeeeccccccc---cCcHHHHhcCCcceeeeeccchhhhcccccc
Confidence            344566677777777766652222 22222  24556888888763   3334557788888888888888888887766


Q ss_pred             CCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCc-cccccccccEEEEeccccccc-cccCCCCCCCcE
Q 039007           84 NLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPK-DIRYLVSLRMFVVTTKQKSLQ-ESGIACLSSLRS  161 (360)
Q Consensus        84 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~  161 (360)
                      ...+|+.|++.+|.+.+.-.+.+..++.|+.|+|+.| .+.++|. .+..-.++++|++++|.++.+ ...|..+.+|..
T Consensus       123 ~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~t  201 (873)
T KOG4194|consen  123 ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLT  201 (873)
T ss_pred             cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeeccccccccccccccccchhee
Confidence            6777888888877333333456777888888888886 5555553 344556788888888887765 345667778888


Q ss_pred             eeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccC-------------
Q 039007          162 LIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEG-------------  228 (360)
Q Consensus       162 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------------  228 (360)
                      |.++.|...+--+..+..+++|+.|++..|+.-..-...+..+++|+.|.+..+......... |.|             
T Consensus       202 lkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~-Fy~l~kme~l~L~~N~  280 (873)
T KOG4194|consen  202 LKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGA-FYGLEKMEHLNLETNR  280 (873)
T ss_pred             eecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcc-eeeecccceeecccch
Confidence            888876444433445666888888888777532221233566777777777665443322111 000             


Q ss_pred             -CCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCC
Q 039007          229 -EGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLP  307 (360)
Q Consensus       229 -~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  307 (360)
                       ..........+..|+.|++++|.....-++..  ..+++|+.|+|++|+..+--++.|..+..|++|.+++|.+..--.
T Consensus       281 l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W--sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e  358 (873)
T KOG4194|consen  281 LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW--SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE  358 (873)
T ss_pred             hhhhhcccccccchhhhhccchhhhheeecchh--hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh
Confidence             00011123334455666666554332222322  456666666666664333334456666666666666665332111


Q ss_pred             ccccCCCccceecccCChhHHhhcCCCCCCCCccccccceeeecccccc
Q 039007          308 EDIHHLTTLKTLSIKECPALWERCKPLTGEDWSKIARIPRIMLDDEMTK  356 (360)
Q Consensus       308 ~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  356 (360)
                      ..+..+.+|++|+++.|.-  ..+.+-....+..+..++.+.+.+|+++
T Consensus       359 ~af~~lssL~~LdLr~N~l--s~~IEDaa~~f~gl~~LrkL~l~gNqlk  405 (873)
T KOG4194|consen  359 GAFVGLSSLHKLDLRSNEL--SWCIEDAAVAFNGLPSLRKLRLTGNQLK  405 (873)
T ss_pred             hHHHHhhhhhhhcCcCCeE--EEEEecchhhhccchhhhheeecCceee
Confidence            2244466777777777642  1234444555666777888888888764

>PLN03210 Resistant to P

Probab=99.88  E-value=8.6e-22  Score=201.13  Aligned_cols=309  Identities=23%  Similarity=0.340  Sum_probs=165.7

Q ss_pred             CcceEEEeeeccccccc-hhhhhccCccccEEEEeccCCC---CcccchHHHhhcCC-CccEEEEeCCCCcccCcCCCCC
Q 039007           11 KRVRHLSFVSASASRND-FSSLLSDLRRVRTILFSINDEN---TSESFFTSCISKSQ-FLRVLDLDDSTIEVLPREIGNL   85 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~l   85 (360)
                      ..++.+.+....+.... ...+|.++++|+.|.+..+...   .....++..+..++ .|+.|.+.++.+..+|..+ .+
T Consensus       532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~  610 (1153)
T PLN03210        532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RP  610 (1153)
T ss_pred             ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-Cc
Confidence            45666666544443322 2355777888888777654311   00111223333332 4666666665555555544 34


Q ss_pred             CCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccc-cccccccCCCCCCCcEeec
Q 039007           86 KHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQ-KSLQESGIACLSSLRSLII  164 (360)
Q Consensus        86 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l  164 (360)
                      .+|+.|++.++ .+..++..+..+++|+.|+++++.....+|. +..+++|+.|++++|. ....|..+.++++|+.|++
T Consensus       611 ~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L  688 (1153)
T PLN03210        611 ENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM  688 (1153)
T ss_pred             cCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence            55556666554 3444555455555566666655444444542 4455555666555543 2233445555555666665


Q ss_pred             cCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCcccccccc----------------cc-
Q 039007          165 SHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIE----------------ME-  227 (360)
Q Consensus       165 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----------------~~-  227 (360)
                      .+|..++.+|..+ .+++|+.|++++|.....+|..   .++|++|++.++..........                +. 
T Consensus       689 ~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~  764 (1153)
T PLN03210        689 SRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWE  764 (1153)
T ss_pred             CCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhccc
Confidence            5555555554433 4555555555555544444432   2344444444433111100000                00 


Q ss_pred             CCCC-CCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccc---
Q 039007          228 GEGS-HHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKL---  303 (360)
Q Consensus       228 ~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---  303 (360)
                      .... .......+++|+.|++++|.....+|..+  +++++|+.|++++|..++.+|... .+++|+.|++++|..+   
T Consensus       765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~  841 (1153)
T PLN03210        765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI--QNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF  841 (1153)
T ss_pred             cccccchhhhhccccchheeCCCCCCccccChhh--hCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc
Confidence            0000 00111223467777777777777777776  677777777777777777666544 4566666666665443   


Q ss_pred             -----------------cCCCccccCCCccceecccCChhHHh
Q 039007          304 -----------------SSLPEDIHHLTTLKTLSIKECPALWE  329 (360)
Q Consensus       304 -----------------~~~~~~~~~~~~L~~L~l~~c~~~~~  329 (360)
                                       +.+|..+..+++|++|++.+|+.+..
T Consensus       842 p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~  884 (1153)
T PLN03210        842 PDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQR  884 (1153)
T ss_pred             cccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCc
Confidence                             24556667788999999999987764

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.81  E-value=1e-22  Score=174.02  Aligned_cols=125  Identities=28%  Similarity=0.347  Sum_probs=52.4

Q ss_pred             CCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCcccc-ccccccEEE
Q 039007           62 SQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIR-YLVSLRMFV  140 (360)
Q Consensus        62 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~-~l~~L~~L~  140 (360)
                      ++.|++|+...|.++.+|+.++.+..|..|++..| .+..+|+ |..|..|.+|+++.| .+..+|+... .++++..|+
T Consensus       182 m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~N-ki~~lPe-f~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLD  258 (565)
T KOG0472|consen  182 MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRN-KIRFLPE-FPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLD  258 (565)
T ss_pred             HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhc-ccccCCC-CCccHHHHHHHhccc-HHHhhHHHHhcccccceeee
Confidence            33344444444434444444444444444444433 3333332 344444444444432 3333333322 444444444


Q ss_pred             EeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccC
Q 039007          141 VTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDC  191 (360)
Q Consensus       141 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  191 (360)
                      +..|++...|+.+..+++|++||+++| .++.+|..++.+ +|+.|-+.+|
T Consensus       259 LRdNklke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGN  307 (565)
T KOG0472|consen  259 LRDNKLKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGN  307 (565)
T ss_pred             ccccccccCchHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCC
Confidence            444444444444444444444444443 333444444444 4444444443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.77  E-value=3.5e-21  Score=164.77  Aligned_cols=267  Identities=27%  Similarity=0.285  Sum_probs=176.7

Q ss_pred             ccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceE
Q 039007           36 RRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTL  115 (360)
Q Consensus        36 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  115 (360)
                      ..++.+.++.|.+.    .+...+.++..|.+|.+.++.+..+|+.++.+..++.++++++ ....+|..++.+.+|..+
T Consensus        45 v~l~~lils~N~l~----~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l  119 (565)
T KOG0472|consen   45 VDLQKLILSHNDLE----VLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKL  119 (565)
T ss_pred             cchhhhhhccCchh----hccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhh
Confidence            45677777777642    2223366777777777777777777777777777777777766 566677777777777777


Q ss_pred             eeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCc
Q 039007          116 ILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLI  195 (360)
Q Consensus       116 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  195 (360)
                      +.+.| ....+|..++++..+..++...|++...|..+.++.++..+++.+|+. ..+|+..-.++.|+.|+.-.| ..+
T Consensus       120 ~~s~n-~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i~m~~L~~ld~~~N-~L~  196 (565)
T KOG0472|consen  120 DCSSN-ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKL-KALPENHIAMKRLKHLDCNSN-LLE  196 (565)
T ss_pred             hcccc-ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccch-hhCCHHHHHHHHHHhcccchh-hhh
Confidence            77765 344566677777777777777777777777777777777777777533 333333333777777776554 556


Q ss_pred             ccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEeccc
Q 039007          196 SLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIED  275 (360)
Q Consensus       196 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~  275 (360)
                      .+|+.++.+.+|+.|++..++...             ...+..|..|+.++++.|. +..+|.... ..++.+..|++.+
T Consensus       197 tlP~~lg~l~~L~~LyL~~Nki~~-------------lPef~gcs~L~Elh~g~N~-i~~lpae~~-~~L~~l~vLDLRd  261 (565)
T KOG0472|consen  197 TLPPELGGLESLELLYLRRNKIRF-------------LPEFPGCSLLKELHVGENQ-IEMLPAEHL-KHLNSLLVLDLRD  261 (565)
T ss_pred             cCChhhcchhhhHHHHhhhccccc-------------CCCCCccHHHHHHHhcccH-HHhhHHHHh-cccccceeeeccc
Confidence            677777777777777776665332             1234555667777776654 445555442 5677777777777


Q ss_pred             CCCcccccccccCccccccccccccccccCCCccccCCCccceecccCChhHH
Q 039007          276 CPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPALW  328 (360)
Q Consensus       276 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~  328 (360)
                      | .+.++|..+.-+.+|.+||+++|. ++.+|..++++ .|+.|.+.|||.-+
T Consensus       262 N-klke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrT  311 (565)
T KOG0472|consen  262 N-KLKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRT  311 (565)
T ss_pred             c-ccccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCchHH
Confidence            6 666777767677777777777766 44566667777 77777777776533

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.73  E-value=3.2e-19  Score=167.18  Aligned_cols=139  Identities=27%  Similarity=0.206  Sum_probs=78.1

Q ss_pred             CCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCC----------------------CcccCcccCCCCCCCEEeecCC
Q 039007          158 SLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPS----------------------LISLPSAVKCLSSSETLILIDC  215 (360)
Q Consensus       158 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~----------------------~~~~~~~~~~~~~L~~L~l~~~  215 (360)
                      +|++++++.+ .+..+|.++..|.+|+.++...|..                      +..+|.......+|++|++..+
T Consensus       242 nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N  320 (1081)
T KOG0618|consen  242 NLQYLDISHN-NLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN  320 (1081)
T ss_pred             cceeeecchh-hhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc
Confidence            4455555543 3445566677777777776655432                      2255666777888888888765


Q ss_pred             cCcccccc--------------------------------------ccccCCCCCCCCCCCCCccceEEecCccCCCCch
Q 039007          216 KSLNLNLN--------------------------------------IEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLP  257 (360)
Q Consensus       216 ~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~  257 (360)
                      ........                                      ..+.-++........+++|+.|+|++|. +..+|
T Consensus       321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fp  399 (1081)
T KOG0618|consen  321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFP  399 (1081)
T ss_pred             cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCC
Confidence            42211110                                      0111123334445556678888888875 44566


Q ss_pred             hhhhcCCCCCCcEEecccCCCcccccccccCcccccccccccc
Q 039007          258 QWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISAC  300 (360)
Q Consensus       258 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~  300 (360)
                      +... .++..|++|+|++| +++.+|..+..++.|++|...+|
T Consensus       400 as~~-~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN  440 (1081)
T KOG0618|consen  400 ASKL-RKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSN  440 (1081)
T ss_pred             HHHH-hchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCC
Confidence            5554 67777888888877 45545444444444444443333

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=3.4e-18  Score=152.38  Aligned_cols=285  Identities=18%  Similarity=0.074  Sum_probs=138.3

Q ss_pred             EEEeeeccccccchhhhhccCccccEEEEeccCCCCc-ccchHHHhhcCCCccEEEEeCCCCcc-------cCcCCCCCC
Q 039007           15 HLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTS-ESFFTSCISKSQFLRVLDLDDSTIEV-------LPREIGNLK   86 (360)
Q Consensus        15 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~-------~~~~~~~l~   86 (360)
                      +|+|.++.+++......++.++.|++|+++++.+... ...+...+...+.|+.++++++.+..       ++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            4666677776556666777777788888887765311 12344556666677777777665431       223344555


Q ss_pred             CcCeEeccccccccccchhhhcCCc---cceEeeccccCcC----cCCcccccc-ccccEEEEeccccccccccCCCCCC
Q 039007           87 HMRYLDLSRYCQIKKLPNSICELQS---LQTLILRGCLKLE----ELPKDIRYL-VSLRMFVVTTKQKSLQESGIACLSS  158 (360)
Q Consensus        87 ~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~~~~----~~p~~~~~l-~~L~~L~l~~~~~~~~~~~~~~l~~  158 (360)
                      +|+.|++++|......+..+..+.+   |+.|++++|...+    .+...+..+ ++|+.|++++|.+...         
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~---------  152 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA---------  152 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch---------
Confidence            6666666655443333333333333   6666665553331    111222333 4555555555544311         


Q ss_pred             CcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCc----ccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCC
Q 039007          159 LRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLI----SLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHD  234 (360)
Q Consensus       159 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  234 (360)
                                ....+...+..+++|++|++++|....    .++..+..+++|++|++++|.......       .....
T Consensus       153 ----------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-------~~l~~  215 (319)
T cd00116         153 ----------SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA-------SALAE  215 (319)
T ss_pred             ----------HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH-------HHHHH
Confidence                      001222333344444444444443221    112222233445555554443211000       00001


Q ss_pred             CCCCCCccceEEecCccCCCCchhhhh---cCCCCCCcEEecccCCCcc----cccccccCccccccccccccccccC--
Q 039007          235 RDNTRTHLQKLFVSGLKQLLDLPQWLL---QGSTKTLQFLGIEDCPNFM----ALQGSLKDLEALETLLISACRKLSS--  305 (360)
Q Consensus       235 ~~~~~~~L~~L~L~~~~~~~~~~~~~~---~~~~~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~--  305 (360)
                      ....+++|++|++++|.........+.   ....+.|++|++++|....    .+...+..+++|+++++++|.+.++  
T Consensus       216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~  295 (319)
T cd00116         216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGA  295 (319)
T ss_pred             HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHH
Confidence            122334455555555442211111110   0124678888888875431    3344455667888888888876643  


Q ss_pred             --CCccccCC-CccceecccCCh
Q 039007          306 --LPEDIHHL-TTLKTLSIKECP  325 (360)
Q Consensus       306 --~~~~~~~~-~~L~~L~l~~c~  325 (360)
                        +...+... +.|+++++.++|
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         296 QLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHHHHHHhhcCCchhhcccCCCC
Confidence              33334334 577888877664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.69  E-value=4.8e-16  Score=149.30  Aligned_cols=252  Identities=23%  Similarity=0.232  Sum_probs=137.5

Q ss_pred             EEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEecc
Q 039007           15 HLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLS   94 (360)
Q Consensus        15 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~   94 (360)
                      .|++..+.+..  +++.+.  ++|+.|.+.+|.+...    +.   ..++|++|++++|.++.+|..   .++|+.|+++
T Consensus       205 ~LdLs~~~Lts--LP~~l~--~~L~~L~L~~N~Lt~L----P~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls  270 (788)
T PRK15387        205 VLNVGESGLTT--LPDCLP--AHITTLVIPDNNLTSL----PA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIF  270 (788)
T ss_pred             EEEcCCCCCCc--CCcchh--cCCCEEEccCCcCCCC----CC---CCCCCcEEEecCCccCcccCc---ccccceeecc
Confidence            45555555543  333333  3566777776665321    11   235677777777766666542   3466667776


Q ss_pred             ccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhH
Q 039007           95 RYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLF  174 (360)
Q Consensus        95 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  174 (360)
                      +| .+..+|..   ..+|+.|++.+| .+..+|..   .++|+.|++++|.+..++..   ..+|+.|++.+|. ++.+|
T Consensus       271 ~N-~L~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~-L~~LP  338 (788)
T PRK15387        271 SN-PLTHLPAL---PSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQ-LTSLP  338 (788)
T ss_pred             CC-chhhhhhc---hhhcCEEECcCC-cccccccc---ccccceeECCCCccccCCCC---cccccccccccCc-ccccc
Confidence            65 34444442   245666667665 33345532   35677777777766655431   2345566666653 33333


Q ss_pred             hhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCC
Q 039007          175 EHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLL  254 (360)
Q Consensus       175 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  254 (360)
                      ..   ..+|+.|++++|. +..+|..   .++|+.|++.++.... .+              ....+|+.|++++|. +.
T Consensus       339 ~l---p~~Lq~LdLS~N~-Ls~LP~l---p~~L~~L~Ls~N~L~~-LP--------------~l~~~L~~LdLs~N~-Lt  395 (788)
T PRK15387        339 TL---PSGLQELSVSDNQ-LASLPTL---PSELYKLWAYNNRLTS-LP--------------ALPSGLKELIVSGNR-LT  395 (788)
T ss_pred             cc---ccccceEecCCCc-cCCCCCC---Ccccceehhhcccccc-Cc--------------ccccccceEEecCCc-cc
Confidence            21   2466777777663 3344432   2456666666543221 10              011356777777765 33


Q ss_pred             CchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCCh
Q 039007          255 DLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECP  325 (360)
Q Consensus       255 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~  325 (360)
                      .+|..     .++|+.|++++|. +..+|..   ..+|+.|++++|++ +.+|..+..+++|+.|++++|+
T Consensus       396 ~LP~l-----~s~L~~LdLS~N~-LssIP~l---~~~L~~L~Ls~NqL-t~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        396 SLPVL-----PSELKELMVSGNR-LTSLPML---PSGLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             CCCCc-----ccCCCEEEccCCc-CCCCCcc---hhhhhhhhhccCcc-cccChHHhhccCCCeEECCCCC
Confidence            44432     2567777777763 4455543   23566777777663 4567667677777777777774

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.68  E-value=2.6e-16  Score=151.11  Aligned_cols=249  Identities=21%  Similarity=0.147  Sum_probs=183.4

Q ss_pred             ccccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCC
Q 039007            4 SDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIG   83 (360)
Q Consensus         4 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~   83 (360)
                      +.+..+|++++.|++..|.++.  ++   ...++|++|++++|.+...    +.   ..++|+.|+++.|.+..+|... 
T Consensus       215 sLP~~l~~~L~~L~L~~N~Lt~--LP---~lp~~Lk~LdLs~N~LtsL----P~---lp~sL~~L~Ls~N~L~~Lp~lp-  281 (788)
T PRK15387        215 TLPDCLPAHITTLVIPDNNLTS--LP---ALPPELRTLEVSGNQLTSL----PV---LPPGLLELSIFSNPLTHLPALP-  281 (788)
T ss_pred             cCCcchhcCCCEEEccCCcCCC--CC---CCCCCCcEEEecCCccCcc----cC---cccccceeeccCCchhhhhhch-
Confidence            3456677899999999998876  22   1358999999999987422    22   2357899999999988777533 


Q ss_pred             CCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEee
Q 039007           84 NLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLI  163 (360)
Q Consensus        84 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~  163 (360)
                        ..|+.|++++| .+..+|..   .++|+.|++++|. ...+|..   ..+|+.|++++|.+..+|.   ...+|+.|+
T Consensus       282 --~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~L~~LP~---lp~~Lq~Ld  348 (788)
T PRK15387        282 --SGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQLTSLPT---LPSGLQELS  348 (788)
T ss_pred             --hhcCEEECcCC-cccccccc---ccccceeECCCCc-cccCCCC---cccccccccccCccccccc---cccccceEe
Confidence              57889999988 56677753   4789999999974 4456653   2457788899998877653   235899999


Q ss_pred             ccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccc
Q 039007          164 ISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQ  243 (360)
Q Consensus       164 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  243 (360)
                      +++|. ++.+|..   .++|+.|++++|. +..+|..   .++|+.|++++|.... .+              ....+|+
T Consensus       349 LS~N~-Ls~LP~l---p~~L~~L~Ls~N~-L~~LP~l---~~~L~~LdLs~N~Lt~-LP--------------~l~s~L~  405 (788)
T PRK15387        349 VSDNQ-LASLPTL---PSELYKLWAYNNR-LTSLPAL---PSGLKELIVSGNRLTS-LP--------------VLPSELK  405 (788)
T ss_pred             cCCCc-cCCCCCC---Ccccceehhhccc-cccCccc---ccccceEEecCCcccC-CC--------------CcccCCC
Confidence            99874 4455542   3678889998875 4456653   3579999999875332 11              1124799


Q ss_pred             eEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCc
Q 039007          244 KLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPE  308 (360)
Q Consensus       244 ~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  308 (360)
                      .|++++|. +..+|..     +.+|+.|++++| .++.+|..+..+++|+.|++++|++....+.
T Consensus       406 ~LdLS~N~-LssIP~l-----~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        406 ELMVSGNR-LTSLPML-----PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             EEEccCCc-CCCCCcc-----hhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCCCchHHH
Confidence            99999987 4456643     357899999998 5778999999999999999999997765443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.65  E-value=1.5e-17  Score=148.25  Aligned_cols=259  Identities=19%  Similarity=0.083  Sum_probs=158.8

Q ss_pred             EEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCc-----ccCcCCCCCCCcCeEeccccccc------cccchhhhc
Q 039007           40 TILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIE-----VLPREIGNLKHMRYLDLSRYCQI------KKLPNSICE  108 (360)
Q Consensus        40 ~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~------~~~~~~~~~  108 (360)
                      .|+|.++.+.  +......+..+..|++|+++++.++     .++..+...++|++++++++...      ..++..+..
T Consensus         2 ~l~L~~~~l~--~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~   79 (319)
T cd00116           2 QLSLKGELLK--TERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK   79 (319)
T ss_pred             ccccccCccc--ccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence            3555555543  3444566777788999999988874     34555667777888888776332      112234455


Q ss_pred             CCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCch----hhhHhhhcCC-CCc
Q 039007          109 LQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNL----EYLFEHIGQL-SGL  183 (360)
Q Consensus       109 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~l~~l-~~L  183 (360)
                      +++|+.|++++|......+..+..+.+                   . ++|++|++++|...    ..+...+..+ ++|
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~-------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L  139 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLR-------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPAL  139 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhc-------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCc
Confidence            667777777666444333333322222                   1 33555555554332    2333445566 888


Q ss_pred             cEEEeccCCCCc----ccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCC----
Q 039007          184 RSLILVDCPSLI----SLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLD----  255 (360)
Q Consensus       184 ~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~----  255 (360)
                      ++|++++|....    .+...+..+++|++|++++|........       .........++|+.|++++|.....    
T Consensus       140 ~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~  212 (319)
T cd00116         140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR-------ALAEGLKANCNLEVLDLNNNGLTDEGASA  212 (319)
T ss_pred             eEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH-------HHHHHHHhCCCCCEEeccCCccChHHHHH
Confidence            999998886542    3444566778999999998864321100       0111123346899999999864422    


Q ss_pred             chhhhhcCCCCCCcEEecccCCCcc-ccccccc----Ccccccccccccccccc----CCCccccCCCccceecccCChh
Q 039007          256 LPQWLLQGSTKTLQFLGIEDCPNFM-ALQGSLK----DLEALETLLISACRKLS----SLPEDIHHLTTLKTLSIKECPA  326 (360)
Q Consensus       256 ~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~----~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~c~~  326 (360)
                      +....  ..+++|++|++++|.... .+.....    ..+.|++|++++|.+..    .+...+..+++|+++++++|+-
T Consensus       213 l~~~~--~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l  290 (319)
T cd00116         213 LAETL--ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF  290 (319)
T ss_pred             HHHHh--cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence            22233  577999999999986443 1211112    24799999999998652    2445566678999999999965


Q ss_pred             HHh
Q 039007          327 LWE  329 (360)
Q Consensus       327 ~~~  329 (360)
                      -..
T Consensus       291 ~~~  293 (319)
T cd00116         291 GEE  293 (319)
T ss_pred             cHH
Confidence            444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.64  E-value=1.3e-15  Score=147.10  Aligned_cols=245  Identities=20%  Similarity=0.240  Sum_probs=141.8

Q ss_pred             cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEe
Q 039007           37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLI  116 (360)
Q Consensus        37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  116 (360)
                      +..+|.++++.+...+..++      +.|+.|++++|.++.+|..+.  .+|++|++++| .+..+|..+.  .+|+.|+
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip------~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~  247 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIP------EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEME  247 (754)
T ss_pred             CceEEEeCCCCcCcCCcccc------cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEE
Confidence            45566776665432222121      356777777777776665543  46777777766 4555665432  3677777


Q ss_pred             eccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcc
Q 039007          117 LRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLIS  196 (360)
Q Consensus       117 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  196 (360)
                      +++|. +..+|..+.  .+|+.|++++|.+..+|..+.  ++|+.|++++|. ++.+|..+.  ++|+.|++++|.. ..
T Consensus       248 Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~L-t~  318 (754)
T PRK15370        248 LSINR-ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNSL-TA  318 (754)
T ss_pred             CcCCc-cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCcc-cc
Confidence            77763 335665443  367777777776665554332  467777777763 334443321  3567777777633 34


Q ss_pred             cCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccC
Q 039007          197 LPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDC  276 (360)
Q Consensus       197 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  276 (360)
                      +|..+  .++|+.|++.+|.......              .-+++|+.|++++|. +..+|..+    .+.|++|+|++|
T Consensus       319 LP~~l--~~sL~~L~Ls~N~Lt~LP~--------------~l~~sL~~L~Ls~N~-L~~LP~~l----p~~L~~LdLs~N  377 (754)
T PRK15370        319 LPETL--PPGLKTLEAGENALTSLPA--------------SLPPELQVLDVSKNQ-ITVLPETL----PPTITTLDVSRN  377 (754)
T ss_pred             CCccc--cccceeccccCCccccCCh--------------hhcCcccEEECCCCC-CCcCChhh----cCCcCEEECCCC
Confidence            45433  3567777777764332110              112467777777775 33455433    357888888877


Q ss_pred             CCcccccccccCccccccccccccccccCCCccc----cCCCccceecccCChh
Q 039007          277 PNFMALQGSLKDLEALETLLISACRKLSSLPEDI----HHLTTLKTLSIKECPA  326 (360)
Q Consensus       277 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~c~~  326 (360)
                       .+..+|..+.  +.|+.|++++|++. .+|..+    ..++.+..|++.+||-
T Consensus       378 -~Lt~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        378 -ALTNLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             -cCCCCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence             4555665443  36778888887644 444433    3346777888877764

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.60  E-value=7.4e-17  Score=151.58  Aligned_cols=271  Identities=22%  Similarity=0.271  Sum_probs=127.6

Q ss_pred             cCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccc
Q 039007           34 DLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQ  113 (360)
Q Consensus        34 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  113 (360)
                      ++-+|++|++++|.++    .+|..+..+.+|+.|.++.|.+.+.|....++.+|+++.+.++ ....+|.++..+.+|+
T Consensus        43 ~~v~L~~l~lsnn~~~----~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~  117 (1081)
T KOG0618|consen   43 KRVKLKSLDLSNNQIS----SFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQ  117 (1081)
T ss_pred             heeeeEEeeccccccc----cCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhccc
Confidence            3333555555544432    2222234444455555555544444444444555555555432 4444454455555555


Q ss_pred             eEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCC
Q 039007          114 TLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPS  193 (360)
Q Consensus       114 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  193 (360)
                      .|+++.| ....+|..+..+..+..+.+++|..  + ..++... ++.+++..+.....++..+..+++  .|++.+|..
T Consensus       118 ~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~--~-~~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~  190 (1081)
T KOG0618|consen  118 YLDLSFN-HFGPIPLVIEVLTAEEELAASNNEK--I-QRLGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEM  190 (1081)
T ss_pred             ccccchh-ccCCCchhHHhhhHHHHHhhhcchh--h-hhhcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchh
Confidence            5555543 3333444444444444444444411  0 1112222 455555555444455555555555  577777654


Q ss_pred             CcccCcccCCCCCCCEEeecCCcCccccccc----cccCCC-C--CCCCCCCCCccceEEecCccCCCCchhhhhcCCCC
Q 039007          194 LISLPSAVKCLSSSETLILIDCKSLNLNLNI----EMEGEG-S--HHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTK  266 (360)
Q Consensus       194 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~-~--~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~  266 (360)
                      .   ...+..+++|+.+....+.........    ...... .  .........++++++++.+. +..+|.|.  ..+.
T Consensus       191 ~---~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~-l~~lp~wi--~~~~  264 (1081)
T KOG0618|consen  191 E---VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNN-LSNLPEWI--GACA  264 (1081)
T ss_pred             h---hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhh-hhcchHHH--Hhcc
Confidence            3   112334445554444433222111000    000000 0  00111122256666666654 44556666  6666


Q ss_pred             CCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCC
Q 039007          267 TLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKEC  324 (360)
Q Consensus       267 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c  324 (360)
                      +|+.+....| .+..+|......++|+.|.+.+|. +.-+|.....+..|+.|++..|
T Consensus       265 nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N  320 (1081)
T KOG0618|consen  265 NLEALNANHN-RLVALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSN  320 (1081)
T ss_pred             cceEecccch-hHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhc
Confidence            6777766665 345566656666666666666665 3345555555666666666655

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.59  E-value=3.7e-15  Score=143.86  Aligned_cols=248  Identities=18%  Similarity=0.226  Sum_probs=169.6

Q ss_pred             CCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcC
Q 039007           10 PKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMR   89 (360)
Q Consensus        10 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~   89 (360)
                      ..+...|.+.+..++.  ++..+.  ++|+.|++++|.+..    ++..+  ..+|+.|++++|.++.+|..+.  ++|+
T Consensus       177 ~~~~~~L~L~~~~Lts--LP~~Ip--~~L~~L~Ls~N~Lts----LP~~l--~~nL~~L~Ls~N~LtsLP~~l~--~~L~  244 (754)
T PRK15370        177 KNNKTELRLKILGLTT--IPACIP--EQITTLILDNNELKS----LPENL--QGNIKTLYANSNQLTSIPATLP--DTIQ  244 (754)
T ss_pred             ccCceEEEeCCCCcCc--CCcccc--cCCcEEEecCCCCCc----CChhh--ccCCCEEECCCCccccCChhhh--cccc
Confidence            3456778888777665  333332  478899999888642    22222  2478999999998888876553  4789


Q ss_pred             eEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCc
Q 039007           90 YLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWN  169 (360)
Q Consensus        90 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~  169 (360)
                      .|++++| .+..+|..+.  .+|+.|++++|. +..+|..+.  ++|+.|++++|.+...|..+.  ++|+.|++++|. 
T Consensus       245 ~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-  315 (754)
T PRK15370        245 EMELSIN-RITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-  315 (754)
T ss_pred             EEECcCC-ccCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-
Confidence            9999987 4567776553  578999998764 446776553  478999999988877654432  478888888864 


Q ss_pred             hhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecC
Q 039007          170 LEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSG  249 (360)
Q Consensus       170 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  249 (360)
                      ++.+|..+  .++|+.|++++|. +..+|..+  .++|+.|++++|..... +           .  ...++|+.|++++
T Consensus       316 Lt~LP~~l--~~sL~~L~Ls~N~-Lt~LP~~l--~~sL~~L~Ls~N~L~~L-P-----------~--~lp~~L~~LdLs~  376 (754)
T PRK15370        316 LTALPETL--PPGLKTLEAGENA-LTSLPASL--PPELQVLDVSKNQITVL-P-----------E--TLPPTITTLDVSR  376 (754)
T ss_pred             cccCCccc--cccceeccccCCc-cccCChhh--cCcccEEECCCCCCCcC-C-----------h--hhcCCcCEEECCC
Confidence            34454433  3688999998884 44567655  37899999998753321 1           0  1124789999998


Q ss_pred             ccCCCCchhhhhcCCCCCCcEEecccCCCccccccc----ccCccccccccccccccc
Q 039007          250 LKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGS----LKDLEALETLLISACRKL  303 (360)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~  303 (360)
                      |. +..+|..+.    ..|+.|++++|. +..+|..    ...++.+..|++.+|++.
T Consensus       377 N~-Lt~LP~~l~----~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        377 NA-LTNLPENLP----AALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             Cc-CCCCCHhHH----HHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            86 446666542    468899999884 5555543    344588889999998864

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.59  E-value=3.5e-17  Score=140.18  Aligned_cols=135  Identities=19%  Similarity=0.189  Sum_probs=83.8

Q ss_pred             cccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeC-CCCcccCcC-C
Q 039007            5 DCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDD-STIEVLPRE-I   82 (360)
Q Consensus         5 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~-~   82 (360)
                      -+.++|+....|+|..|.++. ...++|+.+++||+|+|+.|.+   ...-++.|.+++.|..|-+.+ |+++.+|+. |
T Consensus        61 VP~~LP~~tveirLdqN~I~~-iP~~aF~~l~~LRrLdLS~N~I---s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F  136 (498)
T KOG4237|consen   61 VPANLPPETVEIRLDQNQISS-IPPGAFKTLHRLRRLDLSKNNI---SFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF  136 (498)
T ss_pred             CcccCCCcceEEEeccCCccc-CChhhccchhhhceecccccch---hhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence            356677777777777777777 6677777777777777777776   344456677777666665554 566666653 5


Q ss_pred             CCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCc-cccccccccEEEEecc
Q 039007           83 GNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPK-DIRYLVSLRMFVVTTK  144 (360)
Q Consensus        83 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~  144 (360)
                      ..+..|+.|.+.-|...-.....+..+++|..|.+.+| ....++. .+..+..++.+.+..|
T Consensus       137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~n  198 (498)
T KOG4237|consen  137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQN  198 (498)
T ss_pred             hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcC
Confidence            66666666666655322223344556666666666664 4444443 3455555555555444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.58  E-value=2.8e-17  Score=125.34  Aligned_cols=165  Identities=24%  Similarity=0.366  Sum_probs=131.0

Q ss_pred             hccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCc
Q 039007           32 LSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQS  111 (360)
Q Consensus        32 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  111 (360)
                      +-.+.++..|.+++|.+.    .++..+..+.+|++|.+.+|+++++|..++.+++|+.|+++-| .+..+|.+|+.++.
T Consensus        29 Lf~~s~ITrLtLSHNKl~----~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~  103 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT----VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPA  103 (264)
T ss_pred             ccchhhhhhhhcccCcee----ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCch
Confidence            445567778888888863    2233366778888999999988899988999999999998876 66778888999999


Q ss_pred             cceEeeccccCc-CcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEecc
Q 039007          112 LQTLILRGCLKL-EELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVD  190 (360)
Q Consensus       112 L~~L~l~~~~~~-~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  190 (360)
                      |+.|++.+|+.. ..+|..+-.+.-|+.|+++.|.+...|..++++++|+.|.+.+| .+-.+|..++.++.|++|.+.+
T Consensus       104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHHHHHHHHHHHHhccc
Confidence            999999887655 36788888888889999999988888888999999999998886 4456788888899999999988


Q ss_pred             CCCCcccCcccCC
Q 039007          191 CPSLISLPSAVKC  203 (360)
Q Consensus       191 ~~~~~~~~~~~~~  203 (360)
                      | .++.+|+.++.
T Consensus       183 n-rl~vlppel~~  194 (264)
T KOG0617|consen  183 N-RLTVLPPELAN  194 (264)
T ss_pred             c-eeeecChhhhh
Confidence            7 44556655443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.57  E-value=4e-17  Score=124.54  Aligned_cols=177  Identities=21%  Similarity=0.320  Sum_probs=148.0

Q ss_pred             CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCe
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRY   90 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~   90 (360)
                      .++++|.+++|.+..  +++.++.+.+|++|++++|.+    ..+|..+..+++|+.|.+.-|.+..+|..|+.+|.|+.
T Consensus        33 s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqi----e~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev  106 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQI----EELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV  106 (264)
T ss_pred             hhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchh----hhcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence            578899999998876  788999999999999999985    34566688999999999999999999999999999999


Q ss_pred             Eecccccccc-ccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCc
Q 039007           91 LDLSRYCQIK-KLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWN  169 (360)
Q Consensus        91 L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~  169 (360)
                      |++.+|...+ .+|..|..+..|+.|++++| -.+.+|..++++++|+.|.+..|..-..|..++.++.|++|++.+| .
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn-r  184 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN-R  184 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc-e
Confidence            9999885444 47888989999999999997 5567899999999999999999999888999999999999999997 4


Q ss_pred             hhhhHhhhcCCCCc---cEEEeccCCCCc
Q 039007          170 LEYLFEHIGQLSGL---RSLILVDCPSLI  195 (360)
Q Consensus       170 ~~~~~~~l~~l~~L---~~L~l~~~~~~~  195 (360)
                      ++.+|+.++.+.-+   +.+.+..|+...
T Consensus       185 l~vlppel~~l~l~~~k~v~r~E~NPwv~  213 (264)
T KOG0617|consen  185 LTVLPPELANLDLVGNKQVMRMEENPWVN  213 (264)
T ss_pred             eeecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence            56666666554322   234445554443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.51  E-value=2e-14  Score=140.99  Aligned_cols=266  Identities=28%  Similarity=0.364  Sum_probs=176.7

Q ss_pred             CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCC-CcccCcCCCCCCCcC
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDST-IEVLPREIGNLKHMR   89 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~   89 (360)
                      ..+|+.++.++.+..   ...-..++.|++|.+.+|.. ........+|..++.|++||+++|. +..+|..++.+-+||
T Consensus       523 ~~~rr~s~~~~~~~~---~~~~~~~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr  598 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEH---IAGSSENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR  598 (889)
T ss_pred             hheeEEEEeccchhh---ccCCCCCCccceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence            578999999887765   33345666899999998862 1144555679999999999999876 669999999999999


Q ss_pred             eEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEecccccccc---ccCCCCCCCcEeeccC
Q 039007           90 YLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQE---SGIACLSSLRSLIISH  166 (360)
Q Consensus        90 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~---~~~~~l~~L~~L~l~~  166 (360)
                      +|++++. .+..+|.++.++..|.+|++..+.....+|.....+.+|++|.+.........   ..+.++..|+.+.+..
T Consensus       599 yL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  599 YLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             cccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            9999975 78899999999999999999987777777777778999999999876533322   2334445555554433


Q ss_pred             CCchhhhHhhhcCCCCcc----EEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCC-CCCc
Q 039007          167 CWNLEYLFEHIGQLSGLR----SLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDN-TRTH  241 (360)
Q Consensus       167 ~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  241 (360)
                      ...  .+...+..++.|.    .+.+.++ .....+..+..+.+|+.|.+.+|..........      ...... .+++
T Consensus       678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~-~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~------~~~~~~~~f~~  748 (889)
T KOG4658|consen  678 SSV--LLLEDLLGMTRLRSLLQSLSIEGC-SKRTLISSLGSLGNLEELSILDCGISEIVIEWE------ESLIVLLCFPN  748 (889)
T ss_pred             chh--HhHhhhhhhHHHHHHhHhhhhccc-ccceeecccccccCcceEEEEcCCCchhhcccc------cccchhhhHHH
Confidence            211  2222233444444    2332232 333445667788999999999988754322000      000011 2345


Q ss_pred             cceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccc
Q 039007          242 LQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALE  293 (360)
Q Consensus       242 L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~  293 (360)
                      +.++....|....+.. |.  ...|+|+.|.+..|..++++......+..++
T Consensus       749 l~~~~~~~~~~~r~l~-~~--~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~  797 (889)
T KOG4658|consen  749 LSKVSILNCHMLRDLT-WL--LFAPHLTSLSLVSCRLLEDIIPKLKALLELK  797 (889)
T ss_pred             HHHHHhhccccccccc-hh--hccCcccEEEEecccccccCCCHHHHhhhcc
Confidence            6666666665554433 33  4568888888888877776554444444444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.47  E-value=1.3e-15  Score=131.61  Aligned_cols=301  Identities=16%  Similarity=0.161  Sum_probs=189.5

Q ss_pred             cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCC-Cc--ccCcCCCCCCCcCeEeccccccccccc-h-hhhcCCc
Q 039007           37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDST-IE--VLPREIGNLKHMRYLDLSRYCQIKKLP-N-SICELQS  111 (360)
Q Consensus        37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~-~-~~~~l~~  111 (360)
                      .|+.|.+.|+. ......+.....+|++++.|.+.+|. ++  ..-..-..|++|++|++..|..++... . ....+++
T Consensus       139 ~lk~LSlrG~r-~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  139 FLKELSLRGCR-AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             ccccccccccc-cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            56777777665 34444555556667777777666665 33  222223456777777777665554432 2 2235777


Q ss_pred             cceEeeccccCcCc--CCccccccccccEEEEeccccccc---cccCCCCCCCcEeeccCCCchh--hhHhhhcCCCCcc
Q 039007          112 LQTLILRGCLKLEE--LPKDIRYLVSLRMFVVTTKQKSLQ---ESGIACLSSLRSLIISHCWNLE--YLFEHIGQLSGLR  184 (360)
Q Consensus       112 L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~  184 (360)
                      |+++++++|..+..  +......++.++.+...++.-...   ...-.++..+-.+++..|..++  .+...-..+..|+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            77777777654432  222234455555554444432211   1222344555566666665544  3344455678888


Q ss_pred             EEEeccCCCCccc--CcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhc
Q 039007          185 SLILVDCPSLISL--PSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQ  262 (360)
Q Consensus       185 ~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~  262 (360)
                      .|..++|...+..  .+...++++|+.+-+..|+..+...         .......+++|+.+++.++....+-...-.+
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~---------ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls  368 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG---------FTMLGRNCPHLERLDLEECGLITDGTLASLS  368 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh---------hhhhhcCChhhhhhcccccceehhhhHhhhc
Confidence            8888888765533  2345678888888888888765444         3445567778888888888766555333334


Q ss_pred             CCCCCCcEEecccCCCcccc-----cccccCccccccccccccccccC-CCccccCCCccceecccCChhHHhhcCCCCC
Q 039007          263 GSTKTLQFLGIEDCPNFMAL-----QGSLKDLEALETLLISACRKLSS-LPEDIHHLTTLKTLSIKECPALWERCKPLTG  336 (360)
Q Consensus       263 ~~~~~L~~L~L~~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~  336 (360)
                      .+++.|+.+.+++|..+++-     .....+...|..+++++|+.+++ ..+.+..+++|+.+++.+|..+++.....  
T Consensus       369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~--  446 (483)
T KOG4341|consen  369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISR--  446 (483)
T ss_pred             cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHH--
Confidence            68999999999999877643     33345678899999999997764 45667789999999999998777553332  


Q ss_pred             CCCccccccceeeeccc
Q 039007          337 EDWSKIARIPRIMLDDE  353 (360)
Q Consensus       337 ~~~~~~~~l~~~~~~~~  353 (360)
                          ...|+|+++++..
T Consensus       447 ----~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  447 ----FATHLPNIKVHAY  459 (483)
T ss_pred             ----HHhhCccceehhh
Confidence                2456777777553

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.38  E-value=9.3e-15  Score=125.46  Aligned_cols=273  Identities=19%  Similarity=0.131  Sum_probs=172.0

Q ss_pred             cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCccc-CcCCCCCCCcCeEeccccccccccch-hhhcCCccce
Q 039007           37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVL-PREIGNLKHMRYLDLSRYCQIKKLPN-SICELQSLQT  114 (360)
Q Consensus        37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~  114 (360)
                      .-..+.|..|.+   ...++.+|..+++|+.|+++.|.++.+ |..|+.++.|..|-+.++..++.+|. .|.++..|+.
T Consensus        68 ~tveirLdqN~I---~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr  144 (498)
T KOG4237|consen   68 ETVEIRLDQNQI---SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR  144 (498)
T ss_pred             cceEEEeccCCc---ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence            456677777776   556677788888888888888888844 66788888877777766557777774 4667888888


Q ss_pred             EeeccccCcCcCC-ccccccccccEEEEeccccccccc-cCCCCCCCcEeeccCCCchh-----hhH-------hhhcCC
Q 039007          115 LILRGCLKLEELP-KDIRYLVSLRMFVVTTKQKSLQES-GIACLSSLRSLIISHCWNLE-----YLF-------EHIGQL  180 (360)
Q Consensus       115 L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~-----~~~-------~~l~~l  180 (360)
                      |.+..|. +..++ +.+..++++..|.+..|.+..+.. .+..+..++.+.+..|..+-     +..       -..+..
T Consensus       145 LllNan~-i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga  223 (498)
T KOG4237|consen  145 LLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA  223 (498)
T ss_pred             HhcChhh-hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence            8887653 33333 456778888888888887776643 67777777777776654211     110       011111


Q ss_pred             CCccEEEeccCCCCcccCc--ccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchh
Q 039007          181 SGLRSLILVDCPSLISLPS--AVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQ  258 (360)
Q Consensus       181 ~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  258 (360)
                      .-.....+.+.+. ..+.+  +.+....+.+--.+.|...         +.. ....+..+++|++|+|++|+....-..
T Consensus       224 rc~~p~rl~~~Ri-~q~~a~kf~c~~esl~s~~~~~d~~d---------~~c-P~~cf~~L~~L~~lnlsnN~i~~i~~~  292 (498)
T KOG4237|consen  224 RCVSPYRLYYKRI-NQEDARKFLCSLESLPSRLSSEDFPD---------SIC-PAKCFKKLPNLRKLNLSNNKITRIEDG  292 (498)
T ss_pred             eecchHHHHHHHh-cccchhhhhhhHHhHHHhhccccCcC---------CcC-hHHHHhhcccceEeccCCCccchhhhh
Confidence            1111111111110 01110  0111001100001111111         111 111256677999999999986655556


Q ss_pred             hhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCChh
Q 039007          259 WLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPA  326 (360)
Q Consensus       259 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  326 (360)
                      ++  .....+++|.|..|..-..-...|.++..|+.|++.+|++....|..|..+..|..|++-+||-
T Consensus       293 aF--e~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  293 AF--EGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             hh--cchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            66  7889999999999843333344689999999999999999888888899999999999988764

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.34  E-value=4.1e-14  Score=122.41  Aligned_cols=285  Identities=19%  Similarity=0.204  Sum_probs=199.9

Q ss_pred             EEEEeccCCCCcccchHHHhhcCC-CccEEEEeCCCCc---ccCcCCCCCCCcCeEeccccccccccc-hhh-hcCCccc
Q 039007           40 TILFSINDENTSESFFTSCISKSQ-FLRVLDLDDSTIE---VLPREIGNLKHMRYLDLSRYCQIKKLP-NSI-CELQSLQ  113 (360)
Q Consensus        40 ~L~l~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~-~~l~~L~  113 (360)
                      ++++..-.....+..+...+..|- .|+.|.++++.-.   .+-.....+|+++.|.+.+|..+++.. ..+ ..|++|+
T Consensus       114 ~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~  193 (483)
T KOG4341|consen  114 HIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLR  193 (483)
T ss_pred             eeehhcchhcCCCcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhh
Confidence            344443322233444445555553 6889999988633   333345789999999999998776532 223 3689999


Q ss_pred             eEeeccccCcCcC--CccccccccccEEEEeccccc---cccccCCCCCCCcEeeccCCCchh--hhHhhhcCCCCccEE
Q 039007          114 TLILRGCLKLEEL--PKDIRYLVSLRMFVVTTKQKS---LQESGIACLSSLRSLIISHCWNLE--YLFEHIGQLSGLRSL  186 (360)
Q Consensus       114 ~L~l~~~~~~~~~--p~~~~~l~~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L  186 (360)
                      .+++..|..++..  ......+++|++++++.+.--   .+.....++..++.+...+|...+  .+...-+.+.-+.++
T Consensus       194 ~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~l  273 (483)
T KOG4341|consen  194 HLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKL  273 (483)
T ss_pred             hhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhcc
Confidence            9999987655432  123467899999999887432   222345667778888777776544  344444566777788


Q ss_pred             EeccCCCCcc--cCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCC
Q 039007          187 ILVDCPSLIS--LPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGS  264 (360)
Q Consensus       187 ~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~  264 (360)
                      ++..|..+++  +...-..+..|+.++.++|.......         .......+++|+.+.+.+|+.+++.....++.+
T Consensus       274 nl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~---------l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn  344 (483)
T KOG4341|consen  274 NLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEV---------LWALGQHCHNLQVLELSGCQQFSDRGFTMLGRN  344 (483)
T ss_pred             chhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHH---------HHHHhcCCCceEEEeccccchhhhhhhhhhhcC
Confidence            8777755543  23334568899999999998765443         344566778999999999999998888877789


Q ss_pred             CCCCcEEecccCCCcc--cccccccCccccccccccccccccCC-----CccccCCCccceecccCChhHHhhcCC
Q 039007          265 TKTLQFLGIEDCPNFM--ALQGSLKDLEALETLLISACRKLSSL-----PEDIHHLTTLKTLSIKECPALWERCKP  333 (360)
Q Consensus       265 ~~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~c~~~~~~~~~  333 (360)
                      ++.|+.+++..|....  .+.+.-.+|+.|+.+.+++|..+++-     ...-.+...|+.+.+++||.+++...+
T Consensus       345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le  420 (483)
T KOG4341|consen  345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE  420 (483)
T ss_pred             ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH
Confidence            9999999999997666  34455578999999999999877753     222334578999999999999977433

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.30  E-value=8.1e-13  Score=112.05  Aligned_cols=244  Identities=20%  Similarity=0.179  Sum_probs=144.7

Q ss_pred             chhhhhccCccccEEEEeccCCC-CcccchHHHhhcCCCccEEEEeCCC---Cc-ccCcC-------CCCCCCcCeEecc
Q 039007           27 DFSSLLSDLRRVRTILFSINDEN-TSESFFTSCISKSQFLRVLDLDDST---IE-VLPRE-------IGNLKHMRYLDLS   94 (360)
Q Consensus        27 ~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~---~~-~~~~~-------~~~l~~L~~L~l~   94 (360)
                      .+.+.......+..|++++|.++ .....+...+.+.+.|++.++++--   .. .+|+.       +..+++|++|+++
T Consensus        21 ~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS  100 (382)
T KOG1909|consen   21 DVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS  100 (382)
T ss_pred             hHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence            56667788889999999999886 3334566778888888888888642   11 44443       4567899999999


Q ss_pred             ccccccccch----hhhcCCccceEeeccccCcCcCC-------------ccccccccccEEEEecccccccc-----cc
Q 039007           95 RYCQIKKLPN----SICELQSLQTLILRGCLKLEELP-------------KDIRYLVSLRMFVVTTKQKSLQE-----SG  152 (360)
Q Consensus        95 ~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~p-------------~~~~~l~~L~~L~l~~~~~~~~~-----~~  152 (360)
                      +|......+.    -+.++..|++|.+.+|.+...--             ..++.-++|+.+.+.+|++...+     ..
T Consensus       101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~  180 (382)
T KOG1909|consen  101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEA  180 (382)
T ss_pred             ccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHH
Confidence            8855544433    34568899999998874332110             11233456777777766665432     33


Q ss_pred             CCCCCCCcEeeccCCCc----hhhhHhhhcCCCCccEEEeccCCCCc----ccCcccCCCCCCCEEeecCCcCccccccc
Q 039007          153 IACLSSLRSLIISHCWN----LEYLFEHIGQLSGLRSLILVDCPSLI----SLPSAVKCLSSSETLILIDCKSLNLNLNI  224 (360)
Q Consensus       153 ~~~l~~L~~L~l~~~~~----~~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  224 (360)
                      +...+.|+.+.+..|..    .+.+...+..|++|++|++..|.+..    .+...++.+++|+.|.+++|..-..    
T Consensus       181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~----  256 (382)
T KOG1909|consen  181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE----  256 (382)
T ss_pred             HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccc----
Confidence            45556666666665532    22344555666666666666664322    2233344555666666655532110    


Q ss_pred             cccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcc----cccccccCcccccccccccc
Q 039007          225 EMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFM----ALQGSLKDLEALETLLISAC  300 (360)
Q Consensus       225 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~l~~~  300 (360)
                                                 ....+...+. ...|+|+.|.+.+|....    .+.......|.|+.|+|++|
T Consensus       257 ---------------------------Ga~a~~~al~-~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN  308 (382)
T KOG1909|consen  257 ---------------------------GAIAFVDALK-ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN  308 (382)
T ss_pred             ---------------------------cHHHHHHHHh-ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence                                       1112222221 356777777777775443    22233455677777777777


Q ss_pred             cc
Q 039007          301 RK  302 (360)
Q Consensus       301 ~~  302 (360)
                      ..
T Consensus       309 ~l  310 (382)
T KOG1909|consen  309 RL  310 (382)
T ss_pred             cc
Confidence            75

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.30  E-value=1.7e-12  Score=127.66  Aligned_cols=269  Identities=26%  Similarity=0.253  Sum_probs=171.8

Q ss_pred             CcceEEEeeecc--ccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCc
Q 039007           11 KRVRHLSFVSAS--ASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHM   88 (360)
Q Consensus        11 ~~l~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L   88 (360)
                      +.+++|-+..+.  +.. .....|..++.|++|++++|.-   ...+|..+..+-+|++|+++++.+..+|..++++..|
T Consensus       545 ~~L~tLll~~n~~~l~~-is~~ff~~m~~LrVLDLs~~~~---l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLE-ISGEFFRSLPLLRVLDLSGNSS---LSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKL  620 (889)
T ss_pred             CccceEEEeecchhhhh-cCHHHHhhCcceEEEECCCCCc---cCcCChHHhhhhhhhcccccCCCccccchHHHHHHhh
Confidence            478899998886  433 4455699999999999999764   6678889999999999999999999999999999999


Q ss_pred             CeEeccccccccccchhhhcCCccceEeeccccCc--CcCCccccccccccEEEEeccccccccccCCCCCCCc----Ee
Q 039007           89 RYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKL--EELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLR----SL  162 (360)
Q Consensus        89 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~----~L  162 (360)
                      .+|++........+|.....+.+||+|.+..-...  ...-..+..+..|+.+....... .+...+..++.|.    .+
T Consensus       621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l  699 (889)
T KOG4658|consen  621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSL  699 (889)
T ss_pred             heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhh
Confidence            99999987666666665667999999999763211  11112334445555555433322 1112223333333    23


Q ss_pred             eccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcc-----cCC-CCCCCEEeecCCcCccccccccccCCCCCCCCC
Q 039007          163 IISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSA-----VKC-LSSSETLILIDCKSLNLNLNIEMEGEGSHHDRD  236 (360)
Q Consensus       163 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  236 (360)
                      .+.+ ......+..+..+.+|+.|.+..|...+.....     ... ++++..+...+|.......+            .
T Consensus       700 ~~~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~------------~  766 (889)
T KOG4658|consen  700 SIEG-CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTW------------L  766 (889)
T ss_pred             hhcc-cccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccch------------h
Confidence            3222 233344566778899999999998765432222     111 44555555666655443321            2


Q ss_pred             CCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCccc-ccccccCccccccccccc
Q 039007          237 NTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMA-LQGSLKDLEALETLLISA  299 (360)
Q Consensus       237 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~l~~  299 (360)
                      ...++|+.|++..|....++.+..  ..+..++++.+..+..-.- .....++++++..+.+.+
T Consensus       767 ~f~~~L~~l~l~~~~~~e~~i~~~--k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~  828 (889)
T KOG4658|consen  767 LFAPHLTSLSLVSCRLLEDIIPKL--KALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSF  828 (889)
T ss_pred             hccCcccEEEEecccccccCCCHH--HHhhhcccEEecccccccceeeecCCCCceeEecccCc
Confidence            455789999999998887776665  5555566544444322111 122344444444444443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=1.7e-12  Score=107.86  Aligned_cols=180  Identities=16%  Similarity=0.178  Sum_probs=136.8

Q ss_pred             ccccEEEEeccccccc--cccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccC--cccCCCCCCCE
Q 039007          134 VSLRMFVVTTKQKSLQ--ESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLP--SAVKCLSSSET  209 (360)
Q Consensus       134 ~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~  209 (360)
                      ..|++++++...++..  ...+..|.+|+.|.+.++...+.+...++.-.+|+.|+++.|...+...  -.+.+|+.|..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            3688999988766532  3467789999999999988878888888889999999999998776543  34678999999


Q ss_pred             EeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccC---CCCchhhhhcCCCCCCcEEecccCCCcc-ccccc
Q 039007          210 LILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQ---LLDLPQWLLQGSTKTLQFLGIEDCPNFM-ALQGS  285 (360)
Q Consensus       210 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~---~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~  285 (360)
                      |.+++|.......         ........++|+.|+|+|+..   ..++....  ..||+|..|+|++|..+. +....
T Consensus       265 LNlsWc~l~~~~V---------tv~V~hise~l~~LNlsG~rrnl~~sh~~tL~--~rcp~l~~LDLSD~v~l~~~~~~~  333 (419)
T KOG2120|consen  265 LNLSWCFLFTEKV---------TVAVAHISETLTQLNLSGYRRNLQKSHLSTLV--RRCPNLVHLDLSDSVMLKNDCFQE  333 (419)
T ss_pred             cCchHhhccchhh---------hHHHhhhchhhhhhhhhhhHhhhhhhHHHHHH--HhCCceeeeccccccccCchHHHH
Confidence            9999987655433         112223335899999998742   23343333  789999999999998887 66667


Q ss_pred             ccCcccccccccccccccc-CCCccccCCCccceecccCC
Q 039007          286 LKDLEALETLLISACRKLS-SLPEDIHHLTTLKTLSIKEC  324 (360)
Q Consensus       286 ~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~c  324 (360)
                      +.+++.|++|.++.|..+. ..-..+.+.|+|.+|++.+|
T Consensus       334 ~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  334 FFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             HHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            8899999999999998654 12233667899999999998

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=1.1e-10  Score=101.95  Aligned_cols=181  Identities=15%  Similarity=0.062  Sum_probs=105.5

Q ss_pred             cceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcC--CCCCCCcC
Q 039007           12 RVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPRE--IGNLKHMR   89 (360)
Q Consensus        12 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~l~~L~   89 (360)
                      .++.+++.+++++........+.|++++.|+|++|-+. ....+......+++|+.|.++.|.+.....+  -..+++|+
T Consensus       122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK  200 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH-NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK  200 (505)
T ss_pred             hhhheeecCccccccchhhhhhhCCcceeecchhhhHH-hHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence            45666666666555222246677777888888877652 2333555677777888888877775522111  12456777


Q ss_pred             eEeccccccccc-cchhhhcCCccceEeeccccCcCcCCccccccccccEEEEecccccccc--ccCCCCCCCcEeeccC
Q 039007           90 YLDLSRYCQIKK-LPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQE--SGIACLSSLRSLIISH  166 (360)
Q Consensus        90 ~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~  166 (360)
                      .|.++.|..... +......+|+|+.|++.+|............+..|+.|++++|.+-..+  ..++.++.|+.|.++.
T Consensus       201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~  280 (505)
T KOG3207|consen  201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS  280 (505)
T ss_pred             eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc
Confidence            777777754432 2233345777777777776422211122334566777777777665543  4566677777777776


Q ss_pred             CCchh-hhHhh-----hcCCCCccEEEeccCCC
Q 039007          167 CWNLE-YLFEH-----IGQLSGLRSLILVDCPS  193 (360)
Q Consensus       167 ~~~~~-~~~~~-----l~~l~~L~~L~l~~~~~  193 (360)
                      |...+ ..|..     ....++|+.|++..|+.
T Consensus       281 tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  281 TGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             cCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            53322 12221     23456777777777654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.00  E-value=6.5e-11  Score=100.66  Aligned_cols=238  Identities=17%  Similarity=0.130  Sum_probs=132.6

Q ss_pred             hHHHhhcCCCccEEEEeCCCCc-----ccCcCCCCCCCcCeEeccccccc----cccchh-------hhcCCccceEeec
Q 039007           55 FTSCISKSQFLRVLDLDDSTIE-----VLPREIGNLKHMRYLDLSRYCQI----KKLPNS-------ICELQSLQTLILR  118 (360)
Q Consensus        55 ~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~-------~~~l~~L~~L~l~  118 (360)
                      +......+..+.++++++|.+.     .+.+.+.+-++|+..++++- ..    .++|..       +..+++|+.++|+
T Consensus        22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS  100 (382)
T KOG1909|consen   22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLS  100 (382)
T ss_pred             HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence            4445666777888888888765     23445566667777777753 22    233332       2245677777777


Q ss_pred             cccCcCcCCcc----ccccccccEEEEecccccccc--------------ccCCCCCCCcEeeccCCCc----hhhhHhh
Q 039007          119 GCLKLEELPKD----IRYLVSLRMFVVTTKQKSLQE--------------SGIACLSSLRSLIISHCWN----LEYLFEH  176 (360)
Q Consensus       119 ~~~~~~~~p~~----~~~l~~L~~L~l~~~~~~~~~--------------~~~~~l~~L~~L~l~~~~~----~~~~~~~  176 (360)
                      +|-+....++.    +..+..|++|++.+|.+....              ......+.|+.+.+..|..    -+.+...
T Consensus       101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~  180 (382)
T KOG1909|consen  101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEA  180 (382)
T ss_pred             ccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHH
Confidence            76444333322    345566666666666543221              1122334444444444321    1133333


Q ss_pred             hcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCc
Q 039007          177 IGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDL  256 (360)
Q Consensus       177 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~  256 (360)
                      ++..+.|+.+.+..|.                        ......       -.....+.++++|+.|+|.+|.....-
T Consensus       181 ~~~~~~leevr~~qN~------------------------I~~eG~-------~al~eal~~~~~LevLdl~DNtft~eg  229 (382)
T KOG1909|consen  181 FQSHPTLEEVRLSQNG------------------------IRPEGV-------TALAEALEHCPHLEVLDLRDNTFTLEG  229 (382)
T ss_pred             HHhccccceEEEeccc------------------------ccCchh-------HHHHHHHHhCCcceeeecccchhhhHH
Confidence            4444444444444443                        221111       001223445555666666665444322


Q ss_pred             ----hhhhhcCCCCCCcEEecccCCCcc----cccccc-cCccccccccccccccccC----CCccccCCCccceecccC
Q 039007          257 ----PQWLLQGSTKTLQFLGIEDCPNFM----ALQGSL-KDLEALETLLISACRKLSS----LPEDIHHLTTLKTLSIKE  323 (360)
Q Consensus       257 ----~~~~~~~~~~~L~~L~L~~~~~~~----~~~~~~-~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~  323 (360)
                          ...+  ..++.|+.|++.+|..-+    .+...+ ...|+|+.|++.+|.+..+    +...+...|.|+.|+|++
T Consensus       230 s~~LakaL--~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng  307 (382)
T KOG1909|consen  230 SVALAKAL--SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG  307 (382)
T ss_pred             HHHHHHHh--cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence                2233  567889999999995544    222222 3479999999999997653    334455689999999999


Q ss_pred             Chh
Q 039007          324 CPA  326 (360)
Q Consensus       324 c~~  326 (360)
                      |..
T Consensus       308 N~l  310 (382)
T KOG1909|consen  308 NRL  310 (382)
T ss_pred             ccc
Confidence            964

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.98  E-value=5.2e-10  Score=88.89  Aligned_cols=108  Identities=23%  Similarity=0.325  Sum_probs=29.0

Q ss_pred             hccCccccEEEEeccCCCCcccchHHHhh-cCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhh-hcC
Q 039007           32 LSDLRRVRTILFSINDENTSESFFTSCIS-KSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSI-CEL  109 (360)
Q Consensus        32 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l  109 (360)
                      +.++.++++|++.+|.+..    +.. +. .+.+|+.|++++|.++.+. .+..+++|++|++++| .++.++..+ ..+
T Consensus        15 ~~n~~~~~~L~L~~n~I~~----Ie~-L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~l   87 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIST----IEN-LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNL   87 (175)
T ss_dssp             -------------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-
T ss_pred             ccccccccccccccccccc----ccc-hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhC
Confidence            4445566777777776531    111 22 3556777777777766553 4556677777777766 444444333 346


Q ss_pred             CccceEeeccccCcCcCC--ccccccccccEEEEeccccc
Q 039007          110 QSLQTLILRGCLKLEELP--KDIRYLVSLRMFVVTTKQKS  147 (360)
Q Consensus       110 ~~L~~L~l~~~~~~~~~p--~~~~~l~~L~~L~l~~~~~~  147 (360)
                      ++|++|++++|.+. .+-  ..+..+++|+.|++.+|.+.
T Consensus        88 p~L~~L~L~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   88 PNLQELYLSNNKIS-DLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCEEECcCCcCC-ChHHhHHHHcCCCcceeeccCCccc
Confidence            77777777665332 221  23445556666666555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=6.3e-11  Score=98.70  Aligned_cols=203  Identities=17%  Similarity=0.182  Sum_probs=122.0

Q ss_pred             CcceEEEeeeccccccchhhhhccC-ccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCc-ccCcCCCCCCCc
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDL-RRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIE-VLPREIGNLKHM   88 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L   88 (360)
                      +.|..+++-..-+.+..+.+.+.-+ .+|+.|++++..+.  ...+...+.+|.+|+.|.+.++.+. .+...+.+-.+|
T Consensus       159 rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it--~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L  236 (419)
T KOG2120|consen  159 RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVIT--VSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNL  236 (419)
T ss_pred             CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhhee--HHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccc
Confidence            3344555544333332244444444 36888888877654  5567788888888998888888877 455566777888


Q ss_pred             CeEeccccccccccc--hhhhcCCccceEeeccccCcCcCC-ccccc-cccccEEEEeccccccc----cccCCCCCCCc
Q 039007           89 RYLDLSRYCQIKKLP--NSICELQSLQTLILRGCLKLEELP-KDIRY-LVSLRMFVVTTKQKSLQ----ESGIACLSSLR  160 (360)
Q Consensus        89 ~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~-l~~L~~L~l~~~~~~~~----~~~~~~l~~L~  160 (360)
                      +.|+++.|..+++..  -.+.+|+.|++|+++.|...+... ..+.. -.+|..|+++++.....    .--...+++|.
T Consensus       237 ~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~  316 (419)
T KOG2120|consen  237 VRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLV  316 (419)
T ss_pred             eeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCcee
Confidence            888888887666543  235678888888888886544321 11222 24667777777654322    11234567777


Q ss_pred             EeeccCCCchh-hhHhhhcCCCCccEEEeccCCCCc-ccCcccCCCCCCCEEeecCC
Q 039007          161 SLIISHCWNLE-YLFEHIGQLSGLRSLILVDCPSLI-SLPSAVKCLSSSETLILIDC  215 (360)
Q Consensus       161 ~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~  215 (360)
                      +||+++|..++ .....+.+++.|+.|.++.|-.+. ...-.+...|.|.+|++.+|
T Consensus       317 ~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  317 HLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            77777665444 344455566666666666664322 11112344556666655554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=6.9e-11  Score=103.28  Aligned_cols=133  Identities=20%  Similarity=0.171  Sum_probs=60.1

Q ss_pred             CCCCcCeEeccccccccccch--hhhcCCccceEeeccccCcCc---CCccccccccccEEEEeccccccccc--cCCCC
Q 039007           84 NLKHMRYLDLSRYCQIKKLPN--SICELQSLQTLILRGCLKLEE---LPKDIRYLVSLRMFVVTTKQKSLQES--GIACL  156 (360)
Q Consensus        84 ~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~---~p~~~~~l~~L~~L~l~~~~~~~~~~--~~~~l  156 (360)
                      ++.+|+...+.++ .+...+.  -...|++++.|+++.| +...   +...+..+++|+.|+++.|.+....+  ....+
T Consensus       119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            4555555555543 3333331  2334566666666654 2221   12234455666666666555443311  11234


Q ss_pred             CCCcEeeccCCCchh-hhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCc
Q 039007          157 SSLRSLIISHCWNLE-YLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSL  218 (360)
Q Consensus       157 ~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  218 (360)
                      +.|+.|.+..|.... .+-..+..+|+|+.|++.+|............+..|+.|++++++.+
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li  259 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI  259 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc
Confidence            555555555553322 22233344556666666555322211112223345555555555544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.97  E-value=5.5e-10  Score=88.74  Aligned_cols=128  Identities=27%  Similarity=0.324  Sum_probs=48.6

Q ss_pred             hhcCCCccEEEEeCCCCcccCcCCC-CCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccc-cccccc
Q 039007           59 ISKSQFLRVLDLDDSTIEVLPREIG-NLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDI-RYLVSL  136 (360)
Q Consensus        59 ~~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~-~~l~~L  136 (360)
                      +.++.++++|++.++.++.+. .+. .+.+|+.|++++| .+..+.. +..++.|+.|++++| .+..+...+ ..+++|
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~~-l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L   90 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNN-QITKLEG-LPGLPRLKTLDLSNN-RISSISEGLDKNLPNL   90 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred             ccccccccccccccccccccc-chhhhhcCCCEEECCCC-CCccccC-ccChhhhhhcccCCC-CCCccccchHHhCCcC
Confidence            445567888889888888663 444 5788888999887 5555543 777888899988886 444565444 357888


Q ss_pred             cEEEEeccccccc--cccCCCCCCCcEeeccCCCchh---hhHhhhcCCCCccEEEecc
Q 039007          137 RMFVVTTKQKSLQ--ESGIACLSSLRSLIISHCWNLE---YLFEHIGQLSGLRSLILVD  190 (360)
Q Consensus       137 ~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~---~~~~~l~~l~~L~~L~l~~  190 (360)
                      ++|++++|.+...  ...+..+++|+.|++.+|....   +-...+..+|+|+.||-..
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            9999888887654  2456678888888888875432   3344566788888887544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.95  E-value=2.7e-11  Score=109.13  Aligned_cols=170  Identities=27%  Similarity=0.316  Sum_probs=88.3

Q ss_pred             cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEe
Q 039007           37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLI  116 (360)
Q Consensus        37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  116 (360)
                      .-...+++.|.+.    .++..+..|..|+.+.++.|.+..+|..+.++..|.+|+++.| .+..+|..+..|+ |+.|-
T Consensus        76 dt~~aDlsrNR~~----elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   76 DTVFADLSRNRFS----ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLI  149 (722)
T ss_pred             chhhhhccccccc----cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEE
Confidence            3344555555532    2233344455555555555555555555555555556665554 4445555444443 55555


Q ss_pred             eccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcc
Q 039007          117 LRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLIS  196 (360)
Q Consensus       117 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  196 (360)
                      +++| ..+.+|..++....|.+|+.+.|.+...+..++++.+|+.|.+..| ....+|+.+. .-.|..||++.| .+..
T Consensus       150 ~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~El~-~LpLi~lDfScN-kis~  225 (722)
T KOG0532|consen  150 VSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEELC-SLPLIRLDFSCN-KISY  225 (722)
T ss_pred             EecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHHHh-CCceeeeecccC-ceee
Confidence            5543 4445555555555555555555555555555555555555555553 3344444444 334455555444 3444


Q ss_pred             cCcccCCCCCCCEEeecCCc
Q 039007          197 LPSAVKCLSSSETLILIDCK  216 (360)
Q Consensus       197 ~~~~~~~~~~L~~L~l~~~~  216 (360)
                      +|..+.+|..|++|-+.+++
T Consensus       226 iPv~fr~m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  226 LPVDFRKMRHLQVLQLENNP  245 (722)
T ss_pred             cchhhhhhhhheeeeeccCC
Confidence            55555555555555555544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.86  E-value=7.4e-11  Score=106.37  Aligned_cols=167  Identities=22%  Similarity=0.293  Sum_probs=109.7

Q ss_pred             EEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccc
Q 039007           16 LSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSR   95 (360)
Q Consensus        16 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~   95 (360)
                      .++..|.+..  ++..+..|..|..+.+..|.+    ..++..+.++..|.+|+++.|++..+|..+..|+ |+.|-+++
T Consensus        80 aDlsrNR~~e--lp~~~~~f~~Le~liLy~n~~----r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN  152 (722)
T KOG0532|consen   80 ADLSRNRFSE--LPEEACAFVSLESLILYHNCI----RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN  152 (722)
T ss_pred             hhcccccccc--CchHHHHHHHHHHHHHHhccc----eecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence            3444444433  444556666677777776663    2445556667777777777777777777776666 77777765


Q ss_pred             cccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHh
Q 039007           96 YCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFE  175 (360)
Q Consensus        96 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  175 (360)
                      | +++.+|..++....|..|+.+.| .+..+|..++.+.+|+.|.+..|++...|..+..++ |..||++.| .+..+|-
T Consensus       153 N-kl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScN-kis~iPv  228 (722)
T KOG0532|consen  153 N-KLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCN-KISYLPV  228 (722)
T ss_pred             C-ccccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccC-ceeecch
Confidence            4 66677766776677777777765 455666667777777777777777777666666443 677777754 5566677


Q ss_pred             hhcCCCCccEEEeccCCC
Q 039007          176 HIGQLSGLRSLILVDCPS  193 (360)
Q Consensus       176 ~l~~l~~L~~L~l~~~~~  193 (360)
                      .+..|++|++|-|.+|+.
T Consensus       229 ~fr~m~~Lq~l~LenNPL  246 (722)
T KOG0532|consen  229 DFRKMRHLQVLQLENNPL  246 (722)
T ss_pred             hhhhhhhheeeeeccCCC
Confidence            777777777777777643

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.85  E-value=2.9e-09  Score=97.75  Aligned_cols=200  Identities=29%  Similarity=0.321  Sum_probs=141.8

Q ss_pred             EEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCC-CcCeEeccccccccccchhhhcCCccceEeec
Q 039007           40 TILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLK-HMRYLDLSRYCQIKKLPNSICELQSLQTLILR  118 (360)
Q Consensus        40 ~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  118 (360)
                      .+.+..+...   ... ......+.++.|++.++.++.++.....+. +|+.|+++++ .+..+|..+..+++|+.|+++
T Consensus        97 ~l~~~~~~~~---~~~-~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~  171 (394)
T COG4886          97 SLDLNLNRLR---SNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLS  171 (394)
T ss_pred             eeeccccccc---cCc-hhhhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccC
Confidence            5666666541   111 224455778888888888888887777774 8999999876 666776667888999999998


Q ss_pred             cccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccC
Q 039007          119 GCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLP  198 (360)
Q Consensus       119 ~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  198 (360)
                      .| .+..+|...+..++|+.|++++|.+..++........|+++.+..|. ....+..++.+.++..+.+..++. ..++
T Consensus       172 ~N-~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~-~~~~  248 (394)
T COG4886         172 FN-DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKL-EDLP  248 (394)
T ss_pred             Cc-hhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCcee-eecc
Confidence            86 45566666668888889999999888887666666778888888864 333445566777787777766633 3336


Q ss_pred             cccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhh
Q 039007          199 SAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWL  260 (360)
Q Consensus       199 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~  260 (360)
                      ..++.++.+++|++.++......             ......+++.|+++++......+...
T Consensus       249 ~~~~~l~~l~~L~~s~n~i~~i~-------------~~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         249 ESIGNLSNLETLDLSNNQISSIS-------------SLGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             chhccccccceeccccccccccc-------------cccccCccCEEeccCccccccchhhh
Confidence            67778888999988887654322             25566788888988887665554433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.84  E-value=2.1e-09  Score=98.64  Aligned_cols=181  Identities=30%  Similarity=0.367  Sum_probs=134.6

Q ss_pred             hhhccCccccEEEEeccCCCCcccchHHHhhcCC-CccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhc
Q 039007           30 SLLSDLRRVRTILFSINDENTSESFFTSCISKSQ-FLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICE  108 (360)
Q Consensus        30 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  108 (360)
                      ..+...+.+..|.+.++.+.    .++....... +|++|+++.+.+..+|..+..+++|+.|++++| .+..+|...+.
T Consensus       110 ~~~~~~~~l~~L~l~~n~i~----~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~  184 (394)
T COG4886         110 SELLELTNLTSLDLDNNNIT----DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSN  184 (394)
T ss_pred             hhhhcccceeEEecCCcccc----cCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhh
Confidence            34555678889999988753    2233344443 789999999998888777888999999999987 67777776668


Q ss_pred             CCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEe
Q 039007          109 LQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLIL  188 (360)
Q Consensus       109 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  188 (360)
                      .++|+.|++++| .+..+|..+.....|+.+.+++|.....+..+..+.++..+.+..+. ...++..++.++.++.|++
T Consensus       185 ~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~l~~l~~L~~  262 (394)
T COG4886         185 LSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPESIGNLSNLETLDL  262 (394)
T ss_pred             hhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccchhccccccceecc
Confidence            889999999986 56677776667777899999888655555677788888888866653 3333566778888999999


Q ss_pred             ccCCCCcccCcccCCCCCCCEEeecCCcCcc
Q 039007          189 VDCPSLISLPSAVKCLSSSETLILIDCKSLN  219 (360)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  219 (360)
                      ++|.. ..++. ++...+++.++++++....
T Consensus       263 s~n~i-~~i~~-~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         263 SNNQI-SSISS-LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             ccccc-ccccc-ccccCccCEEeccCccccc
Confidence            88743 34444 7778889999998876544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.71  E-value=5.9e-09  Score=87.30  Aligned_cols=229  Identities=15%  Similarity=0.079  Sum_probs=130.5

Q ss_pred             chHHHhhcCCCccEEEEeCCC--Cc-------ccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcC
Q 039007           54 FFTSCISKSQFLRVLDLDDST--IE-------VLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLE  124 (360)
Q Consensus        54 ~~~~~~~~l~~L~~L~l~~~~--~~-------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  124 (360)
                      .+...+.-|..|.+|.++...  +.       .+|-.+.-+.+|+.+.++.|. ...+......=|.|+.+.+... -+.
T Consensus       173 d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s-~~~  250 (490)
T KOG1259|consen  173 DFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNT-TIQ  250 (490)
T ss_pred             chHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc-hhheeceeecCchhheeeeecc-ccc
Confidence            344556667777777777653  21       233344556778888888762 2222221223356777777653 232


Q ss_pred             cCCccccccccccEEEEec-ccccc-ccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccC
Q 039007          125 ELPKDIRYLVSLRMFVVTT-KQKSL-QESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVK  202 (360)
Q Consensus       125 ~~p~~~~~l~~L~~L~l~~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  202 (360)
                      ..|. +--...+....... ....+ ......-+..|+++++++| .++.+.+.+.-.|+++.|+++.|+....  ..+.
T Consensus       251 ~~~~-l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa  326 (490)
T KOG1259|consen  251 DVPS-LLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTV--QNLA  326 (490)
T ss_pred             cccc-ccchhhhcCccCCCCCccCCceEEecchHhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeee--hhhh
Confidence            2221 11111111111100 00111 1123334567788888886 4555666666778888888888754332  2366


Q ss_pred             CCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcc-c
Q 039007          203 CLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFM-A  281 (360)
Q Consensus       203 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~  281 (360)
                      .+++|+.|+++++......++.            ..+.++++|.|++|. +.++.. +  +.+-+|.+|++++|+.-. +
T Consensus       327 ~L~~L~~LDLS~N~Ls~~~Gwh------------~KLGNIKtL~La~N~-iE~LSG-L--~KLYSLvnLDl~~N~Ie~ld  390 (490)
T KOG1259|consen  327 ELPQLQLLDLSGNLLAECVGWH------------LKLGNIKTLKLAQNK-IETLSG-L--RKLYSLVNLDLSSNQIEELD  390 (490)
T ss_pred             hcccceEeecccchhHhhhhhH------------hhhcCEeeeehhhhh-Hhhhhh-h--HhhhhheeccccccchhhHH
Confidence            6788888888887654433321            344578888888875 323322 2  456778999999884322 3


Q ss_pred             ccccccCcccccccccccccccc
Q 039007          282 LQGSLKDLEALETLLISACRKLS  304 (360)
Q Consensus       282 ~~~~~~~l~~L~~L~l~~~~~~~  304 (360)
                      -...++++|.|+++.+.+|++..
T Consensus       391 eV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  391 EVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             HhcccccccHHHHHhhcCCCccc
Confidence            34457889999999999988543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.69  E-value=2.5e-09  Score=89.50  Aligned_cols=128  Identities=20%  Similarity=0.143  Sum_probs=74.0

Q ss_pred             CCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeecc
Q 039007           86 KHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIIS  165 (360)
Q Consensus        86 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~  165 (360)
                      ..|.++++++| .+..+.+++.-.|.++.|+++.|.+. .+ ..+..+++|++|++++|.......+-..+-+++.|.+.
T Consensus       284 q~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  284 QELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhhcccccc-chhhhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence            44667777766 45555565666677777777765333 22 23566677777777777666554444455566667666


Q ss_pred             CCCchhhhHhhhcCCCCccEEEeccCCCCc-ccCcccCCCCCCCEEeecCCcCc
Q 039007          166 HCWNLEYLFEHIGQLSGLRSLILVDCPSLI-SLPSAVKCLSSSETLILIDCKSL  218 (360)
Q Consensus       166 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~  218 (360)
                      .|. ++.+ ..++++=.|..|++++|..-. +-...++++|.|+.+.+.+++..
T Consensus       361 ~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  361 QNK-IETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhh-Hhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            652 2222 234455566666776664321 11234566777777777766543

>PLN03150 hypothetical protein; Provisional

Probab=98.65  E-value=5.8e-08  Score=93.74  Aligned_cols=104  Identities=22%  Similarity=0.300  Sum_probs=76.3

Q ss_pred             ccEEEEeCCCCc-ccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEec
Q 039007           65 LRVLDLDDSTIE-VLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTT  143 (360)
Q Consensus        65 L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  143 (360)
                      +..|+++++.+. .+|..+..+++|+.|++++|...+.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            667788887776 6777788888888888887766567777778888888888888777777887788888888888888


Q ss_pred             ccccc-ccccCCC-CCCCcEeeccCCC
Q 039007          144 KQKSL-QESGIAC-LSSLRSLIISHCW  168 (360)
Q Consensus       144 ~~~~~-~~~~~~~-l~~L~~L~l~~~~  168 (360)
                      |.+.. .|..+.. ..++..+++.+|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            77653 3444443 2355667777664

>PLN03150 hypothetical protein; Provisional

Probab=98.61  E-value=9.2e-08  Score=92.35  Aligned_cols=107  Identities=22%  Similarity=0.307  Sum_probs=89.2

Q ss_pred             cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCc-ccCcCCCCCCCcCeEeccccccccccchhhhcCCccceE
Q 039007           37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIE-VLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTL  115 (360)
Q Consensus        37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  115 (360)
                      .++.|+|+++.+   ...++..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|...+.+|..++++++|+.|
T Consensus       419 ~v~~L~L~~n~L---~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L  495 (623)
T PLN03150        419 FIDGLGLDNQGL---RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL  495 (623)
T ss_pred             EEEEEECCCCCc---cccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence            478889998886   5566677889999999999999987 788889999999999999987777889889999999999


Q ss_pred             eeccccCcCcCCcccccc-ccccEEEEecccc
Q 039007          116 ILRGCLKLEELPKDIRYL-VSLRMFVVTTKQK  146 (360)
Q Consensus       116 ~l~~~~~~~~~p~~~~~l-~~L~~L~l~~~~~  146 (360)
                      ++++|.+.+.+|..++.. .++..+++.+|..
T Consensus       496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             ECcCCcccccCChHHhhccccCceEEecCCcc
Confidence            999988888899877653 4667788777753

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.47  E-value=1.1e-07  Score=61.99  Aligned_cols=59  Identities=24%  Similarity=0.340  Sum_probs=42.3

Q ss_pred             CCCcEEecccCCCccccc-ccccCccccccccccccccccCCCccccCCCccceecccCCh
Q 039007          266 KTLQFLGIEDCPNFMALQ-GSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECP  325 (360)
Q Consensus       266 ~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~  325 (360)
                      |+|++|++++| .++.+| ..|.++++|++|++++|.+..--+..+..+++|++|++++|+
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            56778888877 555554 467778888888888777654445667778888888887774

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.40  E-value=2.9e-07  Score=60.05  Aligned_cols=58  Identities=28%  Similarity=0.422  Sum_probs=41.1

Q ss_pred             ccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC-cCCCCCCCcCeEecccc
Q 039007           36 RRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-REIGNLKHMRYLDLSRY   96 (360)
Q Consensus        36 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~   96 (360)
                      |+|++|++++|.+   ....+..|.++++|++|++++|.+..++ ..|..+++|++|++++|
T Consensus         1 p~L~~L~l~~n~l---~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKL---TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTE---SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCC---CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            4677777777766   3444456777788888888877777554 45777888888888776

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.31  E-value=1.5e-07  Score=86.87  Aligned_cols=126  Identities=26%  Similarity=0.333  Sum_probs=69.9

Q ss_pred             cCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccc
Q 039007           34 DLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQ  113 (360)
Q Consensus        34 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  113 (360)
                      .+..+..+.+..|.+..    ....+..+++|..|++.+|.+..+...+..+++|++|++++| .++.+.. +..++.|+
T Consensus        70 ~l~~l~~l~l~~n~i~~----~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~  143 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK----ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLK  143 (414)
T ss_pred             HhHhHHhhccchhhhhh----hhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc-hhhccchh
Confidence            45555555555555421    122255566666666766666655444566666677776665 4444433 45556666


Q ss_pred             eEeeccccCcCcCCccccccccccEEEEecccccccccc-CCCCCCCcEeeccCC
Q 039007          114 TLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESG-IACLSSLRSLIISHC  167 (360)
Q Consensus       114 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~  167 (360)
                      .|++.+|. +..+ ..+..++.|+.+++++|.+...... ...+.+++.+++.+|
T Consensus       144 ~L~l~~N~-i~~~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  144 ELNLSGNL-ISDI-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGN  196 (414)
T ss_pred             hheeccCc-chhc-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence            66666653 3233 2344466666666666666555221 355566666666655

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.28  E-value=3.6e-07  Score=75.73  Aligned_cols=243  Identities=16%  Similarity=0.064  Sum_probs=136.5

Q ss_pred             hhhccCccccEEEEeccCCC-CcccchHHHhhcCCCccEEEEeCCCCc----cc-------CcCCCCCCCcCeEeccccc
Q 039007           30 SLLSDLRRVRTILFSINDEN-TSESFFTSCISKSQFLRVLDLDDSTIE----VL-------PREIGNLKHMRYLDLSRYC   97 (360)
Q Consensus        30 ~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~----~~-------~~~~~~l~~L~~L~l~~~~   97 (360)
                      ..+.-+..+..+++++|.++ ....++...+.+-.+|++..+++--..    .+       .+.+-+||+|+..+++.|.
T Consensus        24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA  103 (388)
T COG5238          24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA  103 (388)
T ss_pred             HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence            34555778889999999875 223345566666677888777764211    22       2345678889999888886


Q ss_pred             cccccch----hhhcCCccceEeeccccCcCcCCc--------------cccccccccEEEEeccccccccc-----cCC
Q 039007           98 QIKKLPN----SICELQSLQTLILRGCLKLEELPK--------------DIRYLVSLRMFVVTTKQKSLQES-----GIA  154 (360)
Q Consensus        98 ~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~p~--------------~~~~l~~L~~L~l~~~~~~~~~~-----~~~  154 (360)
                      +..+.|+    .++.-+.|++|.+++|. .+.+..              .+..-+.|+...+..|++...+.     .+.
T Consensus       104 fg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~  182 (388)
T COG5238         104 FGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLE  182 (388)
T ss_pred             cCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHH
Confidence            6555553    34567888888888763 322211              12233567777777776654421     222


Q ss_pred             CCCCCcEeeccCCCchhh-----hHhhhcCCCCccEEEeccCCCCc----ccCcccCCCCCCCEEeecCCcCcccccccc
Q 039007          155 CLSSLRSLIISHCWNLEY-----LFEHIGQLSGLRSLILVDCPSLI----SLPSAVKCLSSSETLILIDCKSLNLNLNIE  225 (360)
Q Consensus       155 ~l~~L~~L~l~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  225 (360)
                      .-.+|+.+.+..|..-..     ....+..+.+|+.|++..|.+..    .+...++.++.|+.|.+.+|-...      
T Consensus       183 sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~------  256 (388)
T COG5238         183 SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN------  256 (388)
T ss_pred             hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc------
Confidence            234666666666532211     12334456777777777664322    122334455556666666552111      


Q ss_pred             ccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccc------ccc-ccCcccccccccc
Q 039007          226 MEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMAL------QGS-LKDLEALETLLIS  298 (360)
Q Consensus       226 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~------~~~-~~~l~~L~~L~l~  298 (360)
                                               .....+...+.....|+|..|....|..-..+      +.. -..+|-|..|.+.
T Consensus       257 -------------------------~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~n  311 (388)
T COG5238         257 -------------------------EGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERN  311 (388)
T ss_pred             -------------------------ccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHc
Confidence                                     11112222222235677777777766443321      111 1457788888888


Q ss_pred             cccccc
Q 039007          299 ACRKLS  304 (360)
Q Consensus       299 ~~~~~~  304 (360)
                      +|++..
T Consensus       312 gNr~~E  317 (388)
T COG5238         312 GNRIKE  317 (388)
T ss_pred             cCcchh
Confidence            887543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.23  E-value=2.5e-07  Score=87.35  Aligned_cols=228  Identities=24%  Similarity=0.274  Sum_probs=109.4

Q ss_pred             CCCCcCeEeccccccccc--cchhhhcCCccceEeeccc-cCcCcCC----ccccccccccEEEEeccc-cccc--cccC
Q 039007           84 NLKHMRYLDLSRYCQIKK--LPNSICELQSLQTLILRGC-LKLEELP----KDIRYLVSLRMFVVTTKQ-KSLQ--ESGI  153 (360)
Q Consensus        84 ~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~~p----~~~~~l~~L~~L~l~~~~-~~~~--~~~~  153 (360)
                      .++.|+.|.+..|..+..  +......+++|+.|+++++ ......+    .....+++|+.++++++. ++..  ....
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            356677777666655544  2233456677777777652 1111111    122344666666666655 2221  1112


Q ss_pred             CCCCCCcEeeccCCCchh--hhHhhhcCCCCccEEEeccCCCCcc--cCcccCCCCCCCEEeecCCcCccccccccccCC
Q 039007          154 ACLSSLRSLIISHCWNLE--YLFEHIGQLSGLRSLILVDCPSLIS--LPSAVKCLSSSETLILIDCKSLNLNLNIEMEGE  229 (360)
Q Consensus       154 ~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  229 (360)
                      ..|++|+.|.+..|..++  .+......++.|++|++++|...+.  +......|++++.+.+..+..            
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~------------  333 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG------------  333 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC------------
Confidence            236667777666555322  3344445566677777776655421  233334455555544433321            


Q ss_pred             CCCCCCCCCCCccceEEecCccCCC-CchhhhhcCCCCCCcEEecccCCCcccc--cccccCccc--------------c
Q 039007          230 GSHHDRDNTRTHLQKLFVSGLKQLL-DLPQWLLQGSTKTLQFLGIEDCPNFMAL--QGSLKDLEA--------------L  292 (360)
Q Consensus       230 ~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~l~~--------------L  292 (360)
                               +..++.+.+.++.... +.........+++++.+.+..|. ....  ...+.+|+.              +
T Consensus       334 ---------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l  403 (482)
T KOG1947|consen  334 ---------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESLELRLCRSDSL  403 (482)
T ss_pred             ---------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHHHHHhccCCcc
Confidence                     2233333333322221 11111112445555555555544 2211  123334443              5


Q ss_pred             ccccccccccccCCC-cccc-CCCccceecccCChhHHhhcCC
Q 039007          293 ETLLISACRKLSSLP-EDIH-HLTTLKTLSIKECPALWERCKP  333 (360)
Q Consensus       293 ~~L~l~~~~~~~~~~-~~~~-~~~~L~~L~l~~c~~~~~~~~~  333 (360)
                      +.|++..|...+.-. .... .+..++.+.+.+|+.+......
T Consensus       404 ~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~  446 (482)
T KOG1947|consen  404 RVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLE  446 (482)
T ss_pred             ceEecccCccccccchHHHhhhhhccccCCccCcccccchhhh
Confidence            677777766554311 1111 1667788888888777765443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.23  E-value=1.3e-07  Score=87.26  Aligned_cols=129  Identities=26%  Similarity=0.277  Sum_probs=96.5

Q ss_pred             hcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEE
Q 039007           60 SKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMF  139 (360)
Q Consensus        60 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L  139 (360)
                      ..+..++.+.++.+.+..+-..+..+.+|..|++.++ .+..+...+..+++|++|++++| .+..+. .+..++.|+.|
T Consensus        69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L  145 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKEL  145 (414)
T ss_pred             HHhHhHHhhccchhhhhhhhcccccccceeeeecccc-chhhcccchhhhhcchheecccc-cccccc-chhhccchhhh
Confidence            4566677777888877765555788899999999977 55555554778999999999987 454442 56777889999


Q ss_pred             EEeccccccccccCCCCCCCcEeeccCCCchhhhHhh-hcCCCCccEEEeccCCC
Q 039007          140 VVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEH-IGQLSGLRSLILVDCPS  193 (360)
Q Consensus       140 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~  193 (360)
                      ++.+|.+..+ ..+..+++|+.+++.+|.... +... +..+.+++.+.+.+|..
T Consensus       146 ~l~~N~i~~~-~~~~~l~~L~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  146 NLSGNLISDI-SGLESLKSLKLLDLSYNRIVD-IENDELSELISLEELDLGGNSI  198 (414)
T ss_pred             eeccCcchhc-cCCccchhhhcccCCcchhhh-hhhhhhhhccchHHHhccCCch
Confidence            9999988877 456668899999999875433 2221 46788899999988754

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.23  E-value=7.6e-07  Score=86.10  Aligned_cols=80  Identities=21%  Similarity=0.268  Sum_probs=36.4

Q ss_pred             cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCc--ccCcCCCCCCCcCeEeccccccccccchhhhcCCccce
Q 039007           37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIE--VLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQT  114 (360)
Q Consensus        37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  114 (360)
                      +|+.|+++|.. ....+|+.+.-..+|.|+.|.+++-.+.  +......++|+|..||++++ .++.+ .+++++++||.
T Consensus       123 nL~~LdI~G~~-~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  123 NLQHLDISGSE-LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV  199 (699)
T ss_pred             hhhhcCccccc-hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence            45555555443 1234444444444555555555544432  22223344455555555543 33333 33455555555


Q ss_pred             Eeecc
Q 039007          115 LILRG  119 (360)
Q Consensus       115 L~l~~  119 (360)
                      |.+.+
T Consensus       200 L~mrn  204 (699)
T KOG3665|consen  200 LSMRN  204 (699)
T ss_pred             HhccC
Confidence            55543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.20  E-value=1.6e-06  Score=72.94  Aligned_cols=88  Identities=17%  Similarity=0.136  Sum_probs=49.3

Q ss_pred             HHhhcCCCccEEEEeCCCCc---ccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcC-cCCccccc
Q 039007           57 SCISKSQFLRVLDLDDSTIE---VLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLE-ELPKDIRY  132 (360)
Q Consensus        57 ~~~~~l~~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~p~~~~~  132 (360)
                      ..-..++.++++++.+|.++   ++...+.++|+|++|+++.|+....+...-....+|+.|-+.+..... .....+..
T Consensus        65 ~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~  144 (418)
T KOG2982|consen   65 LFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDD  144 (418)
T ss_pred             HHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhc
Confidence            33445667777777777765   344445677777777777654332221111244567777776643322 12233456


Q ss_pred             cccccEEEEecc
Q 039007          133 LVSLRMFVVTTK  144 (360)
Q Consensus       133 l~~L~~L~l~~~  144 (360)
                      +++++.|+++.|
T Consensus       145 lP~vtelHmS~N  156 (418)
T KOG2982|consen  145 LPKVTELHMSDN  156 (418)
T ss_pred             chhhhhhhhccc
Confidence            667777777666

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.10  E-value=1.2e-07  Score=88.59  Aligned_cols=20  Identities=15%  Similarity=0.114  Sum_probs=13.7

Q ss_pred             hhhccCccccEEEEeccCCC
Q 039007           30 SLLSDLRRVRTILFSINDEN   49 (360)
Q Consensus        30 ~~~~~~~~L~~L~l~~~~~~   49 (360)
                      -.+..++.||+|.+.++++.
T Consensus       103 i~ifpF~sLr~LElrg~~L~  122 (1096)
T KOG1859|consen  103 ISIFPFRSLRVLELRGCDLS  122 (1096)
T ss_pred             ceeccccceeeEEecCcchh
Confidence            34556777888888777753

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.09  E-value=2.4e-05  Score=70.17  Aligned_cols=32  Identities=25%  Similarity=0.514  Sum_probs=16.8

Q ss_pred             CCCcEEecccCCCcccccccccCcccccccccccc
Q 039007          266 KTLQFLGIEDCPNFMALQGSLKDLEALETLLISAC  300 (360)
Q Consensus       266 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~  300 (360)
                      ++|++|++.+|..+. +|..+.  .+|+.|+++.+
T Consensus       156 sSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCccc-Cccccc--ccCcEEEeccc
Confidence            566677776665332 232222  35666666554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.04  E-value=3.8e-06  Score=81.38  Aligned_cols=132  Identities=19%  Similarity=0.253  Sum_probs=91.6

Q ss_pred             CcceEEEeeeccccccchh-hhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcC
Q 039007           11 KRVRHLSFVSASASRNDFS-SLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMR   89 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~   89 (360)
                      .+++.|++.+...-...+. ..-.-+|.|++|.+++-.+.  .+.+...+.++++|..||+++++++.+ ..++++++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~--~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD--NDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec--chhHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence            3467777776543332333 33447899999999987654  444677788999999999999999877 6788999999


Q ss_pred             eEecccccccccc--chhhhcCCccceEeeccccCcCcCCccc-------cccccccEEEEeccccc
Q 039007           90 YLDLSRYCQIKKL--PNSICELQSLQTLILRGCLKLEELPKDI-------RYLVSLRMFVVTTKQKS  147 (360)
Q Consensus        90 ~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~p~~~-------~~l~~L~~L~l~~~~~~  147 (360)
                      .|.+.+= .....  -..+.++++|+.||++...... .+..+       ..+|+|+.|+++++...
T Consensus       199 ~L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  199 VLSMRNL-EFESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HHhccCC-CCCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcchh
Confidence            9988743 33221  2346789999999998753332 22111       24678888888877654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.02  E-value=8.6e-07  Score=83.63  Aligned_cols=43  Identities=26%  Similarity=0.412  Sum_probs=28.4

Q ss_pred             CCCCCCcEEecccCCCccc-ccccccC-ccccccccccccccccC
Q 039007          263 GSTKTLQFLGIEDCPNFMA-LQGSLKD-LEALETLLISACRKLSS  305 (360)
Q Consensus       263 ~~~~~L~~L~L~~~~~~~~-~~~~~~~-l~~L~~L~l~~~~~~~~  305 (360)
                      ..+..++.|.+..|...+. ....... +..++.+++.+++....
T Consensus       398 ~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~  442 (482)
T KOG1947|consen  398 CRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITL  442 (482)
T ss_pred             ccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccc
Confidence            3344489999999876662 2222222 77889999999886653

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.02  E-value=3.8e-05  Score=68.97  Aligned_cols=61  Identities=25%  Similarity=0.403  Sum_probs=26.6

Q ss_pred             CCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCC
Q 039007           62 SQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELP  127 (360)
Q Consensus        62 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p  127 (360)
                      |.+++.|++++|.++.+|.   -..+|+.|.+++|..+..+|..+  .++|+.|.+++|..+..+|
T Consensus        51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP  111 (426)
T PRK15386         51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP  111 (426)
T ss_pred             hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence            4445555555554444441   11235555555444444444322  2345555555443333333

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.98  E-value=1.4e-06  Score=73.17  Aligned_cols=84  Identities=18%  Similarity=0.191  Sum_probs=44.0

Q ss_pred             cCCccceEeeccccCcC--cCCccccccccccEEEEeccccccccccC-CCCCCCcEeeccCCCc-hhhhHhhhcCCCCc
Q 039007          108 ELQSLQTLILRGCLKLE--ELPKDIRYLVSLRMFVVTTKQKSLQESGI-ACLSSLRSLIISHCWN-LEYLFEHIGQLSGL  183 (360)
Q Consensus       108 ~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~l~~~~~-~~~~~~~l~~l~~L  183 (360)
                      .++.++++++.+|.+..  .+...+.++|.|+.|+++.|........+ ....+|+.|-+.+... .+..-..+..+|++
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            46677777777764332  23334556677777777776665543333 2445666665554321 11222233445555


Q ss_pred             cEEEeccC
Q 039007          184 RSLILVDC  191 (360)
Q Consensus       184 ~~L~l~~~  191 (360)
                      ++|.++.|
T Consensus       149 telHmS~N  156 (418)
T KOG2982|consen  149 TELHMSDN  156 (418)
T ss_pred             hhhhhccc
Confidence            55555554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.95  E-value=1.4e-07  Score=88.06  Aligned_cols=44  Identities=23%  Similarity=0.109  Sum_probs=21.8

Q ss_pred             hhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCC
Q 039007          170 LEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDC  215 (360)
Q Consensus       170 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  215 (360)
                      +..+-..+.-++.++.|+++.|.....  +.+..|+.|++|++++|
T Consensus       176 L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN  219 (1096)
T KOG1859|consen  176 LVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYN  219 (1096)
T ss_pred             HHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccc
Confidence            333444455555666666666543221  13444555555555554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.89  E-value=1.3e-05  Score=47.92  Aligned_cols=33  Identities=39%  Similarity=0.558  Sum_probs=18.2

Q ss_pred             CccEEEEeCCCCcccCcCCCCCCCcCeEecccc
Q 039007           64 FLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRY   96 (360)
Q Consensus        64 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~   96 (360)
                      +|++|++++|.++.+|+.+++|++|++|++++|
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence            455666666665555555556666666666655

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.64  E-value=4e-05  Score=45.86  Aligned_cols=36  Identities=31%  Similarity=0.341  Sum_probs=22.0

Q ss_pred             CCCcEEecccCCCcccccccccCcccccccccccccc
Q 039007          266 KTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRK  302 (360)
Q Consensus       266 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  302 (360)
                      ++|++|++++| .++++|..++++++|+.|++++|++
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred             CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCC
Confidence            35666777666 4555665566677777777777653

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.59  E-value=0.00013  Score=60.96  Aligned_cols=204  Identities=16%  Similarity=0.170  Sum_probs=133.9

Q ss_pred             CcceEEEeeecccccc---chhhhhccCccccEEEEeccCCCCccc-------chHHHhhcCCCccEEEEeCCCCc-ccC
Q 039007           11 KRVRHLSFVSASASRN---DFSSLLSDLRRVRTILFSINDENTSES-------FFTSCISKSQFLRVLDLDDSTIE-VLP   79 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~-------~~~~~~~~l~~L~~L~l~~~~~~-~~~   79 (360)
                      ..++.+++++|.+...   -+...++.-++|++.+++.--.+...+       .+.+.+-+||+|+..++++|-+. ..|
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            4577889999988762   233445566888888888543221111       24456778999999999999876 444


Q ss_pred             c----CCCCCCCcCeEeccccccccccc-hhhh-------------cCCccceEeeccccCcCcCCc-----cccccccc
Q 039007           80 R----EIGNLKHMRYLDLSRYCQIKKLP-NSIC-------------ELQSLQTLILRGCLKLEELPK-----DIRYLVSL  136 (360)
Q Consensus        80 ~----~~~~l~~L~~L~l~~~~~~~~~~-~~~~-------------~l~~L~~L~l~~~~~~~~~p~-----~~~~l~~L  136 (360)
                      +    .+++-..|..|.+++|. .+.+. ..++             .-|.|+....++|. ....+.     .+..-..|
T Consensus       110 e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~sh~~l  187 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLESHENL  187 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHHhhcCc
Confidence            4    35677889999999874 33221 1122             35889999998874 333332     12233578


Q ss_pred             cEEEEeccccccc------cccCCCCCCCcEeeccCCCchh----hhHhhhcCCCCccEEEeccCCCCcc----cCcccC
Q 039007          137 RMFVVTTKQKSLQ------ESGIACLSSLRSLIISHCWNLE----YLFEHIGQLSGLRSLILVDCPSLIS----LPSAVK  202 (360)
Q Consensus       137 ~~L~l~~~~~~~~------~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~  202 (360)
                      +.+.+..|.+..-      ...+..+.+|+.|++.+|....    .+...+...+.|++|.+..|-....    +...+.
T Consensus       188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~  267 (388)
T COG5238         188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN  267 (388)
T ss_pred             eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence            8899998877532      2456788999999999986543    4556667788899999988853321    111111


Q ss_pred             --CCCCCCEEeecCCc
Q 039007          203 --CLSSSETLILIDCK  216 (360)
Q Consensus       203 --~~~~L~~L~l~~~~  216 (360)
                        ..|+|+.|...++.
T Consensus       268 e~~~p~l~~L~~~Yne  283 (388)
T COG5238         268 EKFVPNLMPLPGDYNE  283 (388)
T ss_pred             hhcCCCccccccchhh
Confidence              24777888777654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.31  E-value=1.8e-05  Score=66.09  Aligned_cols=100  Identities=25%  Similarity=0.237  Sum_probs=72.5

Q ss_pred             cCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccch--hhhcCCc
Q 039007           34 DLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPN--SICELQS  111 (360)
Q Consensus        34 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~  111 (360)
                      .+.+++.|+++|+.+.   +.  .....++.|++|.|+-|.++++ ..+..|.+|++|.+..| .+..+.+  -+.++++
T Consensus        17 dl~~vkKLNcwg~~L~---DI--sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlps   89 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLD---DI--SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPS   89 (388)
T ss_pred             HHHHhhhhcccCCCcc---HH--HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCch
Confidence            3457788999988862   21  3477889999999999988876 45788999999999877 4444432  3568899


Q ss_pred             cceEeeccccCcCcCCc-----cccccccccEEE
Q 039007          112 LQTLILRGCLKLEELPK-----DIRYLVSLRMFV  140 (360)
Q Consensus       112 L~~L~l~~~~~~~~~p~-----~~~~l~~L~~L~  140 (360)
                      |+.|.|..|...+.-+.     .+..+++|+.|+
T Consensus        90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            99999988876665543     245667777665

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.26  E-value=3.3e-05  Score=57.64  Aligned_cols=109  Identities=18%  Similarity=0.207  Sum_probs=59.1

Q ss_pred             ccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCC-CCCCcCeEeccccccccccchhhhcCCccceEe
Q 039007           38 VRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIG-NLKHMRYLDLSRYCQIKKLPNSICELQSLQTLI  116 (360)
Q Consensus        38 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  116 (360)
                      +..++++.|.+.. .......+....+|...++++|.+...|+.+. +++.++.|++.+| .+.++|..+..++.|+.|+
T Consensus        29 ~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcc
Confidence            4455555554310 11122234444555555666666666665543 3456666666654 5566666666666666666


Q ss_pred             eccccCcCcCCccccccccccEEEEeccccccc
Q 039007          117 LRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQ  149 (360)
Q Consensus       117 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~  149 (360)
                      ++.|.+. ..|+.+..+.++..|+..++....+
T Consensus       107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ei  138 (177)
T KOG4579|consen  107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARAEI  138 (177)
T ss_pred             cccCccc-cchHHHHHHHhHHHhcCCCCccccC
Confidence            6665333 3455555566666666655555444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.23  E-value=2.1e-05  Score=65.78  Aligned_cols=97  Identities=20%  Similarity=0.207  Sum_probs=76.1

Q ss_pred             cceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC--cCCCCCCCcC
Q 039007           12 RVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP--REIGNLKHMR   89 (360)
Q Consensus        12 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~   89 (360)
                      .++.|++-++++.+   .....+++.|.+|.|+-|.++    ++ ..+..|+.|++|+|+.|.+..+-  ..+.++|+|+
T Consensus        20 ~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIs----sL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKIS----SL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR   91 (388)
T ss_pred             HhhhhcccCCCccH---HHHHHhcccceeEEeeccccc----cc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence            46677777888877   556789999999999999863    22 33889999999999999988542  4578999999


Q ss_pred             eEeccccccccccchh-----hhcCCccceEe
Q 039007           90 YLDLSRYCQIKKLPNS-----ICELQSLQTLI  116 (360)
Q Consensus        90 ~L~l~~~~~~~~~~~~-----~~~l~~L~~L~  116 (360)
                      .|++..|.-.+..+..     +.-+++|+.|+
T Consensus        92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            9999988766655543     34588898886

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.19  E-value=0.00057  Score=54.65  Aligned_cols=102  Identities=22%  Similarity=0.250  Sum_probs=63.5

Q ss_pred             CccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhh-hcCCccceEeeccccCcCcCC--ccccccccccEEE
Q 039007           64 FLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSI-CELQSLQTLILRGCLKLEELP--KDIRYLVSLRMFV  140 (360)
Q Consensus        64 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~p--~~~~~l~~L~~L~  140 (360)
                      ....+++++|.+..+ ..+..++.|.+|.+++| .+..+.+.+ ..+++|+.|.+.+|++. .+-  .-+..+++|+.|.
T Consensus        43 ~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhhc-ccCCCccccceEEecCC-cceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence            345677888776655 35667788888888876 444443334 34677888888876433 221  2355677777777


Q ss_pred             Eecccccccc----ccCCCCCCCcEeeccCCC
Q 039007          141 VTTKQKSLQE----SGIACLSSLRSLIISHCW  168 (360)
Q Consensus       141 l~~~~~~~~~----~~~~~l~~L~~L~l~~~~  168 (360)
                      +-+|....-.    ..+..+++|+.||+....
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            7777654431    345556777777766543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.18  E-value=0.00011  Score=61.11  Aligned_cols=58  Identities=21%  Similarity=0.177  Sum_probs=24.7

Q ss_pred             CCCccEEEEeCCCCcccCcCCCCCCCcCeEecccc--ccccccchhhhcCCccceEeeccc
Q 039007           62 SQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRY--CQIKKLPNSICELQSLQTLILRGC  120 (360)
Q Consensus        62 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~  120 (360)
                      +..|+.|++.+..++++ ..+..+++|++|.++.|  .....++.-..++++|+++.+++|
T Consensus        42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N  101 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN  101 (260)
T ss_pred             ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence            33344444444443332 13334455555555544  222233332334455555555554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.14  E-value=0.00065  Score=54.34  Aligned_cols=103  Identities=19%  Similarity=0.185  Sum_probs=68.4

Q ss_pred             cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCC-CCCCcCeEeccccccccccc--hhhhcCCccc
Q 039007           37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIG-NLKHMRYLDLSRYCQIKKLP--NSICELQSLQ  113 (360)
Q Consensus        37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~  113 (360)
                      ....++++.|++...     ..|.+++.|..|.+..|.++.+.+.+. .+++|+.|.+.+| .+.++.  .-+..|++|+
T Consensus        43 ~~d~iDLtdNdl~~l-----~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~  116 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL-----DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLE  116 (233)
T ss_pred             ccceecccccchhhc-----ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccc
Confidence            455678888775322     236777888888888888886655554 4577888888877 333332  2256788888


Q ss_pred             eEeeccccCcCcC---CccccccccccEEEEeccc
Q 039007          114 TLILRGCLKLEEL---PKDIRYLVSLRMFVVTTKQ  145 (360)
Q Consensus       114 ~L~l~~~~~~~~~---p~~~~~l~~L~~L~l~~~~  145 (360)
                      .|.+-+|.....-   -..+..+++|+.|++..-.
T Consensus       117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             eeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            8888887544321   1246778888888887543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.91  E-value=0.00015  Score=54.19  Aligned_cols=109  Identities=22%  Similarity=0.193  Sum_probs=79.2

Q ss_pred             EEEeeeccccc-cchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEec
Q 039007           15 HLSFVSASASR-NDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDL   93 (360)
Q Consensus        15 ~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l   93 (360)
                      .++|+++++-. .+....+.+..+|...++++|.+   .+..++....++.+..|++.+|.+..+|..+..++.|+.|++
T Consensus        31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f---k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF---KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL  107 (177)
T ss_pred             hcccccchhhHHHHHHHHHhCCceEEEEecccchh---hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence            34555554431 12344566777888999999987   555566666677889999999999999999999999999999


Q ss_pred             cccccccccchhhhcCCccceEeeccccCcCcCCc
Q 039007           94 SRYCQIKKLPNSICELQSLQTLILRGCLKLEELPK  128 (360)
Q Consensus        94 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~  128 (360)
                      +.|. +...|.-+..+.+|-.|+..++ ....+|.
T Consensus       108 ~~N~-l~~~p~vi~~L~~l~~Lds~~n-a~~eid~  140 (177)
T KOG4579|consen  108 RFNP-LNAEPRVIAPLIKLDMLDSPEN-ARAEIDV  140 (177)
T ss_pred             ccCc-cccchHHHHHHHhHHHhcCCCC-ccccCcH
Confidence            9884 4455665667888888888775 4444553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.84  E-value=0.00029  Score=58.57  Aligned_cols=105  Identities=17%  Similarity=0.129  Sum_probs=54.5

Q ss_pred             CCCCcCeEeccccccccccchhhhcCCccceEeeccc--cCcCcCCccccccccccEEEEeccccccc--cccCCCCCCC
Q 039007           84 NLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGC--LKLEELPKDIRYLVSLRMFVVTTKQKSLQ--ESGIACLSSL  159 (360)
Q Consensus        84 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~p~~~~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L  159 (360)
                      .+..|+.|++.++ ..+.+. ++-.+++|+.|.++.|  .....++.-+..+++|+++++++|.+..+  ...+..+.+|
T Consensus        41 ~~~~le~ls~~n~-gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   41 EFVELELLSVINV-GLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             cccchhhhhhhcc-ceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            3445555555543 222221 2445667777777766  33344444445557777777777766543  1234445556


Q ss_pred             cEeeccCCCchh---hhHhhhcCCCCccEEEecc
Q 039007          160 RSLIISHCWNLE---YLFEHIGQLSGLRSLILVD  190 (360)
Q Consensus       160 ~~L~l~~~~~~~---~~~~~l~~l~~L~~L~l~~  190 (360)
                      ..|++..|....   .--..+.-+++|+.|+-..
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            666666653322   2223344456666665443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.55  E-value=0.0072  Score=45.69  Aligned_cols=81  Identities=11%  Similarity=0.249  Sum_probs=30.2

Q ss_pred             hhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CCCCCCCcCeEeccccccccccc-hhhhc
Q 039007           31 LLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EIGNLKHMRYLDLSRYCQIKKLP-NSICE  108 (360)
Q Consensus        31 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~  108 (360)
                      .|.+|.+|+.+.+.. .+   ...-...|.+++.|+.+.+..+ +..++. .+..++.|+.+.+..  ....++ ..+..
T Consensus         7 ~F~~~~~l~~i~~~~-~~---~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~   79 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TI---KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSN   79 (129)
T ss_dssp             TTTT-TT--EEEETS-T-----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT
T ss_pred             HHhCCCCCCEEEECC-Ce---eEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccc
Confidence            455555555555542 11   2222333555555555555543 333322 344454555555542  122222 22334


Q ss_pred             CCccceEeec
Q 039007          109 LQSLQTLILR  118 (360)
Q Consensus       109 l~~L~~L~l~  118 (360)
                      +++|+.+.+.
T Consensus        80 ~~~l~~i~~~   89 (129)
T PF13306_consen   80 CTNLKNIDIP   89 (129)
T ss_dssp             -TTECEEEET
T ss_pred             cccccccccC
Confidence            5555555553

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.21  E-value=0.024  Score=42.80  Aligned_cols=102  Identities=12%  Similarity=0.268  Sum_probs=44.0

Q ss_pred             HhhcCCCccEEEEeCCCCcccCc-CCCCCCCcCeEeccccccccccc-hhhhcCCccceEeeccccCcCcCC-ccccccc
Q 039007           58 CISKSQFLRVLDLDDSTIEVLPR-EIGNLKHMRYLDLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELP-KDIRYLV  134 (360)
Q Consensus        58 ~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~  134 (360)
                      .|.++.+|+.+.+.. .+..++. .+..+.+|+.+.+...  +..++ ..+..+.+|+.+.+..  ....++ ..+..++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-T
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--cccccccccccccc
Confidence            466677777777764 3444433 3666667777777642  44433 3455666677777754  122222 2344566


Q ss_pred             cccEEEEeccccccccccCCCCCCCcEeecc
Q 039007          135 SLRMFVVTTKQKSLQESGIACLSSLRSLIIS  165 (360)
Q Consensus       135 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~  165 (360)
                      +|+.+.+..+-.......+.++ +|+.+.+.
T Consensus        82 ~l~~i~~~~~~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   82 NLKNIDIPSNITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             TECEEEETTT-BEEHTTTTTT--T--EEE-T
T ss_pred             cccccccCccccEEchhhhcCC-CceEEEEC
Confidence            6666666543221222344444 56655554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.53  E-value=0.0032  Score=50.51  Aligned_cols=64  Identities=22%  Similarity=0.217  Sum_probs=38.6

Q ss_pred             CCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCccc-ccccccCccccccccccccc
Q 039007          238 TRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMA-LQGSLKDLEALETLLISACR  301 (360)
Q Consensus       238 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~l~~~~  301 (360)
                      .+..++.|++.+|..+.++....+.+-.++|+.|+|++|..+++ -...+..+++|+.|.+.+-+
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence            34455566666666666665555545667777777777776662 23345666667777666544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.38  E-value=0.0074  Score=29.90  Aligned_cols=18  Identities=28%  Similarity=0.576  Sum_probs=8.5

Q ss_pred             ccEEEEeCCCCcccCcCC
Q 039007           65 LRVLDLDDSTIEVLPREI   82 (360)
Q Consensus        65 L~~L~l~~~~~~~~~~~~   82 (360)
                      |++|++++|.++.+|+.+
T Consensus         2 L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEESEEGTTT
T ss_pred             ccEEECCCCcCEeCChhh
Confidence            445555555444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.51  E-value=0.0058  Score=49.04  Aligned_cols=87  Identities=16%  Similarity=0.259  Sum_probs=60.8

Q ss_pred             ccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCccccc-ccc-cCccccccccccccccccC-CCccccCCCccc
Q 039007          241 HLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQ-GSL-KDLEALETLLISACRKLSS-LPEDIHHLTTLK  317 (360)
Q Consensus       241 ~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~-~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~  317 (360)
                      .++.++-+++....+--..+  ..++.++.|.+.+|..+.++. ..+ .-.++|+.|+|++|+.+++ .-..+..+++|+
T Consensus       102 ~IeaVDAsds~I~~eGle~L--~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHL--RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR  179 (221)
T ss_pred             eEEEEecCCchHHHHHHHHH--hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence            34555555544333333444  688999999999998887442 112 3468999999999998875 334467789999


Q ss_pred             eecccCChhHHh
Q 039007          318 TLSIKECPALWE  329 (360)
Q Consensus       318 ~L~l~~c~~~~~  329 (360)
                      .|.+.+-|.+..
T Consensus       180 ~L~l~~l~~v~~  191 (221)
T KOG3864|consen  180 RLHLYDLPYVAN  191 (221)
T ss_pred             HHHhcCchhhhc
Confidence            999988876553

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.54  E-value=0.056  Score=24.78  Aligned_cols=12  Identities=42%  Similarity=0.764  Sum_probs=4.1

Q ss_pred             ccEEEEeCCCCc
Q 039007           65 LRVLDLDDSTIE   76 (360)
Q Consensus        65 L~~L~l~~~~~~   76 (360)
                      |+.|++++|.++
T Consensus         3 L~~L~l~~n~L~   14 (17)
T PF13504_consen    3 LRTLDLSNNRLT   14 (17)
T ss_dssp             -SEEEETSS--S
T ss_pred             cCEEECCCCCCC
Confidence            444444444443

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=91.65  E-value=0.09  Score=27.15  Aligned_cols=18  Identities=17%  Similarity=0.482  Sum_probs=14.2

Q ss_pred             CCccceecccCChhHHhh
Q 039007          313 LTTLKTLSIKECPALWER  330 (360)
Q Consensus       313 ~~~L~~L~l~~c~~~~~~  330 (360)
                      +++|++|+|++|+.+++.
T Consensus         1 c~~L~~L~l~~C~~itD~   18 (26)
T smart00367        1 CPNLRELDLSGCTNITDE   18 (26)
T ss_pred             CCCCCEeCCCCCCCcCHH
Confidence            578888888888877765

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=90.86  E-value=0.0036  Score=58.43  Aligned_cols=62  Identities=23%  Similarity=0.132  Sum_probs=35.0

Q ss_pred             CCCcEEecccCCCcc----cccccccCccccccccccccccccCCCc----cc-cCCCccceecccCChhHH
Q 039007          266 KTLQFLGIEDCPNFM----ALQGSLKDLEALETLLISACRKLSSLPE----DI-HHLTTLKTLSIKECPALW  328 (360)
Q Consensus       266 ~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~-~~~~~L~~L~l~~c~~~~  328 (360)
                      +.+..+++..+....    .++..+...+.++.++++.|....+.+.    .. .+. .++.++++.++-..
T Consensus       376 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~  446 (478)
T KOG4308|consen  376 SELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPITA  446 (478)
T ss_pred             cccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhhh
Confidence            345556665553332    3444556677888888887765443221    11 233 77778877775433

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=89.98  E-value=0.0038  Score=58.29  Aligned_cols=37  Identities=19%  Similarity=0.256  Sum_probs=17.4

Q ss_pred             ceEEEeeecccccc---chhhhhccCccccEEEEeccCCC
Q 039007           13 VRHLSFVSASASRN---DFSSLLSDLRRVRTILFSINDEN   49 (360)
Q Consensus        13 l~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~   49 (360)
                      +..+++.++.+...   .....+...++|..|++++|.++
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~  128 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG  128 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence            34444444444332   12334445555555555555543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.11  E-value=0.046  Score=45.11  Aligned_cols=92  Identities=21%  Similarity=0.150  Sum_probs=58.7

Q ss_pred             CCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcE
Q 039007           82 IGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRS  161 (360)
Q Consensus        82 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~  161 (360)
                      +......+.||++.+ ....+...++.++.|..|+++.+ .+..+|..++....+++++...|..+..|..++..+.+++
T Consensus        38 i~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK  115 (326)
T ss_pred             hhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence            444556667777665 34444555666777777777764 4556677777777777777766666666667777777777


Q ss_pred             eeccCCCchhhhHh
Q 039007          162 LIISHCWNLEYLFE  175 (360)
Q Consensus       162 L~l~~~~~~~~~~~  175 (360)
                      ++.-++.....+..
T Consensus       116 ~e~k~~~~~~~~~~  129 (326)
T KOG0473|consen  116 NEQKKTEFFRKLFG  129 (326)
T ss_pred             hhhccCcchHHHHh
Confidence            77766654444433

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.76  E-value=0.012  Score=48.46  Aligned_cols=87  Identities=16%  Similarity=0.113  Sum_probs=57.7

Q ss_pred             hhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcC
Q 039007           30 SLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICEL  109 (360)
Q Consensus        30 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l  109 (360)
                      ..+..+.+..+|+++.|...    .+..-|.-++.|..|+++.+.+..+|..++....+..++...| ..+..|.++...
T Consensus        36 ~ei~~~kr~tvld~~s~r~v----n~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~  110 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLV----NLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKE  110 (326)
T ss_pred             hhhhccceeeeehhhhhHHH----hhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCcccccc
Confidence            34556677777777776632    2233345555666777777777777777777777777777654 556677777777


Q ss_pred             CccceEeecccc
Q 039007          110 QSLQTLILRGCL  121 (360)
Q Consensus       110 ~~L~~L~l~~~~  121 (360)
                      ++++.+++.++.
T Consensus       111 ~~~k~~e~k~~~  122 (326)
T KOG0473|consen  111 PHPKKNEQKKTE  122 (326)
T ss_pred             CCcchhhhccCc
Confidence            777777777654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.37  E-value=0.57  Score=23.98  Aligned_cols=18  Identities=39%  Similarity=0.602  Sum_probs=9.3

Q ss_pred             CCccEEEEeCCCCcccCc
Q 039007           63 QFLRVLDLDDSTIEVLPR   80 (360)
Q Consensus        63 ~~L~~L~l~~~~~~~~~~   80 (360)
                      ++|+.|++.+|.++.+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            345555555555555543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.37  E-value=0.57  Score=23.98  Aligned_cols=18  Identities=39%  Similarity=0.602  Sum_probs=9.3

Q ss_pred             CCccEEEEeCCCCcccCc
Q 039007           63 QFLRVLDLDDSTIEVLPR   80 (360)
Q Consensus        63 ~~L~~L~l~~~~~~~~~~   80 (360)
                      ++|+.|++.+|.++.+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            345555555555555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	360
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		3e-04

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 71/169 (42%), Gaps = 10/169 (5%)
Query: 60  SKSQF--LRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQS---LQT 114
           +  QF  L  L L  + +  LP  I +L  +R L +    ++ +LP  +    +    Q 
Sbjct: 122 TXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181
Query: 115 LILRGCLKLE-----ELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWN 169
           L+    L+LE      LP  I  L +L+   +     S     I  L  L  L +  C  
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA 241
Query: 170 LEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSL 218
           L       G  + L+ LIL DC +L++LP  +  L+  E L L  C +L
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	360
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	7e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  114 bits (288), Expect = 2e-29
 Identities = 56/260 (21%), Positives = 93/260 (35%), Gaps = 54/260 (20%)

Query: 65  LRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLE 124
           L+ + +D + +  LP  +     +  L L+    ++ LP SI  L  L+ L +R C +L 
Sbjct: 106 LQHMTIDAAGLMELPDTMQQFAGLETLTLA-RNPLRALPASIASLNRLRELSIRACPELT 164

Query: 125 ELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLR 184
           ELP+ +    +                    L +L+SL +     +  L   I  L  L+
Sbjct: 165 ELPEPLASTDAS--------------GEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLK 209

Query: 185 SLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQK 244
           SL + +   L +L  A+  L                                     L++
Sbjct: 210 SLKIRNS-PLSALGPAIHHLPK-----------------------------------LEE 233

Query: 245 LFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLS 304
           L + G   L + P     G    L+ L ++DC N + L   +  L  LE L +  C  LS
Sbjct: 234 LDLRGCTALRNYPPIF--GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 305 SLPEDIHHLTTLKTLSIKEC 324
            LP  I  L     + +   
Sbjct: 292 RLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  101 bits (254), Expect = 1e-24
 Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 24/159 (15%)

Query: 65  LRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLE 124
           L+ L L+ + I  LP  I NL++++ L +     +  L  +I  L  L+ L LRGC  L 
Sbjct: 185 LQSLRLEWTGIRSLPASIANLQNLKSLKIR-NSPLSALGPAIHHLPKLEELDLRGCTALR 243

Query: 125 ELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLR 184
             P                             + L+ LI+  C NL  L   I +L+ L 
Sbjct: 244 NYPPIF-----------------------GGRAPLKRLILKDCSNLLTLPLDIHRLTQLE 280

Query: 185 SLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLN 223
            L L  C +L  LPS +  L ++  +++       L+ +
Sbjct: 281 KLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.5 bits (207), Expect = 3e-18
 Identities = 47/275 (17%), Positives = 87/275 (31%), Gaps = 31/275 (11%)

Query: 75  IEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQ-------------------TL 115
           +        +      L       ++   + + + Q                       +
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60

Query: 116 ILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQE--SGIACLSSLRSLIISHCWNLEYL 173
             R    L+     +          +  +   L +       LS L+ + I     L  L
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMEL 119

Query: 174 FEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSL-NLNLNIEMEGEGSH 232
            + + Q +GL +L L     L +LP+++  L+    L +  C  L  L   +        
Sbjct: 120 PDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPL---ASTDA 175

Query: 233 HDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEAL 292
                   +LQ L +     +  LP  +   + + L+ L I +     AL  ++  L  L
Sbjct: 176 SGEHQGLVNLQSLRLEW-TGIRSLPASI--ANLQNLKSLKIRNS-PLSALGPAIHHLPKL 231

Query: 293 ETLLISACRKLSSLPEDIHHLTTLKTLSIKECPAL 327
           E L +  C  L + P        LK L +K+C  L
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 76.0 bits (186), Expect = 4e-15
 Identities = 65/418 (15%), Positives = 129/418 (30%), Gaps = 100/418 (23%)

Query: 5   DCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSIND--ENTSESFFTSCISKS 62
           DC+ +    +    + +    +        +     + +++    E   + F    +  +
Sbjct: 34  DCKDVQDMPKS---ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90

Query: 63  -QFL----RVLDLDDST-----IEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSL 112
            +FL    +      S      IE   R   + +     ++SR     KL  ++ EL+  
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150

Query: 113 QTLILRG-------CLKLEEL-PKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLI- 163
           + +++ G        + L+      ++  +  ++F +  K  +  E+ +  L  L   I 
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 164 ------ISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLIL----- 212
                   H  N++     I     LR         L+       CL     L+L     
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQA--ELR--------RLLKSKPYENCL-----LVLLNVQN 255

Query: 213 --------IDCKSL----------NLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQ-L 253
                   + CK L           L+          HH    T   ++ L +  L    
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 254 LDLPQWLLQGSTKTLQFLG--IEDCP---------NFMALQGSLK-DLEALETLLISAC- 300
            DLP+ +L  + + L  +   I D           N   L   ++  L  LE        
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 301 RKLSSLPEDIHHLTTLKTLSIKECPALWERCKPLTGEDWSKIARIPRIMLDDEMTKSS 358
            +LS  P   H       LS+     +W          +  I     +++ +++ K S
Sbjct: 376 DRLSVFPPSAH--IPTILLSL-----IW----------FDVIKSDVMVVV-NKLHKYS 415

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 38/217 (17%), Positives = 61/217 (28%), Gaps = 72/217 (33%)

Query: 24  SRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPRE-- 81
           +R     +   L    T   S++  + +    T    KS  L+ LD      + LPRE  
Sbjct: 272 TRF--KQVTDFLSAATTTHISLDHHSMT---LTPDEVKSLLLKYLDCR---PQDLPREVL 323

Query: 82  ---------IG-NLKHM--RYLDLSRYCQIKKLPNSI--CELQSLQTLILRGCLK-LEEL 126
                    I  +++     + D  ++    KL   I    L  L+    R     L   
Sbjct: 324 TTNPRRLSIIAESIRDGLATW-DNWKHVNCDKLTTIIESS-LNVLEPAEYRKMFDRLSVF 381

Query: 127 PKDIR----YLVSL---------RMFVVTTKQKSLQES----------GIAC-------- 155
           P         L  +          + V    + SL E            I          
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441

Query: 156 LSSLRSLIISH--------CWNL------EYLFEHIG 178
             +L   I+ H          +L      +Y + HIG
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 54/357 (15%), Positives = 101/357 (28%), Gaps = 109/357 (30%)

Query: 67  VLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKL--- 123
           V + D   ++ +P+ I        L       I    +++       TL L   L     
Sbjct: 30  VDNFDCKDVQDMPKSI--------LSKEEIDHIIMSKDAV-----SGTLRLFWTLLSKQE 76

Query: 124 --------EELPKDIRYLVS------------LRMFV-----------------VTTKQK 146
                   E L  + ++L+S             RM++                 V+  Q 
Sbjct: 77  EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136

Query: 147 --SLQESGIACLSSLRSLIISHCWNLEYLFEHIGQL-SG---LRSLILVDCPSLISLPSA 200
              L++     L  LR          + +    G L SG   +   + +       +   
Sbjct: 137 YLKLRQ----ALLELRP--------AKNVLID-GVLGSGKTWVALDVCLSYKVQCKMDFK 183

Query: 201 V------KCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLL 254
           +       C  +S   +L   + L   ++        H      R H  +  +  L +  
Sbjct: 184 IFWLNLKNC--NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 255 DLPQWLL--------------QGSTKTL---QFLGIEDC--------PNFMALQGSLKDL 289
                LL                S K L   +F  + D          +      +L   
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 290 EALETLLISACRKLSSLPEDIH--HLTTLKTL--SIKECPALWERCKPLTGEDWSKI 342
           E    LL     +   LP ++   +   L  +  SI++  A W+  K +  +  + I
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.9 bits (171), Expect = 3e-13
 Identities = 51/311 (16%), Positives = 97/311 (31%), Gaps = 46/311 (14%)

Query: 51  SESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQ 110
           + S FT       +           E       NLK +  ++L     + +LP+ + +L 
Sbjct: 456 ANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515

Query: 111 SLQTLILRG---------CLKLEELPKDIRYLVSLRMFVVTTKQ-KSL-QESGIACLSSL 159
            LQ+L +                 L  D      +++F +     +     + +  +  L
Sbjct: 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKL 575

Query: 160 RSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAV-KCLSSSETLILIDCK-- 216
             L   H   + +L E  G    L  L L     +  +P          E L     K  
Sbjct: 576 GLLDCVHN-KVRHL-EAFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNKLK 632

Query: 217 ---------------SLNLNLN-IEMEGEGSHHDRDNTR-THLQKLFVSGLKQLLDLPQW 259
                          S++ + N I  EG       D+ +  +   + +S   ++   P  
Sbjct: 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY-NEIQKFPTE 691

Query: 260 LLQGSTKTLQFLG-----IEDCPN--FMALQGSLKDLEALETLLISACRKLSSLPEDIHH 312
           L    +  +  +      +   P        G+ K+   L T+ +    KL+SL +D   
Sbjct: 692 LFATGSP-ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRA 749

Query: 313 --LTTLKTLSI 321
             L  L  + +
Sbjct: 750 TTLPYLSNMDV 760

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 35/297 (11%), Positives = 82/297 (27%), Gaps = 27/297 (9%)

Query: 42  LFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPRE--IGNLKHMRYLDLSRYCQI 99
             S        +           +++  +  + +E  P    +  +  +  LD   + ++
Sbjct: 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV-HNKV 585

Query: 100 KKLPNSICELQSLQTLILRGCLKLEELPKDI-RYLVSLRMFVVTTKQ-KSL-QESGIACL 156
           + L  +      L  L L    ++EE+P+D   +   +     +  + K +        +
Sbjct: 586 RHLE-AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSV 643

Query: 157 SSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCK 216
             + S+  S+   +     +I         I     +  ++  +   +    T +     
Sbjct: 644 YVMGSVDFSYN-KIGSEGRNISCSMDDYKGI-----NASTVTLSYNEIQKFPTELFATGS 697

Query: 217 SLN-LNLN------IEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQ 269
            ++ + L+      I                 L  + +    +L  L       +   L 
Sbjct: 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF-NKLTSLSDDFRATTLPYLS 756

Query: 270 FLGIEDC-----PNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSI 321
            + +        P        LK             R L   P  I    +L  L I
Sbjct: 757 NMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.0 bits (153), Expect = 5e-11
 Identities = 33/215 (15%), Positives = 67/215 (31%), Gaps = 29/215 (13%)

Query: 24  SRNDFSSLLSDLRRVRTILFSIN------DENTSESFFTSCISKSQFLRVLDLD------ 71
           S N   S   ++         IN        N  + F T   +    +  + L       
Sbjct: 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS 711

Query: 72  --DSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSI--CELQSLQTLILRGCLKLEELP 127
             +++++       N   +  +DL  + ++  L +      L  L  + +         P
Sbjct: 712 IPENSLKPKDGNYKNTYLLTTIDLR-FNKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFP 769

Query: 128 KDIRYLVSLRMF-------VVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQL 180
                   L+ F           +      +GI    SL  L I    ++  + E +   
Sbjct: 770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKL--T 826

Query: 181 SGLRSLILVDCPSL-ISLPSAVKCLSSSETLILID 214
             L  L + D P++ I + S    + +   ++L D
Sbjct: 827 PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYD 861

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 35/250 (14%), Positives = 77/250 (30%), Gaps = 36/250 (14%)

Query: 72  DSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIR 131
           D   +    ++ N   +  L L+ +    ++P++I +L  L+ L            +   
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH-SETVSGRLF- 366

Query: 132 YLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDC 191
                            +E         +  I  H   +   ++    LS L    +   
Sbjct: 367 ---------------GDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN 411

Query: 192 PSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLK 251
           P +  +            + L D +  NL   I    +          T LQ ++ +   
Sbjct: 412 PEMKPIK-------KDSRISLKDTQIGNLTNRITFISKAIQR-----LTKLQIIYFAN-S 458

Query: 252 QLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIH 311
                   +      +      E+         S  +L+ L  + +  C  ++ LP+ ++
Sbjct: 459 PFTYDNIAVDWEDANSDYAKQYENEEL------SWSNLKDLTDVELYNCPNMTQLPDFLY 512

Query: 312 HLTTLKTLSI 321
            L  L++L+I
Sbjct: 513 DLPELQSLNI 522

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 41/281 (14%), Positives = 85/281 (30%), Gaps = 47/281 (16%)

Query: 57  SCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICE-LQSLQTL 115
           + + K + L +L+   + +E      G+   +  L+L+ Y QI ++P + C   + ++ L
Sbjct: 324 TSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLA-YNQITEIPANFCGFTEQVENL 382

Query: 116 ILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISH-------CW 168
                 KL+ +P                            +S + ++  S+         
Sbjct: 383 SFAHN-KLKYIPNIF---------------------DAKSVSVMSAIDFSYNEIGSVDGK 420

Query: 169 NLEYLFEHIGQLSGLRSLILVDCPSLISLP-SAVKCLSSSETLILIDCK--SLNLNLNIE 225
           N + L     +   + S+ L +   +   P       S   ++ L+      +  N   +
Sbjct: 421 NFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD 479

Query: 226 MEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDC-----PNFM 280
                 +         L  + +    +L  L       +   L  + +        P   
Sbjct: 480 ENENFKNT------YLLTSIDLRF-NKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQP 532

Query: 281 ALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSI 321
               +LK             R L   PE I    +L  L I
Sbjct: 533 LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 44/360 (12%), Positives = 106/360 (29%), Gaps = 68/360 (18%)

Query: 24  SRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDD----------- 72
           + +     +    R+      I   + + +F +  + +   LR   + +           
Sbjct: 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEA 226

Query: 73  ---------STIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKL 123
                       +    +  NLK +  +++     + KLP  +  L  +Q + +    + 
Sbjct: 227 WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN-RG 285

Query: 124 EELPKDIRYLVSLRMFVVTTKQKSLQ-----------ESGIACLSSLRSLIISHCWNLEY 172
               +      +L    V  K + +            E+ +  +  L  L   +   LE 
Sbjct: 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEG 344

Query: 173 LFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSS-ETLILIDCK--------------- 216
                G    L SL L     +  +P+     +   E L     K               
Sbjct: 345 KLPAFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403

Query: 217 --SLNLNLN----IEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQF 270
             +++ + N    ++ +             ++  + +S   Q+   P+ L    +  L  
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN-NQISKFPKELFSTGSP-LSS 461

Query: 271 LGIEDC-------PNFMALQGSLKDLEALETLLISACRKLSSLPEDIH--HLTTLKTLSI 321
           + +           +      + K+   L ++ +    KL+ L +D     L  L  + +
Sbjct: 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDL 520

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 31/281 (11%), Positives = 73/281 (25%), Gaps = 38/281 (13%)

Query: 59  ISKSQFLRVLDLDDSTIE-VLPREIGNLKHMRYLDLS----RYCQIKKLPNSICELQSLQ 113
           ++ +  +  L L+       +P  IG L  +  L L     +  +    P  I    S +
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 114 TLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQES---GIACLSSLRSLIISHCWNL 170
                     +             +          Q+S             +      N+
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN-NI 195

Query: 171 EYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEG 230
            ++ + + +L+ LR   + + P             +       + ++             
Sbjct: 196 TFVSKAVMRLTKLRQFYMGNSP-----------FVAENICEAWENENSEYAQQY-----K 239

Query: 231 SHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFL--------GIEDCPNFMAL 282
           +   + +    L  + V     L  LP +L   +   +Q +          E   +    
Sbjct: 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFL--KALPEMQLINVACNRGISGEQLKDDWQA 297

Query: 283 QGSLKDLEALETLLISACRKLSSL--PEDIHHLTTLKTLSI 321
                  E ++ + I     L +      +  +  L  L  
Sbjct: 298 LADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLEC 337

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 15/137 (10%), Positives = 38/137 (27%), Gaps = 32/137 (23%)

Query: 58  CISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYC------QIKKLPNSICELQS 111
             +   +L  +DL  ++    P +  N   ++   +           +++ P  I    S
Sbjct: 508 RATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567

Query: 112 LQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLE 171
           L  L +     + ++ + I                           ++  L I    N+ 
Sbjct: 568 LTQLQIGSN-DIRKVNEKI-------------------------TPNISVLDIKDNPNIS 601

Query: 172 YLFEHIGQLSGLRSLIL 188
               ++         +L
Sbjct: 602 IDLSYVCPYIEAGMYML 618

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 28/226 (12%), Positives = 65/226 (28%), Gaps = 30/226 (13%)

Query: 105 SICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQE--SGIACLSSLRSL 162
           S+     +  L L G      +P  I  L  L +  + +  + + E   G   +S+  S 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 163 IISHCWNLEYLFEHIG-----QLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKS 217
                  + Y    +        S L    +   P   S+  + +       +  +    
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 218 LNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGS--TKTLQFLGIED 275
             ++  +                 L KL      +   +           +  +    E 
Sbjct: 196 TFVSKAV---------------MRLTKL------RQFYMGNSPFVAENICEAWENENSEY 234

Query: 276 CPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSI 321
              +        +L+ L  + +  C  L+ LP  +  L  ++ +++
Sbjct: 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 62.6 bits (152), Expect = 7e-11
 Identities = 58/278 (20%), Positives = 96/278 (34%), Gaps = 62/278 (22%)

Query: 65  LRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLE 124
           +  L + D+ +  LP     L   R L++S   Q+  LP     L  L          L 
Sbjct: 63  ITTLVIPDNNLTSLPALPPEL---RTLEVS-GNQLTSLPVLPPGLLELSIFSNPLT-HLP 117

Query: 125 ELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQL---- 180
            LP  +  L     ++   +  SL          L+ L +S    L  L     +L    
Sbjct: 118 ALPSGLCKL-----WIFGNQLTSLPVL----PPGLQELSVSDN-QLASLPALPSELCKLW 167

Query: 181 -------------SGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEME 227
                        SGL+ L + D   L SLP+    L     L   + +  +L       
Sbjct: 168 AYNNQLTSLPMLPSGLQELSVSDN-QLASLPTLPSEL---YKLWAYNNRLTSLPALP--- 220

Query: 228 GEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLK 287
                       + L++L VSG  +L  LP    +     L+ L +        L     
Sbjct: 221 ------------SGLKELIVSGN-RLTSLPVLPSE-----LKELMVSGNR----LTSLPM 258

Query: 288 DLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECP 325
               L +L +   + L+ LPE + HL++  T++++  P
Sbjct: 259 LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 295

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 11/121 (9%), Positives = 29/121 (23%), Gaps = 3/121 (2%)

Query: 65  LRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLE 124
           L  L +  + +  LP  + +L     ++L     + +         +         ++ +
Sbjct: 263 LLSLSVYRNQLTRLPESLIHLSSETTVNLEG-NPLSERTLQALREITSAPGYSGPIIRFD 321

Query: 125 ELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLR 184
                                   +E   A              N +     + +LS   
Sbjct: 322 MAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMF--GQEDNADAFSLFLDRLSETE 379

Query: 185 S 185
           +
Sbjct: 380 N 380

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 53/280 (18%), Positives = 95/280 (33%), Gaps = 28/280 (10%)

Query: 65  LRVLDLDDSTIEVLPRE-IGNLKHMRYLDLSRYCQIKKL-PNSICELQSLQTLILRGCLK 122
           + VL+L  + +  LP         +  LD+  +  I KL P    +L  L+ L L+   +
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVG-FNTISKLEPELCQKLPMLKVLNLQHN-E 84

Query: 123 LEELPKD-IRYLVSLRM-FVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEH-IGQ 179
           L +L      +  +L    +++   + ++ +      +L +L +SH   L         Q
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQ 143

Query: 180 LSGLRSLILVDCP--SLISLPSAVKCLSSSETLILIDCK----------------SLNLN 221
           L  L+ L+L +    +L S    +   SS + L L   +                 L LN
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203

Query: 222 LNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKT-LQFLGIEDCPNFM 280
                         +   T ++ L +S   QL         G   T L  L +      +
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNS-QLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262

Query: 281 ALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLS 320
               S   L  LE   +            +H L  ++ L+
Sbjct: 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 51/278 (18%), Positives = 99/278 (35%), Gaps = 37/278 (13%)

Query: 65  LRVLDLDDSTIEVLPRE-IGNLKHMRYLDLSRYCQIKKL-PNSICELQSLQTLILRGCLK 122
           L  L L  ++I+ +        K++  LDLS +  +      +  +L++LQ L+L    K
Sbjct: 99  LTELHLMSNSIQKIKNNPFVKQKNLITLDLS-HNGLSSTKLGTQVQLENLQELLLSNN-K 156

Query: 123 LEELPKDIRYLVSLRMFVV----TTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIG 178
           ++ L  +   + +          + + K         +  L  L +++      L E + 
Sbjct: 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216

Query: 179 ---QLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLN-IEMEGEGSHHD 234
                + +R+L L +   L +  +     ++   L   +   L+L+ N + + G  S   
Sbjct: 217 LELANTSIRNLSLSNS-QLSTTSN-----TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 270

Query: 235 ---------RDNTRTHLQKLFVSGLKQL--LDLPQWLLQGSTKTLQFLGIEDCPNFMALQ 283
                      N   HL    + GL  +  L+L +   + S        I+D        
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD-------- 322

Query: 284 GSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSI 321
            S + L+ LE L +               L  LK LS+
Sbjct: 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 47/340 (13%), Positives = 101/340 (29%), Gaps = 49/340 (14%)

Query: 24  SRNDFSSL----LSDLRRVRTILFSIND-ENTSESFFTSCISKSQFLRVLDLDDSTIEVL 78
           S N  SS        L  ++ +L S N  +           + S  L+ L+L  + I+  
Sbjct: 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS--LKKLELSSNQIKEF 186

Query: 79  -PREIGNLKHMRYLDLS--------------------------RYCQIKKLPNSI---CE 108
            P     +  +  L L+                             Q+    N+     +
Sbjct: 187 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246

Query: 109 LQSLQTLILRGCLKLEELPKD-IRYLVSLRMFVVT-TKQKSLQESGIACLSSLRSLIISH 166
             +L  L L     L  +  D   +L  L  F +     + L    +  L ++R L +  
Sbjct: 247 WTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305

Query: 167 CWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSL---NLNLN 223
             +       +  L  +          L  L      +   ++ +     +L   +L+ +
Sbjct: 306 --SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363

Query: 224 -IEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMAL 282
              +    +        + L  L ++   ++  +           L+ L +        L
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTK-NKISKIESDAFSWLGH-LEVLDLGLNEIGQEL 421

Query: 283 QGS-LKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSI 321
            G   + LE +  + +S  + L         + +L+ L +
Sbjct: 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 25/150 (16%), Positives = 51/150 (34%), Gaps = 7/150 (4%)

Query: 52  ESFFTSCISKSQFLRVLDLDD---STIEVLPREIGNLKHMRYLDLSRYCQIKKLPNS-IC 107
                +  +    L+ L L       ++  P     L+++  LDLS    I  + +  + 
Sbjct: 443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS-NNNIANINDDMLE 501

Query: 108 ELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHC 167
            L+ L+ L L+    L  L K       +      +    L          +   +    
Sbjct: 502 GLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDEIPVEVFKDL 559

Query: 168 WNLEYLFEHIGQLSGLRSLILVDCPSLISL 197
           + L+ +   +  L+ L + +  +  SL SL
Sbjct: 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSL 589

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 46/287 (16%), Positives = 99/287 (34%), Gaps = 43/287 (14%)

Query: 65  LRVLDLDDSTIEVL-PREIGNLKHMRYLDLSRYCQIKKL-PNSICELQSLQTLILRGCLK 122
              L+   + +  +       L ++ +LDL+R CQI  +  ++      L TL+L     
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTR-CQIYWIHEDTFQSQHRLDTLVLTAN-P 92

Query: 123 LEELPKDI-RYLVSLRMFVVTTKQ-KSLQESGIACLSSLRSLIISH-------------C 167
           L  + +       +L+          S+    +    +L SL +                
Sbjct: 93  LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152

Query: 168 WNLEYLF-----------EHIGQLSGLRSLIL-VDCPSLISLPSAVKCLSSSETLILIDC 215
             L+ L            E +  L    +L L ++   +  +       +  ++L     
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF--- 209

Query: 216 KSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTK-TLQFLGIE 274
                NL +  +G      +++T   L       +    D+   + +G  + +++ + ++
Sbjct: 210 -GGTQNLLVIFKG-----LKNSTIQSLWLGTFEDM-DDEDISPAVFEGLCEMSVESINLQ 262

Query: 275 DCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSI 321
               F     +      L+ L ++A   LS LP  +  L+TLK L +
Sbjct: 263 KHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVL 308

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 59/266 (22%), Positives = 101/266 (37%), Gaps = 47/266 (17%)

Query: 65  LRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLP-NSICELQSLQTLILRG-CLK 122
           L+ LDL  + +  LP  +  L  ++ L LS   + + L   S     SL  L ++G   +
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLKKLVLS-ANKFENLCQISASNFPSLTHLSIKGNTKR 338

Query: 123 LEELPKDIRYLVSLRMFVVTT---KQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQ 179
           LE     +  L +LR   ++    +        +  LS L+SL +S+            +
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-----------E 387

Query: 180 LSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTR 239
              L++    +CP L  L      L+ +  L + D +S   NL                 
Sbjct: 388 PLSLKTEAFKECPQLELL-----DLAFTR-LKVKDAQSPFQNL----------------- 424

Query: 240 THLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCP---NFMALQGSLKDLEALETLL 296
             L+ L +S    L    + L  G    LQ L ++        +    SL+ L  LE L+
Sbjct: 425 HLLKVLNLSH-SLLDISSEQLFDGLPA-LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482

Query: 297 ISACRKLSSLPEDI-HHLTTLKTLSI 321
           +S C  LSS+ +     L  +  + +
Sbjct: 483 LSFCD-LSSIDQHAFTSLKMMNHVDL 507

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 52/329 (15%), Positives = 113/329 (34%), Gaps = 40/329 (12%)

Query: 24  SRNDFSSL----LSDLRRVRTILFSIND-ENTSESFFTSCISKSQFLRVLDLDDSTIEVL 78
             N  SS+         +++ + F  N     S+   +S    +     L+L+ + I  +
Sbjct: 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT--NLSLNLNGNDIAGI 194

Query: 79  PREIGNLKHMRYLDLSRYCQIKKLPNSI--CELQSLQTLILRGCLKLEELPKDI---RYL 133
                +    + L+      +  +   +    +QSL        +  E++   +      
Sbjct: 195 EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFED-MDDEDISPAVFEGLCE 253

Query: 134 VSLRMFVVTTKQ-KSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCP 192
           +S+    +      ++  +   C S L+ L ++   +L  L   +  LS L+ L+L    
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSAN- 311

Query: 193 SLISLPSAV-KCLSSSETLILIDC-----------------KSLNLNLNIEMEGEGSHHD 234
              +L         S   L +                    + L+L+ + ++E     + 
Sbjct: 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD-DIETSDCCNL 370

Query: 235 RDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCP-NFMALQGSLKDLEALE 293
           +    +HLQ L +S   + L L     +   + L+ L +          Q   ++L  L+
Sbjct: 371 QLRNLSHLQSLNLSY-NEPLSLKTEAFKECPQ-LELLDLAFTRLKVKDAQSPFQNLHLLK 428

Query: 294 TLLISACRKLSSLPEDI-HHLTTLKTLSI 321
            L +S    L    E +   L  L+ L++
Sbjct: 429 VLNLSHSL-LDISSEQLFDGLPALQHLNL 456

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 40/264 (15%), Positives = 82/264 (31%), Gaps = 33/264 (12%)

Query: 65  LRVLDLDDSTIEVLPR--EIGNLKHMRYLDLSRYCQIKKLP-NSICELQSLQTLILRGCL 121
           L+ L+L  +  + L       NL +++ L +       ++       L SL  L ++  L
Sbjct: 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA-L 158

Query: 122 KLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLS 181
            L                             +  +  +  L +    +   L      LS
Sbjct: 159 SLRNYQSQS----------------------LKSIRDIHHLTLHLSESAFLLEIFADILS 196

Query: 182 GLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNL-NLNIEMEGEGSHHDRDNTRT 240
            +R L L D        S +     S  +  +  +   L + +     +   +  + +  
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256

Query: 241 HLQKLFVSGLKQLLDLPQWLLQGSTK----TLQFLGIEDCPNFMALQGSLKDLEALETLL 296
                 ++GL         ++    K    T++ L I     F  L      LE ++ + 
Sbjct: 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316

Query: 297 ISACRKLSSLPEDI-HHLTTLKTL 319
           +    K+  +P     HL +L+ L
Sbjct: 317 VENS-KVFLVPCSFSQHLKSLEFL 339

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 47/292 (16%), Positives = 86/292 (29%), Gaps = 37/292 (12%)

Query: 65  LRVLDLDDSTIEVLPRE-IGNLKHMRYLDLSRYCQIKKLPNSICE-LQSLQTLILRGCLK 122
           ++ LDL  + I  +    +    +++ L L    +I  +       L SL+ L L     
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILK-SSRINTIEGDAFYSLGSLEHLDLSDN-H 85

Query: 123 LEELPKD-IRYLVSLR----------------MFVVTTKQKSLQESGIACLSSLRSLIIS 165
           L  L       L SL+                +F   T  ++L+   +   S +R +  +
Sbjct: 86  LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 166 HCWNLEYLF-----------EHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILID 214
              +L  L            + +  +  +  L L    S   L      LSS   L L D
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 215 C--KSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLG 272
                   +     E            + L     + L +LL     L +         G
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265

Query: 273 IEDCPNF---MALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSI 321
           + D       +  +    +   +  L I        L      L  +K +++
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 27/172 (15%), Positives = 56/172 (32%), Gaps = 16/172 (9%)

Query: 24  SRNDFSSL----LSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP 79
             +    +       L+ +  +  S N         ++C      L+ L L  + +  + 
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377

Query: 80  REIG---NLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSL 136
           +       LK++  LD+S       +P+S    + ++ L L     +  +   I    +L
Sbjct: 378 KTGEILLTLKNLTSLDIS-RNTFHPMPDSCQWPEKMRFLNLSST-GIRVVKTCI--PQTL 433

Query: 137 RMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLIL 188
            +  V+             L  L+ L IS    L+ L         L  + +
Sbjct: 434 EVLDVSNNNLDSFSLF---LPRLQELYISRN-KLKTL-PDASLFPVLLVMKI 480

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 47/270 (17%), Positives = 103/270 (38%), Gaps = 28/270 (10%)

Query: 65  LRVLDLDDSTIEVLPREI-GNLKHMRYLDLSRYCQIKKLPNSI-CELQSLQTLILRGCLK 122
           + +L+L+D  IE +          ++ L +  +  I+ LP  +   +  L  L+L     
Sbjct: 71  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMG-FNAIRYLPPHVFQNVPLLTVLVLERN-D 128

Query: 123 LEELPKDI-RYLVSLRMFVVTTKQ-KSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQL 180
           L  LP+ I      L    ++    + +++      +SL++L +S    L ++   +  +
Sbjct: 129 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHV--DLSLI 185

Query: 181 SGLRSLILVDCP-SLISLPSAVKCLSSSETLI-------LIDCKSLNLNLN-IEMEGEGS 231
             L    +     S +++P AV+ L +S   I        ++   L L  N +       
Sbjct: 186 PSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLL 245

Query: 232 HHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEA 291
           ++        L ++ +S   +L  +         + L+ L I +    +AL    + +  
Sbjct: 246 NY------PGLVEVDLSYN-ELEKIMYHPFVKMQR-LERLYISNN-RLVALNLYGQPIPT 296

Query: 292 LETLLISACRKLSSLPEDIHHLTTLKTLSI 321
           L+ L +S    L  +  +      L+ L +
Sbjct: 297 LKVLDLSHNH-LLHVERNQPQFDRLENLYL 325

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 37/260 (14%), Positives = 90/260 (34%), Gaps = 30/260 (11%)

Query: 65  LRVLDLDDSTIEVLPREIG-NLKHMRYLDLSRYCQIKKLP-NSICELQSLQTLILRGCLK 122
            ++  + DS+++     +  +  +++ LDLS    + ++    +     L+ L L     
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLS-GNPLSQISAADLAPFTKLELLNLSSN-V 69

Query: 123 LEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSG 182
           L E   D+  L +LR   +      +QE  +    S+ +L  ++  N+  +     +  G
Sbjct: 70  LYETL-DLESLSTLRTLDLNNNY--VQE--LLVGPSIETLHAANN-NISRV--SCSRGQG 121

Query: 183 LRSLILVDCPSLISLPS-AVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTH 241
            +++ L +   +  L      C S  + L L     LN    +      +          
Sbjct: 122 KKNIYLANN-KITMLRDLDEGCRSRVQYLDL----KLNEIDTVNFAELAASS------DT 170

Query: 242 LQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACR 301
           L+ L +     + D+   +       L+ L +        +    +    +  + +    
Sbjct: 171 LEHLNLQYN-FIYDVKGQV---VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN- 224

Query: 302 KLSSLPEDIHHLTTLKTLSI 321
           KL  + + +     L+   +
Sbjct: 225 KLVLIEKALRFSQNLEHFDL 244

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 19/158 (12%), Positives = 54/158 (34%), Gaps = 12/158 (7%)

Query: 59  ISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLP-NSICELQSLQTLIL 117
           +     +  L   ++ I  +       +  + + L+   +I  L          +Q L L
Sbjct: 95  LLVGPSIETLHAANNNISRVSCSR--GQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDL 151

Query: 118 RGCLKLEELPKD--IRYLVSLRMFVVTTKQ-KSLQESGIACLSSLRSLIISHCWNLEYLF 174
           +   +++ +          +L    +       ++       + L++L +S    L ++ 
Sbjct: 152 KLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSN-KLAFMG 207

Query: 175 EHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLIL 212
                 +G+  + L +   L+ +  A++   + E   L
Sbjct: 208 PEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDL 244

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 11/55 (20%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 65  LRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRG 119
           L+ LDL  + +  +  E  +   + ++ L    ++  +  ++   Q+L+   LRG
Sbjct: 193 LKTLDLSSNKLAFMGPEFQSAAGVTWISLR-NNKLVLIEKALRFSQNLEHFDLRG 246

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 46/362 (12%), Positives = 95/362 (26%), Gaps = 61/362 (16%)

Query: 16  LSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTI 75
             + + S +  D+ S      +         + N + S    C+        L L+   +
Sbjct: 17  SFYNTISGTYADYFSAWDKWEKQAL---PGENRNEAVSLLKECLINQ--FSELQLNRLNL 71

Query: 76  EVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQ-----------------SLQTLILR 118
             LP  +     +  L+++    +  LP     L+                 SL+ L + 
Sbjct: 72  SSLPDNLP--PQITVLEIT-QNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVD 128

Query: 119 GCLKLEELPKDIRYLVSLRMF-----VVTTKQKSLQESGI---------ACLSSLRSLII 164
              +L  LP+    L  +        ++     SL+   +             SL +L +
Sbjct: 129 NN-QLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELPESLEALDV 187

Query: 165 SHCWNLEYLFEHIGQLSGLRSLIL---VDCPSLISLPSAVKCLSSSETLIL--------- 212
           S    LE L     +        +        +  +P  +  L  + T+IL         
Sbjct: 188 STN-LLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRI 246

Query: 213 -IDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFL 271
                      +                T  + L  +      +      + S  +  + 
Sbjct: 247 RESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPE-----NKQSDVSQIWH 301

Query: 272 GIEDCPNFMALQGSLKDLEALE--TLLISACRKLSSLPEDIHHLTTLKTLSIKECPALWE 329
             E   +       L  L              ++++  E +     L+  S        E
Sbjct: 302 AFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATE 361

Query: 330 RC 331
            C
Sbjct: 362 SC 363

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 49/258 (18%), Positives = 97/258 (37%), Gaps = 44/258 (17%)

Query: 59  ISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILR 118
           +  S FL+++D+D+++++ LP    +L+    +      Q+++LP  +  L  L  +   
Sbjct: 149 LQNSSFLKIIDVDNNSLKKLPDLPPSLEF---IAAG-NNQLEELPE-LQNLPFLTAIYAD 203

Query: 119 GCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIG 178
               L++LP     L S+         + L E  +  L  L ++   +   L+ L +   
Sbjct: 204 NN-SLKKLPDLPLSLESIVAG--NNILEELPE--LQNLPFLTTIYADNN-LLKTLPDLPP 257

Query: 179 QLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNT 238
               L +L + D   L  LP   + L+    L + +     L+                 
Sbjct: 258 S---LEALNVRDN-YLTDLPELPQSLTF---LDVSENIFSGLSELPP------------- 297

Query: 239 RTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLIS 298
             +L  L  S   ++  L          +L+ L + +    + L      LE     LI+
Sbjct: 298 --NLYYLNASSN-EIRSLCDLP-----PSLEELNVSNN-KLIELPALPPRLER----LIA 344

Query: 299 ACRKLSSLPEDIHHLTTL 316
           +   L+ +PE   +L  L
Sbjct: 345 SFNHLAEVPELPQNLKQL 362

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 48/275 (17%), Positives = 84/275 (30%), Gaps = 42/275 (15%)

Query: 48  ENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSIC 107
           E    +         +    L+L++  +  LP    +L+    L  S    + +LP    
Sbjct: 56  EQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLES---LVASC-NSLTELPELPQ 111

Query: 108 ELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHC 167
            L+SL          L +LP  + YL      V   + + L E  +   S L+ + + + 
Sbjct: 112 SLKSLLVDNNNLK-ALSDLPPLLEYL-----GVSNNQLEKLPE--LQNSSFLKIIDVDNN 163

Query: 168 WNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEME 227
            +L+ L +       L  +   +   L  LP     L     +   +     L       
Sbjct: 164 -SLKKLPDLPPS---LEFIAAGNN-QLEELPELQN-LPFLTAIYADNNSLKKLPDLP--- 214

Query: 228 GEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLK 287
                         L+ +       L +LP+     +   L  +  ++      L     
Sbjct: 215 ------------LSLESIVAGN-NILEELPEL---QNLPFLTTIYADNN-LLKTLPDLPP 257

Query: 288 DLEALETLLISACRKLSSLPEDIHHLTTLKTLSIK 322
            LEAL          L+ LPE    LT L      
Sbjct: 258 SLEALNVRDN----YLTDLPELPQSLTFLDVSENI 288

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 46/259 (17%), Positives = 84/259 (32%), Gaps = 49/259 (18%)

Query: 59  ISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILR 118
           +    FL  +  D+++++ LP    +L+    +       +++LP  +  L  L T+   
Sbjct: 191 LQNLPFLTAIYADNNSLKKLPDLPLSLES---IVAG-NNILEELP-ELQNLPFLTTIYAD 245

Query: 119 GCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGI-ACLSSLRSLIISHCWNLEYLFEHI 177
               L+ LP     L +L +            + +     SL  L +S       L E  
Sbjct: 246 NN-LLKTLPDLPPSLEALNVR-------DNYLTDLPELPQSLTFLDVSEN-IFSGLSELP 296

Query: 178 GQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDN 237
             L     L       + SL        S E L + + K + L                 
Sbjct: 297 PNL---YYLNASSN-EIRSLCD---LPPSLEELNVSNNKLIELPALP------------- 336

Query: 238 TRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLI 297
               L++L  S    L ++P+       + L+ L +E            + +E L     
Sbjct: 337 --PRLERLIASFN-HLAEVPELP-----QNLKQLHVEYN-PLREFPDIPESVEDLR---- 383

Query: 298 SACRKLSSLPEDIHHLTTL 316
                L+ +PE   +L  L
Sbjct: 384 -MNSHLAEVPELPQNLKQL 401

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 41/250 (16%), Positives = 72/250 (28%), Gaps = 39/250 (15%)

Query: 59  ISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILR 118
           +    FL  +  D++ ++ LP    +L+ +   D      +  LP     L  L      
Sbjct: 233 LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN----YLTDLPELPQSLTFLDVS--- 285

Query: 119 GCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIG 178
                  L +    L  L          +   S      SL  L +S+   L  L     
Sbjct: 286 -ENIFSGLSELPPNLYYLNA------SSNEIRSLCDLPPSLEELNVSNN-KLIELPALPP 337

Query: 179 QLSGLRSLILVDCP--SLISLPSAVKCLSSSETLI------LIDCKSLNLNLNIEMEGEG 230
           +   L  LI        +  LP  +K L      +          + L +N ++    E 
Sbjct: 338 R---LERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE- 393

Query: 231 SHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLG--IEDCPNFMALQGSLKD 288
                     +L++L V     L + P      S + L+     + D   F        +
Sbjct: 394 -------LPQNLKQLHVETN-PLREFPDIP--ESVEDLRMNSERVVDPYEFAHETTDKLE 443

Query: 289 LEALETLLIS 298
            +  E     
Sbjct: 444 DDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 54/279 (19%), Positives = 87/279 (31%), Gaps = 54/279 (19%)

Query: 64  FLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCL-- 121
           FL+      S +  +P E  N+K       +     +  P    E + +    LR CL  
Sbjct: 12  FLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR 71

Query: 122 ----------KLEELPKDIRYLVSLRMF--------VVTTKQKSLQESGIAC------LS 157
                      L  LP+   +L SL            +    KSL               
Sbjct: 72  QAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPP 131

Query: 158 SLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKS 217
            L  L +S+   LE L E +   S L+ + + +  SL  LP     L   E +   + + 
Sbjct: 132 LLEYLGVSNN-QLEKLPE-LQNSSFLKIIDVDNN-SLKKLPDLPPSL---EFIAAGNNQL 185

Query: 218 LNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCP 277
             L     +               L  ++      L  LP   L      L+ +   +  
Sbjct: 186 EELPELQNL-------------PFLTAIYADNN-SLKKLPDLPLS-----LESIVAGN-- 224

Query: 278 NFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTL 316
           N +     L++L  L T+       L +LP+    L  L
Sbjct: 225 NILEELPELQNLPFLTTIYADNNL-LKTLPDLPPSLEAL 262

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 50.3 bits (120), Expect = 5e-07
 Identities = 37/270 (13%), Positives = 78/270 (28%), Gaps = 36/270 (13%)

Query: 65  LRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLE 124
           L  L + ++ +  L      +  ++ LDLS +  +  +  +  +   L+ L L     + 
Sbjct: 280 LERLYISNNRLVALNLYGQPIPTLKVLDLS-HNHLLHVERNQPQFDRLENLYLDHN-SIV 337

Query: 125 ELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISH----CWNLEYLFEHIGQL 180
            L                               +L++L +SH    C +L  LF ++ + 
Sbjct: 338 TLKLST-------------------------HHTLKNLTLSHNDWDCNSLRALFRNVARP 372

Query: 181 SGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRT 240
           +   +           L   + C  S +  +    + + L   +E               
Sbjct: 373 AVDDADQHCKIDY--QLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTI 430

Query: 241 HLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISAC 300
           +  +     + Q   +P   LQG+ +    +              ++  + L+ L     
Sbjct: 431 NSVQSLSHYITQQGGVP---LQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEID 487

Query: 301 RKLSSLPEDIHHLTTLKTLSIKECPALWER 330
             L         L        K    L ER
Sbjct: 488 TNLRRYRLPKDGLARSSDNLNKVFTHLKER 517

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 50/338 (14%), Positives = 120/338 (35%), Gaps = 50/338 (14%)

Query: 20  SASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP 79
           +    + ++  + S+L+          D  T + +F          +++   +ST+  LP
Sbjct: 8   NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP 67

Query: 80  REI-GNLKHMRYLDLSRYCQIKKLP-NSICELQSLQTLILRGCL---------------- 121
             +  + + +  L+L+   QI+++   +     ++Q L +                    
Sbjct: 68  AALLDSFRQVELLNLN-DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126

Query: 122 -------KLEELPKDI-RYLVSLRMFVVTTKQ-KSLQESGIACLSSLRSLIISHCWNLEY 172
                   L  LP+ I      L    ++    + +++      +SL++L +S    L +
Sbjct: 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTH 185

Query: 173 LFEHIGQLSGLRSLILVDCP-SLISLPSAVKCLSSSETLI-------LIDCKSLNLNLN- 223
           +   +  +  L    +     S +++P AV+ L +S   I        ++   L L  N 
Sbjct: 186 V--DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN 243

Query: 224 IEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQ 283
           +       ++        L ++ +S   +L  +         + L+ L I +    +AL 
Sbjct: 244 LTDTAWLLNY------PGLVEVDLSYN-ELEKIMYHPFVKMQR-LERLYISNN-RLVALN 294

Query: 284 GSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSI 321
              + +  L+ L +S    L  +  +      L+ L +
Sbjct: 295 LYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYL 331

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 33/212 (15%), Positives = 71/212 (33%), Gaps = 30/212 (14%)

Query: 59  ISKSQFLRVLDLDDSTIEVLPREI--------------------GNLKHMRYLDLSRYCQ 98
           ++    +  LD   ++I V+   +                     N   +  +DLS Y +
Sbjct: 207 LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLS-YNE 265

Query: 99  IKKLPNSICE-LQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLS 157
           ++K+       +Q L+ L +    +L  L    + + +L++  ++       E       
Sbjct: 266 LEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD 324

Query: 158 SLRSLIISHCWNLEYLFEHIGQLSGLRSLILVD----CPSLISLPSAVKCLSSSETLILI 213
            L +L + H  ++  L   +     L++L L      C SL +L   V   +  +     
Sbjct: 325 RLENLYLDHN-SIVTL--KLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHC 381

Query: 214 DCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKL 245
                  +     E +  + DR      L  +
Sbjct: 382 KIDYQLEHGLCCKESDKPYLDRLLQYIALTSV 413

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 37/196 (18%), Positives = 70/196 (35%), Gaps = 17/196 (8%)

Query: 1   MLNSDCQSIPKRVRHLSFVSASASRNDFSSLLS--DLRRVRTILFSINDENTSESFFTSC 58
                     K ++ L+F     + N   +  S  DL  +  +  S N   + +   +  
Sbjct: 315 KFGQFPTLKLKSLKRLTF-----TSNKGGNAFSEVDLPSLEFLDLSRN-GLSFKGCCSQS 368

Query: 59  ISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSI--CELQSLQTLI 116
              +  L+ LDL  + +  +      L+ + +LD   +  +K++        L++L  L 
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ-HSNLKQMSEFSVFLSLRNLIYLD 427

Query: 117 LRGCLKLEELPKDI-RYLVSLRMFVVTT--KQKSLQESGIACLSSLRSLIISHCWNLEYL 173
           +            I   L SL +  +     Q++        L +L  L +S C  LE L
Sbjct: 428 ISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQL 485

Query: 174 FEHI-GQLSGLRSLIL 188
                  LS L+ L +
Sbjct: 486 SPTAFNSLSSLQVLNM 501

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 47/272 (17%), Positives = 84/272 (30%), Gaps = 34/272 (12%)

Query: 65  LRVLDLDDSTIEVLPRE-IGNLKHMRY----LDLSRYCQIKKLPNSICELQSLQTLILRG 119
           L  LDL  + I+ +    +  L  M      LDLS    +  +     +   L  L LR 
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS-LNPMNFIQPGAFKEIRLHKLTLRN 209

Query: 120 C-LKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIG 178
               L  +   I+ L  L       +   L         +L     S    L  L     
Sbjct: 210 NFDSLNVMKTCIQGLAGL-------EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 179 QLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNT 238
           +L+ L          L  +     CL++  +  L+      +       G       +  
Sbjct: 263 RLAYLDY-------YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK 315

Query: 239 RTHLQKLFVSGLKQLLDLPQWLLQGST-----KTLQFLGIEDCPNFMALQG----SLKDL 289
                 L +  LK+ L         +       +L+FL +    N ++ +G    S    
Sbjct: 316 FGQFPTLKLKSLKR-LTFTSNKGGNAFSEVDLPSLEFLDLSR--NGLSFKGCCSQSDFGT 372

Query: 290 EALETLLISACRKLSSLPEDIHHLTTLKTLSI 321
            +L+ L +S    + ++  +   L  L+ L  
Sbjct: 373 TSLKYLDLSFN-GVITMSSNFLGLEQLEHLDF 403

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 40/270 (14%), Positives = 87/270 (32%), Gaps = 21/270 (7%)

Query: 63  QFLRVLDLDDSTIEVLPRE-IGNLKHMRYLDLSRYCQIKKLPNSI-CELQSLQTLILRGC 120
             L+VLDL    I+ +      +L H+  L L+    I+ L       L SLQ L+    
Sbjct: 52  PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSLQKLVAVET 110

Query: 121 LKLEELPKD-IRYLVSLRMFVVTTKQ-KSLQESGI-ACLSSLRSLIISHCWNLEYL---- 173
             L  L    I +L +L+   V     +S +     + L++L  L +S    ++ +    
Sbjct: 111 -NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTD 168

Query: 174 FEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHH 233
              + Q+  L   + +    +  +            L L +        ++ +       
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF-----DSLNVMKTCIQG 223

Query: 234 DRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTK-TLQFLGIEDCPNFM-ALQGSLKDLEA 291
                   L          L    +  L+G    T++   +     ++  +      L  
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283

Query: 292 LETLLISACRKLSSLPEDIHHLTTLKTLSI 321
           + +  + +   +  +  D  +    + L +
Sbjct: 284 VSSFSLVSV-TIERVK-DFSYNFGWQHLEL 311

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 57  SCISKSQFLRVLDLDDSTIE-VLPREIGNLKHMRYLDLSRYCQIK-KLPNSICELQSLQT 114
             +   + L  L LD + +   +P  + N  ++ ++ LS   ++  ++P  I  L++L  
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS-NNRLTGEIPKWIGRLENLAI 518

Query: 115 LILRGCLKLE-ELPKDIRYLVSLRMF 139
           L L         +P ++    SL   
Sbjct: 519 LKLSNN-SFSGNIPAELGDCRSLIWL 543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 38/215 (17%), Positives = 71/215 (33%), Gaps = 33/215 (15%)

Query: 15  HLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDST 74
            LS    +   +  SS L  L  + ++  S +  N S S F    S    L  LDL  ++
Sbjct: 56  DLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSAS----LTSLDLSRNS 111

Query: 75  IE-VLP--REIGNLKHMRYLDLSR-YCQIKKLPNSICELQSLQTLILRGCLKLE-ELPKD 129
           +   +     +G+   +++L++S          +   +L SL+ L L     +       
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVG 170

Query: 130 IRYLVSLRMFVVTTKQKSLQE--------SG---IACLSSLRSLIISHCWNLEYLFEHIG 178
                             L+         SG   ++   +L  L +S   N       +G
Sbjct: 171 WVLSDGC---------GELKHLAISGNKISGDVDVSRCVNLEFLDVSSN-NFSTGIPFLG 220

Query: 179 QLSGLRSLILVDCPSLI-SLPSAVKCLSSSETLIL 212
             S L+ L +     L      A+   +  + L +
Sbjct: 221 DCSALQHLDISGN-KLSGDFSRAISTCTELKLLNI 254

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 31/144 (21%), Positives = 51/144 (35%), Gaps = 26/144 (18%)

Query: 59  ISKSQFLRVLDLDDSTIE-VLPREIGNLKHMRYLDLSRYCQIK-KLPNSICELQSLQTLI 116
           +     L+ LD+  + +     R I     ++ L++S   Q    +P     L+SLQ L 
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS-SNQFVGPIPPLP--LKSLQYLS 275

Query: 117 LRGCLKLE-ELPKDIRY-LVSLRMFVVTTKQKSLQE--------SGIACLSSLRSLIISH 166
           L    K   E+P  +     +L           L                S L SL +S 
Sbjct: 276 LAEN-KFTGEIPDFLSGACDTLTGL-------DLSGNHFYGAVPPFFGSCSLLESLALSS 327

Query: 167 CWNL--EYLFEHIGQLSGLRSLIL 188
             N   E   + + ++ GL+ L L
Sbjct: 328 N-NFSGELPMDTLLKMRGLKVLDL 350

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 31/179 (17%), Positives = 53/179 (29%), Gaps = 15/179 (8%)

Query: 34  DLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDL 93
              +V +I  S    N   S  +S +     L  L L +S I            +  LDL
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDL 107

Query: 94  SRYCQIKKLP--NSICELQSLQTLILRGC-LKLEELPKDIRYLVSLRMFVVT----TKQK 146
           SR      +    S+     L+ L +    L           L SL +  ++    +   
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167

Query: 147 SLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDC------PSLISLPS 199
            +          L+ L IS    +    + + +   L  L +         P L    +
Sbjct: 168 VVGWVLSDGCGELKHLAISGN-KISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSA 224

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 57/333 (17%), Positives = 123/333 (36%), Gaps = 43/333 (12%)

Query: 7   QSIPKRVRHLSFVSASASRNDFSSL----LSDLRRVRTILFSIND-ENTSESFFTSCISK 61
           + IP   R L        +N   +L     +    +  +  + N         F +  + 
Sbjct: 28  EGIPTETRLLDL-----GKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN- 81

Query: 62  SQFLRVLDLDDSTIEVLPREI-GNLKHMRYLDLSRYCQIKKLPNSI-CELQSLQTLILRG 119
              LR L L  + ++++P  +   L ++  LD+S   +I  L + +  +L +L++L +  
Sbjct: 82  ---LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE-NKIVILLDYMFQDLYNLKSLEVGD 137

Query: 120 CLKLEELPKDI-RYLVSLRMFVVTTKQ-KSLQESGIACLSSLRSLIISHCWNLEYL-FEH 176
              L  +       L SL    +      S+    ++ L  L  L + H  N+  +    
Sbjct: 138 N-DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL-NINAIRDYS 195

Query: 177 IGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCK--SLNLNLNIEMEGEGSHHD 234
             +L  L+ L +   P L ++        +  +L +  C   ++       +        
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL-------- 247

Query: 235 RDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQ-GSLKDLEALE 293
                 +L+ L +S    +  +   +L    + LQ + +        ++  + + L  L 
Sbjct: 248 -----VYLRFLNLSY-NPISTIEGSMLHELLR-LQEIQLVGG-QLAVVEPYAFRGLNYLR 299

Query: 294 TLLISACRKLSSLPEDI-HHLTTLKTLSIKECP 325
            L +S   +L++L E + H +  L+TL +   P
Sbjct: 300 VLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 58/354 (16%), Positives = 114/354 (32%), Gaps = 59/354 (16%)

Query: 24  SRNDFSSL-----LSDLRRVRTILFSIND-ENTSESFFTSCISKSQFLRVLDLDDSTIEV 77
           + N   S       S+L  +  +  S N  +  + +         Q    LD+  + I+ 
Sbjct: 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF 195

Query: 78  LPREIGNLKHMRYLDLSRYCQIKKLPNSIC------ELQSLQTLILRGCLKLEELPKDI- 130
           +  +      +  L L        +  +         +  L     +    LE     I 
Sbjct: 196 IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255

Query: 131 RYLVSLRMFVVT---TKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLI 187
             L  + +       T   S       CL+++ ++ ++   +++YL +        +SL 
Sbjct: 256 EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV-SIKYLEDVPK-HFKWQSLS 313

Query: 188 LVDCPSLISLPSA----VKCLSSSETLILIDC--------KSLNLNLN-IEMEGEGSHHD 234
           ++ C  L   P+     +K L+ +     I            L+L+ N +   G  S+ D
Sbjct: 314 IIRC-QLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSD 372

Query: 235 RDNTRTHLQKLFVS------------GLKQL--LDL---------PQWLLQGSTKTLQFL 271
                  L+ L +S            GL++L  LD                   K L +L
Sbjct: 373 LGT--NSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK-LLYL 429

Query: 272 GIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDI-HHLTTLKTLSIKEC 324
            I      +   G    L +L TL ++      +   ++  + T L  L + +C
Sbjct: 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 50/270 (18%), Positives = 104/270 (38%), Gaps = 24/270 (8%)

Query: 65  LRVLDLDDSTIEVLPRE-IGNLKHMRYLDLSRYCQIKKL-PNSICELQSLQTLILRGCLK 122
            + +DL  + +++L      N   +++LDLS  C+I+ +   +   L  L  LIL G   
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLS-RCEIETIEDKAWHGLHHLSNLILTGN-P 91

Query: 123 LEELPKD-IRYLVSLRMFVVTTKQ-KSLQESGIACLSSLRSLIISHCWNLEY--LFEHIG 178
           ++         L SL   V    +  SL+   I  L +L+ L ++H   +    L  +  
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFS 150

Query: 179 QLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNT 238
            L+ L  + L    S   +    + ++ ++   L +   +NL+L++ +       D+   
Sbjct: 151 NLTNLVHVDL----SYNYI----QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ 202

Query: 239 RTHLQKLFVSGLKQLLDLPQWLLQGSTKT----LQFLGIEDCPNFMALQ-GSLKDLEAL- 292
              L +L + G     ++ +  LQ         L     +D  N    +   ++ L  + 
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262

Query: 293 -ETLLISACRKLSSLPEDIHHLTTLKTLSI 321
            +   ++     S      H L  +  +S+
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSL 292

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 9/130 (6%)

Query: 65  LRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPN--SICELQSLQTLILRGCLK 122
           LR LDL  +   ++      L+ +++LD   +  +K++    +   L+ L  L +     
Sbjct: 378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQ-HSTLKRVTEFSAFLSLEKLLYLDISYT-N 435

Query: 123 LEELPKDI-RYLVSLRMFVVT--TKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHI-G 178
            +     I   L SL    +   + + +   +  A  ++L  L +S C  LE +   +  
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFD 494

Query: 179 QLSGLRSLIL 188
            L  L+ L +
Sbjct: 495 TLHRLQLLNM 504

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 37/216 (17%), Positives = 73/216 (33%), Gaps = 24/216 (11%)

Query: 24  SRNDFSSL----LSDLRRVRTILFSIND-ENTSESFFTSCISKSQFLRVLDLDDSTIEVL 78
           SR +  ++       L  +  ++ + N  ++ S   F+   S    L  L   ++ +  L
Sbjct: 64  SRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS----LENLVAVETKLASL 119

Query: 79  PRE-IGNLKHMRYLDLSRYCQIK--KLPNSICELQSLQTLILRGCLKLEELPKDIRYLVS 135
               IG L  ++ L+++ +  I   KLP     L +L  + L     ++ +  +   L  
Sbjct: 120 ESFPIGQLITLKKLNVA-HNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVND--LQF 175

Query: 136 LRMFVVTTKQKSLQESGIACLS-------SLRSLIISHCWNLEYLFEHIGQ-LSGLRSLI 187
           LR          +  + I  +         L  L +   +N   + +   Q L+GL    
Sbjct: 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235

Query: 188 LVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLN 223
           L+           +   S  E L  +      L   
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.1 bits (112), Expect = 5e-06
 Identities = 45/279 (16%), Positives = 83/279 (29%), Gaps = 29/279 (10%)

Query: 65  LRVLDLDDSTIEVLPREI-GNLKHMRYLDLSRYCQIKKLPNSICE-LQSLQTLILRGCLK 122
              L L  + I  +       L+ ++ L+L        +       L +L+ L L    K
Sbjct: 26  TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-K 84

Query: 123 LEELPKDI-RYLVSLRMFVVTT---KQKSLQESGIACLSSLRSLIISHCWNLEYLFEH-- 176
           +  L  D  + L  L    +         L++     L +L  L +S    +  L+ H  
Sbjct: 85  IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPS 143

Query: 177 IGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRD 236
            G+L+ L+S+        +     ++ L            SL  N              +
Sbjct: 144 FGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF----SLAANSLYSRVSVDWGKCMN 199

Query: 237 NTR-THLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLE----- 290
             R   L+ L VSG              +    Q   +    + M       +++     
Sbjct: 200 PFRNMVLEILDVSGN-GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258

Query: 291 --------ALETLLISACRKLSSLPEDIHHLTTLKTLSI 321
                   ++  L +S     S        L  LK L++
Sbjct: 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 34/212 (16%), Positives = 68/212 (32%), Gaps = 28/212 (13%)

Query: 65  LRVLDLDDSTIEVLPREI-GNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKL 123
           +  +DL  + I ++  +    L+ ++ LDL     +     +I  + S+  + L G  KL
Sbjct: 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR-DNAL----TTIHFIPSIPDIFLSGN-KL 393

Query: 124 EELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEH--IGQLS 181
             LPK       + +     +   +    +  +  L+ LI++               +  
Sbjct: 394 VTLPKINLTANLIHLSENRLENLDIL-YFLLRVPHLQILILNQN-RFSSCSGDQTPSENP 451

Query: 182 GLRSLIL-----VDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRD 236
            L  L L                  + LS  + L L      +L   +            
Sbjct: 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL-------- 503

Query: 237 NTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTL 268
              T L+ L ++  + L  L    L  + + L
Sbjct: 504 ---TALRGLSLNSNR-LTVLSHNDLPANLEIL 531

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.8 bits (111), Expect = 6e-06
 Identities = 21/163 (12%), Positives = 51/163 (31%), Gaps = 13/163 (7%)

Query: 65  LRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRG----C 120
           L+ LDL  + +  +  E  +   + ++ L    ++  +  ++   Q+L+   LRG    C
Sbjct: 193 LKTLDLSSNKLAFMGPEFQSAAGVTWISLR-NNKLVLIEKALRFSQNLEHFDLRGNGFHC 251

Query: 121 LKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQL 180
             L +     + + ++    V    K L        +             +       +L
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTV----KKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL 307

Query: 181 SGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLN 223
             L+        +L+S   +       E       + ++    
Sbjct: 308 IALKRKEH----ALLSGQGSETERLECERENQARQREIDALKE 346

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.8 bits (111), Expect = 7e-06
 Identities = 37/260 (14%), Positives = 91/260 (35%), Gaps = 30/260 (11%)

Query: 65  LRVLDLDDSTIEVLPREIG-NLKHMRYLDLSRYCQIKKL-PNSICELQSLQTLILRGCLK 122
            ++  + DS+++     +  +  +++ LDLS    + ++    +     L+ L L     
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLS-GNPLSQISAADLAPFTKLELLNLSSN-V 69

Query: 123 LEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSG 182
           L E   D+  L +LR   +      +QE  +    S+ +L  ++  N+  +     +  G
Sbjct: 70  LYETL-DLESLSTLRTLDLNNNY--VQE--LLVGPSIETLHAANN-NISRV--SCSRGQG 121

Query: 183 LRSLILVDCPSLISLPSAV-KCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTH 241
            +++ L +   +  L      C S  + L L     LN    +      +          
Sbjct: 122 KKNIYLANN-KITMLRDLDEGCRSRVQYLDL----KLNEIDTVNFAELAASS------DT 170

Query: 242 LQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACR 301
           L+ L +     + D+   ++      L+ L +        +    +    +  + +    
Sbjct: 171 LEHLNLQYN-FIYDVKGQVV---FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN- 224

Query: 302 KLSSLPEDIHHLTTLKTLSI 321
           KL  + + +     L+   +
Sbjct: 225 KLVLIEKALRFSQNLEHFDL 244

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 29/281 (10%), Positives = 81/281 (28%), Gaps = 33/281 (11%)

Query: 59  ISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLP-NSICELQSLQTLIL 117
           +     +  L   ++ I  +       +  + + L+   +I  L          +Q L L
Sbjct: 95  LLVGPSIETLHAANNNISRVS--CSRGQGKKNIYLA-NNKITMLRDLDEGCRSRVQYLDL 151

Query: 118 RGCLKLEELPKD--IRYLVSLRMFVVTTKQ-KSLQESGIACLSSLRSLIISHCWNLEYLF 174
           +   +++ +          +L    +       ++       + L++L +S    L ++ 
Sbjct: 152 KLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSN-KLAFMG 207

Query: 175 EHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLIL----IDC-------------KS 217
                 +G+  + L +   L+ +  A++   + E   L      C             ++
Sbjct: 208 PEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266

Query: 218 LNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCP 277
           +      ++ G+        T  H        L         L+    K    L  +   
Sbjct: 267 VAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA--PFADRLIALKRKEHALLSGQGSE 324

Query: 278 NFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKT 318
               L+   ++      +     +   ++ + +      K 
Sbjct: 325 -TERLECERENQARQREIDALKEQ-YRTVIDQVTLRKQAKI 363

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 46.3 bits (110), Expect = 8e-06
 Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 9/153 (5%)

Query: 65  LRVLDLDDSTIEVLPREI-GNLKHMRYLDLSRYCQIKKLP-NSICELQSLQTLILRGCLK 122
           L+ L L ++ IE +P      +  +R LDL    ++  +   +   L +L+ L L  C  
Sbjct: 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-N 196

Query: 123 LEELPKDIRYLVSLRMFVVTTKQ-KSLQESGIACLSSLRSLIISHCWNLEYLFEH-IGQL 180
           L E+P ++  L+ L    ++     +++      L  L+ L +     ++ +  +    L
Sbjct: 197 LREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNL 254

Query: 181 SGLRSLILVDCPSLISLP-SAVKCLSSSETLIL 212
             L  + L    +L  LP      L   E + L
Sbjct: 255 QSLVEINLAHN-NLTLLPHDLFTPLHHLERIHL 286

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 31/151 (20%), Positives = 57/151 (37%), Gaps = 29/151 (19%)

Query: 65  LRVLDLDDSTIEVLPREI-GNLKHMRYLDLSRYCQIKKLPNSI-CELQSLQTLILRGCLK 122
           L  L+L D+ +  +P      L  ++ L L     I+ +P+     + SL+ L L    +
Sbjct: 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRN-NPIESIPSYAFNRIPSLRRLDLGELKR 172

Query: 123 LEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSG 182
           L  + +          F                LS+LR L ++ C NL  +  ++  L  
Sbjct: 173 LSYISEGA--------F--------------EGLSNLRYLNLAMC-NLREI-PNLTPLIK 208

Query: 183 LRSLILVDCPSLISLPS-AVKCLSSSETLIL 212
           L  L L     L ++   + + L   + L +
Sbjct: 209 LDELDLSGNH-LSAIRPGSFQGLMHLQKLWM 238

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.4 bits (110), Expect = 9e-06
 Identities = 45/265 (16%), Positives = 95/265 (35%), Gaps = 11/265 (4%)

Query: 65  LRVLDLDDSTIEVLPR--EIGNLKHMRYLDLSRYCQIKKLP-NSICELQSLQ-TLILRGC 120
           L+ LDL  +  + LP   E GN+  +++L LS    ++K     I  L   +  L+L   
Sbjct: 92  LKHLDLSFNAFDALPICKEFGNMSQLKFLGLST-THLEKSSVLPIAHLNISKVLLVLGET 150

Query: 121 LKLEELPKDIRYLVSLRMFVVTTKQ---KSLQESGIACLSSLRSLIISHCWNLEYLFEHI 177
              +E P+ ++   +  + +V         + +  +  +++L    I            +
Sbjct: 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210

Query: 178 GQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDN 237
             L+ L++   +   +L ++ +          L+           N++++G+    D D 
Sbjct: 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY 270

Query: 238 TRTHLQKLFVSGLK-QLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLL 296
           + T L+ L +  +   +   PQ  +      +           M        +     L 
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330

Query: 297 ISACRKLSSLPEDI-HHLTTLKTLS 320
            S    L+    +   HLT L+TL 
Sbjct: 331 FSNN-LLTDTVFENCGHLTELETLI 354

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 27/153 (17%), Positives = 63/153 (41%), Gaps = 11/153 (7%)

Query: 65  LRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLE 124
                L  +++  +      L+ +  L ++   ++  +   I  L +L+ L L G  ++ 
Sbjct: 24  GIRAVLQKASVTDVV-TQEELESITKLVVA-GEKVASIQG-IEYLTNLEYLNLNGN-QIT 79

Query: 125 ELPKDIRYLVSLRMFVVT-TKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGL 183
           ++   +  LV L    +   K   +  S +  L++LR L ++   N+  +   +  L+ +
Sbjct: 80  DIS-PLSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNED-NISDI-SPLANLTKM 134

Query: 184 RSLILVDCPSLISLPSAVKCLSSSETLILIDCK 216
            SL L      +S  S +  ++    L + + K
Sbjct: 135 YSLNLGAN-HNLSDLSPLSNMTGLNYLTVTESK 166

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 47/262 (17%), Positives = 96/262 (36%), Gaps = 30/262 (11%)

Query: 65  LRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLE 124
           L  L +  + I  +   + NL ++R L L+    I  +   +  L  + +L L       
Sbjct: 90  LTNLYIGTNKITDIS-ALQNLTNLRELYLN-EDNISDISP-LANLTKMYSLNLGAN-HNL 145

Query: 125 ELPKDIRYLVSLRM-FVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGL 183
                +  +  L    V  +K K +  + IA L+ L SL +++   +E +   +  L+ L
Sbjct: 146 SDLSPLSNMTGLNYLTVTESKVKDV--TPIANLTDLYSLSLNYN-QIEDI-SPLASLTSL 201

Query: 184 RSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQ 243
                      I+  + V  ++   +L       +  N   ++    +        + L 
Sbjct: 202 HYFTAYVNQ--ITDITPVANMTRLNSL------KIGNNKITDLSPLANL-------SQLT 246

Query: 244 KLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKL 303
            L +    Q+ D+           L+ L +    N ++    L +L  L +L ++  +  
Sbjct: 247 WLEIGT-NQISDINAV---KDLTKLKMLNVGS--NQISDISVLNNLSQLNSLFLNNNQLG 300

Query: 304 SSLPEDIHHLTTLKTLSIKECP 325
           +   E I  LT L TL + +  
Sbjct: 301 NEDMEVIGGLTNLTTLFLSQNH 322

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.1 bits (106), Expect = 2e-05
 Identities = 17/114 (14%), Positives = 43/114 (37%), Gaps = 12/114 (10%)

Query: 63  QFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLK 122
             +  LDL  + +  LP  +  L+ +  L  S    ++ +   +  L  LQ L+L    +
Sbjct: 463 LLVTHLDLSHNRLRALPPALAALRCLEVLQAS-DNALENVDG-VANLPRLQELLLCNN-R 519

Query: 123 LEELP--KDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLF 174
           L++    + +     L +        +LQ + +     ++  +     ++  + 
Sbjct: 520 LQQSAAIQPLVSCPRLVLL-------NLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 9/153 (5%)

Query: 65  LRVLDLDDSTIEVLPREI-GNLKHMRYLDLSRYCQIKKLPNSI-CELQSLQTLILRGCLK 122
           LR L L ++ IE +P      +  +  LDL    +++ +       L +L+ L L  C  
Sbjct: 149 LRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-N 207

Query: 123 LEELPKDIRYLVSLRMFVVTTKQ-KSLQESGIACLSSLRSLIISHCWNLEYLFEH-IGQL 180
           ++++P ++  LV L    ++      ++      LSSL+ L + +   +  +  +    L
Sbjct: 208 IKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGL 265

Query: 181 SGLRSLILVDCPSLISLP-SAVKCLSSSETLIL 212
           + L  L L    +L SLP      L     L L
Sbjct: 266 ASLVELNLAHN-NLSSLPHDLFTPLRYLVELHL 297

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 27/126 (21%)

Query: 65  LRVLDLDDSTIEVLPREI-GNLKHMRYLDLSRYCQIKKLPNSI-CELQSLQTLILRGCLK 122
           L  L+L D+ + V+P      L  +R L L     I+ +P+     + SL  L L    K
Sbjct: 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRN-NPIESIPSYAFNRVPSLMRLDLGELKK 183

Query: 123 LEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSG 182
           LE + +          F                L +L+ L +  C N++ +  ++  L G
Sbjct: 184 LEYISEG--------AF--------------EGLFNLKYLNLGMC-NIKDM-PNLTPLVG 219

Query: 183 LRSLIL 188
           L  L +
Sbjct: 220 LEELEM 225

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 31/162 (19%), Positives = 61/162 (37%), Gaps = 8/162 (4%)

Query: 32  LSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYL 91
             DL  +  +  S N   + +   +     +  L+ LDL  + +  +      L+ + +L
Sbjct: 343 EVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 401

Query: 92  DLSRYCQIKKL--PNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVT--TKQKS 147
           D   +  +K++   +    L++L  L +               L SL +  +   + Q++
Sbjct: 402 DFQ-HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 148 LQESGIACLSSLRSLIISHCWNLEYLFEH-IGQLSGLRSLIL 188
                   L +L  L +S C  LE L       LS L+ L +
Sbjct: 461 FLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNM 501

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 52/316 (16%), Positives = 95/316 (30%), Gaps = 37/316 (11%)

Query: 24  SRNDFSSL-----LSDLRRVRTILFSIND-ENTSESFFTSCISKSQFLRVLDLDDSTIEV 77
           + N   S       S+L  +  +  S N  ++   +              LDL  + +  
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 78  LPREIGNLKHMRYLDLSR-YCQIKKLPNSICELQSLQTLIL-----RGCLKLEELPKD-I 130
           +         +  L L   +  +  +   I  L  L+   L     R    LE+  K  +
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 131 RYLVSLRMFVVTTKQKSLQESGI----ACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSL 186
             L +L +              I     CL+++ S  +     +E + +      G + L
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV-TIERVKD-FSYNFGWQHL 309

Query: 187 ILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLF 246
            LV+C      P+    L S + L     K  N    +++               L+ L 
Sbjct: 310 ELVNC-KFGQFPT--LKLKSLKRLTFTSNKGGNAFSEVDL-------------PSLEFLD 353

Query: 247 VSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSL 306
           +S                T +L++L +      + +  +   LE LE L           
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMS 412

Query: 307 PEDI-HHLTTLKTLSI 321
              +   L  L  L I
Sbjct: 413 EFSVFLSLRNLIYLDI 428

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 55/270 (20%), Positives = 95/270 (35%), Gaps = 47/270 (17%)

Query: 65  LRVLDLDDSTIEVL-PREIGNLKHMRYLDLSRYCQIKKL-PNSICELQSLQTLILRGCLK 122
           L+VLDL    I+ +      +L H+  L L+    I+ L   +   L SLQ L+      
Sbjct: 54  LQVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSLQKLVAVET-- 110

Query: 123 LEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLF--EHIGQL 180
                       +L          SL+   I  L +L+ L ++H   ++     E+   L
Sbjct: 111 ------------NL---------ASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNL 148

Query: 181 SGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLN-IEMEGEGSHHDRDNTR 239
           + L  L L          + ++ L     L L    SL+L+LN +     G+  +     
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL----SLDLSLNPMNFIQPGAFKE----- 199

Query: 240 THLQKLFVSGLKQLLDLPQWLLQGSTKT----LQFLGIEDCPNFMALQ----GSLKDLEA 291
             L KL +      L++ +  +QG        L      +  N           L +L  
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 292 LETLLISACRKLSSLPEDIHHLTTLKTLSI 321
            E  L      L  + +  + LT + + S+
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 29/163 (17%)

Query: 56  TSCISKSQF--LRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQ 113
           T+ I+++Q   L  + L +  +  L   I    +++ L ++           I  L +L+
Sbjct: 35  TANITEAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTIN-NIHATNYNP-ISGLSNLE 91

Query: 114 TLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYL 173
            L + G                           S +   ++ L+SL  L ISH  + + +
Sbjct: 92  RLRIMGK-----------------------DVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 174 FEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCK 216
              I  L  + S+ L      I+    +K L   ++L +    
Sbjct: 129 LTKINTLPKVNSIDLSYN-GAITDIMPLKTLPELKSLNIQFDG 170

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 52/271 (19%), Positives = 90/271 (33%), Gaps = 54/271 (19%)

Query: 65  LRVLDLDDSTIEVLPREI-GNLKHMRYLDLSRYCQIKKLPNSICE-LQSLQTLILRGCLK 122
           L+ L L  + I  +  +   +L  + +LDLS Y  +  L +S  + L SL  L L G   
Sbjct: 78  LQALVLTSNGINTIEEDSFSSLGSLEHLDLS-YNYLSNLSSSWFKPLSSLTFLNLLGN-- 134

Query: 123 LEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSG 182
                   + L    +F   TK + L+   +   + ++    +    LE L      L  
Sbjct: 135 ------PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188

Query: 183 LRSLILVDCPSLISL-----------PSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGS 231
                L    ++  L              V   SS E L L   +  +L+          
Sbjct: 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL---RDTDLD---------- 235

Query: 232 HHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEA 291
                   + L     + L +              T + + I D      +   L  +  
Sbjct: 236 ----TFHFSELSTGETNSLIKKF------------TFRNVKITDES-LFQVMKLLNQISG 278

Query: 292 LETLLISACRKLSSLPEDI-HHLTTLKTLSI 321
           L  L  S  + L S+P+ I   LT+L+ + +
Sbjct: 279 LLELEFSRNQ-LKSVPDGIFDRLTSLQKIWL 308

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 36/158 (22%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 65  LRVLDLDDSTIEVLPREI-GNLKHMRYLDLSRYCQIKKLPNSI-CELQSLQTLILRGCLK 122
           L +L L  + +  +       L  +  LDLS   Q++ +  +    L  L TL L  C  
Sbjct: 58  LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-G 116

Query: 123 LEELPKDI-RYLVSLRMFVVTTKQ-KSLQESGIACLSSLRSLIISHCWNL-----EYLFE 175
           L+EL   + R L +L+   +     ++L +     L +L  L +    N      E  F 
Sbjct: 117 LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG--NRISSVPERAFR 174

Query: 176 HIGQLSGLRSLILVDCPSLISLPSAV-KCLSSSETLIL 212
               L  L  L+L     +  +     + L    TL L
Sbjct: 175 G---LHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYL 208

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 47/221 (21%), Positives = 77/221 (34%), Gaps = 29/221 (13%)

Query: 7   QSIPKRVRHLSFVSASASRNDFSSL----LSDLRRVRTILFSIND----ENTSESFFTSC 58
             IP     L         N   SL       L ++  +  S N        S+S F   
Sbjct: 24  TGIPSSATRLEL-----ESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF--- 75

Query: 59  ISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNS--ICELQSLQTLI 116
              +  L+ LDL  + +  +      L+ + +LD      +K++        L++L  L 
Sbjct: 76  --GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH-SNLKQMSEFSVFLSLRNLIYLD 132

Query: 117 LRGCLKLEELPKDI-RYLVSLRMFVVT--TKQKSLQESGIACLSSLRSLIISHCWNLEYL 173
           +            I   L SL +  +   + Q++        L +L  L +S C  LE L
Sbjct: 133 ISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQL 190

Query: 174 FEHI-GQLSGLRSLILVDCPSLISLPSAV-KCLSSSETLIL 212
                  LS L+ L +       SL +   KCL+S + L  
Sbjct: 191 SPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDY 230

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 49/295 (16%), Positives = 99/295 (33%), Gaps = 64/295 (21%)

Query: 65  LRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILR------ 118
           L  ++  ++ +  +   + NL  +  + ++   QI  +   +  L +L  L L       
Sbjct: 70  LTQINFSNNQLTDIT-PLKNLTKLVDILMN-NNQIADITP-LANLTNLTGLTLFNNQITD 126

Query: 119 -----GCLKLEEL---------PKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLII 164
                    L  L            +  L SL+      +   L    +A L++L  L I
Sbjct: 127 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL--KPLANLTTLERLDI 184

Query: 165 SHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCK-------- 216
           S    +  +   + +L+ L SLI  +    IS  + +  L++ + L L   +        
Sbjct: 185 SSN-KVSDI-SVLAKLTNLESLIATNNQ--ISDITPLGILTNLDELSLNGNQLKDIGTLA 240

Query: 217 ------SLNLNLN--IEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTL 268
                  L+L  N    +             T L +L +    Q+ ++           L
Sbjct: 241 SLTNLTDLDLANNQISNLAPLSGL-------TKLTELKLGA-NQISNISPL---AGLTAL 289

Query: 269 QFLGIEDCPNFMALQG--SLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSI 321
             L + +      L+    + +L+ L  L +     +S +   +  LT L+ L  
Sbjct: 290 TNLELNENQ----LEDISPISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFF 338

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 6/112 (5%)

Query: 59  ISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILR 118
           +S    L+ L   ++ +  +   + NL ++ +L    + QI  L   +  L  +  L L 
Sbjct: 327 VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAG-HNQISDLTP-LANLTRITQLGLN 383

Query: 119 GCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNL 170
                   P + +  VS+   V       +  + I+   S     I+  WNL
Sbjct: 384 DQ-AWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT--WNL 432

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 38/223 (17%), Positives = 77/223 (34%), Gaps = 20/223 (8%)

Query: 103 PNSICELQSLQTLILRGCLKLEELPKDI-RYLVSLRMFVVTTKQKSLQESGIACLSSLRS 161
            + IC   S +  + +   K+ E+P D+ R  + LR     TK + +Q+   +    L  
Sbjct: 3   HHRICHC-SNRVFLCQE-SKVTEIPSDLPRNAIELRFV--LTKLRVIQKGAFSGFGDLEK 58

Query: 162 LIISHCWNLEYLFEHI-GQLSGLRSLILVDCPSLISLPSAV-KCLSSSETLILIDCKSLN 219
           + IS    LE +   +   L  L  + +    +L+ +     + L + + L++ +    +
Sbjct: 59  IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH 118

Query: 220 LNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNF 279
           L                        L +     +  + +    G +     L +      
Sbjct: 119 L-----------PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GI 166

Query: 280 MALQGSLKDLEALETLLISACRKLSSLPEDI-HHLTTLKTLSI 321
             +  S  +   L+ L +S    L  LP D+ H  +    L I
Sbjct: 167 QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 40.7 bits (95), Expect = 6e-04
 Identities = 51/365 (13%), Positives = 105/365 (28%), Gaps = 50/365 (13%)

Query: 11  KRVRHLSFVSASA-SRNDFSSLLSDLRRVRTI-LFSINDENTSESFFTSCISKSQFLRVL 68
           K  + L   S    S +  +++ +  R ++ + L   + ++ S  + +        L  L
Sbjct: 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSL 189

Query: 69  DL-------DDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCL 121
           ++         S +E L     NLK    L L+R   ++KL   +     L+ L   G  
Sbjct: 190 NISCLASEVSFSALERLVTRCPNLKS---LKLNRAVPLEKLATLLQRAPQLEELGTGGYT 246

Query: 122 K---------LEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNL-E 171
                     L       + L  L  F        L     +  S L +L +S+      
Sbjct: 247 AEVRPDVYSGLSVALSGCKELRCLSGFWDAVPA-YLPAVY-SVCSRLTTLNLSYATVQSY 304

Query: 172 YLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGS 231
            L + + Q   L+ L ++D      L            L +   +   +  N+ +  +G 
Sbjct: 305 DLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364

Query: 232 HHDRDNTRTHLQKL--------------FVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCP 277
                     L+ +                     +      +++        L   D  
Sbjct: 365 VSVSMGCP-KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD-- 421

Query: 278 NFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECP-------ALWER 330
             +     ++  + L  L +S             +   ++ LS+            +   
Sbjct: 422 --IGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSG 479

Query: 331 CKPLT 335
           C  L 
Sbjct: 480 CDSLR 484

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 39.1 bits (91), Expect = 7e-04
 Identities = 26/149 (17%), Positives = 52/149 (34%), Gaps = 26/149 (17%)

Query: 78  LPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLR 137
           LP    +   ++ +D +  C +    + +  LQ ++ + L  C  +E+    +  L  L 
Sbjct: 53  LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED--GCLERLSQLE 110

Query: 138 MFVVTTKQKSLQESGIACLSSLRSLIISHCWNL-EYLFEHIGQLSGLRSLILVDCPSLIS 196
                               S+  + I  C N+ +     +     L+ L L D P +  
Sbjct: 111 ----------------NLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154

Query: 197 LPSAVKCLSSSETLILIDCKSLNLNLNIE 225
               V+   +S         SL L L+++
Sbjct: 155 KEKIVQAFKTS-------LPSLELKLDLK 176

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	360
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.98
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.97
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.95
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.94
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.94
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.93
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.93
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.91
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.91
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.91
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.91
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.91
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.91
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.91
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.9
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.9
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.9
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.9
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.9
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.9
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.89
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.89
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.88
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.88
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.88
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.87
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.87
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.87
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.86
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.82
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.82
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.82
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.82
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.81
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.81
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.81
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.81
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.81
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.81
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.81
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.8
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.79
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.79
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.77
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.77
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.77
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.77
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.74
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.74
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.72
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.72
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.7
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.69
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.66
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.66
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.66
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.63
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.62
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.61
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.61
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.6
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.59
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.59
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.57
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.56
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.55
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.55
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.54
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.53
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.53
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.51
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.51
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.49
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.48
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.46
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.41
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.41
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.41
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.38
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.38
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.38
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.36
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.35
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.3
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.28
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.26
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.26
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.26
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.07
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.03
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.01
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.99
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.98
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.97
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.95
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.92
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.77
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.75
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.73
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.61
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.53
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.5
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.46
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.4
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.39
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.28
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.17
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.81
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.7
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.37
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.23
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.72

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=6.7e-33  Score=273.28  Aligned_cols=310  Identities=18%  Similarity=0.169  Sum_probs=230.3

Q ss_pred             CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhc---------------------------CC
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISK---------------------------SQ   63 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---------------------------l~   63 (360)
                      ++++.|++.+|.+.+......+.++++|++|++++|.+.   +.++..+.+                           ++
T Consensus       318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~---~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~  394 (768)
T 3rgz_A          318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS---GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN  394 (768)
T ss_dssp             TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE---ECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTC
T ss_pred             CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC---ccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccC
Confidence            557777777777765233344777777777777777652   122222222                           44


Q ss_pred             CccEEEEeCCCCc-ccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEe
Q 039007           64 FLRVLDLDDSTIE-VLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVT  142 (360)
Q Consensus        64 ~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~  142 (360)
                      .|++|++++|.++ .+|..+..+++|++|++++|...+.+|..+..+++|+.|++++|...+.+|..+..+++|+.|+++
T Consensus       395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  474 (768)
T 3rgz_A          395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD  474 (768)
T ss_dssp             CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence            5666666666655 566667777778888887775555677777778888888888777777777778888888888888


Q ss_pred             ccccc-cccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCcccc
Q 039007          143 TKQKS-LQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLN  221 (360)
Q Consensus       143 ~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  221 (360)
                      +|.+. ..+..+..+++|+.|++++|...+.+|..++.+++|++|++++|.....+|..++.+++|+.|++++|......
T Consensus       475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i  554 (768)
T 3rgz_A          475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI  554 (768)
T ss_dssp             SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred             CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence            88776 34667788888888888888776677888888888888888888877788888888889999998887644222


Q ss_pred             ccccccC-----------------------------------------------------------CCCCCCCCCCCCcc
Q 039007          222 LNIEMEG-----------------------------------------------------------EGSHHDRDNTRTHL  242 (360)
Q Consensus       222 ~~~~~~~-----------------------------------------------------------~~~~~~~~~~~~~L  242 (360)
                      +...+..                                                           .+..+.....+++|
T Consensus       555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L  634 (768)
T 3rgz_A          555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM  634 (768)
T ss_dssp             CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred             ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence            2111000                                                           01112234455688


Q ss_pred             ceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceeccc
Q 039007          243 QKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIK  322 (360)
Q Consensus       243 ~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  322 (360)
                      +.|++++|...+.+|..+  +.++.|+.|+|++|...+.+|..++++++|+.|++++|++.+.+|..+..++.|++|+++
T Consensus       635 ~~LdLs~N~l~g~ip~~l--~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls  712 (768)
T 3rgz_A          635 MFLDMSYNMLSGYIPKEI--GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS  712 (768)
T ss_dssp             CEEECCSSCCBSCCCGGG--GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred             cEEECcCCcccccCCHHH--hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence            999999999888899888  889999999999997777999999999999999999999888999999999999999998


Q ss_pred             CCh
Q 039007          323 ECP  325 (360)
Q Consensus       323 ~c~  325 (360)
                      +|+
T Consensus       713 ~N~  715 (768)
T 3rgz_A          713 NNN  715 (768)
T ss_dssp             SSE
T ss_pred             CCc
Confidence            873

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.7e-31  Score=248.28  Aligned_cols=301  Identities=17%  Similarity=0.101  Sum_probs=221.1

Q ss_pred             CCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcc-cCcCCCCCCC
Q 039007            9 IPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEV-LPREIGNLKH   87 (360)
Q Consensus         9 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~   87 (360)
                      +|++++.|++.++.+.. ..+..|.++++|++|++++|.+.  ....+..|.++++|++|++++|.+.. .|..+..+++
T Consensus        28 l~~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~~~--~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  104 (455)
T 3v47_A           28 LPAHVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPG--LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN  104 (455)
T ss_dssp             CCTTCCEEECCSSCCCE-ECTTTTSSCTTCCEEECCCCSTT--CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred             CCCccCEEEecCCccCc-CChhHhccCccccEEECcCCccc--ceECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence            78999999999999987 56778999999999999999763  23345668999999999999999985 4778999999


Q ss_pred             cCeEeccccccccccchh--hhcCCccceEeeccccCcCcCCcc-ccccccccEEEEeccccccc-cccCC---------
Q 039007           88 MRYLDLSRYCQIKKLPNS--ICELQSLQTLILRGCLKLEELPKD-IRYLVSLRMFVVTTKQKSLQ-ESGIA---------  154 (360)
Q Consensus        88 L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~-~~~~~---------  154 (360)
                      |++|++++|...+..+..  +..+++|++|++++|...+..|.. +..+++|+.|++++|.+... +..+.         
T Consensus       105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~  184 (455)
T 3v47_A          105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL  184 (455)
T ss_dssp             CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred             CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence            999999998555445544  888999999999998766666765 78999999999999987654 22222         


Q ss_pred             -------------------------CCCCCcEeeccCCCchhhhHhhhcC------------------------------
Q 039007          155 -------------------------CLSSLRSLIISHCWNLEYLFEHIGQ------------------------------  179 (360)
Q Consensus       155 -------------------------~l~~L~~L~l~~~~~~~~~~~~l~~------------------------------  179 (360)
                                               .+++|+.|++++|......+..+..                              
T Consensus       185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  264 (455)
T 3v47_A          185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP  264 (455)
T ss_dssp             EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCC
T ss_pred             cccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccC
Confidence                                     3367888888888665544443322                              


Q ss_pred             ---------CCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCc
Q 039007          180 ---------LSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGL  250 (360)
Q Consensus       180 ---------l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  250 (360)
                               .++|+.|++++|......+..++.+++|++|++++|.....           .+.....+++|+.|++++|
T Consensus       265 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------~~~~~~~l~~L~~L~Ls~N  333 (455)
T 3v47_A          265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI-----------DDNAFWGLTHLLKLNLSQN  333 (455)
T ss_dssp             CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-----------CTTTTTTCTTCCEEECCSS
T ss_pred             cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc-----------ChhHhcCcccCCEEECCCC
Confidence                     24666677766665555666677777777777777654322           1223445667888888877


Q ss_pred             cCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCCh
Q 039007          251 KQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECP  325 (360)
Q Consensus       251 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~  325 (360)
                      ......+..+  ..+++|++|++++|......|..+.++++|++|++++|++.+..+..+..+++|++|++++|+
T Consensus       334 ~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          334 FLGSIDSRMF--ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             CCCEECGGGG--TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCCcChhHh--cCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence            6544434555  677888888888875544556677778888888888877554444455677888888887764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.6e-31  Score=249.90  Aligned_cols=306  Identities=15%  Similarity=0.080  Sum_probs=254.4

Q ss_pred             ccccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CC
Q 039007            4 SDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EI   82 (360)
Q Consensus         4 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~   82 (360)
                      ..+..+|++++.|++.++.+.. .....|.++++|++|++++|.+   ....+..|.++++|++|++++|.++.+|. .+
T Consensus        25 ~ip~~~~~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  100 (477)
T 2id5_A           25 AVPEGIPTETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIV---SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF  100 (477)
T ss_dssp             SCCSCCCTTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCC---CEECTTTTTTCTTCCEEECCSSCCCSCCTTSS
T ss_pred             cCCCCCCCCCcEEECCCCccce-ECHhHccCCCCCCEEECCCCcc---CEeChhhhhCCccCCEEECCCCcCCccCcccc
Confidence            3466788999999999999988 5567899999999999999987   45556779999999999999999997776 47


Q ss_pred             CCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEecccccccc-ccCCCCCCCcE
Q 039007           83 GNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQE-SGIACLSSLRS  161 (360)
Q Consensus        83 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~  161 (360)
                      ..+++|++|++++|......+..+..+++|+.|++++|......|..+..+++|+.|++++|.+...+ ..+..+++|+.
T Consensus       101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  180 (477)
T 2id5_A          101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV  180 (477)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE
T ss_pred             cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcE
Confidence            89999999999998665556777899999999999998766666778899999999999999888764 46889999999


Q ss_pred             eeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCc
Q 039007          162 LIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTH  241 (360)
Q Consensus       162 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (360)
                      |++.+|......+..+..+++|+.|++++|.....++.......+|++|++++|......           ......+++
T Consensus       181 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-----------~~~~~~l~~  249 (477)
T 2id5_A          181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP-----------YLAVRHLVY  249 (477)
T ss_dssp             EEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC-----------HHHHTTCTT
T ss_pred             EeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC-----------HHHhcCccc
Confidence            999998765555567889999999999999888888887777789999999998643211           112456789


Q ss_pred             cceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecc
Q 039007          242 LQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSI  321 (360)
Q Consensus       242 L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  321 (360)
                      |+.|+|++|......+..+  ..+++|++|++++|......+..+.++++|+.|++++|.+....+..+..+++|++|++
T Consensus       250 L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  327 (477)
T 2id5_A          250 LRFLNLSYNPISTIEGSML--HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL  327 (477)
T ss_dssp             CCEEECCSSCCCEECTTSC--TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred             cCeeECCCCcCCccChhhc--cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence            9999999987554333344  78899999999999666666888999999999999999866555566788999999999


Q ss_pred             cCChh
Q 039007          322 KECPA  326 (360)
Q Consensus       322 ~~c~~  326 (360)
                      ++||-
T Consensus       328 ~~N~l  332 (477)
T 2id5_A          328 DSNPL  332 (477)
T ss_dssp             CSSCE
T ss_pred             cCCCc
Confidence            98863

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.98  E-value=9.8e-32  Score=264.99  Aligned_cols=326  Identities=15%  Similarity=0.122  Sum_probs=231.6

Q ss_pred             CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCc-ccCcCCCCCC-Cc
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIE-VLPREIGNLK-HM   88 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~-~L   88 (360)
                      ++++.|++.+|.+.+ .++..+..+++|++|++++|.+.  .......+.++++|++|++++|.+. .+|..+..++ +|
T Consensus       294 ~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~--~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L  370 (768)
T 3rgz_A          294 DTLTGLDLSGNHFYG-AVPPFFGSCSLLESLALSSNNFS--GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL  370 (768)
T ss_dssp             TTCSEEECCSSEEEE-CCCGGGGGCTTCCEEECCSSEEE--EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTC
T ss_pred             CcCCEEECcCCcCCC-ccchHHhcCCCccEEECCCCccc--CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCC
Confidence            789999999999887 67788999999999999999862  2333345899999999999999877 6666665554 55


Q ss_pred             CeEeccccc--------------------------cccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEe
Q 039007           89 RYLDLSRYC--------------------------QIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVT  142 (360)
Q Consensus        89 ~~L~l~~~~--------------------------~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~  142 (360)
                      ++|++++|.                          ..+.+|..+..+++|+.|++++|...+.+|..++.+++|+.|+++
T Consensus       371 ~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  450 (768)
T 3rgz_A          371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW  450 (768)
T ss_dssp             SEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred             cEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECC
Confidence            555555443                          333445555566666666666655555556666666666666666


Q ss_pred             ccccc-cccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCcccc
Q 039007          143 TKQKS-LQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLN  221 (360)
Q Consensus       143 ~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  221 (360)
                      +|.+. ..+..+..+++|+.|++++|...+.+|..+..+++|++|++++|.....+|..++.+++|++|++++|..... 
T Consensus       451 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-  529 (768)
T 3rgz_A          451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN-  529 (768)
T ss_dssp             SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE-
T ss_pred             CCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc-
Confidence            66555 2345566666666666666655555566666667777777777666556666666677777777776654321 


Q ss_pred             ccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhc---------------------------------------
Q 039007          222 LNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQ---------------------------------------  262 (360)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~---------------------------------------  262 (360)
                                .+.....+++|+.|++++|...+.+|..+..                                       
T Consensus       530 ----------~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  599 (768)
T 3rgz_A          530 ----------IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI  599 (768)
T ss_dssp             ----------CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTC
T ss_pred             ----------CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccc
Confidence                      2334556778999999888766666544311                                       


Q ss_pred             -----------------------------CCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCC
Q 039007          263 -----------------------------GSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHL  313 (360)
Q Consensus       263 -----------------------------~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  313 (360)
                                                   ..+++|++|++++|...+.+|..++.+++|+.|++++|.+.+.+|..++.+
T Consensus       600 ~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L  679 (768)
T 3rgz_A          600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL  679 (768)
T ss_dssp             CGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred             cchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC
Confidence                                         234678999999997777899999999999999999999888999999999


Q ss_pred             CccceecccCChhHHhhcCCCCCCCCccccccceeeeccccc
Q 039007          314 TTLKTLSIKECPALWERCKPLTGEDWSKIARIPRIMLDDEMT  355 (360)
Q Consensus       314 ~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  355 (360)
                      ++|++|++++|..     ....+..+..+..+..+++..|.+
T Consensus       680 ~~L~~LdLs~N~l-----~g~ip~~l~~l~~L~~L~ls~N~l  716 (768)
T 3rgz_A          680 RGLNILDLSSNKL-----DGRIPQAMSALTMLTEIDLSNNNL  716 (768)
T ss_dssp             TTCCEEECCSSCC-----EECCCGGGGGCCCCSEEECCSSEE
T ss_pred             CCCCEEECCCCcc-----cCcCChHHhCCCCCCEEECcCCcc
Confidence            9999999999942     223445566677788888877654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.97  E-value=2.2e-30  Score=249.33  Aligned_cols=140  Identities=15%  Similarity=0.096  Sum_probs=105.5

Q ss_pred             ccccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCccc-CcCC
Q 039007            4 SDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVL-PREI   82 (360)
Q Consensus         4 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~   82 (360)
                      .-+..+|++++.|++.++.+.. .....|.++++|++|++++|.+   ....+..|.++++|++|++++|.++.+ |..+
T Consensus        25 ~ip~~~~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l---~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~  100 (606)
T 3vq2_A           25 KVPDDIPSSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEI---ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF  100 (606)
T ss_dssp             SCCTTSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCC---CEECTTTTTTCTTCCEEECTTCCCCCCCTTSS
T ss_pred             cCCCCCCCCcCEEECCCCCcCE-eChhhccCCccCcEEeCCCCcc---cccCHHHhhchhhcCEeECCCCcccccChhhc
Confidence            3456688899999999999877 5566889999999999999886   445566788889999999999888855 6778


Q ss_pred             CCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcC-cCCccccccccccEEEEeccccc
Q 039007           83 GNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLE-ELPKDIRYLVSLRMFVVTTKQKS  147 (360)
Q Consensus        83 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~  147 (360)
                      .++++|++|++++|...+..+..++++++|++|++++|...+ .+|..++.+++|++|++++|.+.
T Consensus       101 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A          101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred             CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence            888888888888874433333557777777777777765543 46777777777777777666543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=1.8e-29  Score=242.98  Aligned_cols=313  Identities=17%  Similarity=0.094  Sum_probs=196.8

Q ss_pred             ccccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcc-cCcCC
Q 039007            4 SDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEV-LPREI   82 (360)
Q Consensus         4 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~   82 (360)
                      ..+..+|+.++.|++.++.+.. ..+..|.++++|++|++++|.+   ....+..|.++++|++|++++|.+.. .|..+
T Consensus        26 ~iP~~l~~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  101 (606)
T 3t6q_A           26 EIPGTLPNSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQI---YWIHEDTFQSQHRLDTLVLTANPLIFMAETAL  101 (606)
T ss_dssp             SCCTTSCTTCCEEECTTCCCSE-ECTTTSTTCTTCSEEECTTCCC---CEECTTTTTTCTTCCEEECTTCCCSEECTTTT
T ss_pred             cCcCCCCCcCcEEEccCCccCc-CChhHhccCccceEEECCCCcc---ceeChhhccCccccCeeeCCCCcccccChhhh
Confidence            4466788999999999999987 5577899999999999999987   45556779999999999999999884 46788


Q ss_pred             CCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcC-cCCccccccccccEEEEeccccccc-cccCCCCCCCc
Q 039007           83 GNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLE-ELPKDIRYLVSLRMFVVTTKQKSLQ-ESGIACLSSLR  160 (360)
Q Consensus        83 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~  160 (360)
                      ..+++|++|++++|...+..+..++.+++|++|++++|...+ ..|.. ..+++|+.|++++|.+... +..+..+++|+
T Consensus       102 ~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  180 (606)
T 3t6q_A          102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG-FPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT  180 (606)
T ss_dssp             SSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTT-CCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred             cccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccc-cCCcccCEEEcccCcccccChhhhhhhcccc
Confidence            999999999999885444335667888999999999876554 23433 3477888888877766544 33344444444


Q ss_pred             --EeeccCCCc---------------------------------------------------------------------
Q 039007          161 --SLIISHCWN---------------------------------------------------------------------  169 (360)
Q Consensus       161 --~L~l~~~~~---------------------------------------------------------------------  169 (360)
                        .|++.+|..                                                                     
T Consensus       181 ~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~  260 (606)
T 3t6q_A          181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN  260 (606)
T ss_dssp             SEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEE
T ss_pred             eeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEE
Confidence              444443321                                                                     


Q ss_pred             ------hhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccc----------cccC---CC
Q 039007          170 ------LEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNI----------EMEG---EG  230 (360)
Q Consensus       170 ------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----------~~~~---~~  230 (360)
                            ....+..++.+++|++|++++|. .+.+|+.+..+++|++|++++|.........          .+.+   ..
T Consensus       261 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  339 (606)
T 3t6q_A          261 LQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL  339 (606)
T ss_dssp             CTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC
T ss_pred             eecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc
Confidence                  11112225566777788887774 3466777777777777777776543321100          0000   00


Q ss_pred             CC-CCCCCCCCccceEEecCccCCCCc--hhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCC
Q 039007          231 SH-HDRDNTRTHLQKLFVSGLKQLLDL--PQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLP  307 (360)
Q Consensus       231 ~~-~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  307 (360)
                      .. ......+++|+.|++++|......  +..+  ..+++|++|++++|......+..+..+++|++|++++|++....+
T Consensus       340 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  417 (606)
T 3t6q_A          340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQL--RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA  417 (606)
T ss_dssp             BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT--TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred             ccchhhhhccCcCCEEECCCCccccccCcchhc--ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc
Confidence            01 112344556666666665533222  2223  455666666666654434444555555556666665555443322


Q ss_pred             -ccccCCCccceecccCC
Q 039007          308 -EDIHHLTTLKTLSIKEC  324 (360)
Q Consensus       308 -~~~~~~~~L~~L~l~~c  324 (360)
                       ..+..+++|++|++++|
T Consensus       418 ~~~~~~l~~L~~L~l~~n  435 (606)
T 3t6q_A          418 QSPFQNLHLLKVLNLSHS  435 (606)
T ss_dssp             CCTTTTCTTCCEEECTTC
T ss_pred             chhhhCcccCCEEECCCC
Confidence             22445555555555555

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.97  E-value=1.8e-29  Score=238.68  Aligned_cols=134  Identities=16%  Similarity=0.138  Sum_probs=106.9

Q ss_pred             ccccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCC
Q 039007            4 SDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIG   83 (360)
Q Consensus         4 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~   83 (360)
                      ..+..+|++++.|++.++.+.. .....|.++++|++|++++|.+   ....+..|.++++|++|++++|.++.+|..  
T Consensus        14 ~ip~~~~~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--   87 (520)
T 2z7x_B           14 HVPKDLSQKTTILNISQNYISE-LWTSDILSLSKLRILIISHNRI---QYLDISVFKFNQELEYLDLSHNKLVKISCH--   87 (520)
T ss_dssp             SCCCSCCTTCSEEECCSSCCCC-CCHHHHTTCTTCCEEECCSSCC---CEEEGGGGTTCTTCCEEECCSSCCCEEECC--
T ss_pred             cccccccccccEEECCCCcccc-cChhhccccccccEEecCCCcc---CCcChHHhhcccCCCEEecCCCceeecCcc--
Confidence            3456677899999999999987 5567899999999999999987   455577899999999999999999988876  


Q ss_pred             CCCCcCeEecccccccc-ccchhhhcCCccceEeeccccCcCcCCccccccccc--cEEEEecccc
Q 039007           84 NLKHMRYLDLSRYCQIK-KLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSL--RMFVVTTKQK  146 (360)
Q Consensus        84 ~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L--~~L~l~~~~~  146 (360)
                      .+++|++|++++|...+ .+|..++++++|++|++++|...+   ..+..+++|  +.|++++|.+
T Consensus        88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred             ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence            89999999999985544 467889999999999999875443   234444444  5555555544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=4.6e-30  Score=252.67  Aligned_cols=204  Identities=19%  Similarity=0.212  Sum_probs=164.8

Q ss_pred             CCcceEEEeeeccccccchhhhhccCccccEEEE-eccCCCCc-------------------------------------
Q 039007           10 PKRVRHLSFVSASASRNDFSSLLSDLRRVRTILF-SINDENTS-------------------------------------   51 (360)
Q Consensus        10 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~-------------------------------------   51 (360)
                      ..+|+.|+|.++.+.+ .+++.+.++++|++|++ ++|.+...                                     
T Consensus       322 ~~~V~~L~Ls~~~L~G-~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~  400 (876)
T 4ecn_A          322 NGRVTGLSLAGFGAKG-RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL  400 (876)
T ss_dssp             TSCEEEEECTTTCCEE-EECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred             CCCEEEEECccCCCCC-cCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence            4789999999999988 77889999999999999 66632100                                     


Q ss_pred             ------------------------------------ccchHHHhhcCCCccEEEEeCCCCcc------------------
Q 039007           52 ------------------------------------ESFFTSCISKSQFLRVLDLDDSTIEV------------------   77 (360)
Q Consensus        52 ------------------------------------~~~~~~~~~~l~~L~~L~l~~~~~~~------------------   77 (360)
                                                          -..+|..+.++++|++|++++|.++.                  
T Consensus       401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~  480 (876)
T 4ecn_A          401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY  480 (876)
T ss_dssp             CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             hHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence                                                00056779999999999999999886                  


Q ss_pred             cCcCCC--CCCCcCeEeccccccccccchhhhcCCccceEeecccc-CcC-cCCccccccc-------cccEEEEecccc
Q 039007           78 LPREIG--NLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCL-KLE-ELPKDIRYLV-------SLRMFVVTTKQK  146 (360)
Q Consensus        78 ~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~p~~~~~l~-------~L~~L~l~~~~~  146 (360)
                      +|..+.  ++++|++|++++|...+.+|..++++++|+.|++++|. +.+ .+|..++.++       +|+.|++++|.+
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence            899888  99999999999998888899889999999999999986 555 6777666665       899999998888


Q ss_pred             ccccc--cCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCC-CCEEeecCCcC
Q 039007          147 SLQES--GIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSS-SETLILIDCKS  217 (360)
Q Consensus       147 ~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~  217 (360)
                      ..+|.  .+.++++|+.|++++|... .+| .++.+++|+.|++++|... .+|..+..+++ |+.|++++|..
T Consensus       561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L  631 (876)
T 4ecn_A          561 EEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL  631 (876)
T ss_dssp             CBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCC
T ss_pred             CccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCC
Confidence            87777  7888888888888887544 666 6777888888888887654 67777777777 77777777653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.97  E-value=2.5e-29  Score=240.29  Aligned_cols=339  Identities=16%  Similarity=0.147  Sum_probs=209.2

Q ss_pred             ccccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC-cCC
Q 039007            4 SDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-REI   82 (360)
Q Consensus         4 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~   82 (360)
                      ..+..+|++++.|++.++.+.. .....|.++++|++|++++|.+   ....+..|.++++|++|++++|.++.++ ..+
T Consensus        21 ~ip~~l~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i---~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~   96 (570)
T 2z63_A           21 KIPDNLPFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTLILTGNPIQSLALGAF   96 (570)
T ss_dssp             SCCSSSCSSCCEEECCSCCCCE-ECTTTTTTCSSCCEEECTTCCC---CEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred             ccCCCccccccEEEccCCccCc-cChhHhhCCCCceEEECCCCcC---CccCcccccCchhCCEEeCcCCcCCccCHhhh
Confidence            3456788899999999998877 5556788899999999998876   3444556778888888888888777544 456


Q ss_pred             CCCCCcCeEeccccccccccch-hhhcCCccceEeeccccCcC-cCCccccccccccEEEEecccccccc-c--------
Q 039007           83 GNLKHMRYLDLSRYCQIKKLPN-SICELQSLQTLILRGCLKLE-ELPKDIRYLVSLRMFVVTTKQKSLQE-S--------  151 (360)
Q Consensus        83 ~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~-~--------  151 (360)
                      ..+++|++|++++| .+..++. .++++++|++|++++|.... .+|..++.+++|++|++++|.+...+ .        
T Consensus        97 ~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  175 (570)
T 2z63_A           97 SGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  175 (570)
T ss_dssp             TTCTTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred             cCcccccccccccc-ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence            66777777777665 3333332 35566666666666654333 34555556666666655554332210 0        


Q ss_pred             --------------------------------------------------------------------------------
Q 039007          152 --------------------------------------------------------------------------------  151 (360)
Q Consensus       152 --------------------------------------------------------------------------------  151 (360)
                                                                                                      
T Consensus       176 ~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~  255 (570)
T 2z63_A          176 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC  255 (570)
T ss_dssp             TTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGG
T ss_pred             chhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccc
Confidence                                                                                            


Q ss_pred             ---------------------cCCCCCCCcEeeccCCCchhhhHhhh---------------------------------
Q 039007          152 ---------------------GIACLSSLRSLIISHCWNLEYLFEHI---------------------------------  177 (360)
Q Consensus       152 ---------------------~~~~l~~L~~L~l~~~~~~~~~~~~l---------------------------------  177 (360)
                                           .+..+++|+.|++.+|.. +.+|..+                                 
T Consensus       256 ~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l-~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~  334 (570)
T 2z63_A          256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS  334 (570)
T ss_dssp             GSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE-CSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEES
T ss_pred             ccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc-hhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcC
Confidence                                 011122333333322211 0111000                                 


Q ss_pred             ---------cCCCCccEEEeccCCCCcc--cCcccCCCCCCCEEeecCCcCccccccc---------cccC---CC-CCC
Q 039007          178 ---------GQLSGLRSLILVDCPSLIS--LPSAVKCLSSSETLILIDCKSLNLNLNI---------EMEG---EG-SHH  233 (360)
Q Consensus       178 ---------~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~---------~~~~---~~-~~~  233 (360)
                               ..+++|+.|++++|.....  .+..+..+++|++|++++|.........         .+.+   .. ...
T Consensus       335 n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  414 (570)
T 2z63_A          335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF  414 (570)
T ss_dssp             CBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTS
T ss_pred             CccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccch
Confidence                     2445666666666543221  1344555666666666665432211100         0000   00 112


Q ss_pred             CCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCc-ccccccccCccccccccccccccccCCCccccC
Q 039007          234 DRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNF-MALQGSLKDLEALETLLISACRKLSSLPEDIHH  312 (360)
Q Consensus       234 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  312 (360)
                      .....+++|+.|++++|......+..+  ..+++|++|++++|... ..+|..+..+++|++|++++|++.+..|..+..
T Consensus       415 ~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  492 (570)
T 2z63_A          415 SVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS  492 (570)
T ss_dssp             CTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             hhhhcCCCCCEEeCcCCcccccchhhh--hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhc
Confidence            345567789999999887666666666  78889999999998655 367888889999999999999877666788888


Q ss_pred             CCccceecccCChhHHhhcCCCCCCCCccccccceeeeccccc
Q 039007          313 LTTLKTLSIKECPALWERCKPLTGEDWSKIARIPRIMLDDEMT  355 (360)
Q Consensus       313 ~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  355 (360)
                      +++|++|++++|. +    .......+..+.+++.+++.++.+
T Consensus       493 l~~L~~L~l~~n~-l----~~~~~~~~~~l~~L~~L~l~~N~~  530 (570)
T 2z63_A          493 LSSLQVLNMASNQ-L----KSVPDGIFDRLTSLQKIWLHTNPW  530 (570)
T ss_dssp             CTTCCEEECCSSC-C----SCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ccCCCEEeCCCCc-C----CCCCHHHhhcccCCcEEEecCCcc
Confidence            8999999999884 2    222333455667788888877765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=1e-29  Score=245.34  Aligned_cols=324  Identities=13%  Similarity=0.097  Sum_probs=254.0

Q ss_pred             CcceEEEeeeccccccchhhhhccCccccEEEEeccC-CCCccc-chHHHhhcC------CCccEEEEeCCCCcccCc--
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSIND-ENTSES-FFTSCISKS------QFLRVLDLDDSTIEVLPR--   80 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~--   80 (360)
                      ++++.|++.+|.+.+ .++..+.++++|++|++++|. +   .+ .+|..+..+      ++|++|++++|.++.+|.  
T Consensus       249 ~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~~l---~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~  324 (636)
T 4eco_A          249 KDLTDVEVYNCPNLT-KLPTFLKALPEMQLINVACNRGI---SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET  324 (636)
T ss_dssp             TTCCEEEEECCTTCS-SCCTTTTTCSSCCEEECTTCTTS---CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH
T ss_pred             CCCCEEEecCCcCCc-cChHHHhcCCCCCEEECcCCCCC---ccccchHHHHhhhccccCCCCCEEECCCCcCCccCchh
Confidence            678899999999888 677889999999999999997 6   43 566667665      999999999999999998  


Q ss_pred             CCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCcccccccc-ccEEEEeccccccccccCCCCC--
Q 039007           81 EIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVS-LRMFVVTTKQKSLQESGIACLS--  157 (360)
Q Consensus        81 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~-L~~L~l~~~~~~~~~~~~~~l~--  157 (360)
                      .+..+++|++|++++|...+.+| .+..+++|+.|++++|... .+|..+..+++ |+.|++++|.+..+|..+..++  
T Consensus       325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~  402 (636)
T 4eco_A          325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVS  402 (636)
T ss_dssp             HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSS
T ss_pred             hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccC
Confidence            89999999999999986555888 7899999999999998555 89999999999 9999999999988887777655  


Q ss_pred             CCcEeeccCCCchhhhHhhhc-------CCCCccEEEeccCCCCcccCcc-cCCCCCCCEEeecCCcCccccccccccCC
Q 039007          158 SLRSLIISHCWNLEYLFEHIG-------QLSGLRSLILVDCPSLISLPSA-VKCLSSSETLILIDCKSLNLNLNIEMEGE  229 (360)
Q Consensus       158 ~L~~L~l~~~~~~~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  229 (360)
                      +|+.|++++|......|..+.       .+++|+.|++++|... .+|.. +..+++|++|++++|....... ..+.+.
T Consensus       403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~-~~~~~~  480 (636)
T 4eco_A          403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPK-NSLKDE  480 (636)
T ss_dssp             CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCS-SSSEET
T ss_pred             ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCH-HHhccc
Confidence            899999999987777777777       7789999999998655 66654 4568999999999987552211 100000


Q ss_pred             CCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCcccccccccc------ccccc
Q 039007          230 GSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLIS------ACRKL  303 (360)
Q Consensus       230 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~------~~~~~  303 (360)
                         ......+++|+.|++++|... .+|..+....+++|++|++++|. ++.+|..+..+++|++|+++      +|.+.
T Consensus       481 ---~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~  555 (636)
T 4eco_A          481 ---NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTL  555 (636)
T ss_dssp             ---TEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCC
T ss_pred             ---cccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCcccccCccc
Confidence               000122338999999998755 77776622388999999999985 44588888899999999994      46666


Q ss_pred             cCCCccccCCCccceecccCChhHHhhcCCCCCCCCccccccceeeeccccc
Q 039007          304 SSLPEDIHHLTTLKTLSIKECPALWERCKPLTGEDWSKIARIPRIMLDDEMT  355 (360)
Q Consensus       304 ~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  355 (360)
                      +.+|..+..+++|++|++++|.- . .    .+..+.  ..++.+++.++.+
T Consensus       556 ~~~p~~l~~l~~L~~L~Ls~N~l-~-~----ip~~~~--~~L~~L~Ls~N~l  599 (636)
T 4eco_A          556 REWPEGITLCPSLTQLQIGSNDI-R-K----VNEKIT--PNISVLDIKDNPN  599 (636)
T ss_dssp             CCCCTTGGGCSSCCEEECCSSCC-C-B----CCSCCC--TTCCEEECCSCTT
T ss_pred             ccChHHHhcCCCCCEEECCCCcC-C-c----cCHhHh--CcCCEEECcCCCC
Confidence            77888888899999999999864 1 1    122222  4677777777654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=2.8e-30  Score=249.19  Aligned_cols=324  Identities=11%  Similarity=0.082  Sum_probs=263.0

Q ss_pred             CcceEEEeeeccccccc-----------------hhhhhc--cCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEe
Q 039007           11 KRVRHLSFVSASASRND-----------------FSSLLS--DLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLD   71 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~   71 (360)
                      ++++.|++.++.+++ .                 ++..+.  ++++|++|++++|.+   ...+|..+.++++|++|+++
T Consensus       206 ~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l---~~~~p~~l~~l~~L~~L~Ls  281 (636)
T 4eco_A          206 TKLRQFYMGNSPFVA-ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN---LTKLPTFLKALPEMQLINVA  281 (636)
T ss_dssp             TTCCEEEEESCCCCG-GGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT---CSSCCTTTTTCSSCCEEECT
T ss_pred             cCCCEEECcCCcccc-ccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC---CccChHHHhcCCCCCEEECc
Confidence            578999999999887 3                 677777  999999999999986   45566789999999999999


Q ss_pred             CCC-Cc--ccCcCCCCC------CCcCeEeccccccccccch--hhhcCCccceEeeccccCcCcCCccccccccccEEE
Q 039007           72 DST-IE--VLPREIGNL------KHMRYLDLSRYCQIKKLPN--SICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFV  140 (360)
Q Consensus        72 ~~~-~~--~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~  140 (360)
                      +|. ++  .+|..+..+      ++|++|++++|. +..+|.  .++++++|+.|++++|...+.+| .++.+++|+.|+
T Consensus       282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~  359 (636)
T 4eco_A          282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN  359 (636)
T ss_dssp             TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE
T ss_pred             CCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE
Confidence            998 87  478777765      999999999984 458888  89999999999999987777899 899999999999


Q ss_pred             EeccccccccccCCCCCC-CcEeeccCCCchhhhHhhhcCCC--CccEEEeccCCCCcccCcccC-------CCCCCCEE
Q 039007          141 VTTKQKSLQESGIACLSS-LRSLIISHCWNLEYLFEHIGQLS--GLRSLILVDCPSLISLPSAVK-------CLSSSETL  210 (360)
Q Consensus       141 l~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L  210 (360)
                      +++|.+..++..+..+++ |+.|++++|... .+|..+..++  +|+.|++++|......|..+.       .+++|++|
T Consensus       360 L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L  438 (636)
T 4eco_A          360 LAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI  438 (636)
T ss_dssp             CCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEE
T ss_pred             CCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEE
Confidence            999999988888999999 999999998644 7777766654  899999999988777777777       77899999


Q ss_pred             eecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcC------CCCCCcEEecccCCCcccccc
Q 039007          211 ILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQG------STKTLQFLGIEDCPNFMALQG  284 (360)
Q Consensus       211 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~------~~~~L~~L~L~~~~~~~~~~~  284 (360)
                      ++++|......           ......+++|+.|++++|... .+|...+..      .+++|++|++++|. ++.+|.
T Consensus       439 ~Ls~N~l~~lp-----------~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~  505 (636)
T 4eco_A          439 NLSNNQISKFP-----------KELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSD  505 (636)
T ss_dssp             ECCSSCCCSCC-----------THHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCG
T ss_pred             ECcCCccCcCC-----------HHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCc-CCccCh
Confidence            99998644211           111234678999999998755 676654311      22399999999984 558888


Q ss_pred             ccc--CccccccccccccccccCCCccccCCCccceecccCChhHHhh-cCCCCCCCCccccccceeeeccccc
Q 039007          285 SLK--DLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPALWER-CKPLTGEDWSKIARIPRIMLDDEMT  355 (360)
Q Consensus       285 ~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~  355 (360)
                      .+.  .+++|++|++++|++.+ +|..+.++++|++|++++|+.+... .....+..+..+.+++.+++.++.+
T Consensus       506 ~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          506 DFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             hhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence            886  99999999999999765 8988999999999999877533222 2333455666778888998888776

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.97  E-value=7.1e-29  Score=236.61  Aligned_cols=133  Identities=20%  Similarity=0.119  Sum_probs=105.4

Q ss_pred             cccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCC
Q 039007            5 DCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGN   84 (360)
Q Consensus         5 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~   84 (360)
                      -+..+|++++.|++.+|.+.. .....|.++++|++|++++|.+   ....+..|.++++|++|++++|.++.+|..  .
T Consensus        46 ip~~~~~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~  119 (562)
T 3a79_B           46 VPKDLPPRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRI---RSLDFHVFLFNQDLEYLDVSHNRLQNISCC--P  119 (562)
T ss_dssp             CCTTSCTTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCC---CEECTTTTTTCTTCCEEECTTSCCCEECSC--C
T ss_pred             CCCCCCCCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCC---CcCCHHHhCCCCCCCEEECCCCcCCccCcc--c
Confidence            455678899999999999987 5567899999999999999987   455567799999999999999999988877  8


Q ss_pred             CCCcCeEecccccccc-ccchhhhcCCccceEeeccccCcCcCCccccccccc--cEEEEecccc
Q 039007           85 LKHMRYLDLSRYCQIK-KLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSL--RMFVVTTKQK  146 (360)
Q Consensus        85 l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L--~~L~l~~~~~  146 (360)
                      +++|++|++++|...+ ..|..++++++|++|++++|.....   .+..+++|  +.|++++|.+
T Consensus       120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred             cccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence            9999999999985443 2357899999999999998755432   23334444  6666666544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=1.2e-28  Score=230.56  Aligned_cols=316  Identities=17%  Similarity=0.159  Sum_probs=250.1

Q ss_pred             eEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCccc-CcCCCCCCCcCeEe
Q 039007           14 RHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVL-PREIGNLKHMRYLD   92 (360)
Q Consensus        14 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~   92 (360)
                      +.++..++.+..  ++..+  .+++++|++++|.+   ....+..|.++++|++|++++|.++.+ |..+..+++|++|+
T Consensus        14 ~~v~c~~~~l~~--ip~~~--~~~l~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~   86 (477)
T 2id5_A           14 RAVLCHRKRFVA--VPEGI--PTETRLLDLGKNRI---KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLG   86 (477)
T ss_dssp             TEEECCSCCCSS--CCSCC--CTTCSEEECCSSCC---CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CEEEeCCCCcCc--CCCCC--CCCCcEEECCCCcc---ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEE
Confidence            456666666554  33333  35899999999997   445566799999999999999999855 77899999999999


Q ss_pred             ccccccccccch-hhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccc-cccCCCCCCCcEeeccCCCch
Q 039007           93 LSRYCQIKKLPN-SICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQ-ESGIACLSSLRSLIISHCWNL  170 (360)
Q Consensus        93 l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~  170 (360)
                      +++| .+..+|. .+.++++|++|++++|......|..+..+++|+.|++++|.+... +..+..+++|+.|++.+|...
T Consensus        87 L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  165 (477)
T 2id5_A           87 LRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT  165 (477)
T ss_dssp             CCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred             CCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence            9988 4566664 578999999999999877766777899999999999999988765 467899999999999998665


Q ss_pred             hhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCc
Q 039007          171 EYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGL  250 (360)
Q Consensus       171 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  250 (360)
                      ...+..+..+++|+.|++++|......+..+..+++|+.|++++|.......           .......+|+.|++++|
T Consensus       166 ~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----------~~~~~~~~L~~L~l~~n  234 (477)
T 2id5_A          166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT-----------PNCLYGLNLTSLSITHC  234 (477)
T ss_dssp             SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC-----------TTTTTTCCCSEEEEESS
T ss_pred             ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC-----------cccccCccccEEECcCC
Confidence            5555678899999999999997766556678899999999999987655432           12233348999999998


Q ss_pred             cCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCChhHHhh
Q 039007          251 KQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPALWER  330 (360)
Q Consensus       251 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~  330 (360)
                      ... .++...+ ..+++|++|++++|......+..+.++++|+.|++++|.+....+..+..+++|++|++++|.-    
T Consensus       235 ~l~-~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l----  308 (477)
T 2id5_A          235 NLT-AVPYLAV-RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL----  308 (477)
T ss_dssp             CCC-SCCHHHH-TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCC----
T ss_pred             ccc-ccCHHHh-cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcC----
Confidence            744 5654332 7899999999999965555566789999999999999998777788899999999999999932    


Q ss_pred             cCCCCCCCCccccccceeeeccccc
Q 039007          331 CKPLTGEDWSKIARIPRIMLDDEMT  355 (360)
Q Consensus       331 ~~~~~~~~~~~~~~l~~~~~~~~~~  355 (360)
                       .......+..+.+++.+++.+|.+
T Consensus       309 -~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          309 -TTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             -SCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             -ceeCHhHcCCCcccCEEEccCCCc
Confidence             222233345566788888877765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.96  E-value=2.4e-28  Score=235.11  Aligned_cols=210  Identities=16%  Similarity=0.143  Sum_probs=98.4

Q ss_pred             cccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCc-ccCCCCCCCE
Q 039007          131 RYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPS-AVKCLSSSET  209 (360)
Q Consensus       131 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~  209 (360)
                      +.+++|+.|++++|.+..+|..+..+++|++|++++|......+..+..+++|+.|++++|.....++. .+..+++|++
T Consensus       275 ~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  354 (606)
T 3t6q_A          275 HCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE  354 (606)
T ss_dssp             TTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred             ccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence            344455555555555554445555555555555555544333344455555555555555544333332 2555566666


Q ss_pred             EeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhh------------------------hcCCC
Q 039007          210 LILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWL------------------------LQGST  265 (360)
Q Consensus       210 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~------------------------~~~~~  265 (360)
                      |++++|.......         .......+++|+.|++++|......+..+                        + ..+
T Consensus       355 L~l~~n~l~~~~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~l  424 (606)
T 3t6q_A          355 LDLSHDDIETSDC---------CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF-QNL  424 (606)
T ss_dssp             EECCSSCCCEEEE---------STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTT-TTC
T ss_pred             EECCCCccccccC---------cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhh-hCc
Confidence            6666554332210         01223344455555555544332223333                        1 344


Q ss_pred             CCCcEEecccCCCcccccccccCccccccccccccccccC---CCccccCCCccceecccCChhHHhhcCCCCCCCCccc
Q 039007          266 KTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSS---LPEDIHHLTTLKTLSIKECPALWERCKPLTGEDWSKI  342 (360)
Q Consensus       266 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~  342 (360)
                      ++|++|++++|......+..+.++++|++|++++|++.+.   .+..+..+++|++|++++|.-     .......+..+
T Consensus       425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l-----~~~~~~~~~~l  499 (606)
T 3t6q_A          425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL-----SSIDQHAFTSL  499 (606)
T ss_dssp             TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC-----CEECTTTTTTC
T ss_pred             ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc-----CccChhhhccc
Confidence            4455555554433333344444555555555555544331   123344455555555555521     11122334455


Q ss_pred             cccceeeeccccc
Q 039007          343 ARIPRIMLDDEMT  355 (360)
Q Consensus       343 ~~l~~~~~~~~~~  355 (360)
                      .+++.+++.++.+
T Consensus       500 ~~L~~L~Ls~N~l  512 (606)
T 3t6q_A          500 KMMNHVDLSHNRL  512 (606)
T ss_dssp             TTCCEEECCSSCC
T ss_pred             cCCCEEECCCCcc
Confidence            6666677666554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=3.5e-28  Score=217.99  Aligned_cols=303  Identities=17%  Similarity=0.184  Sum_probs=235.7

Q ss_pred             CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCe
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRY   90 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~   90 (360)
                      ++++.|++.++.+..   .+.+..+++|++|++++|.+.   .. +. +..+++|++|++++|.++.++ .+..+++|++
T Consensus        44 ~~L~~L~l~~~~i~~---~~~~~~~~~L~~L~l~~n~i~---~~-~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~  114 (347)
T 4fmz_A           44 ESITKLVVAGEKVAS---IQGIEYLTNLEYLNLNGNQIT---DI-SP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE  114 (347)
T ss_dssp             TTCSEEECCSSCCCC---CTTGGGCTTCCEEECCSSCCC---CC-GG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred             ccccEEEEeCCcccc---chhhhhcCCccEEEccCCccc---cc-hh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence            678999999988876   245889999999999999864   22 22 889999999999999988764 6889999999


Q ss_pred             EeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCch
Q 039007           91 LDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNL  170 (360)
Q Consensus        91 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  170 (360)
                      |++++| .+..++. +..+++|+.|++++|.....++ .+..+++|+.|+++++.....+. +..+++|+.|++++|.. 
T Consensus       115 L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l-  189 (347)
T 4fmz_A          115 LYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI-  189 (347)
T ss_dssp             EECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCC-
T ss_pred             EECcCC-cccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcc-
Confidence            999988 5566666 8899999999999986666554 48899999999999998877643 78899999999999854 


Q ss_pred             hhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCc
Q 039007          171 EYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGL  250 (360)
Q Consensus       171 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  250 (360)
                      ..++. +..+++|+.|++++|.... ++. +..+++|++|++++|......             ....+++|+.|++++|
T Consensus       190 ~~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~~~~L~~L~l~~n~l~~~~-------------~~~~l~~L~~L~l~~n  253 (347)
T 4fmz_A          190 EDISP-LASLTSLHYFTAYVNQITD-ITP-VANMTRLNSLKIGNNKITDLS-------------PLANLSQLTWLEIGTN  253 (347)
T ss_dssp             CCCGG-GGGCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCCCG-------------GGTTCTTCCEEECCSS
T ss_pred             ccccc-ccCCCccceeecccCCCCC-Cch-hhcCCcCCEEEccCCccCCCc-------------chhcCCCCCEEECCCC
Confidence            33333 7789999999999985443 333 778899999999998644321             1556779999999998


Q ss_pred             cCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCChhHHhh
Q 039007          251 KQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPALWER  330 (360)
Q Consensus       251 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~  330 (360)
                      ... .++ .+  ..+++|++|++++| .++.++ .+..+++|++|++++|++....+..+..+++|++|++++|+- +..
T Consensus       254 ~l~-~~~-~~--~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l-~~~  326 (347)
T 4fmz_A          254 QIS-DIN-AV--KDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI-TDI  326 (347)
T ss_dssp             CCC-CCG-GG--TTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC-CCC
T ss_pred             ccC-CCh-hH--hcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc-ccc
Confidence            644 443 34  78899999999998 455554 478899999999999987777777788899999999999962 211


Q ss_pred             cCCCCCCCCccccccceeeecccccc
Q 039007          331 CKPLTGEDWSKIARIPRIMLDDEMTK  356 (360)
Q Consensus       331 ~~~~~~~~~~~~~~l~~~~~~~~~~~  356 (360)
                            ..+..+.+++.+++.++.++
T Consensus       327 ------~~~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          327 ------RPLASLSKMDSADFANQVIK  346 (347)
T ss_dssp             ------GGGGGCTTCSEESSSCC---
T ss_pred             ------cChhhhhccceeehhhhccc
Confidence                  11555677888888887764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=3.5e-29  Score=232.72  Aligned_cols=317  Identities=15%  Similarity=0.080  Sum_probs=224.6

Q ss_pred             eEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCc-cc-CcCCCCCCCcCeE
Q 039007           14 RHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIE-VL-PREIGNLKHMRYL   91 (360)
Q Consensus        14 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~-~~~~~~l~~L~~L   91 (360)
                      +.+...++++..  ++. +  .++|++|++++|.+   ....+..+.++++|++|++++|.+. .+ +..+..+++|++|
T Consensus        13 ~~~~c~~~~l~~--lp~-l--~~~l~~L~Ls~n~i---~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L   84 (455)
T 3v47_A           13 YNAICINRGLHQ--VPE-L--PAHVNYVDLSLNSI---AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL   84 (455)
T ss_dssp             TEEECCSSCCSS--CCC-C--CTTCCEEECCSSCC---CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEE
T ss_pred             cccCcCCCCccc--CCC-C--CCccCEEEecCCcc---CcCChhHhccCccccEEECcCCcccceECcccccccccCCEE
Confidence            345555555555  222 2  27899999999987   4555677999999999999999986 55 4568999999999


Q ss_pred             eccccccccccchhhhcCCccceEeeccccCcCcCCcc--ccccccccEEEEeccccccc-ccc-CCCCCCCcEeeccCC
Q 039007           92 DLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKD--IRYLVSLRMFVVTTKQKSLQ-ESG-IACLSSLRSLIISHC  167 (360)
Q Consensus        92 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~--~~~l~~L~~L~l~~~~~~~~-~~~-~~~l~~L~~L~l~~~  167 (360)
                      ++++|...+..|..+.++++|++|++++|...+.+|..  ++.+++|++|++++|.+... +.. +..+++|++|++++|
T Consensus        85 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  164 (455)
T 3v47_A           85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN  164 (455)
T ss_dssp             ECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred             eCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence            99998655556788999999999999998766545544  88999999999999998876 443 789999999999998


Q ss_pred             CchhhhHhhhcC----------------------------------CCCccEEEeccCCCCcccCcccCC---CC-----
Q 039007          168 WNLEYLFEHIGQ----------------------------------LSGLRSLILVDCPSLISLPSAVKC---LS-----  205 (360)
Q Consensus       168 ~~~~~~~~~l~~----------------------------------l~~L~~L~l~~~~~~~~~~~~~~~---~~-----  205 (360)
                      ......+..+..                                  +++|+.|++++|......+..+..   .+     
T Consensus       165 ~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L  244 (455)
T 3v47_A          165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL  244 (455)
T ss_dssp             CBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEE
T ss_pred             cccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeE
Confidence            654443433332                                  345666666666443322222111   12     


Q ss_pred             -------------------------------CCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCC
Q 039007          206 -------------------------------SSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLL  254 (360)
Q Consensus       206 -------------------------------~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  254 (360)
                                                     +|++|++++|....           ..+.....+++|+.|++++|....
T Consensus       245 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~  313 (455)
T 3v47_A          245 ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA-----------LLKSVFSHFTDLEQLTLAQNEINK  313 (455)
T ss_dssp             ECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE-----------ECTTTTTTCTTCCEEECTTSCCCE
T ss_pred             eeccccccccccchhhhccCcccccccccccCceEEEecCccccc-----------cchhhcccCCCCCEEECCCCcccc
Confidence                                           33333333332211           123335566788888888887655


Q ss_pred             CchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCChhHHhhcCCC
Q 039007          255 DLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPALWERCKPL  334 (360)
Q Consensus       255 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~  334 (360)
                      ..+..+  ..+++|++|++++|...+..+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.-     ...
T Consensus       314 ~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-----~~~  386 (455)
T 3v47_A          314 IDDNAF--WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL-----KSV  386 (455)
T ss_dssp             ECTTTT--TTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-----SCC
T ss_pred             cChhHh--cCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcc-----ccC
Confidence            445555  6788899999998855445567788889999999999987666677888889999999988842     222


Q ss_pred             CCCCCccccccceeeecccccc
Q 039007          335 TGEDWSKIARIPRIMLDDEMTK  356 (360)
Q Consensus       335 ~~~~~~~~~~l~~~~~~~~~~~  356 (360)
                      ....+..+.+++.+++.++.+.
T Consensus       387 ~~~~~~~l~~L~~L~l~~N~l~  408 (455)
T 3v47_A          387 PDGIFDRLTSLQKIWLHTNPWD  408 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBC
T ss_pred             CHhHhccCCcccEEEccCCCcc
Confidence            2333456677888888877653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.96  E-value=3.8e-28  Score=236.85  Aligned_cols=162  Identities=17%  Similarity=0.123  Sum_probs=133.1

Q ss_pred             ccccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CC
Q 039007            4 SDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EI   82 (360)
Q Consensus         4 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~   82 (360)
                      .-+..+|++++.|++.++.+.. .....|.++++|++|++++|.+   ....+..+.++++|++|++++|.++.+|. .+
T Consensus        18 ~ip~~~~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~   93 (680)
T 1ziw_A           18 QVPDDLPTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTI---SKLEPELCQKLPMLKVLNLQHNELSQLSDKTF   93 (680)
T ss_dssp             SCCSCSCTTCSEEECCSSCCCC-CCGGGGGGGTTCSEEECCSSCC---CCCCTTHHHHCTTCCEEECCSSCCCCCCTTTT
T ss_pred             ccccccCCCCcEEECCCCCCCC-cCHHHHhCCCcCcEEECCCCcc---CccCHHHHhcccCcCEEECCCCccCccChhhh
Confidence            3456688999999999999988 5666799999999999999987   45556779999999999999999998876 58


Q ss_pred             CCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccc-c--CCCCCCC
Q 039007           83 GNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQES-G--IACLSSL  159 (360)
Q Consensus        83 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~-~--~~~l~~L  159 (360)
                      ..+++|++|++++|...+..|..++++++|++|++++|...+..|..++.+++|++|++++|.+...+. .  ...+++|
T Consensus        94 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L  173 (680)
T 1ziw_A           94 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL  173 (680)
T ss_dssp             TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred             ccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccc
Confidence            999999999999985443334678999999999999987777677778899999999999988765532 2  2345778


Q ss_pred             cEeeccCCCc
Q 039007          160 RSLIISHCWN  169 (360)
Q Consensus       160 ~~L~l~~~~~  169 (360)
                      +.|++++|..
T Consensus       174 ~~L~L~~n~l  183 (680)
T 1ziw_A          174 KKLELSSNQI  183 (680)
T ss_dssp             SEEECTTCCC
T ss_pred             cEEECCCCcc
Confidence            8888887743

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=3.1e-28  Score=239.71  Aligned_cols=323  Identities=13%  Similarity=0.098  Sum_probs=248.2

Q ss_pred             CcceEEEeeeccccccchhhhhccCccccEEEEeccC-CCCccc-chHHHhhcC-------CCccEEEEeCCCCcccCc-
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSIND-ENTSES-FFTSCISKS-------QFLRVLDLDDSTIEVLPR-   80 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~-~~~~~~~~l-------~~L~~L~l~~~~~~~~~~-   80 (360)
                      ++++.|++.+|.+.+ .++..+.++++|+.|++++|. +   .. .+|..+.++       ++|++|++++|.++.+|. 
T Consensus       491 ~~L~~L~Ls~N~l~~-~iP~~l~~L~~L~~L~Ls~N~~l---sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~  566 (876)
T 4ecn_A          491 KDLTDVELYNCPNMT-QLPDFLYDLPELQSLNIACNRGI---SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS  566 (876)
T ss_dssp             TTCCEEEEESCTTCC-SCCGGGGGCSSCCEEECTTCTTS---CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred             CCCCEEECcCCCCCc-cChHHHhCCCCCCEEECcCCCCc---ccccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh
Confidence            679999999999877 677889999999999999997 5   33 455555554       499999999999999998 


Q ss_pred             -CCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCcccccccc-ccEEEEeccccccccccCCCCCC
Q 039007           81 -EIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVS-LRMFVVTTKQKSLQESGIACLSS  158 (360)
Q Consensus        81 -~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~-L~~L~l~~~~~~~~~~~~~~l~~  158 (360)
                       .+..+++|++|++++|. +..+| .++.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+..+|..+..++.
T Consensus       567 ~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~  643 (876)
T 4ecn_A          567 ASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSV  643 (876)
T ss_dssp             HHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCS
T ss_pred             hhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhcccc
Confidence             89999999999999985 45888 7899999999999998655 89989999999 99999999999888877776654


Q ss_pred             --CcEeeccCCCchhhhHh---hhc--CCCCccEEEeccCCCCcccCccc-CCCCCCCEEeecCCcCccccccccccCCC
Q 039007          159 --LRSLIISHCWNLEYLFE---HIG--QLSGLRSLILVDCPSLISLPSAV-KCLSSSETLILIDCKSLNLNLNIEMEGEG  230 (360)
Q Consensus       159 --L~~L~l~~~~~~~~~~~---~l~--~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  230 (360)
                        |+.|++++|.....+|.   .+.  .+++|+.|++++|... .+|..+ ..+++|+.|++++|....... ..+.+. 
T Consensus       644 ~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~-~~~~~~-  720 (876)
T 4ecn_A          644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPE-NSLKPK-  720 (876)
T ss_dssp             SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCT-TSSSCT-
T ss_pred             CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccCh-HHhccc-
Confidence              99999999866543332   222  3458999999998655 677655 478999999999986442111 100000 


Q ss_pred             CCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccc------ccccc
Q 039007          231 SHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISA------CRKLS  304 (360)
Q Consensus       231 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~------~~~~~  304 (360)
                        ......+++|+.|+|++|... .+|..+....+++|+.|+|++|. +..+|..+..+++|+.|++++      |.+.+
T Consensus       721 --~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~  796 (876)
T 4ecn_A          721 --DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILR  796 (876)
T ss_dssp             --TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCC
T ss_pred             --cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCcccccccc
Confidence              001223458999999998644 78877622388999999999984 555888888999999999976      66667


Q ss_pred             CCCccccCCCccceecccCChhHHhhcCCCCCCCCccccccceeeeccccc
Q 039007          305 SLPEDIHHLTTLKTLSIKECPALWERCKPLTGEDWSKIARIPRIMLDDEMT  355 (360)
Q Consensus       305 ~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  355 (360)
                      .+|..+.++++|++|++++|.- . .    .+..+.  .+++.+++.++.+
T Consensus       797 ~ip~~l~~L~~L~~L~Ls~N~L-~-~----Ip~~l~--~~L~~LdLs~N~l  839 (876)
T 4ecn_A          797 QWPTGITTCPSLIQLQIGSNDI-R-K----VDEKLT--PQLYILDIADNPN  839 (876)
T ss_dssp             CCCTTGGGCSSCCEEECCSSCC-C-B----CCSCCC--SSSCEEECCSCTT
T ss_pred             cChHHHhcCCCCCEEECCCCCC-C-c----cCHhhc--CCCCEEECCCCCC
Confidence            7888888999999999999964 2 1    122222  3677888877664

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.96  E-value=6.2e-28  Score=240.26  Aligned_cols=301  Identities=16%  Similarity=0.054  Sum_probs=217.1

Q ss_pred             CCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcc-cCcCCCCCCC
Q 039007            9 IPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEV-LPREIGNLKH   87 (360)
Q Consensus         9 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~   87 (360)
                      +|++++.|++.+|.+.. .....|.++++|++|++++|...  ....+..|.++++|++|++++|.+.. .|..+..+++
T Consensus        22 lp~~l~~LdLs~N~i~~-i~~~~~~~l~~L~~LdLs~n~~~--~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~   98 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQYTP--LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH   98 (844)
T ss_dssp             SCTTCCEEEEESCCCCE-ECSSSCSSCCSCSEEEECTTCCC--CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred             CCCCcCEEECCCCcCCc-cChhHCcccccCeEEeCCCCCCc--cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence            88999999999999987 66678999999999999999542  33336779999999999999999984 4788999999


Q ss_pred             cCeEeccccccccccchh--hhcCCccceEeeccccCcCcCC-ccccccccccEEEEeccccccc-cccCCCC--CCCcE
Q 039007           88 MRYLDLSRYCQIKKLPNS--ICELQSLQTLILRGCLKLEELP-KDIRYLVSLRMFVVTTKQKSLQ-ESGIACL--SSLRS  161 (360)
Q Consensus        88 L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l--~~L~~  161 (360)
                      |++|++++|...+..|..  +.++++|++|++++|...+..+ ..++.+++|+.|++++|.+... +..+..+  ++|+.
T Consensus        99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~  178 (844)
T 3j0a_A           99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF  178 (844)
T ss_dssp             CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred             cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence            999999998665555554  8899999999999987665444 5789999999999999987654 4555555  78999


Q ss_pred             eeccCCCchhhhHhhhcCCCC------ccEEEeccCCCCcccCcccCC--------------------------------
Q 039007          162 LIISHCWNLEYLFEHIGQLSG------LRSLILVDCPSLISLPSAVKC--------------------------------  203 (360)
Q Consensus       162 L~l~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~~~~--------------------------------  203 (360)
                      |+++.|......+..++.+++      |+.|++++|......+..+..                                
T Consensus       179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~  258 (844)
T 3j0a_A          179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN  258 (844)
T ss_dssp             CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred             EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence            999988665555555555554      899999988544433332221                                


Q ss_pred             ------CCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCC
Q 039007          204 ------LSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCP  277 (360)
Q Consensus       204 ------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  277 (360)
                            .++|+.|++++|.....           ....+..+++|+.|+|++|......+..+  ..+++|++|++++|.
T Consensus       259 ~f~~l~~~~L~~L~Ls~n~l~~~-----------~~~~~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~Ls~N~  325 (844)
T 3j0a_A          259 TFAGLARSSVRHLDLSHGFVFSL-----------NSRVFETLKDLKVLNLAYNKINKIADEAF--YGLDNLQVLNLSYNL  325 (844)
T ss_dssp             TTTTTTTSCCCEEECTTCCCCEE-----------CSCCSSSCCCCCEEEEESCCCCEECTTTT--TTCSSCCEEEEESCC
T ss_pred             hhhccccCCccEEECCCCccccc-----------ChhhhhcCCCCCEEECCCCcCCCCChHHh--cCCCCCCEEECCCCC
Confidence                  14455555555432211           12334456677777777776544444444  667777777777775


Q ss_pred             CcccccccccCccccccccccccccccCCCccccCCCccceecccCCh
Q 039007          278 NFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECP  325 (360)
Q Consensus       278 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~  325 (360)
                      .....+..+.++++|+.|++++|.+....+..+..+++|++|++++|.
T Consensus       326 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~  373 (844)
T 3j0a_A          326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA  373 (844)
T ss_dssp             CSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred             CCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence            444456667777777777777776544444556667777777777774

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=7.2e-28  Score=219.39  Aligned_cols=282  Identities=14%  Similarity=0.077  Sum_probs=166.2

Q ss_pred             CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC-cCCCCCCCcC
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-REIGNLKHMR   89 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~   89 (360)
                      ++++.|++.++.+.. .....+..+++|++|++++|.+   ....+..|..+++|++|++++|.+..++ ..+..+++|+
T Consensus        45 ~~l~~l~l~~~~l~~-l~~~~~~~l~~L~~L~L~~n~i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQI---EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             CCCSEEEEESCEESE-ECTHHHHHCCCCSEEECTTSCC---CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCceEEEecCCchhh-CChhHhcccccCcEEECCCCcc---cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence            667888888887766 4455678888899999988876   3444456888888999999888888554 4578888899


Q ss_pred             eEeccccccccccchh-hhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCC
Q 039007           90 YLDLSRYCQIKKLPNS-ICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCW  168 (360)
Q Consensus        90 ~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~  168 (360)
                      +|++++| .+..+|.. +..+++|++|++++|...+..|..+..+++|+.|++++|.+...  .+..+++|+.|++++|.
T Consensus       121 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          121 VLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNL  197 (390)
T ss_dssp             EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSC
T ss_pred             EEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeeccccc
Confidence            9999887 45566654 57888899999888765555556678888888888888877655  24556667777766653


Q ss_pred             chhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEec
Q 039007          169 NLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVS  248 (360)
Q Consensus       169 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~  248 (360)
                      ...     +...+.|+.|++++|.. ..++..  ..++|++|++++|.....             .....+++|+.|+++
T Consensus       198 l~~-----~~~~~~L~~L~l~~n~l-~~~~~~--~~~~L~~L~l~~n~l~~~-------------~~l~~l~~L~~L~Ls  256 (390)
T 3o6n_A          198 LST-----LAIPIAVEELDASHNSI-NVVRGP--VNVELTILKLQHNNLTDT-------------AWLLNYPGLVEVDLS  256 (390)
T ss_dssp             CSE-----EECCSSCSEEECCSSCC-CEEECC--CCSSCCEEECCSSCCCCC-------------GGGGGCTTCSEEECC
T ss_pred             ccc-----cCCCCcceEEECCCCee-eecccc--ccccccEEECCCCCCccc-------------HHHcCCCCccEEECC
Confidence            221     12234455555555432 222221  134455555554432211             112233444555554


Q ss_pred             CccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCC
Q 039007          249 GLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKEC  324 (360)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c  324 (360)
                      +|......+..+  ..+++|++|++++| .++.++..+..+++|++|++++|++ +.+|..+..+++|++|++++|
T Consensus       257 ~n~l~~~~~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~L~~N  328 (390)
T 3o6n_A          257 YNELEKIMYHPF--VKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHN  328 (390)
T ss_dssp             SSCCCEEESGGG--TTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSCC-CCCGGGHHHHTTCSEEECCSS
T ss_pred             CCcCCCcChhHc--cccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCcc-eecCccccccCcCCEEECCCC
Confidence            444333323333  44444555555444 2333343344444455555544432 233333444444444444444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=8.7e-28  Score=215.43  Aligned_cols=280  Identities=18%  Similarity=0.179  Sum_probs=229.3

Q ss_pred             CCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcC
Q 039007           10 PKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMR   89 (360)
Q Consensus        10 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~   89 (360)
                      .++++.|++.++.+..  +.+ +.++++|++|++++|.+..    ++ .+.++++|++|++++|.+..++. +..+++|+
T Consensus        65 ~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~----~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~  135 (347)
T 4fmz_A           65 LTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITD----IS-ALQNLTNLRELYLNEDNISDISP-LANLTKMY  135 (347)
T ss_dssp             CTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC----CG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCC
T ss_pred             cCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccC----ch-HHcCCCcCCEEECcCCcccCchh-hccCCcee
Confidence            4689999999998877  232 9999999999999998742    22 48899999999999999987765 88999999


Q ss_pred             eEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCc
Q 039007           90 YLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWN  169 (360)
Q Consensus        90 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~  169 (360)
                      +|++++|......+. +..+++|+.|++++|... .++. +..+++|+.|++++|.+...+. +..+++|+.+++.+|..
T Consensus       136 ~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l  211 (347)
T 4fmz_A          136 SLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQI  211 (347)
T ss_dssp             EEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred             EEECCCCCCcccccc-hhhCCCCcEEEecCCCcC-Cchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCC
Confidence            999999976666655 899999999999997544 4443 8899999999999999887754 88899999999999854


Q ss_pred             hhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecC
Q 039007          170 LEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSG  249 (360)
Q Consensus       170 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  249 (360)
                      ... +. +..+++|++|++++|... .++. +..+++|++|++++|.....             .....+++|+.|++++
T Consensus       212 ~~~-~~-~~~~~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~-------------~~~~~l~~L~~L~l~~  274 (347)
T 4fmz_A          212 TDI-TP-VANMTRLNSLKIGNNKIT-DLSP-LANLSQLTWLEIGTNQISDI-------------NAVKDLTKLKMLNVGS  274 (347)
T ss_dssp             CCC-GG-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCC-------------GGGTTCTTCCEEECCS
T ss_pred             CCC-ch-hhcCCcCCEEEccCCccC-CCcc-hhcCCCCCEEECCCCccCCC-------------hhHhcCCCcCEEEccC
Confidence            443 22 778999999999998543 4444 78899999999999864431             2245678999999999


Q ss_pred             ccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCCh
Q 039007          250 LKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECP  325 (360)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~  325 (360)
                      |.. ..++ .+  ..+++|++|++++|......+..+.++++|++|++++|++.+..|  +..+++|++|++++|+
T Consensus       275 n~l-~~~~-~~--~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          275 NQI-SDIS-VL--NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV  344 (347)
T ss_dssp             SCC-CCCG-GG--GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC-
T ss_pred             Ccc-CCCh-hh--cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhc
Confidence            864 4454 33  688999999999997666777889999999999999999665444  7789999999999996

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=3e-28  Score=215.07  Aligned_cols=250  Identities=18%  Similarity=0.177  Sum_probs=151.0

Q ss_pred             ccccEEEEeccCCCCccc--chHHHhhcCCCccEEEEeC-CCCc-ccCcCCCCCCCcCeEeccccccccccchhhhcCCc
Q 039007           36 RRVRTILFSINDENTSES--FFTSCISKSQFLRVLDLDD-STIE-VLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQS  111 (360)
Q Consensus        36 ~~L~~L~l~~~~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  111 (360)
                      .++++|+++++.+.   +  .++..+.++++|++|++++ +.+. .+|..+..+++|++|++++|...+.+|..+.++++
T Consensus        50 ~~l~~L~L~~~~l~---~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  126 (313)
T 1ogq_A           50 YRVNNLDLSGLNLP---KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CCEEEEEEECCCCS---SCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             ceEEEEECCCCCcc---CCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence            35666666666542   2  3344566666666666663 5554 55555666666666666665444455555666666


Q ss_pred             cceEeeccccCcCcCCccccccccccEEEEeccccc-cccccCCCCC-CCcEeeccCCCchhhhHhhhcCCCCccEEEec
Q 039007          112 LQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKS-LQESGIACLS-SLRSLIISHCWNLEYLFEHIGQLSGLRSLILV  189 (360)
Q Consensus       112 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  189 (360)
                      |++|++++|.+.+.+|..+..+++|++|++++|.+. ..+..+..++ +|+.|++++|......|..+..++ |+.|+++
T Consensus       127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls  205 (313)
T 1ogq_A          127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS  205 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred             CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence            666666665555555655666666666666666555 3344555555 566666665544444445555554 6666665


Q ss_pred             cCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCc
Q 039007          190 DCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQ  269 (360)
Q Consensus       190 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~  269 (360)
                      +|......+..+..+++|+.|++++                                   |.....++. +  ..+++|+
T Consensus       206 ~N~l~~~~~~~~~~l~~L~~L~L~~-----------------------------------N~l~~~~~~-~--~~l~~L~  247 (313)
T 1ogq_A          206 RNMLEGDASVLFGSDKNTQKIHLAK-----------------------------------NSLAFDLGK-V--GLSKNLN  247 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCS-----------------------------------SEECCBGGG-C--CCCTTCC
T ss_pred             CCcccCcCCHHHhcCCCCCEEECCC-----------------------------------CceeeecCc-c--cccCCCC
Confidence            5544444444455555555555554                                   433333333 3  5667888


Q ss_pred             EEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCChhHH
Q 039007          270 FLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPALW  328 (360)
Q Consensus       270 ~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~  328 (360)
                      +|++++|...+.+|..+..+++|++|++++|++.+.+|.. ..+++|+.+++.+|+.+.
T Consensus       248 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             EEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred             EEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence            8888887655577777888888888888888877677765 677888888888887543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=1.3e-27  Score=227.46  Aligned_cols=314  Identities=18%  Similarity=0.141  Sum_probs=216.4

Q ss_pred             cccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcC-CC
Q 039007            5 DCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPRE-IG   83 (360)
Q Consensus         5 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~   83 (360)
                      -+..++++++.|++.++.+.. ..+..|.++++|++|++++|.+   ....+..|.++++|++|++++|.+..+++. +.
T Consensus        20 ip~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~   95 (549)
T 2z81_A           20 IPSGLTAAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSSRI---NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG   95 (549)
T ss_dssp             CCSCCCTTCCEEECCSSCCCE-ECSSTTSSCTTCCEEECTTSCC---CEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred             ccccCCCCccEEECcCCccCc-cChhhhhcCCcccEEECCCCCc---CccChhhccccccCCEEECCCCccCccCHHHhc
Confidence            355677899999999999887 5567899999999999999987   455567799999999999999999977665 89


Q ss_pred             CCCCcCeEecccccccc-ccchhhhcCCccceEeeccccCcCcCC-ccccccccccEEEEecccccc-ccccCCCCCCCc
Q 039007           84 NLKHMRYLDLSRYCQIK-KLPNSICELQSLQTLILRGCLKLEELP-KDIRYLVSLRMFVVTTKQKSL-QESGIACLSSLR  160 (360)
Q Consensus        84 ~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~  160 (360)
                      .+++|++|++++|...+ ..|..++++++|++|++++|...+.+| ..+..+++|++|++++|.+.. .+..+..+++|+
T Consensus        96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  175 (549)
T 2z81_A           96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH  175 (549)
T ss_dssp             TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred             cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCc
Confidence            99999999999985443 346678999999999999987666666 578999999999999998876 467888999999


Q ss_pred             EeeccCCCchhhhHhh-hcCCCCccEEEeccCCCCccc--C-cccCCCCCCCEEeecC----------------------
Q 039007          161 SLIISHCWNLEYLFEH-IGQLSGLRSLILVDCPSLISL--P-SAVKCLSSSETLILID----------------------  214 (360)
Q Consensus       161 ~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~--~-~~~~~~~~L~~L~l~~----------------------  214 (360)
                      .|++..|.. ..++.. +..+++|+.|++++|...+..  + .....+++|+.|++.+                      
T Consensus       176 ~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~  254 (549)
T 2z81_A          176 HLTLHLSES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS  254 (549)
T ss_dssp             EEEEECSBS-TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCC
T ss_pred             eEecccCcc-cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccc
Confidence            999988754 333333 456889999999887643310  1 1122234444444433                      


Q ss_pred             ------CcCccccccc---------------------------------------------ccc--CCCCCCCCC-CCCC
Q 039007          215 ------CKSLNLNLNI---------------------------------------------EME--GEGSHHDRD-NTRT  240 (360)
Q Consensus       215 ------~~~~~~~~~~---------------------------------------------~~~--~~~~~~~~~-~~~~  240 (360)
                            |.........                                             .+.  .....+... ..++
T Consensus       255 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~  334 (549)
T 2z81_A          255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK  334 (549)
T ss_dssp             EEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCT
T ss_pred             ccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCc
Confidence                  3211100000                                             000  000000000 2355


Q ss_pred             ccceEEecCccCCCCchhhh-hcCCCCCCcEEecccCCCccccc---ccccCccccccccccccccccCCCccccCCCcc
Q 039007          241 HLQKLFVSGLKQLLDLPQWL-LQGSTKTLQFLGIEDCPNFMALQ---GSLKDLEALETLLISACRKLSSLPEDIHHLTTL  316 (360)
Q Consensus       241 ~L~~L~L~~~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L  316 (360)
                      +|+.|++++|...+.++... ....+++|++|++++|. ++.++   ..+..+++|++|++++|++. .+|..+..+++|
T Consensus       335 ~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L  412 (549)
T 2z81_A          335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM  412 (549)
T ss_dssp             TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTC
T ss_pred             cccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccc
Confidence            67777777776554443221 01566777888887773 33332   34677788888888887644 667777777778


Q ss_pred             ceecccCCh
Q 039007          317 KTLSIKECP  325 (360)
Q Consensus       317 ~~L~l~~c~  325 (360)
                      ++|++++|.
T Consensus       413 ~~L~Ls~N~  421 (549)
T 2z81_A          413 RFLNLSSTG  421 (549)
T ss_dssp             CEEECTTSC
T ss_pred             cEEECCCCC
Confidence            888887774

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=3.2e-27  Score=226.55  Aligned_cols=282  Identities=15%  Similarity=0.089  Sum_probs=166.0

Q ss_pred             CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CCCCCCCcC
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EIGNLKHMR   89 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~   89 (360)
                      .+++.+++.++.+.. .....+..+++|++|++++|.+   ....+..|..+++|++|++++|.+..+|+ .++.+++|+
T Consensus        51 ~~l~~l~l~~~~l~~-lp~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           51 NNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQI---EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             CCCSEEEESSCEESE-ECTHHHHHCCCCSEEECTTSCC---CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCceEEEeeCCCCCC-cCHHHHccCCCCcEEECCCCCC---CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence            456778888777766 5555678888888888888876   44455568888888888888888885544 468888888


Q ss_pred             eEeccccccccccchh-hhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCC
Q 039007           90 YLDLSRYCQIKKLPNS-ICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCW  168 (360)
Q Consensus        90 ~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~  168 (360)
                      +|++++| .+..+|.. ++.+++|+.|++++|.+.+..|..++.+++|+.|++++|.+...+  +..+++|+.|++++|.
T Consensus       127 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          127 VLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL  203 (597)
T ss_dssp             EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSC
T ss_pred             EEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCc
Confidence            8888887 45566544 578888888888887666656667888888888888888776652  4556677777776653


Q ss_pred             chhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEec
Q 039007          169 NLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVS  248 (360)
Q Consensus       169 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~  248 (360)
                      ...     +...+.|+.|++++|.. ..++...  .++|+.|++++|.....             .....+++|+.|+|+
T Consensus       204 l~~-----l~~~~~L~~L~ls~n~l-~~~~~~~--~~~L~~L~L~~n~l~~~-------------~~l~~l~~L~~L~Ls  262 (597)
T 3oja_B          204 LST-----LAIPIAVEELDASHNSI-NVVRGPV--NVELTILKLQHNNLTDT-------------AWLLNYPGLVEVDLS  262 (597)
T ss_dssp             CSE-----EECCTTCSEEECCSSCC-CEEECSC--CSCCCEEECCSSCCCCC-------------GGGGGCTTCSEEECC
T ss_pred             ccc-----ccCCchhheeeccCCcc-ccccccc--CCCCCEEECCCCCCCCC-------------hhhccCCCCCEEECC
Confidence            221     22334555555555432 2222111  23445555544432210             112233444455554


Q ss_pred             CccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCC
Q 039007          249 GLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKEC  324 (360)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c  324 (360)
                      +|......|..+  ..+++|++|+|++| .+..+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|
T Consensus       263 ~N~l~~~~~~~~--~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N  334 (597)
T 3oja_B          263 YNELEKIMYHPF--VKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN  334 (597)
T ss_dssp             SSCCCEEESGGG--TTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSS
T ss_pred             CCccCCCCHHHh--cCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCC
Confidence            444333333333  44444555555444 23333444444444445554444422 33433444444444444444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=9.9e-28  Score=228.18  Aligned_cols=131  Identities=13%  Similarity=0.135  Sum_probs=107.5

Q ss_pred             CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCc--ccCcCCCCCCCc
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIE--VLPREIGNLKHM   88 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L   88 (360)
                      ++++.|++.++.+.. ..+..|.++++|++|++++|.+   ....+..+.++++|++|++++|.++  ..|..+..+++|
T Consensus        50 ~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  125 (549)
T 2z81_A           50 ANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHL---SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL  125 (549)
T ss_dssp             TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCC---CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred             CcccEEECCCCCcCc-cChhhccccccCCEEECCCCcc---CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence            679999999999987 5667899999999999999987   4556677999999999999999988  456789999999


Q ss_pred             CeEeccccccccccc-hhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccc
Q 039007           89 RYLDLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQ  145 (360)
Q Consensus        89 ~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~  145 (360)
                      ++|++++|...+.+| ..+..+++|++|++++|...+..|..++.+++|+.|+++.+.
T Consensus       126 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE  183 (549)
T ss_dssp             CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred             cEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence            999999986577776 568899999999999987776677666655555555544443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=7.7e-27  Score=220.60  Aligned_cols=102  Identities=19%  Similarity=0.185  Sum_probs=81.1

Q ss_pred             CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcc--cCcCCCCCCCc
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEV--LPREIGNLKHM   88 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~l~~L   88 (360)
                      ++++.|++.+|.+.. ..+..|.++++|++|++++|.+.    .++..  .+++|++|++++|.++.  +|..++.+++|
T Consensus        45 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~----~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L  117 (520)
T 2z7x_B           45 SKLRILIISHNRIQY-LDISVFKFNQELEYLDLSHNKLV----KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQL  117 (520)
T ss_dssp             TTCCEEECCSSCCCE-EEGGGGTTCTTCCEEECCSSCCC----EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTC
T ss_pred             ccccEEecCCCccCC-cChHHhhcccCCCEEecCCCcee----ecCcc--ccCCccEEeccCCccccccchhhhccCCcc
Confidence            689999999999987 55678999999999999999874    23332  78999999999999884  67889999999


Q ss_pred             CeEeccccccccccchhhhcCCcc--ceEeeccccC
Q 039007           89 RYLDLSRYCQIKKLPNSICELQSL--QTLILRGCLK  122 (360)
Q Consensus        89 ~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~  122 (360)
                      ++|++++|....   ..+..+++|  +.|++++|..
T Consensus       118 ~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B          118 KFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred             eEEEecCcccch---hhccccccceeeEEEeecccc
Confidence            999999885432   235556666  7777777655

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=1.4e-26  Score=206.18  Aligned_cols=286  Identities=14%  Similarity=0.101  Sum_probs=193.7

Q ss_pred             cceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCccc-CcCCCCCCCcCe
Q 039007           12 RVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVL-PREIGNLKHMRY   90 (360)
Q Consensus        12 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~   90 (360)
                      +++.+++.++.+..  ++..+  .+++++|++++|.+   ....+..+.++++|++|++++|.++.+ |..+..+++|++
T Consensus        32 ~l~~l~~~~~~l~~--lp~~~--~~~l~~L~L~~n~i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (330)
T 1xku_A           32 HLRVVQCSDLGLEK--VPKDL--PPDTALLDLQNNKI---TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER  104 (330)
T ss_dssp             ETTEEECTTSCCCS--CCCSC--CTTCCEEECCSSCC---CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             CCeEEEecCCCccc--cCccC--CCCCeEEECCCCcC---CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCE
Confidence            57777777766654  22222  25788888888876   334444578888888888888888855 677888888888


Q ss_pred             EeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEecccccc---ccccCCCCCCCcEeeccCC
Q 039007           91 LDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSL---QESGIACLSSLRSLIISHC  167 (360)
Q Consensus        91 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~---~~~~~~~l~~L~~L~l~~~  167 (360)
                      |++++| .++.+|..+.  ++|++|++++|......+..+..+++|+.|++++|.+..   .+..+..+++|+.|++++|
T Consensus       105 L~Ls~n-~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n  181 (330)
T 1xku_A          105 LYLSKN-QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT  181 (330)
T ss_dssp             EECCSS-CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred             EECCCC-cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence            888877 4556665443  788888888875554444557788888888888887753   3456777888888888887


Q ss_pred             CchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEe
Q 039007          168 WNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFV  247 (360)
Q Consensus       168 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  247 (360)
                      . ++.+|..+  .++|++|++++|......+..+..+++|++|++++|......           ......+++|+.|++
T Consensus       182 ~-l~~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----------~~~~~~l~~L~~L~L  247 (330)
T 1xku_A          182 N-ITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-----------NGSLANTPHLRELHL  247 (330)
T ss_dssp             C-CCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-----------TTTGGGSTTCCEEEC
T ss_pred             c-cccCCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC-----------hhhccCCCCCCEEEC
Confidence            4 33444433  278888888888665555677888888888888887543221           112345567788888


Q ss_pred             cCccCCCCchhhhhcCCCCCCcEEecccCCCccccccccc------Ccccccccccccccccc--CCCccccCCCcccee
Q 039007          248 SGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLK------DLEALETLLISACRKLS--SLPEDIHHLTTLKTL  319 (360)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~------~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L  319 (360)
                      ++|. +..+|..+  ..+++|++|++++|......+..+.      ..+.|+.+++.+|++..  ..|..+..+++++.+
T Consensus       248 ~~N~-l~~lp~~l--~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l  324 (330)
T 1xku_A          248 NNNK-LVKVPGGL--ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV  324 (330)
T ss_dssp             CSSC-CSSCCTTT--TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGE
T ss_pred             CCCc-CccCChhh--ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEE
Confidence            7775 34666666  6778888888888743332222332      23677788888887543  334556667778888


Q ss_pred             cccCC
Q 039007          320 SIKEC  324 (360)
Q Consensus       320 ~l~~c  324 (360)
                      ++++|
T Consensus       325 ~L~~N  329 (330)
T 1xku_A          325 QLGNY  329 (330)
T ss_dssp             EC---
T ss_pred             Eeccc
Confidence            87776

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.95  E-value=1.7e-27  Score=227.48  Aligned_cols=308  Identities=17%  Similarity=0.124  Sum_probs=202.6

Q ss_pred             CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CCCCCCCcC
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EIGNLKHMR   89 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~   89 (360)
                      ++++.|++.++.+.. .....|.++++|++|++++|.+   ....+..|.++++|++|++++|.++.++. .++.+++|+
T Consensus        52 ~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  127 (570)
T 2z63_A           52 PELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPI---QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK  127 (570)
T ss_dssp             SSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCC---CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCC
T ss_pred             CCceEEECCCCcCCc-cCcccccCchhCCEEeCcCCcC---CccCHhhhcCccccccccccccccccCCCcccccccccc
Confidence            568888888887766 4456677888888888888775   33444557777777777777777765544 466777777


Q ss_pred             eEecccccccc-ccchhhhcCCccceEeeccccCcCc-------------------------------------------
Q 039007           90 YLDLSRYCQIK-KLPNSICELQSLQTLILRGCLKLEE-------------------------------------------  125 (360)
Q Consensus        90 ~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~-------------------------------------------  125 (360)
                      +|++++|.... .+|..++++++|++|++++|...+.                                           
T Consensus       128 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l  207 (570)
T 2z63_A          128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL  207 (570)
T ss_dssp             EEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEE
T ss_pred             EEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEec
Confidence            77777664333 3566666777777777665532211                                           


Q ss_pred             ------------------------------------------------------------------CCccccccccccEE
Q 039007          126 ------------------------------------------------------------------LPKDIRYLVSLRMF  139 (360)
Q Consensus       126 ------------------------------------------------------------------~p~~~~~l~~L~~L  139 (360)
                                                                                        .|..+..+++|+.|
T Consensus       208 ~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L  287 (570)
T 2z63_A          208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF  287 (570)
T ss_dssp             ESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEE
T ss_pred             ccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEE
Confidence                                                                              01112234555556


Q ss_pred             EEeccccccccccC------------------------------------------CCCCCCcEeeccCCCchhh--hHh
Q 039007          140 VVTTKQKSLQESGI------------------------------------------ACLSSLRSLIISHCWNLEY--LFE  175 (360)
Q Consensus       140 ~l~~~~~~~~~~~~------------------------------------------~~l~~L~~L~l~~~~~~~~--~~~  175 (360)
                      +++++.+...+..+                                          ..+++|+.|++++|.....  .+.
T Consensus       288 ~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  367 (570)
T 2z63_A          288 SLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ  367 (570)
T ss_dssp             EEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEH
T ss_pred             EecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccc
Confidence            65555444332221                                          3456777777777644322  245


Q ss_pred             hhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccc--------------cCCCCCCCCCCCCCc
Q 039007          176 HIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEM--------------EGEGSHHDRDNTRTH  241 (360)
Q Consensus       176 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~  241 (360)
                      .+..+++|+.|++++|... .++..+..+++|++|++++|..........+              .-....+.....+++
T Consensus       368 ~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  446 (570)
T 2z63_A          368 SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS  446 (570)
T ss_dssp             HHHTCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred             cccccCccCEEECCCCccc-cccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCc
Confidence            6677788888888877433 3333355666666666666543222110000              001113344567789


Q ss_pred             cceEEecCccCC-CCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceec
Q 039007          242 LQKLFVSGLKQL-LDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLS  320 (360)
Q Consensus       242 L~~L~L~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  320 (360)
                      |+.|++++|... ..+|..+  ..+++|++|++++|...+..|..+..+++|++|++++|++.+..+..+..+++|++|+
T Consensus       447 L~~L~l~~n~l~~~~~p~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  524 (570)
T 2z63_A          447 LEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW  524 (570)
T ss_dssp             CCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             CcEEECcCCcCccccchhhh--hcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEE
Confidence            999999999865 3566666  7899999999999966666688899999999999999987766667788999999999


Q ss_pred             ccCCh
Q 039007          321 IKECP  325 (360)
Q Consensus       321 l~~c~  325 (360)
                      +++|+
T Consensus       525 l~~N~  529 (570)
T 2z63_A          525 LHTNP  529 (570)
T ss_dssp             CCSSC
T ss_pred             ecCCc
Confidence            99986

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.95  E-value=2.2e-26  Score=224.36  Aligned_cols=105  Identities=18%  Similarity=0.174  Sum_probs=51.4

Q ss_pred             CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC-cCCCCCCCcC
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-REIGNLKHMR   89 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~   89 (360)
                      ++++.|++.++.+.. ..+..+.++++|++|++++|.+.   ...+..|.++++|++|++++|.+..++ ..+..+++|+
T Consensus        49 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~---~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  124 (680)
T 1ziw_A           49 SQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNELS---QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI  124 (680)
T ss_dssp             TTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred             CcCcEEECCCCccCc-cCHHHHhcccCcCEEECCCCccC---ccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence            356666666665555 34445556666666666665542   222233555555555555555555333 3345555555


Q ss_pred             eEeccccccccccchhhhcCCccceEeecc
Q 039007           90 YLDLSRYCQIKKLPNSICELQSLQTLILRG  119 (360)
Q Consensus        90 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  119 (360)
                      +|++++|...+..+..+.++++|++|++++
T Consensus       125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  154 (680)
T 1ziw_A          125 TLDLSHNGLSSTKLGTQVQLENLQELLLSN  154 (680)
T ss_dssp             EEECCSSCCSCCCCCSSSCCTTCCEEECCS
T ss_pred             EEECCCCcccccCchhhcccccCCEEEccC
Confidence            555554433222233333444444444433

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=5.5e-27  Score=208.89  Aligned_cols=286  Identities=14%  Similarity=0.052  Sum_probs=212.2

Q ss_pred             cceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCccc-CcCCCCCCCcCe
Q 039007           12 RVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVL-PREIGNLKHMRY   90 (360)
Q Consensus        12 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~   90 (360)
                      +++.+++.++.+..  ++..+  .++|++|++++|.+   ....+..+.++++|++|++++|.++.+ |..+..+++|++
T Consensus        34 ~l~~l~~~~~~l~~--ip~~~--~~~l~~L~l~~n~i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  106 (332)
T 2ft3_A           34 HLRVVQCSDLGLKA--VPKEI--SPDTTLLDLQNNDI---SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK  106 (332)
T ss_dssp             ETTEEECCSSCCSS--CCSCC--CTTCCEEECCSSCC---CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred             cCCEEECCCCCccc--cCCCC--CCCCeEEECCCCcC---CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence            58888888887765  33333  36899999999987   444556789999999999999999855 677999999999


Q ss_pred             EeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEecccccc---ccccCCCCCCCcEeeccCC
Q 039007           91 LDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSL---QESGIACLSSLRSLIISHC  167 (360)
Q Consensus        91 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~---~~~~~~~l~~L~~L~l~~~  167 (360)
                      |++++| .+..+|..+.  ++|++|++++|......+..+..+++|+.|++++|.+..   .+..+..+ +|+.|++++|
T Consensus       107 L~L~~n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n  182 (332)
T 2ft3_A          107 LYISKN-HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA  182 (332)
T ss_dssp             EECCSS-CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred             EECCCC-cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence            999988 5667776554  899999999985554333458899999999999998863   34566666 8999999997


Q ss_pred             CchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEe
Q 039007          168 WNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFV  247 (360)
Q Consensus       168 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  247 (360)
                      . ++.+|..+.  ++|++|++++|......+..+..+++|++|++++|......           ......+++|+.|++
T Consensus       183 ~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~-----------~~~~~~l~~L~~L~L  248 (332)
T 2ft3_A          183 K-LTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE-----------NGSLSFLPTLRELHL  248 (332)
T ss_dssp             B-CSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC-----------TTGGGGCTTCCEEEC
T ss_pred             C-CCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC-----------hhHhhCCCCCCEEEC
Confidence            5 344554433  79999999999766655677889999999999988543321           122445678899999


Q ss_pred             cCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccC------ccccccccccccccc--cCCCccccCCCcccee
Q 039007          248 SGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKD------LEALETLLISACRKL--SSLPEDIHHLTTLKTL  319 (360)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~------l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L  319 (360)
                      ++|. +..+|..+  ..+++|++|++++|......+..+..      .+.|+.|++.+|+..  ...+..+..+++|+.+
T Consensus       249 ~~N~-l~~lp~~l--~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l  325 (332)
T 2ft3_A          249 DNNK-LSRVPAGL--PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI  325 (332)
T ss_dssp             CSSC-CCBCCTTG--GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTE
T ss_pred             CCCc-CeecChhh--hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhh
Confidence            8886 44777766  67888999999988543333333433      467888999998865  3456667788889999


Q ss_pred             cccCCh
Q 039007          320 SIKECP  325 (360)
Q Consensus       320 ~l~~c~  325 (360)
                      ++++|+
T Consensus       326 ~l~~n~  331 (332)
T 2ft3_A          326 QFGNYK  331 (332)
T ss_dssp             EC----
T ss_pred             hccccc
Confidence            888875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=3e-27  Score=208.65  Aligned_cols=252  Identities=17%  Similarity=0.148  Sum_probs=209.5

Q ss_pred             CcceEEEeeecccccc-chhhhhccCccccEEEEec-cCCCCcccchHHHhhcCCCccEEEEeCCCCc-ccCcCCCCCCC
Q 039007           11 KRVRHLSFVSASASRN-DFSSLLSDLRRVRTILFSI-NDENTSESFFTSCISKSQFLRVLDLDDSTIE-VLPREIGNLKH   87 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~   87 (360)
                      .+|+.|++.++.+.+. .++..+.++++|++|++++ |.+   .+.++..+.++++|++|++++|.++ .+|..+..+++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l---~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  126 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL---VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE---ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcc---cccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence            6899999999998752 3567899999999999995 776   4456777999999999999999998 88889999999


Q ss_pred             cCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccc-cccEEEEeccccc-cccccCCCCCCCcEeecc
Q 039007           88 MRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLV-SLRMFVVTTKQKS-LQESGIACLSSLRSLIIS  165 (360)
Q Consensus        88 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~-~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~  165 (360)
                      |++|++++|...+.+|..+..+++|++|++++|.+.+.+|..+..++ +|+.|++++|.+. ..+..+..++ |+.|+++
T Consensus       127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls  205 (313)
T 1ogq_A          127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS  205 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred             CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence            99999999966668898899999999999999977778999999998 9999999999987 4567778787 9999999


Q ss_pred             CCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceE
Q 039007          166 HCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKL  245 (360)
Q Consensus       166 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  245 (360)
                      +|......+..+..+++|+.|++++|......+. +..+++|++|++++                               
T Consensus       206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~-------------------------------  253 (313)
T 1ogq_A          206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRN-------------------------------  253 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCS-------------------------------
T ss_pred             CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcC-------------------------------
Confidence            9977667888899999999999999865444333 45555555555554                               


Q ss_pred             EecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccC
Q 039007          246 FVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSS  305 (360)
Q Consensus       246 ~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  305 (360)
                          |...+.+|..+  ..+++|++|++++|...+.+|.. ..+++|+.+++.+|+.+..
T Consensus       254 ----N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          254 ----NRIYGTLPQGL--TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             ----SCCEECCCGGG--GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             ----CcccCcCChHH--hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence                44444566666  77899999999999666677775 8899999999999986654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.95  E-value=8.4e-27  Score=224.37  Aligned_cols=290  Identities=16%  Similarity=0.061  Sum_probs=236.6

Q ss_pred             ceEEEe-eeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeE
Q 039007           13 VRHLSF-VSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYL   91 (360)
Q Consensus        13 l~~L~l-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L   91 (360)
                      ++.+.+ ..+.+.+ .++. +..+++|++|+++++.+..    ++ .+..+++|++|++++|.+..+| .+ .+++|++|
T Consensus       263 l~~l~l~~~~~~~~-~~~~-~~~l~~L~~L~l~~~~~~~----l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L  333 (606)
T 3vq2_A          263 IDEFRLTYTNDFSD-DIVK-FHCLANVSAMSLAGVSIKY----LE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSL  333 (606)
T ss_dssp             EEEEEECCCTTCCG-GGGS-CGGGTTCSEEEEESCCCCC----CC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEE
T ss_pred             Hhheeccccccccc-cccc-cccCCCCCEEEecCccchh----hh-hccccccCCEEEcccccCcccc-cC-CCCcccee
Confidence            444555 3344444 3333 8899999999999998642    22 5788999999999999998888 55 99999999


Q ss_pred             eccccccccccchhhhcCCccceEeeccccCcCc--CCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCc
Q 039007           92 DLSRYCQIKKLPNSICELQSLQTLILRGCLKLEE--LPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWN  169 (360)
Q Consensus        92 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~  169 (360)
                      ++++|......  .+..+++|+.|++++|...+.  +|..+..+++|+.|++++|.+...+..+..+++|+.|++++|..
T Consensus       334 ~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l  411 (606)
T 3vq2_A          334 TLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTL  411 (606)
T ss_dssp             EEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEE
T ss_pred             eccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCcc
Confidence            99998555544  467899999999999865543  47788899999999999999888888899999999999999866


Q ss_pred             hhhhH-hhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEec
Q 039007          170 LEYLF-EHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVS  248 (360)
Q Consensus       170 ~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~  248 (360)
                      .+..+ ..+..+++|+.|++++|......|..+..+++|++|++++|......          .+.....+++|+.|+++
T Consensus       412 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------~~~~~~~l~~L~~L~Ls  481 (606)
T 3vq2_A          412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT----------LSNVFANTTNLTFLDLS  481 (606)
T ss_dssp             ESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE----------ECSCCTTCTTCCEEECT
T ss_pred             CCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc----------hHHhhccCCCCCEEECC
Confidence            65555 57889999999999999887778888999999999999998654311          13345677899999999


Q ss_pred             CccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCC-ccceecccCChh
Q 039007          249 GLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLT-TLKTLSIKECPA  326 (360)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~c~~  326 (360)
                      +|......+..+  ..+++|++|++++|...+..|..+.++++|++|++++|++. .+|..+..++ +|++|++++||-
T Consensus       482 ~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          482 KCQLEQISWGVF--DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSV  557 (606)
T ss_dssp             TSCCCEECTTTT--TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCC
T ss_pred             CCcCCccChhhh--cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCc
Confidence            998766656666  78999999999999766677889999999999999999854 7777788887 599999999864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.95  E-value=1.8e-26  Score=223.07  Aligned_cols=139  Identities=15%  Similarity=0.149  Sum_probs=112.8

Q ss_pred             ccccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CC
Q 039007            4 SDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EI   82 (360)
Q Consensus         4 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~   82 (360)
                      .-|.++|+.++.|+|++|.++. .....|.++++|++|++++|.+   ....+.+|.++++|++|++++|.++.+|. .|
T Consensus        45 ~vP~~lp~~~~~LdLs~N~i~~-l~~~~f~~l~~L~~L~Ls~N~i---~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f  120 (635)
T 4g8a_A           45 KIPDNLPFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTLILTGNPIQSLALGAF  120 (635)
T ss_dssp             SCCSSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCC---CEECTTTTTTCTTCCEEECTTCCCCEECGGGG
T ss_pred             ccCCCCCcCCCEEEeeCCCCCC-CCHHHHhCCCCCCEEECCCCcC---CCcChhHhcCCCCCCEEEccCCcCCCCCHHHh
Confidence            3466788999999999999987 5667899999999999999987   44556678999999999999999997775 47


Q ss_pred             CCCCCcCeEeccccccccccc-hhhhcCCccceEeeccccCcC-cCCccccccccccEEEEeccccc
Q 039007           83 GNLKHMRYLDLSRYCQIKKLP-NSICELQSLQTLILRGCLKLE-ELPKDIRYLVSLRMFVVTTKQKS  147 (360)
Q Consensus        83 ~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~  147 (360)
                      ..+++|++|++++| .+..++ ..++++++|++|++++|.+.. .+|..++.+++|++|++++|.+.
T Consensus       121 ~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          121 SGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             TTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             cCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence            88999999999988 455555 457889999999999876543 45677788888888888776543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.95  E-value=2.7e-26  Score=218.83  Aligned_cols=289  Identities=18%  Similarity=0.158  Sum_probs=187.8

Q ss_pred             CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCccc--CcCCCCCCCc
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVL--PREIGNLKHM   88 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L   88 (360)
                      ++++.|++.+|.++. ..+..|.++++|++|++++|.+.    .++..  .+++|++|++++|.++.+  |..+.++++|
T Consensus        76 ~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~----~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L  148 (562)
T 3a79_B           76 SELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSHNRLQ----NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKL  148 (562)
T ss_dssp             TTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECTTSCCC----EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTC
T ss_pred             CCccEEECCCCCCCc-CCHHHhCCCCCCCEEECCCCcCC----ccCcc--ccccCCEEECCCCCccccCchHhhcccCcc
Confidence            689999999999987 55678999999999999999874    23332  789999999999998854  4789999999


Q ss_pred             CeEeccccccccccchhhhcCCcc--ceEeeccccC--cCcCCccccc--------------------------cc----
Q 039007           89 RYLDLSRYCQIKKLPNSICELQSL--QTLILRGCLK--LEELPKDIRY--------------------------LV----  134 (360)
Q Consensus        89 ~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~p~~~~~--------------------------l~----  134 (360)
                      ++|++++|....   ..+..+++|  +.|++++|..  .+..|..+..                          ++    
T Consensus       149 ~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~  225 (562)
T 3a79_B          149 TFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL  225 (562)
T ss_dssp             CEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEE
T ss_pred             cEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEE
Confidence            999999874433   234444555  8888887755  3333333322                          11    


Q ss_pred             ---------------------------------------------------cccEEEEeccccc-cccccC---------
Q 039007          135 ---------------------------------------------------SLRMFVVTTKQKS-LQESGI---------  153 (360)
Q Consensus       135 ---------------------------------------------------~L~~L~l~~~~~~-~~~~~~---------  153 (360)
                                                                         +|++|++++|.+. .+|..+         
T Consensus       226 L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~  305 (562)
T 3a79_B          226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALK  305 (562)
T ss_dssp             EEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCC
T ss_pred             ecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccch
Confidence                                                               4444555544443 222222         


Q ss_pred             --------------------------------------------CCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEec
Q 039007          154 --------------------------------------------ACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILV  189 (360)
Q Consensus       154 --------------------------------------------~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  189 (360)
                                                                  ..+++|+.|++++|...+..+..+..+++|+.|+++
T Consensus       306 ~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  385 (562)
T 3a79_B          306 SLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ  385 (562)
T ss_dssp             EEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECC
T ss_pred             heehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECC
Confidence                                                        445566666666665544455556666666666666


Q ss_pred             cCCCCc--ccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCC
Q 039007          190 DCPSLI--SLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKT  267 (360)
Q Consensus       190 ~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~  267 (360)
                      +|....  .+|..+..+++|++|++++|......+          ......+++|+.|++++|...+..+..+    .++
T Consensus       386 ~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~----------~~~~~~l~~L~~L~l~~n~l~~~~~~~l----~~~  451 (562)
T 3a79_B          386 RNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY----------DRTCAWAESILVLNLSSNMLTGSVFRCL----PPK  451 (562)
T ss_dssp             SSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS----------SCCCCCCTTCCEEECCSSCCCGGGGSSC----CTT
T ss_pred             CCCcCCcccchhhhcCCCCCCEEECCCCcCCCccC----------hhhhcCcccCCEEECCCCCCCcchhhhh----cCc
Confidence            664332  233445666666666666655332111          1123445677777777776544433322    157


Q ss_pred             CcEEecccCCCcccccccccCccccccccccccccccCCCcc-ccCCCccceecccCCh
Q 039007          268 LQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPED-IHHLTTLKTLSIKECP  325 (360)
Q Consensus       268 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~c~  325 (360)
                      |++|++++| .++.+|..+.++++|++|++++|++. .+|.. +..+++|++|++++||
T Consensus       452 L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          452 VKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             CSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCC
T ss_pred             CCEEECCCC-cCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCC
Confidence            888888877 55677776667888888888887754 55554 6777888888887774

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=7e-26  Score=211.02  Aligned_cols=188  Identities=20%  Similarity=0.192  Sum_probs=101.6

Q ss_pred             CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCe
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRY   90 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~   90 (360)
                      ++++.|++.++.+..   .+.+..+++|++|++++|.+.   ...+  +.++++|++|++++|.+..++. +..+++|++
T Consensus        46 ~~l~~L~l~~~~i~~---l~~~~~l~~L~~L~Ls~n~l~---~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~  116 (466)
T 1o6v_A           46 DQVTTLQADRLGIKS---IDGVEYLNNLTQINFSNNQLT---DITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTG  116 (466)
T ss_dssp             HTCCEEECCSSCCCC---CTTGGGCTTCCEEECCSSCCC---CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred             ccccEEecCCCCCcc---CcchhhhcCCCEEECCCCccC---Cchh--hhccccCCEEECCCCccccChh-hcCCCCCCE
Confidence            467777777776655   234667777777777777653   2222  6677777777777777665554 667777777


Q ss_pred             EeccccccccccchhhhcCCccceEeeccccCcCcCCccccc---------------------cccccEEEEeccccccc
Q 039007           91 LDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRY---------------------LVSLRMFVVTTKQKSLQ  149 (360)
Q Consensus        91 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~---------------------l~~L~~L~l~~~~~~~~  149 (360)
                      |++++| .+..++. +..+++|++|++++|... .++ .+..                     +++|+.|++++|.+...
T Consensus       117 L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  192 (466)
T 1o6v_A          117 LTLFNN-QITDIDP-LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI  192 (466)
T ss_dssp             EECCSS-CCCCCGG-GTTCTTCSEEEEEEEEEC-CCG-GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred             EECCCC-CCCCChH-HcCCCCCCEEECCCCccC-CCh-hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC
Confidence            777766 4444444 666777777777765432 232 2334                     44444444444444333


Q ss_pred             cccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCc
Q 039007          150 ESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCK  216 (360)
Q Consensus       150 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  216 (360)
                       ..+..+++|+.|++++|......+  ++.+++|+.|++++|... .+ +.+..+++|++|++++|.
T Consensus       193 -~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~l~~n~  254 (466)
T 1o6v_A          193 -SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DI-GTLASLTNLTDLDLANNQ  254 (466)
T ss_dssp             -GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSC
T ss_pred             -hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc-cc-hhhhcCCCCCEEECCCCc
Confidence             224444455555555443222111  334445555555544321 11 223444555555555543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.95  E-value=2.4e-26  Score=209.34  Aligned_cols=282  Identities=17%  Similarity=0.127  Sum_probs=226.2

Q ss_pred             CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcC-CCCCCCcC
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPRE-IGNLKHMR   89 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~   89 (360)
                      ++++.|++.++.+.. .....|..+++|++|++++|.+   ....+..+.++++|++|++++|.++.+|.. +..+++|+
T Consensus        69 ~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  144 (390)
T 3o6n_A           69 RQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAI---RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  144 (390)
T ss_dssp             CCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ccCcEEECCCCcccc-cChhhccCCCCcCEEECCCCCC---CcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence            579999999999877 5556899999999999999987   445566789999999999999999988876 58999999


Q ss_pred             eEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCc
Q 039007           90 YLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWN  169 (360)
Q Consensus        90 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~  169 (360)
                      +|++++|......+..+..+++|+.|++++|... .+  .+..+++|+.|++++|.+...    ...++|+.|++++|..
T Consensus       145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~--~~~~l~~L~~L~l~~n~l~~~----~~~~~L~~L~l~~n~l  217 (390)
T 3o6n_A          145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HV--DLSLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNSI  217 (390)
T ss_dssp             EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BC--CGGGCTTCSEEECCSSCCSEE----ECCSSCSEEECCSSCC
T ss_pred             EEECCCCccCccChhhccCCCCCCEEECCCCcCC-cc--ccccccccceeeccccccccc----CCCCcceEEECCCCee
Confidence            9999998554444667889999999999997544 34  367789999999999977654    3456899999999754


Q ss_pred             hhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecC
Q 039007          170 LEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSG  249 (360)
Q Consensus       170 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  249 (360)
                       ..++.  ...++|+.|++++|.... . +.+..+++|++|++++|......           +.....+++|+.|++++
T Consensus       218 -~~~~~--~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~Ls~n~l~~~~-----------~~~~~~l~~L~~L~L~~  281 (390)
T 3o6n_A          218 -NVVRG--PVNVELTILKLQHNNLTD-T-AWLLNYPGLVEVDLSYNELEKIM-----------YHPFVKMQRLERLYISN  281 (390)
T ss_dssp             -CEEEC--CCCSSCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCEEE-----------SGGGTTCSSCCEEECCS
T ss_pred             -eeccc--cccccccEEECCCCCCcc-c-HHHcCCCCccEEECCCCcCCCcC-----------hhHccccccCCEEECCC
Confidence             33333  235899999999986543 2 56788999999999998644321           22345678999999999


Q ss_pred             ccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCChh
Q 039007          250 LKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPA  326 (360)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  326 (360)
                      |. +..++...  ..+++|++|++++| .+..+|..+..+++|++|++++|++. .++  +..+++|++|++++|+-
T Consensus       282 n~-l~~~~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~i~-~~~--~~~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          282 NR-LVALNLYG--QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDW  351 (390)
T ss_dssp             SC-CCEEECSS--SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCCCSEEECCSSCE
T ss_pred             Cc-CcccCccc--CCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCccc-eeC--chhhccCCEEEcCCCCc
Confidence            86 44566555  68899999999999 56678888889999999999999865 444  66789999999999864

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=3.1e-26  Score=203.38  Aligned_cols=229  Identities=26%  Similarity=0.367  Sum_probs=118.6

Q ss_pred             ccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceE
Q 039007           36 RRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTL  115 (360)
Q Consensus        36 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  115 (360)
                      +++++|++++|.+.    .++..+.++++|++|++++|.+..+|..+..+++|++|++++| .+..+|..+.++++|+.|
T Consensus        81 ~~l~~L~L~~n~l~----~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           81 PGRVALELRSVPLP----QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLREL  155 (328)
T ss_dssp             TTCCEEEEESSCCS----SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEE
T ss_pred             cceeEEEccCCCch----hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEE
Confidence            45555555555542    2223344455555555555555555555555555555555555 233555555555555555


Q ss_pred             eeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCc
Q 039007          116 ILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLI  195 (360)
Q Consensus       116 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  195 (360)
                      ++++|...+.+|..+...              .....+..+++|+.|++++|.. +.+|..++.+++|++|++++|... 
T Consensus       156 ~L~~n~~~~~~p~~~~~~--------------~~~~~~~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~N~l~-  219 (328)
T 4fcg_A          156 SIRACPELTELPEPLAST--------------DASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLS-  219 (328)
T ss_dssp             EEEEETTCCCCCSCSEEE--------------C-CCCEEESTTCCEEEEEEECC-CCCCGGGGGCTTCCEEEEESSCCC-
T ss_pred             ECCCCCCccccChhHhhc--------------cchhhhccCCCCCEEECcCCCc-CcchHhhcCCCCCCEEEccCCCCC-
Confidence            555555555555443320              0001122355566666655432 245555566666666666665432 


Q ss_pred             ccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEeccc
Q 039007          196 SLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIED  275 (360)
Q Consensus       196 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~  275 (360)
                      .+|+.+..+++|++|++++|...                                   +.+|..+  ..+++|++|++++
T Consensus       220 ~l~~~l~~l~~L~~L~Ls~n~~~-----------------------------------~~~p~~~--~~l~~L~~L~L~~  262 (328)
T 4fcg_A          220 ALGPAIHHLPKLEELDLRGCTAL-----------------------------------RNYPPIF--GGRAPLKRLILKD  262 (328)
T ss_dssp             CCCGGGGGCTTCCEEECTTCTTC-----------------------------------CBCCCCT--TCCCCCCEEECTT
T ss_pred             cCchhhccCCCCCEEECcCCcch-----------------------------------hhhHHHh--cCCCCCCEEECCC
Confidence            44555555566666655554322                                   2222223  4445555555555


Q ss_pred             CCCcccccccccCccccccccccccccccCCCccccCCCccceeccc
Q 039007          276 CPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIK  322 (360)
Q Consensus       276 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  322 (360)
                      |...+.+|..+..+++|++|++++|+..+.+|..+.++++|+.+.+.
T Consensus       263 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred             CCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence            55555555555555555555555555555555555555555555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.94  E-value=3.1e-25  Score=206.60  Aligned_cols=191  Identities=18%  Similarity=0.246  Sum_probs=127.7

Q ss_pred             CCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcC
Q 039007           10 PKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMR   89 (360)
Q Consensus        10 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~   89 (360)
                      .++++.|++.++.+..  +.+ +..+++|++|++++|.+.   ...+  +.++++|++|++++|.++.++. +..+++|+
T Consensus        67 l~~L~~L~Ls~n~l~~--~~~-~~~l~~L~~L~l~~n~l~---~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~  137 (466)
T 1o6v_A           67 LNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIA---DITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLN  137 (466)
T ss_dssp             CTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCC---CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCS
T ss_pred             hcCCCEEECCCCccCC--chh-hhccccCCEEECCCCccc---cChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCC
Confidence            3678888888888776  222 788888888888888763   2222  7778888888888887776654 77777788


Q ss_pred             eEeccccccccccch--------------------hhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccc
Q 039007           90 YLDLSRYCQIKKLPN--------------------SICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQ  149 (360)
Q Consensus        90 ~L~l~~~~~~~~~~~--------------------~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~  149 (360)
                      +|++++|. +..++.                    .+..+++|+.|++++|. ...++ .+..+++|+.|++++|.+...
T Consensus       138 ~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~  214 (466)
T 1o6v_A          138 RLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQISDI  214 (466)
T ss_dssp             EEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCC
T ss_pred             EEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCCh-hhccCCCCCEEEecCCccccc
Confidence            88777763 333322                    14556777777777764 33333 467788888888888877665


Q ss_pred             cccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcC
Q 039007          150 ESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKS  217 (360)
Q Consensus       150 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  217 (360)
                      +. +..+++|+.|++++|.... + ..+..+++|+.|++++|.... ++. +..+++|+.|++++|..
T Consensus       215 ~~-~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l  277 (466)
T 1o6v_A          215 TP-LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISN-LAP-LSGLTKLTELKLGANQI  277 (466)
T ss_dssp             GG-GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCC
T ss_pred             cc-ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCcccc-chh-hhcCCCCCEEECCCCcc
Confidence            33 6667778888887764322 2 245667777777777765433 222 56667777777776643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=6e-26  Score=217.71  Aligned_cols=282  Identities=16%  Similarity=0.117  Sum_probs=224.9

Q ss_pred             CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcC-CCCCCCcC
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPRE-IGNLKHMR   89 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~   89 (360)
                      ++++.|++.++.+.. .....|..+++|++|++++|.+   ....+..|.++++|++|++++|.++.+|.. +..+++|+
T Consensus        75 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  150 (597)
T 3oja_B           75 RQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAI---RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  150 (597)
T ss_dssp             CCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcC---CCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence            579999999999987 5566899999999999999987   445566789999999999999999988776 58999999


Q ss_pred             eEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCc
Q 039007           90 YLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWN  169 (360)
Q Consensus        90 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~  169 (360)
                      +|++++|...+..|..+..+++|+.|++++|.+. .++  ++.+++|+.|++++|.+...    ...++|+.|++++|..
T Consensus       151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~--~~~l~~L~~L~l~~n~l~~l----~~~~~L~~L~ls~n~l  223 (597)
T 3oja_B          151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNSI  223 (597)
T ss_dssp             EEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC--GGGCTTCSEEECCSSCCSEE----ECCTTCSEEECCSSCC
T ss_pred             EEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC--hhhhhhhhhhhcccCccccc----cCCchhheeeccCCcc
Confidence            9999998655555667899999999999998544 343  66789999999999877654    3456899999998754


Q ss_pred             hhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecC
Q 039007          170 LEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSG  249 (360)
Q Consensus       170 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  249 (360)
                       ..++..  ..++|+.|++++|....  +..+..+++|+.|++++|......           +..+..+++|+.|+|++
T Consensus       224 -~~~~~~--~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~-----------~~~~~~l~~L~~L~Ls~  287 (597)
T 3oja_B          224 -NVVRGP--VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIM-----------YHPFVKMQRLERLYISN  287 (597)
T ss_dssp             -CEEECS--CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEE-----------SGGGTTCSSCCEEECTT
T ss_pred             -cccccc--cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCC-----------HHHhcCccCCCEEECCC
Confidence             333322  24789999999986543  466788999999999998644321           23355678999999999


Q ss_pred             ccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCChh
Q 039007          250 LKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPA  326 (360)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  326 (360)
                      |.. ..++...  ..+++|++|+|++| .+..+|..+..+++|+.|++++|.+.. ++  +..+++|++|++++|+-
T Consensus       288 N~l-~~l~~~~--~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~~  357 (597)
T 3oja_B          288 NRL-VALNLYG--QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDW  357 (597)
T ss_dssp             SCC-CEEECSS--SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCE
T ss_pred             CCC-CCCCccc--ccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCCC
Confidence            864 4566555  67899999999998 556788888899999999999998654 33  56789999999999864

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.94  E-value=5.3e-25  Score=203.91  Aligned_cols=182  Identities=16%  Similarity=0.096  Sum_probs=111.9

Q ss_pred             CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCe
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRY   90 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~   90 (360)
                      ++++.|++.++.+.+  + +.+..+++|++|++++|.+...    +  +..+++|++|++++|.++.++  +..+++|++
T Consensus        42 ~~L~~L~Ls~n~l~~--~-~~l~~l~~L~~L~Ls~n~l~~~----~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~  110 (457)
T 3bz5_A           42 ATLTSLDCHNSSITD--M-TGIEKLTGLTKLICTSNNITTL----D--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY  110 (457)
T ss_dssp             TTCCEEECCSSCCCC--C-TTGGGCTTCSEEECCSSCCSCC----C--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred             CCCCEEEccCCCccc--C-hhhcccCCCCEEEccCCcCCeE----c--cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence            667888888887776  2 3677888888888888876421    2  667788888888888777664  677778888


Q ss_pred             EeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCch
Q 039007           91 LDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNL  170 (360)
Q Consensus        91 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  170 (360)
                      |++++| .++.++  ++.+++|++|++++|...+ ++  ++.+++|+.|++++|...... .+..+++|+.|++++|.. 
T Consensus       111 L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l-  182 (457)
T 3bz5_A          111 LNCDTN-KLTKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKI-  182 (457)
T ss_dssp             EECCSS-CCSCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCC-
T ss_pred             EECCCC-cCCeec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCcc-
Confidence            888777 344444  6677777777777764433 32  556666666666666322211 355556666666665532 


Q ss_pred             hhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCc
Q 039007          171 EYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCK  216 (360)
Q Consensus       171 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  216 (360)
                      +.++  +..+++|+.|++++|.... +  .++.+++|++|++++|.
T Consensus       183 ~~l~--l~~l~~L~~L~l~~N~l~~-~--~l~~l~~L~~L~Ls~N~  223 (457)
T 3bz5_A          183 TELD--VSQNKLLNRLNCDTNNITK-L--DLNQNIQLTFLDCSSNK  223 (457)
T ss_dssp             CCCC--CTTCTTCCEEECCSSCCSC-C--CCTTCTTCSEEECCSSC
T ss_pred             ceec--cccCCCCCEEECcCCcCCe-e--ccccCCCCCEEECcCCc
Confidence            2222  4455555555555553222 2  24445555555555543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.94  E-value=2.3e-25  Score=221.79  Aligned_cols=275  Identities=15%  Similarity=0.050  Sum_probs=174.8

Q ss_pred             CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCc-ccCcC--CCCCCC
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIE-VLPRE--IGNLKH   87 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~--~~~l~~   87 (360)
                      ++++.|++.++.......+..|.++++|++|++++|.+   ....+..|.++++|++|++++|.+. .+|..  +..+++
T Consensus        48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l---~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~  124 (844)
T 3j0a_A           48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI---YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA  124 (844)
T ss_dssp             CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC---CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSS
T ss_pred             ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC---cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCC
Confidence            67999999998665523467899999999999999987   4555677999999999999999987 45554  889999


Q ss_pred             cCeEeccccccccccc-hhhhcCCccceEeeccccCcCcCCcccccc--ccccEEEEeccccccc-cccCCCCCC-----
Q 039007           88 MRYLDLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELPKDIRYL--VSLRMFVVTTKQKSLQ-ESGIACLSS-----  158 (360)
Q Consensus        88 L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l--~~L~~L~l~~~~~~~~-~~~~~~l~~-----  158 (360)
                      |++|++++|...+..+ ..++++++|++|++++|...+..|..+..+  ++|+.|++++|.+... +..+..+++     
T Consensus       125 L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~  204 (844)
T 3j0a_A          125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM  204 (844)
T ss_dssp             CCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTC
T ss_pred             CCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccC
Confidence            9999999985544433 568899999999999987766667777666  7788888887766543 333444443     


Q ss_pred             -CcEeeccCCCchhhhHhh------------------------------------hcC--CCCccEEEeccCCCCcccCc
Q 039007          159 -LRSLIISHCWNLEYLFEH------------------------------------IGQ--LSGLRSLILVDCPSLISLPS  199 (360)
Q Consensus       159 -L~~L~l~~~~~~~~~~~~------------------------------------l~~--l~~L~~L~l~~~~~~~~~~~  199 (360)
                       |+.|++++|......+..                                    +..  .++|+.|++++|......+.
T Consensus       205 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~  284 (844)
T 3j0a_A          205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR  284 (844)
T ss_dssp             CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC
T ss_pred             ceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChh
Confidence             777777766322111111                                    111  25667777776655555555


Q ss_pred             ccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCc
Q 039007          200 AVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNF  279 (360)
Q Consensus       200 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  279 (360)
                      .+..+++|+.|++++|......           ...+..+++|+.|++++|......+..+  ..+++|++|++++|...
T Consensus       285 ~~~~l~~L~~L~L~~n~i~~~~-----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~i~  351 (844)
T 3j0a_A          285 VFETLKDLKVLNLAYNKINKIA-----------DEAFYGLDNLQVLNLSYNLLGELYSSNF--YGLPKVAYIDLQKNHIA  351 (844)
T ss_dssp             CSSSCCCCCEEEEESCCCCEEC-----------TTTTTTCSSCCEEEEESCCCSCCCSCSC--SSCTTCCEEECCSCCCC
T ss_pred             hhhcCCCCCEEECCCCcCCCCC-----------hHHhcCCCCCCEEECCCCCCCccCHHHh--cCCCCCCEEECCCCCCC
Confidence            5666677777777666433211           1122334455555555554333323333  44555555555555322


Q ss_pred             ccccccccCccccccccccccc
Q 039007          280 MALQGSLKDLEALETLLISACR  301 (360)
Q Consensus       280 ~~~~~~~~~l~~L~~L~l~~~~  301 (360)
                      ...+..+.++++|+.|++++|.
T Consensus       352 ~~~~~~~~~l~~L~~L~Ls~N~  373 (844)
T 3j0a_A          352 IIQDQTFKFLEKLQTLDLRDNA  373 (844)
T ss_dssp             CCCSSCSCSCCCCCEEEEETCC
T ss_pred             ccChhhhcCCCCCCEEECCCCC
Confidence            2222334445555555555544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=3.2e-26  Score=203.29  Aligned_cols=233  Identities=22%  Similarity=0.276  Sum_probs=172.5

Q ss_pred             CCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEE
Q 039007           62 SQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVV  141 (360)
Q Consensus        62 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l  141 (360)
                      ..++++|+++++.++.+|..+.++++|++|++++|. +..+|..++.+++|++|++++|.+. .+|..++.+++|++|++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            467888888888888888777778888888888774 4477777788888888888877444 77777778888888888


Q ss_pred             ecccccc-ccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccc
Q 039007          142 TTKQKSL-QESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNL  220 (360)
Q Consensus       142 ~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  220 (360)
                      ++|.... .+..+.      ...+.         ..+..+++|++|++++|... .+|..++.+++|++|++++|.    
T Consensus       158 ~~n~~~~~~p~~~~------~~~~~---------~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~----  217 (328)
T 4fcg_A          158 RACPELTELPEPLA------STDAS---------GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP----  217 (328)
T ss_dssp             EEETTCCCCCSCSE------EEC-C---------CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSC----
T ss_pred             CCCCCccccChhHh------hccch---------hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCC----
Confidence            7764432 222221      11111         22456788888888887443 677777777777777776653    


Q ss_pred             cccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCcccccccccccc
Q 039007          221 NLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISAC  300 (360)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~  300 (360)
                                                      +..++..+  ..+++|++|++++|...+.+|..+.++++|++|++++|
T Consensus       218 --------------------------------l~~l~~~l--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n  263 (328)
T 4fcg_A          218 --------------------------------LSALGPAI--HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC  263 (328)
T ss_dssp             --------------------------------CCCCCGGG--GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC
T ss_pred             --------------------------------CCcCchhh--ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC
Confidence                                            22344444  67899999999999888899999999999999999999


Q ss_pred             ccccCCCccccCCCccceecccCChhHHhhcCCCCCCCCccccccceeeeccccc
Q 039007          301 RKLSSLPEDIHHLTTLKTLSIKECPALWERCKPLTGEDWSKIARIPRIMLDDEMT  355 (360)
Q Consensus       301 ~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  355 (360)
                      ...+.+|..+..+++|++|++++|+...     ..+..+..+..+..+.+..+.+
T Consensus       264 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~-----~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          264 SNLLTLPLDIHRLTQLEKLDLRGCVNLS-----RLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             TTCCBCCTTGGGCTTCCEEECTTCTTCC-----CCCGGGGGSCTTCEEECCGGGS
T ss_pred             CchhhcchhhhcCCCCCEEeCCCCCchh-----hccHHHhhccCceEEeCCHHHH
Confidence            9999999999999999999999996433     3455566677777777766554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.93  E-value=1.3e-24  Score=201.35  Aligned_cols=279  Identities=15%  Similarity=0.113  Sum_probs=212.1

Q ss_pred             CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCe
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRY   90 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~   90 (360)
                      ++++.|++.++.+++.    .+..+++|++|++++|.+...    +  +.++++|++|++++|.++.+|  +..+++|++
T Consensus        64 ~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~Ls~N~l~~~----~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~  131 (457)
T 3bz5_A           64 TGLTKLICTSNNITTL----DLSQNTNLTYLACDSNKLTNL----D--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTY  131 (457)
T ss_dssp             TTCSEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSCC----C--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCE
T ss_pred             CCCCEEEccCCcCCeE----ccccCCCCCEEECcCCCCcee----e--cCCCCcCCEEECCCCcCCeec--CCCCCcCCE
Confidence            7899999999998882    288999999999999987432    2  788999999999999998875  889999999


Q ss_pred             EeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCch
Q 039007           91 LDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNL  170 (360)
Q Consensus        91 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  170 (360)
                      |++++| .++.++  ++.+++|++|++++|...+.+  .++.+++|+.|++++|.+...+  +..+++|+.|++++|...
T Consensus       132 L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~  204 (457)
T 3bz5_A          132 LNCARN-TLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNIT  204 (457)
T ss_dssp             EECTTS-CCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCS
T ss_pred             EECCCC-ccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCC
Confidence            999988 444553  788999999999998777766  4788999999999999988875  888999999999998544


Q ss_pred             hhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCc
Q 039007          171 EYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGL  250 (360)
Q Consensus       171 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  250 (360)
                      . +  .++.+++|+.|++++|.... +|  +..+++|++|++++|....... ..+.   ..........+|+.|++++|
T Consensus       205 ~-~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~-~~l~---~L~~L~l~~n~L~~L~l~~n  274 (457)
T 3bz5_A          205 K-L--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV-STLS---KLTTLHCIQTDLLEIDLTHN  274 (457)
T ss_dssp             C-C--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC-TTCT---TCCEEECTTCCCSCCCCTTC
T ss_pred             e-e--ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH-HHCC---CCCEEeccCCCCCEEECCCC
Confidence            3 3  37789999999999986544 65  7789999999999886443211 0000   00000011125667777777


Q ss_pred             cCCCCchhhhhcCCCCCCcEEecccCCCcccccc--------cccCccccccccccccccccCCCccccCCCccceeccc
Q 039007          251 KQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQG--------SLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIK  322 (360)
Q Consensus       251 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~--------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  322 (360)
                      ...+.+|.    ..+++|++|++++|..++.+|.        .+.++++|++|++++|++.+ ++  +.++++|+.|+++
T Consensus       275 ~~~~~~~~----~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~  347 (457)
T 3bz5_A          275 TQLIYFQA----EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCV  347 (457)
T ss_dssp             TTCCEEEC----TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECC
T ss_pred             ccCCcccc----cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEECC
Confidence            76666652    5678888888888876665543        24566788888888887554 43  7778888888888


Q ss_pred             CCh
Q 039007          323 ECP  325 (360)
Q Consensus       323 ~c~  325 (360)
                      +|.
T Consensus       348 ~N~  350 (457)
T 3bz5_A          348 NAH  350 (457)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.93  E-value=6.7e-24  Score=188.78  Aligned_cols=288  Identities=16%  Similarity=0.134  Sum_probs=212.0

Q ss_pred             cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CCCCCCCcCeEeccccccccccchhhhcCCccceE
Q 039007           37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTL  115 (360)
Q Consensus        37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  115 (360)
                      +++.++++++.+......+      .+.|++|++++|.++.++. .+..+++|++|++++|...+..|..+..+++|++|
T Consensus        32 ~l~~l~~~~~~l~~lp~~~------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDL------PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL  105 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSC------CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCeEEEecCCCccccCccC------CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence            7899999988764322222      2678999999999987665 68999999999999885544457889999999999


Q ss_pred             eeccccCcCcCCccccccccccEEEEecccccccc-ccCCCCCCCcEeeccCCCchh--hhHhhhcCCCCccEEEeccCC
Q 039007          116 ILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQE-SGIACLSSLRSLIISHCWNLE--YLFEHIGQLSGLRSLILVDCP  192 (360)
Q Consensus       116 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~  192 (360)
                      ++++|. ...+|..+.  ++|+.|++++|.+...+ ..+..+++|+.|++++|....  ..+..+..+++|+.|++++|.
T Consensus       106 ~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  182 (330)
T 1xku_A          106 YLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  182 (330)
T ss_dssp             ECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             ECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence            999874 456776554  78999999999887663 457889999999999986532  455678889999999999985


Q ss_pred             CCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEe
Q 039007          193 SLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLG  272 (360)
Q Consensus       193 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~  272 (360)
                       .+.+|..+.  ++|++|++++|......           +.....+++|+.|++++|......+..+  ..+++|++|+
T Consensus       183 -l~~l~~~~~--~~L~~L~l~~n~l~~~~-----------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~  246 (330)
T 1xku_A          183 -ITTIPQGLP--PSLTELHLDGNKITKVD-----------AASLKGLNNLAKLGLSFNSISAVDNGSL--ANTPHLRELH  246 (330)
T ss_dssp             -CCSCCSSCC--TTCSEEECTTSCCCEEC-----------TGGGTTCTTCCEEECCSSCCCEECTTTG--GGSTTCCEEE
T ss_pred             -cccCCcccc--ccCCEEECCCCcCCccC-----------HHHhcCCCCCCEEECCCCcCceeChhhc--cCCCCCCEEE
Confidence             445665543  89999999988643321           2234567789999999987554444445  6789999999


Q ss_pred             cccCCCcccccccccCccccccccccccccccCCCcccc------CCCccceecccCChhHHhhcCCCCCCCCccccccc
Q 039007          273 IEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIH------HLTTLKTLSIKECPALWERCKPLTGEDWSKIARIP  346 (360)
Q Consensus       273 L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~------~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~l~  346 (360)
                      +++| .++.+|..+..+++|++|++++|++....+..+.      ..+.|+.+++.+||....   ......+.....+.
T Consensus       247 L~~N-~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~---~i~~~~f~~~~~l~  322 (330)
T 1xku_A          247 LNNN-KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW---EIQPSTFRCVYVRA  322 (330)
T ss_dssp             CCSS-CCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG---GSCGGGGTTCCCGG
T ss_pred             CCCC-cCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc---ccCcccccccccee
Confidence            9998 5668888899999999999999986543333332      247889999999984321   11223455556677


Q ss_pred             eeeeccc
Q 039007          347 RIMLDDE  353 (360)
Q Consensus       347 ~~~~~~~  353 (360)
                      .+++.++
T Consensus       323 ~l~L~~N  329 (330)
T 1xku_A          323 AVQLGNY  329 (330)
T ss_dssp             GEEC---
T ss_pred             EEEeccc
Confidence            7776654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.92  E-value=3.8e-24  Score=190.49  Aligned_cols=287  Identities=16%  Similarity=0.130  Sum_probs=216.4

Q ss_pred             cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCccc-CcCCCCCCCcCeEeccccccccccchhhhcCCccceE
Q 039007           37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVL-PREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTL  115 (360)
Q Consensus        37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  115 (360)
                      +++.++++++.+...+..    +  .++|++|++++|.+..+ |..+..+++|++|++++|......|..+.++++|++|
T Consensus        34 ~l~~l~~~~~~l~~ip~~----~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  107 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKE----I--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL  107 (332)
T ss_dssp             ETTEEECCSSCCSSCCSC----C--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred             cCCEEECCCCCccccCCC----C--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence            799999999886432222    2  36899999999999966 4579999999999999985554557789999999999


Q ss_pred             eeccccCcCcCCccccccccccEEEEecccccccc-ccCCCCCCCcEeeccCCCchh--hhHhhhcCCCCccEEEeccCC
Q 039007          116 ILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQE-SGIACLSSLRSLIISHCWNLE--YLFEHIGQLSGLRSLILVDCP  192 (360)
Q Consensus       116 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~  192 (360)
                      ++++|. ...+|..+.  ++|++|++++|.+...+ ..+..+++|+.|++++|....  ..+..+..+ +|+.|++++|.
T Consensus       108 ~L~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~  183 (332)
T 2ft3_A          108 YISKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK  183 (332)
T ss_dssp             ECCSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred             ECCCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence            999974 457776655  89999999999988765 458899999999999986532  445566666 99999999985


Q ss_pred             CCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEe
Q 039007          193 SLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLG  272 (360)
Q Consensus       193 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~  272 (360)
                       .+.+|..+.  ++|++|++++|.....           .......+++|+.|++++|......+..+  ..+++|++|+
T Consensus       184 -l~~l~~~~~--~~L~~L~l~~n~i~~~-----------~~~~l~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~  247 (332)
T 2ft3_A          184 -LTGIPKDLP--ETLNELHLDHNKIQAI-----------ELEDLLRYSKLYRLGLGHNQIRMIENGSL--SFLPTLRELH  247 (332)
T ss_dssp             -CSSCCSSSC--SSCSCCBCCSSCCCCC-----------CTTSSTTCTTCSCCBCCSSCCCCCCTTGG--GGCTTCCEEE
T ss_pred             -CCccCcccc--CCCCEEECCCCcCCcc-----------CHHHhcCCCCCCEEECCCCcCCcCChhHh--hCCCCCCEEE
Confidence             445666553  7999999998864432           12345677899999999997665544455  7889999999


Q ss_pred             cccCCCcccccccccCccccccccccccccccCCCccccC------CCccceecccCChhHHhhcCCCCCCCCccccccc
Q 039007          273 IEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHH------LTTLKTLSIKECPALWERCKPLTGEDWSKIARIP  346 (360)
Q Consensus       273 L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~l~  346 (360)
                      +++| .++.+|..+..+++|++|++++|++....+..+..      .+.|+.|++.+||.....   .....+..+..+.
T Consensus       248 L~~N-~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~---~~~~~~~~l~~L~  323 (332)
T 2ft3_A          248 LDNN-KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE---VQPATFRCVTDRL  323 (332)
T ss_dssp             CCSS-CCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG---SCGGGGTTBCCST
T ss_pred             CCCC-cCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc---cCcccccccchhh
Confidence            9998 56688988999999999999999866543333332      467999999999843221   1223345566677


Q ss_pred             eeeeccc
Q 039007          347 RIMLDDE  353 (360)
Q Consensus       347 ~~~~~~~  353 (360)
                      .+++.++
T Consensus       324 ~l~l~~n  330 (332)
T 2ft3_A          324 AIQFGNY  330 (332)
T ss_dssp             TEEC---
T ss_pred             hhhcccc
Confidence            7777654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=9e-25  Score=196.23  Aligned_cols=253  Identities=21%  Similarity=0.180  Sum_probs=151.7

Q ss_pred             ccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCccc-CcCCCCCCCcCeEeccccccccccchh-hhcCCccc
Q 039007           36 RRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVL-PREIGNLKHMRYLDLSRYCQIKKLPNS-ICELQSLQ  113 (360)
Q Consensus        36 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~  113 (360)
                      ++|++|++++|.+   ....+..+.++++|++|++++|.++.+ |..+..+++|++|++++| .++.++.. +..+++|+
T Consensus        52 ~~L~~L~l~~n~i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~  127 (353)
T 2z80_A           52 EAVKSLDLSNNRI---TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLT  127 (353)
T ss_dssp             TTCCEEECTTSCC---CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCS
T ss_pred             ccCcEEECCCCcC---cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCC
Confidence            3677777777765   333334566777777777777777644 345677777777777766 34444433 66677777


Q ss_pred             eEeeccccCcCcCCc--cccccccccEEEEeccc-cccc-cccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEec
Q 039007          114 TLILRGCLKLEELPK--DIRYLVSLRMFVVTTKQ-KSLQ-ESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILV  189 (360)
Q Consensus       114 ~L~l~~~~~~~~~p~--~~~~l~~L~~L~l~~~~-~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  189 (360)
                      +|++++|. ...+|.  .+..+++|+.|++++|. +... +..+..+++|+.|++++|......+..+..+++|++|+++
T Consensus       128 ~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  206 (353)
T 2z80_A          128 FLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH  206 (353)
T ss_dssp             EEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred             EEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence            77777753 334554  46677777777777763 4333 3456677777777777765544556666777777777777


Q ss_pred             cCCCCcccCcc-cCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCC----CchhhhhcCC
Q 039007          190 DCPSLISLPSA-VKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLL----DLPQWLLQGS  264 (360)
Q Consensus       190 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~~~~  264 (360)
                      +|.. ..++.. +..+++|++|++++|........        ..........++.+++.++....    .+|.++  ..
T Consensus       207 ~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--------~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l--~~  275 (353)
T 2z80_A          207 MKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFS--------ELSTGETNSLIKKFTFRNVKITDESLFQVMKLL--NQ  275 (353)
T ss_dssp             CSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------------CCCCCCEEEEESCBCCHHHHHHHHHHH--HT
T ss_pred             CCcc-ccchhhhhhhcccccEEECCCCcccccccc--------ccccccccchhhccccccccccCcchhhhHHHH--hc
Confidence            7653 333332 33467777777777643321110        00111223345555555543221    345555  56


Q ss_pred             CCCCcEEecccCCCccccccc-ccCccccccccccccccccC
Q 039007          265 TKTLQFLGIEDCPNFMALQGS-LKDLEALETLLISACRKLSS  305 (360)
Q Consensus       265 ~~~L~~L~L~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~  305 (360)
                      +++|++|++++| .++.+|.. +..+++|++|++++|++..+
T Consensus       276 l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          276 ISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             ccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence            778888888877 44456654 47778888888888776544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.92  E-value=1.6e-24  Score=190.68  Aligned_cols=207  Identities=17%  Similarity=0.126  Sum_probs=107.8

Q ss_pred             ccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCC
Q 039007            6 CQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNL   85 (360)
Q Consensus         6 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l   85 (360)
                      +..+|+++++|++.++.+.. .....|.++++|++|++++|.+... +..+..+..+++|++|++++|.+..+|..+..+
T Consensus        23 p~~~~~~l~~L~L~~n~l~~-i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l  100 (306)
T 2z66_A           23 PTGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFK-GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL  100 (306)
T ss_dssp             CSCCCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCEE-EEEEHHHHSCSCCCEEECCSCSEEEEEEEEETC
T ss_pred             CCCCCCCCCEEECCCCccCc-cCHhHhhccccCCEEECCCCccCcc-cCcccccccccccCEEECCCCccccChhhcCCC
Confidence            34455566666666666554 3333456666666666666654211 111233445666666666666666555556666


Q ss_pred             CCcCeEeccccccccccc--hhhhcCCccceEeeccccCcCcCCccccccccccEEEEecccccc--ccccCCCCCCCcE
Q 039007           86 KHMRYLDLSRYCQIKKLP--NSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSL--QESGIACLSSLRS  161 (360)
Q Consensus        86 ~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~  161 (360)
                      ++|++|++++| .+..++  ..+..+++|+.|++++|...+..+..+..+++|+.|++++|.+..  .+..+..+++|+.
T Consensus       101 ~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  179 (306)
T 2z66_A          101 EQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF  179 (306)
T ss_dssp             TTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             CCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCE
Confidence            66666666655 233332  245556666666666654444444445555666666666555543  3445555555555


Q ss_pred             eeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCC
Q 039007          162 LIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDC  215 (360)
Q Consensus       162 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  215 (360)
                      |++++|...+..+..+..+++|+.|++++|......+..+..+++|++|++++|
T Consensus       180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  233 (306)
T 2z66_A          180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN  233 (306)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred             EECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence            555555433333444455555555555555333222223344444444444444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.91  E-value=2.6e-23  Score=192.92  Aligned_cols=243  Identities=17%  Similarity=0.100  Sum_probs=134.7

Q ss_pred             cEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccc
Q 039007           66 RVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQ  145 (360)
Q Consensus        66 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~  145 (360)
                      ..++.++..++.+|..+.  +++++|++++|......+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.
T Consensus        57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  134 (452)
T 3zyi_A           57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW  134 (452)
T ss_dssp             CEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence            344444444555554432  455566665553333334445555666666665554433333445555566666666555


Q ss_pred             ccccc-ccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCc-ccCCCCCCCEEeecCCcCcccccc
Q 039007          146 KSLQE-SGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPS-AVKCLSSSETLILIDCKSLNLNLN  223 (360)
Q Consensus       146 ~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~  223 (360)
                      +...+ ..+..+++|++|++++|......+..+..+++|+.|++++|...+.++. .+..+++|++|++++|.....   
T Consensus       135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---  211 (452)
T 3zyi_A          135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM---  211 (452)
T ss_dssp             CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC---
T ss_pred             CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc---
Confidence            55443 2355556666666665543322233455566666666666555544443 355566666666666543221   


Q ss_pred             ccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccc
Q 039007          224 IEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKL  303 (360)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  303 (360)
                                .....+++|+.|+|++|......+..+  ..+++|++|++++|......+..+.++++|+.|++++|.+.
T Consensus       212 ----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  279 (452)
T 3zyi_A          212 ----------PNLTPLVGLEELEMSGNHFPEIRPGSF--HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS  279 (452)
T ss_dssp             ----------CCCTTCTTCCEEECTTSCCSEECGGGG--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             ----------ccccccccccEEECcCCcCcccCcccc--cCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence                      113445566666666666544445455  66777777777777544455566677777777777777655


Q ss_pred             cCCCccccCCCccceecccCCh
Q 039007          304 SSLPEDIHHLTTLKTLSIKECP  325 (360)
Q Consensus       304 ~~~~~~~~~~~~L~~L~l~~c~  325 (360)
                      ...+..+..+++|++|++++||
T Consensus       280 ~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          280 SLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             CCCTTSSTTCTTCCEEECCSSC
T ss_pred             ccChHHhccccCCCEEEccCCC
Confidence            4444455667777777777664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.91  E-value=1.3e-26  Score=215.76  Aligned_cols=208  Identities=17%  Similarity=0.128  Sum_probs=134.0

Q ss_pred             CCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCC-cccchHHHhhcCCCccEEEEeCCCCcc-cCcC-CCCC
Q 039007            9 IPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENT-SESFFTSCISKSQFLRVLDLDDSTIEV-LPRE-IGNL   85 (360)
Q Consensus         9 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~-~~~l   85 (360)
                      +|++++.|++.++.+....+...+..+++|++|++++|.+.. ....++..+..+++|++|++++|.+.. .+.. ...+
T Consensus         1 l~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l   80 (461)
T 1z7x_W            1 MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   80 (461)
T ss_dssp             -CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence            478889999988888775555568888899999999888631 112456678888889999998888762 2221 2223


Q ss_pred             C----CcCeEecccccccc----ccchhhhcCCccceEeeccccCcCcCCccc-----cccccccEEEEeccccccc---
Q 039007           86 K----HMRYLDLSRYCQIK----KLPNSICELQSLQTLILRGCLKLEELPKDI-----RYLVSLRMFVVTTKQKSLQ---  149 (360)
Q Consensus        86 ~----~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~-----~~l~~L~~L~l~~~~~~~~---  149 (360)
                      +    +|++|++++|....    .++..+..+++|++|++++|......+..+     ...++|++|++++|.+...   
T Consensus        81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  160 (461)
T 1z7x_W           81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  160 (461)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence            3    68888888885442    346667788888888888875443222222     1245688888887766542   


Q ss_pred             --cccCCCCCCCcEeeccCCCchhhhHhhhc-----CCCCccEEEeccCCCCc----ccCcccCCCCCCCEEeecCCc
Q 039007          150 --ESGIACLSSLRSLIISHCWNLEYLFEHIG-----QLSGLRSLILVDCPSLI----SLPSAVKCLSSSETLILIDCK  216 (360)
Q Consensus       150 --~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~  216 (360)
                        +..+..+++|+.|++++|......+..+.     ..++|+.|++++|....    .++..+..+++|++|++++|.
T Consensus       161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  238 (461)
T 1z7x_W          161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK  238 (461)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence              33455567777888777754333222222     25577777777775433    245555566777777777664

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.91  E-value=1.2e-23  Score=185.01  Aligned_cols=246  Identities=18%  Similarity=0.069  Sum_probs=164.7

Q ss_pred             cEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcC-CCCCCCcCeEecccccccc--ccchhhhcCCccceE
Q 039007           39 RTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPRE-IGNLKHMRYLDLSRYCQIK--KLPNSICELQSLQTL  115 (360)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L  115 (360)
                      +.++++++.+...+..+      .++|++|++++|.++.+|.. +.++++|++|++++|....  ..+..+..+++|++|
T Consensus        10 ~~l~c~~~~l~~ip~~~------~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L   83 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGI------PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL   83 (306)
T ss_dssp             TEEECCSSCCSSCCSCC------CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEE
T ss_pred             CEEEcCCCCcccCCCCC------CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEE
Confidence            46777766653222211      25788999999888877765 6788899999998874332  225566778899999


Q ss_pred             eeccccCcCcCCccccccccccEEEEecccccccc--ccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCC
Q 039007          116 ILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQE--SGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPS  193 (360)
Q Consensus       116 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  193 (360)
                      ++++|. ...+|..+..+++|++|++++|.+...+  ..+..+++|+.|++++|......+..+..+++|++|++++|..
T Consensus        84 ~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  162 (306)
T 2z66_A           84 DLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF  162 (306)
T ss_dssp             ECCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred             ECCCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence            998874 4457777888888899988888877664  3677888888888888766555666677788888888888765


Q ss_pred             Cc-ccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEe
Q 039007          194 LI-SLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLG  272 (360)
Q Consensus       194 ~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~  272 (360)
                      .. .+|..+..+++|++|++++|......           +.....+++|+.|++++|......+..+  ..+++|++|+
T Consensus       163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----------~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~  229 (306)
T 2z66_A          163 QENFLPDIFTELRNLTFLDLSQCQLEQLS-----------PTAFNSLSSLQVLNMSHNNFFSLDTFPY--KCLNSLQVLD  229 (306)
T ss_dssp             GGGEECSCCTTCTTCCEEECTTSCCCEEC-----------TTTTTTCTTCCEEECTTSCCSBCCSGGG--TTCTTCCEEE
T ss_pred             ccccchhHHhhCcCCCEEECCCCCcCCcC-----------HHHhcCCCCCCEEECCCCccCccChhhc--cCcccCCEeE
Confidence            44 46777777888888888877533211           1223445566666666665433323233  5566666666


Q ss_pred             cccCCCcccccccccCcc-cccccccccccccc
Q 039007          273 IEDCPNFMALQGSLKDLE-ALETLLISACRKLS  304 (360)
Q Consensus       273 L~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~  304 (360)
                      +++|...+..+..+..++ +|++|++++|++..
T Consensus       230 L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             CTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             CCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            666654445555555553 66666666666543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.91  E-value=3.4e-23  Score=191.47  Aligned_cols=150  Identities=25%  Similarity=0.304  Sum_probs=77.0

Q ss_pred             CCccEEEEeCCCCccc-CcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCC-ccccccccccEEE
Q 039007           63 QFLRVLDLDDSTIEVL-PREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELP-KDIRYLVSLRMFV  140 (360)
Q Consensus        63 ~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~  140 (360)
                      +.+++|++++|.+..+ +..+..+++|++|++++|......+..+.++++|+.|++++|.+. .+| ..+..+++|+.|+
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELW  142 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEEE
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccccCceee
Confidence            3456666666665533 244556666666666655332223344555666666666655333 333 2455566666666


Q ss_pred             Eecccccccc-ccCCCCCCCcEeeccCCCchhhhHh-hhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCC
Q 039007          141 VTTKQKSLQE-SGIACLSSLRSLIISHCWNLEYLFE-HIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDC  215 (360)
Q Consensus       141 l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  215 (360)
                      +++|.+...+ ..+..+++|+.|++.+|..+..++. .+..+++|+.|++++|. +..+|. +..+++|+.|++++|
T Consensus       143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~Ls~N  217 (440)
T 3zyj_A          143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN-LTPLIKLDELDLSGN  217 (440)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC-CTTCSSCCEEECTTS
T ss_pred             CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc-cCCCcccCEEECCCC
Confidence            6666555442 2455555666666655444443332 34455555555555552 223332 344455555555554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.91  E-value=3.5e-24  Score=186.59  Aligned_cols=267  Identities=18%  Similarity=0.113  Sum_probs=165.4

Q ss_pred             eEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCccc-CcCCCCCCCcCeEe
Q 039007           14 RHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVL-PREIGNLKHMRYLD   92 (360)
Q Consensus        14 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~   92 (360)
                      +.++...+.+..  ++.  ...++|++|++++|.+   ....+..|..+++|++|++++|.++.+ |..+..+++|++|+
T Consensus        14 ~~~~c~~~~l~~--ip~--~~~~~l~~L~l~~n~i---~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   86 (285)
T 1ozn_A           14 VTTSCPQQGLQA--VPV--GIPAASQRIFLHGNRI---SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD   86 (285)
T ss_dssp             CEEECCSSCCSS--CCT--TCCTTCSEEECTTSCC---CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             eEEEcCcCCccc--CCc--CCCCCceEEEeeCCcC---CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEe
Confidence            445555555544  221  1235777777777776   333445567777777777777777744 55677777777777


Q ss_pred             cccccccccc-chhhhcCCccceEeeccccCcCcCCccccccccccEEEEecccccccc-ccCCCCCCCcEeeccCCCch
Q 039007           93 LSRYCQIKKL-PNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQE-SGIACLSSLRSLIISHCWNL  170 (360)
Q Consensus        93 l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~  170 (360)
                      +++|..++.+ +..+..+++|++|++++|...+..|..+..+++|++|++++|.+...+ ..+..+++|+.|++++|...
T Consensus        87 l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  166 (285)
T 1ozn_A           87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS  166 (285)
T ss_dssp             CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc
Confidence            7776535544 556677777777777776555544566677777777777777776554 34667777777777776443


Q ss_pred             hhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCc
Q 039007          171 EYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGL  250 (360)
Q Consensus       171 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  250 (360)
                      ...+..+..+++|+.|++++|......+..+..+++|+.|++++|......           ......+++|+.|++++|
T Consensus       167 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP-----------TEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-----------HHHHTTCTTCCEEECCSS
T ss_pred             ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC-----------HHHcccCcccCEEeccCC
Confidence            333334667777788888777665555667777777888887776533211           112345567788888877


Q ss_pred             cCCCCchhhhhcCCCCCCcEEecccCCCcccccccccC--ccccccccccccc
Q 039007          251 KQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKD--LEALETLLISACR  301 (360)
Q Consensus       251 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~--l~~L~~L~l~~~~  301 (360)
                      ....+.+...   ....++.+....+......|..+.+  +..++..++.+|.
T Consensus       236 ~~~c~~~~~~---~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~  285 (285)
T 1ozn_A          236 PWVCDCRARP---LWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA  285 (285)
T ss_dssp             CEECSGGGHH---HHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred             CccCCCCcHH---HHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence            6554433211   0122444445555444466666654  5566666776663

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.91  E-value=4.3e-23  Score=199.34  Aligned_cols=129  Identities=21%  Similarity=0.150  Sum_probs=107.6

Q ss_pred             ccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CCCCCCCcCeEeccccccccccc-hhhhcCCccc
Q 039007           36 RRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EIGNLKHMRYLDLSRYCQIKKLP-NSICELQSLQ  113 (360)
Q Consensus        36 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~  113 (360)
                      +++++|++++|.+   ....+..|.++++|++|++++|.++.+++ .|.++++|++|++++| .++.+| ..|.++++|+
T Consensus        52 ~~~~~LdLs~N~i---~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~  127 (635)
T 4g8a_A           52 FSTKNLDLSFNPL---RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQ  127 (635)
T ss_dssp             TTCCEEECTTSCC---CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCC
T ss_pred             cCCCEEEeeCCCC---CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCC
Confidence            4799999999997   45556779999999999999999997765 5899999999999998 456665 5689999999


Q ss_pred             eEeeccccCcCcCCccccccccccEEEEeccccccc--cccCCCCCCCcEeeccCCC
Q 039007          114 TLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQ--ESGIACLSSLRSLIISHCW  168 (360)
Q Consensus       114 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~  168 (360)
                      +|++++|.+.+..+..++.+++|++|++++|.+...  +..+..+++|+.|++++|.
T Consensus       128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             EEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence            999999865543334689999999999999988653  5677888999999888764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.91  E-value=5.3e-24  Score=191.19  Aligned_cols=276  Identities=16%  Similarity=0.099  Sum_probs=211.1

Q ss_pred             hhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CCCCCCCcCeEeccccccccccchhhhcC
Q 039007           31 LLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EIGNLKHMRYLDLSRYCQIKKLPNSICEL  109 (360)
Q Consensus        31 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l  109 (360)
                      ....|+.....+.+++.+...+    ..+  .++|++|++++|.++.++. .+..+++|++|++++|...+..+..+.++
T Consensus        26 ~~~~C~~~~~c~~~~~~l~~iP----~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (353)
T 2z80_A           26 ASLSCDRNGICKGSSGSLNSIP----SGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL   99 (353)
T ss_dssp             -CCEECTTSEEECCSTTCSSCC----TTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             cCCCCCCCeEeeCCCCCccccc----ccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCC
Confidence            3446677777888887764322    222  2579999999999997765 78999999999999985444445678999


Q ss_pred             CccceEeeccccCcCcCCcc-ccccccccEEEEeccccccccc--cCCCCCCCcEeeccCCCchhhh-HhhhcCCCCccE
Q 039007          110 QSLQTLILRGCLKLEELPKD-IRYLVSLRMFVVTTKQKSLQES--GIACLSSLRSLIISHCWNLEYL-FEHIGQLSGLRS  185 (360)
Q Consensus       110 ~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~  185 (360)
                      ++|++|++++|.. ..+|.. ++.+++|++|++++|.+...+.  .+..+++|+.|++++|..++.+ +..+..+++|++
T Consensus       100 ~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  178 (353)
T 2z80_A          100 GSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE  178 (353)
T ss_dssp             TTCCEEECCSSCC-SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred             CCCCEEECCCCcC-CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence            9999999999754 456654 8899999999999999887765  6889999999999998655544 567889999999


Q ss_pred             EEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhh-hcCC
Q 039007          186 LILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWL-LQGS  264 (360)
Q Consensus       186 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~  264 (360)
                      |++++|......+..+..+++|++|+++++.......           .....+++|+.|++++|......+..+ ....
T Consensus       179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-----------~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~  247 (353)
T 2z80_A          179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE-----------IFVDVTSSVECLELRDTDLDTFHFSELSTGET  247 (353)
T ss_dssp             EEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHH-----------HHHHHTTTEEEEEEESCBCTTCCCC------C
T ss_pred             EECCCCCcCccCHHHHhccccCCeecCCCCccccchh-----------hhhhhcccccEEECCCCccccccccccccccc
Confidence            9999998777778889999999999999986432111           012235789999999987554322211 1135


Q ss_pred             CCCCcEEecccCCCcc----cccccccCccccccccccccccccCCCcc-ccCCCccceecccCCh
Q 039007          265 TKTLQFLGIEDCPNFM----ALQGSLKDLEALETLLISACRKLSSLPED-IHHLTTLKTLSIKECP  325 (360)
Q Consensus       265 ~~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~c~  325 (360)
                      .+.++.++++++....    .+|..+..+++|++|++++|++. .+|.. +..+++|++|++++|+
T Consensus       248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence            6778889988875433    56778899999999999999865 66666 4789999999999985

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.90  E-value=7.2e-23  Score=189.90  Aligned_cols=231  Identities=20%  Similarity=0.162  Sum_probs=176.6

Q ss_pred             cccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcC-CC
Q 039007            5 DCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPRE-IG   83 (360)
Q Consensus         5 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~   83 (360)
                      .+..+|++++.|++.++.+.. .....|.++++|++|++++|.+   ....+..|.++++|++|++++|.++.+|.. +.
T Consensus        69 iP~~~~~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  144 (452)
T 3zyi_A           69 VPQGIPSNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSI---RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE  144 (452)
T ss_dssp             CCSCCCTTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCC---CEECTTTTTTCTTCCEEECCSSCCSBCCTTTSS
T ss_pred             cCCCCCCCccEEECcCCcCce-ECHHHcCCCCCCCEEECCCCcc---CCcChhhccCcccCCEEECCCCcCCccChhhhc
Confidence            355677888999998888877 5566788889999999998886   444556688888899999998888866654 77


Q ss_pred             CCCCcCeEeccccccccccc-hhhhcCCccceEeeccccCcCcCCc-cccccccccEEEEeccccccccccCCCCCCCcE
Q 039007           84 NLKHMRYLDLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELPK-DIRYLVSLRMFVVTTKQKSLQESGIACLSSLRS  161 (360)
Q Consensus        84 ~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~  161 (360)
                      .+++|++|++++|. +..++ ..+.++++|+.|++++|...+.++. .+..+++|+.|++++|.+...+ .+..+++|+.
T Consensus       145 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~  222 (452)
T 3zyi_A          145 YLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEE  222 (452)
T ss_dssp             SCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCE
T ss_pred             ccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccE
Confidence            88889999998874 44444 4677888999999988767766664 4778888999999888887764 5778888889


Q ss_pred             eeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCc
Q 039007          162 LIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTH  241 (360)
Q Consensus       162 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (360)
                      |++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|.....           ....+..+++
T Consensus       223 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------~~~~~~~l~~  291 (452)
T 3zyi_A          223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL-----------PHDLFTPLRY  291 (452)
T ss_dssp             EECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC-----------CTTSSTTCTT
T ss_pred             EECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc-----------ChHHhccccC
Confidence            98888866666677788888888888888876666667778888888888888754321           1223445677


Q ss_pred             cceEEecCccC
Q 039007          242 LQKLFVSGLKQ  252 (360)
Q Consensus       242 L~~L~L~~~~~  252 (360)
                      |+.|+|++|..
T Consensus       292 L~~L~L~~Np~  302 (452)
T 3zyi_A          292 LVELHLHHNPW  302 (452)
T ss_dssp             CCEEECCSSCE
T ss_pred             CCEEEccCCCc
Confidence            88888887753

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.90  E-value=8.2e-23  Score=188.89  Aligned_cols=232  Identities=18%  Similarity=0.138  Sum_probs=183.1

Q ss_pred             ccccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CC
Q 039007            4 SDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EI   82 (360)
Q Consensus         4 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~   82 (360)
                      ..+..+|+.++.|++.++.+.. .....|.++++|++|++++|.+   ....+..|.++++|++|++++|.++.++. .+
T Consensus        57 ~iP~~~~~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i---~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  132 (440)
T 3zyj_A           57 EVPDGISTNTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHI---RTIEIGAFNGLANLNTLELFDNRLTTIPNGAF  132 (440)
T ss_dssp             SCCSCCCTTCSEEECCSCCCCE-ECTTTTSSCSSCCEEECCSSCC---CEECGGGGTTCSSCCEEECCSSCCSSCCTTTS
T ss_pred             cCCCCCCCCCcEEEccCCcCCe-eCHHHhhCCCCCCEEECCCCcC---CccChhhccCCccCCEEECCCCcCCeeCHhHh
Confidence            3456678889999999998877 5567789999999999999987   44455678889999999999999887765 58


Q ss_pred             CCCCCcCeEeccccccccccc-hhhhcCCccceEeeccccCcCcCCc-cccccccccEEEEeccccccccccCCCCCCCc
Q 039007           83 GNLKHMRYLDLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELPK-DIRYLVSLRMFVVTTKQKSLQESGIACLSSLR  160 (360)
Q Consensus        83 ~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~  160 (360)
                      ..+++|++|++++|. +..++ ..+..+++|+.|++++|...+.++. .+..+++|+.|++++|.+..++ .+..+++|+
T Consensus       133 ~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~  210 (440)
T 3zyj_A          133 VYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLD  210 (440)
T ss_dssp             CSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCC
T ss_pred             hccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccC
Confidence            889999999999884 44444 5678899999999998767766664 5788999999999999888775 578888999


Q ss_pred             EeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCC
Q 039007          161 SLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRT  240 (360)
Q Consensus       161 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (360)
                      .|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|.....           ....+..++
T Consensus       211 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------~~~~~~~l~  279 (440)
T 3zyj_A          211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL-----------PHDLFTPLH  279 (440)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC-----------CTTTTSSCT
T ss_pred             EEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc-----------ChhHhcccc
Confidence            999999866555577788899999999999876666667788889999999988754321           122345567


Q ss_pred             ccceEEecCccC
Q 039007          241 HLQKLFVSGLKQ  252 (360)
Q Consensus       241 ~L~~L~L~~~~~  252 (360)
                      +|+.|+|++|..
T Consensus       280 ~L~~L~L~~Np~  291 (440)
T 3zyj_A          280 HLERIHLHHNPW  291 (440)
T ss_dssp             TCCEEECCSSCE
T ss_pred             CCCEEEcCCCCc
Confidence            888888888763

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.90  E-value=1.1e-24  Score=192.76  Aligned_cols=247  Identities=14%  Similarity=0.097  Sum_probs=130.9

Q ss_pred             hhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcC
Q 039007           30 SLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICEL  109 (360)
Q Consensus        30 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l  109 (360)
                      ..+..+++|++|++++|.+   ....+..+.++++|++|++++|.++..++ +..+++|++|++++| .++.++    ..
T Consensus        28 ~~~~~~~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~----~~   98 (317)
T 3o53_A           28 SLRQSAWNVKELDLSGNPL---SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL----VG   98 (317)
T ss_dssp             HHHTTGGGCSEEECTTSCC---CCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEE----EC
T ss_pred             HHhccCCCCCEEECcCCcc---CcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-cccccc----CC
Confidence            3445556677777776665   33444556666677777776666664433 666666667766665 333333    23


Q ss_pred             CccceEeeccccCcCcCCccccccccccEEEEeccccccc-cccCCCCCCCcEeeccCCCchhhhHhhh-cCCCCccEEE
Q 039007          110 QSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQ-ESGIACLSSLRSLIISHCWNLEYLFEHI-GQLSGLRSLI  187 (360)
Q Consensus       110 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~  187 (360)
                      ++|+.|++++|.+.+ ++  ...+++|+.|++++|.+... +..+..+++|+.|++++|......+..+ ..+++|++|+
T Consensus        99 ~~L~~L~l~~n~l~~-~~--~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~  175 (317)
T 3o53_A           99 PSIETLHAANNNISR-VS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN  175 (317)
T ss_dssp             TTCCEEECCSSCCSE-EE--ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred             CCcCEEECCCCccCC-cC--ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence            566666666653332 22  12245566666666655544 2344555555555555554333222222 2445555555


Q ss_pred             eccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCC
Q 039007          188 LVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKT  267 (360)
Q Consensus       188 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~  267 (360)
                      +++|.. +.++. ...+++                                   |+.|++++|.. ..++..+  ..+++
T Consensus       176 L~~N~l-~~~~~-~~~l~~-----------------------------------L~~L~Ls~N~l-~~l~~~~--~~l~~  215 (317)
T 3o53_A          176 LQYNFI-YDVKG-QVVFAK-----------------------------------LKTLDLSSNKL-AFMGPEF--QSAAG  215 (317)
T ss_dssp             CTTSCC-CEEEC-CCCCTT-----------------------------------CCEEECCSSCC-CEECGGG--GGGTT
T ss_pred             CCCCcC-ccccc-cccccc-----------------------------------CCEEECCCCcC-Ccchhhh--cccCc
Confidence            555532 22221 112444                                   55555554432 2333333  45566


Q ss_pred             CcEEecccCCCcccccccccCccccccccccccccc-cCCCccccCCCccceecccCChhHHh
Q 039007          268 LQFLGIEDCPNFMALQGSLKDLEALETLLISACRKL-SSLPEDIHHLTTLKTLSIKECPALWE  329 (360)
Q Consensus       268 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~c~~~~~  329 (360)
                      |++|++++| .++.+|..+..+++|+.|++++|++. ..++..+..++.|+.+++.+|+.++.
T Consensus       216 L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~  277 (317)
T 3o53_A          216 VTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG  277 (317)
T ss_dssp             CSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred             ccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence            666666665 34455555666666666666666655 34455555666666666665555553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.90  E-value=1.1e-22  Score=177.13  Aligned_cols=266  Identities=16%  Similarity=0.117  Sum_probs=194.7

Q ss_pred             cEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC-cCCCCCCCcCeEeccccccccccchhhhcCCccceEee
Q 039007           39 RTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-REIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLIL  117 (360)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  117 (360)
                      ++++.+++.+...    |.  .-.++|++|+++++.++.++ ..+..+++|++|++++|...+..+..+..+++|++|++
T Consensus        14 ~~~~c~~~~l~~i----p~--~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   87 (285)
T 1ozn_A           14 VTTSCPQQGLQAV----PV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL   87 (285)
T ss_dssp             CEEECCSSCCSSC----CT--TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             eEEEcCcCCcccC----Cc--CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence            5778877765322    21  22468999999999999665 46899999999999998544444778899999999999


Q ss_pred             ccccCcCcC-CccccccccccEEEEeccccccc-cccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCc
Q 039007          118 RGCLKLEEL-PKDIRYLVSLRMFVVTTKQKSLQ-ESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLI  195 (360)
Q Consensus       118 ~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  195 (360)
                      ++|.....+ |..+..+++|+.|++++|.+... +..+..+++|++|++++|......+..++.+++|+.|++++|....
T Consensus        88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  167 (285)
T 1ozn_A           88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS  167 (285)
T ss_dssp             CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence            998645555 67789999999999999998876 5678899999999999986554444568889999999999996544


Q ss_pred             ccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEeccc
Q 039007          196 SLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIED  275 (360)
Q Consensus       196 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~  275 (360)
                      ..+..+..+++|++|++++|.....           .+.....+++|+.|++++|......+..+  ..+++|++|++++
T Consensus       168 ~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~  234 (285)
T 1ozn_A          168 VPERAFRGLHSLDRLLLHQNRVAHV-----------HPHAFRDLGRLMTLYLFANNLSALPTEAL--APLRALQYLRLND  234 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEE-----------CTTTTTTCTTCCEEECCSSCCSCCCHHHH--TTCTTCCEEECCS
T ss_pred             cCHHHhcCccccCEEECCCCccccc-----------CHhHccCcccccEeeCCCCcCCcCCHHHc--ccCcccCEEeccC
Confidence            3344588899999999999864432           12334567789999999887555444445  7888999999998


Q ss_pred             CCCcccccccccCccccccccccccccccCCCccccC--CCccceecccCC
Q 039007          276 CPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHH--LTTLKTLSIKEC  324 (360)
Q Consensus       276 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~c  324 (360)
                      |....+.+. ..-...++.+....+......|..+..  +..++..++.+|
T Consensus       235 N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C  284 (285)
T 1ozn_A          235 NPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC  284 (285)
T ss_dssp             SCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred             CCccCCCCc-HHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence            854443322 111234566666665555555655433  456666677776

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.90  E-value=2.4e-25  Score=207.19  Aligned_cols=305  Identities=16%  Similarity=0.124  Sum_probs=165.9

Q ss_pred             CcceEEEeeecccccc---chhhhhccCccccEEEEeccCCCCcccchHHHhhcCC----CccEEEEeCCCCc-----cc
Q 039007           11 KRVRHLSFVSASASRN---DFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQ----FLRVLDLDDSTIE-----VL   78 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~----~L~~L~l~~~~~~-----~~   78 (360)
                      ++++.|++.++.+...   .+...+..+++|++|++++|.+.  ...+...+..++    +|++|++++|.++     .+
T Consensus        28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~--~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l  105 (461)
T 1z7x_W           28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG--DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL  105 (461)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH--HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC--hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence            5788888888887753   34566777888888888888763  223334444555    6888888888876     34


Q ss_pred             CcCCCCCCCcCeEeccccccccccchhhh-----cCCccceEeeccccCcCc----CCccccccccccEEEEeccccccc
Q 039007           79 PREIGNLKHMRYLDLSRYCQIKKLPNSIC-----ELQSLQTLILRGCLKLEE----LPKDIRYLVSLRMFVVTTKQKSLQ  149 (360)
Q Consensus        79 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~~~  149 (360)
                      +..+..+++|++|++++|......+..+.     ..++|++|++++|.....    ++..+..+++|++|++++|.+...
T Consensus       106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  185 (461)
T 1z7x_W          106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA  185 (461)
T ss_dssp             HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence            66778888888888887753332232222     245677777777654432    234445566777777776665432


Q ss_pred             -cccCC-----CCCCCcEeeccCCCchh----hhHhhhcCCCCccEEEeccCCCCc------------------------
Q 039007          150 -ESGIA-----CLSSLRSLIISHCWNLE----YLFEHIGQLSGLRSLILVDCPSLI------------------------  195 (360)
Q Consensus       150 -~~~~~-----~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~------------------------  195 (360)
                       ...+.     ..++|+.|++++|....    .++..+..+++|++|++++|....                        
T Consensus       186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~  265 (461)
T 1z7x_W          186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE  265 (461)
T ss_dssp             HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence             11111     23455555555553322    234444445555555555553221                        


Q ss_pred             -----c----cCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCC----chhhhhc
Q 039007          196 -----S----LPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLD----LPQWLLQ  262 (360)
Q Consensus       196 -----~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~----~~~~~~~  262 (360)
                           .    ++..+..+++|++|++++|....... ..+.     .......++|+.|++++|.....    ++..+  
T Consensus       266 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~-~~l~-----~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l--  337 (461)
T 1z7x_W          266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA-RLLC-----ETLLEPGCQLESLWVKSCSFTAACCSHFSSVL--  337 (461)
T ss_dssp             SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH-HHHH-----HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH--
T ss_pred             CCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH-HHHH-----HHhccCCccceeeEcCCCCCchHHHHHHHHHH--
Confidence                 1    23333334444444444442111000 0000     00011223666666666654332    23333  


Q ss_pred             CCCCCCcEEecccCCCccccccccc----C-cccccccccccccccc----CCCccccCCCccceecccCCh
Q 039007          263 GSTKTLQFLGIEDCPNFMALQGSLK----D-LEALETLLISACRKLS----SLPEDIHHLTTLKTLSIKECP  325 (360)
Q Consensus       263 ~~~~~L~~L~L~~~~~~~~~~~~~~----~-l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~c~  325 (360)
                      ..+++|++|++++|......+..+.    . .++|++|++++|.+..    .++..+..+++|++|++++|+
T Consensus       338 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          338 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             hhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            3556777777777643322222222    1 5577777777776553    455556667777777777774

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.90  E-value=2.9e-22  Score=185.36  Aligned_cols=275  Identities=19%  Similarity=0.208  Sum_probs=163.9

Q ss_pred             CcceEEEeeeccccccchhhhhccC-ccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcC
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDL-RRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMR   89 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~   89 (360)
                      ++++.|++.+|.+..      +... ++|++|++++|.+..    ++ .+.++++|++|++++|.++.+|..+   .+|+
T Consensus       111 ~~L~~L~l~~n~l~~------l~~~~~~L~~L~L~~n~l~~----lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~  176 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKA------LSDLPPLLEYLGVSNNQLEK----LP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLE  176 (454)
T ss_dssp             TTCCEEECCSSCCSC------CCSCCTTCCEEECCSSCCSS----CC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCC
T ss_pred             CCCcEEECCCCccCc------ccCCCCCCCEEECcCCCCCC----Cc-ccCCCCCCCEEECCCCcCcccCCCc---cccc
Confidence            445555555554443      1122 578888888887632    33 3778888888888888887776543   4788


Q ss_pred             eEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCc
Q 039007           90 YLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWN  169 (360)
Q Consensus        90 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~  169 (360)
                      +|++++| .+..+| .++.+++|+.|++++|... .+|...   ++|+.|++++|.+..++ .+..+++|+.|++++|..
T Consensus       177 ~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N~l~-~l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l  249 (454)
T 1jl5_A          177 FIAAGNN-QLEELP-ELQNLPFLTAIYADNNSLK-KLPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLL  249 (454)
T ss_dssp             EEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC
T ss_pred             EEECcCC-cCCcCc-cccCCCCCCEEECCCCcCC-cCCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcC
Confidence            8888877 455566 4778888888888877433 355432   47788888888777665 477788888888887643


Q ss_pred             hhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCcccccc------ccccCCCCCCCCCCCC-Ccc
Q 039007          170 LEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLN------IEMEGEGSHHDRDNTR-THL  242 (360)
Q Consensus       170 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~L  242 (360)
                       +.+|.   .+++|+.|++++|.. ..+|..   +++|++|++++|........      ..+.+.  ........ ++|
T Consensus       250 -~~l~~---~~~~L~~L~l~~N~l-~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N--~l~~i~~~~~~L  319 (454)
T 1jl5_A          250 -KTLPD---LPPSLEALNVRDNYL-TDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSN--EIRSLCDLPPSL  319 (454)
T ss_dssp             -SSCCS---CCTTCCEEECCSSCC-SCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSS--CCSEECCCCTTC
T ss_pred             -Ccccc---cccccCEEECCCCcc-cccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCC--cCCcccCCcCcC
Confidence             33332   246777777777643 334443   35677777766643321100      000000  00001112 478


Q ss_pred             ceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCcccccccccccccccc--CCCccccCC-------
Q 039007          243 QKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLS--SLPEDIHHL-------  313 (360)
Q Consensus       243 ~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~-------  313 (360)
                      +.|++++|... .+|.     .+++|++|++++| .++.+|.   .+++|++|++++|++.+  .+|..+..+       
T Consensus       320 ~~L~Ls~N~l~-~lp~-----~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~  389 (454)
T 1jl5_A          320 EELNVSNNKLI-ELPA-----LPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLA  389 (454)
T ss_dssp             CEEECCSSCCS-CCCC-----CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---
T ss_pred             CEEECCCCccc-cccc-----cCCcCCEEECCCC-ccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccccc
Confidence            88888887643 3443     3578888888887 4556666   46788888888888776  677777666       


Q ss_pred             ------CccceecccCChh
Q 039007          314 ------TTLKTLSIKECPA  326 (360)
Q Consensus       314 ------~~L~~L~l~~c~~  326 (360)
                            ++|++|++++|+-
T Consensus       390 ~i~~~~~~L~~L~ls~N~l  408 (454)
T 1jl5_A          390 EVPELPQNLKQLHVETNPL  408 (454)
T ss_dssp             -------------------
T ss_pred             ccccccCcCCEEECCCCcC
Confidence                  7788888888753

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.89  E-value=1.1e-21  Score=181.57  Aligned_cols=275  Identities=20%  Similarity=0.213  Sum_probs=179.8

Q ss_pred             CCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCC
Q 039007            8 SIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKH   87 (360)
Q Consensus         8 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~   87 (360)
                      .+|++++.|++.++.+++  ++.   .+++|++|++++|.+......       .++|++|++++|.++.+| .+..+++
T Consensus        88 ~~~~~L~~L~l~~n~l~~--lp~---~~~~L~~L~l~~n~l~~l~~~-------~~~L~~L~L~~n~l~~lp-~~~~l~~  154 (454)
T 1jl5_A           88 ELPPHLESLVASCNSLTE--LPE---LPQSLKSLLVDNNNLKALSDL-------PPLLEYLGVSNNQLEKLP-ELQNSSF  154 (454)
T ss_dssp             SCCTTCSEEECCSSCCSS--CCC---CCTTCCEEECCSSCCSCCCSC-------CTTCCEEECCSSCCSSCC-CCTTCTT
T ss_pred             CCcCCCCEEEccCCcCCc--ccc---ccCCCcEEECCCCccCcccCC-------CCCCCEEECcCCCCCCCc-ccCCCCC
Confidence            366788888888887776  222   247888888888876422111       157889999988888877 5888889


Q ss_pred             cCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCC
Q 039007           88 MRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHC  167 (360)
Q Consensus        88 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~  167 (360)
                      |++|++++| .++.+|..+   .+|++|++++|... .+| .++.+++|+.|++++|.+...+..   .++|+.|++++|
T Consensus       155 L~~L~l~~N-~l~~lp~~~---~~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n  225 (454)
T 1jl5_A          155 LKIIDVDNN-SLKKLPDLP---PSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNN  225 (454)
T ss_dssp             CCEEECCSS-CCSCCCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSS
T ss_pred             CCEEECCCC-cCcccCCCc---ccccEEECcCCcCC-cCc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCC
Confidence            999999887 455566533   58889999887444 466 588888999999998888765432   258889999887


Q ss_pred             CchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccc------cccCCCCCCCCCCCCCc
Q 039007          168 WNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNI------EMEGEGSHHDRDNTRTH  241 (360)
Q Consensus       168 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~  241 (360)
                      .. +.+| .++.+++|+.|++++|.. ..+|..   +++|++|++++|.........      .+.+- .........++
T Consensus       226 ~l-~~lp-~~~~l~~L~~L~l~~N~l-~~l~~~---~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N-~l~~l~~~~~~  298 (454)
T 1jl5_A          226 IL-EELP-ELQNLPFLTTIYADNNLL-KTLPDL---PPSLEALNVRDNYLTDLPELPQSLTFLDVSEN-IFSGLSELPPN  298 (454)
T ss_dssp             CC-SSCC-CCTTCTTCCEEECCSSCC-SSCCSC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSEESCCCTT
T ss_pred             cC-Cccc-ccCCCCCCCEEECCCCcC-Cccccc---ccccCEEECCCCcccccCcccCcCCEEECcCC-ccCcccCcCCc
Confidence            44 4566 377889999999988854 345543   478999999887643311100      00000 00000001134


Q ss_pred             cceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecc
Q 039007          242 LQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSI  321 (360)
Q Consensus       242 L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  321 (360)
                      |+.|++++|... .++     ...++|++|++++|. ++.+|..   +++|++|++++|.+. .+|.   .+++|++|++
T Consensus       299 L~~L~l~~N~l~-~i~-----~~~~~L~~L~Ls~N~-l~~lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L  364 (454)
T 1jl5_A          299 LYYLNASSNEIR-SLC-----DLPPSLEELNVSNNK-LIELPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHV  364 (454)
T ss_dssp             CCEEECCSSCCS-EEC-----CCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEEC
T ss_pred             CCEEECcCCcCC-ccc-----CCcCcCCEEECCCCc-ccccccc---CCcCCEEECCCCccc-cccc---hhhhccEEEC
Confidence            455555544322 111     122578888888774 4445543   578888888888744 5666   3688999999


Q ss_pred             cCCh
Q 039007          322 KECP  325 (360)
Q Consensus       322 ~~c~  325 (360)
                      ++|+
T Consensus       365 ~~N~  368 (454)
T 1jl5_A          365 EYNP  368 (454)
T ss_dssp             CSSC
T ss_pred             CCCC
Confidence            8884

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.89  E-value=9.6e-24  Score=186.59  Aligned_cols=243  Identities=13%  Similarity=0.082  Sum_probs=187.2

Q ss_pred             CCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCc
Q 039007            9 IPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHM   88 (360)
Q Consensus         9 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L   88 (360)
                      .+++++.|++.++.+.. ..+..+.++++|++|++++|.+.   ...+  +..+++|++|++++|.++.++.    +++|
T Consensus        32 ~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~---~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L  101 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLY---ETLD--LESLSTLRTLDLNNNYVQELLV----GPSI  101 (317)
T ss_dssp             TGGGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCE---EEEE--ETTCTTCCEEECCSSEEEEEEE----CTTC
T ss_pred             cCCCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCC---cchh--hhhcCCCCEEECcCCccccccC----CCCc
Confidence            35689999999999988 56678999999999999999873   2332  8899999999999999886653    3899


Q ss_pred             CeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccc-cccC-CCCCCCcEeeccC
Q 039007           89 RYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQ-ESGI-ACLSSLRSLIISH  166 (360)
Q Consensus        89 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~-~~l~~L~~L~l~~  166 (360)
                      ++|++++|. +..++.  ..+++|+.|++++|...+..+..++.+++|+.|++++|.+... +..+ ..+++|+.|++++
T Consensus       102 ~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~  178 (317)
T 3o53_A          102 ETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (317)
T ss_dssp             CEEECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             CEEECCCCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence            999999984 444443  2378999999999866655556788999999999999998765 3444 4789999999999


Q ss_pred             CCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEE
Q 039007          167 CWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLF  246 (360)
Q Consensus       167 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  246 (360)
                      |.. +.++. ...+++|++|++++|.. ..++..+..+++|+.|++++|.                              
T Consensus       179 N~l-~~~~~-~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~L~~N~------------------------------  225 (317)
T 3o53_A          179 NFI-YDVKG-QVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNK------------------------------  225 (317)
T ss_dssp             SCC-CEEEC-CCCCTTCCEEECCSSCC-CEECGGGGGGTTCSEEECTTSC------------------------------
T ss_pred             CcC-ccccc-ccccccCCEEECCCCcC-CcchhhhcccCcccEEECcCCc------------------------------
Confidence            854 33332 34589999999999854 4566667777777887777653                              


Q ss_pred             ecCccCCCCchhhhhcCCCCCCcEEecccCCCc-ccccccccCccccccccccccccccC
Q 039007          247 VSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNF-MALQGSLKDLEALETLLISACRKLSS  305 (360)
Q Consensus       247 L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~  305 (360)
                            +..+|..+  ..+++|++|++++|... ..++..+..+++|+.+++.++..++.
T Consensus       226 ------l~~l~~~~--~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~  277 (317)
T 3o53_A          226 ------LVLIEKAL--RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG  277 (317)
T ss_dssp             ------CCEECTTC--CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred             ------ccchhhHh--hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence                  22344444  66788888888888666 46777788889999999987765543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.89  E-value=1.6e-21  Score=186.05  Aligned_cols=256  Identities=22%  Similarity=0.216  Sum_probs=185.9

Q ss_pred             cceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeE
Q 039007           12 RVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYL   91 (360)
Q Consensus        12 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L   91 (360)
                      .++.|++.++.+..  ++..+.  ++|++|++++|.+..    ++.   .+++|++|++++|.++.+|.   .+++|++|
T Consensus        41 ~l~~L~ls~n~L~~--lp~~l~--~~L~~L~L~~N~l~~----lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L  106 (622)
T 3g06_A           41 GNAVLNVGESGLTT--LPDCLP--AHITTLVIPDNNLTS----LPA---LPPELRTLEVSGNQLTSLPV---LPPGLLEL  106 (622)
T ss_dssp             CCCEEECCSSCCSC--CCSCCC--TTCSEEEECSCCCSC----CCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEE
T ss_pred             CCcEEEecCCCcCc--cChhhC--CCCcEEEecCCCCCC----CCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEE
Confidence            57888888888775  333343  788999999888642    222   46788999999988888776   66888999


Q ss_pred             eccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchh
Q 039007           92 DLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLE  171 (360)
Q Consensus        92 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  171 (360)
                      ++++| .+..+|.   .+++|+.|++++|. +..+|..   +++|++|++++|.+..++.   .+++|+.|++.+|. ++
T Consensus       107 ~Ls~N-~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~-l~  174 (622)
T 3g06_A          107 SIFSN-PLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQ-LT  174 (622)
T ss_dssp             EECSC-CCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CS
T ss_pred             ECcCC-cCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCC-CC
Confidence            99887 5556665   56788889998874 4456654   4788899998888776653   35678888888864 34


Q ss_pred             hhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCcc
Q 039007          172 YLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLK  251 (360)
Q Consensus       172 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  251 (360)
                      .++   ..+++|+.|++++|.. ..+|..   .++|+.|++.+|......               ...++|+.|++++|.
T Consensus       175 ~l~---~~~~~L~~L~Ls~N~l-~~l~~~---~~~L~~L~L~~N~l~~l~---------------~~~~~L~~L~Ls~N~  232 (622)
T 3g06_A          175 SLP---MLPSGLQELSVSDNQL-ASLPTL---PSELYKLWAYNNRLTSLP---------------ALPSGLKELIVSGNR  232 (622)
T ss_dssp             CCC---CCCTTCCEEECCSSCC-SCCCCC---CTTCCEEECCSSCCSSCC---------------CCCTTCCEEECCSSC
T ss_pred             CCc---ccCCCCcEEECCCCCC-CCCCCc---cchhhEEECcCCcccccC---------------CCCCCCCEEEccCCc
Confidence            444   4568889999988753 445543   478888888887543211               123678899998875


Q ss_pred             CCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCChh
Q 039007          252 QLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPA  326 (360)
Q Consensus       252 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  326 (360)
                       +..+|     ..+++|++|++++| .++.+|.   .+++|+.|++++|.+. .+|..+..+++|+.|++++|+-
T Consensus       233 -L~~lp-----~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          233 -LTSLP-----VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             -CSCCC-----CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCC
T ss_pred             -cCcCC-----CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCC
Confidence             44455     45688999999988 5566665   5678899999988755 7788888889999999988853

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.88  E-value=8.3e-24  Score=186.58  Aligned_cols=245  Identities=17%  Similarity=0.130  Sum_probs=133.3

Q ss_pred             hccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCc--ccCcCCC-------CCCCcCeEecccccccccc
Q 039007           32 LSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIE--VLPREIG-------NLKHMRYLDLSRYCQIKKL  102 (360)
Q Consensus        32 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~-------~l~~L~~L~l~~~~~~~~~  102 (360)
                      +...++|+.|++++|.+ .....+    ...  |+.|+++++.+.  .+|..+.       .+++|++|++++|...+.+
T Consensus        39 ~~~~~~L~~l~l~~n~l-~~p~~~----~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  111 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE-ADLGQF----TDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTA  111 (312)
T ss_dssp             EEEEEECTTHHHHCCTT-CCCHHH----HHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCC
T ss_pred             EccCCCceeEeeccccc-ccHHHH----HHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchh
Confidence            34455566666666654 112112    111  556666666553  3444333       5667777777766544455


Q ss_pred             chhh--hcCCccceEeeccccCcCcCCcccccc-----ccccEEEEecccccccc-ccCCCCCCCcEeeccCCCchhh--
Q 039007          103 PNSI--CELQSLQTLILRGCLKLEELPKDIRYL-----VSLRMFVVTTKQKSLQE-SGIACLSSLRSLIISHCWNLEY--  172 (360)
Q Consensus       103 ~~~~--~~l~~L~~L~l~~~~~~~~~p~~~~~l-----~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~--  172 (360)
                      |..+  ..+++|++|++++|.+.+. |..++.+     ++|++|++++|.+...+ ..+..+++|+.|++++|...+.  
T Consensus       112 ~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  190 (312)
T 1wwl_A          112 PPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG  190 (312)
T ss_dssp             CCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred             HHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH
Confidence            5544  5667777777776644433 5555555     66777777777666553 5566677777777776654332  


Q ss_pred             hHhhh--cCCCCccEEEeccCCCCc--ccC-cccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEe
Q 039007          173 LFEHI--GQLSGLRSLILVDCPSLI--SLP-SAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFV  247 (360)
Q Consensus       173 ~~~~l--~~l~~L~~L~l~~~~~~~--~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  247 (360)
                      ++..+  ..+++|++|++++|....  .++ ..+..+++|++|++++|.                               
T Consensus       191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-------------------------------  239 (312)
T 1wwl_A          191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-------------------------------  239 (312)
T ss_dssp             HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-------------------------------
T ss_pred             HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-------------------------------
Confidence            23333  566666666666664321  111 122345555666555543                               


Q ss_pred             cCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCCh
Q 039007          248 SGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECP  325 (360)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~  325 (360)
                          .....+.... ..+++|++|++++|. ++.+|..+.  ++|++|++++|++. .+|. +..+++|++|++++|+
T Consensus       240 ----l~~~~~~~~~-~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l~-~~p~-~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          240 ----LRDAAGAPSC-DWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNRLD-RNPS-PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             ----CCSSCCCSCC-CCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSCCC-SCCC-TTTSCEEEEEECTTCT
T ss_pred             ----CCcccchhhh-hhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCCCCC-CChh-HhhCCCCCEEeccCCC
Confidence                2222211110 334666666666663 345555444  56666666666543 3344 5566667777666664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.88  E-value=7.8e-23  Score=180.34  Aligned_cols=241  Identities=14%  Similarity=0.082  Sum_probs=169.7

Q ss_pred             ceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhh-------cCCCccEEEEeCCCCc-ccCcCC--
Q 039007           13 VRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCIS-------KSQFLRVLDLDDSTIE-VLPREI--   82 (360)
Q Consensus        13 l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~~~-~~~~~~--   82 (360)
                      ++.|++.++.+   .++..+...  |++|++++|.+.  ...++..+.       ++++|++|++++|.++ .+|..+  
T Consensus        45 L~~l~l~~n~l---~~p~~~~~~--L~~L~L~~n~l~--~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           45 LEYLLKRVDTE---ADLGQFTDI--IKSLSLKRLTVR--AARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             CTTHHHHCCTT---CCCHHHHHH--HHHCCCCEEEEE--EEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             ceeEeeccccc---ccHHHHHHH--Hhhccccccccc--CCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            34444445555   123334333  888888888763  112333333       6899999999999998 778776  


Q ss_pred             CCCCCcCeEeccccccccccchhhhcC-----CccceEeeccccCcCcCCccccccccccEEEEeccccccc---cccC-
Q 039007           83 GNLKHMRYLDLSRYCQIKKLPNSICEL-----QSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQ---ESGI-  153 (360)
Q Consensus        83 ~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~---~~~~-  153 (360)
                      ..+++|++|++++|. ++..|..+..+     ++|++|++++|.+.+..|..++.+++|++|++++|.+...   +..+ 
T Consensus       118 ~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            899999999999985 44447777776     9999999999876665568899999999999999986532   2333 


Q ss_pred             -CCCCCCcEeeccCCCchh--hhH-hhhcCCCCccEEEeccCCCCcccC-cccCCCCCCCEEeecCCcCccccccccccC
Q 039007          154 -ACLSSLRSLIISHCWNLE--YLF-EHIGQLSGLRSLILVDCPSLISLP-SAVKCLSSSETLILIDCKSLNLNLNIEMEG  228 (360)
Q Consensus       154 -~~l~~L~~L~l~~~~~~~--~~~-~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  228 (360)
                       ..+++|++|++++|....  .++ ..+..+++|+.|++++|......| ..+..+++|++|++++|..           
T Consensus       197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l-----------  265 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-----------  265 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC-----------
T ss_pred             hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc-----------
Confidence             889999999999986542  333 344678999999999997655443 3344556677776666532           


Q ss_pred             CCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccc
Q 039007          229 EGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKL  303 (360)
Q Consensus       229 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  303 (360)
                                               ..+|..+  .  ++|++|++++| .++.+|. +..+++|++|++++|++.
T Consensus       266 -------------------------~~ip~~~--~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          266 -------------------------KQVPKGL--P--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             -------------------------SSCCSSC--C--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred             -------------------------Chhhhhc--c--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCCCC
Confidence                                     2344333  1  66777777776 4455555 777788888888887754

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=1e-22  Score=190.24  Aligned_cols=234  Identities=13%  Similarity=0.055  Sum_probs=124.5

Q ss_pred             ccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceE
Q 039007           36 RRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTL  115 (360)
Q Consensus        36 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  115 (360)
                      ++|++|++++|.+   ....+..|..+++|++|++++|.++..++ +..+++|++|++++| .++.+|.    .++|+.|
T Consensus        34 ~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L  104 (487)
T 3oja_A           34 WNVKELDLSGNPL---SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIETL  104 (487)
T ss_dssp             GGCCEEECCSSCC---CCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTCCEE
T ss_pred             CCccEEEeeCCcC---CCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCcCEE
Confidence            3677777777765   33444556777777777777777664433 667777777777766 3444332    2667777


Q ss_pred             eeccccCcCcCCccccccccccEEEEeccccccc-cccCCCCCCCcEeeccCCCchhhhHhhhc-CCCCccEEEeccCCC
Q 039007          116 ILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQ-ESGIACLSSLRSLIISHCWNLEYLFEHIG-QLSGLRSLILVDCPS  193 (360)
Q Consensus       116 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~  193 (360)
                      ++++|.+.+..+   ..+++|+.|++++|.+... +..++.+++|+.|++++|......+..+. .+++|+.|++++|..
T Consensus       105 ~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          105 HAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             ECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             ECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence            777664433221   2345666666666666554 34555666666666666654444444443 466666666666643


Q ss_pred             CcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEec
Q 039007          194 LISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGI  273 (360)
Q Consensus       194 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L  273 (360)
                      . .++. ...+++|++|++++|......            .....+++|+.|++++|... .+|..+  ..+++|+.|++
T Consensus       182 ~-~~~~-~~~l~~L~~L~Ls~N~l~~~~------------~~~~~l~~L~~L~Ls~N~l~-~lp~~l--~~l~~L~~L~l  244 (487)
T 3oja_A          182 Y-DVKG-QVVFAKLKTLDLSSNKLAFMG------------PEFQSAAGVTWISLRNNKLV-LIEKAL--RFSQNLEHFDL  244 (487)
T ss_dssp             C-EEEC-CCCCTTCCEEECCSSCCCEEC------------GGGGGGTTCSEEECTTSCCC-EECTTC--CCCTTCCEEEC
T ss_pred             c-cccc-cccCCCCCEEECCCCCCCCCC------------HhHcCCCCccEEEecCCcCc-ccchhh--ccCCCCCEEEc
Confidence            2 2222 223556666666555422211            11223344555555554422 344333  44455555555


Q ss_pred             ccCCCc-ccccccccCcccccccccc
Q 039007          274 EDCPNF-MALQGSLKDLEALETLLIS  298 (360)
Q Consensus       274 ~~~~~~-~~~~~~~~~l~~L~~L~l~  298 (360)
                      ++|... ..+|..+..++.|+.+++.
T Consensus       245 ~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          245 RGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             TTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCcCcchHHHHHhCCCCcEEecc
Confidence            554333 1334444444455544444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.87  E-value=1.8e-23  Score=200.58  Aligned_cols=314  Identities=12%  Similarity=0.077  Sum_probs=183.7

Q ss_pred             CCcceEEEeeecc-ccccchhhhhccCccccEEEEeccCCCCc-ccchHHHhhcCCCccEEEEeCCCCc-----ccCcCC
Q 039007           10 PKRVRHLSFVSAS-ASRNDFSSLLSDLRRVRTILFSINDENTS-ESFFTSCISKSQFLRVLDLDDSTIE-----VLPREI   82 (360)
Q Consensus        10 ~~~l~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~   82 (360)
                      |.+++.|++.++. +....+......|++|++|++++|.+... ..+++..+..+++|++|+++++.++     .++..+
T Consensus       137 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~  216 (592)
T 3ogk_B          137 ADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA  216 (592)
T ss_dssp             GGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH
T ss_pred             cccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH
Confidence            3458889988765 33323445556888999999988875311 2236666778888888888888765     334445


Q ss_pred             CCCCCcCeEeccccccccccchhhhcCCccceEeeccccC--------------------------cCcCCccccccccc
Q 039007           83 GNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLK--------------------------LEELPKDIRYLVSL  136 (360)
Q Consensus        83 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~--------------------------~~~~p~~~~~l~~L  136 (360)
                      ..+++|++|++++| ....++..+..+++|++|+++.+..                          ...+|..+..+++|
T Consensus       217 ~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L  295 (592)
T 3ogk_B          217 RNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQI  295 (592)
T ss_dssp             HHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGC
T ss_pred             hhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCC
Confidence            67788888888876 3445666677777777777763211                          12234445566677


Q ss_pred             cEEEEeccccccc--cccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEecc----------CCCCc--ccCcccC
Q 039007          137 RMFVVTTKQKSLQ--ESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVD----------CPSLI--SLPSAVK  202 (360)
Q Consensus       137 ~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~----------~~~~~--~~~~~~~  202 (360)
                      ++|++++|.+...  ...+..+++|+.|++.++.....++.....+++|++|++++          |...+  .++....
T Consensus       296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~  375 (592)
T 3ogk_B          296 RKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ  375 (592)
T ss_dssp             CEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHH
T ss_pred             cEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHh
Confidence            7777777664322  12345666777776663322223444445567777777763          33322  1222233


Q ss_pred             CCCCCCEEeecCCcCcccccccc------------ccC---CCC---------CCCCCCCCCccceEEecCccC-CCCch
Q 039007          203 CLSSSETLILIDCKSLNLNLNIE------------MEG---EGS---------HHDRDNTRTHLQKLFVSGLKQ-LLDLP  257 (360)
Q Consensus       203 ~~~~L~~L~l~~~~~~~~~~~~~------------~~~---~~~---------~~~~~~~~~~L~~L~L~~~~~-~~~~~  257 (360)
                      .+++|++|++.. ..+.......            +.+   ...         .......+++|+.|+++.|.. +.+..
T Consensus       376 ~~~~L~~L~l~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~  454 (592)
T 3ogk_B          376 GCQELEYMAVYV-SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG  454 (592)
T ss_dssp             HCTTCSEEEEEE-SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred             hCccCeEEEeec-CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence            456666666622 2111110000            000   000         000123356778888765432 22221


Q ss_pred             hhhhcCCCCCCcEEecccCCCcc-cccccccCccccccccccccccccC-CCccccCCCccceecccCCh
Q 039007          258 QWLLQGSTKTLQFLGIEDCPNFM-ALQGSLKDLEALETLLISACRKLSS-LPEDIHHLTTLKTLSIKECP  325 (360)
Q Consensus       258 ~~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~c~  325 (360)
                      ...+...+++|++|++++|.... .++..+.++++|++|+|++|++... ++..+..+++|++|++++|+
T Consensus       455 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence            11222457888999888885443 4556667889999999999985432 44445678899999999997

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.87  E-value=4.7e-23  Score=197.70  Aligned_cols=311  Identities=12%  Similarity=0.023  Sum_probs=192.2

Q ss_pred             CCcceEEEeeeccccccchhhhhcc-Ccc-ccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcc-----cCcCC
Q 039007           10 PKRVRHLSFVSASASRNDFSSLLSD-LRR-VRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEV-----LPREI   82 (360)
Q Consensus        10 ~~~l~~L~l~~~~~~~~~~~~~~~~-~~~-L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----~~~~~   82 (360)
                      -++++.|++.++.+.+ .....+.. ++. |++|++++|. ......+.....+|++|++|++++|.++.     ++..+
T Consensus       111 ~~~L~~L~L~~~~i~~-~~~~~l~~~~~~~L~~L~L~~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~  188 (592)
T 3ogk_B          111 LRQLKSVHFRRMIVSD-LDLDRLAKARADDLETLKLDKCS-GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA  188 (592)
T ss_dssp             CTTCCEEEEESCBCCH-HHHHHHHHHHGGGCCEEEEESCE-EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred             CCCCCeEEeeccEecH-HHHHHHHHhccccCcEEECcCCC-CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence            3789999999998877 33334444 555 9999999886 22344566667799999999999998652     33345


Q ss_pred             CCCCCcCeEeccccccc----cccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccc-------------
Q 039007           83 GNLKHMRYLDLSRYCQI----KKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQ-------------  145 (360)
Q Consensus        83 ~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~-------------  145 (360)
                      ..+++|++|+++++...    ..++..+.++++|+.|++++|... .+|..+..+++|+.|+++...             
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  267 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV  267 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred             hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence            67899999999987543    244555678999999999997544 466667777777777776321             


Q ss_pred             --------------cccccccCCCCCCCcEeeccCCCchh-hhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEE
Q 039007          146 --------------KSLQESGIACLSSLRSLIISHCWNLE-YLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETL  210 (360)
Q Consensus       146 --------------~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  210 (360)
                                    ....+..+..+++|++|++++|.... .+...+..+++|+.|+++++.....++.....+++|++|
T Consensus       268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L  347 (592)
T 3ogk_B          268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL  347 (592)
T ss_dssp             CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred             ccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence                          12223344556677777777765322 333445677777777777432223344444567888888


Q ss_pred             eecC----------CcCccccccccccC---------------CCCCCC-CCCCCCccceEEecC---ccCCCCc-----
Q 039007          211 ILID----------CKSLNLNLNIEMEG---------------EGSHHD-RDNTRTHLQKLFVSG---LKQLLDL-----  256 (360)
Q Consensus       211 ~l~~----------~~~~~~~~~~~~~~---------------~~~~~~-~~~~~~~L~~L~L~~---~~~~~~~-----  256 (360)
                      ++.+          |..+.......+..               .+.... ....+++|+.|++++   +..+++.     
T Consensus       348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~  427 (592)
T 3ogk_B          348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG  427 (592)
T ss_dssp             EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred             EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence            8884          55444321111000               000000 011244566666652   2233332     


Q ss_pred             -hhhhhcCCCCCCcEEecccCCC-cc-ccc-ccccCcccccccccccccccc-CCCccccCCCccceecccCCh
Q 039007          257 -PQWLLQGSTKTLQFLGIEDCPN-FM-ALQ-GSLKDLEALETLLISACRKLS-SLPEDIHHLTTLKTLSIKECP  325 (360)
Q Consensus       257 -~~~~~~~~~~~L~~L~L~~~~~-~~-~~~-~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~c~  325 (360)
                       +...  ..+++|++|++++|.. ++ ..+ .....+++|++|++++|++.. .++..+..+++|++|++++|+
T Consensus       428 ~~~~~--~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~  499 (592)
T 3ogk_B          428 VRSLL--IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC  499 (592)
T ss_dssp             HHHHH--HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred             HHHHH--HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence             1222  4567777777765432 22 222 222347788888888887554 345556778999999999996

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.87  E-value=5.6e-21  Score=182.34  Aligned_cols=251  Identities=21%  Similarity=0.158  Sum_probs=197.1

Q ss_pred             ccccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCC
Q 039007            4 SDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIG   83 (360)
Q Consensus         4 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~   83 (360)
                      ..+..+|++++.|++.+|.+..  ++.   .+++|++|++++|.+..    ++.   .+++|++|++++|.++.+|.   
T Consensus        54 ~lp~~l~~~L~~L~L~~N~l~~--lp~---~l~~L~~L~Ls~N~l~~----lp~---~l~~L~~L~Ls~N~l~~l~~---  118 (622)
T 3g06_A           54 TLPDCLPAHITTLVIPDNNLTS--LPA---LPPELRTLEVSGNQLTS----LPV---LPPGLLELSIFSNPLTHLPA---  118 (622)
T ss_dssp             CCCSCCCTTCSEEEECSCCCSC--CCC---CCTTCCEEEECSCCCSC----CCC---CCTTCCEEEECSCCCCCCCC---
T ss_pred             ccChhhCCCCcEEEecCCCCCC--CCC---cCCCCCEEEcCCCcCCc----CCC---CCCCCCEEECcCCcCCCCCC---
Confidence            3456677899999999999876  333   67899999999998742    222   67899999999999998876   


Q ss_pred             CCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEee
Q 039007           84 NLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLI  163 (360)
Q Consensus        84 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~  163 (360)
                      .+++|++|++++| .+..+|..   +++|+.|++++|. +..+|.   .+++|+.|++++|.+..++   ..+++|+.|+
T Consensus       119 ~l~~L~~L~L~~N-~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~  187 (622)
T 3g06_A          119 LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQ-LASLPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELS  187 (622)
T ss_dssp             CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEE
T ss_pred             CCCCcCEEECCCC-CCCcCCCC---CCCCCEEECcCCc-CCCcCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEE
Confidence            5689999999988 56667764   4899999999984 445664   3578999999999998876   5678999999


Q ss_pred             ccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccc
Q 039007          164 ISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQ  243 (360)
Q Consensus       164 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  243 (360)
                      +++|.. +.++.   .+++|+.|++++|. +..+|..   +++|++|++++|.....               ...+++|+
T Consensus       188 Ls~N~l-~~l~~---~~~~L~~L~L~~N~-l~~l~~~---~~~L~~L~Ls~N~L~~l---------------p~~l~~L~  244 (622)
T 3g06_A          188 VSDNQL-ASLPT---LPSELYKLWAYNNR-LTSLPAL---PSGLKELIVSGNRLTSL---------------PVLPSELK  244 (622)
T ss_dssp             CCSSCC-SCCCC---CCTTCCEEECCSSC-CSSCCCC---CTTCCEEECCSSCCSCC---------------CCCCTTCC
T ss_pred             CCCCCC-CCCCC---ccchhhEEECcCCc-ccccCCC---CCCCCEEEccCCccCcC---------------CCCCCcCc
Confidence            999853 44443   35899999999984 4456643   58999999999853321               13457899


Q ss_pred             eEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccc
Q 039007          244 KLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDI  310 (360)
Q Consensus       244 ~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  310 (360)
                      .|++++|. +..+|.     .+++|++|++++| .++.+|..+.++++|+.|++++|++.+..+..+
T Consensus       245 ~L~Ls~N~-L~~lp~-----~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l  304 (622)
T 3g06_A          245 ELMVSGNR-LTSLPM-----LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQAL  304 (622)
T ss_dssp             EEECCSSC-CSCCCC-----CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred             EEECCCCC-CCcCCc-----ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence            99999986 446664     5689999999998 566889899999999999999999776555433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=1.3e-21  Score=182.62  Aligned_cols=244  Identities=13%  Similarity=0.083  Sum_probs=194.1

Q ss_pred             hHHHhhcC----CCccEEEEeCCCCcccC-cCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCcc
Q 039007           55 FTSCISKS----QFLRVLDLDDSTIEVLP-REIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKD  129 (360)
Q Consensus        55 ~~~~~~~l----~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~  129 (360)
                      ++..+..+    ++|++|++++|.++.++ ..+..+++|++|++++|. +...++ +..+++|+.|++++|.+ ..+|  
T Consensus        22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l-~~l~--   96 (487)
T 3oja_A           22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNYV-QELL--   96 (487)
T ss_dssp             HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSEE-EEEE--
T ss_pred             hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCcC-CCCC--
Confidence            44444444    48999999999999654 679999999999999985 444444 88999999999999843 3333  


Q ss_pred             ccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccC-CCCCCC
Q 039007          130 IRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVK-CLSSSE  208 (360)
Q Consensus       130 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~  208 (360)
                        ..++|+.|++++|.+...+.  ..+++|+.|++++|......+..++.+++|+.|++++|......|..+. .+++|+
T Consensus        97 --~~~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~  172 (487)
T 3oja_A           97 --VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE  172 (487)
T ss_dssp             --ECTTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred             --CCCCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence              34899999999999887643  3568999999999876666677788899999999999977766666665 789999


Q ss_pred             EEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccC
Q 039007          209 TLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKD  288 (360)
Q Consensus       209 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~  288 (360)
                      +|++++|......             ....+++|+.|+|++|... .++..+  ..+++|+.|++++| .+..+|..+..
T Consensus       173 ~L~Ls~N~l~~~~-------------~~~~l~~L~~L~Ls~N~l~-~~~~~~--~~l~~L~~L~Ls~N-~l~~lp~~l~~  235 (487)
T 3oja_A          173 HLNLQYNFIYDVK-------------GQVVFAKLKTLDLSSNKLA-FMGPEF--QSAAGVTWISLRNN-KLVLIEKALRF  235 (487)
T ss_dssp             EEECTTSCCCEEE-------------CCCCCTTCCEEECCSSCCC-EECGGG--GGGTTCSEEECTTS-CCCEECTTCCC
T ss_pred             EEecCCCcccccc-------------ccccCCCCCEEECCCCCCC-CCCHhH--cCCCCccEEEecCC-cCcccchhhcc
Confidence            9999998754321             1235789999999998754 565555  68899999999998 56678888999


Q ss_pred             ccccccccccccccc-cCCCccccCCCccceecccCC
Q 039007          289 LEALETLLISACRKL-SSLPEDIHHLTTLKTLSIKEC  324 (360)
Q Consensus       289 l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~c  324 (360)
                      +++|+.|++++|++. ..+|..+..++.|+.+.+..+
T Consensus       236 l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~  272 (487)
T 3oja_A          236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (487)
T ss_dssp             CTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecccc
Confidence            999999999999977 456777888889988888633

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.85  E-value=1.2e-20  Score=163.30  Aligned_cols=136  Identities=15%  Similarity=0.130  Sum_probs=60.0

Q ss_pred             CCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC-cCCCCCC
Q 039007            8 SIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-REIGNLK   86 (360)
Q Consensus         8 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~   86 (360)
                      .+|++++.|++.++.+.. .....+.++++|++|++++|.+   ....+..+.++++|++|++++|.++.++ ..+..++
T Consensus        25 ~l~~~l~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  100 (276)
T 2z62_A           25 NLPFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS  100 (276)
T ss_dssp             SSCTTCCEEECTTCCCCE-ECTTTTTTCTTCSEEECTTCCC---CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred             CCCCCccEEECCCCcccc-cCHhHhccccCCcEEECCCCcC---CccCHHHccCCcCCCEEECCCCccCccChhhhcCCc
Confidence            344445555555554444 2223444555555555555443   2222233444555555555555544322 3344455


Q ss_pred             CcCeEeccccccccccchhhhcCCccceEeeccccCcC-cCCccccccccccEEEEeccccc
Q 039007           87 HMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLE-ELPKDIRYLVSLRMFVVTTKQKS  147 (360)
Q Consensus        87 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~  147 (360)
                      +|++|++++|......+..+..+++|++|++++|.... .+|..++.+++|+.|++++|.+.
T Consensus       101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A          101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence            55555554442222112234444555555554443322 23444444444555544444443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=1.8e-21  Score=173.51  Aligned_cols=254  Identities=19%  Similarity=0.095  Sum_probs=167.8

Q ss_pred             ccccEEEEeccCCCCcccchHHHhhcC--CCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccc-cchhhhcCCcc
Q 039007           36 RRVRTILFSINDENTSESFFTSCISKS--QFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKK-LPNSICELQSL  112 (360)
Q Consensus        36 ~~L~~L~l~~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L  112 (360)
                      ..++.++++++.+.      +..+..+  +.++.|+++++.+...+..+..+++|++|++++|..... ++..+..+++|
T Consensus        47 ~~~~~l~l~~~~~~------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L  120 (336)
T 2ast_B           47 SLWQTLDLTGKNLH------PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL  120 (336)
T ss_dssp             TTSSEEECTTCBCC------HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred             hhheeeccccccCC------HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence            34788888877652      3445555  788899998888876556677788999999988854433 66777888999


Q ss_pred             ceEeeccccCcCcCCccccccccccEEEEecc-cccc--ccccCCCCCCCcEeeccCC-Cchh-hhHhhhcCCC-CccEE
Q 039007          113 QTLILRGCLKLEELPKDIRYLVSLRMFVVTTK-QKSL--QESGIACLSSLRSLIISHC-WNLE-YLFEHIGQLS-GLRSL  186 (360)
Q Consensus       113 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~-~~~~--~~~~~~~l~~L~~L~l~~~-~~~~-~~~~~l~~l~-~L~~L  186 (360)
                      ++|++++|...+..|..+..+++|++|++++| .+..  .+..+..+++|++|++++| .... .++..+..++ +|++|
T Consensus       121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L  200 (336)
T 2ast_B          121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL  200 (336)
T ss_dssp             SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred             CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence            99999888655566667778888888888888 4543  3455677888888888887 4333 2566677788 88888


Q ss_pred             EeccCC--CC-cccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchh-hhhc
Q 039007          187 ILVDCP--SL-ISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQ-WLLQ  262 (360)
Q Consensus       187 ~l~~~~--~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~  262 (360)
                      ++++|.  .. ..++..+..+++|++|++++|..++...          ......+++|+.|++++|........ .+  
T Consensus       201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~----------~~~l~~l~~L~~L~l~~~~~~~~~~~~~l--  268 (336)
T 2ast_B          201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC----------FQEFFQLNYLQHLSLSRCYDIIPETLLEL--  268 (336)
T ss_dssp             ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG----------GGGGGGCTTCCEEECTTCTTCCGGGGGGG--
T ss_pred             EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHH----------HHHHhCCCCCCEeeCCCCCCCCHHHHHHH--
Confidence            888874  22 3456666678888888888876443221          11223446777777777753322111 22  


Q ss_pred             CCCCCCcEEecccCCCcccccccccCc-cccccccccccccccCCCcccc
Q 039007          263 GSTKTLQFLGIEDCPNFMALQGSLKDL-EALETLLISACRKLSSLPEDIH  311 (360)
Q Consensus       263 ~~~~~L~~L~L~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~  311 (360)
                      ..+++|++|++++|  +..  ..+..+ ..|..|++++|.+.+..|..+.
T Consensus       269 ~~~~~L~~L~l~~~--i~~--~~~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          269 GEIPTLKTLQVFGI--VPD--GTLQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             GGCTTCCEEECTTS--SCT--TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             hcCCCCCEEeccCc--cCH--HHHHHHHhhCcceEEecccCccccCCccc
Confidence            45777777777777  221  112223 2366666777666555554443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=1.6e-21  Score=173.77  Aligned_cols=256  Identities=17%  Similarity=0.107  Sum_probs=191.7

Q ss_pred             CCcceEEEeeeccccccchhhhhccC--ccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCc-c-cCcCCCCC
Q 039007           10 PKRVRHLSFVSASASRNDFSSLLSDL--RRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIE-V-LPREIGNL   85 (360)
Q Consensus        10 ~~~l~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~-~~~~~~~l   85 (360)
                      |..++++++.++.+..    ..+..+  ++++.|++++|.+.   +..+. +..+++|++|++++|.+. . ++..+..+
T Consensus        46 ~~~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~---~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~  117 (336)
T 2ast_B           46 ESLWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMD---QPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQC  117 (336)
T ss_dssp             STTSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEEC---SCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTB
T ss_pred             chhheeeccccccCCH----HHHHhhhhccceEEEcCCcccc---ccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhC
Confidence            5568899998887664    345555  78999999998864   22222 557899999999999987 3 77788999


Q ss_pred             CCcCeEeccccccccccchhhhcCCccceEeeccccCcC--cCCccccccccccEEEEecc-cccc--ccccCCCCC-CC
Q 039007           86 KHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLE--ELPKDIRYLVSLRMFVVTTK-QKSL--QESGIACLS-SL  159 (360)
Q Consensus        86 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~~-~~~~--~~~~~~~l~-~L  159 (360)
                      ++|++|++++|...+..+..++.+++|++|++++|....  .++..+..+++|++|++++| .+..  .+..+..++ +|
T Consensus       118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L  197 (336)
T 2ast_B          118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  197 (336)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence            999999999996555677788899999999999984443  36666888999999999999 7764  356678899 99


Q ss_pred             cEeeccCCC-ch--hhhHhhhcCCCCccEEEeccCC-CCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCC
Q 039007          160 RSLIISHCW-NL--EYLFEHIGQLSGLRSLILVDCP-SLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDR  235 (360)
Q Consensus       160 ~~L~l~~~~-~~--~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  235 (360)
                      +.|++++|. .+  ..++..+..+++|+.|++++|. .....+..+..+++|++|++++|.......          ...
T Consensus       198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----------~~~  267 (336)
T 2ast_B          198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET----------LLE  267 (336)
T ss_dssp             CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG----------GGG
T ss_pred             CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH----------HHH
Confidence            999999984 22  4667778889999999999998 444666778889999999999997443221          112


Q ss_pred             CCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccC
Q 039007          236 DNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKD  288 (360)
Q Consensus       236 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~  288 (360)
                      ...+++|+.|++++| ........+    ...++.|++++|...+..|..++.
T Consensus       268 l~~~~~L~~L~l~~~-i~~~~~~~l----~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          268 LGEIPTLKTLQVFGI-VPDGTLQLL----KEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             GGGCTTCCEEECTTS-SCTTCHHHH----HHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             HhcCCCCCEEeccCc-cCHHHHHHH----HhhCcceEEecccCccccCCcccc
Confidence            345789999999998 222222222    133666668877655566665544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=8.8e-20  Score=154.47  Aligned_cols=174  Identities=11%  Similarity=0.063  Sum_probs=93.4

Q ss_pred             cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCC-CcccCc-CCCCCCCcCeEeccccccccccc-hhhhcCCccc
Q 039007           37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDST-IEVLPR-EIGNLKHMRYLDLSRYCQIKKLP-NSICELQSLQ  113 (360)
Q Consensus        37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~  113 (360)
                      +|++|++++|.+   ....+..|.++++|++|++++|. ++.++. .+..+++|++|++++|..++.++ ..+..+++|+
T Consensus        32 ~l~~L~l~~n~l---~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           32 STQTLKLIETHL---RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             TCCEEEEESCCC---SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             cccEEEEeCCcc---eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            566666666654   23333345566666666666664 554443 45566666666666522344433 3455566666


Q ss_pred             eEeeccccCcCcCCcccccccccc---EEEEecc-cccccc-ccCCCCCCCc-EeeccCCCchhhhHhhhcCCCCccEEE
Q 039007          114 TLILRGCLKLEELPKDIRYLVSLR---MFVVTTK-QKSLQE-SGIACLSSLR-SLIISHCWNLEYLFEHIGQLSGLRSLI  187 (360)
Q Consensus       114 ~L~l~~~~~~~~~p~~~~~l~~L~---~L~l~~~-~~~~~~-~~~~~l~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~  187 (360)
                      .|++++|.. ..+|. +..+++|+   .|++++| .+..++ ..+..+++|+ .|++++|... .++......++|+.|+
T Consensus       109 ~L~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~  185 (239)
T 2xwt_C          109 FLGIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVY  185 (239)
T ss_dssp             EEEEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEE
T ss_pred             EEeCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEE
Confidence            666666533 33554 55555555   6666666 555443 3355666666 6666665332 3333322335666666


Q ss_pred             eccCCCCcccC-cccCCC-CCCCEEeecCCc
Q 039007          188 LVDCPSLISLP-SAVKCL-SSSETLILIDCK  216 (360)
Q Consensus       188 l~~~~~~~~~~-~~~~~~-~~L~~L~l~~~~  216 (360)
                      +++|+.++.++ ..+..+ ++|+.|+++++.
T Consensus       186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~  216 (239)
T 2xwt_C          186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS  216 (239)
T ss_dssp             CTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred             cCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence            66664333433 345555 666666666654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.82  E-value=1.9e-22  Score=193.48  Aligned_cols=129  Identities=14%  Similarity=0.211  Sum_probs=82.6

Q ss_pred             CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcc-----cCcCCCCC
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEV-----LPREIGNL   85 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~l   85 (360)
                      ++++.|++.++.+.+..+......+++|++|++++|.. .....++..+.++++|++|++++|.++.     ++.....+
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~-~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~  183 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG-FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY  183 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE-EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC-CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence            57999999999887744443334799999999998841 1233466667789999999999987552     33344577


Q ss_pred             CCcCeEeccccc-cc--cccchhhhcCCccceEeeccccCcCcCCccccccccccEEE
Q 039007           86 KHMRYLDLSRYC-QI--KKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFV  140 (360)
Q Consensus        86 ~~L~~L~l~~~~-~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~  140 (360)
                      ++|++|++++|. .+  ..++..+..+++|+.|++++|...+.+|..+..+++|+.|+
T Consensus       184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~  241 (594)
T 2p1m_B          184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELG  241 (594)
T ss_dssp             CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEE
T ss_pred             CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcc
Confidence            888899888774 11  11222234578888888877633222333333333444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.82  E-value=2.2e-20  Score=161.29  Aligned_cols=207  Identities=17%  Similarity=0.105  Sum_probs=94.3

Q ss_pred             CCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEE
Q 039007           62 SQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVV  141 (360)
Q Consensus        62 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l  141 (360)
                      +++|+.|+++++.+..++ .+..+++|++|++++|. +..++ .+..+++|++|++++|...+..+..+..+++|+.|++
T Consensus        40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL  116 (272)
T ss_dssp             HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccceeeeeeCCCCccccc-ccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence            344444444444443332 23444444444444442 22222 2444444444444444322222222344444444444


Q ss_pred             ecccccccc-ccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccc
Q 039007          142 TTKQKSLQE-SGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNL  220 (360)
Q Consensus       142 ~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  220 (360)
                      ++|.+...+ ..+..+++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++|.....
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (272)
T 3rfs_A          117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV  196 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence            444444332 2234444455555544432222222234455555555555533322223344555555555555432211


Q ss_pred             cccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccc
Q 039007          221 NLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEA  291 (360)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~  291 (360)
                                 .......+++|+.|++++|...         +.++.|+.+++..|.....+|..++.++.
T Consensus       197 -----------~~~~~~~l~~L~~L~l~~N~~~---------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          197 -----------PDGVFDRLTSLQYIWLHDNPWD---------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             -----------CTTTTTTCTTCCEEECCSSCBC---------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             -----------CHHHHhCCcCCCEEEccCCCcc---------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence                       1112334455666666665422         44567788888777666677777766554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.82  E-value=2e-19  Score=155.12  Aligned_cols=196  Identities=18%  Similarity=0.160  Sum_probs=91.7

Q ss_pred             cceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcC-CCCCCCcCe
Q 039007           12 RVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPRE-IGNLKHMRY   90 (360)
Q Consensus        12 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~   90 (360)
                      ..+.+++.++.++.  ++..+.  +++++|++++|.+.   ...+..|.++++|++|++++|.++.+|.. +..+++|++
T Consensus        17 ~~~~l~~~~~~l~~--ip~~~~--~~l~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~   89 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA--IPSNIP--ADTKKLDLQSNKLS---SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET   89 (270)
T ss_dssp             TTTEEECTTSCCSS--CCSCCC--TTCSEEECCSSCCS---CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCE
T ss_pred             CCCEEEccCCCCCc--cCCCCC--CCCCEEECcCCCCC---eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCE
Confidence            44555555555443  221121  34555666555542   22233455555566666655555544433 345555666


Q ss_pred             Eeccccccccccc-hhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccc-cCCCCCCCcEeeccCCC
Q 039007           91 LDLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQES-GIACLSSLRSLIISHCW  168 (360)
Q Consensus        91 L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~  168 (360)
                      |++++|. +..++ ..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+...+. .+..+++|+.|++++|.
T Consensus        90 L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  168 (270)
T 2o6q_A           90 LWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ  168 (270)
T ss_dssp             EECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc
Confidence            6655552 33332 334555555555555543333333334555555555555555544432 24455555555555543


Q ss_pred             chhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCC
Q 039007          169 NLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDC  215 (360)
Q Consensus       169 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  215 (360)
                      .....+..+..+++|+.|++++|......+..+..+++|+.|+++++
T Consensus       169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          169 LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence            32222223444555555555554322211222344444444444443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.82  E-value=4.9e-22  Score=190.66  Aligned_cols=132  Identities=12%  Similarity=0.088  Sum_probs=84.8

Q ss_pred             CcceEEEeeeccccc-cc-------------hhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCC-CC
Q 039007           11 KRVRHLSFVSASASR-ND-------------FSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDS-TI   75 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~-~~-------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~   75 (360)
                      ++++.|++.++.... ..             +......+++|++|+++++.+.  +..+......+++|++|++++| .+
T Consensus        66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~--~~~~~~l~~~~~~L~~L~L~~~~~~  143 (594)
T 2p1m_B           66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVT--DDCLELIAKSFKNFKVLVLSSCEGF  143 (594)
T ss_dssp             TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC--HHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred             CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEc--HHHHHHHHHhCCCCcEEeCCCcCCC
Confidence            668888888764221 00             1233457888999999988753  3333333447889999999888 45


Q ss_pred             c--ccCcCCCCCCCcCeEeccccccccccchhh----hcCCccceEeecccc-Cc--CcCCccccccccccEEEEecc
Q 039007           76 E--VLPREIGNLKHMRYLDLSRYCQIKKLPNSI----CELQSLQTLILRGCL-KL--EELPKDIRYLVSLRMFVVTTK  144 (360)
Q Consensus        76 ~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~-~~--~~~p~~~~~l~~L~~L~l~~~  144 (360)
                      +  .++..+..+++|++|++++|...+..+..+    ..+++|+.|++++|. ..  ..++..+..+++|+.|+++++
T Consensus       144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            4  255555578899999998885333222223    367789999998874 01  111222345688999998877

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.81  E-value=3.5e-19  Score=155.06  Aligned_cols=200  Identities=19%  Similarity=0.114  Sum_probs=96.4

Q ss_pred             cCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEE
Q 039007           61 KSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFV  140 (360)
Q Consensus        61 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~  140 (360)
                      +++++++++++++.++.+|..+.  ++++.|++++|......+..+..+++|+.|++++|.+ ..++.. +.+++|+.|+
T Consensus         8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~-~~l~~L~~L~   83 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD-GTLPVLGTLD   83 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECC-SCCTTCCEEE
T ss_pred             ccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc-CcccCC-CCCCcCCEEE
Confidence            34445555555555554444332  3455555555432222234445555555555555422 222221 4445555555


Q ss_pred             EeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccc
Q 039007          141 VTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNL  220 (360)
Q Consensus       141 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  220 (360)
                      +++|.+..++..+..+++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|.....
T Consensus        84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  163 (290)
T 1p9a_G           84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (290)
T ss_dssp             CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence            55555554444445555555555555433222223445555555555555533322223344555555555555432211


Q ss_pred             cccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCC
Q 039007          221 NLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPN  278 (360)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  278 (360)
                                 ....+..+++|+.|++++|. +..+|...  ...+.|+.|++.+|..
T Consensus       164 -----------~~~~~~~l~~L~~L~L~~N~-l~~ip~~~--~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          164 -----------PAGLLNGLENLDTLLLQENS-LYTIPKGF--FGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             -----------CTTTTTTCTTCCEEECCSSC-CCCCCTTT--TTTCCCSEEECCSCCB
T ss_pred             -----------CHHHhcCcCCCCEEECCCCc-CCccChhh--cccccCCeEEeCCCCc
Confidence                       01112334455666665554 33555555  4556788888887754

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.81  E-value=1.5e-19  Score=156.54  Aligned_cols=127  Identities=25%  Similarity=0.197  Sum_probs=52.0

Q ss_pred             ccEEEEeCCCCcccCc-CCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEec
Q 039007           65 LRVLDLDDSTIEVLPR-EIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTT  143 (360)
Q Consensus        65 L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  143 (360)
                      |++|++++|.++.++. .+..+++|++|++++|......+..+..+++|+.|++++|...+..+..+..+++|+.|++++
T Consensus        30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  109 (276)
T 2z62_A           30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE  109 (276)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCC
Confidence            4444444444443322 344444444444444422111122344444444444444433222223344444444444444


Q ss_pred             ccccccc-ccCCCCCCCcEeeccCCCchh-hhHhhhcCCCCccEEEeccC
Q 039007          144 KQKSLQE-SGIACLSSLRSLIISHCWNLE-YLFEHIGQLSGLRSLILVDC  191 (360)
Q Consensus       144 ~~~~~~~-~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~  191 (360)
                      |.+...+ ..+..+++|+.|++++|.... .+|..++.+++|+.|++++|
T Consensus       110 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N  159 (276)
T 2z62_A          110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  159 (276)
T ss_dssp             SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             CCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC
Confidence            4443332 134444444444444443222 12334444455555555444

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.81  E-value=4.5e-19  Score=153.10  Aligned_cols=225  Identities=14%  Similarity=0.072  Sum_probs=169.4

Q ss_pred             cEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccc
Q 039007           66 RVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQ  145 (360)
Q Consensus        66 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~  145 (360)
                      ..+.+..+.+... .....+++|+.|+++++ .+..++. +..+++|+.|++++|... .+ ..+..+++|++|++++|.
T Consensus        22 ~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~-~i~~~~~-l~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~L~~n~   96 (272)
T 3rfs_A           22 IKANLKKKSVTDA-VTQNELNSIDQIIANNS-DIKSVQG-IQYLPNVRYLALGGNKLH-DI-SALKELTNLTYLILTGNQ   96 (272)
T ss_dssp             HHHHHTCSCTTSE-ECHHHHTTCCEEECTTS-CCCCCTT-GGGCTTCCEEECTTSCCC-CC-GGGTTCTTCCEEECTTSC
T ss_pred             HHHHhcCcccccc-cccccccceeeeeeCCC-Ccccccc-cccCCCCcEEECCCCCCC-Cc-hhhcCCCCCCEEECCCCc
Confidence            3444555544433 23556889999999987 4555554 889999999999998544 34 478899999999999999


Q ss_pred             ccccc-ccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccc
Q 039007          146 KSLQE-SGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNI  224 (360)
Q Consensus       146 ~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  224 (360)
                      +...+ ..+..+++|++|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++|.....    
T Consensus        97 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----  172 (272)
T 3rfs_A           97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL----  172 (272)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC----
T ss_pred             cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc----
Confidence            88764 4578999999999999866555555578899999999999965544445578899999999999864321    


Q ss_pred             cccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCcccccccccccccccc
Q 039007          225 EMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLS  304 (360)
Q Consensus       225 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  304 (360)
                             .......+++|+.|++++|......+..+  ..+++|++|++++|...       ..+++|+.+++..|...+
T Consensus       173 -------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g  236 (272)
T 3rfs_A          173 -------PEGVFDKLTQLKDLRLYQNQLKSVPDGVF--DRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSG  236 (272)
T ss_dssp             -------CTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGG
T ss_pred             -------CHHHhcCCccCCEEECCCCcCCccCHHHH--hCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCC
Confidence                   12234567899999999987665444444  78899999999998432       456789999999998888


Q ss_pred             CCCccccCCCc
Q 039007          305 SLPEDIHHLTT  315 (360)
Q Consensus       305 ~~~~~~~~~~~  315 (360)
                      .+|..++.++.
T Consensus       237 ~ip~~~~~~~~  247 (272)
T 3rfs_A          237 VVRNSAGSVAP  247 (272)
T ss_dssp             GBBCTTSCBCG
T ss_pred             cccCcccccCC
Confidence            88887766554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.81  E-value=3.9e-19  Score=156.47  Aligned_cols=177  Identities=12%  Similarity=0.009  Sum_probs=104.3

Q ss_pred             ccccEEEEeccCCCCcccchHH--HhhcCCCccEEEEeCCCCc-ccCcCC--CCCCCcCeEeccccccccccc----hhh
Q 039007           36 RRVRTILFSINDENTSESFFTS--CISKSQFLRVLDLDDSTIE-VLPREI--GNLKHMRYLDLSRYCQIKKLP----NSI  106 (360)
Q Consensus        36 ~~L~~L~l~~~~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~-~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~  106 (360)
                      ..++.+.+.++.+.  ...+..  .+..+++|++|++++|.+. ..|..+  ..+++|++|++++|...+..+    ..+
T Consensus        64 ~~l~~l~l~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           64 LRVRRLTVGAAQVP--AQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             CCCCEEEECSCCCB--HHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             cceeEEEEeCCcCC--HHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            34677777766543  111111  1223456888888888876 555555  777888888888775443332    233


Q ss_pred             hcCCccceEeeccccCcCcCCccccccccccEEEEecccccc---c--cccCCCCCCCcEeeccCCCch--hhhHh-hhc
Q 039007          107 CELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSL---Q--ESGIACLSSLRSLIISHCWNL--EYLFE-HIG  178 (360)
Q Consensus       107 ~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~---~--~~~~~~l~~L~~L~l~~~~~~--~~~~~-~l~  178 (360)
                      ..+++|++|++++|...+..|..++.+++|++|++++|.+..   .  ...+..+++|++|++++|...  ...+. .++
T Consensus       142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~  221 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA  221 (310)
T ss_dssp             TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred             hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence            467788888888776555555667777788888887776532   1  122356777777777776432  12222 235


Q ss_pred             CCCCccEEEeccCCCCcccCcccCCC---CCCCEEeecC
Q 039007          179 QLSGLRSLILVDCPSLISLPSAVKCL---SSSETLILID  214 (360)
Q Consensus       179 ~l~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~  214 (360)
                      .+++|++|++++|......|+.+..+   ++|++|++++
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~  260 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF  260 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS
T ss_pred             cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC
Confidence            66777777777775544445444333   3444444443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.81  E-value=3.6e-19  Score=153.56  Aligned_cols=185  Identities=20%  Similarity=0.172  Sum_probs=151.8

Q ss_pred             ccccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CC
Q 039007            4 SDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EI   82 (360)
Q Consensus         4 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~   82 (360)
                      ..+..+|+.++.|++.++.+.. .....|.++++|++|++++|.+.   ...+..|..+++|++|++++|.+..+|. .+
T Consensus        30 ~ip~~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~---~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  105 (270)
T 2o6q_A           30 AIPSNIPADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQ---TLPAGIFKELKNLETLWVTDNKLQALPIGVF  105 (270)
T ss_dssp             SCCSCCCTTCSEEECCSSCCSC-CCTTSSSSCTTCCEEECCSSCCS---CCCTTTTSSCTTCCEEECCSSCCCCCCTTTT
T ss_pred             ccCCCCCCCCCEEECcCCCCCe-eCHHHhcCCCCCCEEECCCCccC---eeChhhhcCCCCCCEEECCCCcCCcCCHhHc
Confidence            3456788899999999999887 55568999999999999999873   4445567899999999999999997765 57


Q ss_pred             CCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCC-ccccccccccEEEEecccccccc-ccCCCCCCCc
Q 039007           83 GNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELP-KDIRYLVSLRMFVVTTKQKSLQE-SGIACLSSLR  160 (360)
Q Consensus        83 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~  160 (360)
                      ..+++|++|++++|......+..+..+++|+.|++++|.+. .+| ..+..+++|+.|++++|.+...+ ..+..+++|+
T Consensus       106 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  184 (270)
T 2o6q_A          106 DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK  184 (270)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcC
Confidence            88999999999998544444566789999999999998544 455 44789999999999999988765 4588899999


Q ss_pred             EeeccCCCchhhhHhhhcCCCCccEEEeccCCC
Q 039007          161 SLIISHCWNLEYLFEHIGQLSGLRSLILVDCPS  193 (360)
Q Consensus       161 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  193 (360)
                      .|++++|......+..+..+++|+.|++++|+.
T Consensus       185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          185 TLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            999999855443344578899999999999864

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.81  E-value=6e-21  Score=173.39  Aligned_cols=265  Identities=15%  Similarity=0.111  Sum_probs=155.1

Q ss_pred             hhhhhccCccccEEEEeccCCCCc-ccchHHHhhcCCCccEEEEeCCCCc----ccCcCC-------CCCCCcCeEeccc
Q 039007           28 FSSLLSDLRRVRTILFSINDENTS-ESFFTSCISKSQFLRVLDLDDSTIE----VLPREI-------GNLKHMRYLDLSR   95 (360)
Q Consensus        28 ~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~-------~~l~~L~~L~l~~   95 (360)
                      +...+..+++|++|++++|.+... ...+...+..+++|++|++++|.+.    .+|..+       ..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            455677888899999988876311 1123445677888888888887543    334333       6778888888888


Q ss_pred             ccccc----ccchhhhcCCccceEeeccccCcCc----CCcccccc---------ccccEEEEecccccc--cc---ccC
Q 039007           96 YCQIK----KLPNSICELQSLQTLILRGCLKLEE----LPKDIRYL---------VSLRMFVVTTKQKSL--QE---SGI  153 (360)
Q Consensus        96 ~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~p~~~~~l---------~~L~~L~l~~~~~~~--~~---~~~  153 (360)
                      |....    .++..+..+++|+.|++++|.+...    ++..+..+         ++|++|++++|.+..  .+   ..+
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            75444    2566677788888888888755322    22223333         677777777776642  22   244


Q ss_pred             CCCCCCcEeeccCCCchh----hhHh-hhcCCCCccEEEeccCCCC----cccCcccCCCCCCCEEeecCCcCccccccc
Q 039007          154 ACLSSLRSLIISHCWNLE----YLFE-HIGQLSGLRSLILVDCPSL----ISLPSAVKCLSSSETLILIDCKSLNLNLNI  224 (360)
Q Consensus       154 ~~l~~L~~L~l~~~~~~~----~~~~-~l~~l~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  224 (360)
                      ..+++|+.|++++|....    .+.+ .+..+++|+.|++++|...    ..++..+..+++|++|++++|.......  
T Consensus       184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~--  261 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA--  261 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH--
T ss_pred             HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH--
Confidence            556667777777664332    1222 5566667777777666542    3445555556666666666553211100  


Q ss_pred             cccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcc----cccccc-cCccccccccccc
Q 039007          225 EMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFM----ALQGSL-KDLEALETLLISA  299 (360)
Q Consensus       225 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~----~~~~~~-~~l~~L~~L~l~~  299 (360)
                                                   ..++..+....+++|++|+|++|....    .+|..+ ..+++|++|++++
T Consensus       262 -----------------------------~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~  312 (386)
T 2ca6_A          262 -----------------------------AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG  312 (386)
T ss_dssp             -----------------------------HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             -----------------------------HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence                                         012333311236778888887775444    266655 5577888888888


Q ss_pred             cccccCCC--cc-ccCCCccceecccC
Q 039007          300 CRKLSSLP--ED-IHHLTTLKTLSIKE  323 (360)
Q Consensus       300 ~~~~~~~~--~~-~~~~~~L~~L~l~~  323 (360)
                      |++....+  .. ...+++++.+.+..
T Consensus       313 N~l~~~~~~~~~l~~~l~~~~~~~l~~  339 (386)
T 2ca6_A          313 NRFSEEDDVVDEIREVFSTRGRGELDE  339 (386)
T ss_dssp             SBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred             CcCCcchhHHHHHHHHhhhcCcchhhh
Confidence            87665432  11 22245555555443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.81  E-value=1.5e-20  Score=170.83  Aligned_cols=258  Identities=14%  Similarity=0.035  Sum_probs=182.5

Q ss_pred             CcceEEEeeeccccccc---hhhhhccCccccEEEEeccCCCCcccchHH-------HhhcCCCccEEEEeCCCCcc---
Q 039007           11 KRVRHLSFVSASASRND---FSSLLSDLRRVRTILFSINDENTSESFFTS-------CISKSQFLRVLDLDDSTIEV---   77 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------~~~~l~~L~~L~l~~~~~~~---   77 (360)
                      ++++.|++.++.+....   +...+..+++|++|++++|.+......++.       .+..+++|++|++++|.+..   
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            67999999999887732   334577999999999999865433333333       34789999999999999874   


Q ss_pred             --cCcCCCCCCCcCeEeccccccccccc----hhhhcC---------CccceEeeccccCc-CcCC---ccccccccccE
Q 039007           78 --LPREIGNLKHMRYLDLSRYCQIKKLP----NSICEL---------QSLQTLILRGCLKL-EELP---KDIRYLVSLRM  138 (360)
Q Consensus        78 --~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l---------~~L~~L~l~~~~~~-~~~p---~~~~~l~~L~~  138 (360)
                        +|..+..+++|++|++++|......+    ..+..+         ++|+.|++++|.+. ..+|   ..+..+++|+.
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  191 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  191 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence              67778899999999999985533223    333444         89999999998665 3444   45678899999


Q ss_pred             EEEecccccc------ccccCCCCCCCcEeeccCCCch----hhhHhhhcCCCCccEEEeccCCCCcc----cCccc--C
Q 039007          139 FVVTTKQKSL------QESGIACLSSLRSLIISHCWNL----EYLFEHIGQLSGLRSLILVDCPSLIS----LPSAV--K  202 (360)
Q Consensus       139 L~l~~~~~~~------~~~~~~~l~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~--~  202 (360)
                      |++++|.+..      .+..+..+++|+.|++++|...    ..++..+..+++|+.|++++|.....    ++..+  +
T Consensus       192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~  271 (386)
T 2ca6_A          192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL  271 (386)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred             EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence            9999998872      2337889999999999999764    56788899999999999999975543    45555  3


Q ss_pred             CCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccc
Q 039007          203 CLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMAL  282 (360)
Q Consensus       203 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~  282 (360)
                      .+++|++|++++|......                               ...++..+. ..+++|++|++++|......
T Consensus       272 ~~~~L~~L~L~~n~i~~~g-------------------------------~~~l~~~l~-~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          272 ENIGLQTLRLQYNEIELDA-------------------------------VRTLKTVID-EKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             SSCCCCEEECCSSCCBHHH-------------------------------HHHHHHHHH-HHCTTCCEEECTTSBSCTTS
T ss_pred             cCCCeEEEECcCCcCCHHH-------------------------------HHHHHHHHH-hcCCCceEEEccCCcCCcch
Confidence            3677777777766422100                               002444331 34688888888888554433


Q ss_pred             c---ccccCcccccccccccc
Q 039007          283 Q---GSLKDLEALETLLISAC  300 (360)
Q Consensus       283 ~---~~~~~l~~L~~L~l~~~  300 (360)
                      +   .....++.++.+++...
T Consensus       320 ~~~~~l~~~l~~~~~~~l~~~  340 (386)
T 2ca6_A          320 DVVDEIREVFSTRGRGELDEL  340 (386)
T ss_dssp             HHHHHHHHHHHHHTCCEECCC
T ss_pred             hHHHHHHHHhhhcCcchhhhc
Confidence            2   22234566666665543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.80  E-value=6.7e-19  Score=153.28  Aligned_cols=149  Identities=20%  Similarity=0.195  Sum_probs=64.5

Q ss_pred             CccEEEEeCCCCccc-CcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEe
Q 039007           64 FLRVLDLDDSTIEVL-PREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVT  142 (360)
Q Consensus        64 ~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~  142 (360)
                      .+++|++++|.++.+ +..+..+++|++|++++| .++.++.. +.+++|+.|++++| .+..+|..+..+++|+.|+++
T Consensus        32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~  108 (290)
T 1p9a_G           32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVS  108 (290)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECC
T ss_pred             CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECC
Confidence            344444444444422 233444444444444444 23333321 34444455555443 222444444444445555555


Q ss_pred             cccccccc-ccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCc-ccCCCCCCCEEeecCCc
Q 039007          143 TKQKSLQE-SGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPS-AVKCLSSSETLILIDCK  216 (360)
Q Consensus       143 ~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~  216 (360)
                      +|.+...+ ..+..+++|+.|++++|......+..+..+++|+.|++++|... .+|. .+..+++|+.|++++|.
T Consensus       109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENS  183 (290)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEECCCCc
Confidence            44444332 33444455555555544322222223344455555555554322 2222 23444555555555443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.79  E-value=1.6e-18  Score=152.34  Aligned_cols=143  Identities=22%  Similarity=0.215  Sum_probs=61.7

Q ss_pred             CCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEe
Q 039007           63 QFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVT  142 (360)
Q Consensus        63 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~  142 (360)
                      ++|++|+++++.++.++ .+..+++|++|++++| .+..++. +..+++|+.|++++|. ...++ .+..+++|+.|+++
T Consensus        41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLT  115 (308)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECT
T ss_pred             CCcCEEEeeCCCccCch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEECC
Confidence            34444444444444333 3444444444444444 2333333 4444444444444432 22222 34444444444444


Q ss_pred             ccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCC
Q 039007          143 TKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDC  215 (360)
Q Consensus       143 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  215 (360)
                      +|.+...+ .+..+++|+.|++++|.. +.++. +..+++|+.|++++|.. ..++. +..+++|+.|++++|
T Consensus       116 ~n~l~~~~-~l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n  183 (308)
T 1h6u_A          116 STQITDVT-PLAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNAQV-SDLTP-LANLSKLTTLKADDN  183 (308)
T ss_dssp             TSCCCCCG-GGTTCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSS
T ss_pred             CCCCCCch-hhcCCCCCCEEECCCCcc-CcCcc-ccCCCCccEEEccCCcC-CCChh-hcCCCCCCEEECCCC
Confidence            44444332 244444555555544422 11211 44455555555555532 22222 445555555555554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.79  E-value=1.7e-18  Score=152.15  Aligned_cols=194  Identities=21%  Similarity=0.200  Sum_probs=136.4

Q ss_pred             hhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCC
Q 039007           31 LLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQ  110 (360)
Q Consensus        31 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~  110 (360)
                      ....+++|++|+++++.+..    ++ .+..+++|++|++++|.++.++. +..+++|++|++++| .++.++ .+..++
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~----l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~  107 (308)
T 1h6u_A           36 TQADLDGITTLSAFGTGVTT----IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQ  107 (308)
T ss_dssp             CHHHHHTCCEEECTTSCCCC----CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCT
T ss_pred             cHHHcCCcCEEEeeCCCccC----ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCC
Confidence            34567788888888877532    22 36778888888888888776665 778888888888877 455555 477788


Q ss_pred             ccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEecc
Q 039007          111 SLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVD  190 (360)
Q Consensus       111 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  190 (360)
                      +|+.|++++|.. ..++. +..+++|+.|++++|.+...+. +..+++|+.|++++|.. +.++. +..+++|+.|++++
T Consensus       108 ~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~  182 (308)
T 1h6u_A          108 SIKTLDLTSTQI-TDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQV-SDLTP-LANLSKLTTLKADD  182 (308)
T ss_dssp             TCCEEECTTSCC-CCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCS
T ss_pred             CCCEEECCCCCC-CCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcC-CCChh-hcCCCCCCEEECCC
Confidence            888888888743 34543 7778888888888887776643 77788888888888743 33433 77788888888888


Q ss_pred             CCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccC
Q 039007          191 CPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQ  252 (360)
Q Consensus       191 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  252 (360)
                      |.. ..++. +..+++|++|++++|......             ....+++|+.|++++|..
T Consensus       183 n~l-~~~~~-l~~l~~L~~L~L~~N~l~~~~-------------~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          183 NKI-SDISP-LASLPNLIEVHLKNNQISDVS-------------PLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             SCC-CCCGG-GGGCTTCCEEECTTSCCCBCG-------------GGTTCTTCCEEEEEEEEE
T ss_pred             Ccc-CcChh-hcCCCCCCEEEccCCccCccc-------------cccCCCCCCEEEccCCee
Confidence            754 33343 667788888888887543221             145667888888888764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.77  E-value=6.8e-20  Score=164.89  Aligned_cols=254  Identities=13%  Similarity=0.062  Sum_probs=121.0

Q ss_pred             EeeeccccccchhhhhccCccccEEEEeccCCCCcc-cchHHHhhcCC-CccEEEEeCCCCccc-CcCCCCC-----CCc
Q 039007           17 SFVSASASRNDFSSLLSDLRRVRTILFSINDENTSE-SFFTSCISKSQ-FLRVLDLDDSTIEVL-PREIGNL-----KHM   88 (360)
Q Consensus        17 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l~-~L~~L~l~~~~~~~~-~~~~~~l-----~~L   88 (360)
                      .+..+.+++ .++..+...++|++|++++|.+.... ..+...+..++ +|++|++++|.++.. +..+..+     ++|
T Consensus         4 ~ls~n~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            4 KLTLHPGSN-PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             ECCCCTTCC-HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             ccccccchH-HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            444555554 33444444445777777776653111 11224566666 677777777666522 2333332     666


Q ss_pred             CeEeccccccccccchhh----hcC-CccceEeeccccCcCcCCccc----cc-cccccEEEEeccccccc-----cccC
Q 039007           89 RYLDLSRYCQIKKLPNSI----CEL-QSLQTLILRGCLKLEELPKDI----RY-LVSLRMFVVTTKQKSLQ-----ESGI  153 (360)
Q Consensus        89 ~~L~l~~~~~~~~~~~~~----~~l-~~L~~L~l~~~~~~~~~p~~~----~~-l~~L~~L~l~~~~~~~~-----~~~~  153 (360)
                      ++|++++|......+..+    ..+ ++|+.|++++|.+....+..+    .. .++|++|++++|.+...     ...+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            666666664333333322    223 566666666654333222222    12 23556666655554421     1222


Q ss_pred             CCCC-CCcEeeccCCCchhhh----HhhhcCC-CCccEEEeccCCCCc----ccCcccCCCCCCCEEeecCCcCcccccc
Q 039007          154 ACLS-SLRSLIISHCWNLEYL----FEHIGQL-SGLRSLILVDCPSLI----SLPSAVKCLSSSETLILIDCKSLNLNLN  223 (360)
Q Consensus       154 ~~l~-~L~~L~l~~~~~~~~~----~~~l~~l-~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~  223 (360)
                      ..++ +|+.|++++|......    ...+..+ ++|+.|++++|....    .++..+...                   
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~-------------------  223 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI-------------------  223 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHS-------------------
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcC-------------------
Confidence            2332 5555555554332211    1223333 355555555553222    122222221                   


Q ss_pred             ccccCCCCCCCCCCCCCccceEEecCccCCCCchhh--hhcCCCCCCcEEecccCC---C----cccccccccCcccccc
Q 039007          224 IEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQW--LLQGSTKTLQFLGIEDCP---N----FMALQGSLKDLEALET  294 (360)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~--~~~~~~~~L~~L~L~~~~---~----~~~~~~~~~~l~~L~~  294 (360)
                                     .++|+.|+|++|......+..  .....+++|++|++++|.   .    ...++..+..+++|+.
T Consensus       224 ---------------~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~  288 (362)
T 3goz_A          224 ---------------PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIIL  288 (362)
T ss_dssp             ---------------CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEE
T ss_pred             ---------------CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEE
Confidence                           124555555554432221111  111456777777777774   1    2234455667777888


Q ss_pred             ccccccccccC
Q 039007          295 LLISACRKLSS  305 (360)
Q Consensus       295 L~l~~~~~~~~  305 (360)
                      |++++|++...
T Consensus       289 LdL~~N~l~~~  299 (362)
T 3goz_A          289 VDKNGKEIHPS  299 (362)
T ss_dssp             ECTTSCBCCGG
T ss_pred             EecCCCcCCCc
Confidence            88888775543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.77  E-value=3.3e-19  Score=160.44  Aligned_cols=250  Identities=12%  Similarity=0.036  Sum_probs=158.5

Q ss_pred             EEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC-----cCCCCCC-CcCeEeccccccccccchhhhcC-----
Q 039007           41 ILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-----REIGNLK-HMRYLDLSRYCQIKKLPNSICEL-----  109 (360)
Q Consensus        41 L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----  109 (360)
                      +.++.+.+   .+.++..+...++|++|++++|.++..+     ..+..++ +|++|++++|......+..+..+     
T Consensus         3 ~~ls~n~~---~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~   79 (362)
T 3goz_A            3 YKLTLHPG---SNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP   79 (362)
T ss_dssp             EECCCCTT---CCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred             cccccccc---hHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence            45666665   4456666666667999999998887554     4567777 89999998885544445555553     


Q ss_pred             CccceEeeccccCcCcCCccc----ccc-ccccEEEEecccccccc-----ccCCC-CCCCcEeeccCCCchh----hhH
Q 039007          110 QSLQTLILRGCLKLEELPKDI----RYL-VSLRMFVVTTKQKSLQE-----SGIAC-LSSLRSLIISHCWNLE----YLF  174 (360)
Q Consensus       110 ~~L~~L~l~~~~~~~~~p~~~----~~l-~~L~~L~l~~~~~~~~~-----~~~~~-l~~L~~L~l~~~~~~~----~~~  174 (360)
                      ++|++|++++|...+..+..+    ..+ ++|+.|++++|.+...+     ..+.. .++|++|++++|....    .++
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  159 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI  159 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence            888888888876554444433    333 78888888888776542     12333 3577777777765432    444


Q ss_pred             hhhcCCC-CccEEEeccCCCCcccCc----ccCCC-CCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEec
Q 039007          175 EHIGQLS-GLRSLILVDCPSLISLPS----AVKCL-SSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVS  248 (360)
Q Consensus       175 ~~l~~l~-~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~  248 (360)
                      ..+..++ +|++|++++|......+.    .+..+ ++|++|++++|.....                            
T Consensus       160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~----------------------------  211 (362)
T 3goz_A          160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK----------------------------  211 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS----------------------------
T ss_pred             HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh----------------------------
Confidence            5555554 777777777754332221    22333 3556665555431110                            


Q ss_pred             CccCCCCchhhhhcCCCCCCcEEecccCCCccc----ccccccCcccccccccccccccc-------CCCccccCCCccc
Q 039007          249 GLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMA----LQGSLKDLEALETLLISACRKLS-------SLPEDIHHLTTLK  317 (360)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~-------~~~~~~~~~~~L~  317 (360)
                         ....++..+. ...++|++|+|++|.....    +...+..+++|++|++++|.+..       .++..+..+++|+
T Consensus       212 ---~~~~l~~~l~-~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~  287 (362)
T 3goz_A          212 ---SYAELAYIFS-SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII  287 (362)
T ss_dssp             ---CHHHHHHHHH-HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEE
T ss_pred             ---HHHHHHHHHh-cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceE
Confidence               0112344331 2356999999999954442    23456788999999999998322       2445677889999


Q ss_pred             eecccCCh
Q 039007          318 TLSIKECP  325 (360)
Q Consensus       318 ~L~l~~c~  325 (360)
                      +|++++|+
T Consensus       288 ~LdL~~N~  295 (362)
T 3goz_A          288 LVDKNGKE  295 (362)
T ss_dssp             EECTTSCB
T ss_pred             EEecCCCc
Confidence            99999995

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.77  E-value=8.4e-18  Score=142.26  Aligned_cols=197  Identities=16%  Similarity=0.186  Sum_probs=119.6

Q ss_pred             CccEEEEeCCCCcccCc-CCCCCCCcCeEeccccccccccc-hhhhcCCccceEeeccccCcCcCC-ccccccccccEEE
Q 039007           64 FLRVLDLDDSTIEVLPR-EIGNLKHMRYLDLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELP-KDIRYLVSLRMFV  140 (360)
Q Consensus        64 ~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~  140 (360)
                      .|++|++++|.++.+|. .+..+++|++|++++|..++.++ ..+..+++|+.|++++|.....+| ..+..+++|+.|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            67888888888886655 57778888888888774355555 356778888888888722333444 4567778888888


Q ss_pred             EeccccccccccCCCCCCCc---EeeccCCCchhhhH-hhhcCCCCcc-EEEeccCCCCcccCcccCCCCCCCEEeecCC
Q 039007          141 VTTKQKSLQESGIACLSSLR---SLIISHCWNLEYLF-EHIGQLSGLR-SLILVDCPSLISLPSAVKCLSSSETLILIDC  215 (360)
Q Consensus       141 l~~~~~~~~~~~~~~l~~L~---~L~l~~~~~~~~~~-~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  215 (360)
                      +++|.+..++. +..+++|+   .|++++|..++.++ ..+..+++|+ .|++++|... .+|......           
T Consensus       112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-----------  178 (239)
T 2xwt_C          112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-----------  178 (239)
T ss_dssp             EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-----------
T ss_pred             CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-----------
Confidence            88877766654 55666665   66666652233222 2344555555 5555555322 333322112           


Q ss_pred             cCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCC-CCCcEEecccCCCcccccccccCcccccc
Q 039007          216 KSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGST-KTLQFLGIEDCPNFMALQGSLKDLEALET  294 (360)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~l~~L~~  294 (360)
                                              ++|+.|++++|..+..++...+ ..+ ++|++|++++| .++.+|..  .+++|+.
T Consensus       179 ------------------------~~L~~L~L~~n~~l~~i~~~~~-~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~  230 (239)
T 2xwt_C          179 ------------------------TKLDAVYLNKNKYLTVIDKDAF-GGVYSGPSLLDVSQT-SVTALPSK--GLEHLKE  230 (239)
T ss_dssp             ------------------------CEEEEEECTTCTTCCEECTTTT-TTCSBCCSEEECTTC-CCCCCCCT--TCTTCSE
T ss_pred             ------------------------CCCCEEEcCCCCCcccCCHHHh-hccccCCcEEECCCC-ccccCChh--HhccCce
Confidence                                    3555566665543434433322 455 77888888776 44555543  5677777


Q ss_pred             ccccccc
Q 039007          295 LLISACR  301 (360)
Q Consensus       295 L~l~~~~  301 (360)
                      |++.++.
T Consensus       231 L~l~~~~  237 (239)
T 2xwt_C          231 LIARNTW  237 (239)
T ss_dssp             EECTTC-
T ss_pred             eeccCcc
Confidence            7777764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.77  E-value=8.1e-19  Score=154.45  Aligned_cols=199  Identities=15%  Similarity=0.052  Sum_probs=147.8

Q ss_pred             cceEEEeeeccccccchhhh--hccCccccEEEEeccCCCCcccchHHHh--hcCCCccEEEEeCCCCcc-cC----cCC
Q 039007           12 RVRHLSFVSASASRNDFSSL--LSDLRRVRTILFSINDENTSESFFTSCI--SKSQFLRVLDLDDSTIEV-LP----REI   82 (360)
Q Consensus        12 ~l~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~-~~----~~~   82 (360)
                      .++.+.+.+..+....+...  +..+++|++|++++|.+.   +..+..+  ..+++|++|++++|.++. .+    ..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~---~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKIT---GTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCB---SCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEec---cchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            36778888877766444332  335577999999999873   3333444  789999999999999873 33    234


Q ss_pred             CCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCc--C--CccccccccccEEEEeccccccccc----cCC
Q 039007           83 GNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEE--L--PKDIRYLVSLRMFVVTTKQKSLQES----GIA  154 (360)
Q Consensus        83 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~--p~~~~~l~~L~~L~l~~~~~~~~~~----~~~  154 (360)
                      ..+++|++|++++|......+..++.+++|++|++++|...+.  +  +..++.+++|++|++++|.+...+.    .+.
T Consensus       142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~  221 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA  221 (310)
T ss_dssp             TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred             hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence            5789999999999865555557788999999999999865432  2  2234688999999999998875543    256


Q ss_pred             CCCCCcEeeccCCCchhhhHhhhcCC---CCccEEEeccCCCCcccCcccCCCCCCCEEeecCCc
Q 039007          155 CLSSLRSLIISHCWNLEYLFEHIGQL---SGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCK  216 (360)
Q Consensus       155 ~l~~L~~L~l~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  216 (360)
                      .+++|++|++++|......|..+..+   ++|++|++++|... .+|..+.  ++|++|++++|.
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~  283 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNR  283 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCC
T ss_pred             cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCc
Confidence            78999999999987655556666666   79999999998654 6776653  688888887765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.74  E-value=4.9e-17  Score=145.49  Aligned_cols=239  Identities=15%  Similarity=0.092  Sum_probs=163.0

Q ss_pred             cEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CCCCCCCcCeEeccccccccccch-hhhcCCccceEe
Q 039007           39 RTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EIGNLKHMRYLDLSRYCQIKKLPN-SICELQSLQTLI  116 (360)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~  116 (360)
                      ++++.+++.++..+..    +  .+++++|++++|.++.+|+ .|..+++|++|++++|...+.+|. .|.++++|+++.
T Consensus        12 ~~v~C~~~~Lt~iP~~----l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l   85 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSD----L--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   85 (350)
T ss_dssp             TEEEEESTTCCSCCTT----C--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred             CEEEecCCCCCccCcC----c--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence            6778887776432222    2  2578999999999998876 588999999999999866666664 567888887654


Q ss_pred             eccccCcCcC-CccccccccccEEEEecccccccc-ccCCCCCCCcEeeccCCCchhhhHh-hhcCC-CCccEEEeccCC
Q 039007          117 LRGCLKLEEL-PKDIRYLVSLRMFVVTTKQKSLQE-SGIACLSSLRSLIISHCWNLEYLFE-HIGQL-SGLRSLILVDCP  192 (360)
Q Consensus       117 l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l-~~L~~L~l~~~~  192 (360)
                      ..++..+..+ |..+..+++|++|++++|.+...+ ..+....++..+++.++..+..++. .+..+ ..++.|++++|.
T Consensus        86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~  165 (350)
T 4ay9_X           86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG  165 (350)
T ss_dssp             EEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred             cccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence            4433344444 567889999999999999887664 3445566777888877655554443 23343 467888888874


Q ss_pred             CCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEe
Q 039007          193 SLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLG  272 (360)
Q Consensus       193 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~  272 (360)
                       ++.++.......+|+.+.+.+++.+....          ...+..+++|+.|++++|. +..+|.    ..+.+|+.|.
T Consensus       166 -i~~i~~~~f~~~~L~~l~l~~~n~l~~i~----------~~~f~~l~~L~~LdLs~N~-l~~lp~----~~~~~L~~L~  229 (350)
T 4ay9_X          166 -IQEIHNSAFNGTQLDELNLSDNNNLEELP----------NDVFHGASGPVILDISRTR-IHSLPS----YGLENLKKLR  229 (350)
T ss_dssp             -CCEECTTSSTTEEEEEEECTTCTTCCCCC----------TTTTTTEECCSEEECTTSC-CCCCCS----SSCTTCCEEE
T ss_pred             -ccCCChhhccccchhHHhhccCCcccCCC----------HHHhccCcccchhhcCCCC-cCccCh----hhhccchHhh
Confidence             44566665566778888887666554332          1234556678888887775 445554    3356777777


Q ss_pred             cccCCCcccccccccCcccccccccccc
Q 039007          273 IEDCPNFMALQGSLKDLEALETLLISAC  300 (360)
Q Consensus       273 L~~~~~~~~~~~~~~~l~~L~~L~l~~~  300 (360)
                      +.++..++.+|. +..+++|+.+++.++
T Consensus       230 ~l~~~~l~~lP~-l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          230 ARSTYNLKKLPT-LEKLVALMEASLTYP  256 (350)
T ss_dssp             CTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred             hccCCCcCcCCC-chhCcChhhCcCCCC
Confidence            777777777774 677777777777653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.74  E-value=3.1e-17  Score=146.77  Aligned_cols=219  Identities=15%  Similarity=0.117  Sum_probs=106.6

Q ss_pred             ccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCc-ccCc-CCCCCCCcCeEecccccccccc-chhhhcCCcc
Q 039007           36 RRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIE-VLPR-EIGNLKHMRYLDLSRYCQIKKL-PNSICELQSL  112 (360)
Q Consensus        36 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~-~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L  112 (360)
                      +++++|++++|.+   ....+..|.++++|++|++++|.+. .+|. .|..+++++++...++..+..+ |..+..+++|
T Consensus        30 ~~l~~L~Ls~N~i---~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L  106 (350)
T 4ay9_X           30 RNAIELRFVLTKL---RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL  106 (350)
T ss_dssp             TTCSEEEEESCCC---SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred             CCCCEEEccCCcC---CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence            3556666666654   2223334556666666666666543 3332 3455555554333222233333 3445556666


Q ss_pred             ceEeeccccCcCcCCccccccccccEEEEec-ccccccc-ccCCCC-CCCcEeeccCCCchhhhHhhhcCCCCccEEEec
Q 039007          113 QTLILRGCLKLEELPKDIRYLVSLRMFVVTT-KQKSLQE-SGIACL-SSLRSLIISHCWNLEYLFEHIGQLSGLRSLILV  189 (360)
Q Consensus       113 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~-~~~~~~~-~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  189 (360)
                      +.|++++|.+....+..+....++..+++.+ +.+..++ ..+..+ ..++.|++++|. ++.++......++|+++++.
T Consensus       107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~~L~~l~l~  185 (350)
T 4ay9_X          107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLS  185 (350)
T ss_dssp             CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSSTTEEEEEEECT
T ss_pred             ccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhccccchhHHhhc
Confidence            6666665533222222233344455555543 2333222 233333 245556666542 33344444444556666665


Q ss_pred             cCCCCcccCc-ccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCC
Q 039007          190 DCPSLISLPS-AVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTL  268 (360)
Q Consensus       190 ~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L  268 (360)
                      ++...+.+|. .+..+++|++|+++++......              ...+.+|+.|.+.++..++.+|. +  ..+++|
T Consensus       186 ~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp--------------~~~~~~L~~L~~l~~~~l~~lP~-l--~~l~~L  248 (350)
T 4ay9_X          186 DNNNLEELPNDVFHGASGPVILDISRTRIHSLP--------------SYGLENLKKLRARSTYNLKKLPT-L--EKLVAL  248 (350)
T ss_dssp             TCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC--------------SSSCTTCCEEECTTCTTCCCCCC-T--TTCCSC
T ss_pred             cCCcccCCCHHHhccCcccchhhcCCCCcCccC--------------hhhhccchHhhhccCCCcCcCCC-c--hhCcCh
Confidence            5545555553 3455666666666665422111              11233555555555555556653 2  566777


Q ss_pred             cEEeccc
Q 039007          269 QFLGIED  275 (360)
Q Consensus       269 ~~L~L~~  275 (360)
                      +.+++.+
T Consensus       249 ~~l~l~~  255 (350)
T 4ay9_X          249 MEASLTY  255 (350)
T ss_dssp             CEEECSC
T ss_pred             hhCcCCC
Confidence            7777754

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.72  E-value=4e-17  Score=139.08  Aligned_cols=175  Identities=16%  Similarity=0.067  Sum_probs=103.9

Q ss_pred             cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC-cCCCCCCCcCeEeccccccccccchhhhcCCccceE
Q 039007           37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-REIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTL  115 (360)
Q Consensus        37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  115 (360)
                      ..++++++++.+......++      +.++.|++++|.+..++ ..+..+++|++|++++|......+..+..+++|+.|
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   88 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP------ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL   88 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCeEEecCCCCccccCCCCC------CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEE
Confidence            35566666665432222111      35667777777666433 346666777777777664333334445666777777


Q ss_pred             eeccccCcCcCCccccccccccEEEEeccccccccc-cCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCC
Q 039007          116 ILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQES-GIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSL  194 (360)
Q Consensus       116 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  194 (360)
                      ++++|.+....+..+..+++|+.|++++|.+...+. .+..+++|+.|++++|......+..+..+++|+.|++++|...
T Consensus        89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A           89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence            777664443333445666777777777776665543 3566777777777776433333335666777777777777554


Q ss_pred             cccCcccCCCCCCCEEeecCCcC
Q 039007          195 ISLPSAVKCLSSSETLILIDCKS  217 (360)
Q Consensus       195 ~~~~~~~~~~~~L~~L~l~~~~~  217 (360)
                      ...+..+..+++|+.|++++|..
T Consensus       169 ~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          169 SVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             CCCTTTTTTCTTCCEEECCSCCB
T ss_pred             ccCHHHHhCCCCCCEEEeeCCce
Confidence            43344566777777777777654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.72  E-value=5e-17  Score=138.53  Aligned_cols=176  Identities=15%  Similarity=0.106  Sum_probs=128.0

Q ss_pred             CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC-cCCCCCCCcC
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-REIGNLKHMR   89 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~   89 (360)
                      +..+.+++.++.+..  ++..+.  ++++.|++++|.+   ....+..+.++++|++|++++|.++.++ ..+..+++|+
T Consensus        14 ~~~~~l~~~~~~l~~--~p~~~~--~~l~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   86 (251)
T 3m19_A           14 EGKKEVDCQGKSLDS--VPSGIP--ADTEKLDLQSTGL---ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG   86 (251)
T ss_dssp             GGGTEEECTTCCCSS--CCSCCC--TTCCEEECTTSCC---CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             CCCeEEecCCCCccc--cCCCCC--CCCCEEEccCCCc---CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCC
Confidence            455677777777665  333333  5788888888887   3444456788888899999888888554 4578888899


Q ss_pred             eEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccc-cCCCCCCCcEeeccCCC
Q 039007           90 YLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQES-GIACLSSLRSLIISHCW  168 (360)
Q Consensus        90 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~  168 (360)
                      +|++++|......+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+...+. .+..+++|+.|++++|.
T Consensus        87 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  166 (251)
T 3m19_A           87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ  166 (251)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence            99998874433334556788889999998875443333446788889999998888877654 57888889999998876


Q ss_pred             chhhhHhhhcCCCCccEEEeccCCC
Q 039007          169 NLEYLFEHIGQLSGLRSLILVDCPS  193 (360)
Q Consensus       169 ~~~~~~~~l~~l~~L~~L~l~~~~~  193 (360)
                      .....+..+..+++|+.|++++|+.
T Consensus       167 l~~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          167 LQSVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             CCccCHHHHhCCCCCCEEEeeCCce
Confidence            5544445677888999999988864

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.70  E-value=5e-17  Score=134.44  Aligned_cols=178  Identities=16%  Similarity=0.104  Sum_probs=120.6

Q ss_pred             eEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcC-CCCCCCcCeEe
Q 039007           14 RHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPRE-IGNLKHMRYLD   92 (360)
Q Consensus        14 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~   92 (360)
                      +.++..++.+..  ++..  -.++|++|++++|.+.   ...+..+..+++|++|++++|.++.++.. +..+++|++|+
T Consensus        10 ~~v~c~~~~l~~--~p~~--~~~~l~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   82 (208)
T 2o6s_A           10 TTVECYSQGRTS--VPTG--IPAQTTYLDLETNSLK---SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN   82 (208)
T ss_dssp             TEEECCSSCCSS--CCSC--CCTTCSEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CEEEecCCCccC--CCCC--CCCCCcEEEcCCCccC---cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEE
Confidence            344555554443  2211  2357888888888763   33445577788888888888887766543 57788888888


Q ss_pred             ccccccccccc-hhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccc-cCCCCCCCcEeeccCCCch
Q 039007           93 LSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQES-GIACLSSLRSLIISHCWNL  170 (360)
Q Consensus        93 l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~  170 (360)
                      +++|. ++.++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+...+. .+..+++|+.|++++|.. 
T Consensus        83 Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~-  160 (208)
T 2o6s_A           83 LSTNQ-LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW-  160 (208)
T ss_dssp             CCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB-
T ss_pred             CCCCc-CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe-
Confidence            88774 44444 446778888888888775443333446778888888888887776543 467788888888888732 


Q ss_pred             hhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCC
Q 039007          171 EYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSS  206 (360)
Q Consensus       171 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  206 (360)
                            .+.+++|+.|+++.|.....+|+.++.++.
T Consensus       161 ------~~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          161 ------DCTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             ------CCCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ------ecCCCCHHHHHHHHHhCCceeeccCccccC
Confidence                  345678888888887777777877766554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.69  E-value=2.3e-16  Score=137.36  Aligned_cols=170  Identities=18%  Similarity=0.228  Sum_probs=123.8

Q ss_pred             hccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCc
Q 039007           32 LSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQS  111 (360)
Q Consensus        32 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  111 (360)
                      +..+++|+.|++++|.+...    + .+..+++|++|++++|.++.++. +..+++|++|++++| .++.++. +..+++
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~----~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~  113 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV----Q-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKK  113 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC----T-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTT
T ss_pred             hhhcCcccEEEccCCCcccC----h-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCC
Confidence            55778888888888876322    2 26778888888888888887665 788888888888877 4555554 788888


Q ss_pred             cceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccC
Q 039007          112 LQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDC  191 (360)
Q Consensus       112 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  191 (360)
                      |+.|++++|... .+ ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.... ++. +..+++|+.|++++|
T Consensus       114 L~~L~L~~n~i~-~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~-~~~-l~~l~~L~~L~L~~N  188 (291)
T 1h6t_A          114 LKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKN  188 (291)
T ss_dssp             CCEEECTTSCCC-CC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSS
T ss_pred             CCEEECCCCcCC-CC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcccc-chh-hcCCCccCEEECCCC
Confidence            888888887443 34 3577888888888888887766 567778888888888874433 333 777888888888887


Q ss_pred             CCCcccCcccCCCCCCCEEeecCCc
Q 039007          192 PSLISLPSAVKCLSSSETLILIDCK  216 (360)
Q Consensus       192 ~~~~~~~~~~~~~~~L~~L~l~~~~  216 (360)
                      .. ..++. +..+++|+.|++++|.
T Consensus       189 ~i-~~l~~-l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          189 HI-SDLRA-LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             CC-CBCGG-GTTCTTCSEEEEEEEE
T ss_pred             cC-CCChh-hccCCCCCEEECcCCc
Confidence            43 34443 6677788888877764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.69  E-value=2.8e-16  Score=136.79  Aligned_cols=167  Identities=19%  Similarity=0.217  Sum_probs=140.2

Q ss_pred             CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCe
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRY   90 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~   90 (360)
                      ++++.|++.++.+..   .+.+..+++|++|++++|.+.   ...+  +.++++|++|++++|.++.++. +..+++|++
T Consensus        46 ~~L~~L~l~~~~i~~---~~~~~~l~~L~~L~L~~n~l~---~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~  116 (291)
T 1h6t_A           46 NSIDQIIANNSDIKS---VQGIQYLPNVTKLFLNGNKLT---DIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKS  116 (291)
T ss_dssp             HTCCEEECTTSCCCC---CTTGGGCTTCCEEECCSSCCC---CCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCE
T ss_pred             CcccEEEccCCCccc---ChhHhcCCCCCEEEccCCccC---CCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCE
Confidence            568999999998877   245899999999999999874   2222  8899999999999999988654 899999999


Q ss_pred             EeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCch
Q 039007           91 LDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNL  170 (360)
Q Consensus        91 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  170 (360)
                      |++++| .++.++ .+..+++|+.|++++|... .+ ..+..+++|+.|++++|.+...+. +..+++|+.|++++|.. 
T Consensus       117 L~L~~n-~i~~~~-~l~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i-  190 (291)
T 1h6t_A          117 LSLEHN-GISDIN-GLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI-  190 (291)
T ss_dssp             EECTTS-CCCCCG-GGGGCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-
T ss_pred             EECCCC-cCCCCh-hhcCCCCCCEEEccCCcCC-cc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcC-
Confidence            999998 555554 4889999999999998544 44 578899999999999999988754 88999999999999844 


Q ss_pred             hhhHhhhcCCCCccEEEeccCCC
Q 039007          171 EYLFEHIGQLSGLRSLILVDCPS  193 (360)
Q Consensus       171 ~~~~~~l~~l~~L~~L~l~~~~~  193 (360)
                      +.++ .+..+++|+.|++++|+.
T Consensus       191 ~~l~-~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          191 SDLR-ALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             CBCG-GGTTCTTCSEEEEEEEEE
T ss_pred             CCCh-hhccCCCCCEEECcCCcc
Confidence            4444 488999999999999854

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=5e-16  Score=127.23  Aligned_cols=152  Identities=14%  Similarity=0.083  Sum_probs=106.1

Q ss_pred             ccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCcc
Q 039007           33 SDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSL  112 (360)
Q Consensus        33 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  112 (360)
                      ..+++|++|++++|.+.    .++ .+..+++|++|++++|.++.+ +.+..+++|++|++++|......+..+..+++|
T Consensus        41 ~~l~~L~~L~l~~n~i~----~l~-~l~~l~~L~~L~l~~n~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  114 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT----DLT-GIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL  114 (197)
T ss_dssp             HHHHTCCEEEEESSCCS----CCT-TGGGCTTCSEEEEESCCCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred             hhcCCccEEeccCCCcc----ChH-HHhcCCCCCEEEccCCCCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence            56677888888877753    222 367777888888888765544 366777888888888775444456667778888


Q ss_pred             ceEeeccccCcCcCCccccccccccEEEEeccc-cccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccC
Q 039007          113 QTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQ-KSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDC  191 (360)
Q Consensus       113 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  191 (360)
                      +.|++++|...+..|..+..+++|++|++++|. +...+ .+..+++|+.|++++|.. +.++ .+..+++|+.|++++|
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i-~~~~-~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV-HDYR-GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC-CCCT-TGGGCSSCCEEEECBC
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC-cChH-HhccCCCCCEEEeeCc
Confidence            888888776665566667778888888888876 55554 577778888888887643 3333 5677788888888887


Q ss_pred             CC
Q 039007          192 PS  193 (360)
Q Consensus       192 ~~  193 (360)
                      ..
T Consensus       192 ~i  193 (197)
T 4ezg_A          192 TI  193 (197)
T ss_dssp             --
T ss_pred             cc
Confidence            53

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=1.6e-16  Score=130.23  Aligned_cols=151  Identities=15%  Similarity=0.146  Sum_probs=101.1

Q ss_pred             hcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEE
Q 039007           60 SKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMF  139 (360)
Q Consensus        60 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L  139 (360)
                      ..+++|++|++++|.+..+| .+..+++|++|++++| .+..++ .+..+++|++|++++|...+..|..+..+++|+.|
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            45667888888888887776 6777888888888877 444444 46777888888888776555556667777777777


Q ss_pred             EEecccccc-ccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCc
Q 039007          140 VVTTKQKSL-QESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCK  216 (360)
Q Consensus       140 ~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  216 (360)
                      ++++|.+.. .+..+..+++|+.|++++|..++.++ .+..+++|+.|++++|.. ..++ .+..+++|++|+++++.
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i-~~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV-HDYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC-CCCT-TGGGCSSCCEEEECBC-
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC-cChH-HhccCCCCCEEEeeCcc
Confidence            777777664 34556667777777777765445444 466677777777776643 2333 45556666666666553

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.66  E-value=1e-15  Score=126.45  Aligned_cols=146  Identities=22%  Similarity=0.174  Sum_probs=73.8

Q ss_pred             EEEEeCCCCcccCcCCCCCCCcCeEeccccccccccc-hhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccc
Q 039007           67 VLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQ  145 (360)
Q Consensus        67 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~  145 (360)
                      .++.+++.++.+|..+  .++|++|++++|. ++.++ ..+..+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus        11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           11 TVECYSQGRTSVPTGI--PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             EEECCSSCCSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEecCCCccCCCCCC--CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            4455555555555433  2456666666653 33333 334566666666666653332222234556666666666665


Q ss_pred             ccccc-ccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCC
Q 039007          146 KSLQE-SGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDC  215 (360)
Q Consensus       146 ~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  215 (360)
                      +...+ ..+..+++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++|
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence            55443 23455666666666655332222233455666666666665433222223445555555555544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.66  E-value=2.1e-16  Score=149.03  Aligned_cols=195  Identities=17%  Similarity=0.119  Sum_probs=127.8

Q ss_pred             CCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEe
Q 039007           63 QFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVT  142 (360)
Q Consensus        63 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~  142 (360)
                      .+|+.|++++|.++.+|..+  +++|++|++++| .++.+|   ..+++|+.|++++|.+. .+|. +..  +|+.|+++
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~-~ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQN-ALISLP---ELPASLEYLDACDNRLS-TLPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCS-CCCC-CCT--TCCEEECC
T ss_pred             CCccEEEeCCCCCCccCHhH--cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCC-Ccch-hhc--CCCEEECC
Confidence            37889999988888887765  378999999887 455777   45788899999887544 4776 544  88889998


Q ss_pred             ccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccc
Q 039007          143 TKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNL  222 (360)
Q Consensus       143 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  222 (360)
                      +|.+..++.   .+++|+.|++++|.. +.+|.   .+++|+.|++++|.. +.+|. +.  ++|+.|++++|.... .+
T Consensus       129 ~N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~L-~~lp~-l~--~~L~~L~Ls~N~L~~-lp  196 (571)
T 3cvr_A          129 NNQLTMLPE---LPALLEYINADNNQL-TMLPE---LPTSLEVLSVRNNQL-TFLPE-LP--ESLEALDVSTNLLES-LP  196 (571)
T ss_dssp             SSCCSCCCC---CCTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSCC-SCCCC-CC--TTCCEEECCSSCCSS-CC
T ss_pred             CCcCCCCCC---cCccccEEeCCCCcc-CcCCC---cCCCcCEEECCCCCC-CCcch-hh--CCCCEEECcCCCCCc-hh
Confidence            888877765   678888888888753 33444   467888888888754 34666 44  788888888775331 11


Q ss_pred             cccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCc
Q 039007          223 NIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDL  289 (360)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l  289 (360)
                      .  +..     ......+.|+.|+|++|. +..+|..+  ..+++|++|+|++|...+.+|..+..+
T Consensus       197 ~--~~~-----~L~~~~~~L~~L~Ls~N~-l~~lp~~l--~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          197 A--VPV-----RNHHSEETEIFFRCRENR-ITHIPENI--LSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             C--CC-------------CCEEEECCSSC-CCCCCGGG--GGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             h--HHH-----hhhcccccceEEecCCCc-ceecCHHH--hcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            0  000     001111223777777665 33566655  346777777777775555555555443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.66  E-value=6.6e-16  Score=147.15  Aligned_cols=148  Identities=20%  Similarity=0.223  Sum_probs=65.3

Q ss_pred             hhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccE
Q 039007           59 ISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRM  138 (360)
Q Consensus        59 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~  138 (360)
                      +..+++|+.|++++|.+..+++ +..+++|+.|++++| .+..++ .+..+++|+.|++++|.+. .+ ..+..+++|+.
T Consensus        61 l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~l~-~l-~~l~~l~~L~~  135 (605)
T 1m9s_A           61 IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLES  135 (605)
T ss_dssp             GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTSCCC-CC-GGGGGCTTCSE
T ss_pred             HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCCCCC-CC-ccccCCCccCE
Confidence            4444555555555554443333 444455555555544 233333 2444455555555444222 22 23444455555


Q ss_pred             EEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCc
Q 039007          139 FVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCK  216 (360)
Q Consensus       139 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  216 (360)
                      |++++|.+... ..+..+++|+.|++++|......+  +..+++|+.|++++|... .++ .+..+++|+.|++++|.
T Consensus       136 L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          136 LYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             EECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEECCSEE
T ss_pred             EECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEccCCc
Confidence            55555544443 344444555555555443222211  444455555555554222 222 24444555555554443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.63  E-value=4.1e-16  Score=148.58  Aligned_cols=168  Identities=20%  Similarity=0.234  Sum_probs=133.0

Q ss_pred             CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCe
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRY   90 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~   90 (360)
                      ++++.|++.++.+..   .+.+..+++|+.|++++|.+.   ...+  +..+++|+.|++++|.+..+| .+..+++|+.
T Consensus        43 ~~L~~L~l~~n~i~~---l~~l~~l~~L~~L~Ls~N~l~---~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~  113 (605)
T 1m9s_A           43 NSIDQIIANNSDIKS---VQGIQYLPNVTKLFLNGNKLT---DIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS  113 (605)
T ss_dssp             TTCCCCBCTTCCCCC---CTTGGGCTTCCEEECTTSCCC---CCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred             CCCCEEECcCCCCCC---ChHHccCCCCCEEEeeCCCCC---CChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence            568888888888766   246888999999999998863   2222  788999999999999888765 6888999999


Q ss_pred             EeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCch
Q 039007           91 LDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNL  170 (360)
Q Consensus        91 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  170 (360)
                      |++++| .+..++. +..+++|+.|++++|.+. .+ ..+..+++|+.|++++|.+...+. +..+++|+.|++++|.. 
T Consensus       114 L~Ls~N-~l~~l~~-l~~l~~L~~L~Ls~N~l~-~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i-  187 (605)
T 1m9s_A          114 LSLEHN-GISDING-LVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI-  187 (605)
T ss_dssp             EECTTS-CCCCCGG-GGGCTTCSEEECCSSCCC-CC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-
T ss_pred             EEecCC-CCCCCcc-ccCCCccCEEECCCCccC-Cc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCC-
Confidence            999988 4555544 888999999999987544 34 568889999999999998887654 88899999999998744 


Q ss_pred             hhhHhhhcCCCCccEEEeccCCCC
Q 039007          171 EYLFEHIGQLSGLRSLILVDCPSL  194 (360)
Q Consensus       171 ~~~~~~l~~l~~L~~L~l~~~~~~  194 (360)
                      ..+ ..+..+++|+.|++++|+..
T Consensus       188 ~~l-~~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          188 SDL-RALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             CBC-GGGTTCTTCSEEECCSEEEE
T ss_pred             CCC-hHHccCCCCCEEEccCCcCc
Confidence            334 35788999999999988543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.62  E-value=2.6e-15  Score=125.13  Aligned_cols=147  Identities=18%  Similarity=0.190  Sum_probs=105.9

Q ss_pred             eEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCccc-CcCCCCCCCcCeEe
Q 039007           14 RHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVL-PREIGNLKHMRYLD   92 (360)
Q Consensus        14 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~   92 (360)
                      +.+++.++.+..  ++..+.  +++++|++++|.+   ....+..|..+++|++|++++|.++.+ |..+..+++|++|+
T Consensus        14 ~~v~c~~~~l~~--iP~~l~--~~l~~L~l~~n~i---~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~   86 (220)
T 2v9t_B           14 NIVDCRGKGLTE--IPTNLP--ETITEIRLEQNTI---KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLV   86 (220)
T ss_dssp             TEEECTTSCCSS--CCSSCC--TTCCEEECCSSCC---CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEE
T ss_pred             CEEEcCCCCcCc--CCCccC--cCCCEEECCCCcC---CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEE
Confidence            345555555554  222232  5788888888876   344445677888888888888888754 66788888888888


Q ss_pred             ccccccccccch-hhhcCCccceEeeccccCcCcCCccccccccccEEEEecccccccc-ccCCCCCCCcEeeccCCC
Q 039007           93 LSRYCQIKKLPN-SICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQE-SGIACLSSLRSLIISHCW  168 (360)
Q Consensus        93 l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~  168 (360)
                      +++| .++.+|. .+..+++|+.|++++|.+....|..+..+++|+.|++++|.+...+ ..+..+++|+.|++.+|.
T Consensus        87 Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B           87 LYGN-KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCC-cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            8877 4555554 3577888888888887665555667788888888888888887664 457778888888888874

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.61  E-value=2e-15  Score=142.42  Aligned_cols=184  Identities=15%  Similarity=0.155  Sum_probs=141.0

Q ss_pred             cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEe
Q 039007           37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLI  116 (360)
Q Consensus        37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  116 (360)
                      +|+.|++++|.+..    ++..+  +++|++|++++|.++.+|   ..+++|++|++++| .++.+|. +..  +|+.|+
T Consensus        60 ~L~~L~Ls~n~L~~----lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~  126 (571)
T 3cvr_A           60 QFSELQLNRLNLSS----LPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLD  126 (571)
T ss_dssp             TCSEEECCSSCCSC----CCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEE
T ss_pred             CccEEEeCCCCCCc----cCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEE
Confidence            89999999998743    23222  378999999999999888   45789999999988 5556777 654  999999


Q ss_pred             eccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcc
Q 039007          117 LRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLIS  196 (360)
Q Consensus       117 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  196 (360)
                      +++|.+. .+|.   .+++|+.|++++|.+..++.   .+++|+.|++++|.. +.+|. +.  ++|+.|++++|.. +.
T Consensus       127 Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L-~~lp~-l~--~~L~~L~Ls~N~L-~~  194 (571)
T 3cvr_A          127 VDNNQLT-MLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQL-TFLPE-LP--ESLEALDVSTNLL-ES  194 (571)
T ss_dssp             CCSSCCS-CCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC-SCCCC-CC--TTCCEEECCSSCC-SS
T ss_pred             CCCCcCC-CCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCC-CCcch-hh--CCCCEEECcCCCC-Cc
Confidence            9998544 4776   68899999999999988765   678999999999854 44666 54  8999999999854 47


Q ss_pred             cCcccCCCCCC-------CEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhh
Q 039007          197 LPSAVKCLSSS-------ETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWL  260 (360)
Q Consensus       197 ~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~  260 (360)
                      +|. +..  +|       +.|++++|....            .+.....+++|+.|+|++|...+.+|..+
T Consensus       195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~------------lp~~l~~l~~L~~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          195 LPA-VPV--RNHHSEETEIFFRCRENRITH------------IPENILSLDPTCTIILEDNPLSSRIRESL  250 (571)
T ss_dssp             CCC-CC----------CCEEEECCSSCCCC------------CCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred             hhh-HHH--hhhcccccceEEecCCCccee------------cCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence            777 443  67       999999986442            22234457899999999998877777655

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.61  E-value=3.1e-15  Score=124.64  Aligned_cols=150  Identities=15%  Similarity=0.089  Sum_probs=118.6

Q ss_pred             ceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccc-hHHHhhcCCCccEEEEeCCCCcccCc-CCCCCCCcCe
Q 039007           13 VRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESF-FTSCISKSQFLRVLDLDDSTIEVLPR-EIGNLKHMRY   90 (360)
Q Consensus        13 l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~   90 (360)
                      -+.+++.++.++.  ++..+  .+.+++|++++|.+.   .. ....|..+++|++|++++|.++.++. .+..+++|++
T Consensus        13 ~~~l~~s~n~l~~--iP~~~--~~~~~~L~L~~N~l~---~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~   85 (220)
T 2v70_A           13 GTTVDCSNQKLNK--IPEHI--PQYTAELRLNNNEFT---VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE   85 (220)
T ss_dssp             TTEEECCSSCCSS--CCSCC--CTTCSEEECCSSCCC---EECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CCEeEeCCCCccc--CccCC--CCCCCEEEcCCCcCC---ccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence            3578888887766  33333  345789999999874   22 22457889999999999999986655 6899999999


Q ss_pred             EeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccc-cccCCCCCCCcEeeccCCCc
Q 039007           91 LDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQ-ESGIACLSSLRSLIISHCWN  169 (360)
Q Consensus        91 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~  169 (360)
                      |++++|......+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+... +..+..+++|+.|++++|..
T Consensus        86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A           86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             EECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            99998855444455688999999999999876666677889999999999999998876 67888999999999998753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.60  E-value=5e-15  Score=124.18  Aligned_cols=147  Identities=20%  Similarity=0.200  Sum_probs=111.8

Q ss_pred             ceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcC-CCCCCCcCeE
Q 039007           13 VRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPRE-IGNLKHMRYL   91 (360)
Q Consensus        13 l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L   91 (360)
                      .+.++..++.+..  ++..+  .++|++|++++|.+   ....+..|.++++|++|++++|.+..+|.. +..+++|++|
T Consensus        21 ~~~v~c~~~~l~~--ip~~~--~~~L~~L~Ls~n~i---~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L   93 (229)
T 3e6j_A           21 GTTVDCRSKRHAS--VPAGI--PTNAQILYLHDNQI---TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVL   93 (229)
T ss_dssp             TTEEECTTSCCSS--CCSCC--CTTCSEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCEeEccCCCcCc--cCCCC--CCCCCEEEcCCCcc---CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEE
Confidence            3456666665544  22222  27889999998887   344456688889999999999998877654 6888999999


Q ss_pred             eccccccccccc-hhhhcCCccceEeeccccCcCcCCccccccccccEEEEecccccccc-ccCCCCCCCcEeeccCCC
Q 039007           92 DLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQE-SGIACLSSLRSLIISHCW  168 (360)
Q Consensus        92 ~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~  168 (360)
                      ++++| .++.++ ..+..+++|+.|++++|. +..+|..+..+++|+.|++++|.+...+ ..+..+++|+.|++.+|.
T Consensus        94 ~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A           94 DLGTN-QLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             ECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             ECCCC-cCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            99988 445554 446788999999999874 4478888888999999999999887765 457888999999998875

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.59  E-value=1.3e-14  Score=120.75  Aligned_cols=147  Identities=18%  Similarity=0.167  Sum_probs=77.0

Q ss_pred             EEEEeCCCCcccCcCCCCCCCcCeEeccccccccccc-hhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccc
Q 039007           67 VLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQ  145 (360)
Q Consensus        67 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~  145 (360)
                      .++.+++.++.+|..+.  ++|+.|++++|. +..++ ..+..+++|+.|++++|.+....|..+..+++|+.|++++|.
T Consensus        15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             EEECTTSCCSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCcCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            44555555555554432  455555555552 22332 345555555555555554443334555555555555555555


Q ss_pred             cccccc-cCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCc
Q 039007          146 KSLQES-GIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCK  216 (360)
Q Consensus       146 ~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  216 (360)
                      +..++. .+..+++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++++
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            554432 24555666666666554433334455566666666666664433333445556666666666554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.59  E-value=2.2e-15  Score=129.15  Aligned_cols=167  Identities=18%  Similarity=0.159  Sum_probs=108.5

Q ss_pred             cCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccc
Q 039007           34 DLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQ  113 (360)
Q Consensus        34 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  113 (360)
                      .+.++..++++++.+.   +..  .+..+++|++|++++|.++.++ .+..+++|++|++++| .++.++. +..+++|+
T Consensus        17 ~l~~l~~l~l~~~~i~---~~~--~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~   88 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVT---DLV--SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLE   88 (263)
T ss_dssp             HHHHHHHHHHTCSCTT---SEE--CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCC
T ss_pred             HHHHHHHHHhcCCCcc---ccc--chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCC
Confidence            3445566666666542   111  2566777777777777777665 5677777777777776 4555555 77777777


Q ss_pred             eEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCC
Q 039007          114 TLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPS  193 (360)
Q Consensus       114 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  193 (360)
                      .|++++|. ...+|....  ++|+.|++++|.+...+ .+..+++|+.|++++|.. +.++ .+..+++|+.|++++|..
T Consensus        89 ~L~L~~N~-l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i-~~~~-~l~~l~~L~~L~L~~N~i  162 (263)
T 1xeu_A           89 ELSVNRNR-LKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKL-KSIV-MLGFLSKLEVLDLHGNEI  162 (263)
T ss_dssp             EEECCSSC-CSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCC-CBCG-GGGGCTTCCEEECTTSCC
T ss_pred             EEECCCCc-cCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcC-CCCh-HHccCCCCCEEECCCCcC
Confidence            77777763 334543322  77777777777776653 567777777777777643 3333 466777777888777754


Q ss_pred             CcccCcccCCCCCCCEEeecCCc
Q 039007          194 LISLPSAVKCLSSSETLILIDCK  216 (360)
Q Consensus       194 ~~~~~~~~~~~~~L~~L~l~~~~  216 (360)
                      ...  ..+..+++|+.|+++++.
T Consensus       163 ~~~--~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          163 TNT--GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             CBC--TTSTTCCCCCEEEEEEEE
T ss_pred             cch--HHhccCCCCCEEeCCCCc
Confidence            332  456667777777777654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.57  E-value=3e-15  Score=128.28  Aligned_cols=165  Identities=15%  Similarity=0.120  Sum_probs=133.8

Q ss_pred             cceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeE
Q 039007           12 RVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYL   91 (360)
Q Consensus        12 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L   91 (360)
                      ++..+.+..+.+.+   ...+..+++|++|++++|.+..    ++ .+..+++|++|++++|.++.++. +..+++|++|
T Consensus        20 ~l~~l~l~~~~i~~---~~~~~~l~~L~~L~l~~n~i~~----l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L   90 (263)
T 1xeu_A           20 NAVKQNLGKQSVTD---LVSQKELSGVQNFNGDNSNIQS----LA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHTCSCTTS---EECHHHHTTCSEEECTTSCCCC----CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEE
T ss_pred             HHHHHHhcCCCccc---ccchhhcCcCcEEECcCCCccc----ch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEE
Confidence            34556666666665   2267899999999999998742    23 47889999999999999998776 8999999999


Q ss_pred             eccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchh
Q 039007           92 DLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLE  171 (360)
Q Consensus        92 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  171 (360)
                      ++++| .++.++. +.. ++|+.|++++|... .++ .+..+++|+.|++++|.+...+ .+..+++|+.|++++|....
T Consensus        91 ~L~~N-~l~~l~~-~~~-~~L~~L~L~~N~l~-~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           91 SVNRN-RLKNLNG-IPS-ACLSRLFLDNNELR-DTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             ECCSS-CCSCCTT-CCC-SSCCEEECCSSCCS-BSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCB
T ss_pred             ECCCC-ccCCcCc-ccc-CcccEEEccCCccC-CCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcc
Confidence            99998 5666665 333 99999999998544 454 5889999999999999998874 78899999999999985544


Q ss_pred             hhHhhhcCCCCccEEEeccCCC
Q 039007          172 YLFEHIGQLSGLRSLILVDCPS  193 (360)
Q Consensus       172 ~~~~~l~~l~~L~~L~l~~~~~  193 (360)
                      .  ..+..+++|+.|++++|..
T Consensus       165 ~--~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          165 T--GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             C--TTSTTCCCCCEEEEEEEEE
T ss_pred             h--HHhccCCCCCEEeCCCCcc
Confidence            3  6688899999999999854

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.56  E-value=8.1e-15  Score=131.59  Aligned_cols=171  Identities=18%  Similarity=0.166  Sum_probs=104.0

Q ss_pred             eEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhh-cCCCccEEEEeCCCCcccC-cCCCCCCCcCeE
Q 039007           14 RHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCIS-KSQFLRVLDLDDSTIEVLP-REIGNLKHMRYL   91 (360)
Q Consensus        14 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L   91 (360)
                      +.+++.++.+..  ++..+  .+.++.|++++|.+   ....+..+. ++++|++|++++|.++.++ ..+..+++|++|
T Consensus        21 ~~l~c~~~~l~~--iP~~~--~~~l~~L~Ls~N~l---~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L   93 (361)
T 2xot_A           21 NILSCSKQQLPN--VPQSL--PSYTALLDLSHNNL---SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL   93 (361)
T ss_dssp             TEEECCSSCCSS--CCSSC--CTTCSEEECCSSCC---CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CEEEeCCCCcCc--cCccC--CCCCCEEECCCCCC---CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEE
Confidence            355666665554  22222  23467777777766   333334455 6777777777777777554 346777777777


Q ss_pred             eccccccccccc-hhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccC----CCCCCCcEeeccC
Q 039007           92 DLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGI----ACLSSLRSLIISH  166 (360)
Q Consensus        92 ~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~----~~l~~L~~L~l~~  166 (360)
                      ++++|. +..++ ..+..+++|+.|++++|.+....|..+..+++|+.|++++|.+..++..+    ..+++|+.|++++
T Consensus        94 ~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~  172 (361)
T 2xot_A           94 DLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS  172 (361)
T ss_dssp             ECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS
T ss_pred             ECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC
Confidence            777763 34443 44667777777777776555444556777777777777777776654333    4577777777777


Q ss_pred             CCchhhhHhhhcCCCC--ccEEEeccCC
Q 039007          167 CWNLEYLFEHIGQLSG--LRSLILVDCP  192 (360)
Q Consensus       167 ~~~~~~~~~~l~~l~~--L~~L~l~~~~  192 (360)
                      |.....-+..+..++.  ++.|++++|+
T Consensus       173 N~l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          173 NKLKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             SCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             CCCCccCHHHhhhccHhhcceEEecCCC
Confidence            6443322344555555  3667777765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=7e-15  Score=117.11  Aligned_cols=128  Identities=17%  Similarity=0.155  Sum_probs=70.0

Q ss_pred             ccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceE
Q 039007           36 RRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTL  115 (360)
Q Consensus        36 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  115 (360)
                      ++|++|++++|.+.  ...++..+..+++|++|++++|.++.+ ..+..+++|++|++++|...+.+|..+..+++|+.|
T Consensus        24 ~~L~~L~l~~n~l~--~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSN--DGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCB--TTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCC--hhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            45566666655542  123333345555666666666655544 455556666666666553333345545556666666


Q ss_pred             eeccccCcCcCC--ccccccccccEEEEeccccccccc----cCCCCCCCcEeeccCC
Q 039007          116 ILRGCLKLEELP--KDIRYLVSLRMFVVTTKQKSLQES----GIACLSSLRSLIISHC  167 (360)
Q Consensus       116 ~l~~~~~~~~~p--~~~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~L~~L~l~~~  167 (360)
                      ++++|. +..+|  ..+..+++|+.|++++|.+...+.    .+..+++|+.|++.+|
T Consensus       101 ~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A          101 NLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             ECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             eccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence            666653 33333  445566666666666666555443    4556666666666655

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.55  E-value=4.5e-14  Score=117.55  Aligned_cols=147  Identities=18%  Similarity=0.138  Sum_probs=73.9

Q ss_pred             EEEEeCCCCcccCcCCCCCCCcCeEecccccccccc-c-hhhhcCCccceEeeccccCcCcCCccccccccccEEEEecc
Q 039007           67 VLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKL-P-NSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTK  144 (360)
Q Consensus        67 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~  144 (360)
                      .++++++.++.+|..+.  +.+++|++++|. ++.+ + ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|
T Consensus        15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCcccCccCCC--CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            45555555555554332  234555555542 2222 2 22445555555555554333322334555555555555555


Q ss_pred             cccccc-ccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCc
Q 039007          145 QKSLQE-SGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCK  216 (360)
Q Consensus       145 ~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  216 (360)
                      .+...+ ..+..+++|++|++++|......+..+..+++|+.|++++|......|..+..+++|++|+++++.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            554432 235555555555555554333334445556666666666654444445555556666666665553

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.55  E-value=3.8e-14  Score=118.80  Aligned_cols=146  Identities=22%  Similarity=0.150  Sum_probs=68.3

Q ss_pred             EEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCC-ccccccccccEEEEeccc
Q 039007           67 VLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELP-KDIRYLVSLRMFVVTTKQ  145 (360)
Q Consensus        67 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~  145 (360)
                      .++.+++.+..+|..+.  ++|++|++++|...+..|..+..+++|+.|++++|.+ ..+| ..+..+++|+.|++++|.
T Consensus        23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ   99 (229)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCc
Confidence            34444444444444332  4455555554433222234444555555555555432 2333 223445555555555555


Q ss_pred             ccccc-ccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCc
Q 039007          146 KSLQE-SGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCK  216 (360)
Q Consensus       146 ~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  216 (360)
                      +...+ ..+..+++|+.|++++|. ++.+|..+..+++|+.|++++|......+..+..+++|+.|++.+++
T Consensus       100 l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          100 LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            44432 223455555555555542 22444445555555555555553332222334555666666665554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.54  E-value=1.5e-14  Score=129.86  Aligned_cols=126  Identities=17%  Similarity=0.102  Sum_probs=56.6

Q ss_pred             ccEEEEeCCCCcccCcC-CC-CCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEe
Q 039007           65 LRVLDLDDSTIEVLPRE-IG-NLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVT  142 (360)
Q Consensus        65 L~~L~l~~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~  142 (360)
                      +++|++++|.++.++.. +. .+++|++|++++|......+..+..+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  120 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY  120 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence            45555555555533332 33 45555555555542222222334555555555555543322222334455555555555


Q ss_pred             ccccccc-cccCCCCCCCcEeeccCCCchhhhHhhh----cCCCCccEEEeccC
Q 039007          143 TKQKSLQ-ESGIACLSSLRSLIISHCWNLEYLFEHI----GQLSGLRSLILVDC  191 (360)
Q Consensus       143 ~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l----~~l~~L~~L~l~~~  191 (360)
                      +|.+... +..+..+++|+.|++++|.. +.++..+    ..+++|+.|++++|
T Consensus       121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~~l~~L~~L~L~~N  173 (361)
T 2xot_A          121 NNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSN  173 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCGGGTC----CTTCCEEECCSS
T ss_pred             CCcccEECHHHhCCcccCCEEECCCCcC-CeeCHHHhcCcccCCcCCEEECCCC
Confidence            5554433 33445555555555555422 2222221    33455555555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.53  E-value=1.8e-16  Score=150.19  Aligned_cols=204  Identities=15%  Similarity=0.019  Sum_probs=124.2

Q ss_pred             CCCCCcCeEeccccccccccchhhhcCCccceEeecccc-------------CcCcCCccccccccccEEE-Eecccccc
Q 039007           83 GNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCL-------------KLEELPKDIRYLVSLRMFV-VTTKQKSL  148 (360)
Q Consensus        83 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~p~~~~~l~~L~~L~-l~~~~~~~  148 (360)
                      ..+++|+.|++++| .++.+|..++++++|++|++++|.             ..+..|..++.+++|+.|+ ++.+.+. 
T Consensus       346 ~~~~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            56788899999887 567888889999999999886653             2223334444555555544 3322211 


Q ss_pred             ccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccC
Q 039007          149 QESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEG  228 (360)
Q Consensus       149 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  228 (360)
                               .|+.+.+.+| .+..++.     ..|+.|++++|. ++.+|. ++.+++|+.|++++|....         
T Consensus       424 ---------~L~~l~l~~n-~i~~l~~-----~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~~---------  477 (567)
T 1dce_A          424 ---------DLRSKFLLEN-SVLKMEY-----ADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLRA---------  477 (567)
T ss_dssp             ---------HHHHHHHHHH-HHHHHHH-----TTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCCC---------
T ss_pred             ---------hhhhhhhhcc-cccccCc-----cCceEEEecCCC-CCCCcC-ccccccCcEeecCcccccc---------
Confidence                     1122222221 1122221     247777777773 344665 6677777777777765331         


Q ss_pred             CCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccc-cccccCccccccccccccccccCCC
Q 039007          229 EGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMAL-QGSLKDLEALETLLISACRKLSSLP  307 (360)
Q Consensus       229 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~  307 (360)
                         .+.....+++|+.|+|++|... .+| .+  ..+++|++|+|++|...... |..+..+++|+.|++++|++.+..+
T Consensus       478 ---lp~~~~~l~~L~~L~Ls~N~l~-~lp-~l--~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          478 ---LPPALAALRCLEVLQASDNALE-NVD-GV--ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             ---CCGGGGGCTTCCEEECCSSCCC-CCG-GG--TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             ---cchhhhcCCCCCEEECCCCCCC-CCc-cc--CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence               1223445567777777776533 466 44  77888899998888433333 7888888889999998888655433


Q ss_pred             c---cccCCCccceecc
Q 039007          308 E---DIHHLTTLKTLSI  321 (360)
Q Consensus       308 ~---~~~~~~~L~~L~l  321 (360)
                      .   .+..+|+|+.|++
T Consensus       551 ~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          551 IQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CTTHHHHHCTTCSEEEC
T ss_pred             HHHHHHHHCcccCccCC
Confidence            2   1233677877753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.53  E-value=1e-16  Score=151.83  Aligned_cols=178  Identities=14%  Similarity=0.098  Sum_probs=121.7

Q ss_pred             hccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCC-------------Cc-ccCcCCCCCCCcCeEe-cccc
Q 039007           32 LSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDST-------------IE-VLPREIGNLKHMRYLD-LSRY   96 (360)
Q Consensus        32 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~-~~~~~~~~l~~L~~L~-l~~~   96 (360)
                      +..+++|+.|++++|.+    ..+|..+.+|++|++|+++++.             .. ..|..+..+++|+.|+ ++.+
T Consensus       345 ~~~~~~L~~L~Ls~n~L----~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n  420 (567)
T 1dce_A          345 SATDEQLFRCELSVEKS----TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA  420 (567)
T ss_dssp             CSTTTTSSSCCCCHHHH----HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred             cccCccceeccCChhhH----HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc
Confidence            35677788888887764    3566777777788877775542             22 3445566677777777 4433


Q ss_pred             ccccccch------hhhc--CCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCC
Q 039007           97 CQIKKLPN------SICE--LQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCW  168 (360)
Q Consensus        97 ~~~~~~~~------~~~~--l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~  168 (360)
                       ....++.      .+..  ...|+.|++++|. +..+|. ++.+++|+.|++++|.+..+|..++.+++|+.|++++|.
T Consensus       421 -~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~  497 (567)
T 1dce_A          421 -YLDDLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA  497 (567)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             -ccchhhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC
Confidence             2222221      1111  2357888888864 445776 788888888888888888777788888888888888874


Q ss_pred             chhhhHhhhcCCCCccEEEeccCCCCccc-CcccCCCCCCCEEeecCCcCc
Q 039007          169 NLEYLFEHIGQLSGLRSLILVDCPSLISL-PSAVKCLSSSETLILIDCKSL  218 (360)
Q Consensus       169 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~  218 (360)
                      . +.+| .++.+++|+.|++++|...... |..++.+++|+.|++++|...
T Consensus       498 l-~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          498 L-ENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             C-CCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             C-CCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence            4 3455 6788888888888888554443 777888888888888887643

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.52  E-value=3.6e-14  Score=112.99  Aligned_cols=129  Identities=17%  Similarity=0.117  Sum_probs=98.6

Q ss_pred             CCCccEEEEeCCCCc--ccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEE
Q 039007           62 SQFLRVLDLDDSTIE--VLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMF  139 (360)
Q Consensus        62 l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L  139 (360)
                      .++|++|++++|.++  .+|..+..+++|++|++++|. ++.+ ..+..+++|+.|++++|...+.+|..+..+++|+.|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            477899999999887  788778888999999998884 5555 557888899999998886665577777778888999


Q ss_pred             EEecccccccc--ccCCCCCCCcEeeccCCCchhhhH---hhhcCCCCccEEEeccCC
Q 039007          140 VVTTKQKSLQE--SGIACLSSLRSLIISHCWNLEYLF---EHIGQLSGLRSLILVDCP  192 (360)
Q Consensus       140 ~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~~  192 (360)
                      ++++|.+...+  ..+..+++|+.|++++|......+   ..+..+++|+.|++++|.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            98888887754  577788888888888874333222   366777788888777774

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.51  E-value=6e-15  Score=143.90  Aligned_cols=163  Identities=15%  Similarity=0.143  Sum_probs=103.0

Q ss_pred             CcceEEEeeeccccccchhhhhccCccccEEEEeccCCC-CcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcC
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDEN-TSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMR   89 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~   89 (360)
                      +++++|++.++.+..  ....+.....|+.+.+...... ......+..+..++.|+.|++++|.+..+|..+..+++|+
T Consensus       173 ~~~~~l~L~~n~~~~--~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~  250 (727)
T 4b8c_D          173 PLTPKIELFANGKDE--ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT  250 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred             CccceEEeeCCCCCc--chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence            568888888877665  2223333333444443322210 0012456678899999999999999999998888999999


Q ss_pred             eEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCc
Q 039007           90 YLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWN  169 (360)
Q Consensus        90 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~  169 (360)
                      +|++++| .+..+|..++.+++|+.|+|++|.+. .+|..++.+++|++|++++|.+..+|..++.+++|+.|++++|..
T Consensus       251 ~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          251 RLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             CCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred             EEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence            9999998 55689988999999999999998655 889999999999999999999998888899999999999999976


Q ss_pred             hhhhHhhh
Q 039007          170 LEYLFEHI  177 (360)
Q Consensus       170 ~~~~~~~l  177 (360)
                      ....|..+
T Consensus       329 ~~~~p~~~  336 (727)
T 4b8c_D          329 EKQFLKIL  336 (727)
T ss_dssp             CSHHHHHH
T ss_pred             CCCChHHH
Confidence            55544433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.51  E-value=6.4e-14  Score=124.15  Aligned_cols=80  Identities=15%  Similarity=0.094  Sum_probs=47.7

Q ss_pred             CCCCCccceEEecCccCCCCchhhhhcCCCCCCc-EEecccCCCcccc-cccccCccccccccccccccccCCCccccCC
Q 039007          236 DNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQ-FLGIEDCPNFMAL-QGSLKDLEALETLLISACRKLSSLPEDIHHL  313 (360)
Q Consensus       236 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  313 (360)
                      +..+.+|+.+.+.++  +..++...+ ..+++|+ .+.+.+  .++.+ +.+|.+|++|+.+++.++.+..--+..|.++
T Consensus       246 F~~~~~L~~l~l~~n--i~~I~~~aF-~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~  320 (329)
T 3sb4_A          246 FAQKKYLLKIKLPHN--LKTIGQRVF-SNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNG  320 (329)
T ss_dssp             TTTCTTCCEEECCTT--CCEECTTTT-TTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTT
T ss_pred             hhCCCCCCEEECCcc--cceehHHHh-hCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCC
Confidence            444556666666654  444444433 5667777 777765  33333 3567777777777776665443334456667


Q ss_pred             Cccceec
Q 039007          314 TTLKTLS  320 (360)
Q Consensus       314 ~~L~~L~  320 (360)
                      ++|+.++
T Consensus       321 ~~L~~ly  327 (329)
T 3sb4_A          321 VPSKLIY  327 (329)
T ss_dssp             CCCCEEE
T ss_pred             cchhhhc
Confidence            7777664

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.49  E-value=2.5e-14  Score=111.52  Aligned_cols=126  Identities=15%  Similarity=0.105  Sum_probs=60.6

Q ss_pred             ccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceE
Q 039007           36 RRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTL  115 (360)
Q Consensus        36 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  115 (360)
                      ++|+.|++++|.+.  ...++..+..+++|++|++++|.++.+ ..+..+++|++|++++|...+.+|..+..+++|+.|
T Consensus        17 ~~l~~L~l~~n~l~--~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSN--EGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCB--TTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCC--hhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            45555555555542  122333445555555555555555544 445555556666665553333345444455555555


Q ss_pred             eeccccCcCc-CCccccccccccEEEEeccccccccc----cCCCCCCCcEeec
Q 039007          116 ILRGCLKLEE-LPKDIRYLVSLRMFVVTTKQKSLQES----GIACLSSLRSLII  164 (360)
Q Consensus       116 ~l~~~~~~~~-~p~~~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~L~~L~l  164 (360)
                      ++++|...+. .+..++.+++|+.|++++|.+...+.    .+..+++|+.|++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            5555432221 11344455555555555554443322    3344444444443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.48  E-value=3.7e-14  Score=110.54  Aligned_cols=126  Identities=16%  Similarity=0.096  Sum_probs=94.2

Q ss_pred             CCCccEEEEeCCCCc--ccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEE
Q 039007           62 SQFLRVLDLDDSTIE--VLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMF  139 (360)
Q Consensus        62 l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L  139 (360)
                      .++|+.|++++|.++  .+|..+..+++|++|++++| .+..+ ..+..+++|+.|++++|...+.+|..++.+++|+.|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            367889999999887  78888888999999999987 44555 557888899999998886665577777778888888


Q ss_pred             EEecccccccc--ccCCCCCCCcEeeccCCCchhhhH---hhhcCCCCccEEEec
Q 039007          140 VVTTKQKSLQE--SGIACLSSLRSLIISHCWNLEYLF---EHIGQLSGLRSLILV  189 (360)
Q Consensus       140 ~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~  189 (360)
                      ++++|.+...+  ..+..+++|+.|++++|......+   ..+..+++|+.|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            88888877643  667777888888888774333222   356667777777664

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.46  E-value=1e-12  Score=116.42  Aligned_cols=103  Identities=9%  Similarity=-0.049  Sum_probs=75.6

Q ss_pred             CCCCccEEEeccCCCCcccCc-ccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccc-eEEecCccCCCCc
Q 039007          179 QLSGLRSLILVDCPSLISLPS-AVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQ-KLFVSGLKQLLDL  256 (360)
Q Consensus       179 ~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~~~~~  256 (360)
                      .+++|+.+++.+|. ++.+++ .+.+|++|+.+++.++  +....          ...+..+.+|+ .+.+.+  .+..+
T Consensus       224 ~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~----------~~aF~~~~~L~~~l~l~~--~l~~I  288 (329)
T 3sb4_A          224 YMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIG----------QRVFSNCGRLAGTLELPA--SVTAI  288 (329)
T ss_dssp             HCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEEC----------TTTTTTCTTCCEEEEECT--TCCEE
T ss_pred             hcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceeh----------HHHhhCChhccEEEEEcc--cceEE
Confidence            48999999999875 445554 5788999999999875  33222          33466778899 999987  45566


Q ss_pred             hhhhhcCCCCCCcEEecccCCCcccccccccCccccccccc
Q 039007          257 PQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLI  297 (360)
Q Consensus       257 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l  297 (360)
                      +...+ ..|++|+++++.++.....-+..|.+|++|+.++.
T Consensus       289 ~~~aF-~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          289 EFGAF-MGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CTTTT-TTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             chhhh-hCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            54443 78999999999887443444558999999998863

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.41  E-value=1e-12  Score=106.85  Aligned_cols=124  Identities=17%  Similarity=0.154  Sum_probs=69.7

Q ss_pred             cEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccch--hhhcCCccceEeeccccCcCcCCccccccccccEEEEec
Q 039007           66 RVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPN--SICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTT  143 (360)
Q Consensus        66 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  143 (360)
                      +.++++++.++.+|..+..  +|++|++++| .++.++.  .+..+++|+.|++++|.+.+..|..+..+++|+.|++++
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            4566666666666654432  6666666665 3344432  256666666666666655544455666666666666666


Q ss_pred             ccccccc-ccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCC
Q 039007          144 KQKSLQE-SGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCP  192 (360)
Q Consensus       144 ~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  192 (360)
                      |.+...+ ..+..+++|+.|++++|...+..+..+..+++|+.|++++|+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            6665442 235555555555555554433334444455555555555553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.41  E-value=2.5e-13  Score=108.89  Aligned_cols=133  Identities=17%  Similarity=0.144  Sum_probs=97.3

Q ss_pred             hhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchh-hhc
Q 039007           30 SLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNS-ICE  108 (360)
Q Consensus        30 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~  108 (360)
                      +.+..+++|++|++++|.+...    +......++|++|++++|.++.+ ..+..+++|++|++++| .++.+|.. +..
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~i----~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~   86 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPVI----ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQA   86 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCSC----CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHH
T ss_pred             HhcCCcCCceEEEeeCCCCchh----HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhc
Confidence            3466788899999998886422    33233344889999999988876 67888889999999887 45555543 478


Q ss_pred             CCccceEeeccccCcCcCCc--cccccccccEEEEecccccccccc----CCCCCCCcEeeccCCCc
Q 039007          109 LQSLQTLILRGCLKLEELPK--DIRYLVSLRMFVVTTKQKSLQESG----IACLSSLRSLIISHCWN  169 (360)
Q Consensus       109 l~~L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~l~~~~~~~~~~~----~~~l~~L~~L~l~~~~~  169 (360)
                      +++|+.|++++|. ++.+|.  .+..+++|+.|++++|.+...+..    +..+++|+.|+++.|..
T Consensus        87 l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           87 LPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            8899999998874 455665  677888888888888887766543    66777788887777644

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.41  E-value=3.4e-14  Score=138.57  Aligned_cols=159  Identities=18%  Similarity=0.172  Sum_probs=100.0

Q ss_pred             ccccEEEEeccCCCCcccchHHHhhcCCCccEEEE-----eCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCC
Q 039007           36 RRVRTILFSINDENTSESFFTSCISKSQFLRVLDL-----DDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQ  110 (360)
Q Consensus        36 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l-----~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~  110 (360)
                      ++++.|++.++.+..    .+..+.....|+.+.+     ..+.+...+..+..++.|+.|++++| .+..+|..+..++
T Consensus       173 ~~~~~l~L~~n~~~~----~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~  247 (727)
T 4b8c_D          173 PLTPKIELFANGKDE----ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNL-QIFNISANIFKYD  247 (727)
T ss_dssp             -----------------------------------------------------CCCCCCEEECTTS-CCSCCCGGGGGCC
T ss_pred             CccceEEeeCCCCCc----chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCC-CCCCCChhhcCCC
Confidence            567888888777532    1222222223333332     22333344667888999999999988 4568888888999


Q ss_pred             ccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEecc
Q 039007          111 SLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVD  190 (360)
Q Consensus       111 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  190 (360)
                      +|+.|+|++|.+. .+|..++.+++|+.|++++|.+..+|..+..+++|++|++++|. ++.+|..++.+++|+.|++++
T Consensus       248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEG  325 (727)
T ss_dssp             SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTT
T ss_pred             CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCC
Confidence            9999999998555 89988999999999999999999888889999999999999984 467788899999999999999


Q ss_pred             CCCCcccCccc
Q 039007          191 CPSLISLPSAV  201 (360)
Q Consensus       191 ~~~~~~~~~~~  201 (360)
                      |.....+|..+
T Consensus       326 N~l~~~~p~~~  336 (727)
T 4b8c_D          326 NPLEKQFLKIL  336 (727)
T ss_dssp             SCCCSHHHHHH
T ss_pred             CccCCCChHHH
Confidence            98766555544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.38  E-value=8.5e-15  Score=119.96  Aligned_cols=134  Identities=19%  Similarity=0.226  Sum_probs=85.8

Q ss_pred             hccCccccEEEEeccCCCC---cccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhc
Q 039007           32 LSDLRRVRTILFSINDENT---SESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICE  108 (360)
Q Consensus        32 ~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  108 (360)
                      +.....++.++++.+.+..   ....++..+..+++|++|++++|.++.+| .+..+++|++|++++| .+..+|..+..
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~   91 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAV   91 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-Ccccccchhhc
Confidence            4444455555555444421   11223346777777888888777777766 6777777888887776 44566666666


Q ss_pred             CCccceEeeccccCcCcCCccccccccccEEEEecccccccc--ccCCCCCCCcEeeccCCCc
Q 039007          109 LQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQE--SGIACLSSLRSLIISHCWN  169 (360)
Q Consensus       109 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~  169 (360)
                      +++|+.|++++|... .+| .+..+++|+.|++++|.+...+  ..+..+++|+.|++.+|..
T Consensus        92 ~~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A           92 ADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHHCSEEEEEEEECC-CHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             CCcCCEEECcCCcCC-cCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence            777777877776433 344 4667777777777777766543  2566677777777777643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.38  E-value=4.9e-13  Score=107.24  Aligned_cols=129  Identities=22%  Similarity=0.205  Sum_probs=90.0

Q ss_pred             hhcCCCccEEEEeCCCCcccCcCCCCC-CCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCcc-ccccccc
Q 039007           59 ISKSQFLRVLDLDDSTIEVLPREIGNL-KHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKD-IRYLVSL  136 (360)
Q Consensus        59 ~~~l~~L~~L~l~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L  136 (360)
                      +.++++|++|++++|.++.+|. +..+ ++|++|++++| .++.+ ..+..+++|+.|++++|.+. .+|.. +..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCC
Confidence            5567788889998888887754 4444 48888888887 44445 45778888888888887444 45544 4778888


Q ss_pred             cEEEEeccccccccc--cCCCCCCCcEeeccCCCchhhhHh----hhcCCCCccEEEeccCC
Q 039007          137 RMFVVTTKQKSLQES--GIACLSSLRSLIISHCWNLEYLFE----HIGQLSGLRSLILVDCP  192 (360)
Q Consensus       137 ~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~  192 (360)
                      +.|++++|.+...+.  .+..+++|+.|++++|.. ...+.    .+..+++|+.|+++.|.
T Consensus        91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCC
Confidence            888888887766654  667777777777777643 33333    25666777777776664

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.38  E-value=3.7e-12  Score=103.61  Aligned_cols=99  Identities=17%  Similarity=0.212  Sum_probs=48.7

Q ss_pred             cEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccc
Q 039007           66 RVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQ  145 (360)
Q Consensus        66 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~  145 (360)
                      ++++++++.++.+|..+.  ++|++|++++| .++.+|..+..+++|+.|++++|.+....+..+..+++|+.|++++|.
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            345555555555554332  35555555554 334455555555555555555543333223345555555555555555


Q ss_pred             ccccc-ccCCCCCCCcEeeccCC
Q 039007          146 KSLQE-SGIACLSSLRSLIISHC  167 (360)
Q Consensus       146 ~~~~~-~~~~~l~~L~~L~l~~~  167 (360)
                      +..++ ..+..+++|+.|++++|
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N  112 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGN  112 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSS
T ss_pred             cCEeCHHHhCCCCCCCEEECCCC
Confidence            54432 23444444444444444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.36  E-value=2.5e-12  Score=104.54  Aligned_cols=105  Identities=24%  Similarity=0.180  Sum_probs=64.8

Q ss_pred             CccEEEEeCCCCcccCcC--CCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEE
Q 039007           64 FLRVLDLDDSTIEVLPRE--IGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVV  141 (360)
Q Consensus        64 ~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l  141 (360)
                      .|++|++++|.++.++..  +..+++|++|++++|...+..|..+..+++|++|++++|.+.+..|..+..+++|+.|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            566666666666655432  566666666666666443333555666666666666666544444445666667777777


Q ss_pred             eccccccc-cccCCCCCCCcEeeccCCC
Q 039007          142 TTKQKSLQ-ESGIACLSSLRSLIISHCW  168 (360)
Q Consensus       142 ~~~~~~~~-~~~~~~l~~L~~L~l~~~~  168 (360)
                      ++|.+... +..+..+++|+.|++++|.
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            76666544 4556666777777776664

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.35  E-value=4.9e-12  Score=102.87  Aligned_cols=105  Identities=27%  Similarity=0.290  Sum_probs=65.7

Q ss_pred             CCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEe
Q 039007           63 QFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVT  142 (360)
Q Consensus        63 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~  142 (360)
                      +.|++|++++|.++.+|..+..+++|++|++++|...+..+..|..+++|+.|++++|.+....|..+..+++|+.|+++
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            35666777777666666666666777777777663333333456667777777777664444334456667777777777


Q ss_pred             ccccccccc-cCCCCCCCcEeeccCC
Q 039007          143 TKQKSLQES-GIACLSSLRSLIISHC  167 (360)
Q Consensus       143 ~~~~~~~~~-~~~~l~~L~~L~l~~~  167 (360)
                      +|.+..++. .+..+++|+.|++.+|
T Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A          111 GNDISVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCCeeChhhhhcCccccEEEeCCC
Confidence            776665543 4556666667766665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.30  E-value=3.3e-14  Score=116.42  Aligned_cols=149  Identities=20%  Similarity=0.256  Sum_probs=111.6

Q ss_pred             hhcCCCccEEEEeCCCCc-------ccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCcccc
Q 039007           59 ISKSQFLRVLDLDDSTIE-------VLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIR  131 (360)
Q Consensus        59 ~~~l~~L~~L~l~~~~~~-------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~  131 (360)
                      +.....++.++++.+.+.       .+|..+..+++|++|++++| .+..+| .+..+++|+.|++++|. +..+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNL-IKKIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCC-cccccchhh
Confidence            344445555555544443       44447888999999999988 556677 68899999999999975 447888788


Q ss_pred             ccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhh-HhhhcCCCCccEEEeccCCCCcccCc----------c
Q 039007          132 YLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYL-FEHIGQLSGLRSLILVDCPSLISLPS----------A  200 (360)
Q Consensus       132 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~----------~  200 (360)
                      .+++|+.|++++|.+...+ .+..+++|+.|++++|.....- ...+..+++|+.|++++|+.....|.          .
T Consensus        91 ~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~  169 (198)
T 1ds9_A           91 VADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV  169 (198)
T ss_dssp             HHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred             cCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence            8899999999999988775 6778899999999987543321 24688899999999999865444333          2


Q ss_pred             cCCCCCCCEEe
Q 039007          201 VKCLSSSETLI  211 (360)
Q Consensus       201 ~~~~~~L~~L~  211 (360)
                      +..+++|+.|+
T Consensus       170 ~~~l~~L~~Ld  180 (198)
T 1ds9_A          170 VKRLPNLKKLD  180 (198)
T ss_dssp             HHHCSSCSEEC
T ss_pred             HHhCCCcEEEC
Confidence            56788888886

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.28  E-value=3.4e-10  Score=102.53  Aligned_cols=266  Identities=11%  Similarity=0.117  Sum_probs=162.0

Q ss_pred             hccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CCCCCCCcCeEeccccccccccc-hhhhcC
Q 039007           32 LSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EIGNLKHMRYLDLSRYCQIKKLP-NSICEL  109 (360)
Q Consensus        32 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l  109 (360)
                      +..+..++.+.+-.+-    ...-...|.++ +|+.+.+..+ ++.++. .|..+ +|+.+.+..  .+..++ ..|..|
T Consensus       109 ~~~~~~l~~i~ip~~i----~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c  179 (401)
T 4fdw_A          109 TEILKGYNEIILPNSV----KSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYC  179 (401)
T ss_dssp             EEECSSCSEEECCTTC----CEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT--TCCEECSSTTTTC
T ss_pred             EEecCCccEEEECCcc----CEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC--CccEehHHHhhCc
Confidence            4455667777776432    23334456665 6888887665 555544 35554 688888874  344443 567788


Q ss_pred             CccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhH-hhhcCCCCccEEEe
Q 039007          110 QSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLF-EHIGQLSGLRSLIL  188 (360)
Q Consensus       110 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l  188 (360)
                      ++|+.+++..+ .+..++...-.+.+|+.+.+..+-.......+.+|++|+.+.+..+  ++.+. ..+.. .+|+.+.+
T Consensus       180 ~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~l  255 (401)
T 4fdw_A          180 YNLKKADLSKT-KITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKL  255 (401)
T ss_dssp             TTCCEEECTTS-CCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEE
T ss_pred             ccCCeeecCCC-cceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEe
Confidence            88888888775 4555665443467888888875533333467788888888888763  23222 22333 67888888


Q ss_pred             ccCCCCccc-CcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCC
Q 039007          189 VDCPSLISL-PSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKT  267 (360)
Q Consensus       189 ~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~  267 (360)
                      ..+  +..+ ...+..|++|+.+.+.++.......      ..-....+..|.+|+.+.+...  +..++...+ .+|++
T Consensus       256 p~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~------~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF-~~c~~  324 (401)
T 4fdw_A          256 PNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPE------AMIHPYCLEGCPKLARFEIPES--IRILGQGLL-GGNRK  324 (401)
T ss_dssp             ETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTT------CEECTTTTTTCTTCCEECCCTT--CCEECTTTT-TTCCS
T ss_pred             CCC--ccEEChhHhhCCCCCCEEEeCCccccCCcc------cEECHHHhhCCccCCeEEeCCc--eEEEhhhhh-cCCCC
Confidence            543  3344 3456778888888887654320000      0001234556677888887742  445554443 67788


Q ss_pred             CcEEecccCCCcccc-cccccCccccccccccccccccCCCccccCCC-ccceecccCC
Q 039007          268 LQFLGIEDCPNFMAL-QGSLKDLEALETLLISACRKLSSLPEDIHHLT-TLKTLSIKEC  324 (360)
Q Consensus       268 L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~c  324 (360)
                      |+.+.|..+  ++.+ ..+|.+| +|+.+++.++.........+..++ +++.|.+...
T Consensus       325 L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          325 VTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             CCEEEECTT--CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred             ccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence            888888653  4433 4467777 888888888764443344455564 6777777654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.26  E-value=3.2e-11  Score=96.62  Aligned_cols=104  Identities=23%  Similarity=0.285  Sum_probs=48.0

Q ss_pred             CCccEEEEeCCCCcccCc-CCCCCCCcCeEeccccccccccc-hhhhcCCccceEeeccccCcCcCCccccccccccEEE
Q 039007           63 QFLRVLDLDDSTIEVLPR-EIGNLKHMRYLDLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFV  140 (360)
Q Consensus        63 ~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~  140 (360)
                      ++|++|++++|.++.++. .+..+++|++|++++| .++.++ ..+..+++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            345555555555554433 2345555555555554 223333 2234555555555555433322222344455555555


Q ss_pred             Eecccccccccc-CCCCCCCcEeeccCC
Q 039007          141 VTTKQKSLQESG-IACLSSLRSLIISHC  167 (360)
Q Consensus       141 l~~~~~~~~~~~-~~~l~~L~~L~l~~~  167 (360)
                      +++|.+...+.. +..+++|+.|++++|
T Consensus       107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A          107 LDTNQLKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcCCcceEeCHHHhcCCcccCEEEecCC
Confidence            555544443322 234444444444444

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.26  E-value=1.6e-11  Score=98.47  Aligned_cols=128  Identities=19%  Similarity=0.186  Sum_probs=94.3

Q ss_pred             ceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcC-CCCCCCcCeE
Q 039007           13 VRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPRE-IGNLKHMRYL   91 (360)
Q Consensus        13 l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L   91 (360)
                      .+.+++.++.+..  ++..  -.++|++|++++|.+.   ...+..+..+++|++|++++|.++.++.. +..+++|++|
T Consensus         9 ~~~l~~~~~~l~~--~p~~--~~~~l~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   81 (177)
T 2o6r_A            9 GTEIRCNSKGLTS--VPTG--IPSSATRLELESNKLQ---SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL   81 (177)
T ss_dssp             TTEEECCSSCCSS--CCTT--CCTTCSEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCEEEecCCCCcc--CCCC--CCCCCcEEEeCCCccc---EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEE
Confidence            4567777777665  2222  2368899999998873   34445578889999999999998876654 6888999999


Q ss_pred             eccccccccccc-hhhhcCCccceEeeccccCcCcCCcc-ccccccccEEEEeccccccc
Q 039007           92 DLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELPKD-IRYLVSLRMFVVTTKQKSLQ  149 (360)
Q Consensus        92 ~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~  149 (360)
                      ++++|. ++.++ ..+..+++|+.|++++|.+. .+|.. +..+++|+.|++++|.+...
T Consensus        82 ~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           82 YLHENK-LQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             ECCCCC-ccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeecc
Confidence            999884 44554 44678899999999987544 55544 57889999999998876543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.26  E-value=2e-10  Score=104.02  Aligned_cols=245  Identities=10%  Similarity=0.103  Sum_probs=161.0

Q ss_pred             hhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC-cCCCCCCCcCeEeccccccccccchhhh
Q 039007           29 SSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-REIGNLKHMRYLDLSRYCQIKKLPNSIC  107 (360)
Q Consensus        29 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~  107 (360)
                      ..+|.++ +|+.+.+..+ +   ...-...|.++ +|+.+.+.. .++.++ ..|..|++|+.+++..+ .+..++....
T Consensus       129 ~~aF~~~-~L~~i~l~~~-i---~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF  200 (401)
T 4fdw_A          129 KDAFRNS-QIAKVVLNEG-L---KSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTF  200 (401)
T ss_dssp             TTTTTTC-CCSEEECCTT-C---CEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTT
T ss_pred             HhhcccC-CccEEEeCCC-c---cEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhE
Confidence            4566776 6888888755 2   23333456665 588888875 556554 45788899999999865 5666665444


Q ss_pred             cCCccceEeeccccCcCcCC-ccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEE
Q 039007          108 ELQSLQTLILRGCLKLEELP-KDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSL  186 (360)
Q Consensus       108 ~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  186 (360)
                      .+.+|+.+.+..+  +..++ ..+..+++|+.+.+..+-.......+.+ ++|+.+.+..+ ....-...+..|++|+.+
T Consensus       201 ~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l  276 (401)
T 4fdw_A          201 VYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPNG-VTNIASRAFYYCPELAEV  276 (401)
T ss_dssp             TTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEETT-CCEECTTTTTTCTTCCEE
T ss_pred             eecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCCC-ccEEChhHhhCCCCCCEE
Confidence            4788888888753  44444 4567888899888877533333345555 78888888542 222224557788999999


Q ss_pred             EeccCCCC----ccc-CcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhh
Q 039007          187 ILVDCPSL----ISL-PSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLL  261 (360)
Q Consensus       187 ~l~~~~~~----~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~  261 (360)
                      .+.++...    ..+ ...+..|++|+.+.+.+.  +....          ...+..|.+|+.+.|..+  +..+....+
T Consensus       277 ~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~----------~~aF~~c~~L~~l~lp~~--l~~I~~~aF  342 (401)
T 4fdw_A          277 TTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILG----------QGLLGGNRKVTQLTIPAN--VTQINFSAF  342 (401)
T ss_dssp             EEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEEC----------TTTTTTCCSCCEEEECTT--CCEECTTSS
T ss_pred             EeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEh----------hhhhcCCCCccEEEECcc--ccEEcHHhC
Confidence            98776432    122 345778899999988742  22221          223556778999999654  455554444


Q ss_pred             cCCCCCCcEEecccCCCcccccccccCcc-ccccccccccc
Q 039007          262 QGSTKTLQFLGIEDCPNFMALQGSLKDLE-ALETLLISACR  301 (360)
Q Consensus       262 ~~~~~~L~~L~L~~~~~~~~~~~~~~~l~-~L~~L~l~~~~  301 (360)
                       ..+ +|+++.+.++.........|.+++ +++.|++..+.
T Consensus       343 -~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          343 -NNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             -SSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             -CCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence             566 899999998854444455677774 67888887654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.08  E-value=6.3e-10  Score=88.69  Aligned_cols=99  Identities=17%  Similarity=0.197  Sum_probs=55.4

Q ss_pred             cEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCcc-ccccccccEEEEecc
Q 039007           66 RVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKD-IRYLVSLRMFVVTTK  144 (360)
Q Consensus        66 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~l~~~  144 (360)
                      +.++++++.++.+|..+.  ++|++|++++|...+..|..+..+++|+.|++++|. +..+|.. +..+++|+.|++++|
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC
Confidence            456666666666665443  566666666653333334455666666666666653 3334432 456666666666666


Q ss_pred             ccccccc-cCCCCCCCcEeeccCC
Q 039007          145 QKSLQES-GIACLSSLRSLIISHC  167 (360)
Q Consensus       145 ~~~~~~~-~~~~l~~L~~L~l~~~  167 (360)
                      .+..++. .+..+++|+.|++.+|
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSS
T ss_pred             ccceeCHHHhccccCCCEEEeCCC
Confidence            6655443 2555666666666555

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.07  E-value=5.9e-10  Score=88.53  Aligned_cols=100  Identities=19%  Similarity=0.143  Sum_probs=56.6

Q ss_pred             ccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCC-ccccccccccEEEEec
Q 039007           65 LRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELP-KDIRYLVSLRMFVVTT  143 (360)
Q Consensus        65 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~  143 (360)
                      .+.++++++.++.+|..+.  ++|++|++++|...+..|..+..+++|++|++++|.+. .+| ..+..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECCC
Confidence            3556666666666665442  56666666665333333445666666666666665433 333 2345666666666666


Q ss_pred             cccccccc-cCCCCCCCcEeeccCC
Q 039007          144 KQKSLQES-GIACLSSLRSLIISHC  167 (360)
Q Consensus       144 ~~~~~~~~-~~~~l~~L~~L~l~~~  167 (360)
                      |.+..++. .+..+++|+.|++++|
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCC
Confidence            66655433 3555666666666655

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.05  E-value=9e-09  Score=93.24  Aligned_cols=274  Identities=12%  Similarity=0.113  Sum_probs=134.5

Q ss_pred             hhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC-cCCCCCCCcCeEeccccccccccc---
Q 039007           28 FSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-REIGNLKHMRYLDLSRYCQIKKLP---  103 (360)
Q Consensus        28 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~---  103 (360)
                      -..+|.+|.+|+++.+..+ +   ...-..+|.+|.+|+.+.+..+ ++.++ ..+..+..|+.+.+...  +..+.   
T Consensus        63 g~~AF~~c~~L~~i~lp~~-i---~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~a  135 (394)
T 4fs7_A           63 GYAAFQGCRKVTEIKIPST-V---REIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM--LKSIGVEA  135 (394)
T ss_dssp             CTTTTTTCTTEEEEECCTT-C---CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEECTTT
T ss_pred             HHHHhhCCCCceEEEeCCC-c---cCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc--eeeeccee
Confidence            3567999999999999743 2   2333456999999999999754 45443 34677777777666532  22111   


Q ss_pred             --------------------hhhhcCCccceEeeccccCcCcCC-ccccccccccEEEEeccccccccccCCCCCCCcEe
Q 039007          104 --------------------NSICELQSLQTLILRGCLKLEELP-KDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSL  162 (360)
Q Consensus       104 --------------------~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L  162 (360)
                                          ..|..+.+|+.+.+..+  ...++ ..+..+.+|+.+.+..+-.......+.++..|+.+
T Consensus       136 F~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i  213 (394)
T 4fs7_A          136 FKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENM  213 (394)
T ss_dssp             TTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBC
T ss_pred             eecccccccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCCceEeCchhhcccccccee
Confidence                                22344455555555432  11222 22344455555554443222222344445555554


Q ss_pred             eccCCCchhhhHhhhcCCCCccEEEeccCCCCccc-CcccCCCCCCCEEeecCCcCcccccccccc-----------CCC
Q 039007          163 IISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISL-PSAVKCLSSSETLILIDCKSLNLNLNIEME-----------GEG  230 (360)
Q Consensus       163 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----------~~~  230 (360)
                      .+..+.  ..+......+.+|+.+.+...  ...+ ...+..+..++.+.+.......  ....+.           ...
T Consensus       214 ~~~~~~--~~i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~~i--~~~~F~~~~~l~~~~~~~~~  287 (394)
T 4fs7_A          214 EFPNSL--YYLGDFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKLRI--GGSLFYNCSGLKKVIYGSVI  287 (394)
T ss_dssp             CCCTTC--CEECTTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTCEE--CSCTTTTCTTCCEEEECSSE
T ss_pred             ecCCCc--eEeehhhcccCCCceEEECCC--ceecccccccccccceeEEcCCCccee--eccccccccccceeccCcee
Confidence            443321  111111223345555555332  1111 1234455566666554321100  000000           000


Q ss_pred             CCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccc-cccccCccccccccccccccccCC-Cc
Q 039007          231 SHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMAL-QGSLKDLEALETLLISACRKLSSL-PE  308 (360)
Q Consensus       231 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~-~~  308 (360)
                      -....+..+.+|+.+.+..+  +..++...+ ..|++|+.+.+...  ++.+ ..+|.+|++|+.+++..+  ++.+ ..
T Consensus       288 i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF-~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~  360 (394)
T 4fs7_A          288 VPEKTFYGCSSLTEVKLLDS--VKFIGEEAF-ESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS--LRKIGAN  360 (394)
T ss_dssp             ECTTTTTTCTTCCEEEECTT--CCEECTTTT-TTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTT
T ss_pred             eccccccccccccccccccc--cceechhhh-cCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc--ccEehHH
Confidence            01122344556666666542  334433332 56677777777542  4433 345677777777777554  2222 34


Q ss_pred             cccCCCccceecccC
Q 039007          309 DIHHLTTLKTLSIKE  323 (360)
Q Consensus       309 ~~~~~~~L~~L~l~~  323 (360)
                      .+.+|++|+.+.+..
T Consensus       361 aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          361 AFQGCINLKKVELPK  375 (394)
T ss_dssp             TBTTCTTCCEEEEEG
T ss_pred             HhhCCCCCCEEEECC
Confidence            466677777777643

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.03  E-value=3.6e-11  Score=107.93  Aligned_cols=161  Identities=12%  Similarity=0.012  Sum_probs=103.1

Q ss_pred             CccccEEEEeccCCCCc-ccchHHHhh-cCCCccEEEEeCCCCc--ccCcCCCCCCCcCeEeccccccccccchhh----
Q 039007           35 LRRVRTILFSINDENTS-ESFFTSCIS-KSQFLRVLDLDDSTIE--VLPREIGNLKHMRYLDLSRYCQIKKLPNSI----  106 (360)
Q Consensus        35 ~~~L~~L~l~~~~~~~~-~~~~~~~~~-~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----  106 (360)
                      .++|++|++++|.++.. ...+...+. .++.|++|++++|.++  .+......+++|++|++++|.........+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            35678888888876411 112223333 2367888888888876  222222345678888888874433222223    


Q ss_pred             -hcCCccceEeeccccCcC----cCCccccccccccEEEEeccccccc-----cccCCCCCCCcEeeccCCCchh----h
Q 039007          107 -CELQSLQTLILRGCLKLE----ELPKDIRYLVSLRMFVVTTKQKSLQ-----ESGIACLSSLRSLIISHCWNLE----Y  172 (360)
Q Consensus       107 -~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~----~  172 (360)
                       ...++|+.|++++|.+..    .++..+..+++|++|++++|.+...     ...+...++|+.|++++|....    .
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             235778888888875432    2334456678888888888877542     3456677889999999886543    3


Q ss_pred             hHhhhcCCCCccEEEeccCCCCc
Q 039007          173 LFEHIGQLSGLRSLILVDCPSLI  195 (360)
Q Consensus       173 ~~~~l~~l~~L~~L~l~~~~~~~  195 (360)
                      +...+...+.|++|++++|....
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCH
Confidence            45556677899999999987544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.01  E-value=1.3e-09  Score=86.60  Aligned_cols=103  Identities=23%  Similarity=0.165  Sum_probs=67.5

Q ss_pred             ccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCccc-CcCCCCCCCcCeEeccccccccccch-hhhcCCccceE
Q 039007           38 VRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVL-PREIGNLKHMRYLDLSRYCQIKKLPN-SICELQSLQTL  115 (360)
Q Consensus        38 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L  115 (360)
                      .++++++++.+......    +  .+.|++|++++|.++.+ |..+..+++|++|++++| .+..++. .+..+++|+.|
T Consensus        11 ~~~l~~s~n~l~~ip~~----~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L   83 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTG----I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQL   83 (170)
T ss_dssp             TTEEECTTSCCSSCCSC----C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCEEEeCCCCcCccCcc----C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEE
Confidence            46677777765322221    1  25677888888877755 455777888888888877 4445543 45677888888


Q ss_pred             eeccccCcCcCCccccccccccEEEEeccccc
Q 039007          116 ILRGCLKLEELPKDIRYLVSLRMFVVTTKQKS  147 (360)
Q Consensus       116 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~  147 (360)
                      ++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus        84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            88876444333334777888888888877654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.99  E-value=1.6e-08  Score=91.69  Aligned_cols=278  Identities=13%  Similarity=0.087  Sum_probs=156.8

Q ss_pred             CCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCC--------------
Q 039007            9 IPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDST--------------   74 (360)
Q Consensus         9 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--------------   74 (360)
                      -...++.+.|.. .+.. .-..+|.+|++|+.+++..+-    ...-...|.+|..|+.+.+..+-              
T Consensus        69 ~c~~L~~i~lp~-~i~~-I~~~aF~~c~~L~~i~lp~~l----~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~  142 (394)
T 4fs7_A           69 GCRKVTEIKIPS-TVRE-IGEFAFENCSKLEIINIPDSV----KMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFK  142 (394)
T ss_dssp             TCTTEEEEECCT-TCCE-ECTTTTTTCTTCCEECCCTTC----CEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCS
T ss_pred             CCCCceEEEeCC-CccC-cchhHhhCCCCCcEEEeCCCc----eEccchhhcccccchhhcccCceeeecceeeeccccc
Confidence            345678888753 2433 345789999999999987542    22223456777777665543221              


Q ss_pred             -------Cccc-CcCCCCCCCcCeEeccccccccccc-hhhhcCCccceEeeccccCcCcCC-ccccccccccEEEEecc
Q 039007           75 -------IEVL-PREIGNLKHMRYLDLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELP-KDIRYLVSLRMFVVTTK  144 (360)
Q Consensus        75 -------~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~  144 (360)
                             ...+ ...|..|.+|+.+.+...  ...++ ..|..+.+|+.+.+..+  +..++ ..+..+..|+.+.+..+
T Consensus       143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~  218 (394)
T 4fs7_A          143 EITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS  218 (394)
T ss_dssp             EEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT
T ss_pred             ccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC
Confidence                   1111 234677888888888753  33333 45677888888888653  22222 23445555555544333


Q ss_pred             cccc----------------------ccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccC
Q 039007          145 QKSL----------------------QESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVK  202 (360)
Q Consensus       145 ~~~~----------------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  202 (360)
                      ....                      ....+..+..++.+.+..+ ........+..+..++.+......   .....+.
T Consensus       219 ~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~  294 (394)
T 4fs7_A          219 LYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFY  294 (394)
T ss_dssp             CCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE---ECTTTTT
T ss_pred             ceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCC-cceeeccccccccccceeccCcee---ecccccc
Confidence            2211                      1123334444444444332 111111223344555544443321   1112345


Q ss_pred             CCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccc
Q 039007          203 CLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMAL  282 (360)
Q Consensus       203 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~  282 (360)
                      .+.+|+.+.+.+.  +...+          ...+..|.+|+.+.+...  +..+....+ .+|.+|+.+.+..+  ++.+
T Consensus       295 ~~~~L~~i~l~~~--i~~I~----------~~aF~~c~~L~~i~lp~~--v~~I~~~aF-~~c~~L~~i~lp~~--l~~I  357 (394)
T 4fs7_A          295 GCSSLTEVKLLDS--VKFIG----------EEAFESCTSLVSIDLPYL--VEEIGKRSF-RGCTSLSNINFPLS--LRKI  357 (394)
T ss_dssp             TCTTCCEEEECTT--CCEEC----------TTTTTTCTTCCEECCCTT--CCEECTTTT-TTCTTCCEECCCTT--CCEE
T ss_pred             ccccccccccccc--cceec----------hhhhcCCCCCCEEEeCCc--ccEEhHHhc-cCCCCCCEEEECcc--ccEe
Confidence            6677777777542  21111          223556788999998643  555654443 78899999999764  4444


Q ss_pred             -cccccCccccccccccccccccCCCccccCCCcccee
Q 039007          283 -QGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTL  319 (360)
Q Consensus       283 -~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  319 (360)
                       ..+|.+|++|+.+++..+  ++.+...+.+|++|+.+
T Consensus       358 ~~~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          358 GANAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CTTTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred             hHHHhhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence             457999999999999764  33344567788888775

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.98  E-value=1.2e-09  Score=87.01  Aligned_cols=103  Identities=14%  Similarity=0.194  Sum_probs=82.4

Q ss_pred             ceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcC-CCCCCCcCeE
Q 039007           13 VRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPRE-IGNLKHMRYL   91 (360)
Q Consensus        13 l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L   91 (360)
                      -+.+++.++.+..  ++..+.  ++|++|++++|.+   ....+..|.++++|++|++++|.++.+|.. +..+++|++|
T Consensus        14 ~~~l~~~~n~l~~--iP~~~~--~~L~~L~Ls~N~l---~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L   86 (174)
T 2r9u_A           14 QTLVNCQNIRLAS--VPAGIP--TDKQRLWLNNNQI---TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL   86 (174)
T ss_dssp             SSEEECCSSCCSS--CCSCCC--TTCSEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CcEEEeCCCCCCc--cCCCcC--CCCcEEEeCCCCc---cccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence            3578888888765  333343  7899999999987   445566789999999999999999988765 5889999999


Q ss_pred             eccccccccccch-hhhcCCccceEeeccccCc
Q 039007           92 DLSRYCQIKKLPN-SICELQSLQTLILRGCLKL  123 (360)
Q Consensus        92 ~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~  123 (360)
                      ++++| .+..+|. .+..+++|+.|++++|.+.
T Consensus        87 ~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           87 DLNDN-HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             ECCSS-CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ECCCC-ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            99988 5566665 4888999999999997443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.97  E-value=8e-11  Score=105.64  Aligned_cols=183  Identities=15%  Similarity=0.038  Sum_probs=122.1

Q ss_pred             cCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcc-----cCcCCC-CCCCcCeEeccccccccccchhh-
Q 039007           34 DLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEV-----LPREIG-NLKHMRYLDLSRYCQIKKLPNSI-  106 (360)
Q Consensus        34 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~-  106 (360)
                      .++..+.+++..|-....+..+..  .-.+.|++|++++|.++.     +...+. ..++|++|++++|.........+ 
T Consensus        45 ~~~~~~~lnl~~cl~e~~~~~l~~--~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~  122 (372)
T 3un9_A           45 VLPPSELLDHLFFHYEFQNQRFSA--EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLL  122 (372)
T ss_dssp             CSCHHHHHHHHHHHHHHHTHHHHH--HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTH
T ss_pred             CCChhhhHHHHHHHHHhcCHHHHH--HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHH
Confidence            344455555555432111222222  234679999999999872     222333 34799999999985433323223 


Q ss_pred             hcCCccceEeeccccCcCcCCccc-----cccccccEEEEeccccccc-----cccCCCCCCCcEeeccCCCchh----h
Q 039007          107 CELQSLQTLILRGCLKLEELPKDI-----RYLVSLRMFVVTTKQKSLQ-----ESGIACLSSLRSLIISHCWNLE----Y  172 (360)
Q Consensus       107 ~~l~~L~~L~l~~~~~~~~~p~~~-----~~l~~L~~L~l~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~----~  172 (360)
                      ..+++|+.|++++|.+...-...+     ...++|+.|++++|.+...     ...+..+++|++|++++|....    .
T Consensus       123 ~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~  202 (372)
T 3un9_A          123 PVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLEL  202 (372)
T ss_dssp             HHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHH
T ss_pred             HHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHH
Confidence            356789999999986543222222     2467899999999987642     3445678899999999987543    3


Q ss_pred             hHhhhcCCCCccEEEeccCCCCc----ccCcccCCCCCCCEEeecCCcCc
Q 039007          173 LFEHIGQLSGLRSLILVDCPSLI----SLPSAVKCLSSSETLILIDCKSL  218 (360)
Q Consensus       173 ~~~~l~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~  218 (360)
                      ++..+...++|++|++++|....    .+...+..+++|++|++++|...
T Consensus       203 L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          203 LAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            46667788999999999997643    34445566789999999998643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.95  E-value=1.2e-07  Score=85.87  Aligned_cols=271  Identities=10%  Similarity=0.163  Sum_probs=154.4

Q ss_pred             hhhhccCc-cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCC---CcccC-cCCCCCCCcCeEeccccccccccc
Q 039007           29 SSLLSDLR-RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDST---IEVLP-REIGNLKHMRYLDLSRYCQIKKLP  103 (360)
Q Consensus        29 ~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~  103 (360)
                      ..+|.+|+ .|+++.+-.+ +   ...-..+|.+|.+|+.+.+..+.   ++.+. ..|..|.+|+.+.+..+  +..++
T Consensus        56 ~~aF~~~~~~L~sI~iP~s-v---t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~  129 (394)
T 4gt6_A           56 DRVFCNYKYVLTSVQIPDT-V---TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEID  129 (394)
T ss_dssp             TTTTTTCCSCCCEEEECTT-C---CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEEC
T ss_pred             HhhccCCCCcCEEEEECCC-e---eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceeh
Confidence            45677775 5888888643 2   22334568888888888887653   44553 34677788887777643  44443


Q ss_pred             -hhhhcCCccceEeeccccCcCcCC-ccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCC
Q 039007          104 -NSICELQSLQTLILRGCLKLEELP-KDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLS  181 (360)
Q Consensus       104 -~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~  181 (360)
                       ..+..+.+|+.+.+...  ...++ ..+..+.+|+.+.+..+........+ ....|+.+.+.... .......+..+.
T Consensus       130 ~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF-~~~~l~~i~ip~~~-~~i~~~af~~c~  205 (394)
T 4gt6_A          130 SEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDSVTAIEERAF-TGTALTQIHIPAKV-TRIGTNAFSECF  205 (394)
T ss_dssp             TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTTCCEECTTTT-TTCCCSEEEECTTC-CEECTTTTTTCT
T ss_pred             hhhhhhhcccccccccce--eeeecccceecccccccccccceeeEeccccc-cccceeEEEECCcc-cccccchhhhcc
Confidence             44667788888877542  22222 23556667777666544222222222 23456666554321 111112233444


Q ss_pred             CccEEEeccCC-----------------------------------CCccc-CcccCCCCCCCEEeecCCcCcccccccc
Q 039007          182 GLRSLILVDCP-----------------------------------SLISL-PSAVKCLSSSETLILIDCKSLNLNLNIE  225 (360)
Q Consensus       182 ~L~~L~l~~~~-----------------------------------~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~  225 (360)
                      .++........                                   ....+ ...+..|..|+.+.+.+....  .    
T Consensus       206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~--I----  279 (394)
T 4gt6_A          206 ALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS--I----  279 (394)
T ss_dssp             TCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE--E----
T ss_pred             ccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce--e----
Confidence            44444332110                                   00011 123455666777666432111  0    


Q ss_pred             ccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccc-cccccCcccccccccccccccc
Q 039007          226 MEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMAL-QGSLKDLEALETLLISACRKLS  304 (360)
Q Consensus       226 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~  304 (360)
                            ....+..+..|+.+.+..  .+..++...+ ..|.+|+++.+..+  ++.+ ..+|.+|.+|+.+.|..+  ++
T Consensus       280 ------~~~aF~~c~~L~~i~l~~--~i~~I~~~aF-~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s--v~  346 (394)
T 4gt6_A          280 ------GTGAFMNCPALQDIEFSS--RITELPESVF-AGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS--VT  346 (394)
T ss_dssp             ------CTTTTTTCTTCCEEECCT--TCCEECTTTT-TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT--CC
T ss_pred             ------cCcccccccccccccCCC--cccccCceee-cCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc--cC
Confidence                  122345667888888853  3455555444 67889999999753  4444 447889999999999653  44


Q ss_pred             CC-CccccCCCccceecccCChhHH
Q 039007          305 SL-PEDIHHLTTLKTLSIKECPALW  328 (360)
Q Consensus       305 ~~-~~~~~~~~~L~~L~l~~c~~~~  328 (360)
                      .+ ...|.+|++|+.+.+.++....
T Consensus       347 ~I~~~aF~~C~~L~~i~~~~~~~~~  371 (394)
T 4gt6_A          347 KIPESAFSNCTALNNIEYSGSRSQW  371 (394)
T ss_dssp             BCCGGGGTTCTTCCEEEESSCHHHH
T ss_pred             EEhHhHhhCCCCCCEEEECCceeeh
Confidence            44 3457889999999998875433

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.92  E-value=8.3e-09  Score=91.86  Aligned_cols=106  Identities=9%  Similarity=0.137  Sum_probs=60.0

Q ss_pred             CcceEEEeeeccccccc-------hhhhhccCccccEEEEeccCCC------CcccchHHHhhcCCCccEEEEeCCCCcc
Q 039007           11 KRVRHLSFVSASASRND-------FSSLLSDLRRVRTILFSINDEN------TSESFFTSCISKSQFLRVLDLDDSTIEV   77 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~------~~~~~~~~~~~~l~~L~~L~l~~~~~~~   77 (360)
                      .+|++|.+......+..       +..+..++++|+.|.+......      .....+...+..+++|+.|.++++.-..
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~  186 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS  186 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence            45777777755443111       1233556778888887654321      0012355667777888888887763223


Q ss_pred             cCcCCCCCCCcCeEeccccccccccchhhh--cCCccceEeec
Q 039007           78 LPREIGNLKHMRYLDLSRYCQIKKLPNSIC--ELQSLQTLILR  118 (360)
Q Consensus        78 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~  118 (360)
                      ++. +. +++|+.|++..|.........+.  .+++|+.|+|.
T Consensus       187 l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          187 IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            333 32 67788888876643322222333  57778887774

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.77  E-value=1.9e-08  Score=89.47  Aligned_cols=87  Identities=17%  Similarity=0.184  Sum_probs=45.9

Q ss_pred             hhcCCCccEEEEeC-CCCcccC-cCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCcc-cccccc
Q 039007           59 ISKSQFLRVLDLDD-STIEVLP-REIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKD-IRYLVS  135 (360)
Q Consensus        59 ~~~l~~L~~L~l~~-~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~  135 (360)
                      +..+++|++|++++ |.+..+| ..|..+++|++|++++|...+..|..|..+++|+.|+|++|.+. .+|.. +..++ 
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~-  104 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLS-  104 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCC-
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHHcccCC-
Confidence            55556666666664 5566444 34556666666666665333333344556666666666665332 34433 22232 


Q ss_pred             ccEEEEeccccc
Q 039007          136 LRMFVVTTKQKS  147 (360)
Q Consensus       136 L~~L~l~~~~~~  147 (360)
                      |+.|++.+|.+.
T Consensus       105 L~~l~l~~N~~~  116 (347)
T 2ifg_A          105 LQELVLSGNPLH  116 (347)
T ss_dssp             CCEEECCSSCCC
T ss_pred             ceEEEeeCCCcc
Confidence            666666555443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.75  E-value=3.8e-08  Score=87.60  Aligned_cols=66  Identities=11%  Similarity=0.002  Sum_probs=37.1

Q ss_pred             CCccceEEecCccCCCCchhhhh-cCCCCCCcEEecccCCCcc----cccccccCcccccccccccccccc
Q 039007          239 RTHLQKLFVSGLKQLLDLPQWLL-QGSTKTLQFLGIEDCPNFM----ALQGSLKDLEALETLLISACRKLS  304 (360)
Q Consensus       239 ~~~L~~L~L~~~~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~  304 (360)
                      +++|+.|+|.+|......+..+. ...+++|++|+|+.|....    .++..+..+++|+.|++++|.+..
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            45566666655543322222221 1356778888887764332    234444567888888888876544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.73  E-value=7.2e-07  Score=80.67  Aligned_cols=285  Identities=9%  Similarity=0.055  Sum_probs=168.1

Q ss_pred             cceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC-cCCCCCCCcCe
Q 039007           12 RVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-REIGNLKHMRY   90 (360)
Q Consensus        12 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~   90 (360)
                      .++++.+-.. ++. .-..+|.+|.+|+.+.+..+.-......-...|..|..|+.+.+..+ ++.++ ..+..+.+|+.
T Consensus        65 ~L~sI~iP~s-vt~-Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~  141 (394)
T 4gt6_A           65 VLTSVQIPDT-VTE-IGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT  141 (394)
T ss_dssp             CCCEEEECTT-CCE-ECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred             cCEEEEECCC-eeE-EhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence            4677777542 333 34578999999999999876411112233456888888887766544 44443 35778888888


Q ss_pred             Eecccccccccc-chhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCC-
Q 039007           91 LDLSRYCQIKKL-PNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCW-  168 (360)
Q Consensus        91 L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~-  168 (360)
                      +.+...  ...+ ...+..+.+|+.+.+..+  +..+....-...+|+.+.+..+........+..+.++......... 
T Consensus       142 i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~  217 (394)
T 4gt6_A          142 VTIPEG--VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESY  217 (394)
T ss_dssp             EECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSS
T ss_pred             ccccce--eeeecccceecccccccccccce--eeEeccccccccceeEEEECCcccccccchhhhccccceeccccccc
Confidence            888643  3333 345677888888887653  3333332223346777766554333333444555555444322110 


Q ss_pred             ----------------------------------chh-hhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeec
Q 039007          169 ----------------------------------NLE-YLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILI  213 (360)
Q Consensus       169 ----------------------------------~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  213 (360)
                                                        .+. .-...+..|..|+.+.+.... ..--...+.+|+.|+.+.+.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~  296 (394)
T 4gt6_A          218 PAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS  296 (394)
T ss_dssp             CBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC
T ss_pred             ccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEeccccc-ceecCcccccccccccccCC
Confidence                                              001 112345678888888886532 12223446788999999885


Q ss_pred             CCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccc-cccccCcccc
Q 039007          214 DCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMAL-QGSLKDLEAL  292 (360)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~l~~L  292 (360)
                      ..  +....          ...+..|.+|+.+.|..+  +..+....+ ..|.+|+++.+..+  ++.+ ..+|.+|++|
T Consensus       297 ~~--i~~I~----------~~aF~~c~~L~~i~lp~~--v~~I~~~aF-~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L  359 (394)
T 4gt6_A          297 SR--ITELP----------ESVFAGCISLKSIDIPEG--ITQILDDAF-AGCEQLERIAIPSS--VTKIPESAFSNCTAL  359 (394)
T ss_dssp             TT--CCEEC----------TTTTTTCTTCCEEECCTT--CCEECTTTT-TTCTTCCEEEECTT--CCBCCGGGGTTCTTC
T ss_pred             Cc--ccccC----------ceeecCCCCcCEEEeCCc--ccEehHhHh-hCCCCCCEEEECcc--cCEEhHhHhhCCCCC
Confidence            32  22111          234566789999999753  455554443 78899999999753  4544 4579999999


Q ss_pred             ccccccccccccCCCccccCCCccceecccCC
Q 039007          293 ETLLISACRKLSSLPEDIHHLTTLKTLSIKEC  324 (360)
Q Consensus       293 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c  324 (360)
                      +.+++.++...-   ..+..+.+|+.+.+..+
T Consensus       360 ~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          360 NNIEYSGSRSQW---NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             CEEEESSCHHHH---HTCBCCCCC--------
T ss_pred             CEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence            999999875322   33556788888877543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.61  E-value=6.7e-08  Score=85.86  Aligned_cols=103  Identities=16%  Similarity=0.119  Sum_probs=80.4

Q ss_pred             eEEEeeec-cccccchhhhhccCccccEEEEec-cCCCCcccchHHHhhcCCCccEEEEeCCCCcccC-cCCCCCCCcCe
Q 039007           14 RHLSFVSA-SASRNDFSSLLSDLRRVRTILFSI-NDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-REIGNLKHMRY   90 (360)
Q Consensus        14 ~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~   90 (360)
                      ..++..++ .+..  ++. +..+++|++|+|++ |.+   ....+..|.++++|++|+|++|.++.++ ..|..+++|++
T Consensus        11 ~~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l---~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~   84 (347)
T 2ifg_A           11 SGLRCTRDGALDS--LHH-LPGAENLTELYIENQQHL---QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (347)
T ss_dssp             SCEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSC---CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CEEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCC---CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCE
Confidence            34566666 6665  555 99999999999996 887   5555677999999999999999999665 46899999999


Q ss_pred             EeccccccccccchhhhcCCccceEeeccccCc
Q 039007           91 LDLSRYCQIKKLPNSICELQSLQTLILRGCLKL  123 (360)
Q Consensus        91 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  123 (360)
                      |++++| .+..+|..+.....|+.|++.+|.+.
T Consensus        85 L~l~~N-~l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           85 LNLSFN-ALESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             EECCSS-CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             EeCCCC-ccceeCHHHcccCCceEEEeeCCCcc
Confidence            999988 56667654444334999999987543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.53  E-value=2.5e-08  Score=78.46  Aligned_cols=89  Identities=13%  Similarity=0.217  Sum_probs=59.9

Q ss_pred             CccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCccc-ccccccC----ccccccccccccccccC-CCccccCC
Q 039007          240 THLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMA-LQGSLKD----LEALETLLISACRKLSS-LPEDIHHL  313 (360)
Q Consensus       240 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~----l~~L~~L~l~~~~~~~~-~~~~~~~~  313 (360)
                      .+|+.|++++|. +++..-..+ ..+++|++|+|++|..+++ -...+..    +++|++|+|++|..+++ .-..+.++
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~  138 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF  138 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred             ceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence            357777777776 333322222 6788899999998877762 2223333    45799999999976653 23345678


Q ss_pred             CccceecccCChhHHhh
Q 039007          314 TTLKTLSIKECPALWER  330 (360)
Q Consensus       314 ~~L~~L~l~~c~~~~~~  330 (360)
                      ++|++|++++|+.+++.
T Consensus       139 ~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          139 RNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             TTCCEEEEESCTTCCCH
T ss_pred             CCCCEEECCCCCCCCch
Confidence            99999999999877753

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.50  E-value=3.6e-05  Score=68.99  Aligned_cols=125  Identities=13%  Similarity=0.138  Sum_probs=70.3

Q ss_pred             CCCCccEEEeccCCCCccc-CcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCch
Q 039007          179 QLSGLRSLILVDCPSLISL-PSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLP  257 (360)
Q Consensus       179 ~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~  257 (360)
                      .+.+|+.+.+...  ...+ ...+..+..|+.+.+...  +...          ....+..+.+|+.+.+...  +..++
T Consensus       215 ~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~--v~~I----------~~~aF~~~~~l~~i~l~~~--i~~i~  278 (379)
T 4h09_A          215 YGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN--VTSI----------GSFLLQNCTALKTLNFYAK--VKTVP  278 (379)
T ss_dssp             TCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT--CCEE----------CTTTTTTCTTCCEEEECCC--CSEEC
T ss_pred             cccccceeeeccc--eeEEccccccCCccceEEEcCCC--ccEe----------Cccccceeehhcccccccc--ceecc
Confidence            4455555555332  1222 223445666766666432  1111          1123445567777777542  34444


Q ss_pred             hhhhcCCCCCCcEEecccCCCcccc-cccccCccccccccccccccccCC-CccccCCCccceecccC
Q 039007          258 QWLLQGSTKTLQFLGIEDCPNFMAL-QGSLKDLEALETLLISACRKLSSL-PEDIHHLTTLKTLSIKE  323 (360)
Q Consensus       258 ~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~  323 (360)
                      ...+ ..|++|+.+.+.++ .++.+ ...|.+|.+|+.+.|..+  ++.+ ...+.+|.+|+.+.+..
T Consensus       279 ~~aF-~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          279 YLLC-SGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             TTTT-TTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCT
T ss_pred             cccc-cccccccccccccc-ccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECC
Confidence            4333 67788888888765 34433 456788888888888643  3333 34567788888888743

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.46  E-value=3.6e-05  Score=68.98  Aligned_cols=267  Identities=9%  Similarity=0.064  Sum_probs=156.2

Q ss_pred             hhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CCCCCCCcCeEeccccccccccchhhh
Q 039007           29 SSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EIGNLKHMRYLDLSRYCQIKKLPNSIC  107 (360)
Q Consensus        29 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~  107 (360)
                      .+++....+|+.+.+... +   ...-..+|.+|.+|+.+.+..+ ++.+.. .|..+ .|+.+.+..  .+..++....
T Consensus        39 ~~~~~~~~~i~~v~ip~~-v---t~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF  110 (379)
T 4h09_A           39 IPWYKDRDRISEVRVNSG-I---TSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME--RVKKFGDYVF  110 (379)
T ss_dssp             STTGGGGGGCSEEEECTT-E---EEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT--TCCEECTTTT
T ss_pred             ccccccccCCEEEEeCCC-c---cChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc--eeeEecccee
Confidence            456777888999888743 1   3333456889999999999754 555544 46666 577776653  3455543332


Q ss_pred             cCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchh------------hhHh
Q 039007          108 ELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLE------------YLFE  175 (360)
Q Consensus       108 ~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------~~~~  175 (360)
                      ...+|+.+.+..+  ...+....-...+++...+..+........+..+.+++.+.+.......            ....
T Consensus       111 ~~~~L~~i~lp~~--~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (379)
T 4h09_A          111 QGTDLDDFEFPGA--TTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILE  188 (379)
T ss_dssp             TTCCCSEEECCTT--CCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEE
T ss_pred             ccCCcccccCCCc--cccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceec
Confidence            3347888888653  2223222222235666666554333334566777888877765532211            0111


Q ss_pred             hhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCC
Q 039007          176 HIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLD  255 (360)
Q Consensus       176 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~  255 (360)
                      .+..+..+..+.+.... .......+..+..++.+.+...-  ...          .......+..|+.+.+..+  +..
T Consensus       189 ~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~~--~~i----------~~~~f~~~~~L~~i~lp~~--v~~  253 (379)
T 4h09_A          189 SYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSGV--TTL----------GDGAFYGMKALDEIAIPKN--VTS  253 (379)
T ss_dssp             ECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTTC--CEE----------CTTTTTTCSSCCEEEECTT--CCE
T ss_pred             cccccccccccccccce-eEEeecccccccccceeeeccce--eEE----------ccccccCCccceEEEcCCC--ccE
Confidence            12234445554443321 11112334556777777765421  111          1223456678888888654  444


Q ss_pred             chhhhhcCCCCCCcEEecccCCCccccc-ccccCccccccccccccccccCCCccccCCCccceecccC
Q 039007          256 LPQWLLQGSTKTLQFLGIEDCPNFMALQ-GSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKE  323 (360)
Q Consensus       256 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  323 (360)
                      +....+ ..+..|+.+.+...  +..++ ..|.+|++|+.+.+.++....--...+.+|.+|+.+.+..
T Consensus       254 I~~~aF-~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~  319 (379)
T 4h09_A          254 IGSFLL-QNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT  319 (379)
T ss_dssp             ECTTTT-TTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred             eCcccc-ceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence            544433 67889999999753  44443 4689999999999987654333345678899999999953

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.40  E-value=5.4e-08  Score=78.21  Aligned_cols=69  Identities=3%  Similarity=0.103  Sum_probs=35.4

Q ss_pred             hhhhhccCccccEEEEecc-CCCC-cccchHHHhhcCCCccEEEEeCCCCc-----ccCcCCCCCCCcCeEecccc
Q 039007           28 FSSLLSDLRRVRTILFSIN-DENT-SESFFTSCISKSQFLRVLDLDDSTIE-----VLPREIGNLKHMRYLDLSRY   96 (360)
Q Consensus        28 ~~~~~~~~~~L~~L~l~~~-~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~l~~L~~L~l~~~   96 (360)
                      +...+..++.|++|++++| .++. ....+...+...+.|++|++++|.+.     .+...+...+.|++|++++|
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N  103 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN  103 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence            3445556666666666666 5431 11223444555566666666666554     12233334455555555555

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.39  E-value=1.8e-07  Score=73.52  Aligned_cols=67  Identities=16%  Similarity=0.096  Sum_probs=36.3

Q ss_pred             CCccceEEecCccCCCCchhhhhcCC---CCCCcEEecccCCCcc-cccccccCccccccccccccccccC
Q 039007          239 RTHLQKLFVSGLKQLLDLPQWLLQGS---TKTLQFLGIEDCPNFM-ALQGSLKDLEALETLLISACRKLSS  305 (360)
Q Consensus       239 ~~~L~~L~L~~~~~~~~~~~~~~~~~---~~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~  305 (360)
                      +++|++|+|++|..+++.....++..   +++|++|+|++|..++ .-...+..+++|++|++++|+.+++
T Consensus        84 ~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A           84 LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             CSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             CCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence            34444444444444433332222121   3467777777776665 2223356677777777777776654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.28  E-value=4.8e-07  Score=72.61  Aligned_cols=113  Identities=9%  Similarity=0.057  Sum_probs=84.6

Q ss_pred             CCcceEEEeeec-ccccc---chhhhhccCccccEEEEeccCCCCc-ccchHHHhhcCCCccEEEEeCCCCc-----ccC
Q 039007           10 PKRVRHLSFVSA-SASRN---DFSSLLSDLRRVRTILFSINDENTS-ESFFTSCISKSQFLRVLDLDDSTIE-----VLP   79 (360)
Q Consensus        10 ~~~l~~L~l~~~-~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~-----~~~   79 (360)
                      .+.++.|++.++ .+...   .+...+...++|++|++++|.++.. ...+...+...+.|++|++++|.+.     .+.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            467999999998 88763   3456677889999999999997521 2235666778899999999999987     245


Q ss_pred             cCCCCCCCcCeEec--cccccccc----cchhhhcCCccceEeeccccC
Q 039007           80 REIGNLKHMRYLDL--SRYCQIKK----LPNSICELQSLQTLILRGCLK  122 (360)
Q Consensus        80 ~~~~~l~~L~~L~l--~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~  122 (360)
                      ..+...+.|++|++  ++|.....    +...+...++|++|++++|..
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            66778889999999  76744332    234455678888888888743

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.17  E-value=3e-07  Score=77.72  Aligned_cols=106  Identities=14%  Similarity=0.121  Sum_probs=60.7

Q ss_pred             ccCccccE--EEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCccc---CcCCCCCCCcCeEeccccccccccchhhh
Q 039007           33 SDLRRVRT--ILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVL---PREIGNLKHMRYLDLSRYCQIKKLPNSIC  107 (360)
Q Consensus        33 ~~~~~L~~--L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  107 (360)
                      ...+.|..  ++++.|........++....+++.|+.|++++|.++.+   |..+..+++|+.|++++| .+..+. .+.
T Consensus       138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~  215 (267)
T 3rw6_A          138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELD  215 (267)
T ss_dssp             GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGG
T ss_pred             CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhh
Confidence            33344444  44454432222333344446678888888888887643   344567788888888877 343332 233


Q ss_pred             cCC--ccceEeeccccCcCcCCc-------cccccccccEEE
Q 039007          108 ELQ--SLQTLILRGCLKLEELPK-------DIRYLVSLRMFV  140 (360)
Q Consensus       108 ~l~--~L~~L~l~~~~~~~~~p~-------~~~~l~~L~~L~  140 (360)
                      .+.  +|++|++.+|...+.+|.       .+..+++|+.|+
T Consensus       216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            333  788888887766655542       245566666554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.81  E-value=1.9e-05  Score=66.73  Aligned_cols=84  Identities=15%  Similarity=0.137  Sum_probs=63.3

Q ss_pred             ccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC--cCCCCCCCcCeEeccccccccccc-------
Q 039007           33 SDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP--REIGNLKHMRYLDLSRYCQIKKLP-------  103 (360)
Q Consensus        33 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~-------  103 (360)
                      ..+++|++|+|++|.+.... .++..+..+++|+.|++++|.+..+.  ..+..+ +|++|++++|...+.+|       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~-~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLD-DMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCG-GGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCc-cchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence            57899999999999974322 34566789999999999999988552  234444 89999999997655444       


Q ss_pred             hhhhcCCccceEeec
Q 039007          104 NSICELQSLQTLILR  118 (360)
Q Consensus       104 ~~~~~l~~L~~L~l~  118 (360)
                      ..+..+++|+.|+-.
T Consensus       245 ~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          245 AIRERFPKLLRLDGH  259 (267)
T ss_dssp             HHHHHCTTCCEESSC
T ss_pred             HHHHHCcccCeECCc
Confidence            235679999988753

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.70  E-value=0.0018  Score=51.69  Aligned_cols=120  Identities=14%  Similarity=0.075  Sum_probs=78.4

Q ss_pred             chhhhhccCccccEEEEecc-CCCC-cccchHHHhhcCCCccEEEEeCCCCc-----ccCcCCCCCCCcCeEeccccccc
Q 039007           27 DFSSLLSDLRRVRTILFSIN-DENT-SESFFTSCISKSQFLRVLDLDDSTIE-----VLPREIGNLKHMRYLDLSRYCQI   99 (360)
Q Consensus        27 ~~~~~~~~~~~L~~L~l~~~-~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~   99 (360)
                      .+...+..-+.|++|+++++ .++. ....+...+..-+.|+.|++++|.+.     .+...+..-..|++|++++|.+.
T Consensus        32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            45556667788999999875 6541 11235666777888999999999886     33444556678999999988544


Q ss_pred             cccc----hhhhcCCccceEeeccccC--cC-----cCCccccccccccEEEEecccc
Q 039007          100 KKLP----NSICELQSLQTLILRGCLK--LE-----ELPKDIRYLVSLRMFVVTTKQK  146 (360)
Q Consensus       100 ~~~~----~~~~~l~~L~~L~l~~~~~--~~-----~~p~~~~~l~~L~~L~l~~~~~  146 (360)
                      ....    ..+..-+.|++|+++++..  ++     .+...+...+.|+.|+++.+..
T Consensus       112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            3322    3344456799999976422  22     1233455667888888876643

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.37  E-value=0.0013  Score=52.51  Aligned_cols=117  Identities=19%  Similarity=0.133  Sum_probs=76.4

Q ss_pred             ccchHHHhhcCCCccEEEEeCC-CCc-----ccCcCCCCCCCcCeEeccccccccc----cchhhhcCCccceEeecccc
Q 039007           52 ESFFTSCISKSQFLRVLDLDDS-TIE-----VLPREIGNLKHMRYLDLSRYCQIKK----LPNSICELQSLQTLILRGCL  121 (360)
Q Consensus        52 ~~~~~~~~~~l~~L~~L~l~~~-~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~  121 (360)
                      ...+...+.+-+.|++|+++++ .+.     .+...+..-..|+.|++++|...+.    +...+..-+.|+.|+|+.|.
T Consensus        30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~  109 (197)
T 1pgv_A           30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF  109 (197)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence            4456666777788999999885 665     2445566667899999998854432    23344556889999998875


Q ss_pred             CcCc----CCccccccccccEEEEecccc---cc-----ccccCCCCCCCcEeeccCCC
Q 039007          122 KLEE----LPKDIRYLVSLRMFVVTTKQK---SL-----QESGIACLSSLRSLIISHCW  168 (360)
Q Consensus       122 ~~~~----~p~~~~~l~~L~~L~l~~~~~---~~-----~~~~~~~l~~L~~L~l~~~~  168 (360)
                      +...    +.+.+.....|+.|+++++..   ..     +...+..-+.|+.|++..+.
T Consensus       110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            4432    223455566789999875422   21     12344556778888887653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.23  E-value=0.038  Score=40.86  Aligned_cols=36  Identities=11%  Similarity=0.134  Sum_probs=20.6

Q ss_pred             cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCC
Q 039007           37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTI   75 (360)
Q Consensus        37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   75 (360)
                      +|+.|+|++|.+.   ......|..+++|+.|++.+|.+
T Consensus        32 ~l~~L~Ls~N~l~---~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLT---ALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCS---SCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCC---ccChhhhhhccccCEEEecCCCe
Confidence            4666666666652   22334456666666666666654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.72  E-value=0.13  Score=37.86  Aligned_cols=51  Identities=22%  Similarity=0.270  Sum_probs=25.7

Q ss_pred             EEEEeCCCCc--ccCcCCCCCCCcCeEeccccccccccc-hhhhcCCccceEeeccc
Q 039007           67 VLDLDDSTIE--VLPREIGNLKHMRYLDLSRYCQIKKLP-NSICELQSLQTLILRGC  120 (360)
Q Consensus        67 ~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~  120 (360)
                      .++-++++++  .+|..+.  ++|++|++++| .++.++ ..|..+++|+.|+|.+|
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCC
Confidence            4444555554  5554321  34666666655 344443 23445566666666555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	360
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 39/272 (14%), Positives = 83/272 (30%), Gaps = 12/272 (4%)

Query: 65  LRVLDLDDSTIEVLPR-EIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKL 123
             +LDL ++ I  +   +  NLK++  L L      K  P +   L  L+ L L    +L
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QL 91

Query: 124 EELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGL 183
           +ELP+ +   +           K  +   +    +   ++      L+      G   G+
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRK--SVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 184 RSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQ 243
           + L  +              +++    +      L+L+ N   + + +     N    L 
Sbjct: 150 KKLSYIRIAD--------TNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 244 KLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKL 303
             F S                   L    +   P  +A    ++ +      + +     
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 304 SSLPEDIHHLTTLKTLSIKECPALWERCKPLT 335
              P       +   +S+   P  +   +P T
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 293

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 49  NTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICE 108
           N S +   S       L  L++ ++ +  LP     L+    L  S +  + ++P     
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLER---LIAS-FNHLAEVPEL--- 322

Query: 109 LQSLQTLILRGCLKLEELPKDIRYLVSLRM 138
            Q+L+ L +     L E P     +  LRM
Sbjct: 323 PQNLKQLHVEYN-PLREFPDIPESVEDLRM 351

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 8/133 (6%)

Query: 65  LRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLE 124
            R LDL    I V+      L     +D S   +I+KL      L+ L+TL++       
Sbjct: 20  DRELDLRGYKIPVIENLGATLDQFDAIDFS-DNEIRKLDG-FPLLRRLKTLLVNNNRICR 77

Query: 125 ELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLR 184
                 + L  L   ++T          +  L  L SL       +             R
Sbjct: 78  IGEGLDQALPDLTELILTNNSL----VELGDLDPLASLKSLTYLCILRNPVT--NKKHYR 131

Query: 185 SLILVDCPSLISL 197
             ++   P +  L
Sbjct: 132 LYVIYKVPQVRVL 144

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	360
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.9
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.9
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.89
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.86
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.85
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.83
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.82
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.79
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.78
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.77
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.7
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.64
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.59
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.58
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.58
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.55
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.51
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.41
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.39
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.38
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.37
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.35
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.32
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.24
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.2
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.19
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.92
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.82
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.07
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.8
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.69
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.58
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.54
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.03

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.90  E-value=2.1e-23  Score=182.04  Aligned_cols=248  Identities=17%  Similarity=0.144  Sum_probs=153.6

Q ss_pred             cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeC-CCCc-ccCcCCCCCCCcCeEeccccccccccchhhhcCCccce
Q 039007           37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDD-STIE-VLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQT  114 (360)
Q Consensus        37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  114 (360)
                      +++.|+++++.+.. ...+|..+.++++|++|++++ |.+. .+|+.+.++++|++|++++|...+..+..+..+.+|+.
T Consensus        51 ~v~~L~L~~~~l~g-~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPK-PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSS-CEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCC-CCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            57777777776531 123456677777777777775 5565 67777777777888888777555555566677777788


Q ss_pred             EeeccccCcCcCCccccccccccEEEEecccccc-ccccCCCCCCC-cEeeccCCCchhhhHhhhcCCCCccEEEeccCC
Q 039007          115 LILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSL-QESGIACLSSL-RSLIISHCWNLEYLFEHIGQLSGLRSLILVDCP  192 (360)
Q Consensus       115 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L-~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  192 (360)
                      +++..|.....+|..+..+++++.+++++|.+.. +|..+..+..+ +.+.+..|......+..+..+..+ .+++..+.
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~  208 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSE
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            7777776667777777777778878777776653 35556666554 667777765544555555555443 57777766


Q ss_pred             CCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEe
Q 039007          193 SLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLG  272 (360)
Q Consensus       193 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~  272 (360)
                      ....+|..+..+++++.+++.++....                                   .++ .+  ..+++|++|+
T Consensus       209 ~~~~~~~~~~~~~~l~~l~~~~~~l~~-----------------------------------~~~-~~--~~~~~L~~L~  250 (313)
T d1ogqa_         209 LEGDASVLFGSDKNTQKIHLAKNSLAF-----------------------------------DLG-KV--GLSKNLNGLD  250 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECC-----------------------------------BGG-GC--CCCTTCCEEE
T ss_pred             ccccccccccccccccccccccccccc-----------------------------------ccc-cc--cccccccccc
Confidence            666667777777777777777654221                                   111 11  3344555555


Q ss_pred             cccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCCh
Q 039007          273 IEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECP  325 (360)
Q Consensus       273 L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~  325 (360)
                      +++|...+.+|..+.++++|++|+|++|++.+.+|. +.++++|+.+++.+|+
T Consensus       251 Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             CccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence            555543335555555555555555555554444443 2445555555555554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.90  E-value=1.5e-23  Score=182.94  Aligned_cols=253  Identities=17%  Similarity=0.149  Sum_probs=202.9

Q ss_pred             CcceEEEeeecccccc-chhhhhccCccccEEEEec-cCCCCcccchHHHhhcCCCccEEEEeCCCCc-ccCcCCCCCCC
Q 039007           11 KRVRHLSFVSASASRN-DFSSLLSDLRRVRTILFSI-NDENTSESFFTSCISKSQFLRVLDLDDSTIE-VLPREIGNLKH   87 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~   87 (360)
                      .+|+.|++.++++.+. .+++.+.++++|++|++++ |.+   .+.+|..+.++++|++|++++|.+. ..+..+..+.+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l---~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~  126 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL---VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE---ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccc---ccccccccccccccchhhhccccccccccccccchhh
Confidence            4799999999988763 3568899999999999997 555   4456777999999999999999988 45566888999


Q ss_pred             cCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccc-cEEEEeccccccc-cccCCCCCCCcEeecc
Q 039007           88 MRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSL-RMFVVTTKQKSLQ-ESGIACLSSLRSLIIS  165 (360)
Q Consensus        88 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L-~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~  165 (360)
                      |+++++++|.....+|..+.++++|+.+++++|...+.+|..+..+.++ +.+++++|.+... +..+..+. ...+++.
T Consensus       127 L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~  205 (313)
T d1ogqa_         127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS  205 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred             hcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence            9999999998788889899999999999999988888899888888776 7888888887754 44555554 4468888


Q ss_pred             CCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceE
Q 039007          166 HCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKL  245 (360)
Q Consensus       166 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  245 (360)
                      .+......+..+..++.++.++++++.....+ ..++.+++|+.|++++|                              
T Consensus       206 ~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N------------------------------  254 (313)
T d1ogqa_         206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNN------------------------------  254 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSS------------------------------
T ss_pred             cccccccccccccccccccccccccccccccc-cccccccccccccCccC------------------------------
Confidence            87777778888889999999999998654443 34556666666666554                              


Q ss_pred             EecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCC
Q 039007          246 FVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSL  306 (360)
Q Consensus       246 ~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  306 (360)
                           ...+.+|..+  ..+++|++|+|++|...+.+|. +..+++|+.+++++|+.+...
T Consensus       255 -----~l~g~iP~~l--~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         255 -----RIYGTLPQGL--TQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             -----CCEECCCGGG--GGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred             -----eecccCChHH--hCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCC
Confidence                 4444677777  7889999999999965557885 688999999999999866543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.89  E-value=1.3e-21  Score=175.37  Aligned_cols=277  Identities=19%  Similarity=0.178  Sum_probs=169.8

Q ss_pred             CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCe
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRY   90 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~   90 (360)
                      .++++|++.+++++.  + ..+..+++|++|++++|.+..   . + .+.++++|++|++++|.+..++ .+..+++|+.
T Consensus        44 ~~l~~L~l~~~~I~~--l-~gl~~L~nL~~L~Ls~N~l~~---l-~-~l~~L~~L~~L~L~~n~i~~i~-~l~~l~~L~~  114 (384)
T d2omza2          44 DQVTTLQADRLGIKS--I-DGVEYLNNLTQINFSNNQLTD---I-T-PLKNLTKLVDILMNNNQIADIT-PLANLTNLTG  114 (384)
T ss_dssp             TTCCEEECCSSCCCC--C-TTGGGCTTCCEEECCSSCCCC---C-G-GGTTCTTCCEEECCSSCCCCCG-GGTTCTTCCE
T ss_pred             CCCCEEECCCCCCCC--c-cccccCCCCCEEeCcCCcCCC---C-c-cccCCccccccccccccccccc-cccccccccc
Confidence            468888888888765  2 357788899999999888632   2 2 2788889999999998888664 3778888999


Q ss_pred             EeccccccccccchhhhcCCccceEeecccc-----------------------------------------CcCcCCcc
Q 039007           91 LDLSRYCQIKKLPNSICELQSLQTLILRGCL-----------------------------------------KLEELPKD  129 (360)
Q Consensus        91 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-----------------------------------------~~~~~p~~  129 (360)
                      |+++++. ...++. ......+.......+.                                         .....+..
T Consensus       115 L~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (384)
T d2omza2         115 LTLFNNQ-ITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV  192 (384)
T ss_dssp             EECCSSC-CCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred             ccccccc-cccccc-ccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccc
Confidence            9887663 333222 1112222222221110                                         00111233


Q ss_pred             ccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCE
Q 039007          130 IRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSET  209 (360)
Q Consensus       130 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  209 (360)
                      ...+++++.++++++.+...+ ....+++|+.|++.+|.. +.+ ..+..+++|+.|++++|.. ..++ .+..+++|++
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~-~~~~~~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~l~~n~l-~~~~-~~~~~~~L~~  267 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQI-SNLA-PLSGLTKLTE  267 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCG-GGGGCTTCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSSCC-CCCG-GGTTCTTCSE
T ss_pred             cccccccceeeccCCccCCCC-cccccCCCCEEECCCCCC-CCc-chhhcccccchhccccCcc-CCCC-cccccccCCE
Confidence            456678888888888777653 356678899999988743 333 3567788999999988854 3433 3667888999


Q ss_pred             EeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCc
Q 039007          210 LILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDL  289 (360)
Q Consensus       210 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l  289 (360)
                      ++++++......             ....++.++.+.+..+... .++. .  ..+++++.|++++| .+++++. +..+
T Consensus       268 L~l~~~~l~~~~-------------~~~~~~~l~~l~~~~n~l~-~~~~-~--~~~~~l~~L~ls~n-~l~~l~~-l~~l  328 (384)
T d2omza2         268 LKLGANQISNIS-------------PLAGLTALTNLELNENQLE-DISP-I--SNLKNLTYLTLYFN-NISDISP-VSSL  328 (384)
T ss_dssp             EECCSSCCCCCG-------------GGTTCTTCSEEECCSSCCS-CCGG-G--GGCTTCSEEECCSS-CCSCCGG-GGGC
T ss_pred             eeccCcccCCCC-------------ccccccccccccccccccc-cccc-c--chhcccCeEECCCC-CCCCCcc-cccC
Confidence            998876543221             1234445556666555422 2222 2  45566666666665 3343332 5556


Q ss_pred             cccccccccccccccCCCccccCCCccceecccCC
Q 039007          290 EALETLLISACRKLSSLPEDIHHLTTLKTLSIKEC  324 (360)
Q Consensus       290 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c  324 (360)
                      ++|++|++++|++ +.++ .+..+++|++|++++|
T Consensus       329 ~~L~~L~L~~n~l-~~l~-~l~~l~~L~~L~l~~N  361 (384)
T d2omza2         329 TKLQRLFFANNKV-SDVS-SLANLTNINWLSAGHN  361 (384)
T ss_dssp             TTCCEEECCSSCC-CCCG-GGGGCTTCCEEECCSS
T ss_pred             CCCCEEECCCCCC-CCCh-hHcCCCCCCEEECCCC
Confidence            6666666666643 3333 3555666666666665

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=2.7e-20  Score=161.46  Aligned_cols=170  Identities=16%  Similarity=0.086  Sum_probs=79.0

Q ss_pred             cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCccc-CcCCCCCCCcCeEeccccccccccchhhhcCCccceE
Q 039007           37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVL-PREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTL  115 (360)
Q Consensus        37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  115 (360)
                      ++++|++++|.+   ....+..|.++++|++|++++|.+..+ |..+..+++|++|++++| .++.+|..+  ...++.|
T Consensus        32 ~l~~L~Ls~N~i---~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n-~l~~l~~~~--~~~l~~L  105 (305)
T d1xkua_          32 DTALLDLQNNKI---TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKM--PKTLQEL  105 (305)
T ss_dssp             TCCEEECCSSCC---CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSC--CTTCCEE
T ss_pred             CCCEEECcCCcC---CCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC-ccCcCccch--hhhhhhh
Confidence            455555555544   222222345555555555555555433 333555555555555544 333444321  2344455


Q ss_pred             eeccccCcCcCCccccccccccEEEEeccccccc---cccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCC
Q 039007          116 ILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQ---ESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCP  192 (360)
Q Consensus       116 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  192 (360)
                      .+..+......+..+.....++.+....+.....   ...+..+++|+.+++.+|.. ..++..  .+++|+.|++++|.
T Consensus       106 ~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l-~~l~~~--~~~~L~~L~l~~n~  182 (305)
T d1xkua_         106 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQG--LPPSLTELHLDGNK  182 (305)
T ss_dssp             ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSCCSS--CCTTCSEEECTTSC
T ss_pred             hccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCc-cccCcc--cCCccCEEECCCCc
Confidence            5544322221111233334444444443322211   23344555566666655432 222221  24566666666665


Q ss_pred             CCcccCcccCCCCCCCEEeecCC
Q 039007          193 SLISLPSAVKCLSSSETLILIDC  215 (360)
Q Consensus       193 ~~~~~~~~~~~~~~L~~L~l~~~  215 (360)
                      .....+..+..++.+++|+++++
T Consensus       183 ~~~~~~~~~~~~~~l~~L~~s~n  205 (305)
T d1xkua_         183 ITKVDAASLKGLNNLAKLGLSFN  205 (305)
T ss_dssp             CCEECTGGGTTCTTCCEEECCSS
T ss_pred             CCCCChhHhhccccccccccccc
Confidence            55555555666666666666654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.85  E-value=4.7e-20  Score=165.00  Aligned_cols=282  Identities=17%  Similarity=0.200  Sum_probs=197.6

Q ss_pred             hccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCc
Q 039007           32 LSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQS  111 (360)
Q Consensus        32 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  111 (360)
                      .+.+.+|++|+++++.+..    +. .+..+++|++|++++|.++.+++ ++++++|++|++++| .+..++. ++++++
T Consensus        40 ~~~l~~l~~L~l~~~~I~~----l~-gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n-~i~~i~~-l~~l~~  111 (384)
T d2omza2          40 QTDLDQVTTLQADRLGIKS----ID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTN  111 (384)
T ss_dssp             HHHHTTCCEEECCSSCCCC----CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTT
T ss_pred             HHHhCCCCEEECCCCCCCC----cc-ccccCCCCCEEeCcCCcCCCCcc-ccCCccccccccccc-ccccccc-cccccc
Confidence            3466789999999998742    22 37789999999999999998864 899999999999998 4555555 889999


Q ss_pred             cceEeeccccCcCcCCccccccccccEEEEeccccc------------------------------------------cc
Q 039007          112 LQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKS------------------------------------------LQ  149 (360)
Q Consensus       112 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~------------------------------------------~~  149 (360)
                      |+.|++.++...+ ++. ......+.......+.+.                                          ..
T Consensus       112 L~~L~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (384)
T d2omza2         112 LTGLTLFNNQITD-IDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD  189 (384)
T ss_dssp             CCEEECCSSCCCC-CGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred             ccccccccccccc-ccc-ccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence            9999998864332 221 112222222222211100                                          00


Q ss_pred             cccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCC
Q 039007          150 ESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGE  229 (360)
Q Consensus       150 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  229 (360)
                      ......+++++.+++.+|.... ++. ...+++|++|++++|.. +.+ +.+..+++|+.+++.+|......        
T Consensus       190 ~~~~~~l~~~~~l~l~~n~i~~-~~~-~~~~~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~l~~n~l~~~~--------  257 (384)
T d2omza2         190 ISVLAKLTNLESLIATNNQISD-ITP-LGILTNLDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNLA--------  257 (384)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSSCCCCCG--------
T ss_pred             ccccccccccceeeccCCccCC-CCc-ccccCCCCEEECCCCCC-CCc-chhhcccccchhccccCccCCCC--------
Confidence            1234557889999999875433 322 45688999999999854 343 35778899999999998643321        


Q ss_pred             CCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCcc
Q 039007          230 GSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPED  309 (360)
Q Consensus       230 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  309 (360)
                           ....+++|+.|+++++... .++. +  ..++.++.+.+..|. ++.++ .+..+++++.|++++|.+. .++. 
T Consensus       258 -----~~~~~~~L~~L~l~~~~l~-~~~~-~--~~~~~l~~l~~~~n~-l~~~~-~~~~~~~l~~L~ls~n~l~-~l~~-  324 (384)
T d2omza2         258 -----PLSGLTKLTELKLGANQIS-NISP-L--AGLTALTNLELNENQ-LEDIS-PISNLKNLTYLTLYFNNIS-DISP-  324 (384)
T ss_dssp             -----GGTTCTTCSEEECCSSCCC-CCGG-G--TTCTTCSEEECCSSC-CSCCG-GGGGCTTCSEEECCSSCCS-CCGG-
T ss_pred             -----cccccccCCEeeccCcccC-CCCc-c--ccccccccccccccc-ccccc-ccchhcccCeEECCCCCCC-CCcc-
Confidence                 2456779999999988644 4443 3  578899999999884 44443 4788999999999999754 4443 


Q ss_pred             ccCCCccceecccCChhHHhhcCCCCCCCCccccccceeeeccccc
Q 039007          310 IHHLTTLKTLSIKECPALWERCKPLTGEDWSKIARIPRIMLDDEMT  355 (360)
Q Consensus       310 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  355 (360)
                      +..+++|++|++++|+ ++.      ...+..+.+++.+++.++.+
T Consensus       325 l~~l~~L~~L~L~~n~-l~~------l~~l~~l~~L~~L~l~~N~l  363 (384)
T d2omza2         325 VSSLTKLQRLFFANNK-VSD------VSSLANLTNINWLSAGHNQI  363 (384)
T ss_dssp             GGGCTTCCEEECCSSC-CCC------CGGGGGCTTCCEEECCSSCC
T ss_pred             cccCCCCCEEECCCCC-CCC------ChhHcCCCCCCEEECCCCcC
Confidence            7789999999999994 332      11345566777888777654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.83  E-value=7.5e-19  Score=152.23  Aligned_cols=262  Identities=17%  Similarity=0.134  Sum_probs=191.1

Q ss_pred             cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CCCCCCCcCeEeccccccccccchhhhcCCccceE
Q 039007           37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTL  115 (360)
Q Consensus        37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  115 (360)
                      ..+.++.++..+...+..    +  .+.+++|++++|.++.+|+ .+..+++|++|++++|......|..|.++++|+.|
T Consensus        11 ~~~~~~C~~~~L~~lP~~----l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L   84 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKD----L--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL   84 (305)
T ss_dssp             ETTEEECTTSCCCSCCCS----C--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             cCCEEEecCCCCCccCCC----C--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEe
Confidence            567777777665333222    2  2569999999999998876 58899999999999885555456778899999999


Q ss_pred             eeccccCcCcCCccccccccccEEEEecccccccc-ccCCCCCCCcEeeccCCCchh--hhHhhhcCCCCccEEEeccCC
Q 039007          116 ILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQE-SGIACLSSLRSLIISHCWNLE--YLFEHIGQLSGLRSLILVDCP  192 (360)
Q Consensus       116 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~  192 (360)
                      ++++| ....+|..+  ...++.|....+.....+ ..+.....++.++...+....  .....+..+++|+.+++++|.
T Consensus        85 ~l~~n-~l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~  161 (305)
T d1xkua_          85 YLSKN-QLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  161 (305)
T ss_dssp             ECCSS-CCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             cccCC-ccCcCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC
Confidence            99987 455677543  457888888888776653 345566777788877653322  334557778999999998875


Q ss_pred             CCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEe
Q 039007          193 SLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLG  272 (360)
Q Consensus       193 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~  272 (360)
                      . ..++..+  +++|+.|++.++......           ......++.++.|++++|......+.++  ..+++|++|+
T Consensus       162 l-~~l~~~~--~~~L~~L~l~~n~~~~~~-----------~~~~~~~~~l~~L~~s~n~l~~~~~~~~--~~l~~L~~L~  225 (305)
T d1xkua_         162 I-TTIPQGL--PPSLTELHLDGNKITKVD-----------AASLKGLNNLAKLGLSFNSISAVDNGSL--ANTPHLRELH  225 (305)
T ss_dssp             C-CSCCSSC--CTTCSEEECTTSCCCEEC-----------TGGGTTCTTCCEEECCSSCCCEECTTTG--GGSTTCCEEE
T ss_pred             c-cccCccc--CCccCEEECCCCcCCCCC-----------hhHhhccccccccccccccccccccccc--cccccceeee
Confidence            3 4455443  689999999987654332           2234566788999999886554445455  6789999999


Q ss_pred             cccCCCcccccccccCccccccccccccccccCCC-------ccccCCCccceecccCCh
Q 039007          273 IEDCPNFMALQGSLKDLEALETLLISACRKLSSLP-------EDIHHLTTLKTLSIKECP  325 (360)
Q Consensus       273 L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-------~~~~~~~~L~~L~l~~c~  325 (360)
                      |++| .++.+|..+..+++|++|++++|++. .++       ......++|+.|++++||
T Consensus       226 L~~N-~L~~lp~~l~~l~~L~~L~Ls~N~i~-~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         226 LNNN-KLVKVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             CCSS-CCSSCCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             cccc-cccccccccccccCCCEEECCCCccC-ccChhhccCcchhcccCCCCEEECCCCc
Confidence            9998 67788888999999999999998744 332       223446789999999997

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.6e-20  Score=157.73  Aligned_cols=205  Identities=19%  Similarity=0.151  Sum_probs=89.2

Q ss_pred             cCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCC-CCccc-CcCCCC
Q 039007            7 QSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDS-TIEVL-PREIGN   84 (360)
Q Consensus         7 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~   84 (360)
                      ..+|+.++.|+|++|.++. .....|.++++|++|+++++.+   .......+..+..++.+....+ .+..+ +..++.
T Consensus        28 ~~ip~~~~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~ls~n~l---~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~  103 (284)
T d1ozna_          28 VGIPAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVL---ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG  103 (284)
T ss_dssp             TTCCTTCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCC---CEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred             CCCCCCCCEEECcCCcCCC-CCHHHhhccccccccccccccc---cccccccccccccccccccccccccccccchhhcc
Confidence            3444555555555555543 2333455555555555555444   2222233444444444444322 23322 233444


Q ss_pred             CCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccc-cccCCCCCCCcEee
Q 039007           85 LKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQ-ESGIACLSSLRSLI  163 (360)
Q Consensus        85 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~  163 (360)
                      +++|++|++++|......+..+....+|+.+++.+|.+....+..+..+++|+.|++++|.+..+ +..+.++++|+.++
T Consensus       104 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~  183 (284)
T d1ozna_         104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL  183 (284)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             cccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhh
Confidence            55555555554422222223334444555555554422221122344444555555555444433 23344445555555


Q ss_pred             ccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCC
Q 039007          164 ISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDC  215 (360)
Q Consensus       164 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  215 (360)
                      +.+|......|..+..+++|+.|++++|......+..++.+++|++|+++++
T Consensus       184 l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             hhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCC
Confidence            5544433333444444455555555544433333333444444444444443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.1e-18  Score=147.74  Aligned_cols=202  Identities=20%  Similarity=0.204  Sum_probs=92.0

Q ss_pred             cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC-cCCCCCCCcCeEecccccccccc-chhhhcCCccce
Q 039007           37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-REIGNLKHMRYLDLSRYCQIKKL-PNSICELQSLQT  114 (360)
Q Consensus        37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~  114 (360)
                      .+++|++++|.+   ....+..|.+++.|++|+++++.+..++ ..+..+..++.+....+..+..+ +..+.++++|++
T Consensus        33 ~~~~L~Ls~N~i---~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~  109 (284)
T d1ozna_          33 ASQRIFLHGNRI---SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (284)
T ss_dssp             TCSEEECTTSCC---CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCEEECcCCcC---CCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCE
Confidence            345555555554   2222334555555555555555544322 22334444555444333333333 233445555555


Q ss_pred             EeeccccCcCcCCccccccccccEEEEecccccccc-ccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCC
Q 039007          115 LILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQE-SGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPS  193 (360)
Q Consensus       115 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  193 (360)
                      |++++|......+..+....+|+.+++++|.+..++ ..+..+++|+.|++++|......+..+..+++|+.+++++|..
T Consensus       110 L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l  189 (284)
T d1ozna_         110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (284)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccc
Confidence            555554332222223344445555555555444432 2344444444444444432222223334444444444444433


Q ss_pred             CcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEec
Q 039007          194 LISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGI  273 (360)
Q Consensus       194 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L  273 (360)
                      ....|..+..++                                   +|+.|++++|......+..+  ..+++|++|++
T Consensus       190 ~~i~~~~f~~l~-----------------------------------~L~~L~l~~N~i~~~~~~~~--~~~~~L~~L~l  232 (284)
T d1ozna_         190 AHVHPHAFRDLG-----------------------------------RLMTLYLFANNLSALPTEAL--APLRALQYLRL  232 (284)
T ss_dssp             CEECTTTTTTCT-----------------------------------TCCEEECCSSCCSCCCHHHH--TTCTTCCEEEC
T ss_pred             cccChhHhhhhh-----------------------------------hccccccccccccccccccc--ccccccCEEEe
Confidence            333333444444                                   44444555554444444444  66777777777


Q ss_pred             ccCCC
Q 039007          274 EDCPN  278 (360)
Q Consensus       274 ~~~~~  278 (360)
                      ++|..
T Consensus       233 ~~N~l  237 (284)
T d1ozna_         233 NDNPW  237 (284)
T ss_dssp             CSSCE
T ss_pred             cCCCC
Confidence            77643

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.7e-18  Score=146.84  Aligned_cols=194  Identities=18%  Similarity=0.109  Sum_probs=138.9

Q ss_pred             EEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEecc
Q 039007           15 HLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLS   94 (360)
Q Consensus        15 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~   94 (360)
                      +++.++++++.  +++.+.  +++++|++++|.+   ....+..|.++++|++|++++|.++.++ .+..+++|++|+++
T Consensus        14 ~v~C~~~~L~~--iP~~lp--~~l~~L~Ls~N~i---~~l~~~~f~~l~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          14 EVNCDKRNLTA--LPPDLP--KDTTILHLSENLL---YTFSLATLMPYTRLTQLNLDRAELTKLQ-VDGTLPVLGTLDLS   85 (266)
T ss_dssp             EEECTTSCCSS--CCSCCC--TTCCEEECTTSCC---SEEEGGGGTTCTTCCEEECTTSCCCEEE-CCSCCTTCCEEECC
T ss_pred             EEEccCCCCCe--eCcCcC--cCCCEEECcCCcC---CCcCHHHhhccccccccccccccccccc-cccccccccccccc
Confidence            34555555554  333332  4688888888876   3444566788888888888888887665 35678888888888


Q ss_pred             ccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEecccccccc-ccCCCCCCCcEeeccCCCchhhh
Q 039007           95 RYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQE-SGIACLSSLRSLIISHCWNLEYL  173 (360)
Q Consensus        95 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~  173 (360)
                      +| .+...+..+..+++|+.|+++++......+..+..+.+++.|++.+|.+..++ ..+..+++++.+++++|......
T Consensus        86 ~N-~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~  164 (266)
T d1p9ag_          86 HN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (266)
T ss_dssp             SS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             cc-cccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccC
Confidence            77 45555666778888888888876554444455677788888888888776653 45567888888888887554444


Q ss_pred             HhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCc
Q 039007          174 FEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSL  218 (360)
Q Consensus       174 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  218 (360)
                      +..+..+++|++|++++|. ++.+|+.+..+++|+.|++++++..
T Consensus       165 ~~~~~~l~~L~~L~Ls~N~-L~~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         165 AGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccccccccccceeecccCC-CcccChhHCCCCCCCEEEecCCCCC
Confidence            5567788888888888885 4578887888888888888887643

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.1e-18  Score=145.22  Aligned_cols=197  Identities=16%  Similarity=0.080  Sum_probs=117.8

Q ss_pred             ccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC-cCCCCCCCcCeEeccccccccccchhhhcCCccce
Q 039007           36 RRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-REIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQT  114 (360)
Q Consensus        36 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  114 (360)
                      ..+.+++.+++.++..+..++      +.+++|++++|.++.+| ..|..+++|++|++++| .++.++. ++.+++|+.
T Consensus        10 ~~~~~v~C~~~~L~~iP~~lp------~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~-~~~l~~L~~   81 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPPDLP------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV-DGTLPVLGT   81 (266)
T ss_dssp             TTCCEEECTTSCCSSCCSCCC------TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC-CSCCTTCCE
T ss_pred             CCCeEEEccCCCCCeeCcCcC------cCCCEEECcCCcCCCcCHHHhhccccccccccccc-ccccccc-ccccccccc
Confidence            344555666655532221111      35677777777777554 34667777777777766 4555554 456777777


Q ss_pred             EeeccccCcCcCCccccccccccEEEEeccccccc-cccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCC
Q 039007          115 LILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQ-ESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPS  193 (360)
Q Consensus       115 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  193 (360)
                      |++++|. ....+..+..+++|+.|+++++..... +..+..+.+++.|++.+|.....-+..+..+++++.+++++|..
T Consensus        82 L~Ls~N~-l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l  160 (266)
T d1p9ag_          82 LDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (266)
T ss_dssp             EECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             ccccccc-ccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccc
Confidence            7777763 334555666777777777777766544 34455667777777776644333334455667777777777654


Q ss_pred             CcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCC
Q 039007          194 LISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQL  253 (360)
Q Consensus       194 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  253 (360)
                      ....+..+..+++|++|++++|....            .+......++|+.|+|++|+..
T Consensus       161 ~~~~~~~~~~l~~L~~L~Ls~N~L~~------------lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         161 TELPAGLLNGLENLDTLLLQENSLYT------------IPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCCC------------CCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccCccccccccccceeecccCCCcc------------cChhHCCCCCCCEEEecCCCCC
Confidence            44444456667777777777765332            1223344566777777776533

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.3e-17  Score=142.55  Aligned_cols=184  Identities=17%  Similarity=0.166  Sum_probs=89.5

Q ss_pred             cccccEEEEecccccc--ccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcc--cCcccCCCCCCC
Q 039007          133 LVSLRMFVVTTKQKSL--QESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLIS--LPSAVKCLSSSE  208 (360)
Q Consensus       133 l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~  208 (360)
                      ..+|++|+++++.+..  ....+..+++|++|++.+|......+..++.+++|+.|++++|..++.  +......+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            3455555555554432  123345556666666665544444445555556666666665544331  222233455666


Q ss_pred             EEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCcc-CCCCchhhhhcCCCCCCcEEecccCCCcc-cccccc
Q 039007          209 TLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLK-QLLDLPQWLLQGSTKTLQFLGIEDCPNFM-ALQGSL  286 (360)
Q Consensus       209 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~~  286 (360)
                      +|++++|..+......        ......+++|+.|+++++. .+.+.....+...+|+|++|++++|..++ ..+..+
T Consensus       125 ~L~ls~c~~~~~~~~~--------~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l  196 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQ--------VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF  196 (284)
T ss_dssp             EEECCCCTTCCHHHHH--------HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred             ccccccccccccccch--------hhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhh
Confidence            6666665544322100        0001123456666665542 12221111111455666666666665544 344445


Q ss_pred             cCcccccccccccccccc-CCCccccCCCccceecccCC
Q 039007          287 KDLEALETLLISACRKLS-SLPEDIHHLTTLKTLSIKEC  324 (360)
Q Consensus       287 ~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~c  324 (360)
                      .++++|++|++++|..++ .....+.++++|+.|++.+|
T Consensus       197 ~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         197 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            566666666666664443 22333455666666666665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.8e-17  Score=141.71  Aligned_cols=135  Identities=19%  Similarity=0.153  Sum_probs=67.7

Q ss_pred             CCCCcCeEeccccccccc-cchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccc-ccc--ccccCCCCCCC
Q 039007           84 NLKHMRYLDLSRYCQIKK-LPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQ-KSL--QESGIACLSSL  159 (360)
Q Consensus        84 ~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~-~~~--~~~~~~~l~~L  159 (360)
                      ...+|++|++++|..... +...+..+++|++|++.+|...+..+..++.+++|++|+++++. ++.  ....+..+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            445677777776633322 23445567777777777664443344445556666666666542 221  11223345666


Q ss_pred             cEeeccCCCchh--hhHhhhc-CCCCccEEEeccCCC-C--cccCcccCCCCCCCEEeecCCcCc
Q 039007          160 RSLIISHCWNLE--YLFEHIG-QLSGLRSLILVDCPS-L--ISLPSAVKCLSSSETLILIDCKSL  218 (360)
Q Consensus       160 ~~L~l~~~~~~~--~~~~~l~-~l~~L~~L~l~~~~~-~--~~~~~~~~~~~~L~~L~l~~~~~~  218 (360)
                      ++|++++|..++  .+...+. .+++|+.|+++++.. .  ..+......+++|++|++++|..+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~i  188 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML  188 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCC
Confidence            666666654332  1222222 245666666665421 1  122233344566666666655444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=3e-15  Score=123.46  Aligned_cols=202  Identities=20%  Similarity=0.199  Sum_probs=140.0

Q ss_pred             EEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccc
Q 039007           16 LSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSR   95 (360)
Q Consensus        16 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~   95 (360)
                      +.+..+.+.+   ...++++.+|+.|++.+|.+..    +. .+.++++|++|++++|.+..++ .+..+++|+++++++
T Consensus        24 ~~l~~~~~~d---~~~~~~l~~L~~L~l~~~~i~~----l~-~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~   94 (227)
T d1h6ua2          24 IAAGKSNVTD---TVTQADLDGITTLSAFGTGVTT----IE-GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSG   94 (227)
T ss_dssp             HHTTCSSTTS---EECHHHHHTCCEEECTTSCCCC----CT-TGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCS
T ss_pred             HHhCCCCcCC---cCCHHHcCCcCEEECCCCCCCc----ch-hHhcCCCCcEeecCCceeeccc-ccccccccccccccc
Confidence            3444444444   2245677888899998887632    22 2778889999999988887654 378888899998887


Q ss_pred             cccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHh
Q 039007           96 YCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFE  175 (360)
Q Consensus        96 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  175 (360)
                      | ..+.++. +..+++|+.+.++++.... + ..+...+.++.+.++.+..... ..+..+++|+.|++.+|.....  .
T Consensus        95 n-~~~~i~~-l~~l~~L~~l~l~~~~~~~-~-~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~--~  167 (227)
T d1h6ua2          95 N-PLKNVSA-IAGLQSIKTLDLTSTQITD-V-TPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDL--T  167 (227)
T ss_dssp             C-CCSCCGG-GTTCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCCC--G
T ss_pred             c-ccccccc-ccccccccccccccccccc-c-chhccccchhhhhchhhhhchh-hhhccccccccccccccccccc--h
Confidence            7 4455554 7788889999888764332 2 2456677788888877766544 3466788888888888754332  2


Q ss_pred             hhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEec
Q 039007          176 HIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVS  248 (360)
Q Consensus       176 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~  248 (360)
                      .+..+++|++|++++|. ++.++. ++.+++|++|++++|+... .            .....+++|+.|+++
T Consensus       168 ~l~~l~~L~~L~Ls~n~-l~~l~~-l~~l~~L~~L~Ls~N~lt~-i------------~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         168 PLANLSKLTTLKADDNK-ISDISP-LASLPNLIEVHLKNNQISD-V------------SPLANTSNLFIVTLT  225 (227)
T ss_dssp             GGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECTTSCCCB-C------------GGGTTCTTCCEEEEE
T ss_pred             hhcccccceecccCCCc-cCCChh-hcCCCCCCEEECcCCcCCC-C------------cccccCCCCCEEEee
Confidence            36778889999998884 455543 6778889999998885322 1            124567788888876

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=8.4e-16  Score=126.79  Aligned_cols=190  Identities=19%  Similarity=0.205  Sum_probs=144.3

Q ss_pred             hhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccE
Q 039007           59 ISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRM  138 (360)
Q Consensus        59 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~  138 (360)
                      ...+.+|+.|++.+|.++.+ +.+.++++|++|++++| .+..++. +..+++|+.+++++|. ...++ .+..+++|+.
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n-~i~~~~~-l~~l~~l~~l~~~~n~-~~~i~-~l~~l~~L~~  111 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKT  111 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCE
T ss_pred             HHHcCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCc-eeecccc-cccccccccccccccc-ccccc-cccccccccc
Confidence            45567899999999999887 46889999999999988 4555544 7889999999999874 44554 5778999999


Q ss_pred             EEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCc
Q 039007          139 FVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSL  218 (360)
Q Consensus       139 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  218 (360)
                      ++++++..... ..+...+.++.+.+..+.....  ..+..+++|+.|++++|... ..+ .++.+++|+.|++++|...
T Consensus       112 l~l~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         112 LDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVS-DLT-PLANLSKLTTLKADDNKIS  186 (227)
T ss_dssp             EECTTSCCCCC-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCC-CCG-GGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccc-chhccccchhhhhchhhhhchh--hhhccccccccccccccccc-cch-hhcccccceecccCCCccC
Confidence            99988876655 3567788899999887654332  23567889999999988543 222 3678999999999988532


Q ss_pred             cccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEeccc
Q 039007          219 NLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIED  275 (360)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~  275 (360)
                      . .            .....+++|++|++++|+ +++++. +  ..+++|+.|++++
T Consensus       187 ~-l------------~~l~~l~~L~~L~Ls~N~-lt~i~~-l--~~l~~L~~L~lsn  226 (227)
T d1h6ua2         187 D-I------------SPLASLPNLIEVHLKNNQ-ISDVSP-L--ANTSNLFIVTLTN  226 (227)
T ss_dssp             C-C------------GGGGGCTTCCEEECTTSC-CCBCGG-G--TTCTTCCEEEEEE
T ss_pred             C-C------------hhhcCCCCCCEEECcCCc-CCCCcc-c--ccCCCCCEEEeeC
Confidence            2 1            124567899999999985 666764 4  7889999999874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=2.5e-15  Score=122.29  Aligned_cols=167  Identities=19%  Similarity=0.247  Sum_probs=134.5

Q ss_pred             ccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCcc
Q 039007           33 SDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSL  112 (360)
Q Consensus        33 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  112 (360)
                      ..+..|+.|+++++.+...    . .+..+++|++|++++|.++.++ .++.+++|++|++++| .++.++. +..+++|
T Consensus        43 ~~L~~L~~L~l~~~~i~~l----~-~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n-~i~~l~~-l~~l~~L  114 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIKSV----Q-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDEN-KVKDLSS-LKDLKKL  114 (210)
T ss_dssp             HHHHTCCEEECTTSCCCCC----T-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS-CCCCGGG-GTTCTTC
T ss_pred             HHhcCccEEECcCCCCCCc----h-hHhhCCCCCEEeCCCccccCcc-ccccCccccccccccc-ccccccc-ccccccc
Confidence            3567899999999986422    2 2778999999999999998775 4688999999999988 5667764 8889999


Q ss_pred             ceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCC
Q 039007          113 QTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCP  192 (360)
Q Consensus       113 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  192 (360)
                      +.|++.+|.. ..+ ..+..+++++.++++++.+... ..+..+++|+.+++.+|.. +.++ .+..+++|++|++++|.
T Consensus       115 ~~L~l~~~~~-~~~-~~l~~l~~l~~l~~~~n~l~~~-~~~~~l~~L~~l~l~~n~l-~~i~-~l~~l~~L~~L~Ls~N~  189 (210)
T d1h6ta2         115 KSLSLEHNGI-SDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI-SDIV-PLAGLTKLQNLYLSKNH  189 (210)
T ss_dssp             CEEECTTSCC-CCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCC-CCCG-GGTTCTTCCEEECCSSC
T ss_pred             cccccccccc-ccc-cccccccccccccccccccccc-ccccccccccccccccccc-cccc-cccCCCCCCEEECCCCC
Confidence            9999998743 344 3678899999999999988765 4577889999999999854 4443 37889999999999985


Q ss_pred             CCcccCcccCCCCCCCEEeecC
Q 039007          193 SLISLPSAVKCLSSSETLILID  214 (360)
Q Consensus       193 ~~~~~~~~~~~~~~L~~L~l~~  214 (360)
                       ++.++ .+..+++|++|++++
T Consensus       190 -i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         190 -ISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -CCBCG-GGTTCTTCSEEEEEE
T ss_pred             -CCCCh-hhcCCCCCCEEEccC
Confidence             45665 578899999999864

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.63  E-value=2.4e-14  Score=125.58  Aligned_cols=55  Identities=24%  Similarity=0.292  Sum_probs=41.7

Q ss_pred             CCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCCh
Q 039007          263 GSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECP  325 (360)
Q Consensus       263 ~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~  325 (360)
                      ..+++|++|++++| .++.+|.   .+++|+.|++++|++ +.+|..   +++|++|++++|+
T Consensus       281 ~~~~~L~~L~Ls~N-~l~~lp~---~~~~L~~L~L~~N~L-~~l~~~---~~~L~~L~L~~N~  335 (353)
T d1jl5a_         281 DLPPSLEELNVSNN-KLIELPA---LPPRLERLIASFNHL-AEVPEL---PQNLKQLHVEYNP  335 (353)
T ss_dssp             CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCC-SCCCCC---CTTCCEEECCSSC
T ss_pred             ccCCCCCEEECCCC-ccCcccc---ccCCCCEEECCCCcC-Cccccc---cCCCCEEECcCCc
Confidence            45688999999988 4666764   357889999998874 466653   4678999999986

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=3.4e-15  Score=120.38  Aligned_cols=163  Identities=18%  Similarity=0.220  Sum_probs=111.5

Q ss_pred             ccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCcc
Q 039007           33 SDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSL  112 (360)
Q Consensus        33 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  112 (360)
                      ..++++++|+++++.+..    +. .+..+++|++|++++|.++.+++ ++.+++|++|++++| ....++. +..+++|
T Consensus        37 ~~l~~l~~L~l~~~~i~~----l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n-~~~~~~~-l~~l~~L  108 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKS----ID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNL  108 (199)
T ss_dssp             HHHTTCCEEECTTSCCCC----CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTC
T ss_pred             HHhcCCCEEECCCCCCCC----cc-ccccCCCcCcCccccccccCccc-ccCCccccccccccc-ccccccc-ccccccc
Confidence            456778888888877632    21 26678888888888888776653 778888888888876 3445554 6778888


Q ss_pred             ceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCC
Q 039007          113 QTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCP  192 (360)
Q Consensus       113 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  192 (360)
                      +.|++++|... .+ ..+..+++|+.|++++|.+..+ ..+..+++|+.|++.+|.. +.++ .++.+++|++|++++|+
T Consensus       109 ~~L~l~~~~~~-~~-~~~~~l~~L~~L~l~~n~l~~~-~~l~~~~~L~~L~l~~n~l-~~l~-~l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         109 TGLTLFNNQIT-DI-DPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNFSSNQV-TDLK-PLANLTTLERLDISSNK  183 (199)
T ss_dssp             SEEECCSSCCC-CC-GGGTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCC-CCCG-GGTTCTTCCEEECCSSC
T ss_pred             ccccccccccc-cc-cccchhhhhHHhhhhhhhhccc-ccccccccccccccccccc-cCCc-cccCCCCCCEEECCCCC
Confidence            88888776433 22 3466778888888888777655 3567778888888887643 3333 36777888888888874


Q ss_pred             CCcccCcccCCCCCCCEE
Q 039007          193 SLISLPSAVKCLSSSETL  210 (360)
Q Consensus       193 ~~~~~~~~~~~~~~L~~L  210 (360)
                       ++.++ .++.+++|++|
T Consensus       184 -i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         184 -VSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             -CCCCG-GGGGCTTCSEE
T ss_pred             -CCCCc-cccCCCCCCcC
Confidence             44443 35667777664

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=3.3e-15  Score=121.51  Aligned_cols=166  Identities=17%  Similarity=0.195  Sum_probs=121.5

Q ss_pred             cCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEE
Q 039007           61 KSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFV  140 (360)
Q Consensus        61 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~  140 (360)
                      .+..|++|+++++.++.++ .+..+++|++|++++| .++.++. ++.+++|+.|++++|. +..+| .+..+++|+.|+
T Consensus        44 ~L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n-~i~~l~~-~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEE
T ss_pred             HhcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCc-cccCccc-cccCcccccccccccc-ccccc-cccccccccccc
Confidence            3456888899888887664 4778889999999887 5566664 6788899999998874 44555 477888899999


Q ss_pred             EeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccc
Q 039007          141 VTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNL  220 (360)
Q Consensus       141 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  220 (360)
                      ++++..... ..+..++.++.+++.+|.... . ..+..+++|+++++++|.. ..+++ +..+++|+.|++++|.... 
T Consensus       119 l~~~~~~~~-~~l~~l~~l~~l~~~~n~l~~-~-~~~~~l~~L~~l~l~~n~l-~~i~~-l~~l~~L~~L~Ls~N~i~~-  192 (210)
T d1h6ta2         119 LEHNGISDI-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQI-SDIVP-LAGLTKLQNLYLSKNHISD-  192 (210)
T ss_dssp             CTTSCCCCC-GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCCCB-
T ss_pred             ccccccccc-ccccccccccccccccccccc-c-ccccccccccccccccccc-ccccc-ccCCCCCCEEECCCCCCCC-
Confidence            888877655 457778888999888875432 2 2456788899999988854 34443 6788899999998875322 


Q ss_pred             cccccccCCCCCCCCCCCCCccceEEecC
Q 039007          221 NLNIEMEGEGSHHDRDNTRTHLQKLFVSG  249 (360)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  249 (360)
                                  ......+++|+.|+|++
T Consensus       193 ------------l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 ------------LRALAGLKNLDVLELFS  209 (210)
T ss_dssp             ------------CGGGTTCTTCSEEEEEE
T ss_pred             ------------ChhhcCCCCCCEEEccC
Confidence                        11245677888888864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=5.9e-15  Score=118.98  Aligned_cols=160  Identities=20%  Similarity=0.217  Sum_probs=130.3

Q ss_pred             CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCe
Q 039007           11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRY   90 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~   90 (360)
                      ++++.|++.++.+..   ...++.+++|++|++++|.+.   ...+  +.++++|++|++++|.+..++ .+..+++|++
T Consensus        40 ~~l~~L~l~~~~i~~---l~~l~~l~nL~~L~Ls~N~l~---~~~~--l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~  110 (199)
T d2omxa2          40 DQVTTLQADRLGIKS---IDGVEYLNNLTQINFSNNQLT---DITP--LKNLTKLVDILMNNNQIADIT-PLANLTNLTG  110 (199)
T ss_dssp             TTCCEEECTTSCCCC---CTTGGGCTTCCEEECCSSCCC---CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred             cCCCEEECCCCCCCC---ccccccCCCcCcCcccccccc---Cccc--ccCCccccccccccccccccc-cccccccccc
Confidence            578999999998876   245889999999999999873   2222  889999999999999988765 4889999999


Q ss_pred             EeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCch
Q 039007           91 LDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNL  170 (360)
Q Consensus        91 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  170 (360)
                      |+++++. ....+ .+..+++|+.|++++|. ...++ .+..+++|+.|++.+|.+...+ .++++++|+.|++++|. +
T Consensus       111 L~l~~~~-~~~~~-~~~~l~~L~~L~l~~n~-l~~~~-~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~-i  184 (199)
T d2omxa2         111 LTLFNNQ-ITDID-PLKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNK-V  184 (199)
T ss_dssp             EECCSSC-CCCCG-GGTTCTTCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-C
T ss_pred             ccccccc-ccccc-ccchhhhhHHhhhhhhh-hcccc-cccccccccccccccccccCCc-cccCCCCCCEEECCCCC-C
Confidence            9999874 34443 37889999999999975 44444 5888999999999999888764 58899999999999985 5


Q ss_pred             hhhHhhhcCCCCccEE
Q 039007          171 EYLFEHIGQLSGLRSL  186 (360)
Q Consensus       171 ~~~~~~l~~l~~L~~L  186 (360)
                      +.++ .++.+++|++|
T Consensus       185 ~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         185 SDIS-VLAKLTNLESL  199 (199)
T ss_dssp             CCCG-GGGGCTTCSEE
T ss_pred             CCCc-cccCCCCCCcC
Confidence            5554 47788999876

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.2e-16  Score=145.61  Aligned_cols=310  Identities=16%  Similarity=0.140  Sum_probs=192.6

Q ss_pred             CCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCC-cccchHHHhhcCCCccEEEEeCCCCc-----ccCcCCC
Q 039007           10 PKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENT-SESFFTSCISKSQFLRVLDLDDSTIE-----VLPREIG   83 (360)
Q Consensus        10 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~   83 (360)
                      +.+++.|++.++.+++..+...++.++++++|++++|.++. ....+...+..+++|++|++++|.++     .+...+.
T Consensus         1 ~~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           1 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            35789999999999998888899999999999999998641 11345566789999999999999885     2333333


Q ss_pred             -CCCCcCeEeccccccccc----cchhhhcCCccceEeeccccCcCc----C------------------C---------
Q 039007           84 -NLKHMRYLDLSRYCQIKK----LPNSICELQSLQTLILRGCLKLEE----L------------------P---------  127 (360)
Q Consensus        84 -~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~------------------p---------  127 (360)
                       ...+|++|++++|...+.    ++..+..+++|++|++++|.....    +                  +         
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  160 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcc
Confidence             235799999999853322    345567789999999988743210    0                  0         


Q ss_pred             --ccccccccccEEEEeccccccc----------------------------------cccCCCCCCCcEeeccCCCchh
Q 039007          128 --KDIRYLVSLRMFVVTTKQKSLQ----------------------------------ESGIACLSSLRSLIISHCWNLE  171 (360)
Q Consensus       128 --~~~~~l~~L~~L~l~~~~~~~~----------------------------------~~~~~~l~~L~~L~l~~~~~~~  171 (360)
                        ..+.....++.+.++.+.....                                  ...+...+.++.+++..+....
T Consensus       161 ~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~  240 (460)
T d1z7xw1         161 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  240 (460)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccc
Confidence              0011223455555544321100                                  0112335678889988875433


Q ss_pred             -----hhHhhhcCCCCccEEEeccCCCCcc----cCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCcc
Q 039007          172 -----YLFEHIGQLSGLRSLILVDCPSLIS----LPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHL  242 (360)
Q Consensus       172 -----~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  242 (360)
                           ...........++.+++++|.....    ....+...+.++.++++++....... ..+.     .........|
T Consensus       241 ~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~-~~l~-----~~l~~~~~~L  314 (460)
T d1z7xw1         241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA-RLLC-----ETLLEPGCQL  314 (460)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH-HHHH-----HHHTSTTCCC
T ss_pred             cccchhhccccccccccccccccccccccccccccccccccccccccccccccccccccc-chhh-----cccccccccc
Confidence                 2234445678899999998865432    23334557788888888765321111 0000     0011223467


Q ss_pred             ceEEecCccCCCCchhhh--hcCCCCCCcEEecccCCCcc----cccccc-cCccccccccccccccccC----CCcccc
Q 039007          243 QKLFVSGLKQLLDLPQWL--LQGSTKTLQFLGIEDCPNFM----ALQGSL-KDLEALETLLISACRKLSS----LPEDIH  311 (360)
Q Consensus       243 ~~L~L~~~~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~----~~~~~~-~~l~~L~~L~l~~~~~~~~----~~~~~~  311 (360)
                      +.++++++.........+  .....++|++|+|++|....    .++..+ ...+.|++|++++|.+...    ++..+.
T Consensus       315 ~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~  394 (460)
T d1z7xw1         315 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL  394 (460)
T ss_dssp             CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred             ccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHh
Confidence            888888776443322211  01355678888888874322    233333 2456788888888875432    445566


Q ss_pred             CCCccceecccCCh
Q 039007          312 HLTTLKTLSIKECP  325 (360)
Q Consensus       312 ~~~~L~~L~l~~c~  325 (360)
                      .+++|++|++++|+
T Consensus       395 ~~~~L~~L~Ls~N~  408 (460)
T d1z7xw1         395 ANHSLRELDLSNNC  408 (460)
T ss_dssp             HCCCCCEEECCSSS
T ss_pred             cCCCCCEEECCCCc
Confidence            67888888888884

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1e-14  Score=121.36  Aligned_cols=175  Identities=15%  Similarity=0.155  Sum_probs=85.6

Q ss_pred             cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCc-ccC-cCCCCCCCcCeEecccccccccc-chhhhcCCccc
Q 039007           37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIE-VLP-REIGNLKHMRYLDLSRYCQIKKL-PNSICELQSLQ  113 (360)
Q Consensus        37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~  113 (360)
                      ++++|++++|.+   ....+..|.++++|++|++++|.+. .++ ..+..++.++++.+..+..+... +..+.++++|+
T Consensus        30 ~l~~L~Ls~n~i---~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~  106 (242)
T d1xwdc1          30 NAIELRFVLTKL---RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ  106 (242)
T ss_dssp             CCSEEEEESCCC---CEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCC
T ss_pred             CCCEEECcCCcC---CccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccc
Confidence            566666666665   2223334566666666666666654 232 23555666666665543333332 34455666666


Q ss_pred             eEeeccccCcCcCCc--cccccccccEEEEeccccccc-cccCCCC-CCCcEeeccCCCchhhhHhhhcCCCCccEEEec
Q 039007          114 TLILRGCLKLEELPK--DIRYLVSLRMFVVTTKQKSLQ-ESGIACL-SSLRSLIISHCWNLEYLFEHIGQLSGLRSLILV  189 (360)
Q Consensus       114 ~L~l~~~~~~~~~p~--~~~~l~~L~~L~l~~~~~~~~-~~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  189 (360)
                      .+++.++... ..+.  .+..+..+..+....+.+..+ ...+..+ ..++.+++.+|. ++.++......++++.+...
T Consensus       107 ~l~l~~~~l~-~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~-l~~i~~~~~~~~~l~~~~~l  184 (242)
T d1xwdc1         107 YLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNCAFNGTQLDELNLS  184 (242)
T ss_dssp             EEEEESCCCC-SCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTTTTTCCEEEEECT
T ss_pred             ccccchhhhc-ccccccccccccccccccccccccccccccccccccccceeeeccccc-ccccccccccchhhhccccc
Confidence            6666665332 2221  122233333333333333332 2233333 355666665542 23333333344555555443


Q ss_pred             cCCCCcccCc-ccCCCCCCCEEeecCCc
Q 039007          190 DCPSLISLPS-AVKCLSSSETLILIDCK  216 (360)
Q Consensus       190 ~~~~~~~~~~-~~~~~~~L~~L~l~~~~  216 (360)
                      .+..++.++. .+.++++|++|++++++
T Consensus       185 ~~n~l~~l~~~~f~~l~~L~~L~Ls~N~  212 (242)
T d1xwdc1         185 DNNNLEELPNDVFHGASGPVILDISRTR  212 (242)
T ss_dssp             TCTTCCCCCTTTTTTSCCCSEEECTTSC
T ss_pred             cccccccccHHHhcCCCCCCEEECCCCc
Confidence            4334445543 35566677777776654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.58  E-value=1.5e-13  Score=120.41  Aligned_cols=69  Identities=22%  Similarity=0.257  Sum_probs=38.9

Q ss_pred             CCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccce
Q 039007          239 RTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKT  318 (360)
Q Consensus       239 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  318 (360)
                      +++|++|++++|. +..+|.     .+++|++|++++| .++.+|..   +++|++|++++|+ ++.+|...   .+|+.
T Consensus       283 ~~~L~~L~Ls~N~-l~~lp~-----~~~~L~~L~L~~N-~L~~l~~~---~~~L~~L~L~~N~-L~~lp~~~---~~L~~  348 (353)
T d1jl5a_         283 PPSLEELNVSNNK-LIELPA-----LPPRLERLIASFN-HLAEVPEL---PQNLKQLHVEYNP-LREFPDIP---ESVED  348 (353)
T ss_dssp             CTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC-CSSCCCCC---TTCCE
T ss_pred             CCCCCEEECCCCc-cCcccc-----ccCCCCEEECCCC-cCCccccc---cCCCCEEECcCCc-CCCCCccc---cccCe
Confidence            3467777777664 334442     3466777777766 34555542   3467777777776 44555432   34555


Q ss_pred             ecc
Q 039007          319 LSI  321 (360)
Q Consensus       319 L~l  321 (360)
                      |.+
T Consensus       349 L~~  351 (353)
T d1jl5a_         349 LRM  351 (353)
T ss_dssp             EEC
T ss_pred             eEC
Confidence            544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.4e-13  Score=114.28  Aligned_cols=85  Identities=11%  Similarity=0.194  Sum_probs=46.4

Q ss_pred             CccEEEEeCCCCcccCc-CCCCCCCcCeEeccccccccccc-hhhhcCCccceEeeccccCc-CcCCccccccccccEEE
Q 039007           64 FLRVLDLDDSTIEVLPR-EIGNLKHMRYLDLSRYCQIKKLP-NSICELQSLQTLILRGCLKL-EELPKDIRYLVSLRMFV  140 (360)
Q Consensus        64 ~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~-~~~p~~~~~l~~L~~L~  140 (360)
                      ++++|++++|.++.+|. .|.++++|++|++++|...+.++ ..+..+++++++.+..+... ...+..+..+++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            46666666666665554 35666666666666654444332 23455666666665443222 22334455666666666


Q ss_pred             Eecccccc
Q 039007          141 VTTKQKSL  148 (360)
Q Consensus       141 l~~~~~~~  148 (360)
                      +.++.+..
T Consensus       110 l~~~~l~~  117 (242)
T d1xwdc1         110 ISNTGIKH  117 (242)
T ss_dssp             EESCCCCS
T ss_pred             cchhhhcc
Confidence            66655443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=6.6e-16  Score=140.63  Aligned_cols=310  Identities=15%  Similarity=0.120  Sum_probs=192.8

Q ss_pred             ccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCc-----ccCcCCCCCCCcCeEeccccccccc----cchhh
Q 039007           36 RRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIE-----VLPREIGNLKHMRYLDLSRYCQIKK----LPNSI  106 (360)
Q Consensus        36 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~  106 (360)
                      ++|++|+++++.++  +..+...+..+++++.|++++|.++     .++..+..+++|++|++++|.....    +...+
T Consensus         2 ~~l~~ld~~~~~i~--~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDIQCEELS--DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEEESCCCC--HHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCCEEEeeCCcCC--hHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            47899999999875  5566777888999999999999987     3455678899999999998843221    11222


Q ss_pred             h-cCCccceEeeccccCcCc----CCccccccccccEEEEecccccccc-----c-------------------------
Q 039007          107 C-ELQSLQTLILRGCLKLEE----LPKDIRYLVSLRMFVVTTKQKSLQE-----S-------------------------  151 (360)
Q Consensus       107 ~-~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~~~~-----~-------------------------  151 (360)
                      . ...+|+.|++++|...+.    ++..+..+++|++|++++|.+....     .                         
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  159 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  159 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhc
Confidence            2 235899999999865432    3445678899999999988654210     0                         


Q ss_pred             ----cCCCCCCCcEeeccCCCchh---------------------------------hhHhhhcCCCCccEEEeccCCCC
Q 039007          152 ----GIACLSSLRSLIISHCWNLE---------------------------------YLFEHIGQLSGLRSLILVDCPSL  194 (360)
Q Consensus       152 ----~~~~l~~L~~L~l~~~~~~~---------------------------------~~~~~l~~l~~L~~L~l~~~~~~  194 (360)
                          .+.....++.+.+..+....                                 .....+...+.++.+.+.++...
T Consensus       160 ~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~  239 (460)
T d1z7xw1         160 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  239 (460)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccc
Confidence                00112345555555433211                                 11223445678888888877543


Q ss_pred             c-----ccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhh---hcCCCC
Q 039007          195 I-----SLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWL---LQGSTK  266 (360)
Q Consensus       195 ~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~---~~~~~~  266 (360)
                      .     .+.........++.+++++|.........       ........+.++.+++++|.........+   .....+
T Consensus       240 ~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~-------~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~  312 (460)
T d1z7xw1         240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGD-------LCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGC  312 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH-------HHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTC
T ss_pred             ccccchhhccccccccccccccccccccccccccc-------ccccccccccccccccccccccccccchhhcccccccc
Confidence            2     22333455788999999988654322110       01112345578899999876432211111   113557


Q ss_pred             CCcEEecccCCCccc----ccccccCccccccccccccccccC----CCcccc-CCCccceecccCChhHHhhcCCCCCC
Q 039007          267 TLQFLGIEDCPNFMA----LQGSLKDLEALETLLISACRKLSS----LPEDIH-HLTTLKTLSIKECPALWERCKPLTGE  337 (360)
Q Consensus       267 ~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~-~~~~L~~L~l~~c~~~~~~~~~~~~~  337 (360)
                      .|+.+++++|.....    +...+...++|++|+|++|++..+    ++..+. ..+.|++|++++|. ++.........
T Consensus       313 ~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~~~~~l~~  391 (460)
T d1z7xw1         313 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAA  391 (460)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHH
T ss_pred             ccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCC-CChHHHHHHHH
Confidence            899999999865443    233445677999999999986542    333343 46789999999994 33221111112


Q ss_pred             CCccccccceeeeccccc
Q 039007          338 DWSKIARIPRIMLDDEMT  355 (360)
Q Consensus       338 ~~~~~~~l~~~~~~~~~~  355 (360)
                      .+.....++.+++.++.+
T Consensus       392 ~l~~~~~L~~L~Ls~N~i  409 (460)
T d1z7xw1         392 TLLANHSLRELDLSNNCL  409 (460)
T ss_dssp             HHHHCCCCCEEECCSSSC
T ss_pred             HHhcCCCCCEEECCCCcC
Confidence            223335577777776654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.41  E-value=2.1e-13  Score=109.07  Aligned_cols=111  Identities=20%  Similarity=0.258  Sum_probs=60.3

Q ss_pred             ccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CCCC
Q 039007            6 CQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EIGN   84 (360)
Q Consensus         6 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~   84 (360)
                      +..+|++++.|+|++|.++.......|.++++|+.|++++|.+   ....+..|..++.|++|++++|.+..+|+ .|.+
T Consensus        24 P~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i---~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~  100 (192)
T d1w8aa_          24 PRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL---TGIEPNAFEGASHIQELQLGENKIKEISNKMFLG  100 (192)
T ss_dssp             CSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCC---CCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTT
T ss_pred             CCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeecccccc---ccccccccccccccceeeeccccccccCHHHHhC
Confidence            3445556666666666654423344555666666666666554   23334445556666666666666554433 3555


Q ss_pred             CCCcCeEecccccccccc-chhhhcCCccceEeeccc
Q 039007           85 LKHMRYLDLSRYCQIKKL-PNSICELQSLQTLILRGC  120 (360)
Q Consensus        85 l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~  120 (360)
                      +++|++|++++| .++.+ +..|..+++|++|++++|
T Consensus       101 l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_         101 LHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTC
T ss_pred             CCcccccccCCc-cccccCHHHhcCCccccccccccc
Confidence            666666666655 33333 233455566666666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.6e-13  Score=105.03  Aligned_cols=126  Identities=17%  Similarity=0.139  Sum_probs=79.2

Q ss_pred             hhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccch-hhhcC
Q 039007           31 LLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPN-SICEL  109 (360)
Q Consensus        31 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l  109 (360)
                      .+.++..+|+|++++|.+...    +..+..+++|+.|++++|.++.++ .+..+++|++|++++| .+..++. .+..+
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i----~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N-~i~~l~~~~~~~l   86 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVI----ENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNN-RICRIGEGLDQAL   86 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSC----CCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSS-CCCEECSCHHHHC
T ss_pred             hccCcCcCcEEECCCCCCCcc----CccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccc-cccCCCccccccc
Confidence            355666778888888776322    334566777888888888777663 4677778888888877 3455543 34567


Q ss_pred             CccceEeeccccCcCcCC--ccccccccccEEEEeccccccccc----cCCCCCCCcEee
Q 039007          110 QSLQTLILRGCLKLEELP--KDIRYLVSLRMFVVTTKQKSLQES----GIACLSSLRSLI  163 (360)
Q Consensus       110 ~~L~~L~l~~~~~~~~~p--~~~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~L~~L~  163 (360)
                      ++|+.|++++|.+ ..++  ..+..+++|++|++++|.+...+.    .+..+++|+.|+
T Consensus        87 ~~L~~L~L~~N~i-~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          87 PDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             TTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccceeccccc-cccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            7788888877643 3333  235566677777777666544321    244455555555

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.2e-13  Score=105.41  Aligned_cols=128  Identities=23%  Similarity=0.210  Sum_probs=97.6

Q ss_pred             hhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCcc-cccccccc
Q 039007           59 ISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKD-IRYLVSLR  137 (360)
Q Consensus        59 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~  137 (360)
                      +.++..+++|++++|+++.++..+..+++|+.|++++| .+..++. +..+++|+.|++++|. +..+|.. +..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N-~i~~l~~-~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKLDG-FPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEECC-CCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCC-CCCccCC-cccCcchhhhhccccc-ccCCCccccccccccc
Confidence            55677889999999999988766677889999999988 5566644 7889999999999875 4445544 46789999


Q ss_pred             EEEEecccccccc--ccCCCCCCCcEeeccCCCchh---hhHhhhcCCCCccEEEec
Q 039007          138 MFVVTTKQKSLQE--SGIACLSSLRSLIISHCWNLE---YLFEHIGQLSGLRSLILV  189 (360)
Q Consensus       138 ~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~---~~~~~l~~l~~L~~L~l~  189 (360)
                      .|++++|.+...+  ..+..+++|++|++.+|....   .-+..+..+++|+.|+-.
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence            9999999887653  457788999999999884422   112356778899988643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=6.4e-13  Score=97.83  Aligned_cols=85  Identities=18%  Similarity=0.304  Sum_probs=41.5

Q ss_pred             hhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCC--ccccccccc
Q 039007           59 ISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELP--KDIRYLVSL  136 (360)
Q Consensus        59 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p--~~~~~l~~L  136 (360)
                      +.++++|++|++++|.++.+|+.++.+++|++|++++| .++.+|. +..+++|+.|++++|. +..+|  ..++.+++|
T Consensus        16 l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N-~i~~l~~-~~~l~~L~~L~l~~N~-i~~~~~~~~l~~~~~L   92 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVDG-VANLPRLQELLLCNNR-LQQSAAIQPLVSCPRL   92 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTC
T ss_pred             cccCCCCCEEECCCCccCcchhhhhhhhcccccccccc-cccccCc-cccccccCeEECCCCc-cCCCCCchhhcCCCCC
Confidence            44455555555555555555555555555555555554 3334433 4555555555555542 22222  234444555


Q ss_pred             cEEEEecccc
Q 039007          137 RMFVVTTKQK  146 (360)
Q Consensus       137 ~~L~l~~~~~  146 (360)
                      +.|++++|.+
T Consensus        93 ~~L~l~~N~i  102 (124)
T d1dcea3          93 VLLNLQGNSL  102 (124)
T ss_dssp             CEEECTTSGG
T ss_pred             CEEECCCCcC
Confidence            5555555444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=9.8e-13  Score=96.82  Aligned_cols=99  Identities=22%  Similarity=0.306  Sum_probs=75.5

Q ss_pred             cEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccc
Q 039007           66 RVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQ  145 (360)
Q Consensus        66 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~  145 (360)
                      |+|++++|.++.++ .+..+++|++|++++| .++.+|..++.+++|+.|++++| .+..+| .++.+++|++|++++|.
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCC-ccCcchhhhhhhhcccccccccc-cccccC-ccccccccCeEECCCCc
Confidence            57888888888775 4788888888988887 56778777888888888888886 444555 47788888888888888


Q ss_pred             ccccc--ccCCCCCCCcEeeccCCC
Q 039007          146 KSLQE--SGIACLSSLRSLIISHCW  168 (360)
Q Consensus       146 ~~~~~--~~~~~l~~L~~L~l~~~~  168 (360)
                      +...+  ..+..+++|+.|++++|.
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCc
Confidence            76553  356677777777777764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.35  E-value=1.8e-13  Score=119.86  Aligned_cols=94  Identities=16%  Similarity=0.154  Sum_probs=55.4

Q ss_pred             hhhhhccCccccEEEEeccCCC-CcccchHHHhhcCCCccEEEEeCCCCcc-----------cCcCCCCCCCcCeEeccc
Q 039007           28 FSSLLSDLRRVRTILFSINDEN-TSESFFTSCISKSQFLRVLDLDDSTIEV-----------LPREIGNLKHMRYLDLSR   95 (360)
Q Consensus        28 ~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----------~~~~~~~l~~L~~L~l~~   95 (360)
                      +...+.....|+.|++++|.++ .....+...+..++.|+.++++++....           +...+..+++|+.|++++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            3455677788888888887653 1112344456667788888887665331           122345566777777776


Q ss_pred             cccccc----cchhhhcCCccceEeecccc
Q 039007           96 YCQIKK----LPNSICELQSLQTLILRGCL  121 (360)
Q Consensus        96 ~~~~~~----~~~~~~~l~~L~~L~l~~~~  121 (360)
                      |.....    +...+..+++|++|++++|.
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~  132 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  132 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             cccccccccchhhhhcccccchheeccccc
Confidence            633222    22334456677777776653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.32  E-value=4.2e-12  Score=101.28  Aligned_cols=124  Identities=16%  Similarity=0.079  Sum_probs=72.5

Q ss_pred             cEEEEeCCCCcccCcCCCCCCCcCeEecccccccccc-chhhhcCCccceEeeccccCcCcCCccccccccccEEEEecc
Q 039007           66 RVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKL-PNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTK  144 (360)
Q Consensus        66 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~  144 (360)
                      +.++.++++++++|..+.  +++++|++++|.....+ +..|..+++|+.|++++|......+..+..+++|+.|++++|
T Consensus        11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            455666666667766553  56777777776443333 344566777777777766555555555666677777777777


Q ss_pred             cccccc-ccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccC
Q 039007          145 QKSLQE-SGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDC  191 (360)
Q Consensus       145 ~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  191 (360)
                      .+..++ ..|.++++|++|++++|.....-+..+..+++|++|++++|
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccc
Confidence            666553 34556666666666665333222333444555555555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.24  E-value=2.8e-12  Score=112.15  Aligned_cols=183  Identities=15%  Similarity=0.093  Sum_probs=115.5

Q ss_pred             CcceEEEeeecccccc---chhhhhccCccccEEEEeccCCCCccc-------chHHHhhcCCCccEEEEeCCCCcc---
Q 039007           11 KRVRHLSFVSASASRN---DFSSLLSDLRRVRTILFSINDENTSES-------FFTSCISKSQFLRVLDLDDSTIEV---   77 (360)
Q Consensus        11 ~~l~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~-------~~~~~~~~l~~L~~L~l~~~~~~~---   77 (360)
                      ..++.|+|.+|.++..   .+...+...++|+.|+++++.......       .+...+..+++|++|++++|.+..   
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  110 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  110 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence            5688999999887663   344567788999999999876432221       244556778999999999998762   


Q ss_pred             --cCcCCCCCCCcCeEeccccccccccchhh-------------hcCCccceEeeccccCcCc----CCccccccccccE
Q 039007           78 --LPREIGNLKHMRYLDLSRYCQIKKLPNSI-------------CELQSLQTLILRGCLKLEE----LPKDIRYLVSLRM  138 (360)
Q Consensus        78 --~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-------------~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~  138 (360)
                        +...+..+++|+.|++++|.........+             ...+.|+.+.++++.....    +...+...+.|+.
T Consensus       111 ~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~  190 (344)
T d2ca6a1         111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  190 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             cchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcc
Confidence              34455678899999999884322111111             2356777777776543321    2223445567777


Q ss_pred             EEEeccccccc------cccCCCCCCCcEeeccCCCchh----hhHhhhcCCCCccEEEeccCCC
Q 039007          139 FVVTTKQKSLQ------ESGIACLSSLRSLIISHCWNLE----YLFEHIGQLSGLRSLILVDCPS  193 (360)
Q Consensus       139 L~l~~~~~~~~------~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~  193 (360)
                      |++++|.+...      ...+..+++|+.|++++|....    .+...+..+++|++|++++|..
T Consensus       191 L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i  255 (344)
T d2ca6a1         191 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL  255 (344)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             cccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCcc
Confidence            77777665431      1334556667777776664322    2344555666677777766643

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.20  E-value=7.1e-13  Score=106.16  Aligned_cols=110  Identities=23%  Similarity=0.326  Sum_probs=65.1

Q ss_pred             hHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccc
Q 039007           55 FTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLV  134 (360)
Q Consensus        55 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~  134 (360)
                      ++..+..+++|++|++++|.++.++ .+..+++|++|++++| .++.++.....+++|+.|++++|. +..+ ..+..++
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~N~-i~~l-~~~~~l~  115 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQ-IASL-SGIEKLV  115 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECSEEE-CCCH-HHHHHHH
T ss_pred             hhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccc-cccccccccccccccccccccccc-cccc-ccccccc
Confidence            3445666666777777766666553 4666666777777666 445555444445566777776653 3333 2355666


Q ss_pred             cccEEEEecccccccc--ccCCCCCCCcEeeccCCC
Q 039007          135 SLRMFVVTTKQKSLQE--SGIACLSSLRSLIISHCW  168 (360)
Q Consensus       135 ~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~  168 (360)
                      +|+.|++++|.+...+  ..+..+++|+.|++++|.
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cccccccccchhccccccccccCCCccceeecCCCc
Confidence            6666666666665442  345566666666666653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.19  E-value=4e-13  Score=107.66  Aligned_cols=134  Identities=16%  Similarity=0.194  Sum_probs=102.8

Q ss_pred             CCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCC
Q 039007            8 SIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKH   87 (360)
Q Consensus         8 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~   87 (360)
                      ..+...+.+.+...-..-..++..+..+++|++|++++|.+...    + .+..+++|++|++++|.++.+|.....+++
T Consensus        20 ~~~~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i----~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~   94 (198)
T d1m9la_          20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI----S-SLSGMENLRILSLGRNLIKKIENLDAVADT   94 (198)
T ss_dssp             CCCTTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCC----C-CHHHHTTCCEEECCEEEECSCSSHHHHHHH
T ss_pred             CcccccceeeeecccCchhhhhhHHhcccccceeECcccCCCCc----c-cccCCccccChhhccccccccccccccccc
Confidence            34555667777654322223567799999999999999987422    2 378899999999999999888765566678


Q ss_pred             cCeEeccccccccccchhhhcCCccceEeeccccCcCcCC--ccccccccccEEEEeccccccc
Q 039007           88 MRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELP--KDIRYLVSLRMFVVTTKQKSLQ  149 (360)
Q Consensus        88 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p--~~~~~l~~L~~L~l~~~~~~~~  149 (360)
                      |++|++++| .++.++. +..+++|+.|++++|. +..++  ..+..+++|+.|++++|.+...
T Consensus        95 L~~L~l~~N-~i~~l~~-~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_          95 LEELWISYN-QIASLSG-IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             CCEEECSEE-ECCCHHH-HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             ccccccccc-ccccccc-ccccccccccccccch-hccccccccccCCCccceeecCCCccccC
Confidence            999999988 5666654 8889999999999974 44444  3578899999999999976543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.5e-09  Score=81.52  Aligned_cols=104  Identities=12%  Similarity=0.012  Sum_probs=63.7

Q ss_pred             CccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccc-hhhhcCCccceEeeccccCcCcCCccccccccccEEEEe
Q 039007           64 FLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVT  142 (360)
Q Consensus        64 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~  142 (360)
                      ..+.++.+++.+.+.|..+..+++|++|++.++..++.++ ..|..+++|+.|++++|.+..--|..+..+++|+.|+++
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            3445566666666666666667777777776554455554 346667777777777664333224456677777777777


Q ss_pred             ccccccccccCCCCCCCcEeeccCC
Q 039007          143 TKQKSLQESGIACLSSLRSLIISHC  167 (360)
Q Consensus       143 ~~~~~~~~~~~~~l~~L~~L~l~~~  167 (360)
                      +|.+..++........|+.|++++|
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSGN  113 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSS
T ss_pred             CCCCcccChhhhccccccccccCCC
Confidence            7776665544444445666766665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=5.1e-09  Score=79.79  Aligned_cols=86  Identities=17%  Similarity=0.150  Sum_probs=36.9

Q ss_pred             hhccCccccEEEEeccC-CCCcccchHHHhhcCCCccEEEEeCCCCcccC-cCCCCCCCcCeEeccccccccccchhhhc
Q 039007           31 LLSDLRRVRTILFSIND-ENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-REIGNLKHMRYLDLSRYCQIKKLPNSICE  108 (360)
Q Consensus        31 ~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  108 (360)
                      .+.++++|++|.+.++. +   ....+..|.++++|+.|++++|.++.++ ..|..+++|++|++++| .++.+|.....
T Consensus        26 ~l~~l~~l~~L~l~~n~~l---~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~  101 (156)
T d2ifga3          26 HLPGAENLTELYIENQQHL---QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQ  101 (156)
T ss_dssp             TSCSCSCCSEEECCSCSSC---CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTC
T ss_pred             cccCccccCeeecCCCccc---cccCchhhccccccCcceeeccccCCcccccccccccccceeccCC-CCcccChhhhc
Confidence            34444555555554332 2   2222233444555555555555544332 22444445555555444 33333333333


Q ss_pred             CCccceEeeccc
Q 039007          109 LQSLQTLILRGC  120 (360)
Q Consensus       109 l~~L~~L~l~~~  120 (360)
                      ..+|+.|++++|
T Consensus       102 ~~~l~~L~L~~N  113 (156)
T d2ifga3         102 GLSLQELVLSGN  113 (156)
T ss_dssp             SCCCCEEECCSS
T ss_pred             cccccccccCCC
Confidence            334444444443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=1.2e-07  Score=72.45  Aligned_cols=86  Identities=15%  Similarity=0.091  Sum_probs=52.2

Q ss_pred             chHHHhhcCCCccEEEEeCCCCcccC---cCCCCCCCcCeEeccccccccccch-hhhcCCccceEeeccccCcCcCCc-
Q 039007           54 FFTSCISKSQFLRVLDLDDSTIEVLP---REIGNLKHMRYLDLSRYCQIKKLPN-SICELQSLQTLILRGCLKLEELPK-  128 (360)
Q Consensus        54 ~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~-  128 (360)
                      .+...+..++.|++|++++|.++.++   ..+..+++|+.|++++| .++.++. ......+|++|++.+|........ 
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~  134 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLSDTFRDQ  134 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSH
T ss_pred             hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCcCcCcccc
Confidence            34455667888888888888877442   33556788888888877 4444443 223445678888887755443321 


Q ss_pred             ------cccccccccEEE
Q 039007          129 ------DIRYLVSLRMFV  140 (360)
Q Consensus       129 ------~~~~l~~L~~L~  140 (360)
                            .+..+|+|+.|+
T Consensus       135 ~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         135 STYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHHTTSTTCCEET
T ss_pred             hhHHHHHHHHCCCCCEEC
Confidence                  134455555553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.80  E-value=1e-05  Score=61.70  Aligned_cols=63  Identities=17%  Similarity=0.155  Sum_probs=27.8

Q ss_pred             HhhcCCCccEEEEeCCCCc-----ccCcCCCCCCCcCeEecccccccccc----chhhhcCCccceEeeccc
Q 039007           58 CISKSQFLRVLDLDDSTIE-----VLPREIGNLKHMRYLDLSRYCQIKKL----PNSICELQSLQTLILRGC  120 (360)
Q Consensus        58 ~~~~l~~L~~L~l~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~  120 (360)
                      .+...+.|++|++++|.+.     .+...+...+.|++|++++|......    ...+...+.|++|++++|
T Consensus        39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            3444455555555555543     11122333455555555555322211    122333455555555543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=3.5e-06  Score=63.99  Aligned_cols=88  Identities=13%  Similarity=0.045  Sum_probs=64.1

Q ss_pred             hhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CCCCCCCcCeEeccccccccccc----
Q 039007           29 SSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EIGNLKHMRYLDLSRYCQIKKLP----  103 (360)
Q Consensus        29 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~----  103 (360)
                      ...+..+++|++|++++|.+... ..+...+..+++|+.|++++|.++.+++ ......+|+.|++++|.......    
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l-~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRL-DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCC-SGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCC-chhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchh
Confidence            34456899999999999997532 2344568899999999999999987654 22344579999999986544322    


Q ss_pred             ---hhhhcCCccceEee
Q 039007          104 ---NSICELQSLQTLIL  117 (360)
Q Consensus       104 ---~~~~~l~~L~~L~l  117 (360)
                         ..+..+|+|+.|+-
T Consensus       137 y~~~i~~~~P~L~~LDg  153 (162)
T d1koha1         137 YISAIRERFPKLLRLDG  153 (162)
T ss_dssp             HHHHHHTTSTTCCEETT
T ss_pred             HHHHHHHHCCCCCEECc
Confidence               22456899998863

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.58  E-value=1e-05  Score=61.65  Aligned_cols=86  Identities=10%  Similarity=0.132  Sum_probs=41.4

Q ss_pred             CcceEEEeee-ccccccc---hhhhhccCccccEEEEeccCCCC-cccchHHHhhcCCCccEEEEeCCCCc-----ccCc
Q 039007           11 KRVRHLSFVS-ASASRND---FSSLLSDLRRVRTILFSINDENT-SESFFTSCISKSQFLRVLDLDDSTIE-----VLPR   80 (360)
Q Consensus        11 ~~l~~L~l~~-~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~-----~~~~   80 (360)
                      ++++.|+|.+ +.++...   +...+...++|++|++++|.++. ....+...+...+.|++|++++|.++     .+..
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            4555666654 2343321   23344455556666666555431 11223344455555666666665554     1223


Q ss_pred             CCCCCCCcCeEecccc
Q 039007           81 EIGNLKHMRYLDLSRY   96 (360)
Q Consensus        81 ~~~~l~~L~~L~l~~~   96 (360)
                      .+...+.|++|+++++
T Consensus        95 aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          95 STLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HTTTTCCCSEEECCCC
T ss_pred             HHHhCCcCCEEECCCC
Confidence            3445555666666544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.54  E-value=3.2e-05  Score=58.75  Aligned_cols=38  Identities=5%  Similarity=0.218  Sum_probs=16.6

Q ss_pred             hhcCCCccEEEEeCCCCc-----ccCcCCCCCCCcCeEecccc
Q 039007           59 ISKSQFLRVLDLDDSTIE-----VLPREIGNLKHMRYLDLSRY   96 (360)
Q Consensus        59 ~~~l~~L~~L~l~~~~~~-----~~~~~~~~l~~L~~L~l~~~   96 (360)
                      +..+++|++|++++|.++     .+...+...+.++.+++++|
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~   84 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN   84 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc
Confidence            334445555555555443     11222333444555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.03  E-value=8e-05  Score=56.42  Aligned_cols=15  Identities=0%  Similarity=0.018  Sum_probs=7.4

Q ss_pred             CCCCCCcCeEecccc
Q 039007           82 IGNLKHMRYLDLSRY   96 (360)
Q Consensus        82 ~~~l~~L~~L~l~~~   96 (360)
                      +...++|++|++++|
T Consensus        42 l~~n~~L~~L~Ls~n   56 (166)
T d1io0a_          42 LKTNTYVKKFSIVGT   56 (166)
T ss_dssp             HTTCCSCCEEECTTS
T ss_pred             HhcCCccCeeeccCC
Confidence            334455555555554