Citrus Sinensis ID: 039012

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870------
Protein Sequence
MEMKSSGYGIVLVILICALATANITECRKRVPLTFDDGDGGAGDDLVIDDKMVEQTFVHCRNQLVGGEGTAELKSMLLTTRRISEAINDLPPQTKETFLDCLKKSLHFHVSSEEASFTHWSIEYAQLLVSWLNAPRRYLAAELFAERSTKRASLPPVSDSIALPPISVSIATPAPSRQRKGAPASSPSPKPRFHSPPTSPNKRPSPSPQPTAKKKAPPAVIVKNQPEKDQDDDVRHKEIIIAVVATAVTTFALVALLFLCCLKSRSKRIDPVKGQNDDRPLLNSSLSAGMHLSSSVLLLAPYIFLFGSKTYNFTSWNLSFRFLTAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHRQARSISSEGNEVEGESGAAKTKLKPFFWDKVLASPDHAMVWHEISSGSFQFNEEMIESLFGYKPATKSRNECGKSNSVSSESSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDALEEGNELPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELEDVKKAAVIDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEGLRLFTIVRDFLIMLDKSCKQVKITTKPSRTSRKETLTSSPSRENRQPSSDMRQKLFPAIEDRRMDFSSSDDESD
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHccHHHcccccccccccccccccccccccHHHHHHHHHHccHHHcccccHHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcHHHHHHHccccccccccccccccccccccHHHHHHHHHccHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccccccccccHHHHcccHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHcHHHHcccccHHcccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHcHHHHHHHHHHHHccHHHHHHHHHHHHHccccEEcccccccccHHHHHHHcccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHEEEEHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHEEccccccccHHHHHccccccccHHHHHHHHcccccccccccccccccccccccccEEEEEcHHHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHcccHHHccHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccEEEEEHHHHHHHHHccccccccEHHHHHHHHHHHHcccHHHHcccccccccccccccccccccccHHHHHHHHHccccEEcccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHcHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
memkssgyGIVLVILICALATANItecrkrvpltfddgdggagddlviDDKMVEQTFVHcrnqlvggegTAELKSMLLTTRRISEaindlppqtkeTFLDCLKKSLhfhvsseeasftHWSIEYAQLLVSWLNAPRRYLAAELFAerstkraslppvsdsialppisvsiatpapsrqrkgapasspspkprfhspptspnkrpspspqptakkkappavivknqpekdqdddvrHKEIIIAVVATAVTTFALVALLFLCCLKsrskridpvkgqnddrpllnsslsagmhlSSSVLLLAPYIFLfgsktynftswnlsfrfltaphsgssmteaqssnepptlaappppppppgpppppppprprppappkvpapppkpmtgvqkpsplgphrqarsissegnevegesgaaktklkpffwdkvlaspdhaMVWHEISSGSFQFNEEMIESLfgykpatksrnecgksnsvssessAQYIQIIDTRKAQNLSIILRALNLTSEEVVDALEEGNELPLELLQTLLKMapttdeelklrlfpgdisqlgpAERFLKTLVDIPFAFKRIESLIFmgshqedmssIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTgnrmndgtyrggaqaFKLDTLLKLAdvkgtdgkttLLHFVVQEIIRSEGIRAVRTArashstssaslkseefvedsspqsaekYSILGLQVVSGLSTELEDVKKAAVIDADSVTATVSKLSTSLTKTKAFLDTEmknkdektEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTAdyfhgnsgkdegLRLFTIVRDFLIMLDKSCkqvkittkpsrtsrketltsspsrenrqpssdMRQKLFpaiedrrmdfsssddesd
Flexible Loop (DISEMBL)
MEMKSSGYGIVLVILICALATANITECRKRVPLTFDDGDGGAGDDLVIDDKMVEQTFVHcrnqlvggegtAELKSMLLTTRRISEaindlppqtKETFLDCLKKSLHFHVSSEEASFTHWSIEYAQLLVSWLNAPRRYLAAELFAerstkraslppvsdsialppISVSIatpapsrqrkgapasspspkprfhspptspnkrpspspqptakkkappavivknqpekdqdddvRHKEIIIAVVATAVTTFALVALLFLCCLKSrskridpvkgqnddRPLLNSSLSAGMHLSSSVLLLAPYIFLFGSKTYNFTSWNLSFRFLTAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMtgvqkpsplgphrqarsissegnevegesgaaktklkpFFWDKVLASPDHAMVWHEISSGSFQFNEEMIESLFGYKPATKSRNECgksnsvssessAQYIQIIDTRKAQNLSIILRALNLTSEEVVDALEEGNELPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLktgnrmndgtyrgGAQAFKLDTLLKLADVkgtdgkttlLHFVVQEIIRSEGIRAVRTARashstssaslkseefVEDSSPQSAEKYSILGLQVVSGLSTELEDVKKAavidadsvtatvsklstsltktkafldtemknkdektefYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYfhgnsgkdegLRLFTIVRDFLIMLDKsckqvkittkpsrtsrketltsspsrenrqpssdmrqklfpaiedrrmdfsssddesd
Low Complexity Region (SEG)
MEMKSSGYGIVLVILICALATANITECRKRVPLTFddgdggagddlviddKMVEQTFVHCRNQLVGGEGTAELKSMLLTTRRISEAINDLPPQTKETFLDCLKKSLHFHVSSEEASFTHWSIEYAQLLVSWLNAPRRYLAAELFAERSTKRASLPPVSDSIALPPISVSIATPAPSRQRKGapasspspKPRFHSPPTSPNKRpspspqptakkkappaVIVKNQPEKDQDDDVRHKEIIIavvatavttfalvallflcclKSRSKRIDPVKGQNDDRPLLNsslsagmhlsssVLLLAPYIFLFGSKTYNFTSWNLSFRFLTAPHSGSSMTEAQSSNEpptlaappppppppgpppppppprprppappkvpapppkpMTGVQKPSPLGPHRQARsissegnevegesgAAKTKLKPFFWDKVLASPDHAMVWHEISSGSFQFNEEMIESLFGYKPATKSRNECGKSNSVSSESSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDAleegnelplellqtllKMAPTTDEELKLRLFPGDISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDklrssrlflkllEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIravrtarashstssasLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELEDVKKAAVIDADsvtatvsklstsltktkaFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEGLRLFTIVRDFLIMLDKSCKQVKITTKPSRTSRKETLTSSPSRENRQPSSDMRQKLFPAIEDRRMDFSSSDDESD
Disordered region (IsUnstruct)
******GYGIVLVILICALATANITECRKRVPLTFDDGDGGAGDDLVIDDKMVEQTFVHCRNQLVGGEGTAELKSMLLTTRRISEAINDLPPQTKETFLDCLKKSLHFHVSSEEASFTHWSIEYAQLLVSWLNAPRRYLAAELFA******************************************************************************************HKEIIIAVVATAVTTFALVALLFLCCLKS*************************MHLSSSVLLLAPYIFLFGSKTYNFTSWNLSFRFLT********************************************************************************************LKPFFWDKVLASPDHAMVWHEISSGSFQFNEEMIESLFGY**********************QYIQIIDTRKAQNLSIILRALNLTSEEVVDALEEGNELPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQ****SIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIRAV******************************YSILGLQVVSGLSTELEDVKKAAVIDADSVTATVSKLST*LT*TKAFL*********KTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEGLRLFTIVRDFLIMLDKSCKQVKI***************************************************
Disordered Region (DISOPRED)
******G*GIVLVILICALATA***************GDGGAGDDLVIDDKMVEQTFVHCRNQLVGGEGTA******************LPPQTKETFLDCLKKSLHF*****************QL*******************************************************************************************************************VVATAVTTFALVALLFLCC***************************************************************************************************************************************************************FWDKVLASPDHAMVWHEISSGSFQFNEEMIESL******************************IDTRKAQNLSIILRALNLTSEEVVDALEEGNELPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIRAVRTA**********************QSAEKYSILGLQVVSGLSTELEDVKKAAVIDADSVTATVSKLST*LT*********************VVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEGLRLFTIVRDFLIMLDKSCK*******************************************************
Disordered Region (DISEMBL)
MEMKSSGYGIVLVILICALATANITECRKRVPLTFDDGDGGAGDDLVIDDKMVEQTFVHCRNQLVGGEGTAELKSMLLTTRRISEAINDLPPQTKETFLDCLKKSLHFHVSSEEASFTHWSIEYAQLLVSWLNAPRRYLAAELFAERSTKRASLPPVSDSIALPPISVSIAT**********************************************AVIVKNQPEKDQDDDVRHKEIIIAVVATAVTTFALVALLFLCCLKSRSKRIDPVKGQNDDRPLLNSSLSAGMHLSSSVLLLAPYIFLFGSKTYNFTSWNLSFRFLTAP**************************************************PPKPM*******************************AKTKLKPFFWDKVLASPDHAMVWHEISSGSFQFNEEMIESLFGYKPATK****************AQYIQIIDTRKAQNLSIILRALNLTSEEVVDALEEGNELPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIRA****************************AEKYSILGLQVVSGLSTELEDVKKAAVIDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEGLRLFTIVRDFLIMLDKSCKQVK*****************************RQKLFPAIEDRRM**********
Disordered Region (DISPRO)
*EMKSSGYGIVLVILICALATANITECRKRVPLTFDDGDGGAGDDLVIDDKMVEQTFVHCRNQLVGGEGTAELKSMLLTTRRISEAINDLPPQTKETFLDCLKKSLHFHVSSEEASFTHWSIEYAQLLVSWLNAPRRYLAAELFAER************************************************************************************DDVRHKEIIIAVVATAVTTFALVALLFLCCLKSR****************************************************************************************************************************************************KTKLKPFFWDKVLASPDHAMVWHEISSGSFQFNEEMIESLFGYKP*******************AQYIQIIDTRKAQNLSIILRALNLTSEEVVDALEEGNELPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEG****************************PQSAEKYSILGLQVVSGLSTELEDVKKAAVIDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEGLRLFTIVRDFLIMLDKSCKQVKITTKPSR************************KL*P*IE**************
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEMKSSGYGIVLVILICALATANITECRKRVPLTFDDGDGGAGDDLVIDDKMVEQTFVHCRNQLVGGEGTAELKSMLLTTRRISEAINDLPPQTKETFLDCLKKSLHFHVSSEEASFTHWSIEYAQLLVSWLNAPRRYLAAELFAERSTKRASLPPVSDSIALPPISVSIATPAPSRQRKGAPASSPSPKPRFHSPPTSPNKRPSPSPQPTAKKKAPPAVIVKNQPEKDQDDDVRHKEIIIAVVATAVTTFALVALLFLCCLKSRSKRIDPVKGQNDDRPLLNSSLSAGMHLSSSVLLLAPYIFLFGSKTYNFTSWNLSFRFLTAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHRQARSISSEGNEVEGESGAAKTKLKPFFWDKVLASPDHAMVWHEISSGSFQFNEEMIESLFGYKPATKSRNECGKSNSVSSESSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDALEEGNELPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELEDVKKAAVIDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEGLRLFTIVRDFLIMLDKSCKQVKITTKPSRTSRKETLTSSPSRENRQPSSDMRQKLFPAIEDRRMDFSSSDDESD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	876	2.2.26 [Sep-21-2011]
O23373	785	Formin-like protein 3 OS=	yes	no	0.765	0.854	0.535	0.0
Q0D5P3	929	Formin-like protein 11 OS	yes	no	0.527	0.497	0.538	1e-144
Q6MWG9	906	Formin-like protein 18 OS	no	no	0.464	0.449	0.524	1e-128
Q10Q99	892	Formin-like protein 8 OS=	no	no	0.509	0.5	0.474	1e-110
Q9MA60	884	Formin-like protein 11 OS	no	no	0.484	0.479	0.453	1e-104
Q9FJX6	899	Formin-like protein 6 OS=	no	no	0.449	0.438	0.469	1e-103
Q8H8K7	849	Formin-like protein 4 OS=	no	no	0.440	0.454	0.497	1e-101
O22824	894	Formin-like protein 2 OS=	no	no	0.526	0.515	0.440	1e-100
Q9SE97	1051	Formin-like protein 1 OS=	no	no	0.455	0.379	0.469	1e-99
Q8S0F0	960	Formin-like protein 1 OS=	no	no	0.478	0.436	0.446	4e-99

>sp|O23373|FH3_ARATH Formin-like protein 3 OS=Arabidopsis thaliana GN=FH3 PE=2 SV=3

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/721 (53%), Positives = 490/721 (67%), Gaps = 50/721 (6%)

Query: 173 PAPSRQRKGAPASSPSPKPR-----FHSPPTSPNKRPSPSPQPTAKK--KAPPAVIVKNQ 225
           PAPS      P+ +P P P      + +P +SPN+ P+ +P  ++    +  P+V+  +Q
Sbjct: 73  PAPSFAPGPGPSFAPGPAPNPRSYDWLAPASSPNEPPAETPDESSPSPSEETPSVVAPSQ 132

Query: 226 P---------EKDQDDDVRHKEIIIAVVATAVTTFALVALLFLCCLKSRSKR-IDPVKGQ 275
                     ++++ DD+  K +IIAV +TAV TF  VAL+FLCC K      +    G 
Sbjct: 133 SVPGPPRPPPQREKKDDILMK-LIIAVASTAVLTFVFVALMFLCCFKRNCNNAVGSRDGP 191

Query: 276 NDDRPLLNSSLSAGMHLSS-SVLLLAPYIF-LFGSKTYNFTSWNLSFRFLTAPHSGSSMT 333
            D+ PLL   LS G   +S +V   +  +F +  SK  +F S       ++   +G   +
Sbjct: 192 RDEGPLLR--LSTGSTENSPTVASTSRKMFSVASSKKRSFLSR------VSLKRNGHEFS 243

Query: 334 EAQSSNEPPTLAAPPPPPPPPG--------PPPPPPPPRPRPPAPPKVPAPPPKPMTGVQ 385
            A+SS    + A  PP   PPG           PPP P P PP  P+ P PP        
Sbjct: 244 TAESS----SAAGLPPLKLPPGRSAPPPPPAAAPPPQPPPPPPPKPQPPPPPKIARPPPA 299

Query: 386 KPSPLGPHRQARSISSEGNEVEGESGAAKTKLKPFFWDKVLASPDHAMVWHEISSGSFQF 445
            P    P RQ  + S + ++V+ E+GA KTKLKPFFWDK +A+PD  MVWHEIS+GSFQF
Sbjct: 300 PPKGAAPKRQGNTSSGDASDVDSETGAPKTKLKPFFWDK-MANPDQKMVWHEISAGSFQF 358

Query: 446 NEEMIESLFGYKPATKSRNECGKSNSVSSESSAQYIQIIDTRKAQNLSIILRALNLTSEE 505
           NEE +ESLFGY    K++N    ++S   ES  QYIQIIDTRKAQNLSI+LRALN+T+EE
Sbjct: 359 NEEAMESLFGYNDGNKNKNGQKSTDSSLRESPLQYIQIIDTRKAQNLSILLRALNVTTEE 418

Query: 506 VVDALEEGNELPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAERFLKTLVDIPFAFK 565
           VVDA++EGNELP+ELLQTLLKMAPT++EELKLRL+ GD+  LGPAERFLK LVDIPFAFK
Sbjct: 419 VVDAIKEGNELPVELLQTLLKMAPTSEEELKLRLYSGDLHLLGPAERFLKILVDIPFAFK 478

Query: 566 RIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGG 625
           RIESL+FM S QE++S +K++  TLEVAC KLR+SRLFLKLLEAVLKTGNRMN GT+RG 
Sbjct: 479 RIESLLFMISLQEEVSGLKEALGTLEVACKKLRNSRLFLKLLEAVLKTGNRMNVGTFRGD 538

Query: 626 AQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEF 685
           AQAFKLDTLLKL+DVKGTDGKTTLLHFVV EIIRSEG+RA+R      S S +S+K+++ 
Sbjct: 539 AQAFKLDTLLKLSDVKGTDGKTTLLHFVVLEIIRSEGVRALRL----QSRSFSSVKTDDS 594

Query: 686 VEDSSPQSAEKYSILGLQVVSGLSTELEDVKKAAVIDADSVTATVSKLSTSLTKTKAFLD 745
             DSSPQS E+Y   GLQVV+GL+TELEDVK+AA+IDAD + AT++ +S SLT  + FL 
Sbjct: 595 NADSSPQSVERYRSTGLQVVTGLTTELEDVKRAAIIDADGLAATLANISGSLTNAREFL- 653

Query: 746 TEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEGLRL 805
              K  DE+++F   +  F+ERA+ D  WL EEE+RIM LVKS+ADYFHG S K+EGLRL
Sbjct: 654 ---KTMDEESDFERALAGFIERADADFKWLKEEEERIMVLVKSSADYFHGKSAKNEGLRL 710

Query: 806 FTIVRDFLIMLDKSCKQVKITTKPSRTSRKETLTSSPSRENRQPSSDMRQKLFPAIEDRR 865
           F IVRDFLIML+K C++VK TTK +  S K+    + S  N QPS D RQ+LFPAI +RR
Sbjct: 711 FAIVRDFLIMLEKVCREVKETTKTTNHSGKKESEMTTSDSN-QPSPDFRQRLFPAIAERR 769

Query: 866 M 866
           M
Sbjct: 770 M 770

Acts as actin nucleation factor that directs the formation of actin cables and polarized growth in pollen tubes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0D5P3|FH11_ORYSJ Formin-like protein 11 OS=Oryza sativa subsp. japonica GN=FH11 PE=2 SV=1

 Score =  512 bits (1319), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 258/479 (53%), Positives = 352/479 (73%), Gaps = 17/479 (3%)

Query: 387 PSPLGPHRQARSISSEGNEVEGESGAAKTKLKPFFWDKVLASPDHAMVWHEISSGSFQFN 446
           P PL P  +  ++ +        S  AKTKLKPFFWDKV A+P  +MVW  + SGSFQFN
Sbjct: 456 PPPLKPGAKVGAVEN--------SNEAKTKLKPFFWDKVTANPARSMVWDHLKSGSFQFN 507

Query: 447 EEMIESLFGYKPATKSRNECGKSNSVSSESSAQYIQIIDTRKAQNLSIILRALNLTSEEV 506
           E+++E+LFGY    KS +       +SS+ + Q I+I+D +KAQNL+I LRAL ++ +EV
Sbjct: 508 EQLMENLFGYNSTDKSSD---TKKDLSSKDATQLIRILDPKKAQNLAISLRALGVSPQEV 564

Query: 507 VDALEEGNELPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAERFLKTLVDIPFAFKR 566
             A++EG+ELP +L+QTL++ +P+ DEEL+LRL+ G++ QLGPAE+FL+ ++DIP+ F+R
Sbjct: 565 CSAVKEGSELPSDLIQTLIRWSPSNDEELRLRLYSGELFQLGPAEQFLRVIIDIPYIFQR 624

Query: 567 IESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGA 626
           +++L+FM +  E+ S++K SF TLEVAC +LR+SRLF+KLLEAVLKTGNRMN GT+RGGA
Sbjct: 625 LDALLFMANLPEEASNVKQSFATLEVACQELRNSRLFMKLLEAVLKTGNRMNVGTFRGGA 684

Query: 627 QAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFV 686
           QAF+LDTLLKL+DVKGTDGKTTLLHFVVQEIIRSEG+RA R A+  +S  S S+K+++  
Sbjct: 685 QAFRLDTLLKLSDVKGTDGKTTLLHFVVQEIIRSEGVRAERAAKEQNSGVS-SVKTDDL- 742

Query: 687 EDSSPQSAEKYSILGLQVVSGLSTELEDVKKAAVIDADSVTATVSKLSTSLTKTKAFLDT 746
            D S Q+ + Y  LGL+V+S L  EL+DV+KAA++DAD +T +V+ L   L KT  FL+ 
Sbjct: 743 GDKSEQTEDGYKQLGLKVISSLGDELQDVRKAAILDADQLTMSVASLGHKLMKTNEFLNM 802

Query: 747 EMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEGLRLF 806
           +MK+ DE + F+  +T F+++++TDI +LLEEEK++  LVK T DYFHG++GKDEGLRLF
Sbjct: 803 DMKSLDEDSGFHRKLTHFVQQSQTDITFLLEEEKKMRLLVKDTVDYFHGSAGKDEGLRLF 862

Query: 807 TIVRDFLIMLDKSCKQVKITTKPSRTSRKETLTSSPSRENRQPSSDMRQKLFPAIEDRR 865
            IVRDFL MLDK CK+VK  +K +    K    S   +  R P    R  LFPAI+  R
Sbjct: 863 VIVRDFLAMLDKVCKEVKEASKVAPVKAKAKQPSQSLQSFRDP----RVNLFPAIQHLR 917

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6MWG9|FH18_ORYSJ Formin-like protein 18 OS=Oryza sativa subsp. japonica GN=FH18 PE=2 SV=1

 Score =  459 bits (1181), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/433 (52%), Positives = 319/433 (73%), Gaps = 26/433 (6%)

Query: 414 KTKLKPFFWDKVLASPDHAMVWHEISSGSFQFNEEMIESLFGYKPATKSRNECGKSNSVS 473
           K KLKPFFWDKV A+P+ AMVW +I +GSFQFNEEMIESLFG +   K   +  K    S
Sbjct: 418 KAKLKPFFWDKVTANPNQAMVWDQIKAGSFQFNEEMIESLFGAQSTEKKSTDAKKE---S 474

Query: 474 SESSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDALEEGNELPLELLQTLLKMAPTTDE 533
            + + Q+++I+D +KAQNL+I L+AL++++E+V  A+ EG++LP +L+QTL++ +PT+DE
Sbjct: 475 GKEATQFVRILDPKKAQNLAISLKALSVSAEQVRAAVMEGHDLPPDLIQTLVRWSPTSDE 534

Query: 534 ELKLRLFPGDISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVA 593
           EL+LRL+ G+ +QLGPAE+F++ ++D+P+ ++R+++L+FM +  E+ ++++ SF TLEVA
Sbjct: 535 ELRLRLYAGEPAQLGPAEQFMRAIIDVPYLYQRLDALLFMAALPEEAAAVEQSFATLEVA 594

Query: 594 CDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLHFV 653
           C++LR SRLF KLLEAVLKTGNRMNDGT+RGGAQAFKLDTLLKLADVKG DGKTTLLHFV
Sbjct: 595 CEELRGSRLFKKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLADVKGVDGKTTLLHFV 654

Query: 654 VQEIIRSEGIRAVRTARASHSTSSAS----------LKSEEFVEDSSPQSA--------- 694
           VQEIIRSEG+RA R A      SS S          L+S+  +  +S +S+         
Sbjct: 655 VQEIIRSEGVRAARAASGGGGGSSISSISSSDDLILLQSQSSIGSNSGRSSVDASSLEQE 714

Query: 695 ----EKYSILGLQVVSGLSTELEDVKKAAVIDADSVTATVSKLSTSLTKTKAFLDTEMKN 750
               E+Y  LGL VVS L  +L++V+KAA  DAD++T TV+ L   L K   FL T M++
Sbjct: 715 QDETERYRQLGLGVVSSLGDDLQNVRKAASFDADALTITVASLGHRLVKANEFLSTGMRS 774

Query: 751 KDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEGLRLFTIVR 810
            +E + F   +  F+++++  +  LLE+EKR+ +LV++T DYFHG++GKDEGLRLF +VR
Sbjct: 775 LEEDSGFQRRLASFVQQSQEQVTRLLEDEKRLRSLVRATVDYFHGSTGKDEGLRLFVVVR 834

Query: 811 DFLIMLDKSCKQV 823
           DFL +LDK C++V
Sbjct: 835 DFLGILDKVCREV 847

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q10Q99|FH8_ORYSJ Formin-like protein 8 OS=Oryza sativa subsp. japonica GN=FH8 PE=2 SV=1

 Score =  398 bits (1023), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 229/483 (47%), Positives = 310/483 (64%), Gaps = 37/483 (7%)

Query: 352 PPPGPPPPPPPPR-----PRPPAPPKVPAPPPKPMTGVQKPSPLGPHRQARSISSEGNEV 406
           P P  PP  P  R     P PP  P++  P P         +     R+  + +++    
Sbjct: 390 PKPAEPPAVPTSRRRLLKPLPPEGPRIAMPMPITAATTVDNNGSTSMREGDNAAAD---- 445

Query: 407 EGESGAAKTKLKPFFWDKVLASPDHAMVWHEISSGSFQFNEEMIESLF--GYKPATKSRN 464
           +G SG  + KLKP  WDKV A+ D AMVW ++ S SFQ +E+MIE+LF     PA   R 
Sbjct: 446 DGGSGEPRPKLKPLHWDKVRATSDRAMVWDQLKSSSFQLDEDMIEALFMNNSTPAAPPRE 505

Query: 465 ECGKSNSVSSESSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDALEEGNE--LPLELLQ 522
              K+  V S    Q  +++D +KAQN++I+LRALN+T EEV DAL +GN   L  ELL+
Sbjct: 506 VGRKAAGVPS--FRQEERVLDPKKAQNIAILLRALNVTREEVSDALLDGNAECLGSELLE 563

Query: 523 TLLKMAPTTDEELKLRLFPGDISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSS 582
           TL+KMAPT +EELKLR + GD+S+LG AERFLK ++DIPFAFKR++++++  + + +++ 
Sbjct: 564 TLVKMAPTKEEELKLRDYSGDLSKLGSAERFLKAVLDIPFAFKRVDAMLYRANFETEINY 623

Query: 583 IKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKG 642
           +++SF+TLE AC+ LR SRLFLKLLEAVL+TGNRMN GT RG A+AFKLDTLLKLADVKG
Sbjct: 624 LRNSFETLEAACEDLRGSRLFLKLLEAVLRTGNRMNVGTNRGEAKAFKLDTLLKLADVKG 683

Query: 643 TDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGL 702
           TDGKTTLLHFVVQEIIRSE  ++                 +E    SS +   K+   GL
Sbjct: 684 TDGKTTLLHFVVQEIIRSEDAKS----------------EKESAMISSSKDDRKH---GL 724

Query: 703 QVVSGLSTELEDVKKAAVIDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVT 762
           +VVSGLS+EL +VKKAA +D D +   V+KL T L K K+ L  E K   +   F+  + 
Sbjct: 725 KVVSGLSSELGNVKKAATMDFDVLHGYVNKLETGLEKIKSVLQLEKKCT-QGQRFFMSMQ 783

Query: 763 KFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEG--LRLFTIVRDFLIMLDKSC 820
            FL+ AE +I  +  EE+R +  VK   +YFHG++ K+E   LR+F +VRDFL  LD+ C
Sbjct: 784 DFLKEAEREIERVRGEERRALGRVKDITEYFHGDTAKEEAHPLRIFMVVRDFLSTLDQVC 843

Query: 821 KQV 823
           ++V
Sbjct: 844 REV 846

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9MA60|FH11_ARATH Formin-like protein 11 OS=Arabidopsis thaliana GN=FH11 PE=2 SV=1

 Score =  380 bits (977), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/459 (45%), Positives = 290/459 (63%), Gaps = 35/459 (7%)

Query: 376 PPPKPMTGVQKPSPLGPHRQARSISSEGNEVEGESGAAKTKLKPFFWDKVLASPDHAMVW 435
           PPP  +   ++  PL                 G+ GA   KLKP  WDKV A+PD  MVW
Sbjct: 448 PPPLSLDFSER-RPL-----------------GKDGAPLPKLKPLHWDKVRATPDRTMVW 489

Query: 436 HEISSGSFQFNEEMIESLFGYKPATKSRNECGKSNSVSSESSAQYIQIIDTRKAQNLSII 495
            ++ + SF+ +EEMIESLFGY   + ++NE GKS + S         +++ ++ QN +I+
Sbjct: 490 DKLRTSSFELDEEMIESLFGYTMQSSTKNEEGKSKTPSPGK-----HLLEPKRLQNFTIL 544

Query: 496 LRALNLTSEEVVDALEEGNELPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAERFLK 555
           L+ALN T++++  AL +G  L L+ L+ L+KM PT +EELKLR + G + +LG AE+FL+
Sbjct: 545 LKALNATADQICSALGKGEGLCLQQLEALVKMVPTKEEELKLRSYKGAVDELGSAEKFLR 604

Query: 556 TLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGN 615
            LV +PFAF+R E++++  + ++++  +++SF  LE AC +L+SSRLFLKLLEAVLKTGN
Sbjct: 605 ALVGVPFAFQRAEAMLYRETFEDEVVHLRNSFSMLEEACKELKSSRLFLKLLEAVLKTGN 664

Query: 616 RMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIRAVRT--ARASH 673
           RMN GT RGGA+AFKLD LLKL+DVKGTDGKTTLLHFVVQEI RSEGIR   +   R  +
Sbjct: 665 RMNVGTIRGGAKAFKLDALLKLSDVKGTDGKTTLLHFVVQEISRSEGIRVSDSIMGRIMN 724

Query: 674 STSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELEDVKKAAVIDADSVTATVSKL 733
             S+ +   EE  ED        Y  +GL +VSGL+TEL +VKK A ID + +  +VS L
Sbjct: 725 QRSNKNRTPEEKEED--------YRRMGLDLVSGLNTELRNVKKTATIDLEGLVTSVSNL 776

Query: 734 STSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYF 793
              L +       ++K  +E   F + ++ FL   E  +  L E+EKRIM  V   A+YF
Sbjct: 777 RDGLGQLSCLASEKLKGDEENRAFVSSMSSFLRYGEKSLEELREDEKRIMERVGEIAEYF 836

Query: 794 HGNSGKDEG--LRLFTIVRDFLIMLDKSCKQVKITTKPS 830
           HG+   DE   LR+F IVRDFL MLD  C++++    P+
Sbjct: 837 HGDVRGDEKNPLRIFVIVRDFLGMLDHVCRELRCVRVPN 875

Might be involved in the organization and polarity of the actin cytoskeleton.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJX6|FH6_ARATH Formin-like protein 6 OS=Arabidopsis thaliana GN=FH6 PE=1 SV=1

 Score =  376 bits (966), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/422 (46%), Positives = 281/422 (66%), Gaps = 28/422 (6%)

Query: 407 EGESGAAKTKLKPFFWDKVLASPDHAMVWHEISSGSFQFNEEMIESLFGYKPATKSRNEC 466
           +G++  +K KLKP  WDKV AS D A VW ++ S SFQ NE+ +E LFG    + +  E 
Sbjct: 452 DGDTDPSKPKLKPLHWDKVRASSDRATVWDQLKSSSFQLNEDRMEHLFGCNSGSSAPKEP 511

Query: 467 GKSNSVSSESSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDALEEGN--ELPLELLQTL 524
            + + +    +    +++D +K+QN++I+LRALN+T EEV +AL +GN   L  ELL+TL
Sbjct: 512 VRRSVIPLAENEN--RVLDPKKSQNIAILLRALNVTREEVSEALTDGNPESLGAELLETL 569

Query: 525 LKMAPTTDEELKLRLFPGDISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIK 584
           +KMAPT +EE+KLR + GD+S+LG AERFLKT++DIPFAFKR+E++++  +   ++  ++
Sbjct: 570 VKMAPTKEEEIKLREYSGDVSKLGTAERFLKTILDIPFAFKRVEAMLYRANFDAEVKYLR 629

Query: 585 DSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTD 644
           +SF+TLE A  +L++SRLFLKLLEAVL TGNRMN GT RG A AFKLDTLLKL D+KG D
Sbjct: 630 NSFQTLEEASLELKASRLFLKLLEAVLMTGNRMNVGTNRGDAIAFKLDTLLKLVDIKGVD 689

Query: 645 GKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQV 704
           GKTTLLHFVVQEI RSEG    +     H  +    K                   GLQV
Sbjct: 690 GKTTLLHFVVQEITRSEGTTTTKDETILHGNNDGFRKQ------------------GLQV 731

Query: 705 VSGLSTELEDVKKAAVIDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKF 764
           V+GLS +L +VKK+A +D D +++ V+KL   L K ++FL TE      +  F++ +  F
Sbjct: 732 VAGLSRDLVNVKKSAGMDFDVLSSYVTKLEMGLDKLRSFLKTETT----QGRFFDSMKTF 787

Query: 765 LERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEG--LRLFTIVRDFLIMLDKSCKQ 822
           L+ AE +I  +   E++ +++VK   +YFHGN+ ++E   LR+F +VRDFL +LD  CK+
Sbjct: 788 LKEAEEEIRKIKGGERKALSMVKEVTEYFHGNAAREEAHPLRIFMVVRDFLGVLDNVCKE 847

Query: 823 VK 824
           VK
Sbjct: 848 VK 849

Might be involved in the organization and polarity of the actin cytoskeleton.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H8K7|FH4_ORYSJ Formin-like protein 4 OS=Oryza sativa subsp. japonica GN=FH4 PE=3 SV=1

 Score =  370 bits (951), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/412 (49%), Positives = 272/412 (66%), Gaps = 26/412 (6%)

Query: 416 KLKPFFWDKVLASPDHAMVWHEISSGSFQFNEEMIESLFGYKPATKSRNECGKSNSVSSE 475
           KLKP  WDKV  S D  MVW  +     + +E+MIE LF    +T           V   
Sbjct: 415 KLKPLHWDKVRTSSDRDMVWDRL-----KLDEDMIEVLF-MNNSTAVAPRMDNPKKVGMP 468

Query: 476 SSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDALEEGNE--LPLELLQTLLKMAPTTDE 533
              Q  +++D +KAQN++I+LRALN+T EEV DAL +GN   L  ELL+TL+KMAPT +E
Sbjct: 469 QFKQEERVLDPKKAQNIAILLRALNVTLEEVTDALLDGNAECLGAELLETLVKMAPTKEE 528

Query: 534 ELKLRLFPGDISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVA 593
           ELKLR F GD+S+LG AERFLK ++DIPFAFKR++ +++  + + +++ ++ SF+TLE A
Sbjct: 529 ELKLRDFTGDLSKLGSAERFLKAVLDIPFAFKRVDVMLYRANFENEVNYLRKSFQTLEAA 588

Query: 594 CDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLHFV 653
           CD L+ SRLFLKLLEAVL+TGNRMN GT RG A+AFKLDTLLKLADVKG DGKTTLLHFV
Sbjct: 589 CDDLKGSRLFLKLLEAVLRTGNRMNVGTNRGEAKAFKLDTLLKLADVKGADGKTTLLHFV 648

Query: 654 VQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELE 713
           VQEI+RSE  ++ + A  +H T+ A +              E+    GL+VVSGLSTEL 
Sbjct: 649 VQEIVRSEDAKSEK-APENHITNIAKV--------------EQLRRQGLKVVSGLSTELG 693

Query: 714 DVKKAAVIDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIA 773
           +VK+AA +D D +   VSKL   L K K+ L  E K   +   F+  + +FL+ AE +I 
Sbjct: 694 NVKRAATMDFDVLHGYVSKLEAGLGKIKSVLQLE-KQCSQGVNFFATMREFLKEAEQEIE 752

Query: 774 WLLEEEKRIMALVKSTADYFHGNSGKDEG--LRLFTIVRDFLIMLDKSCKQV 823
            +  +EK  +  VK   +YFHGN+ K+E   LR+F +VRDFL MLD  C++V
Sbjct: 753 QVRHDEKAALGRVKEITEYFHGNAVKEEAHPLRIFMVVRDFLSMLDHVCREV 804

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O22824|FH2_ARATH Formin-like protein 2 OS=Arabidopsis thaliana GN=FH2 PE=3 SV=1

 Score =  365 bits (938), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/493 (44%), Positives = 298/493 (60%), Gaps = 32/493 (6%)

Query: 392 PHRQARSISSEGNEVEGESGAAKTKLKPFFWDKVLASPDHAMVWHEISSGSFQFNEEMIE 451
           P   + S+  + ++ E +    K KLK   WDKV AS    MVW +I S SFQ NEEMIE
Sbjct: 423 PATMSHSLPGDDSDPEKKVETMKPKLKTLHWDKVRASSSRVMVWDQIKSNSFQVNEEMIE 482

Query: 452 SLFGYKPATKSRNECGKSNSVSSESSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDALE 511
           +LF     T SR   G   SVS E+     + +D RK+ N++I+LRALN+T++EV +AL 
Sbjct: 483 TLFKVNDPT-SRTRDGVVQSVSQEN-----RFLDPRKSHNIAILLRALNVTADEVCEALI 536

Query: 512 EGNELPL--ELLQTLLKMAPTTDEELKLRLFP----GDISQLGPAERFLKTLVDIPFAFK 565
           EGN   L  ELL+ LLKMAPT +EE KL+       G  S++GPAE+FLK L++IPFAFK
Sbjct: 537 EGNSDTLGPELLECLLKMAPTKEEEDKLKELKDDDDGSPSKIGPAEKFLKALLNIPFAFK 596

Query: 566 RIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGG 625
           RI++++++   + ++  +  SF TLE A  +L+++R+FLKLLEAVLKTGNRMN GT RG 
Sbjct: 597 RIDAMLYIVKFESEIEYLNRSFDTLEAATGELKNTRMFLKLLEAVLKTGNRMNIGTNRGD 656

Query: 626 AQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEF 685
           A AFKLDTLLKL D+KG DGKTTLLHFVVQEII+ EG R   T   SH         +  
Sbjct: 657 AHAFKLDTLLKLVDIKGADGKTTLLHFVVQEIIKFEGARVPFTPSQSHI-------GDNM 709

Query: 686 VEDSSPQSAEKYSILGLQVVSGLSTELEDVKKAAVIDADSVTATVSKLSTSLTKTKAFLD 745
            E S+ Q   +   LGLQVVSGLS++L +VKKAA +D++S+    ++++  + K K  + 
Sbjct: 710 AEQSAFQDDLELKKLGLQVVSGLSSQLINVKKAAAMDSNSLINETAEIARGIAKVKEVI- 768

Query: 746 TEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEGLRL 805
           TE+K +     F   +  FL + E +I  L      +M +VK   +YFHGNS +    R+
Sbjct: 769 TELKQETGVERFLESMNSFLNKGEKEITELQSHGDNVMKMVKEVTEYFHGNS-ETHPFRI 827

Query: 806 FTIVRDFLIMLDKSCKQVKITTKPSRTSRKETLTSSPSRENRQPSSDMRQKLFPAI--ED 863
           F +VRDFL +LD+ CK+V       R + +    S P      PS+     LFP +   +
Sbjct: 828 FAVVRDFLTILDQVCKEV------GRVNERTVYGSMPL---HSPSNQTATPLFPVVINNN 878

Query: 864 RRMDFSSSDDESD 876
            R+  S S D+ D
Sbjct: 879 SRLSPSGSLDDDD 891

Might be involved in the organization and polarity of the actin cytoskeleton.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SE97|FH1_ARATH Formin-like protein 1 OS=Arabidopsis thaliana GN=FH1 PE=1 SV=1

 Score =  364 bits (935), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 202/430 (46%), Positives = 280/430 (65%), Gaps = 31/430 (7%)

Query: 410 SGAAKT----KLKPFFWDKVLASPDHAMVWHEISSGSFQFNEEMIESLFGYKPATKSRNE 465
           S AA+     KLK   WDKV AS D  MVW  + S SF+ +EEMIE+LF  K      N+
Sbjct: 587 SEAAEETPKPKLKALHWDKVRASSDREMVWDHLRSSSFKLDEEMIETLFVAKSLNNKPNQ 646

Query: 466 CGKSNSVSSESSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDALEEGNE--LPLELLQT 523
              +      S  Q  +++D +KAQN++I+LRALN+T EEV +AL EGN   L  ELL++
Sbjct: 647 SQTTPRCVLPSPNQENRVLDPKKAQNIAILLRALNVTIEEVCEALLEGNADTLGTELLES 706

Query: 524 LLKMAPTTDEELKLRLFPGDI-SQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSS 582
           LLKMAPT +EE KL+ +  D   +LG AE+FLK ++DIPFAFKR+++++++ + + ++  
Sbjct: 707 LLKMAPTKEEERKLKAYNDDSPVKLGHAEKFLKAMLDIPFAFKRVDAMLYVANFESEVEY 766

Query: 583 IKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKG 642
           +K SF+TLE AC++LR+SR+FLKLLEAVLKTGNRMN GT RG A AFKLDTLLKL DVKG
Sbjct: 767 LKKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKG 826

Query: 643 TDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGL 702
            DGKTTLLHFVVQEIIR+EG R      + ++T +  +K  +               LGL
Sbjct: 827 ADGKTTLLHFVVQEIIRAEGTRL-----SGNNTQTDDIKCRK---------------LGL 866

Query: 703 QVVSGLSTELEDVKKAAVIDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKT--EFYNV 760
           QVVS L +EL +VKKAA +D++ +++ VSKLS  + K    +  +    +E     F   
Sbjct: 867 QVVSSLCSELSNVKKAAAMDSEVLSSYVSKLSQGIAKINEAIQVQSTITEESNSQRFSES 926

Query: 761 VTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEG--LRLFTIVRDFLIMLDK 818
           +  FL+RAE +I  +  +E   ++LVK   +YFHGNS K+E    R+F +VRDFL ++D+
Sbjct: 927 MKTFLKRAEEEIIRVQAQESVALSLVKEITEYFHGNSAKEEAHPFRIFLVVRDFLGVVDR 986

Query: 819 SCKQVKITTK 828
            CK+V +  +
Sbjct: 987 VCKEVGMINE 996

Might be involved in the organization and polarity of the actin cytoskeleton. Involved in polar pollen cell growth process by maintaining tip-focused cell membrane expansion for the polar extension of pollen tubes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S0F0|FH1_ORYSJ Formin-like protein 1 OS=Oryza sativa subsp. japonica GN=FH1 PE=2 SV=1

 Score =  363 bits (932), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 218/488 (44%), Positives = 299/488 (61%), Gaps = 69/488 (14%)

Query: 416 KLKPFFWDKVLASPDHAMVWHEISSGSFQFNEEMIESLFGYKPATKSRNECGKSNSVSSE 475
           KLKP  WDKV AS D  MVW ++ S SFQ NEEMIE+LF   PA  +  +   +      
Sbjct: 506 KLKPLHWDKVRASSDRVMVWDQLKSSSFQVNEEMIETLFICNPANSAPPKEPATRRPVLP 565

Query: 476 SSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDALEEGN--ELPLELLQTLLKMAPTTDE 533
           +     +++D +K+QN++I+LRALN++ E+V DAL EGN      ELL+TLLKMAPT +E
Sbjct: 566 TPKTDNKVLDPKKSQNIAILLRALNVSKEQVCDALCEGNTENFGAELLETLLKMAPTKEE 625

Query: 534 ELKLRLFPGDIS--QLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLE 591
           E+KLR F  + S  +LGPAE+FLK ++DIPFAFKR+++++++ + + +++ +K SF+TLE
Sbjct: 626 EIKLREFKEETSPIKLGPAEKFLKAVLDIPFAFKRVDAMLYIANFESEVNYLKKSFETLE 685

Query: 592 VACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLH 651
            ACD+LR+SRLFLKLLEAVLKTGNRMN GT RG A AFKLDTLLKL DVKGTDGKTTLLH
Sbjct: 686 TACDELRNSRLFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGTDGKTTLLH 745

Query: 652 FVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTE 711
           FVVQEIIR+EG     + +++  T +  L+ E   +            LGLQVV+GL  E
Sbjct: 746 FVVQEIIRTEGSHLSASNQSTPRTQANPLRDELECKK-----------LGLQVVAGLGNE 794

Query: 712 LEDVKKAAVIDADSVTATVSKLSTSLTKTKAFL--DTEMKNKDEKTEFYNVVTKFLERAE 769
           L +VKKAA +D+D +++ VSKL+  + K    L  + E+K++++                
Sbjct: 795 LSNVKKAAAMDSDVLSSYVSKLAGGIEKITEVLRLNEEVKSRED---------------- 838

Query: 770 TDIAWLLE-------------------EEKRIMALVKSTADYFHGNSGKDEG--LRLFTI 808
              AW                      +E   ++LVK   +YFHG+S K+E    R+F +
Sbjct: 839 ---AWRFHDSMQKFLKRADDDIIRVQAQESVALSLVKEITEYFHGDSAKEEAHPFRIFMV 895

Query: 809 VRDFLIMLDKSCKQV-KITTKPSRTSRKETLTSSPSRENRQPSSDMRQKLFPAIEDRRMD 867
           VRDFL +LD+ CK+V +I  +        T+ SS  R    P + M  +LFP I   R  
Sbjct: 896 VRDFLSVLDQVCKEVGRINDR--------TIASS-VRHFPVPVNPMMPQLFPRIHALRAG 946

Query: 868 FSSSDDES 875
              SDDES
Sbjct: 947 I--SDDES 952

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	876
255549311	892	conserved hypothetical protein [Ricinus	0.923	0.906	0.478	0.0
302143198	499	unnamed protein product [Vitis vinifera]	0.566	0.993	0.667	0.0
297800674	782	predicted protein [Arabidopsis lyrata su	0.748	0.838	0.557	0.0
225461154	1004	PREDICTED: formin-like protein 5-like [V	0.547	0.478	0.682	0.0
147807336	910	hypothetical protein VITISV_009172 [Viti	0.553	0.532	0.679	0.0
322510126	785	RecName: Full=Formin-like protein 3; Sho	0.765	0.854	0.535	0.0
233142116	785	formin 3 [Arabidopsis thaliana]	0.765	0.854	0.533	0.0
224117388	983	predicted protein [Populus trichocarpa]	0.542	0.483	0.665	0.0
255563641	965	actin binding protein, putative [Ricinus	0.553	0.502	0.643	1e-177
449468434	984	PREDICTED: uncharacterized protein LOC10	0.537	0.478	0.674	1e-176

>gi|255549311|ref|XP_002515709.1| conserved hypothetical protein [Ricinus communis] gi|223545146|gb|EEF46656.1| conserved hypothetical protein [Ricinus communis]

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/941 (47%), Positives = 584/941 (62%), Gaps = 132/941 (14%)

Query: 1   MEMKSSGYGIVLVILICALATANITECRKRVPLTFDDG--------------DGGAGDDL 46
           ME++ + Y   L+IL+C LAT  I   RK   + F++                G    +L
Sbjct: 1   MELRKAAYW--LMILLCTLATERIQGMRKG-EMLFENCSPQIIKQILSGCLEQGQLPSNL 57

Query: 47  VIDDKMVEQTFVHCRNQLVG------GEGTAELKSMLLTTRRIS--EAINDLPPQTKETF 98
             D+++    ++HC  +L        G     L+ +   ++ I   E I+ LP   K+ F
Sbjct: 58  ANDEELA---WIHCSKELTDKKDCFIGFDFCLLQHISTKSKSICIHEVISVLPSHLKQEF 114

Query: 99  LDCLKKSLHFHVSSEEAS--FTHWSIEYAQLLVSWLNAPRRYLAAELFAERSTKRASLPP 156
           L+CL+K + +  SS + +  F  + I+  Q  + W ++PRRYL  +           + P
Sbjct: 115 LNCLRKEILYSGSSVQGASPFDRF-IKCFQWPLHWSSSPRRYLIGD-------SHPHIKP 166

Query: 157 VSDSIALPPISVSIATPAPSRQRKGAPASSPSPKPRFHS-----PPTSP----------- 200
           V               P+PS   K A A++P   P   S     PPT P           
Sbjct: 167 V---------------PSPSLASKRA-AATPEYDPALASFLSLIPPTHPLFQKKLGEHQQ 210

Query: 201 ---NKRPSPSPQPTAKKKAPPAVIVKNQPEKDQDDDVRH---KEIIIAVVATAVTTFALV 254
              +K P P P   A  K  P    K+   K +    R+    E+ IAVVATA+ TF  V
Sbjct: 211 QHTDKSP-PVPSSHANHKHSPP---KSHAHKLKKPHTRYGIRNEVFIAVVATAIATFCFV 266

Query: 255 ALLFLCCL--KSRSKRIDPVKGQNDDRPLLNSSLSAGMHLSSSVLLLAPYIFLFGSKTY- 311
           A LF C L  + R+ RI     Q DDRPLL        HLS      +     FG+  Y 
Sbjct: 267 AALFCCWLYFRGRNNRIGSRDRQRDDRPLL--------HLSDFSTSSSQNSSGFGNSIYK 318

Query: 312 NFTSWNLSFRFLTAPHSGSSMT-----EAQSSNEPPTLAAPPPPPPPPGPP--------- 357
           +F+S            SG +M+       ++ N  P L   P       PP         
Sbjct: 319 DFSS-----------SSGKTMSLKSNMSMKNGNHGPLLVEAPSSNGEVFPPLKLPPGRPA 367

Query: 358 --------PPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHRQARSISSEGNEVEGE 409
                   PPPPP    PP P     PP  P     KPSP  PHR+  S S++ ++ + E
Sbjct: 368 PPPPQPPAPPPPPAPRPPPPPKAARPPPAPPPKAKAKPSPPVPHRRGLSDSAKTDD-DSE 426

Query: 410 SGAAKTKLKPFFWDKVLASPDHAMVWHEISSGSFQFNEEMIESLFGYKPATKSRNECGKS 469
           SG+ K KLKPFFWDKV+ASPDH+MVWHEISSGSFQFNEEMIESLFGY      +N+  + 
Sbjct: 427 SGSTKAKLKPFFWDKVMASPDHSMVWHEISSGSFQFNEEMIESLFGYNATANGKNDRRRD 486

Query: 470 NSVSSESSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDALEEGNELPLELLQTLLKMAP 529
              S+E S QYIQIIDTRKAQNLSI+LRALN+T+EEV+DAL EG ELP ELLQTLLKMAP
Sbjct: 487 ---SAEPSFQYIQIIDTRKAQNLSILLRALNVTTEEVLDALREGTELPAELLQTLLKMAP 543

Query: 530 TTDEELKLRLFPGDISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKT 589
           T++EELKLRLF GDISQLGPAERFLK LV++PFAFKR+ESL+FM S QE++S++K+S  T
Sbjct: 544 TSEEELKLRLFTGDISQLGPAERFLKILVELPFAFKRMESLLFMSSLQEELSTLKESLAT 603

Query: 590 LEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTL 649
           LEVA DKLR+SRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKL+DVKGTDGKTTL
Sbjct: 604 LEVASDKLRNSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLSDVKGTDGKTTL 663

Query: 650 LHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLS 709
           LHFVVQEIIRSEGIRAVR AR S   S  S+KS++ ++D+S ++ E Y  LGL+++SGLS
Sbjct: 664 LHFVVQEIIRSEGIRAVRAARTSQ--SHCSVKSDDSIDDTSQEAVEHYRNLGLKMISGLS 721

Query: 710 TELEDVKKAAVIDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAE 769
           TELEDV+KAA IDAD ++++VSKL+ S+ + KAFLD+++K+ ++ ++FY  +  F++RA+
Sbjct: 722 TELEDVRKAAAIDADILSSSVSKLTQSMIRAKAFLDSDLKSLEQDSKFYQALASFVDRAD 781

Query: 770 TDIAWLLEEEKRIMALVKSTADYFHGNSGKDEGLRLFTIVRDFLIMLDKSCKQVK--ITT 827
           ++++W+ EEEKRIM LV+STADYFHGN+GK+EGLRLFT+VRDFLIM+DK+CK V+     
Sbjct: 782 SEVSWISEEEKRIMTLVQSTADYFHGNAGKNEGLRLFTVVRDFLIMVDKACKDVRDDRAA 841

Query: 828 KPSRTSRKETLTSSPSRENRQPSSDMRQKLFPAIEDRRMDF 868
           +P +TS+KE   SS S +NRQ S + RQ+LFPAI  RR+D+
Sbjct: 842 RPKKTSKKEAPESSASLDNRQNSDNRRQQLFPAIAGRRIDY 882

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143198|emb|CBI20493.3| unnamed protein product [Vitis vinifera]

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/505 (66%), Positives = 406/505 (80%), Gaps = 9/505 (1%)

Query: 373 VPAPPPKPM-TGVQKPSPLGPHRQARSISSEGNEVEGESGAAKTKLKPFFWDKVLASPDH 431
           +P  PP+P+ TG++   P      A +  SEG     E+ A KTKLKPFFWDKVLA+PDH
Sbjct: 1   MPPRPPQPIGTGLKASQP---STSAPNAPSEGGVSGSEADAPKTKLKPFFWDKVLANPDH 57

Query: 432 AMVWHEISSGSFQFNEEMIESLFGYKPATKSRNECGKSNSVSSESSAQYIQIIDTRKAQN 491
           +MVWH+I SGSFQF+EEMIE+LFGY P  K  N+  +  S + +SS+QYIQ+ID++K+QN
Sbjct: 58  SMVWHQIKSGSFQFSEEMIETLFGYAPPEK--NKTVRKESSAQDSSSQYIQLIDSKKSQN 115

Query: 492 LSIILRALNLTSEEVVDALEEGNELPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAE 551
           L+I+LRALN+T+EE  DA++EGNELP+ELLQTLLKMAPT +EELKLRLF G++SQLGPAE
Sbjct: 116 LAILLRALNVTTEEFCDAIQEGNELPVELLQTLLKMAPTAEEELKLRLFSGNLSQLGPAE 175

Query: 552 RFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVL 611
           RFLK LVDIPFAFKR+ESL+FMGS QED+S +K+SF TLE AC +L+SSRLFLKLLEAVL
Sbjct: 176 RFLKVLVDIPFAFKRLESLLFMGSLQEDISMLKESFATLEAACKELKSSRLFLKLLEAVL 235

Query: 612 KTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIRAVRTARA 671
           KTGNRMNDGT+RGGAQAFKLDTLLKLADVKG DGKTTLLHFVV EIIRSEG+RAVR AR 
Sbjct: 236 KTGNRMNDGTFRGGAQAFKLDTLLKLADVKGVDGKTTLLHFVVLEIIRSEGVRAVRAARE 295

Query: 672 SHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELEDVKKAAVIDADSVTATVS 731
           S S S  S+KS++ +ED S  S E Y  LGLQVVSGLS ELE+V+KA+V+D D +  TV+
Sbjct: 296 SRSLS--SIKSDDLLEDPSQDSEEHYRSLGLQVVSGLSDELENVRKASVLDTDGLKETVA 353

Query: 732 KLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTAD 791
           K+   L KT+ FL+++M+N D K  F   +  F++ AE DI WLLEEEKRI ALVKST D
Sbjct: 354 KVGNELLKTRNFLNSDMRNIDNKNGFCQTLESFVQHAEVDITWLLEEEKRITALVKSTID 413

Query: 792 YFHGNSGKDEGLRLFTIVRDFLIMLDKSCKQVKITTKPSRTSRKETLTSSPSRENRQPSS 851
           YFHGN+GKDEGLRLF IVRDFLIMLDK+CKQV+   K  R  +KE  T+ PS + RQP+S
Sbjct: 414 YFHGNAGKDEGLRLFVIVRDFLIMLDKACKQVRDAPKKPRPQKKEVPTAQPSSDTRQPAS 473

Query: 852 -DMRQKLFPAIEDRRMDFSSSDDES 875
            D+RQKLFPAI DRRMD+SSSD+ES
Sbjct: 474 PDIRQKLFPAIVDRRMDYSSSDEES 498

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800674|ref|XP_002868221.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297314057|gb|EFH44480.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/709 (55%), Positives = 499/709 (70%), Gaps = 53/709 (7%)

Query: 184 ASSPSPKPRFH---SPPTSPNKRPS-----PSPQPTAKKKAPPAVIVKNQP-------EK 228
           A  P+P PR +   +P +SPN+ P+      SP P+ +K   P+V+  +Q         +
Sbjct: 86  APGPAPNPRSYDLVAPASSPNEPPAETPDESSPGPSEEK---PSVVAPSQSVPGPPPPPR 142

Query: 229 DQDDDVRHKEIIIAVVATAVTTFALVALLFLCCLK-SRSKRIDPVKGQNDDRPLLNSSLS 287
           ++ DDV  K +IIAV +TAV TF LVAL+FLCC K +R+  + P  G  D+ PLL   LS
Sbjct: 143 EKKDDVLMK-LIIAVASTAVLTFVLVALMFLCCFKRNRNNAVGPRDGPRDEGPLLR--LS 199

Query: 288 AGMHLSS-SVLLLAPYIF-LFGSKTYNFTSWNLSFRFLTAPHSGSSMTEAQSSNEPPTLA 345
            G   +S +V   +  +F    SK  +F S  +SF+      +G   + A+SS+     A
Sbjct: 200 TGSTENSPTVASTSRKMFSATSSKKRSFLS-RVSFK-----RNGHEFSTAESSS-----A 248

Query: 346 APPPPPPPPG--------PPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHRQAR 397
             PP   PPG         P PPP P P PP  P+ P PP         P  + P RQ  
Sbjct: 249 GLPPLKLPPGRSAAPPPPAPAPPPQPPPPPPPKPQPPPPPKIARPPPAPPKGVAPKRQGH 308

Query: 398 SISSEGNEVEGESGAAKTKLKPFFWDKVLASPDHAMVWHEISSGSFQFNEEMIESLFGYK 457
           + S + ++V+ E+GA KTKLKPFFWDK +A+PD  MVWHEIS+GSFQFNEE +E+LFGY 
Sbjct: 309 TSSGDASDVDSETGAPKTKLKPFFWDK-MANPDQKMVWHEISAGSFQFNEEAMETLFGYN 367

Query: 458 PATKSRNECGKSNSVSSESSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDALEEGNELP 517
              K++N    ++S S ES  QYIQIIDTRKAQNLSI+LRALN+T+EEVVDA++EGNELP
Sbjct: 368 DGNKNKNGQRSTDSSSRESPVQYIQIIDTRKAQNLSILLRALNVTTEEVVDAIKEGNELP 427

Query: 518 LELLQTLLKMAPTTDEELKLRLFPGDISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQ 577
           +ELLQTLLKMAPT++EELKLRL+ GD+  LGPAERFLK LVDIPFAFKRIESL+FM S Q
Sbjct: 428 VELLQTLLKMAPTSEEELKLRLYSGDLHLLGPAERFLKILVDIPFAFKRIESLLFMISLQ 487

Query: 578 EDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKL 637
           E++S +K++  TLEVAC KLR+SRLFLKLLEAVLKTGNRMN GT+RG AQAFKLDTLLKL
Sbjct: 488 EEVSGLKEALATLEVACKKLRNSRLFLKLLEAVLKTGNRMNVGTFRGDAQAFKLDTLLKL 547

Query: 638 ADVKGTDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKY 697
           +DVKGTDGKTTLLHFVV EIIRSEG+RA+R      S S +S+K+++ V DSSPQS E+Y
Sbjct: 548 SDVKGTDGKTTLLHFVVLEIIRSEGVRALRL----QSRSFSSVKTDDSVADSSPQSVERY 603

Query: 698 SILGLQVVSGLSTELEDVKKAAVIDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEF 757
              GLQVV+GL+TELEDVK+AA+IDAD + AT++ LS SLT  + FL    K  DE+++F
Sbjct: 604 RSTGLQVVTGLTTELEDVKRAAIIDADGLAATLANLSGSLTNAREFL----KTMDEESDF 659

Query: 758 YNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEGLRLFTIVRDFLIMLD 817
              +  F+ERA+ DI WL EEE+RIM LVKS+ADYFHG S K+EGLRLF IVRDFLIML+
Sbjct: 660 ERALAGFIERADADIKWLKEEEERIMVLVKSSADYFHGKSAKNEGLRLFAIVRDFLIMLE 719

Query: 818 KSCKQVKITTKPSRTSRKETLTSSPSRENRQPSSDMRQKLFPAIEDRRM 866
           K C++VK TTK    S K+  T + S ++ QPS D+RQ+LFPAI +RR+
Sbjct: 720 KVCREVKETTKTKNHSGKKE-TDTMSSDSNQPSPDIRQRLFPAIAERRI 767

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461154|ref|XP_002280117.1| PREDICTED: formin-like protein 5-like [Vitis vinifera]

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/485 (68%), Positives = 395/485 (81%), Gaps = 5/485 (1%)

Query: 392  PHRQARSISSEGNEVEGESGAAKTKLKPFFWDKVLASPDHAMVWHEISSGSFQFNEEMIE 451
            P   A +  SEG     E+ A KTKLKPFFWDKVLA+PDH+MVWH+I SGSFQF+EEMIE
Sbjct: 523  PSTSAPNAPSEGGVSGSEADAPKTKLKPFFWDKVLANPDHSMVWHQIKSGSFQFSEEMIE 582

Query: 452  SLFGYKPATKSRNECGKSNSVSSESSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDALE 511
            +LFGY P  K  N+  +  S + +SS+QYIQ+ID++K+QNL+I+LRALN+T+EE  DA++
Sbjct: 583  TLFGYAPPEK--NKTVRKESSAQDSSSQYIQLIDSKKSQNLAILLRALNVTTEEFCDAIQ 640

Query: 512  EGNELPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAERFLKTLVDIPFAFKRIESLI 571
            EGNELP+ELLQTLLKMAPT +EELKLRLF G++SQLGPAERFLK LVDIPFAFKR+ESL+
Sbjct: 641  EGNELPVELLQTLLKMAPTAEEELKLRLFSGNLSQLGPAERFLKVLVDIPFAFKRLESLL 700

Query: 572  FMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKL 631
            FMGS QED+S +K+SF TLE AC +L+SSRLFLKLLEAVLKTGNRMNDGT+RGGAQAFKL
Sbjct: 701  FMGSLQEDISMLKESFATLEAACKELKSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKL 760

Query: 632  DTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSP 691
            DTLLKLADVKG DGKTTLLHFVV EIIRSEG+RAVR AR S S S  S+KS++ +ED S 
Sbjct: 761  DTLLKLADVKGVDGKTTLLHFVVLEIIRSEGVRAVRAARESRSLS--SIKSDDLLEDPSQ 818

Query: 692  QSAEKYSILGLQVVSGLSTELEDVKKAAVIDADSVTATVSKLSTSLTKTKAFLDTEMKNK 751
             S E Y  LGLQVVSGLS ELE+V+KA+V+D D +  TV+K+   L KT+ FL+++M+N 
Sbjct: 819  DSEEHYRSLGLQVVSGLSDELENVRKASVLDTDGLKETVAKVGNELLKTRNFLNSDMRNI 878

Query: 752  DEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEGLRLFTIVRD 811
            D K  F   +  F++ AE DI WLLEEEKRI ALVKST DYFHGN+GKDEGLRLF IVRD
Sbjct: 879  DNKNGFCQTLESFVQHAEVDITWLLEEEKRITALVKSTIDYFHGNAGKDEGLRLFVIVRD 938

Query: 812  FLIMLDKSCKQVKITTKPSRTSRKETLTSSPSRENRQPSS-DMRQKLFPAIEDRRMDFSS 870
            FLIMLDK+CKQV+   K  R  +KE  T+ PS + RQP+S D+RQKLFPAI DRRMD+SS
Sbjct: 939  FLIMLDKACKQVRDAPKKPRPQKKEVPTAQPSSDTRQPASPDIRQKLFPAIVDRRMDYSS 998

Query: 871  SDDES 875
            SD+ES
Sbjct: 999  SDEES 1003

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147807336|emb|CAN77532.1| hypothetical protein VITISV_009172 [Vitis vinifera]

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/493 (67%), Positives = 390/493 (79%), Gaps = 8/493 (1%)

Query: 377 PPKPMTGVQKPSPLGPHRQARSISSEGNEVEGESGAAKTKLKPFFWDKVLASPDHAMVWH 436
           PPK      K  PLGPH +  + S EG++V GES A KTKLKPFFWDKVLASPD +MVWH
Sbjct: 410 PPKSSAANSKLPPLGPHHRKNTASGEGDDVAGESDAPKTKLKPFFWDKVLASPDESMVWH 469

Query: 437 EISSGSFQFNEEMIESLFGYKPATKSRNECGKSNSVSSESSAQYIQIIDTRKAQNLSIIL 496
           E+S+GSFQFNEEMIESLFGY    K++N+  K    S+ S  QYIQII+ +KAQNLSI+L
Sbjct: 470 ELSAGSFQFNEEMIESLFGYTNVEKNKNDSKKE---SASSEPQYIQIINPKKAQNLSILL 526

Query: 497 RALNLTSEEVVDALEEGNELPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAERFLKT 556
           RALN+T+EEV DAL+EGNELP ELLQTLLKMAPT DEELKLRLF G+ SQLGPAERFLK 
Sbjct: 527 RALNVTTEEVYDALKEGNELPAELLQTLLKMAPTPDEELKLRLFSGNTSQLGPAERFLKV 586

Query: 557 LVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNR 616
           LV+IPFAFKR+E+L+FM S QE++S IK+SF  LEVAC +LR+SRLFLKLLEAVLKTGNR
Sbjct: 587 LVEIPFAFKRMEALLFMSSLQEEVSGIKESFAALEVACKELRNSRLFLKLLEAVLKTGNR 646

Query: 617 MNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTS 676
           MNDGT+RGGAQAFKLDTLLKL+DVKG DGKTTLLHFVV EIIRSEGIRA R AR S S S
Sbjct: 647 MNDGTFRGGAQAFKLDTLLKLSDVKGIDGKTTLLHFVVLEIIRSEGIRAARAARESKSFS 706

Query: 677 SASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELEDVKKAAVIDADSVTATVSKLSTS 736
             SLKS++  ED S ++ E +  LGLQVVSGLS ELE+VKKAA+IDADS+T+TVS L  S
Sbjct: 707 --SLKSDDLTEDPSNET-EHFRTLGLQVVSGLSNELENVKKAAIIDADSLTSTVSNLGHS 763

Query: 737 LTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGN 796
           L KT+ FL  +M N  E+++F+  +  F+ERAE DI W+LEEE RIM LV+ST DYFHG+
Sbjct: 764 LLKTRDFLRKDMSNLQEESDFHRSLASFVERAEVDITWMLEEENRIMTLVRSTVDYFHGH 823

Query: 797 SGKDEGLRLFTIVRDFLIMLDKSCKQV-KITTKPSRTSRKETLTSSPSRENRQPS-SDMR 854
           SGKDEGLRLF IVRDFL +LDK C +V K T KP++  + E  T S   E  Q S  DMR
Sbjct: 824 SGKDEGLRLFAIVRDFLKILDKVCNEVRKSTIKPTKNPKTEAPTVSAPPEVHQSSLQDMR 883

Query: 855 QKLFPAIEDRRMD 867
           QKLFP I +RRMD
Sbjct: 884 QKLFPVIAERRMD 896

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|322510126|sp|O23373.3|FH3_ARATH RecName: Full=Formin-like protein 3; Short=AtFH3; Short=AtFORMIN-3; Flags: Precursor

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/721 (53%), Positives = 490/721 (67%), Gaps = 50/721 (6%)

Query: 173 PAPSRQRKGAPASSPSPKPR-----FHSPPTSPNKRPSPSPQPTAKK--KAPPAVIVKNQ 225
           PAPS      P+ +P P P      + +P +SPN+ P+ +P  ++    +  P+V+  +Q
Sbjct: 73  PAPSFAPGPGPSFAPGPAPNPRSYDWLAPASSPNEPPAETPDESSPSPSEETPSVVAPSQ 132

Query: 226 P---------EKDQDDDVRHKEIIIAVVATAVTTFALVALLFLCCLKSRSKR-IDPVKGQ 275
                     ++++ DD+  K +IIAV +TAV TF  VAL+FLCC K      +    G 
Sbjct: 133 SVPGPPRPPPQREKKDDILMK-LIIAVASTAVLTFVFVALMFLCCFKRNCNNAVGSRDGP 191

Query: 276 NDDRPLLNSSLSAGMHLSS-SVLLLAPYIF-LFGSKTYNFTSWNLSFRFLTAPHSGSSMT 333
            D+ PLL   LS G   +S +V   +  +F +  SK  +F S       ++   +G   +
Sbjct: 192 RDEGPLLR--LSTGSTENSPTVASTSRKMFSVASSKKRSFLSR------VSLKRNGHEFS 243

Query: 334 EAQSSNEPPTLAAPPPPPPPPG--------PPPPPPPPRPRPPAPPKVPAPPPKPMTGVQ 385
            A+SS    + A  PP   PPG           PPP P P PP  P+ P PP        
Sbjct: 244 TAESS----SAAGLPPLKLPPGRSAPPPPPAAAPPPQPPPPPPPKPQPPPPPKIARPPPA 299

Query: 386 KPSPLGPHRQARSISSEGNEVEGESGAAKTKLKPFFWDKVLASPDHAMVWHEISSGSFQF 445
            P    P RQ  + S + ++V+ E+GA KTKLKPFFWDK +A+PD  MVWHEIS+GSFQF
Sbjct: 300 PPKGAAPKRQGNTSSGDASDVDSETGAPKTKLKPFFWDK-MANPDQKMVWHEISAGSFQF 358

Query: 446 NEEMIESLFGYKPATKSRNECGKSNSVSSESSAQYIQIIDTRKAQNLSIILRALNLTSEE 505
           NEE +ESLFGY    K++N    ++S   ES  QYIQIIDTRKAQNLSI+LRALN+T+EE
Sbjct: 359 NEEAMESLFGYNDGNKNKNGQKSTDSSLRESPLQYIQIIDTRKAQNLSILLRALNVTTEE 418

Query: 506 VVDALEEGNELPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAERFLKTLVDIPFAFK 565
           VVDA++EGNELP+ELLQTLLKMAPT++EELKLRL+ GD+  LGPAERFLK LVDIPFAFK
Sbjct: 419 VVDAIKEGNELPVELLQTLLKMAPTSEEELKLRLYSGDLHLLGPAERFLKILVDIPFAFK 478

Query: 566 RIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGG 625
           RIESL+FM S QE++S +K++  TLEVAC KLR+SRLFLKLLEAVLKTGNRMN GT+RG 
Sbjct: 479 RIESLLFMISLQEEVSGLKEALGTLEVACKKLRNSRLFLKLLEAVLKTGNRMNVGTFRGD 538

Query: 626 AQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEF 685
           AQAFKLDTLLKL+DVKGTDGKTTLLHFVV EIIRSEG+RA+R      S S +S+K+++ 
Sbjct: 539 AQAFKLDTLLKLSDVKGTDGKTTLLHFVVLEIIRSEGVRALRL----QSRSFSSVKTDDS 594

Query: 686 VEDSSPQSAEKYSILGLQVVSGLSTELEDVKKAAVIDADSVTATVSKLSTSLTKTKAFLD 745
             DSSPQS E+Y   GLQVV+GL+TELEDVK+AA+IDAD + AT++ +S SLT  + FL 
Sbjct: 595 NADSSPQSVERYRSTGLQVVTGLTTELEDVKRAAIIDADGLAATLANISGSLTNAREFL- 653

Query: 746 TEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEGLRL 805
              K  DE+++F   +  F+ERA+ D  WL EEE+RIM LVKS+ADYFHG S K+EGLRL
Sbjct: 654 ---KTMDEESDFERALAGFIERADADFKWLKEEEERIMVLVKSSADYFHGKSAKNEGLRL 710

Query: 806 FTIVRDFLIMLDKSCKQVKITTKPSRTSRKETLTSSPSRENRQPSSDMRQKLFPAIEDRR 865
           F IVRDFLIML+K C++VK TTK +  S K+    + S  N QPS D RQ+LFPAI +RR
Sbjct: 711 FAIVRDFLIMLEKVCREVKETTKTTNHSGKKESEMTTSDSN-QPSPDFRQRLFPAIAERR 769

Query: 866 M 866
           M
Sbjct: 770 M 770

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|233142116|gb|ACQ91096.1| formin 3 [Arabidopsis thaliana]

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/721 (53%), Positives = 489/721 (67%), Gaps = 50/721 (6%)

Query: 173 PAPSRQRKGAPASSPSPKPR-----FHSPPTSPNKRPSPSPQPTAKK--KAPPAVIVKNQ 225
           PAPS      P+ +P P P      + +P +SPN+ P+ +P  ++    +  P+V+  +Q
Sbjct: 73  PAPSFAPGPGPSFAPGPAPNPRSYDWLAPASSPNEPPAETPDESSPSPSEETPSVVAPSQ 132

Query: 226 P---------EKDQDDDVRHKEIIIAVVATAVTTFALVALLFLCCLKSRSKR-IDPVKGQ 275
                     ++++ DD+  K +IIAV +TAV TF  V L+FLCC K      +    G 
Sbjct: 133 SVPGPPRPPPQREKKDDILMK-LIIAVASTAVLTFVFVTLMFLCCFKRNCNNAVGSRDGP 191

Query: 276 NDDRPLLNSSLSAGMHLSS-SVLLLAPYIF-LFGSKTYNFTSWNLSFRFLTAPHSGSSMT 333
            D+ PLL   LS G   +S +V   +  +F +  SK  +F S       ++   +G   +
Sbjct: 192 RDEGPLLR--LSTGSTENSPTVASTSRKMFSVASSKKRSFLSR------VSLKRNGHEFS 243

Query: 334 EAQSSNEPPTLAAPPPPPPPPG--------PPPPPPPPRPRPPAPPKVPAPPPKPMTGVQ 385
            A+SS    + A  PP   PPG           PPP P P PP  P+ P PP        
Sbjct: 244 TAESS----SAAGLPPLKLPPGRSAPPPPPAAAPPPQPPPPPPPKPQPPPPPKIARPPPA 299

Query: 386 KPSPLGPHRQARSISSEGNEVEGESGAAKTKLKPFFWDKVLASPDHAMVWHEISSGSFQF 445
            P    P RQ  + S + ++V+ E+GA KTKLKPFFWDK +A+PD  MVWHEIS+GSFQF
Sbjct: 300 PPKGAAPKRQGNTSSGDASDVDSETGAPKTKLKPFFWDK-MANPDQKMVWHEISAGSFQF 358

Query: 446 NEEMIESLFGYKPATKSRNECGKSNSVSSESSAQYIQIIDTRKAQNLSIILRALNLTSEE 505
           NEE +ESLFGY    K++N    ++S   ES  QYIQIIDTRKAQNLSI+LRALN+T+EE
Sbjct: 359 NEEAMESLFGYNDGNKNKNGQKSTDSSLRESPLQYIQIIDTRKAQNLSILLRALNVTTEE 418

Query: 506 VVDALEEGNELPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAERFLKTLVDIPFAFK 565
           VVDA++EGNELP+ELLQTLLKMAPT++EELKLRL+ GD+  LGPAERFLK LVDIPFAFK
Sbjct: 419 VVDAIKEGNELPVELLQTLLKMAPTSEEELKLRLYSGDLHLLGPAERFLKILVDIPFAFK 478

Query: 566 RIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGG 625
           RIESL+FM S QE++S +K++  TLEVAC KLR+SRLFLKLLEAVLKTGNRMN GT+RG 
Sbjct: 479 RIESLLFMISLQEEVSGLKEALGTLEVACKKLRNSRLFLKLLEAVLKTGNRMNVGTFRGD 538

Query: 626 AQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEF 685
           AQAFKLDTLLKL+DVKGTDGKTTLLHFVV EIIRSEG+RA+R      S S +S+K+++ 
Sbjct: 539 AQAFKLDTLLKLSDVKGTDGKTTLLHFVVLEIIRSEGVRALRL----QSRSFSSVKTDDS 594

Query: 686 VEDSSPQSAEKYSILGLQVVSGLSTELEDVKKAAVIDADSVTATVSKLSTSLTKTKAFLD 745
             DSSPQS E+Y   GLQVV+GL+TELEDVK+AA+IDAD + AT++ +S SLT  + FL 
Sbjct: 595 NADSSPQSVERYRSTGLQVVTGLTTELEDVKRAAIIDADGLAATLANISGSLTNAREFL- 653

Query: 746 TEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEGLRL 805
              K  DE+++F   +  F+ERA+ D  WL EEE+RIM LVKS+ADYFHG S K+EGLRL
Sbjct: 654 ---KTMDEESDFERALAGFIERADADFKWLKEEEERIMVLVKSSADYFHGKSAKNEGLRL 710

Query: 806 FTIVRDFLIMLDKSCKQVKITTKPSRTSRKETLTSSPSRENRQPSSDMRQKLFPAIEDRR 865
           F IVRDFLIML+K C++VK TTK +  S K+    + S  N QPS D RQ+LFPAI +RR
Sbjct: 711 FAIVRDFLIMLEKVCREVKETTKTTNHSGKKESEMTTSDSN-QPSPDFRQRLFPAIAERR 769

Query: 866 M 866
           M
Sbjct: 770 M 770

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117388|ref|XP_002317562.1| predicted protein [Populus trichocarpa] gi|222860627|gb|EEE98174.1| predicted protein [Populus trichocarpa]

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/481 (66%), Positives = 395/481 (82%), Gaps = 6/481 (1%)

Query: 390 LGPHRQARSISSEGNEV--EGESGAAKTKLKPFFWDKVLASPDHAMVWHEISSGSFQFNE 447
           LG  R + S SSEG  +  + ++ A KTKLKPFFWDKVLA+PDH+MVWH+I SGSFQFNE
Sbjct: 494 LGSKRPSNSASSEGAGLGDDADADAPKTKLKPFFWDKVLANPDHSMVWHQIKSGSFQFNE 553

Query: 448 EMIESLFGYKPATKSRNECGKSNSVSSESSAQYIQIIDTRKAQNLSIILRALNLTSEEVV 507
           EMIE+LFGY P  K++NE  K +S S + S QYIQI+D +KAQNLSI+LRALN+T EEV 
Sbjct: 554 EMIETLFGYAP-DKNKNEHKKESS-SQDPSPQYIQILDPKKAQNLSILLRALNVTIEEVC 611

Query: 508 DALEEGNELPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAERFLKTLVDIPFAFKRI 567
           DAL EGNELP+ELLQ LL+MAPT DEELKLRL+ G++SQLGPAERFLK LVDIPFAFKR+
Sbjct: 612 DALREGNELPVELLQNLLRMAPTADEELKLRLYSGELSQLGPAERFLKALVDIPFAFKRL 671

Query: 568 ESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQ 627
           E+L+FM   QE++++ K+SF+TLEVAC +LR+SRLFLKLLEAVLKTGNRMNDGT+RGGAQ
Sbjct: 672 EALLFMCILQEEVATTKESFETLEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQ 731

Query: 628 AFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVE 687
           AFKLDTLLKL+DVKG DGKTTLLHFVVQEIIRSEG+RA R  R S S SS S+K+++ +E
Sbjct: 732 AFKLDTLLKLSDVKGIDGKTTLLHFVVQEIIRSEGVRAARAGRESRSISSVSVKTDDLLE 791

Query: 688 DSSPQSAEKYSILGLQVVSGLSTELEDVKKAAVIDADSVTATVSKLSTSLTKTKAFLDTE 747
           D SP + + YS LGLQVVS LS+ELE+VK+AAV+DADS+T +V+KL  S+  T+ FL+ +
Sbjct: 792 DISPDTEDNYSSLGLQVVSQLSSELENVKRAAVVDADSLTGSVAKLGQSVVVTRNFLNKD 851

Query: 748 MKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEGLRLFT 807
           MKN +E + F+  +  F++ AE DI  LLEEEKRI+ALVKST DYF+GN+GKDEGLRLF 
Sbjct: 852 MKNLEENSGFHETLKSFVQNAEVDIMSLLEEEKRIVALVKSTGDYFYGNAGKDEGLRLFI 911

Query: 808 IVRDFLIMLDKSCKQVKITTKPSRTSRKE--TLTSSPSRENRQPSSDMRQKLFPAIEDRR 865
           +VRDFLI+LDK CK+V    K S  +RK+  +  SSPS +++QPS D+RQ+LFPAI +RR
Sbjct: 912 VVRDFLIILDKVCKEVGEAQKRSAKTRKKEASTASSPSHKHQQPSPDIRQRLFPAIAERR 971

Query: 866 M 866
           M
Sbjct: 972 M 972

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563641|ref|XP_002522822.1| actin binding protein, putative [Ricinus communis] gi|223537906|gb|EEF39520.1| actin binding protein, putative [Ricinus communis]

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 325/505 (64%), Positives = 394/505 (78%), Gaps = 20/505 (3%)

Query: 373 VPAPPPKPMTGVQKPSPLGPHRQARSISSEGNEVEGESGAAKTKLKPFFWDKVLASPDHA 432
           V A  P+P TG + PS                  +G++   K KLKPFFWDKV+A+P+H+
Sbjct: 479 VGAKVPRPPTGSKLPSG----------------GDGDANTPKAKLKPFFWDKVMANPEHS 522

Query: 433 MVWHEISSGSFQFNEEMIESLFGYKPATKSRNECGKSNSVSSESSAQYIQIIDTRKAQNL 492
           MVWH+I SGSFQFNEEMIE+LFGY    +++NE GK  S S E S QYIQI+DT+KAQNL
Sbjct: 523 MVWHQIKSGSFQFNEEMIETLFGYAAVDRNKNE-GKKESSSQEPSTQYIQILDTKKAQNL 581

Query: 493 SIILRALNLTSEEVVDALEEGNELPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAER 552
           SI+LRALN+T EEV DAL EGNELP+ELLQTLLKMAPT DEELKLR+F G++SQLGPAER
Sbjct: 582 SILLRALNVTIEEVCDALREGNELPVELLQTLLKMAPTADEELKLRVFSGELSQLGPAER 641

Query: 553 FLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLK 612
           FLK LV+IPFA+KR+E+L+FM + QE++++ K+SF+TLEVAC +LRSSRLFLKLLEAVLK
Sbjct: 642 FLKALVEIPFAYKRLEALLFMCTLQEEVTTTKESFETLEVACKELRSSRLFLKLLEAVLK 701

Query: 613 TGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIRAVRTARAS 672
           TGNRMNDGT+RGGAQAFKLDTLLKLADVKG DGKTTLLHFVVQEIIRSEG+RA R A+ S
Sbjct: 702 TGNRMNDGTFRGGAQAFKLDTLLKLADVKGADGKTTLLHFVVQEIIRSEGVRAARAAKES 761

Query: 673 HSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELEDVKKAAVIDADSVTATVSK 732
            + S+ S+ +E+ +ED SP + E Y  LGLQVVS LS+ELE+VKKAA +DADS+  TV+K
Sbjct: 762 RTFSNVSVTTEDLLEDISPDTEEDYRSLGLQVVSRLSSELENVKKAANVDADSLIGTVAK 821

Query: 733 LSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADY 792
           L  SL KTK FL+ +MK+ +  +EF+  +  F++ AE D+  LLEEEKRIMAL+KST DY
Sbjct: 822 LGHSLLKTKDFLNKDMKSLEGGSEFHETLKSFVQNAEVDVMLLLEEEKRIMALMKSTGDY 881

Query: 793 FHGNSGKDEGLRLFTIVRDFLIMLDKSCKQVKITTKPSRTS-RKETLTSSPSRENRQP-S 850
           FHG +GKDEGLRLF IVRDFLI+LDK CKQV    K S  S +KE+ T+S     RQ  S
Sbjct: 882 FHGKAGKDEGLRLFVIVRDFLIILDKVCKQVGEAQKKSAKSLKKESSTASSHSSPRQHLS 941

Query: 851 SDMRQKLFPAIEDRRMDFSSSDDES 875
            D R +LFPAI +RR + SSSDDES
Sbjct: 942 PDFRSRLFPAIAERREN-SSSDDES 965

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468434|ref|XP_004151926.1| PREDICTED: uncharacterized protein LOC101206094 [Cucumis sativus]

 Score =  626 bits (1615), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 328/486 (67%), Positives = 394/486 (81%), Gaps = 15/486 (3%)

Query: 386 KPSPLGPHRQARSISSEGNEVEGESGAAKTKLKPFFWDKVLASPDHAMVWHEISSGSFQF 445
           +P P+GPHR+  S    G+ ++ +SG+ KTKLKPFFWDKVLA+P  +MVWHEIS+GSFQF
Sbjct: 486 QPVPIGPHRRGPS----GSSMDADSGSQKTKLKPFFWDKVLANPGQSMVWHEISAGSFQF 541

Query: 446 NEEMIESLFGYKPATKSRNECGKSNSVSSESSAQYIQIIDTRKAQNLSIILRALNLTSEE 505
           NEEM+ESLFGY     ++ +  K +SVS + S QYIQIID +KAQNLSI+LRALN+T+ E
Sbjct: 542 NEEMMESLFGYTAVETNKGD-RKKDSVS-DPSLQYIQIIDAKKAQNLSILLRALNVTTTE 599

Query: 506 VVDALEEGN-ELPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAERFLKTLVDIPFAF 564
           V+DALEEGN +LP ELLQTLLKMAPTT+EELKLRLF G++SQLGPAERFLK LVD+PFAF
Sbjct: 600 VLDALEEGNPDLPAELLQTLLKMAPTTEEELKLRLFSGELSQLGPAERFLKVLVDVPFAF 659

Query: 565 KRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRG 624
           KR+E L+FM S  ED+++IK+SF TLEVA + LR+SRLFLKLLEAVLKTGNRMNDGTYRG
Sbjct: 660 KRLECLLFMLSMSEDVTNIKESFATLEVASNNLRNSRLFLKLLEAVLKTGNRMNDGTYRG 719

Query: 625 GAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEE 684
           GAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIRA R+ R S S+SS       
Sbjct: 720 GAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIRAARSDRQSRSSSSIVSNDTI 779

Query: 685 FVEDSSPQSAEKYSILGLQVVSGLSTELEDVKKAAVIDADSVTATVSKLSTSLTKTKAFL 744
           F ED +  S E Y  LGLQVVSGL+ ELE+VKKAA +DAD +T T+SKL  SL KTKAF+
Sbjct: 780 F-EDFADDSTEHYRQLGLQVVSGLTKELENVKKAAAVDADGLTTTISKLGQSLIKTKAFI 838

Query: 745 DTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEGLR 804
           D EMK+ DE ++F+  ++KFLE AE DIAW+  EEK+IMALVKST DYFHGNSGK+EGLR
Sbjct: 839 DAEMKSLDEDSKFHQSMSKFLEGAEADIAWIAVEEKKIMALVKSTVDYFHGNSGKEEGLR 898

Query: 805 LFTIVRDFLIMLDKSCKQVKITTKPSRT----SRKETLTSSPSRENRQPSSDMRQKLFPA 860
           LFTIVRDFLI+LDK+CKQVK   + +      ++KET T + +    Q +SD+RQ+LFPA
Sbjct: 899 LFTIVRDFLIVLDKTCKQVKEAAEAAAKQAKHTKKETATPTAA---CQQNSDLRQRLFPA 955

Query: 861 IEDRRM 866
           I +RR+
Sbjct: 956 IVERRI 961

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	876
TAIR|locus:2172129	900	Fh5 "formin homology5" [Arabid	0.523	0.51	0.573	5.9e-135
TAIR|locus:2158576	899	FH6 "formin homolog 6" [Arabid	0.283	0.275	0.492	4.6e-82
TAIR|locus:2079807	884	AT3G05470 [Arabidopsis thalian	0.463	0.459	0.418	6.6e-81
TAIR|locus:2094493	1051	AFH1 "formin homology 1" [Arab	0.495	0.412	0.398	1.2e-74
TAIR|locus:2043989	894	AT2G43800 [Arabidopsis thalian	0.478	0.468	0.414	6.5e-74
TAIR|locus:2020568	760	FH8 "formin 8" [Arabidopsis th	0.460	0.530	0.363	2.6e-65
TAIR|locus:2025981	929	AT1G59910 [Arabidopsis thalian	0.551	0.519	0.325	5.1e-65
TAIR|locus:2156248	782	AT5G48360 [Arabidopsis thalian	0.251	0.281	0.388	1e-45
TAIR|locus:2079711	841	AT3G07540 [Arabidopsis thalian	0.257	0.268	0.320	7.5e-36
UNIPROTKB|F1NBT1	1130	FHDC1 "Uncharacterized protein	0.277	0.215	0.271	5.1e-21

TAIR|locus:2172129 Fh5 "formin homology5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1271 (452.5 bits), Expect = 5.9e-135, Sum P(2) = 5.9e-135
 Identities = 268/467 (57%), Positives = 331/467 (70%)

Query:   412 AAKTKLKPFFWDKVLASPDHAMVWHEISSGSFQFNEEMIESLFGYKPATKSRNECGKSNS 471
             A KTKLKPFFWDKV A+P+H+MVW++I SGSFQFNEEMIESLFGY  A K++N+  K  S
Sbjct:   438 APKTKLKPFFWDKVQANPEHSMVWNDIRSGSFQFNEEMIESLFGYAAADKNKND--KKGS 495

Query:   472 VSSESSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDAXXXXXXXXXXXXXXXXKMAPTT 531
                 +  Q++QI++ +K QNLSI+LRALN T+EEV DA                KMAPT 
Sbjct:   496 SGQAALPQFVQILEPKKGQNLSILLRALNATTEEVCDALREGNELPVEFIQTLLKMAPTP 555

Query:   532 DEELKLRLFPGDISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLE 591
             +EELKLRL+ G+I+QLG AERFLK +VDIPFAFKR+E+L+FM +  E+M+ +K+SF+ LE
Sbjct:   556 EEELKLRLYCGEIAQLGSAERFLKAVVDIPFAFKRLEALLFMCTLHEEMAFVKESFQKLE 615

Query:   592 VACDXXXXXXXXXXXXEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLH 651
             VAC             EAVLKTGNRMNDGT+RGGAQAFKLDTLLKLADVKGTDGKTTLLH
Sbjct:   616 VACKELRGSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLADVKGTDGKTTLLH 675

Query:   652 FVVQEIIRSEGIXXXXXXXXXXXXXXXXLKSEEF-VEDSSPQSAEKYSILGLQVVSGLST 710
             FVVQEIIR+EG+                +K+E+  VE++S +S E Y  LGL+ VSGLS+
Sbjct:   676 FVVQEIIRTEGVRAARTIRESQSFSS--VKTEDLLVEETSEESEENYRNLGLEKVSGLSS 733

Query:   711 ELEDVKKAAVIDADXXXXXXXXXXXXXXXXXXFLDTEMKNKDEKTEFYNVVTKFLERAET 770
             ELE VKK+A IDAD                  F+++EMK+  E++ F   +  F++ AE 
Sbjct:   734 ELEHVKKSANIDADGLTGTVLKMGHALSKARDFVNSEMKSSGEESGFREALEDFIQNAEG 793

Query:   771 DIAWLLEEEKRIMALVKSTADYFHGNSGKDEGLRLFTIVRDFLIMLDKSCKQVKITT-KP 829
              I  +LEEEKRIMALVKST DYFHG +GKDEGLRLF IVRDFLI+LDKSCK+V+    +P
Sbjct:   794 SIMSILEEEKRIMALVKSTGDYFHGKAGKDEGLRLFVIVRDFLIILDKSCKEVREARGRP 853

Query:   830 SRTSRKETLTSSPSREN-RQ-PSSDMRQKLFPAIEDRRMDFSSSDDE 874
              R +RK+  T+S S E  RQ PS D RQKLFPAI +RR+D SSSD +
Sbjct:   854 VRMARKQGSTASASSETPRQTPSLDPRQKLFPAITERRVDQSSSDSD 900

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016043 "cellular component organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0005618 "cell wall" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0009960 "endosperm development" evidence=IMP

GO:0030041 "actin filament polymerization" evidence=IDA

GO:0045010 "actin nucleation" evidence=IDA

GO:0048317 "seed morphogenesis" evidence=IGI

TAIR|locus:2158576 FH6 "formin homolog 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 597 (215.2 bits), Expect = 4.6e-82, Sum P(3) = 4.6e-82
 Identities = 124/252 (49%), Positives = 165/252 (65%)

Query:   413 AKTKLKPFFWDKVLASPDHAMVWHEISSGSFQFNEEMIESLFGYKPATKSRNECGKSNSV 472
             +K KLKP  WDKV AS D A VW ++ S SFQ NE+ +E LFG    + +  E  + + +
Sbjct:   458 SKPKLKPLHWDKVRASSDRATVWDQLKSSSFQLNEDRMEHLFGCNSGSSAPKEPVRRSVI 517

Query:   473 SSESSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDAXXXXX--XXXXXXXXXXXKMAPT 530
                 +    +++D +K+QN++I+LRALN+T EEV +A                  KMAPT
Sbjct:   518 PLAENEN--RVLDPKKSQNIAILLRALNVTREEVSEALTDGNPESLGAELLETLVKMAPT 575

Query:   531 TDEELKLRLFPGDISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTL 590
              +EE+KLR + GD+S+LG AERFLKT++DIPFAFKR+E++++  +   ++  +++SF+TL
Sbjct:   576 KEEEIKLREYSGDVSKLGTAERFLKTILDIPFAFKRVEAMLYRANFDAEVKYLRNSFQTL 635

Query:   591 EVACDXXXXXXXXXXXXEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLL 650
             E A              EAVL TGNRMN GT RG A AFKLDTLLKL D+KG DGKTTLL
Sbjct:   636 EEASLELKASRLFLKLLEAVLMTGNRMNVGTNRGDAIAFKLDTLLKLVDIKGVDGKTTLL 695

Query:   651 HFVVQEIIRSEG 662
             HFVVQEI RSEG
Sbjct:   696 HFVVQEITRSEG 707

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0016043 "cellular component organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0005618 "cell wall" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2079807 AT3G05470 [Arabidopsis thaliana (taxid:3702)]

 Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
 Identities = 176/421 (41%), Positives = 249/421 (59%)

Query:   416 KLKPFFWDKVLASPDHAMVWHEISSGSFQFNEEMIESLFGYKPATKSRNECGKSNSVSSE 475
             KLKP  WDKV A+PD  MVW ++ + SF+ +EEMIESLFGY   + ++NE GKS + S  
Sbjct:   470 KLKPLHWDKVRATPDRTMVWDKLRTSSFELDEEMIESLFGYTMQSSTKNEEGKSKTPSPG 529

Query:   476 SSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDAXXXXXXXXXXXXXXXXKMAPTTDEEL 535
                    +++ ++ QN +I+L+ALN T++++  A                KM PT +EEL
Sbjct:   530 K-----HLLEPKRLQNFTILLKALNATADQICSALGKGEGLCLQQLEALVKMVPTKEEEL 584

Query:   536 KLRLFPGDISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACD 595
             KLR + G + +LG AE+FL+ LV +PFAF+R E++++  + ++++  +++SF  LE AC 
Sbjct:   585 KLRSYKGAVDELGSAEKFLRALVGVPFAFQRAEAMLYRETFEDEVVHLRNSFSMLEEACK 644

Query:   596 XXXXXXXXXXXXEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQ 655
                         EAVLKTGNRMN GT RGGA+AFKLD LLKL+DVKGTDGKTTLLHFVVQ
Sbjct:   645 ELKSSRLFLKLLEAVLKTGNRMNVGTIRGGAKAFKLDALLKLSDVKGTDGKTTLLHFVVQ 704

Query:   656 EIIRSEGIXXXXXXXXXXXXXXXXLKSEEFVEDSSPQSAEK-YSILGLQVVSGLSTELED 714
             EI RSEGI                + ++   ++ +P+  E+ Y  +GL +VSGL+TEL +
Sbjct:   705 EISRSEGIRVSDSIMGR-------IMNQRSNKNRTPEEKEEDYRRMGLDLVSGLNTELRN 757

Query:   715 VKKAAVIDADXXXXXXXXXXXXXXXXXXFLDTEMKNKDEKTEFYNVVTKFLERAETDIAW 774
             VKK A ID +                      ++K  +E   F + ++ FL   E  +  
Sbjct:   758 VKKTATIDLEGLVTSVSNLRDGLGQLSCLASEKLKGDEENRAFVSSMSSFLRYGEKSLEE 817

Query:   775 LLEEEKRIMALVKSTADYFHGNSGKDEG--LRLFTIVRDFLIMLDKSCKQVKITTKPSRT 832
             L E+EKRIM  V   A+YFHG+   DE   LR+F IVRDFL MLD  C++++    P+  
Sbjct:   818 LREDEKRIMERVGEIAEYFHGDVRGDEKNPLRIFVIVRDFLGMLDHVCRELRCVRVPNSP 877

Query:   833 S 833
             S
Sbjct:   878 S 878

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0016043 "cellular component organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

TAIR|locus:2094493 AFH1 "formin homology 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
 Identities = 187/469 (39%), Positives = 255/469 (54%)

Query:   414 KTKLKPFFWDKVLASPDHAMVWHEISSGSFQFNEEMIESLFGYKPATKSRNECGKSNSVS 473
             K KLK   WDKV AS D  MVW  + S SF+ +EEMIE+LF  K      N+   +    
Sbjct:   595 KPKLKALHWDKVRASSDREMVWDHLRSSSFKLDEEMIETLFVAKSLNNKPNQSQTTPRCV 654

Query:   474 SESSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDAXXXXXXXXXXXXXXXX--KMAPTT 531
               S  Q  +++D +KAQN++I+LRALN+T EEV +A                  KMAPT 
Sbjct:   655 LPSPNQENRVLDPKKAQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTK 714

Query:   532 DEELKLRLFPGDIS-QLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTL 590
             +EE KL+ +  D   +LG AE+FLK ++DIPFAFKR+++++++ + + ++  +K SF+TL
Sbjct:   715 EEERKLKAYNDDSPVKLGHAEKFLKAMLDIPFAFKRVDAMLYVANFESEVEYLKKSFETL 774

Query:   591 EVACDXXXXXXXXXXXXEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLL 650
             E AC+            EAVLKTGNRMN GT RG A AFKLDTLLKL DVKG DGKTTLL
Sbjct:   775 EAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLL 834

Query:   651 HFVVQEIIRSEGIXXXXXXXXXXXXXXXXLKSEEFVEDSSPQSAEKYSILGLQVVSGLST 710
             HFVVQEIIR+EG                 L       D       K   LGLQVVS L +
Sbjct:   835 HFVVQEIIRAEG---------------TRLSGNNTQTDDI-----KCRKLGLQVVSSLCS 874

Query:   711 ELEDVKKAAVIDADXXXXXXXXXXXXXXXXXXFLDTEMKNKDEKTE--FYNVVTKFLERA 768
             EL +VKKAA +D++                   +  +    +E     F   +  FL+RA
Sbjct:   875 ELSNVKKAAAMDSEVLSSYVSKLSQGIAKINEAIQVQSTITEESNSQRFSESMKTFLKRA 934

Query:   769 ETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEG--LRLFTIVRDFLIMLDKSCKQVKIT 826
             E +I  +  +E   ++LVK   +YFHGNS K+E    R+F +VRDFL ++D+ CK+V + 
Sbjct:   935 EEEIIRVQAQESVALSLVKEITEYFHGNSAKEEAHPFRIFLVVRDFLGVVDRVCKEVGMI 994

Query:   827 TKPSRTSRKETLTSSPSRENRQPSSDMRQKLFPAIEDRRMDFSSSDDES 875
              +        T+ SS + +   P + M  +  P +  RR   SSS   S
Sbjct:   995 NE-------RTMVSS-AHKFPVPVNPMMPQPLPGLVGRRQSSSSSSSSS 1035

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0016020 "membrane" evidence=IDA

GO:0030036 "actin cytoskeleton organization" evidence=IDA;TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0051015 "actin filament binding" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0045010 "actin nucleation" evidence=IDA

GO:0051016 "barbed-end actin filament capping" evidence=IDA

TAIR|locus:2043989 AT2G43800 [Arabidopsis thaliana (taxid:3702)]

 Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
 Identities = 183/442 (41%), Positives = 241/442 (54%)

Query:   414 KTKLKPFFWDKVLASPDHAMVWHEISSGSFQFNEEMIESLFGYKPATKSRNECGKSNSVS 473
             K KLK   WDKV AS    MVW +I S SFQ NEEMIE+LF     T SR   G   SVS
Sbjct:   445 KPKLKTLHWDKVRASSSRVMVWDQIKSNSFQVNEEMIETLFKVNDPT-SRTRDGVVQSVS 503

Query:   474 SESSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDAXXXXXXXXXXXXXXX--XKMAPTT 531
              E+     + +D RK+ N++I+LRALN+T++EV +A                  KMAPT 
Sbjct:   504 QEN-----RFLDPRKSHNIAILLRALNVTADEVCEALIEGNSDTLGPELLECLLKMAPTK 558

Query:   532 DEELKLRLFP----GDISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSF 587
             +EE KL+       G  S++GPAE+FLK L++IPFAFKRI++++++   + ++  +  SF
Sbjct:   559 EEEDKLKELKDDDDGSPSKIGPAEKFLKALLNIPFAFKRIDAMLYIVKFESEIEYLNRSF 618

Query:   588 KTLEVACDXXXXXXXXXXXXEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKT 647
              TLE A              EAVLKTGNRMN GT RG A AFKLDTLLKL D+KG DGKT
Sbjct:   619 DTLEAATGELKNTRMFLKLLEAVLKTGNRMNIGTNRGDAHAFKLDTLLKLVDIKGADGKT 678

Query:   648 TLLHFVVQEIIRSEGIXXXXXXXXXXXXXXXXLKSEEFVEDSSPQSAEKYSILGLQVVSG 707
             TLLHFVVQEII+ EG                    +   E S+ Q   +   LGLQVVSG
Sbjct:   679 TLLHFVVQEIIKFEGARVPFTPSQSHI-------GDNMAEQSAFQDDLELKKLGLQVVSG 731

Query:   708 LSTELEDVKKAAVIDADXXXXXXXXXXXXXXXXXXFLDTEMKNKDEKTEFYNVVTKFLER 767
             LS++L +VKKAA +D++                   + TE+K +     F   +  FL +
Sbjct:   732 LSSQLINVKKAAAMDSNSLINETAEIARGIAKVKEVI-TELKQETGVERFLESMNSFLNK 790

Query:   768 AETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEGLRLFTIVRDFLIMLDKSCKQVKITT 827
              E +I  L      +M +VK   +YFHGNS +    R+F +VRDFL +LD+ CK+V    
Sbjct:   791 GEKEITELQSHGDNVMKMVKEVTEYFHGNS-ETHPFRIFAVVRDFLTILDQVCKEVGRVN 849

Query:   828 KPSRTSRKETLTSSPSRENRQP 849
             +  RT        SPS +   P
Sbjct:   850 E--RTVYGSMPLHSPSNQTATP 869

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0016043 "cellular component organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2020568 FH8 "formin 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 643 (231.4 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
 Identities = 152/418 (36%), Positives = 220/418 (52%)

Query:   414 KTKLKPFFWDKVLASPDHAMVWHEISSGSFQFNEEMIESLFGYKPATKSRNECGKSNSVS 473
             + KLKP  WDKV    DH+MVW +I  GSF F+ +++E+LFGY    K   E G   +  
Sbjct:   303 QVKLKPLHWDKVNPDSDHSMVWDKIDRGSFSFDGDLMEALFGYVAVGKKSPEQGDEKNPK 362

Query:   474 SESSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDAXXXXXXXXXXXXXXXXKMAPTTDE 533
             S      I I+D RK+QN +I+L++L +T EE+V++                ++APT +E
Sbjct:   363 STQ----IFILDPRKSQNTAIVLKSLGMTREELVESLIEGNDFVPDTLERLARIAPTKEE 418

Query:   534 ELKLRLFPGDISQLGPAERFLKTLV-DIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEV 592
             +  +  F GD ++L  AE FL  L+  +P AF R+ + +F  ++  +M+      +TL++
Sbjct:   419 QSAILEFDGDTAKLADAETFLFHLLKSVPTAFTRLNAFLFRANYYPEMAHHSKCLQTLDL 478

Query:   593 ACDXXXXXXXXXXXXEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLHF 652
             AC             EA+LK GNRMN GT RG AQAF L  LLKL+DVK  DGKT+LL+F
Sbjct:   479 ACKELRSRGLFVKLLEAILKAGNRMNAGTARGNAQAFNLTALLKLSDVKSVDGKTSLLNF 538

Query:   653 VVQEIIRSEG---IXXXXXXXXXXXXXXXXLKSEEFVEDSSPQSAEK-YSILGLQVVSGL 708
             VV+E++RSEG   +                      ++  S +  EK Y  LGL VV GL
Sbjct:   539 VVEEVVRSEGKRCVMNRRSHSLTRSGSSNYNGGNSSLQVMSKEEQEKEYLKLGLPVVGGL 598

Query:   709 STELEDVKKAAVIDADXXXXXXXXXXXXXXXXXXFLDTEMKNKDEKTEFYNVVTKFLERA 768
             S+E  +VKKAA +D +                   +  E ++  E   F   +  FL+  
Sbjct:   599 SSEFSNVKKAACVDYETVVATCSALAVRAKDAKTVIG-ECED-GEGGRFVKTMMTFLDSV 656

Query:   769 ETDIAWLLEEEKRIMALVKSTADYFHGNS---GKDEGLRLFTIVRDFLIMLDKSCKQV 823
             E ++     EE+++M LVK T DY+   +   GK+  L LF IVRDFL M+DK C  +
Sbjct:   657 EEEVKIAKGEERKVMELVKRTTDYYQAGAVTKGKNP-LHLFVIVRDFLAMVDKVCLDI 713

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0005522 "profilin binding" evidence=IDA

GO:0009932 "cell tip growth" evidence=IMP

GO:0045010 "actin nucleation" evidence=IDA

GO:0051015 "actin filament binding" evidence=IDA

GO:0005911 "cell-cell junction" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2025981 AT1G59910 [Arabidopsis thaliana (taxid:3702)]

 Score = 646 (232.5 bits), Expect = 5.1e-65, Sum P(2) = 5.1e-65
 Identities = 163/501 (32%), Positives = 243/501 (48%)

Query:   387 PSPLGPHRQARXXXXXXXXXXXXXXAAKTKLKPFFWDKVLASPDHAMVWHEISSGSFQFN 446
             P P G  +                   + KLKP  WDK+      +MVWH+I  GSF F+
Sbjct:   433 PKPPGNPKGPTKSGETSLAVGKTEDPTQPKLKPLHWDKMNPDASRSMVWHKIDGGSFNFD 492

Query:   447 EEMIESLFGYKPATKSR-NECGKSNSVSSESSAQYIQIIDTRKAQNLSIILRALNLTSEE 505
              +++E+LFGY     S  N   ++ +VS+        I+D RK+QN +I+L++L +T EE
Sbjct:   493 GDLMEALFGYVARKPSESNSVPQNQTVSNSVPHNQTYILDPRKSQNKAIVLKSLGMTKEE 552

Query:   506 VVDAXXXXXXXXXXXXXXXXKMAPTTDEELKLRLFPGDISQLGPAERFL-KTLVDIPFAF 564
             ++D                  +APT +E+ ++  F G+   L  A+  L   L  +P AF
Sbjct:   553 IIDLLTEGHDAESDTLEKLAGIAPTPEEQTEIIDFDGEPMTLAYADSLLFHILKAVPSAF 612

Query:   565 KRIESLIFMGSHQEDMSSIKDSFKTLEVACDXXXXXXXXXXXXEAVLKTGNRMNDGTYRG 624
              R   ++F  ++  +++  K S  TLE AC+            EA+LK GNRMN GT RG
Sbjct:   613 NRFNVMLFKINYGSEVAQQKGSLLTLESACNELRARGLFMKLLEAILKAGNRMNAGTARG 672

Query:   625 GAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIXXXXXXXXXXXXXXXXLKSEE 684
              AQAF L  L KL+DVK  D KTTLLHFVV+E++RSEG                   S E
Sbjct:   673 NAQAFNLTALRKLSDVKSVDAKTTLLHFVVEEVVRSEGKRAAMNKNMMSSDNG----SGE 728

Query:   685 FVEDSSPQSAEKYSILGLQVVSGLSTELEDVKKAAVIDADXXXXXXXXXXXXXXXXXXFL 744
               + S  +   ++  +GL ++ GLS+E  +VKKAA ID D                   L
Sbjct:   729 NADMSREEQEIEFIKMGLPIIGGLSSEFTNVKKAAGIDYDSFVATTLALGTRVKETKRLL 788

Query:   745 DTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEGL- 803
             D + K K++       +  F E AE ++  + EE+ RIM LVK T +Y+   + K+  L 
Sbjct:   789 D-QSKGKEDGC--LTKLRSFFESAEEELKVITEEQLRIMELVKKTTNYYQAGALKERNLF 845

Query:   804 RLFTIVRDFLIMLDKSCKQVKITTKPSRTSRKETL----TSSPSRENRQPSSDMRQKL-F 858
             +LF I+RDFL M+D +C ++    +  +  R  T     +SSP+      ++  R  + F
Sbjct:   846 QLFVIIRDFLGMVDNACSEIARNQRKQQQQRPATTVAGASSSPAETPSVAAAPQRNAVRF 905

Query:   859 PAIEDRRMDFSS---SDDESD 876
             P +    M  SS   S  +SD
Sbjct:   906 PILPPNFMSESSRYSSSSDSD 926

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0016043 "cellular component organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2156248 AT5G48360 [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 1.0e-45, Sum P(2) = 1.0e-45
 Identities = 92/237 (38%), Positives = 142/237 (59%)

Query:   429 PDHAMVWHEISSGSFQFNEEMIESLFGYKPATKSRNECGKSNSVSSESSAQYIQIIDTRK 488
             P   + W  + S S + ++EM+E++F              +NS +        Q++D RK
Sbjct:   428 PPKQLHWERLRSSSSKLSKEMVETMF-------------IANSSNPRDLPIQNQVLDPRK 474

Query:   489 AQNLSIILRALNLTSEEVVDAXXXXXXXXXXXXXXX--XKMAPTTDEELKLRLFPGDISQ 546
             AQN++ +L+ LNL++++V  A                  ++AP+ +EE KL+ F  D S+
Sbjct:   475 AQNIATLLQLLNLSTKDVCQALLDGDCDVLGAELLECLSRLAPSKEEERKLKSF-SDGSE 533

Query:   547 LGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDXXXXXXXXXXX 606
             +GPAERFLK L+ +PF FKR+++L+F+ +   ++  ++ SF  ++VAC+           
Sbjct:   534 IGPAERFLKELLHVPFVFKRVDALLFVANFHSEIKRLRKSFSVVQVACEELRNSRMFSIL 593

Query:   607 XEAVLKTGNRMNDGTYR-GGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEG 662
              EA+LKTGN M+  T R G A AFKLDTLLKL DVKG DG+++LLHFVVQE+++SEG
Sbjct:   594 LEAILKTGNMMSVRTNRCGDADAFKLDTLLKLVDVKGLDGRSSLLHFVVQEMMKSEG 650

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016043 "cellular component organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0042127 "regulation of cell proliferation" evidence=RCA

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

TAIR|locus:2079711 AT3G07540 [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 7.5e-36, Sum P(2) = 7.5e-36
 Identities = 81/253 (32%), Positives = 125/253 (49%)

Query:   414 KTKLKPFFWDKVLASPDHAMVWHEISSGSFQFNEEMIESLFGYKPATKSRNECGKSNSVS 473
             K KLKP  WDKV  S      W  +   S   N +   SL            C     ++
Sbjct:   476 KPKLKPLPWDKVRPSSRRTNTWDRLPYNSSNANSKQ-RSL-----------SCDLP-MLN 522

Query:   474 SESSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDAXXXXXXXXXXXXX--XXXKMAPTT 531
              ES     +++D RK+QN++++L  L LT+ +V  A                  ++AP+ 
Sbjct:   523 QES-----KVLDPRKSQNVAVLLTTLKLTTNDVCQALRDGHYDALGVELLESLARVAPSE 577

Query:   532 DEELKLRLFPGD-ISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTL 590
             +EE KL  +  D + +L P+ERFLK L+++PF FKR+++L+ + S    +  +K SF  +
Sbjct:   578 EEEKKLISYSDDSVIKLAPSERFLKELLNVPFVFKRVDALLSVASFDSKVKHLKRSFSVI 637

Query:   591 EVACDXXXXXXXXXXXXEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLL 650
             + AC+             A L+ G +       G A  FKL+ LL L D+K +DG+T++L
Sbjct:   638 QAACEALRNSRMLLRLVGATLEAGMKS------GNAHDFKLEALLGLVDIKSSDGRTSIL 691

Query:   651 HFVVQEIIRSEGI 663
               VVQ+I  SEGI
Sbjct:   692 DSVVQKITESEGI 704

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0016043 "cellular component organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

UNIPROTKB|F1NBT1 FHDC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 291 (107.5 bits), Expect = 5.1e-21, Sum P(2) = 5.1e-21
 Identities = 67/247 (27%), Positives = 114/247 (46%)

Query:   414 KTKLKPFFWDKVLASPDHAM--VWHEISSGSFQFNEEMIESLFGYKPATKSRNECGKSNS 471
             K +++ FFW  +          +W   +   +Q + + IE LFG +  TK  +   +S  
Sbjct:    87 KKRMRSFFWKTIPEEQVRGKTNIWTIAARPQYQIDTKTIEELFGQQEETKPPDSRSRSLK 146

Query:   472 VSSESSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDAXXXXXXX--XXXXXXXXXKMAP 529
              S + + + + I+D +++ N+ I L+    ++E +++                   K+ P
Sbjct:   147 ASFKETKEEVSILDAKRSMNIGIFLKQFRKSAESIIEDIYQGRSEPYASELLHEFLKLLP 206

Query:   530 TTDEELKLRLFPGDISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKT 589
               +E  KL+ F GD+S+L  A+ F+  L+ +P    RI++++         +S++D  K 
Sbjct:   207 EAEEVKKLKAFDGDVSKLSQADSFMYLLIQVPNYALRIQAMVLEREFSPSCASLQDDMKI 266

Query:   590 LEVACDXXXXXXXXXXXXEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTL 649
             +  A                VL+ GN MN G Y G A  FKL +LLKLAD K      +L
Sbjct:   267 IRQATKELMTCEELHSILHLVLQAGNIMNAGGYAGNAVGFKLSSLLKLADTKANKPGMSL 326

Query:   650 LHFVVQE 656
             LHFV  E
Sbjct:   327 LHFVALE 333

GO:0003779 "actin binding" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O23373	FH3_ARATH	No assigned EC number	0.5353	0.7659	0.8547	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Al_scaffold_0007_2770 annotation not avaliable (782 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	876
pfam02181	372	pfam02181, FH2, Formin Homology 2 Domain	1e-116
smart00498	392	smart00498, FH2, Formin Homology 2 Domain	4e-95
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-08
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	2e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-08
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	4e-08
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	9e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-07
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	1e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-07
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	3e-07
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	3e-07
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	3e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-07
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	4e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-07
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	7e-07
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	1e-06
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	1e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-06
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-06
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	2e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-06
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	3e-06
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	3e-06
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	3e-06
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	4e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-06
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	9e-06
PRK00575	92	PRK00575, tatA, twin arginine translocase protein	9e-06
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	1e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-05
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	2e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	2e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-05
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	3e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	3e-05
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	3e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-05
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	4e-05
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	4e-05
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	4e-05
PHA01732	94	PHA01732, PHA01732, proline-rich protein	4e-05
pfam04554	57	pfam04554, Extensin_2, Extensin-like region	4e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	5e-05
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	5e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	5e-05
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	6e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	6e-05
PHA03291	401	PHA03291, PHA03291, envelope glycoprotein I; Provi	6e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	7e-05
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	7e-05
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	7e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-05
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	8e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	9e-05
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	9e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	9e-05
pfam09483	185	pfam09483, HpaP, Type III secretion protein (HpaP)	9e-05
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	9e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-04
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	1e-04
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	1e-04
PHA03282	540	PHA03282, PHA03282, envelope glycoprotein E; Provi	1e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-04
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	2e-04
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	2e-04
pfam10349	111	pfam10349, WWbp, WW-domain ligand protein	2e-04
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	2e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-04
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	3e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-04
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	3e-04
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	3e-04
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	3e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-04
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	3e-04
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	3e-04
PRK14952	584	PRK14952, PRK14952, DNA polymerase III subunits ga	3e-04
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	4e-04
PRK12438	991	PRK12438, PRK12438, hypothetical protein; Provisio	4e-04
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	5e-04
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	5e-04
pfam04554	57	pfam04554, Extensin_2, Extensin-like region	5e-04
COG2948	360	COG2948, VirB10, Type IV secretory pathway, VirB10	5e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	6e-04
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	6e-04
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	7e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	7e-04
pfam10349	111	pfam10349, WWbp, WW-domain ligand protein	7e-04
pfam06003	264	pfam06003, SMN, Survival motor neuron protein (SMN	7e-04
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	8e-04
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	8e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	9e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.001
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	0.001
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	0.001
pfam10349	111	pfam10349, WWbp, WW-domain ligand protein	0.001
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.001
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	0.001
PRK12438	991	PRK12438, PRK12438, hypothetical protein; Provisio	0.001
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.001
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.001
PHA03419	200	PHA03419, PHA03419, E4 protein; Provisional	0.001
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	0.001
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	0.001
pfam12868	135	pfam12868, DUF3824, Domain of unknwon function (DU	0.001
pfam04625	407	pfam04625, DEC-1_N, DEC-1 protein, N-terminal regi	0.001
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	0.001
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002
pfam04652	315	pfam04652, DUF605, Vta1 like	0.002
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.002
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.002
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	0.002
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.002
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	0.002
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	0.002
PHA01732	94	PHA01732, PHA01732, proline-rich protein	0.002
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.002
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	0.002
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	0.002
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	0.002
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	0.002
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	0.002
pfam14179	110	pfam14179, YppG, YppG-like protein	0.002
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.003
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.003
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.003
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.003
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	0.003
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	0.003
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.003
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	0.003
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	0.003
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	0.003
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	0.003
PRK06549	130	PRK06549, PRK06549, acetyl-CoA carboxylase biotin	0.003
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	0.003
pfam04834	97	pfam04834, Adeno_E3_14_5, Early E3 14	0.003
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	0.004
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.004
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.004
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	0.004
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	0.004
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.004
pfam10138	98	pfam10138, Tellurium_res, Tellurium resistance pro	0.004

>gnl|CDD|216919 pfam02181, FH2, Formin Homology 2 Domain

 Score =  358 bits (920), Expect = e-116
 Identities = 144/406 (35%), Positives = 209/406 (51%), Gaps = 43/406 (10%)

Query: 414 KTKLKPFFWDKVLASPDHAMVWHEISSGSFQFNEEMIESLFGYKPATKSRNECGKSNSVS 473
           K KLKP  WDKV  + D   VW E+   SF+ + ++ E    +    K +         S
Sbjct: 8   KKKLKPLHWDKVNPAQDRGTVWDELDEESFEKDLDLSELEELFSAKAKKKKSKKSEKKSS 67

Query: 474 SESSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDALEEGNE--LPLELLQTLLKMAPTT 531
           S+   + I ++D +++QN++I+LR L L  EE+V A+ E +E  L LELL+ LLKMAPT 
Sbjct: 68  SKKKKKEISVLDPKRSQNIAILLRKLKLPPEEIVQAILEMDESVLGLELLENLLKMAPTK 127

Query: 532 DEELKLRLFPGDISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLE 591
           +E  KL+ + GD S+LG AE+FL  L  IP   +R+E+L+F  + +E++  +K S +TLE
Sbjct: 128 EELKKLKEYKGDPSKLGRAEQFLLELSKIPRLEERLEALLFKSTFEEEVEELKPSLETLE 187

Query: 592 VACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLH 651
            A ++LR SR F KLLE +L  GN MN GT RG A+ FKL +LLKL+D K TD KTTLLH
Sbjct: 188 AASEELRESRKFKKLLELILALGNYMNSGTRRGNAKGFKLSSLLKLSDTKSTDNKTTLLH 247

Query: 652 FVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTE 711
           ++V+ I                                            L  +   S+E
Sbjct: 248 YLVKIIRE-----------------------------------------KLPDLLDFSSE 266

Query: 712 LEDVKKAAVIDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETD 771
           L  V+KAA +D + +   V +L   L K +  L+    ++    +F   + +FLE AE  
Sbjct: 267 LSHVEKAAKVDLEQLEKDVKELEKGLKKLERELELSALDEHPDDKFVEKMKEFLEEAEEK 326

Query: 772 IAWLLEEEKRIMALVKSTADYFHGNSGKDEGLRLFTIVRDFLIMLD 817
           +  L    K  M L K   +YF  +  +      F I+RDFL M  
Sbjct: 327 LDKLESLLKEAMELFKELTEYFGEDPKETSPEEFFKILRDFLRMFK 372

Length = 372

>gnl|CDD|214697 smart00498, FH2, Formin Homology 2 Domain

 Score =  303 bits (778), Expect = 4e-95
 Identities = 141/425 (33%), Positives = 218/425 (51%), Gaps = 53/425 (12%)

Query: 414 KTKLKPFFWDKVLASPDHAMVWHEISSGSFQFNEEMIESLFGYKPATKSRN-ECGKSNSV 472
           K KLKP  WDK+  S     VW +I   S + + + +E LF  K  TKS + +  +  S+
Sbjct: 7   KKKLKPLHWDKLNPSDLSGTVWDKIDEES-EGDLDELEELFSAKEKTKSASKDVSEKKSI 65

Query: 473 SSESSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDALEEGNE--LPLELLQTLLKMAPT 530
             + ++Q  +I+D +++QNL+I+LR L+++ EE+ +A+ EG+E  L ++LL+ LLK APT
Sbjct: 66  LKKKASQEFKILDPKRSQNLAILLRKLHMSYEEIKEAILEGDEDVLSVDLLEQLLKYAPT 125

Query: 531 TDEELKLRLFPG-DISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKT 589
            +E  KLR +   D  +L  AE+FL  + +IP+  +R+ +L+F  + +E++  +K   + 
Sbjct: 126 KEELKKLREYKEEDPEELARAEQFLLLISNIPYLEERLNALLFKANFEEEVEDLKPQIEK 185

Query: 590 LEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTL 649
           +E AC++LR S+ F KLLE +L  GN MN G+ RG A  FKL +LLKL+DVK  D KTTL
Sbjct: 186 VEAACEELRESKKFRKLLELILAIGNYMNGGSRRGQAYGFKLSSLLKLSDVKSADNKTTL 245

Query: 650 LHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLS 709
           LHF+V+ I +                                       + GL     L 
Sbjct: 246 LHFLVKIIRKKY-------------------------------------LGGLSDPENLD 268

Query: 710 TELEDV----KKAAVIDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFL 765
            +  +V     KAA    D +   +S L T   K   +   E        EF+    +FL
Sbjct: 269 DKFIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYY-GEDPKDTSPEEFFKDFNEFL 327

Query: 766 ER----AETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEG--LRLFTIVRDFLIMLDKS 819
           +     AE +I    EEE+R   LVK T +Y   +S + E      F + RDFL +LD  
Sbjct: 328 KEFSKAAEENIKKEEEEEERRKKLVKETTEYEQSSSRQKERNPSMDFEVERDFLGVLDSL 387

Query: 820 CKQVK 824
            +++ 
Sbjct: 388 LEELG 392

FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain. Length = 392

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 59.2 bits (143), Expect = 1e-08
 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 330  SSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSP 389
              +     S    + A PP  P  P  P  PPPP+P+P  PP  P P P P    +   P
Sbjct: 2884 RRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPP-PQPQPPPPPPPRPQPP 2942

Query: 390  LGPHRQ 395
            L P   
Sbjct: 2943 LAPTTD 2948

Length = 3151

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 20/47 (42%), Positives = 20/47 (42%)

Query: 346 APPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGP 392
           APPPPPP      P P   P PP P   PAP P        P P  P
Sbjct: 42  APPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADP 88

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 57.6 bits (139), Expect = 3e-08
 Identities = 59/250 (23%), Positives = 84/250 (33%), Gaps = 20/250 (8%)

Query: 151  RASLPPVSDSIALPPISVSIATPAPSRQRKGAPASSPSPKPRFHSPPTSPNKRPSPSPQP 210
            R + P +  + A P +    ATP    +    P ++  P P   +PP +P   P      
Sbjct: 2729 RQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAP---APPAAPAAGPPRRLTR 2785

Query: 211  TAKKKAPPAVIVKNQPEKDQDDDVRHKEIIIAVVATAVTTFALVALLFLCCLKSRSKRID 270
             A      +      P    D         +   A A+   A  A        ++     
Sbjct: 2786 PAVASLSESRESLPSPWDPADPPA-----AVLAPAAALPPAASPAGPLPPPTSAQPTAPP 2840

Query: 271  PVKGQNDDRPLLNSSLSAGMHLSSSVLLLAPYIFLFGSKTYNFTSWNLSFRFLTAPH-SG 329
            P  G       L  S++ G  +       +P                   R L  P  S 
Sbjct: 2841 PPPGPPPPSLPLGGSVAPGGDVRRRPPSRSP-------AAKPAAPARPPVRRLARPAVSR 2893

Query: 330  SSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRP-PAPPKVPAPPPKPMT---GVQ 385
            S+ + A   ++P     P  PPPP   P PPPPP+P+P P PP  P PP  P T   G  
Sbjct: 2894 STESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAG 2953

Query: 386  KPSPLGPHRQ 395
            +PS   P   
Sbjct: 2954 EPSGAVPQPW 2963

Length = 3151

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 55.7 bits (134), Expect = 4e-08
 Identities = 21/52 (40%), Positives = 23/52 (44%)

Query: 341 PPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGP 392
           PP+ AA  P P  P PPPPP  P    P  P    PPP        P P+ P
Sbjct: 47  PPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDP 98

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 53.5 bits (129), Expect = 9e-08
 Identities = 18/57 (31%), Positives = 21/57 (36%)

Query: 333 TEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSP 389
             A  S +P T+A P  P  P   P  PP P+P     PK             KP P
Sbjct: 79  DAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEP 135

Length = 226

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 55.3 bits (133), Expect = 1e-07
 Identities = 56/258 (21%), Positives = 80/258 (31%), Gaps = 38/258 (14%)

Query: 151  RASLPPVSDSIALPPISVSIATPAPSRQRKGAPASSPSPKPRFHSPPTSPNKRPS----- 205
             A+ P       +PP       PAP R  +   A       +  SPP  P +R +     
Sbjct: 2634 AANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVG 2693

Query: 206  --------PSPQPTAKKKAPPAVIVKNQPEKDQDDDVRHKEIIIAVVATAVTTFALVALL 257
                    P P PT +      V     P            +  A    AV         
Sbjct: 2694 SLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATP-- 2751

Query: 258  FLCCLKSRSKRIDPVKGQNDDRPLLNSSLSAGMHLSSSVLLLAPYIFLFGSKTYNFTSWN 317
                    ++   P        P   ++ +AG     +   +A    L  S+    + W+
Sbjct: 2752 -----GGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVAS---LSESRESLPSPWD 2803

Query: 318  LSFRFLTAPHSGSSMTEAQS---SNEPPTLAAPPPPPPPPGPPPPPPPP----------- 363
             +          +++  A S      PPT A P  PPPPPGPPPP  P            
Sbjct: 2804 PADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVR 2863

Query: 364  -RPRPPAPPKVPAPPPKP 380
             RP   +P   PA P +P
Sbjct: 2864 RRPPSRSPAAKPAAPARP 2881

Length = 3151

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 54.1 bits (130), Expect = 1e-07
 Identities = 23/56 (41%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 341 PPTLAAPPPPPPPPGPP----PPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGP 392
           P T AA P P  PP PP    PP P P     APP  PA P  P      P+   P
Sbjct: 48  PSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPPP 103

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 54.9 bits (132), Expect = 2e-07
 Identities = 24/79 (30%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 326  PHSGSSMTEAQSSNEPPTLAAPPPPPP-PPGPPPPPPPPRPR---PPAPPKVPAPPPKPM 381
            P S           +P   A P P PP    P PPPP P P    P   P    PPP+  
Sbjct: 2593 PQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERP 2652

Query: 382  TGVQKPSPLGPHRQARSIS 400
                 P  +   R+AR + 
Sbjct: 2653 RDDPAPGRVSRPRRARRLG 2671

Length = 3151

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 53.0 bits (127), Expect = 3e-07
 Identities = 19/47 (40%), Positives = 20/47 (42%)

Query: 345 AAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLG 391
           A P PPPPPP      P P   PP PP    P P+P      P P  
Sbjct: 39  ADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPP 85

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 53.0 bits (127), Expect = 3e-07
 Identities = 16/40 (40%), Positives = 17/40 (42%)

Query: 341 PPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKP 380
           PP   +     P P  PPPPPPP   P   P  P   P P
Sbjct: 44  PPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPP 83

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 24/64 (37%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 333 TEAQSSNEPPTLAAPPPPPP--PPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPL 390
           T+    N P     P  P P  PP P  P  P  P  P PP  P PP  PM  +Q   PL
Sbjct: 85  TQHHQPNLPQPAQQPFQPQPLQPPQPQQPMQPQPPVHPIPPLPPQPPLPPMFPMQPLPPL 144

Query: 391 GPHR 394
            P  
Sbjct: 145 LPDL 148

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 53.8 bits (129), Expect = 4e-07
 Identities = 60/281 (21%), Positives = 84/281 (29%), Gaps = 65/281 (23%)

Query: 134 APRRYLAAELFAERSTKRASLPPVSDSIALPPISVSIA-----TPAPSRQRKGAPASSPS 188
           A   YL  E F ER  +     P+   IA P     +       P  +R      A+ P 
Sbjct: 227 ASETYLQDEPFVER--RVVISHPLRGDIAAPAPPPVVGEGADRAPETAR-----GATGPP 279

Query: 189 PKPRFHSPPTSPNKRPSPSPQPTAKKKAPPAVIVKNQP--------EKDQDDDVRHKEII 240
           P P   +P  +    P       A   AP A+     P         +++DD+    E++
Sbjct: 280 PPPEAAAP--NGAAAPPDGVWGAALAGAPLALPAPPDPPPPAPAGDAEEEDDEDGAMEVV 337

Query: 241 IAVVATAVTTFALVALLFLCCLKSRSKRIDPVKGQNDDRPLLN-----SSLSAGMHLSSS 295
             +                     R ++  P+      RP          LSAG H    
Sbjct: 338 SPL--------------------PRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKR 377

Query: 296 VLLLAPYIFLFGSKTYNFTSWNLSFRFLTAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPG 355
             L               T    S R    P +     + Q+    P  A+ P P P P 
Sbjct: 378 ASLP--------------TRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPV 423

Query: 356 PPPPPPPPRPRPPAP----PKVPAPPPKPMTGVQKPSPLGP 392
           P   PPPP    P+        PAPPP+         P   
Sbjct: 424 PASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPD 464

Length = 3151

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 52.2 bits (125), Expect = 4e-07
 Identities = 20/51 (39%), Positives = 21/51 (41%)

Query: 342 PTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGP 392
           P  A   P PPPP P      P P  P PP  PA PP P       +P  P
Sbjct: 34  PATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPP 84

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 53.7 bits (130), Expect = 4e-07
 Identities = 15/66 (22%), Positives = 22/66 (33%)

Query: 324 TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTG 383
           TA  + ++   +  +  P   A   P P PP    P  PP+P   A        P     
Sbjct: 45  TAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAA 104

Query: 384 VQKPSP 389
              P+ 
Sbjct: 105 AAAPAA 110

Length = 1228

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 51.4 bits (123), Expect = 7e-07
 Identities = 23/56 (41%), Positives = 25/56 (44%)

Query: 337 SSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGP 392
           ++  P   A PPPPPP   P P P  P   PP PP  P  PP P      P P  P
Sbjct: 51  AAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPPPPAP 106

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 22/65 (33%), Positives = 24/65 (36%)

Query: 325 APHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGV 384
           AP      T A +         PPP  PP   P  P    P PPA P  P PPP      
Sbjct: 42  APPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAP 101

Query: 385 QKPSP 389
             P+P
Sbjct: 102 PPPAP 106

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 23/63 (36%), Positives = 28/63 (44%)

Query: 325 APHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGV 384
            P S ++   A ++  PP   A PP P P  P   PPPP   P APP  P  P  P    
Sbjct: 46  PPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPPPPA 105

Query: 385 QKP 387
            +P
Sbjct: 106 PEP 108

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 51.8 bits (125), Expect = 1e-06
 Identities = 27/104 (25%), Positives = 35/104 (33%), Gaps = 10/104 (9%)

Query: 315 SWNLSFRFLTAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVP 374
           SW   F       + +    A ++    +  A  P    P  P P PP    P APPK P
Sbjct: 28  SWREFFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPK-P 86

Query: 375 APPPKPMTGVQKPSPLGPHRQARSISSEGNEVEGES----GAAK 414
           A            +P  P   A + +     VE E     GAA 
Sbjct: 87  AAAAAA-----AAAPAAPPAAAAAAAPAAAAVEDEVTPLRGAAA 125

Length = 1228

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 1/77 (1%)

Query: 325 APHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGV 384
           +P   S  +  +  + P   + PP P       PPP P  P  P+PP  PA PP P    
Sbjct: 191 SPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQ- 249

Query: 385 QKPSPLGPHRQARSISS 401
           Q P          S S+
Sbjct: 250 QVPPLSTAKPTPPSASA 266

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 23/70 (32%), Positives = 25/70 (35%), Gaps = 1/70 (1%)

Query: 325 APHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGV 384
            P  G        +  P +     PPP  P  PPP P P    PA P  P  PP P    
Sbjct: 40  PPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPSPLAPPAPARKP 99

Query: 385 QKPSPLGPHR 394
             P P  P R
Sbjct: 100 PLPPP-RPQR 108

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.1 bits (123), Expect = 2e-06
 Identities = 47/240 (19%), Positives = 66/240 (27%), Gaps = 26/240 (10%)

Query: 156 PVSDSIALPPISVSIATPAPSRQRKG-APASSPSPKPRFHSPPTSPNKRPSPSPQPTAKK 214
                IA      +                S+P  K    +P   P K   P P P A+ 
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVP-AEP 421

Query: 215 KAPPAVIVKNQPEKDQDDDVRHK-EIIIAVVATAVTTFALVALLFLCCLKSRSKRIDPVK 273
             P      N        ++    + I+A +    T   L     L  L S    I    
Sbjct: 422 TEPSPTPPANAANAPPSLNLEELWQQILAKLELPSTRMLLSQQAELVSLDSNRAVI---- 477

Query: 274 GQNDDRPLLNSSLSA---GMHLSSSVLLLAPYIFLFGSKT-YNFTSWNLSFRFLTAPHSG 329
                      ++S    GM  S   LL   +  + G     N  S + S     +  + 
Sbjct: 478 -----------AVSPNWLGMVQSRKPLLEQAFAKVLGRSIKLNLESQSGS----ASNTAK 522

Query: 330 SSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSP 389
           +     +S   P      P P     PP PPPPP     A    PA  P   +       
Sbjct: 523 TPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPE 582

Length = 620

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 49.9 bits (119), Expect = 3e-06
 Identities = 17/58 (29%), Positives = 19/58 (32%)

Query: 335 AQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGP 392
           A +   PP          P    PPPPPP   PPAP         P       +P  P
Sbjct: 37  ANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPP 94

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.6 bits (121), Expect = 3e-06
 Identities = 22/83 (26%), Positives = 27/83 (32%), Gaps = 2/83 (2%)

Query: 338 SNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPP--KPMTGVQKPSPLGPHRQ 395
           S  P   AA   PP  P      PPP P  P  P VP  P     +T    P    P   
Sbjct: 386 STRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYT 445

Query: 396 ARSISSEGNEVEGESGAAKTKLK 418
             +   E  +     G    +L+
Sbjct: 446 PPAPPKEEEKALIADGDVLEQLE 468

Length = 585

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 50.3 bits (120), Expect = 3e-06
 Identities = 17/51 (33%), Positives = 20/51 (39%)

Query: 345 AAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHRQ 395
           A  P P PP     P PPP  +  AP    A P       +KP    P R+
Sbjct: 14  AEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRE 64

Length = 475

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 49.5 bits (118), Expect = 4e-06
 Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 331 SMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAP-PKVPAPPPKPMTGVQKPSP 389
           +   A  +  PP  +     P P  PPPPPPP  P  P P     APPP P      P P
Sbjct: 35  ATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPP 94

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 50.4 bits (121), Expect = 4e-06
 Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 1/89 (1%)

Query: 325 APHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGV 384
              +G +     ++      AAP   P P    P          AP   PAP P P    
Sbjct: 385 LGVAGGA-GAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPS 443

Query: 385 QKPSPLGPHRQARSISSEGNEVEGESGAA 413
              +       +   ++  +     + AA
Sbjct: 444 PAGNAPAGGAPSPPPAAAPSAQPAPAPAA 472

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.6 bits (119), Expect = 7e-06
 Identities = 20/73 (27%), Positives = 23/73 (31%)

Query: 324 TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTG 383
            A  +G+    A S+      AAP P    P     P P     PAP   PAP P    G
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446

Query: 384 VQKPSPLGPHRQA 396
                       A
Sbjct: 447 NAPAGGAPSPPPA 459

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 49.4 bits (118), Expect = 9e-06
 Identities = 27/96 (28%), Positives = 33/96 (34%), Gaps = 2/96 (2%)

Query: 314 TSWNLSFRFLTAPHSGSSMTEAQSSNEPPTLAAPPP--PPPPPGPPPPPPPPRPRPPAPP 371
            +W+LS     +P    S T    S+  P    PPP  PPP P P           P PP
Sbjct: 88  PTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPP 147

Query: 372 KVPAPPPKPMTGVQKPSPLGPHRQARSISSEGNEVE 407
              +PP    +     S     RQA    S   E  
Sbjct: 148 PAASPPAAGASPAAVASDAASSRQAALPLSSPEETA 183

Length = 1352

>gnl|CDD|234797 PRK00575, tatA, twin arginine translocase protein A; Provisional

 Score = 44.7 bits (106), Expect = 9e-06
 Identities = 23/87 (26%), Positives = 31/87 (35%), Gaps = 7/87 (8%)

Query: 296 VLLLAPYIFLFGSKTYNFTSWNL--SFRFLTAPHSGSSMTEAQSSNEPPTLAAPPPPPPP 353
            +L    I LFG+K     + +L  S R        S + E QS N+    AA    P  
Sbjct: 10  AILAVVVILLFGAKKLPDAARSLGKSLRIFK-----SEVKEMQSDNKAEASAAAAQAPYQ 64

Query: 354 PGPPPPPPPPRPRPPAPPKVPAPPPKP 380
              P P    R  P A     +   +P
Sbjct: 65  VATPTPVQSQRVDPAAASGQDSTEARP 91

Length = 92

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 48.6 bits (116), Expect = 1e-05
 Identities = 17/71 (23%), Positives = 21/71 (29%)

Query: 339 NEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHRQARS 398
             P    A    P  P P  PP      PP P    A  P P       SP  P      
Sbjct: 683 VRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPP 742

Query: 399 ISSEGNEVEGE 409
            + + +  E +
Sbjct: 743 GAEQADGAENQ 753

Length = 753

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 18/79 (22%), Positives = 23/79 (29%), Gaps = 3/79 (3%)

Query: 325 APHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRP---RPPAPPKVPAPPPKPM 381
              +  S   + S   P   + P  P  P     PP P       PP  P+ P  P  P 
Sbjct: 179 PASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPP 238

Query: 382 TGVQKPSPLGPHRQARSIS 400
                P P        S +
Sbjct: 239 GPAAPPPPPVQQVPPLSTA 257

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 47.9 bits (114), Expect = 2e-05
 Identities = 50/254 (19%), Positives = 80/254 (31%), Gaps = 24/254 (9%)

Query: 152 ASLPPVSDSIALPPISV-SIATPAPSRQRKGAPASSPSPKPRFHSPPTSPNKRPSPSPQP 210
           AS    +  ++ P  +  + ++P         PA++    PR  SP ++    P+P+P  
Sbjct: 167 ASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGR 226

Query: 211 TAKKKAPPAVIVKNQPE-KDQDDDVRHKEIIIAVVATAVTTFALVALLFLCCLKSRSKRI 269
           +A   A  +    +  E         +           +   A + L       S     
Sbjct: 227 SAADDAGASSSDSSSSESSGCGWGPEN--------ECPLPRPAPITLPTRIWEASGWNGP 278

Query: 270 DPVKGQNDDRPLLNSSLSAGMHLSSSVLLLAPYIFLFGSKTYNFTSWNLSFRFLTAPHSG 329
                    RP   SS S+    S S    +P      S     +S + S          
Sbjct: 279 SS-------RPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSS-------RES 324

Query: 330 SSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSP 389
           SS + + SS      A  P P P   P P  PPP   P +P K P P   P +       
Sbjct: 325 SSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGR 384

Query: 390 LGPHRQARSISSEG 403
               R   +++   
Sbjct: 385 PTRRRARAAVAGRA 398

Length = 1352

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 25/78 (32%), Positives = 29/78 (37%), Gaps = 7/78 (8%)

Query: 323 LTAPHSGSSMTEAQSSNEPPTLAAPPPP----PPPPGPPPPPPPPRPRPPAPPKVPAPPP 378
           L  P   + +   Q         A PP     P  P   PPP P  P P   PK   PP 
Sbjct: 141 LPQPPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAPKSSHPPL 200

Query: 379 K-PMTGV--QKPSPLGPH 393
           K PM G   + P+P  P 
Sbjct: 201 KSPMAGTFYRSPAPGEPP 218

Length = 274

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 8/100 (8%)

Query: 323 LTAPHSGSSMTEAQSSNEPPTLAAPPPPP---PPPGPPPPPPPPRPRP-PAPPKVPAPPP 378
           L A   G+    + +   P   A   PPP   PP  P  P  P   RP PAP    A  P
Sbjct: 374 LEALERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAP 433

Query: 379 KPMTGVQKPSPLGPHRQARSISSEGNEVEGESGAAKTKLK 418
              +     +     R    ++     V+G+  A    L+
Sbjct: 434 PARSADPAAAASAGDRWRAFVA----FVKGKKPALGASLE 469

Length = 576

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 47.6 bits (113), Expect = 3e-05
 Identities = 20/52 (38%), Positives = 21/52 (40%)

Query: 341  PPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGP 392
            PP  A P  P    G P  P PP P PP       PPP P     +P P  P
Sbjct: 2592 PPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPP 2643

Length = 3151

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 335 AQSSNEPPTLAAPPPPP--PPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLG 391
           A     PP  A P P P  P   PPPPP  P   PP P    APPP      +  + +G
Sbjct: 58  AAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPPPPAPEPGRIDNAVG 116

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 5/97 (5%)

Query: 323 LTAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMT 382
                   +    Q +  P   A  P   P   P P  P  +P  P      AP P+P+ 
Sbjct: 103 QPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQ----VAPAPQPVH 158

Query: 383 GVQKPSPLGPHRQARSISSEGNEVEGESGAA-KTKLK 418
              +P+           + +   V   +    K K K
Sbjct: 159 SAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDKPKRK 195

Length = 333

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 28/63 (44%), Positives = 28/63 (44%), Gaps = 12/63 (19%)

Query: 342 PTLAAPPPPPPPPG-----PPPPP-------PPPRPRPPAPPKVPAPPPKPMTGVQKPSP 389
           P  A  PPPPP PG     PPPPP       PPP P P  P   P PPP P      P P
Sbjct: 79  PGAAGIPPPPPLPGGAGIPPPPPPLPGGAAVPPPPPLPGGPGVPPPPPPFPGAPGIPPPP 138

Query: 390 LGP 392
            G 
Sbjct: 139 PGM 141

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 47.6 bits (113), Expect = 4e-05
 Identities = 20/62 (32%), Positives = 24/62 (38%)

Query: 326  PHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQ 385
            P    +    Q   +PP    P PPPPPP  P PP  P   P    +     P+P  G  
Sbjct: 2908 PPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGAL 2967

Query: 386  KP 387
             P
Sbjct: 2968 VP 2969

Length = 3151

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 24/53 (45%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 341 PPTLAAPPPPPPPPG----PPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSP 389
           P   A PPPPP P G    PPPPP P  P  P PP     PP P  G   P+ 
Sbjct: 104 PGGAAVPPPPPLPGGPGVPPPPPPFPGAPGIPPPPPGMGSPPPPPFGFGVPAA 156

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 25/56 (44%), Positives = 26/56 (46%), Gaps = 11/56 (19%)

Query: 340 EPPTLAAPPPPP---PPPGPPPPPPPPRPRP---PAPPKVPAPPPKPMTGVQKPSP 389
           EPP    PPP P   P P P P P PP+  P   P P   P P PKP     KP P
Sbjct: 59  EPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKP-----KPKP 109

Length = 246

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 3/66 (4%)

Query: 333 TEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPS---P 389
                   P    A  P P PP    P PP   +PP P     PPP P+          P
Sbjct: 134 AAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRETRVP 193

Query: 390 LGPHRQ 395
           +   RQ
Sbjct: 194 MSRMRQ 199

Length = 418

>gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein

 Score = 42.8 bits (100), Expect = 4e-05
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 348 PPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHRQARSISSE 402
           PP P PP P PPPPP  P P   P V     +     +  S  G  +Q    ++ 
Sbjct: 12  PPAPLPPAPVPPPPPAPPAPVPEPTVKPVNAEAPKIREAQSKRGQKQQKAGGTAS 66

Length = 94

>gnl|CDD|218146 pfam04554, Extensin_2, Extensin-like region

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 337 SSNEPPTLAAPPPPPPP-PGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSP 389
            S  PP     PPPP     PPPP   P  + P PP   +PPP        P P
Sbjct: 4   KSPPPPVKQYSPPPPYYYKSPPPPVKSPVYKSPPPPVYKSPPPPKYVYKSPPPP 57

Length = 57

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.9 bits (112), Expect = 5e-05
 Identities = 18/89 (20%), Positives = 21/89 (23%), Gaps = 1/89 (1%)

Query: 325 APHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGV 384
               G       SS  P   A P  P  P  P  P P      PA       P       
Sbjct: 593 GAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEH 652

Query: 385 QKPSPLGPHRQARSISSEGNEVEGESGAA 413
                  P   +        +  G + AA
Sbjct: 653 HPKHVAVP-DASDGGDGWPAKAGGAAPAA 680

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.8 bits (111), Expect = 5e-05
 Identities = 16/68 (23%), Positives = 22/68 (32%)

Query: 325 APHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGV 384
           AP + ++  +A +       A  P P   P     P    PRP A     AP        
Sbjct: 429 APEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAA 488

Query: 385 QKPSPLGP 392
             P+   P
Sbjct: 489 PAPADDDP 496

Length = 700

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 46.9 bits (111), Expect = 5e-05
 Identities = 17/27 (62%), Positives = 17/27 (62%), Gaps = 3/27 (11%)

Query: 341 PPTLAAPPPPPP---PPGPPPPPPPPR 364
           PP    PPPPPP   PP  PPPPPPP 
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31

Length = 2365

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.6 bits (111), Expect = 5e-05
 Identities = 16/75 (21%), Positives = 18/75 (24%)

Query: 324 TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTG 383
            A       T A+     P  A        P P   P      P APP    P P     
Sbjct: 371 EAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPA 430

Query: 384 VQKPSPLGPHRQARS 398
              P+       A  
Sbjct: 431 AAAPAAAPAAAPAAV 445

Length = 618

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 333 TEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGP 392
              ++ +       P    PP  P  P P P   P   P V  P PKP    +  +P  P
Sbjct: 73  EAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKP-VEKPKPKPKPQQKVEAPPAP 131

Length = 226

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 45.8 bits (109), Expect = 6e-05
 Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 324 TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPP--PPPRPRPPAPPKVPAPPPKPM 381
           ++     S          P+ ++ PP P       PP  P     P  PP   APPP P+
Sbjct: 189 SSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPV 248

Query: 382 TGVQKPS 388
             V   S
Sbjct: 249 QQVPPLS 255

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional

 Score = 46.1 bits (109), Expect = 6e-05
 Identities = 18/73 (24%), Positives = 24/73 (32%), Gaps = 2/73 (2%)

Query: 325 APHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRP-RPPAPPKVPAPPPKPMTG 383
            P      T +  +   P+    PP    P P      P+    P     PAPP  P  G
Sbjct: 207 TPRPTPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPT-PGGG 265

Query: 384 VQKPSPLGPHRQA 396
              P+   P  +A
Sbjct: 266 EAPPANATPAPEA 278

Length = 401

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.1 bits (110), Expect = 7e-05
 Identities = 30/92 (32%), Positives = 37/92 (40%), Gaps = 2/92 (2%)

Query: 334 EAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPH 393
           E+QS +   T   PPPP   P PP P PP  P+P A    P PPP P T   + S   P 
Sbjct: 511 ESQSGSASNTAKTPPPPQKSPPPPAPTPPL-PQPTATAPPPTPPPPPPT-ATQASSNAPA 568

Query: 394 RQARSISSEGNEVEGESGAAKTKLKPFFWDKV 425
           +     S      E  + +      P   DK 
Sbjct: 569 QIPADSSPPPPIPEEPTPSPTKDSSPEEIDKA 600

Length = 620

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 46.2 bits (109), Expect = 7e-05
 Identities = 20/53 (37%), Positives = 22/53 (41%)

Query: 342 PTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHR 394
           P    PPP  P P  PP  PP R + PA     A PP    G  +P    P R
Sbjct: 691 PGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGR 743

Length = 991

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 46.1 bits (109), Expect = 7e-05
 Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 5/73 (6%)

Query: 323 LTAPHSGSSMTEAQSSNEPPTLAA-----PPPPPPPPGPPPPPPPPRPRPPAPPKVPAPP 377
           L     GSS     +S+ P          P  P P P  P  PP   P PP PP +    
Sbjct: 194 LPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASIPAPPIPPVIQYVA 253

Query: 378 PKPMTGVQKPSPL 390
           P P+   Q   P+
Sbjct: 254 PPPVPPPQPIIPI 266

Length = 582

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 46.5 bits (110), Expect = 8e-05
 Identities = 22/73 (30%), Positives = 25/73 (34%), Gaps = 9/73 (12%)

Query: 333  TEAQSSNEPPTLAAPPPPPPPPGP---------PPPPPPPRPRPPAPPKVPAPPPKPMTG 383
              A     P   AAP PP  P GP           PP    P  PAPP  PA  P     
Sbjct: 2725 PAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLT 2784

Query: 384  VQKPSPLGPHRQA 396
                + L   R++
Sbjct: 2785 RPAVASLSESRES 2797

Length = 3151

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 324 TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPP--PPPPPRPRPPAPPKVPAPPPKPM 381
           T  H  +    AQ   +P  L  P P  P    PP  P PP  P+PP PP  P  P  P+
Sbjct: 85  TQHHQPNLPQPAQQPFQPQPLQPPQPQQPMQPQPPVHPIPPLPPQPPLPPMFPMQPLPPL 144

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.0 bits (109), Expect = 9e-05
 Identities = 16/64 (25%), Positives = 17/64 (26%), Gaps = 4/64 (6%)

Query: 321 RFLTAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAP----PKVPAP 376
           R   A  +     E       P    P P  PP    P   P   R   P    PK   P
Sbjct: 388 RPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPP 447

Query: 377 PPKP 380
            P  
Sbjct: 448 APPK 451

Length = 585

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 46.1 bits (109), Expect = 9e-05
 Identities = 16/26 (61%), Positives = 17/26 (65%)

Query: 352 PPPGPPPPPPPPRPRPPAPPKVPAPP 377
           PP  PPPPPPPP   PP+ P  P PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30

Length = 2365

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.9 bits (109), Expect = 9e-05
 Identities = 18/93 (19%), Positives = 24/93 (25%), Gaps = 2/93 (2%)

Query: 323 LTAPHSGSSMTEAQSSNEPPTLAAPPPPP--PPPGPPPPPPPPRPRPPAPPKVPAPPPKP 380
              P + +      +        A  P      P  PP   PP P        PA  P  
Sbjct: 381 PARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAA 440

Query: 381 MTGVQKPSPLGPHRQARSISSEGNEVEGESGAA 413
                  +P  P + A    +    V  E   A
Sbjct: 441 APAAVALAPAPPAQAAPETVAIPVRVAPEPAVA 473

Length = 618

>gnl|CDD|220260 pfam09483, HpaP, Type III secretion protein (HpaP)

 Score = 44.0 bits (104), Expect = 9e-05
 Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 3/83 (3%)

Query: 324 TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTG 383
            AP +     +          A PP  P PPGP     P  P  P     P  PP+   G
Sbjct: 5   AAPRAARRSFDYARLMRRAARAGPPGTPAPPGPAEDAHPEFPERPRDAPAPPAPPRATDG 64

Query: 384 VQKPSPL--GPH-RQARSISSEG 403
            + P PL        AR+ ++  
Sbjct: 65  DRDPQPLADALAEAMARAAAARF 87

This entry represents proteins encoded by genes which are always found in type III secretion operons, although their function in the processes of secretion and virulence is unclear. Hpa stands for Hrp-associated gene, where Hrp stands for hypersensitivity response and virulence. see also PMID:18584024. Length = 185

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 42.9 bits (101), Expect = 9e-05
 Identities = 14/53 (26%), Positives = 15/53 (28%)

Query: 336 QSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPS 388
                P  +  P    P P  P PPP   P  P  P    P P        P 
Sbjct: 83  TPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPP 135

Length = 141

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 45.3 bits (107), Expect = 1e-04
 Identities = 31/106 (29%), Positives = 35/106 (33%), Gaps = 26/106 (24%)

Query: 344  LAAPPPPPPPPGPPP--------------------------PPPPPRPRPPAPPKVPAPP 377
            LA PPPPPP P P P                          P PP  P  PA P  PA P
Sbjct: 2698 LADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARP 2757

Query: 378  PKPMTGVQKPSPLGPHRQARSISSEGNEVEGESGAAKTKLKPFFWD 423
             +P T    P+P  P   A             S +   +  P  WD
Sbjct: 2758 ARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWD 2803

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.4 bits (108), Expect = 1e-04
 Identities = 19/95 (20%), Positives = 25/95 (26%), Gaps = 1/95 (1%)

Query: 321 RFLTAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKP 380
           R L       +   A  S      AA P P          P P   P   P  PAP P P
Sbjct: 383 RRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAP-APAPAPAP 441

Query: 381 MTGVQKPSPLGPHRQARSISSEGNEVEGESGAAKT 415
            +        G      + +         + A + 
Sbjct: 442 PSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEP 476

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.6 bits (108), Expect = 1e-04
 Identities = 22/80 (27%), Positives = 28/80 (35%), Gaps = 5/80 (6%)

Query: 324 TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTG 383
             P + ++   AQ     P  AAP    P P  PP  P   P   A  +  A  P   + 
Sbjct: 372 AGPATAAAAPVAQ---PAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRS- 427

Query: 384 VQKPSPLGPHRQARSISSEG 403
              P  L   RQA +    G
Sbjct: 428 -PAPEALAAARQASARGPGG 446

Length = 700

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 8/85 (9%)

Query: 318 LSFRFLTAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPP 377
           L+F+    P + +   EA +  E  T A P    P   P            AP    + P
Sbjct: 362 LAFK----PAAAA---EAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAP 414

Query: 378 PKPMTGVQKPSPLGPHRQARSISSE 402
             P      P+P+     A   ++ 
Sbjct: 415 AAPPAAAP-PAPVAAPAAAAPAAAP 438

Length = 618

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 332 MTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSP 389
                 + EP     PP   P P P  P  PP P PP P + P P  KP     KP P
Sbjct: 47  KVLEAPTEEPQPEPEPPEEQPKP-PTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKP 103

Length = 244

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 333 TEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQ-KPSPLG 391
            E       P      PP P P  P   P P  +P  P   P P PKP   V+ +P P  
Sbjct: 60  PEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKK 119

Query: 392 PH 393
           P 
Sbjct: 120 PP 121

Length = 244

>gnl|CDD|165539 PHA03282, PHA03282, envelope glycoprotein E; Provisional

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 8/53 (15%)

Query: 340 EPPTLAAPPPPPPPP--------GPPPPPPPPRPRPPAPPKVPAPPPKPMTGV 384
            P  +  PP   PPP        G P  P PP   PPAP   P      + GV
Sbjct: 161 GPRPVPTPPGGTPPPDDDEGDEAGAPATPAPPLHPPPAPHPHPIAEVAHVRGV 213

Length = 540

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 322 FLTAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPP------KVPA 375
           F + P   SS +++     P +  +  PPP P  P  P PPP P  P PP       +  
Sbjct: 197 FPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLST 256

Query: 376 PPPKPMTGVQKPSPLGPHR 394
             P P +    P+P+G   
Sbjct: 257 AKPTPPSASATPAPIGGIT 275

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.4 bits (108), Expect = 2e-04
 Identities = 16/86 (18%), Positives = 19/86 (22%), Gaps = 3/86 (3%)

Query: 334 EAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMT---GVQKPSPL 390
           E           A  P    P      P   P P A     A  P P         P+P 
Sbjct: 379 ERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPA 438

Query: 391 GPHRQARSISSEGNEVEGESGAAKTK 416
                    +  G        AA + 
Sbjct: 439 PAPPSPAGNAPAGGAPSPPPAAAPSA 464

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.0 bits (107), Expect = 2e-04
 Identities = 19/87 (21%), Positives = 22/87 (25%), Gaps = 1/87 (1%)

Query: 324 TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTG 383
              H             P       P  PPP P P  P            PAP   P  G
Sbjct: 653 HPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAG 712

Query: 384 VQKPSPLGPHRQARSISSEGNEVEGES 410
            Q   P     QA   +S  +    + 
Sbjct: 713 -QADDPAAQPPQAAQGASAPSPAADDP 738

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.0 bits (107), Expect = 2e-04
 Identities = 53/310 (17%), Positives = 80/310 (25%), Gaps = 61/310 (19%)

Query: 134 APRRYLAAELFAERSTKRASLPPVSDSIALPPISVSIATPAPSRQRKGAPASSPSPKPR- 192
           AP    AA   A      A+  P       P                  PA++PS +P  
Sbjct: 409 APAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAP 468

Query: 193 FHSPPTSPNKRPSPSPQPTAKKKAPPAVIVKNQPEKDQDDDVRHKEIIIAVVATAVTTFA 252
             +    P   P+P+P       A PA           DD    +E    ++A       
Sbjct: 469 APAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRERWPEILAA------ 522

Query: 253 LVALLFLCCLKSRSKRIDPVKGQNDDRPLLNSSLSAGMHLSSSVLLLAPYIFLFGSKTYN 312
                    +  RS++   +            +   G+      L+L             
Sbjct: 523 ---------VPKRSRKTWAILLPE--------ATVLGVR--GDTLVLG------------ 551

Query: 313 FTSWNLSFRFLTAPHSGSSMT------------EAQSSNEPPTLAAPPPPPP-------- 352
           F++  L+ RF +  ++   +T            EA     P       PP P        
Sbjct: 552 FSTGGLARRFASPGNAEVLVTALAEELGGDWQVEAVVGPAPGAAGGEGPPAPASSGPPEE 611

Query: 353 ---PPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHRQARSISSEGNEVEGE 409
              P  P  P  P  P P      PA                P   A   +S+G +    
Sbjct: 612 AARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPA 671

Query: 410 SGAAKTKLKP 419
                    P
Sbjct: 672 KAGGAAPAAP 681

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 45.2 bits (107), Expect = 2e-04
 Identities = 26/123 (21%), Positives = 34/123 (27%), Gaps = 9/123 (7%)

Query: 324 TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVP----APPPK 379
            A  S  +     S   P   A  P  PP   PP  PP      P     P    A  P 
Sbjct: 165 DAASSRQAALPLSS---PEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPA 221

Query: 380 PMTGVQKPSPLGPHRQARSISSEGNEVEGESGAAKTKLKPFFWDKVLASPDHAMVWHEIS 439
           P  G  + +       +   SS  +   G     +  L       +      A  W+  S
Sbjct: 222 PAPG--RSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPS 279

Query: 440 SGS 442
           S  
Sbjct: 280 SRP 282

Length = 1352

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 17/48 (35%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 324 TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPP 371
           T P   +S         PP   A    PPPP  P  PP   P P AP 
Sbjct: 57  TTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAE-PEPEAPA 103

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 335 AQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMT 382
           A ++  PP    PPPP       PPPP     PPA P+  AP    +T
Sbjct: 65  AITNGGPP----PPPPARAEAASPPPPEAPAEPPAEPEPEAPAENTVT 108

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 16/55 (29%), Positives = 18/55 (32%)

Query: 335 AQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSP 389
             +      L A      PP   PPPP     P   P  P P    M   Q+P P
Sbjct: 50  PGAYVHLEPLPAYGQYAAPPPYGPPPPYYPAPPGVYPTPPPPNSGYMADPQEPPP 104

The WWbp domain is characterized by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). This is the WW-domain binding protein WWbp via PY and PY_like motifs. The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis. This domain lies just downstream of the GRAM (pfam02893) in many members. Length = 111

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 14/58 (24%), Positives = 19/58 (32%)

Query: 331 SMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPS 388
              +  ++   P    PP     P  P  P P R +P AP       PK     +K  
Sbjct: 126 QQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKEKEQ 183

Length = 256

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 44.5 bits (105), Expect = 3e-04
 Identities = 29/92 (31%), Positives = 36/92 (39%), Gaps = 15/92 (16%)

Query: 324  TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPP--PPRPRP----------PAPP 371
            ++P        A+ +    T  A PPPPPP   P P       P P          PA P
Sbjct: 2677 SSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALP 2736

Query: 372  KVPAPPPKPMTGVQKPSPLGPHRQARSISSEG 403
              PAPP  P       +P GP R AR  ++ G
Sbjct: 2737 AAPAPPAVPAGPA---TPGGPARPARPPTTAG 2765

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 44.5 bits (105), Expect = 3e-04
 Identities = 22/72 (30%), Positives = 25/72 (34%), Gaps = 17/72 (23%)

Query: 338  SNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAP-----------------PKVPAPPPKP 380
            + +PP    P  PP  P    PPP P PRP  P                 P+ P      
Sbjct: 2548 AGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGD 2607

Query: 381  MTGVQKPSPLGP 392
              G   PSPL P
Sbjct: 2608 PRGPAPPSPLPP 2619

Length = 3151

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 324 TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPP-KVPAPPPKP 380
               +   ++       P   AAPPP P PP P P  PP    PPAP  K P PPP+P
Sbjct: 49  PVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPSPLAPPAPARKPPLPPPRP 106

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.2 bits (105), Expect = 3e-04
 Identities = 21/78 (26%), Positives = 25/78 (32%)

Query: 328 SGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKP 387
           S ++ T       PP  A  PP P P    PPP PP P P A       P +       P
Sbjct: 518 SNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPP 577

Query: 388 SPLGPHRQARSISSEGNE 405
            P+              E
Sbjct: 578 PPIPEEPTPSPTKDSSPE 595

Length = 620

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 44.4 bits (105), Expect = 3e-04
 Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 1/91 (1%)

Query: 324 TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTG 383
           T   +  S +    S      A+P     P  P P  P P P  P P   P  P   ++ 
Sbjct: 77  TEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSE 136

Query: 384 VQKPS-PLGPHRQARSISSEGNEVEGESGAA 413
           + +P    GP   A   ++  +     S AA
Sbjct: 137 MLRPVGSPGPPPAASPPAAGASPAAVASDAA 167

Length = 1352

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 44.2 bits (104), Expect = 3e-04
 Identities = 21/38 (55%), Positives = 22/38 (57%), Gaps = 6/38 (15%)

Query: 353 PPGPPPPPPPPRPRPPA--PPKVPAPPPKPMTGVQKPS 388
           PPG PPPPPP    PP   PP  P PPP P   V+K S
Sbjct: 5   PPGNPPPPPP----PPGFEPPSQPPPPPPPGVNVKKRS 38

Length = 2365

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 17/51 (33%), Positives = 21/51 (41%)

Query: 324 TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVP 374
             P +  S   A  +  P +  A PP P    P P   PP   PP PP+ P
Sbjct: 91  VTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPPRAP 141

Length = 141

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 44.2 bits (104), Expect = 3e-04
 Identities = 15/46 (32%), Positives = 18/46 (39%)

Query: 334 EAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPK 379
           EA + +E  +  AP P    P   P PP P P P       A  P 
Sbjct: 214 EAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAPV 259

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 44.4 bits (105), Expect = 3e-04
 Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 320 FRFLTAPHSGSSM--TEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPP 377
            +FL AP    +      Q   +PP L  P  P      PPPPP P  +   PP+  A P
Sbjct: 217 QQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQP 276

Query: 378 PKPMTGVQKPSP 389
           P        P  
Sbjct: 277 PPQNQPTPHPGL 288

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score = 44.1 bits (104), Expect = 3e-04
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 340 EPPTLAAPPPPPPPPGPPPPPP--PPRPRPPAPPKVPAPPPKPMTG 383
           +P + AAP  P   P PPPP      +P     PK   P   P +G
Sbjct: 201 KPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSG 246

Length = 539

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 43.8 bits (104), Expect = 3e-04
 Identities = 8/48 (16%), Positives = 14/48 (29%)

Query: 334 EAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPM 381
           E +S+++     A         P         +    P  PA P   +
Sbjct: 80  EGESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEV 127

Length = 464

>gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.1 bits (104), Expect = 3e-04
 Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 1/37 (2%)

Query: 344 LAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKP 380
           L   P   P P    P P  +P  P P  V AP P  
Sbjct: 392 LHNAPQAAPAPSAAAPEPKHQP-APEPRPVLAPTPAS 427

Length = 584

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 43.0 bits (101), Expect = 4e-04
 Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 3/50 (6%)

Query: 343 TLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGP 392
            +A P      P PPPPPP      PAP    APPP P            
Sbjct: 30  AIALPATANADPAPPPPPPSTAAAAPAP---AAPPPPPPPAAPPAPQPDD 76

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 4e-04
 Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 342 PTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPP 378
                    PPP   PP PP   P PP   + PA PP
Sbjct: 905 APGGDAASAPPPGAGPPAPPQAVP-PPRTTQPPAAPP 940

Length = 991

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 18/51 (35%), Positives = 21/51 (41%)

Query: 342 PTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGP 392
           PT    P  P P   P  P P +P  P  P  P PP  P+  +    PL P
Sbjct: 84  PTQHHQPNLPQPAQQPFQPQPLQPPQPQQPMQPQPPVHPIPPLPPQPPLPP 134

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 27/60 (45%), Positives = 31/60 (51%), Gaps = 10/60 (16%)

Query: 341 PPTLAAPPPPPPPPGPPPPPPPPRPR----PPAPP-----KVPAPPPKP-MTGVQKPSPL 390
           P  +  PPPPP P G   PPPPP P     PP PP      +P PPP P + G+  P PL
Sbjct: 7   PGGVGIPPPPPLPGGVCIPPPPPLPGGTGIPPPPPLPGGAAIPPPPPLPGVAGIPPPPPL 66

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|218146 pfam04554, Extensin_2, Extensin-like region

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 3/56 (5%)

Query: 326 PHSGSSMTEAQSSNEPPTLAAPPPPPPPPG---PPPPPPPPRPRPPAPPKVPAPPP 378
            H  S     +  + PP      PPPP        PPPP  +  PP      +PPP
Sbjct: 1   YHYKSPPPPVKQYSPPPPYYYKSPPPPVKSPVYKSPPPPVYKSPPPPKYVYKSPPP 56

Length = 57

>gnl|CDD|225499 COG2948, VirB10, Type IV secretory pathway, VirB10 components [Intracellular trafficking and secretion]

 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 24/148 (16%), Positives = 38/148 (25%), Gaps = 3/148 (2%)

Query: 275 QNDDRPLLNSSLSAGMHLSSSVLLLAPYIFLFGSKTYNFTSWNLSFRFLTAPHSGS-SMT 333
            +            G  +  S  LL   + +       F    L        ++   S  
Sbjct: 3   PDSASRPDRLRARPGRVVRVSRALLIAIVAVGRIALVGFALIALQGEKKRINNTQPPSNV 62

Query: 334 EAQSSNEPPTLAAPPPPPPPPGPPPPP-PPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGP 392
           E  +   PP    PP PPP P     P  P +    A  + P             S +  
Sbjct: 63  ERGTPPLPPLPDDPPLPPPLPVDLGAPVLPDQQVEEAKDQ-PRRLRAAELAATSGSRVES 121

Query: 393 HRQARSISSEGNEVEGESGAAKTKLKPF 420
            R    + +        + A     +P 
Sbjct: 122 DRAVGRVRAALANAAPAAAAPPPAGQPS 149

Length = 360

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 6e-04
 Identities = 27/129 (20%), Positives = 40/129 (31%), Gaps = 18/129 (13%)

Query: 325 APHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGV 384
           A    S+   A  S    + AA P  P     P   PP     P    VP  PP      
Sbjct: 388 AAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAA-VPVNPPSTAPQA 446

Query: 385 QKPSPLGPHRQAR--SISSEG--------NEVEGESG---AAKTKLKPFFWDKVLASPDH 431
            +P+     ++     +SS G         + E  +G    A T  +   + +     D 
Sbjct: 447 VRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGNIKEAPTGTQKEIFTE----EDL 502

Query: 432 AMVWHEISS 440
              W E + 
Sbjct: 503 QYYWQEFAG 511

Length = 614

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.9 bits (101), Expect = 6e-04
 Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 7/74 (9%)

Query: 324 TAPHSGSSMTEAQSSN--EPP---TLAAPPPPPPPPGPPPPPPPPRPR-PPAP-PKVPAP 376
            AP + +     Q  N  E       +AP       G P P   PRPR PPAP P   A 
Sbjct: 353 VAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPAPEPARSAE 412

Query: 377 PPKPMTGVQKPSPL 390
            P  +     P+ L
Sbjct: 413 APPLVAPAAAPAGL 426

Length = 504

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 336 QSSNEPPTLAAPPPPPPPPGPP-PPPPPPRPRPPAPPKVPAPPPKP 380
               + P    PP  P PP PP PP PP  P  P PP +P  P + 
Sbjct: 107 PPQPQQPMQPQPPVHPIPPLPPQPPLPPMFPMQPLPPLLPDLPLEA 152

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.1 bits (102), Expect = 7e-04
 Identities = 20/93 (21%), Positives = 28/93 (30%), Gaps = 4/93 (4%)

Query: 325 APHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPP----PPRPRPPAPPKVPAPPPKP 380
           A     +     ++  P   AAP P P P   P PP      P    P+PP   AP  +P
Sbjct: 407 AAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQP 466

Query: 381 MTGVQKPSPLGPHRQARSISSEGNEVEGESGAA 413
                              ++        + AA
Sbjct: 467 APAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAA 499

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.9 bits (101), Expect = 7e-04
 Identities = 19/61 (31%), Positives = 20/61 (32%), Gaps = 7/61 (11%)

Query: 336 QSSNEPPTLAAPPPPPPPPGP----PPPPPPPRPRP---PAPPKVPAPPPKPMTGVQKPS 388
           Q+S   P  A  P P P   P     P    PRP      A P   AP   P      P 
Sbjct: 438 QASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPP 497

Query: 389 P 389
           P
Sbjct: 498 P 498

Length = 700

>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 13/46 (28%), Positives = 13/46 (28%)

Query: 347 PPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGP 392
            P P       PPP  P P     P    P P P        P  P
Sbjct: 57  EPLPAYGQYAAPPPYGPPPPYYPAPPGVYPTPPPPNSGYMADPQEP 102

The WWbp domain is characterized by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). This is the WW-domain binding protein WWbp via PY and PY_like motifs. The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis. This domain lies just downstream of the GRAM (pfam02893) in many members. Length = 111

>gnl|CDD|114709 pfam06003, SMN, Survival motor neuron protein (SMN)

 Score = 41.9 bits (98), Expect = 7e-04
 Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 11/43 (25%)

Query: 347 PPPPPPPPG-----------PPPPPPPPRPRPPAPPKVPAPPP 378
           P PPPPPPG           PP     P P P  PP +P PPP
Sbjct: 174 PGPPPPPPGFGRHGEKPSGWPPFLSGWPPPFPLGPPMIPPPPP 216

This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs. Length = 264

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 28/75 (37%), Positives = 30/75 (40%), Gaps = 11/75 (14%)

Query: 337 SSNEPPTLAAPPPPPPPPGPP-------PPPPPPRPRPPAPPKVPAPPPKPMTGVQKP-- 387
           SS   P  +A P  PPP G P       PPP       P P +  APPP P   V  P  
Sbjct: 26  SSCFSPPESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAG 85

Query: 388 --SPLGPHRQARSIS 400
             SPL P   AR   
Sbjct: 86  PPSPLAPPAPARKPP 100

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 43.0 bits (101), Expect = 8e-04
 Identities = 18/32 (56%), Positives = 21/32 (65%), Gaps = 2/32 (6%)

Query: 344 LAAPPP--PPPPPGPPPPPPPPRPRPPAPPKV 373
           +A+ PP  PPPPP PP   PP +P PP PP V
Sbjct: 1   MASLPPGNPPPPPPPPGFEPPSQPPPPPPPGV 32

Length = 2365

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.7 bits (101), Expect = 9e-04
 Identities = 18/84 (21%), Positives = 22/84 (26%), Gaps = 2/84 (2%)

Query: 325 APHSGSSMTEAQSSNEPPTLAAP--PPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMT 382
                 +             AAP  PPP P P  P  P    P  PAP     PP     
Sbjct: 656 HVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQAD 715

Query: 383 GVQKPSPLGPHRQARSISSEGNEV 406
                 P      +    +  + V
Sbjct: 716 DPAAQPPQAAQGASAPSPAADDPV 739

Length = 824

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.3 bits (100), Expect = 0.001
 Identities = 20/65 (30%), Positives = 23/65 (35%)

Query: 328 SGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKP 387
           S S      +   PP   +PPPP P P  P P     P  P PP   A         Q P
Sbjct: 512 SQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIP 571

Query: 388 SPLGP 392
           +   P
Sbjct: 572 ADSSP 576

Length = 620

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 42.2 bits (99), Expect = 0.001
 Identities = 17/58 (29%), Positives = 21/58 (36%)

Query: 335 AQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGP 392
            Q +  PP+ AA P PPPP     P         A P+   P        +KP P   
Sbjct: 15  EQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASL 72

Length = 475

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 42.4 bits (99), Expect = 0.001
 Identities = 20/63 (31%), Positives = 23/63 (36%)

Query: 341 PPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHRQARSIS 400
           PP  A  P        PP   P R RPPA     A PP    G  +P    P R     +
Sbjct: 710 PPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAA 769

Query: 401 SEG 403
           + G
Sbjct: 770 APG 772

Length = 991

>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 18/38 (47%), Positives = 19/38 (50%)

Query: 341 PPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPP 378
           PP    PP  P PPG  P PPPP     A P+ P PP 
Sbjct: 69  PPYGPPPPYYPAPPGVYPTPPPPNSGYMADPQEPPPPY 106

The WWbp domain is characterized by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). This is the WW-domain binding protein WWbp via PY and PY_like motifs. The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis. This domain lies just downstream of the GRAM (pfam02893) in many members. Length = 111

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 42.4 bits (100), Expect = 0.001
 Identities = 19/69 (27%), Positives = 25/69 (36%)

Query: 325 APHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGV 384
            P       + Q     P+ A   PP PP  P  PPP  +P+ P   +   PPP      
Sbjct: 206 PPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQ 265

Query: 385 QKPSPLGPH 393
           Q+  P    
Sbjct: 266 QQQPPQPQA 274

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 42.2 bits (100), Expect = 0.001
 Identities = 11/49 (22%), Positives = 15/49 (30%)

Query: 329 GSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPP 377
           G S ++A ++      AA   P            P P  PA P      
Sbjct: 81  GESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAA 129

Length = 464

>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional

 Score = 42.2 bits (99), Expect = 0.001
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 326 PHSGSSMT--EAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPA 375
           P +G   T     +++ PP  A PP PP    PP    PP   P  P   PA
Sbjct: 897 PGTGRVATAPGGDAASAPPPGAGPPAPPQAVPPPRTTQPPAAPPRGPDVPPA 948

Length = 991

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 42.5 bits (100), Expect = 0.001
 Identities = 16/42 (38%), Positives = 17/42 (40%)

Query: 346 APPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKP 387
           A   P P P PPPPPPPP P  P           P  G +  
Sbjct: 263 ATRLPEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETD 304

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 42.5 bits (100), Expect = 0.001
 Identities = 17/44 (38%), Positives = 17/44 (38%)

Query: 347 PPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPL 390
           P P P PP PPPPP PP P           P       Q P  L
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEEL 310

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|223079 PHA03419, PHA03419, E4 protein; Provisional

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 21/76 (27%), Positives = 24/76 (31%)

Query: 334 EAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPH 393
           E      PPT   P   PPP  P P  PP             PPP      +K       
Sbjct: 46  ETGYPFCPPTTPHPSSQPPPCPPSPGHPPQTNDTHEKDLALQPPPGGKKKEKKKKETEKP 105

Query: 394 RQARSISSEGNEVEGE 409
            Q      +G E +GE
Sbjct: 106 AQGGEKPDQGPEAKGE 121

Length = 200

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 42.0 bits (98), Expect = 0.001
 Identities = 12/55 (21%), Positives = 17/55 (30%)

Query: 325 APHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPK 379
           AP      T    + +P        P   P   P  P  +P P  P + P    +
Sbjct: 200 APKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQ 254

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 42.3 bits (100), Expect = 0.001
 Identities = 13/34 (38%), Positives = 14/34 (41%)

Query: 345 AAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPP 378
           A P PP   P PPPPPP     PP   +      
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAE 293

Length = 584

>gnl|CDD|221818 pfam12868, DUF3824, Domain of unknwon function (DUF3824)

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 20/68 (29%), Positives = 21/68 (30%), Gaps = 12/68 (17%)

Query: 337 SSNEPPTLAAPPPP------------PPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGV 384
              +P      PP             PPPPG  P PPP       P   P PP       
Sbjct: 52  EPYDPTPYPPSPPVSDPRYYPNSNYFPPPPGSTPVPPPGPQPGYNPADYPPPPGAVPPPQ 111

Query: 385 QKPSPLGP 392
             P P GP
Sbjct: 112 NYPYPPGP 119

This is a repeating domain found in fungal proteins. It is proline-rich, and the function is not known. Length = 135

>gnl|CDD|113398 pfam04625, DEC-1_N, DEC-1 protein, N-terminal region

 Score = 41.7 bits (97), Expect = 0.001
 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 4/67 (5%)

Query: 325 APHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGV 384
            P  GS + +  +    P L     P P P P P   P    P AP      P  P+   
Sbjct: 83  GPQVGSFLAQLPAMPSMPGLLGAAAPVPAPAPAPAAAP----PAAPAPAADTPAAPIPDA 138

Query: 385 QKPSPLG 391
            +P+ LG
Sbjct: 139 VQPAILG 145

The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). Length = 407

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 19/57 (33%), Positives = 24/57 (42%)

Query: 333 TEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSP 389
            +AQS+ +   L     P  P   PP  P P      PP   APP +   G  +PSP
Sbjct: 168 PQAQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPYSGAPPSQQFYGPPQPSP 224

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.8 bits (98), Expect = 0.002
 Identities = 48/269 (17%), Positives = 61/269 (22%), Gaps = 52/269 (19%)

Query: 147  RSTKRASLPPVSDSIALPPISVSIATPAPSRQRKGAPASSPSPKPRFHSP----PTSPNK 202
            R+ + +S P      A  P   S+ + A        P  +P P P         P  P  
Sbjct: 2672 RAAQASSPPQRPRRRAARPTVGSLTSLA----DPPPPPPTPEPAPHALVSATPLPPGPAA 2727

Query: 203  RPSPSPQPTAKKKAPPAVIVKNQPEKDQDDDVRHKEIIIAVVATAVTTFALVALLFLCCL 262
                SP   A    P        P               A  A   TT    A       
Sbjct: 2728 ARQASPALPAAPAPPAVPAGPATPGGP------------ARPARPPTTAGPPAPAPPAAP 2775

Query: 263  KSRSKRIDPVKGQNDDRPLLNSSLSAGMHLSSSVLLLAPYIFLFGSKTYNFTSWNLSFRF 322
             +   R               S  S          +LAP                 +   
Sbjct: 2776 AAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAP---------------AAALPP 2820

Query: 323  LTAPHSGSSMTEAQSSNEPPTLAAPPPPP----------------PPPGPPPPPPPPRPR 366
              +P        +     PP    PPPP                 PP   P   P    R
Sbjct: 2821 AASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPAR 2880

Query: 367  PPAPPKVPAPPPKPMTGVQKPSPLGPHRQ 395
            PP   ++  P     T      P  P R 
Sbjct: 2881 PPV-RRLARPAVSRSTESFALPPDQPERP 2908

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.5 bits (97), Expect = 0.002
 Identities = 23/82 (28%), Positives = 26/82 (31%), Gaps = 20/82 (24%)

Query: 334 EAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRP---------RPPAPPKVPAPPPKPMTG- 383
            A  + E    A  PPPPP    P     P            P A P  P PPP    G 
Sbjct: 264 GADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPDPPPPAPAGD 323

Query: 384 ----------VQKPSPLGPHRQ 395
                     ++  SPL   RQ
Sbjct: 324 AEEEDDEDGAMEVVSPLPRPRQ 345

Length = 3151

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 18/88 (20%), Positives = 27/88 (30%), Gaps = 2/88 (2%)

Query: 322 FLTAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPM 381
           F       +S + +   +  P    P  P PP  P  P     P  P+  +   PPP P 
Sbjct: 172 FPGEDADPASASPSDPPSSSP--GVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPE 229

Query: 382 TGVQKPSPLGPHRQARSISSEGNEVEGE 409
           +      P GP         +   +   
Sbjct: 230 SPTNPSPPPGPAAPPPPPVQQVPPLSTA 257

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.5 bits (98), Expect = 0.002
 Identities = 17/70 (24%), Positives = 22/70 (31%), Gaps = 1/70 (1%)

Query: 323 LTAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMT 382
           L +         +  +N  P     PPP P   P  P        P+PP   A PP P+ 
Sbjct: 360 LPSAFISEIANASAPANPTPAPNPSPPPAPIQ-PSAPKTKQAATTPSPPPAKASPPIPVP 418

Query: 383 GVQKPSPLGP 392
                    P
Sbjct: 419 AEPTEPSPTP 428

Length = 620

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 28/115 (24%), Positives = 40/115 (34%), Gaps = 8/115 (6%)

Query: 115 ASFTHWSIEYAQLLVSWLNAPRRYLAAELFAERSTKRASLPPVSDSIALPPISVSIATPA 174
            + T W   ++QL           L  EL    +   A L PV    A  P   + A P+
Sbjct: 325 EALTKWVKAFSQLDFQLRTTSYGQLPLEL----AVIEALLVPVP---APQPAKPTAAAPS 377

Query: 175 PSRQRKGAPASSPSPKPRFHSPPTSPNKRPSPSPQPTAKKKAPPAVIVKNQPEKD 229
           P R    AP++ P      + PP  P +  +  P    +  APP         K 
Sbjct: 378 PVRP-TPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKL 431

Length = 585

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 41.4 bits (97), Expect = 0.002
 Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 8/62 (12%)

Query: 329 GSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAP----PKVPAP----PPKP 380
           G    E  +   P   AAP PPPP     P      P   AP    PK   P     PKP
Sbjct: 10  GKGEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKP 69

Query: 381 MT 382
            +
Sbjct: 70  AS 71

Length = 475

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 41.7 bits (98), Expect = 0.002
 Identities = 17/50 (34%), Positives = 19/50 (38%)

Query: 347 PPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHRQA 396
           PP P   PG   PP      PPA    P P P P   +    P GP  + 
Sbjct: 876 PPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPPGGPDPRG 925

Length = 1352

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 29/63 (46%), Positives = 30/63 (47%), Gaps = 12/63 (19%)

Query: 342 PTLAAPPPPPPPPG----PPPPPPP-----PRPRPPAPPKVPAPPPKPM---TGVQKPSP 389
           P   A PPPPP PG    PPPPP P     P P PP P     PPP P+    GV  P P
Sbjct: 67  PGATAIPPPPPLPGAAGIPPPPPLPGGAGIPPPPPPLPGGAAVPPPPPLPGGPGVPPPPP 126

Query: 390 LGP 392
             P
Sbjct: 127 PFP 129

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 27/60 (45%), Positives = 30/60 (50%), Gaps = 10/60 (16%)

Query: 341 PPTLAAPPPPPPPPGPPPPPPPPRPR----PPAPP-----KVPAPPPKP-MTGVQKPSPL 390
           P  +  PPPPP P G   PPPPP P     PP PP      +P PPP P  T +  P PL
Sbjct: 19  PGGVCIPPPPPLPGGTGIPPPPPLPGGAAIPPPPPLPGVAGIPPPPPLPGATAIPPPPPL 78

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein

 Score = 38.2 bits (88), Expect = 0.002
 Identities = 17/29 (58%), Positives = 18/29 (62%)

Query: 352 PPPGPPPPPPPPRPRPPAPPKVPAPPPKP 380
           P P  PP P PP P PP PP  PAP P+P
Sbjct: 7   PKPPEPPAPLPPAPVPPPPPAPPAPVPEP 35

Length = 94

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 17/91 (18%), Positives = 24/91 (26%), Gaps = 14/91 (15%)

Query: 325 APHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPP--------------PPPRPRPPAP 370
           A    +    A +    P  AA  P  PP   PP P                P     AP
Sbjct: 390 AAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP 449

Query: 371 PKVPAPPPKPMTGVQKPSPLGPHRQARSISS 401
                  P+ +    + +P      A    +
Sbjct: 450 APPAQAAPETVAIPVRVAPEPAVASAAPAPA 480

Length = 618

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 42.0 bits (98), Expect = 0.002
 Identities = 20/57 (35%), Positives = 21/57 (36%)

Query: 333 TEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSP 389
             A+     P  A PP   P    PP   P R RPPA     A PP    G   P P
Sbjct: 722 GRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQP 778

Length = 991

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 19/62 (30%), Positives = 24/62 (38%)

Query: 321 RFLTAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKP 380
           R + AP +  +  E  +     + A   P PPP   P  PP P    PAP   P P   P
Sbjct: 76  RKILAPLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPP 135

Query: 381 MT 382
             
Sbjct: 136 QP 137

Length = 141

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 21/74 (28%), Positives = 26/74 (35%), Gaps = 9/74 (12%)

Query: 340 EPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKV---------PAPPPKPMTGVQKPSPL 390
           E P    PP P   P P   P  P+P+P   PK          P  PP         +P 
Sbjct: 74  ETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPN 133

Query: 391 GPHRQARSISSEGN 404
            P R   + S+ G 
Sbjct: 134 QPARPPSAASASGA 147

Length = 244

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 14/49 (28%), Positives = 20/49 (40%)

Query: 347 PPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHRQ 395
            P P   P    P   P  + PA      P  +P+   Q+P+P  P +Q
Sbjct: 200 APKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQ 248

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.8 bits (99), Expect = 0.002
 Identities = 23/96 (23%), Positives = 30/96 (31%), Gaps = 6/96 (6%)

Query: 318 LSFRFLTAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPP 377
           L+F    A          QS+    +  A   P     PP  P  P P   AP + PA P
Sbjct: 357 LAFH--PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVP 414

Query: 378 PKPMTGVQKPSPLGPHRQARSISSEGNEVEGESGAA 413
               T       L   +Q +         + E  AA
Sbjct: 415 LPETT----SQLLAARQQLQRAQGATKAKKSEPAAA 446

Length = 647

>gnl|CDD|222579 pfam14179, YppG, YppG-like protein

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 5/48 (10%)

Query: 339 NEPPTLAAPPPPPPPP-----GPPPPPPPPRPRPPAPPKVPAPPPKPM 381
            +P     PPPP  PP        PP P P P+     + P      +
Sbjct: 22  QQPYHQQMPPPPYSPPQQQQGHFMPPQPQPYPKQSPQQQQPPQFSSFL 69

The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 41.0 bits (97), Expect = 0.002
 Identities = 9/47 (19%), Positives = 11/47 (23%)

Query: 334 EAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKP 380
           E  ++      A     P       P P P          PA    P
Sbjct: 193 EVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAP 239

Length = 547

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.1 bits (97), Expect = 0.003
 Identities = 20/90 (22%), Positives = 28/90 (31%)

Query: 324 TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTG 383
           +A  +  +   A ++  P   AAP P   P   P P P P P  PA        P P   
Sbjct: 400 SAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPA 459

Query: 384 VQKPSPLGPHRQARSISSEGNEVEGESGAA 413
               +   P   A    +        +  A
Sbjct: 460 AAPSAQPAPAPAAAPEPTAAPAPAPPAAPA 489

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.7 bits (96), Expect = 0.003
 Identities = 17/93 (18%), Positives = 22/93 (23%), Gaps = 1/93 (1%)

Query: 321 RFLTAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKP 380
                P   SS    +++  P   AAP  P  P        P        P V AP   P
Sbjct: 596 GGEGPPAPASSGPPEEAA-RPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHP 654

Query: 381 MTGVQKPSPLGPHRQARSISSEGNEVEGESGAA 413
                  +  G                  + A 
Sbjct: 655 KHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAP 687

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 40.9 bits (96), Expect = 0.003
 Identities = 38/246 (15%), Positives = 56/246 (22%), Gaps = 43/246 (17%)

Query: 146 ERSTKRASLPPVSDSIALPPISVSIATPAPSRQRKGAPASSPSPKPRFHSPPTSPNKRPS 205
             +   AS PP         +    +   P      A  +SP+      +        P 
Sbjct: 118 PPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQA-ALPL 176

Query: 206 PSPQPTAKKKAPP--AVIVKNQPEKDQDDDVRHKEIIIAVVATAVTTFALVALLFLCCLK 263
            SP+ TA+  + P         P        R    I A                     
Sbjct: 177 SSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISA--------------------S 216

Query: 264 SRSKRIDPVKGQNDDRPLLNSSLSAGMHLSSSVLLLAPYIFLFGSKTYNFTSWNLSFRFL 323
           + S    P +   DD    +S  S+                 +G +              
Sbjct: 217 ASSPAPAPGRSAADDAGASSSDSSSSESSGCG----------WGPENECPLPRPAPITLP 266

Query: 324 TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTG 383
           T     S               +  P P      P    P P P +P   PAP     + 
Sbjct: 267 TRIWEAS----------GWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASS 316

Query: 384 VQKPSP 389
               S 
Sbjct: 317 SSSSSR 322

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 40.9 bits (96), Expect = 0.003
 Identities = 15/37 (40%), Positives = 16/37 (43%)

Query: 342 PTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPP 378
              AA PP      PP   P PRPRP    K+   PP
Sbjct: 882 RPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPP 918

Length = 1352

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 41.3 bits (97), Expect = 0.003
 Identities = 14/65 (21%), Positives = 17/65 (26%), Gaps = 8/65 (12%)

Query: 333 TEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPP--------APPKVPAPPPKPMTGV 384
           T   ++   P    P  PP   G  PPPP                      P P+P    
Sbjct: 686 TAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAE 745

Query: 385 QKPSP 389
           Q    
Sbjct: 746 QADGA 750

Length = 753

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.6 bits (95), Expect = 0.003
 Identities = 19/78 (24%), Positives = 25/78 (32%), Gaps = 3/78 (3%)

Query: 341 PPTLAAPPPPPPPPG---PPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHRQAR 397
           P T AA P   P P    P    P P   P AP   PA           P+   P  +A 
Sbjct: 374 PATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEAL 433

Query: 398 SISSEGNEVEGESGAAKT 415
           + + + +        A  
Sbjct: 434 AAARQASARGPGGAPAPA 451

Length = 700

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.2 bits (97), Expect = 0.003
 Identities = 19/72 (26%), Positives = 24/72 (33%), Gaps = 4/72 (5%)

Query: 335 AQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPP----PKPMTGVQKPSPL 390
           A  +      AA P   P   P      P P   A P+  A P    P+P      P+P 
Sbjct: 421 APPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPA 480

Query: 391 GPHRQARSISSE 402
                AR   +E
Sbjct: 481 AAPAAARLTPTE 492

Length = 618

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 20/47 (42%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 348 PPPPPPPGPPPPPPPPRPRPPAPPK--VPAPPPKPMTGVQKPSPLGP 392
           PP PP P  PP    P P  P PP    PA PP P   V  P+   P
Sbjct: 84  PPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPP 130

Length = 141

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 40.8 bits (95), Expect = 0.003
 Identities = 14/59 (23%), Positives = 18/59 (30%), Gaps = 2/59 (3%)

Query: 334 EAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGP 392
           +A ++   P  A    P P      P P P  R P     P  P         P+   P
Sbjct: 202 DANAAPAEP--AEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAP 258

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 40.7 bits (96), Expect = 0.003
 Identities = 12/49 (24%), Positives = 14/49 (28%)

Query: 328 SGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAP 376
           S S    A ++      AAP            P P  P  PA      P
Sbjct: 83  SASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADP 131

Length = 464

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 40.4 bits (94), Expect = 0.003
 Identities = 13/56 (23%), Positives = 17/56 (30%)

Query: 333 TEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPS 388
           T+  +   P        P   P   P   P +P     P+ PA  P       K S
Sbjct: 204 TQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKRS 259

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|235826 PRK06549, PRK06549, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 14/45 (31%), Positives = 15/45 (33%), Gaps = 6/45 (13%)

Query: 345 AAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPP------PKPMTG 383
            A  P  P   P P P    P+  A    PA        P PM G
Sbjct: 26  QAAAPAQPASTPVPVPTEASPQVEAQAPQPAAAAGADAMPSPMPG 70

Length = 130

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.0 bits (96), Expect = 0.003
 Identities = 45/262 (17%), Positives = 64/262 (24%), Gaps = 56/262 (21%)

Query: 162 ALPPISVSIATPAPSRQRKGAPASSPSPKPRFHSPPTSPNKRPSPSPQPTAKKKAPPAVI 221
              P  V+ A PAP  +   A  +S  P     +        P  +    A +   P   
Sbjct: 370 GGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAA 429

Query: 222 VKNQPEKDQDDDVRHKEIIIAVVATAVTTFALVALLFLCCLKSRSKRIDPVKGQNDDRPL 281
                  D+ DD    +  +   A A                      D    + D +P 
Sbjct: 430 PAPPATADRGDDAADGDAPVPAKANA------------------RASADSRCDERDAQPP 471

Query: 282 LNSSLSAGMHLSSSVLLLAPYIFLFGSKTYNFTSWNLSFRFLTAPHSGSSMTEAQSSNEP 341
            +S  ++           AP    F        +   S     A     +   A   + P
Sbjct: 472 ADSGSASAPASD------APPDAAFEPAP---RAAAPSAATPAAVPDARAPAAASREDAP 522

Query: 342 PTLAAPPPPPPPPGPPPPPPPPR-----------------------------PRPPAPPK 372
              A P P   PP P    P  R                              +P A P 
Sbjct: 523 AAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPA 582

Query: 373 VPAPPPKPMTGVQKPSPLGPHR 394
               P  P   VQ P+P     
Sbjct: 583 AAPKPAAPRVAVQVPTPRARAA 604

Length = 830

>gnl|CDD|147144 pfam04834, Adeno_E3_14_5, Early E3 14

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 339 NEPPTLAAPPPPPPPPGPP-PPPPPPRPRPPAPPKV 373
           N P  L  P  P P   P   PPPPP P+P AP  +
Sbjct: 52  NAPNALDLPRYPDPQHIPLQQPPPPPEPQPRAPSAI 87

5 kDa protein. The E3B 14.5 kDa was first identified in Human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein. Length = 97

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 326 PHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPM 381
           P         Q     P +   PP PP P P PP  P +P PP  P +P       
Sbjct: 102 PQPLQPPQPQQPMQPQPPVHPIPPLPPQP-PLPPMFPMQPLPPLLPDLPLEAWPAT 156

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.7 bits (96), Expect = 0.004
 Identities = 22/69 (31%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 324 TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPP---PRPRPPAPPKVPAPPPKP 380
           TA                P L  P    PPP PPPPPP         PA     + PP P
Sbjct: 520 TAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPP 579

Query: 381 MTGVQKPSP 389
           +     PSP
Sbjct: 580 IPEEPTPSP 588

Length = 620

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.6 bits (95), Expect = 0.004
 Identities = 18/104 (17%), Positives = 26/104 (25%), Gaps = 13/104 (12%)

Query: 317 NLSFRFLTAPHSGSSMTEA--QSSNEPPTLAAPPPPPPP----------PGPPPPPPPPR 364
            L F+  T  +    +  A  ++   P     P  P             P   P      
Sbjct: 336 QLDFQLRTTSYGQLPLELAVIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAA 395

Query: 365 PRPPAPPKV-PAPPPKPMTGVQKPSPLGPHRQARSISSEGNEVE 407
             PP  P    A PP        P        A  ++     V+
Sbjct: 396 NIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVD 439

Length = 585

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 40.3 bits (94), Expect = 0.004
 Identities = 17/68 (25%), Positives = 19/68 (27%), Gaps = 4/68 (5%)

Query: 325 APHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPP---RPRPPAPPKVPAPPPKPM 381
           AP   S            T A       P    P    P   +PR    PK PA   K  
Sbjct: 18  APAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPK-PASLWKLE 76

Query: 382 TGVQKPSP 389
             V +P  
Sbjct: 77  DFVVEPQE 84

Length = 475

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 334 EAQSSNEPPTLAAPPPPPPPPGPPPPPPP---PRPRPPAPPKVPAPP-PKPMTGVQKPSP 389
           EA     PP       PPPP   PP  PP   P P  PA    P P  P P    +   P
Sbjct: 139 EALPQPPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAPKSSHP 198

Length = 274

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 40.5 bits (95), Expect = 0.004
 Identities = 16/72 (22%), Positives = 22/72 (30%), Gaps = 1/72 (1%)

Query: 322 FLTAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPR-PPAPPKVPAPPPKP 380
                     +     +   P L    P  PPP   P  P    + PP PP+ P    +P
Sbjct: 210 HPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQP 269

Query: 381 MTGVQKPSPLGP 392
                +P P   
Sbjct: 270 PQPQAQPPPQNQ 281

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|220596 pfam10138, Tellurium_res, Tellurium resistance protein

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 14/23 (60%), Positives = 14/23 (60%)

Query: 356 PPPPPPPPRPRPPAPPKVPAPPP 378
           P  P PPP P PPAP   PA PP
Sbjct: 1   PAAPVPPPAPAPPAPAPPPAAPP 23

Members of this family confer resistance to the metalloid element tellurium and its salts. Length = 98

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	876
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	100.0
smart00498	432	FH2 Formin Homology 2 Domain. FH proteins control	100.0
PF02181	370	FH2: Formin Homology 2 Domain; InterPro: IPR015425	100.0
KOG1922	833	consensus Rho GTPase effector BNI1 and related for	100.0
KOG1923	830	consensus Rac1 GTPase effector FRL [Signal transdu	100.0
KOG1925	817	consensus Rac1 GTPase effector FHOS [Signal transd	100.0
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	99.01
smart00498	432	FH2 Formin Homology 2 Domain. FH proteins control	98.0
PHA03247	3151	large tegument protein UL36; Provisional	97.49
PHA03247	3151	large tegument protein UL36; Provisional	97.37
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	96.36
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	95.73
KOG1923	830	consensus Rac1 GTPase effector FRL [Signal transdu	95.71
KOG1922	833	consensus Rho GTPase effector BNI1 and related for	94.79
PF13908	179	Shisa: Wnt and FGF inhibitory regulator	94.14
PRK15319	2039	AIDA autotransporter-like protein ShdA; Provisiona	92.59
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	87.75
KOG4672	487	consensus Uncharacterized conserved low complexity	85.77
PF13908	179	Shisa: Wnt and FGF inhibitory regulator	82.27
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	81.16
PRK15313	955	autotransport protein MisL; Provisional	80.87
PRK15313	955	autotransport protein MisL; Provisional	80.81

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=100.00  E-value=2.9e-70  Score=618.51  Aligned_cols=381  Identities=25%  Similarity=0.394  Sum_probs=335.9

Q ss_pred             cccccccccCcccccccccccCC-CCcccccccccCccccc--hHHHHhhhccCCCCCccccCCCCCCCCCccccccccc
Q 039012          407 EGESGAAKTKLKPFFWDKVLASP-DHAMVWHEISSGSFQFN--EEMIESLFGYKPATKSRNECGKSNSVSSESSAQYIQI  483 (876)
Q Consensus       407 ~~~s~~pk~KLK~l~W~KI~~~~-~~~TIW~~i~~~s~~lD--~e~lE~lF~~k~~~~~k~~~kk~~s~s~~~~~~~vsl  483 (876)
                      ......+...||+++|.+|.+.. .++.+|-..+++.+.-|  +..++..|+.+...++...+.-+..+..+++.+...|
T Consensus       616 pKK~~k~e~~Mrr~nW~kI~p~d~s~~cFWvkv~Edk~en~dlfakL~~~Fatq~k~~k~~e~~eekkt~~kKk~kel~i  695 (1102)
T KOG1924|consen  616 PKKVYKPEVPMRRFNWSKIVPRDLSENCFWVKVNEDKLENDDLFAKLALKFATQPKVKKEQEGGEEKKTGTKKKVKELRI  695 (1102)
T ss_pred             ccccCCCCCccccCCccccCccccCccceeeecchhhccchHHHHHHHHHhhccccccccccccccccchhhhhhhhhee
Confidence            45667788999999999997653 57899999998876543  4667888998854432222111111234667788999


Q ss_pred             CChhHHHHHHHHHhhcCCCHHHHHHHHhhCC--CCCHHHHHHHHhcCCChHHHHHhhcCCCCCCCCChHHHHHHHhcCcc
Q 039012          484 IDTRKAQNLSIILRALNLTSEEVVDALEEGN--ELPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAERFLKTLVDIP  561 (876)
Q Consensus       484 LD~KraqNi~I~L~~lk~s~eeI~~aI~~~d--~L~~e~L~~Llk~~Pt~eE~~~L~~~~gd~~~L~~aEqFl~~l~~Ip  561 (876)
                      ||.|.|||++|+|..|+++++||..+|++.|  .|++.+|++|++.+|..|.+.+|+++..+.+.|.+.|||...|..|+
T Consensus       696 lDsKtaQnLsIflgS~rmpyeeik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~Kaeye~l~e~EQF~vvm~~vk  775 (1102)
T KOG1924|consen  696 LDSKTAQNLSIFLGSFRMPYEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELKAEYEDLPEPEQFVVVMSQVK  775 (1102)
T ss_pred             cchHHHHHHHHHHhhccCCHHHHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCHHHHhHHHhhcc
Confidence            9999999999999999999999999999987  49999999999999999999999998888889999999999999999


Q ss_pred             cHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccccCCCCCCCcccceeccchhhhhccc
Q 039012          562 FAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVK  641 (876)
Q Consensus       562 ~~~~RL~~llf~~~f~~~~~~l~~~l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN~gt~rG~A~GFkL~SL~KL~d~K  641 (876)
                      ++..||.+++|+.+|.+.+++|++.+..+..||++||+|+.|.+||++||.+|||||+|+...+|+||.|+.|.||.|||
T Consensus       776 rL~pRL~~ilFKl~fse~vnniKP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSrNa~afgF~is~L~kL~dTK  855 (1102)
T KOG1924|consen  776 RLRPRLSAILFKLTFSEQVNNIKPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSRNAQAFGFNISFLCKLRDTK  855 (1102)
T ss_pred             ccChhHHHHHHHhhHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccccchhhccchHHHHhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccHHHHHHHHHHHhhhhhhhhhhcccCCccccccccchhccCCChhhHHHHhhhhhhhhccchhhHHHHHHHhhc
Q 039012          642 GTDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELEDVKKAAVI  721 (876)
Q Consensus       642 s~D~k~TLLhflv~~Iir~e~~~a~~~~~e~~s~~~~~~k~~dll~~~~~~~~e~y~~lgL~~V~~Ls~EL~~V~kAA~v  721 (876)
                      ++|+|+||||||++.+.                                    +.|.+     +..|.+||++|.+|++|
T Consensus       856 saDqk~TLLHfLae~~e------------------------------------~kypd-----~l~F~ddl~hv~kaSrv  894 (1102)
T KOG1924|consen  856 SADQKTTLLHFLAEICE------------------------------------EKYPD-----ILKFPDDLEHVEKASRV  894 (1102)
T ss_pred             ccchhhHHHHHHHHHHH------------------------------------HhChh-----hhcchhhHHHHHhhccc
Confidence            99999999999997442                                    23332     56788999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccc
Q 039012          722 DADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDE  801 (876)
Q Consensus       722 d~d~L~~~v~~L~~~L~~~k~~l~~~~k~~~edd~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~~YFged~~k~e  801 (876)
                      +++.|...+..+...+++++..+....-.-.++|.|.++|..|.++|.+++..|.....+|+.+|+++.+||..|++|..
T Consensus       895 nad~ikK~~~~m~~~ik~Le~dlk~~~~~~~e~dkF~ekM~~F~e~a~eq~~~ls~M~~~M~~lye~L~eYyaFd~kkys  974 (1102)
T KOG1924|consen  895 NADEIKKNLQQMENQIKKLERDLKNFKIAGNEHDKFVEKMTSFHEKAREQYSKLSSMHGNMEKLYESLGEYYAFDPKKYS  974 (1102)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeecCcccCc
Confidence            99999999999999998887665433222346899999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 039012          802 GLRLFTIVRDFLIMLDKSCKQVKITTK  828 (876)
Q Consensus       802 ~~~fF~iv~dFl~~f~ka~kEv~~~~~  828 (876)
                      .++||+.+++|..+|..|.+|+.+.++
T Consensus       975 mEEFFaDi~tFrnaf~ea~~en~krRe 1001 (1102)
T KOG1924|consen  975 MEEFFADIRTFRNAFLEAVAENEKRRE 1001 (1102)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988766

>smart00498 FH2 Formin Homology 2 Domain

Probab=100.00  E-value=2e-66  Score=593.40  Aligned_cols=376  Identities=31%  Similarity=0.512  Sum_probs=334.4

Q ss_pred             ccccccCcccccccccccCCCCcccccccccCccccchHHHHhhhccCCCCCccccC-CCCCCCCCcccccccccCChhH
Q 039012          410 SGAAKTKLKPFFWDKVLASPDHAMVWHEISSGSFQFNEEMIESLFGYKPATKSRNEC-GKSNSVSSESSAQYIQIIDTRK  488 (876)
Q Consensus       410 s~~pk~KLK~l~W~KI~~~~~~~TIW~~i~~~s~~lD~e~lE~lF~~k~~~~~k~~~-kk~~s~s~~~~~~~vslLD~Kr  488 (876)
                      ...|+.+||++||+||.++++.+|||+++++.+ .+|+++||++|+.++........ ....+....++.+.|+|||+||
T Consensus         3 ~~~P~~klK~l~W~ki~~~~~~~tvW~~i~~~~-~~d~~~lE~lF~~k~~~~~~~~~~~~~~~~~~~~~~~~v~ild~kr   81 (432)
T smart00498        3 EPKPKKKLKPLHWDKLNPLDPRGTVWDKIDENS-EGDLDELEELFAAKEKTKSASKDVSEKKSILKKKVSQEFKILDPKR   81 (432)
T ss_pred             CCCCCCCCcCcCceeCCCccccCChhhhcCccc-ccCHHHHHHHhCcCccccCccccccccccccccccccceEeechhH
Confidence            356889999999999999889999999999876 79999999999987643321110 0000112334567899999999


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHhhCC--CCCHHHHHHHHhcCCChHHHHHhhcCCCC-CCCCChHHHHHHHhcCcccHHH
Q 039012          489 AQNLSIILRALNLTSEEVVDALEEGN--ELPLELLQTLLKMAPTTDEELKLRLFPGD-ISQLGPAERFLKTLVDIPFAFK  565 (876)
Q Consensus       489 aqNi~I~L~~lk~s~eeI~~aI~~~d--~L~~e~L~~Llk~~Pt~eE~~~L~~~~gd-~~~L~~aEqFl~~l~~Ip~~~~  565 (876)
                      +|||+|+|++|++++++|++||+++|  .|+.|.|+.|++++||.||+..|+.|.|+ .+.|+++|||++.|++||++..
T Consensus        82 s~ni~I~L~~l~~~~~ei~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~L~~~Eqfl~~l~~ip~~~~  161 (432)
T smart00498       82 SQNLAILLRKLHMSYEEICEAILEGDEDVLSVDLLEQLLKYAPTKEELKKLREYKEEDPEELARAEQFLLLISNIPYLEE  161 (432)
T ss_pred             HhhHHHHHHhcCCCHHHHHHHHHhcChhhCCHHHHHHHHhhCcCHHHHHHHHHhcccchhhcchHHHHHHHHhCCCCHHH
Confidence            99999999999999999999999988  59999999999999999999999999887 8999999999999999999999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccccCCCCCCCcccceeccchhhhhcccCCCC
Q 039012          566 RIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDG  645 (876)
Q Consensus       566 RL~~llf~~~f~~~~~~l~~~l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN~gt~rG~A~GFkL~SL~KL~d~Ks~D~  645 (876)
                      ||+||+|+.+|++++.+|.+.|.++..||++|++|+.|++||++||++|||||+|+.||+|+||+|++|.||.|||++|+
T Consensus       162 Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~mN~g~~rg~A~GFkL~sL~KL~d~Ks~d~  241 (432)
T smart00498      162 RLNALLFKANFEEEVEDLKPQLEKVEAACEELRESKKFRKLLELILAIGNYMNSGSRRGQAYGFKLSSLLKLSDVKSADN  241 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCcccCCCcCCCcceeeHHHHHHHHhhhccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHhhhhhhhhhhcccCCccccccccchhccCCChhhHHHHhhhhhhhhccchhhHHHHHHHhhccHHH
Q 039012          646 KTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELEDVKKAAVIDADS  725 (876)
Q Consensus       646 k~TLLhflv~~Iir~e~~~a~~~~~e~~s~~~~~~k~~dll~~~~~~~~e~y~~lgL~~V~~Ls~EL~~V~kAA~vd~d~  725 (876)
                      ++|||||||+.|.++++                     +                    +..|.+||..|..|++++ +.
T Consensus       242 k~tLLhylv~~i~~~~p---------------------~--------------------~~~f~~el~~v~~askvs-~~  279 (432)
T smart00498      242 KTTLLHFLVKIIRKKYP---------------------D--------------------LLDFYSDLHHLDKAKVNL-EQ  279 (432)
T ss_pred             CccHHHHHHHHHHHhCh---------------------h--------------------hccchhhhccHHHHHHHH-HH
Confidence            99999999998865442                     1                    345778999999999999 99


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccchhhh
Q 039012          726 VTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEGLRL  805 (876)
Q Consensus       726 L~~~v~~L~~~L~~~k~~l~~~~k~~~edd~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~~YFged~~k~e~~~f  805 (876)
                      |..++++|.+++..++..+..-......+++|..+|..|+..|+.++..|....+++...+++++.||||++....+.+|
T Consensus       280 l~~~~~~l~~~~~~~e~~~~~l~~~~~~~d~f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~ef  359 (432)
T smart00498      280 LEKDVKQLERQIKNLETDLGGLSDPENLDDKFIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEF  359 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence            99999999999988865433211122345899999999999999999999999999999999999999999998788999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcC
Q 039012          806 FTIVRDFLIMLDKSCKQVKITTK  828 (876)
Q Consensus       806 F~iv~dFl~~f~ka~kEv~~~~~  828 (876)
                      |++|.+|+..|.+|++|+.+.++
T Consensus       360 F~~f~~F~~~f~ka~~en~~~~~  382 (432)
T smart00498      360 FKDFNEFLKEFSKAAEENIKKEE  382 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999977655

FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.

>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []

Probab=100.00  E-value=2.9e-62  Score=548.85  Aligned_cols=364  Identities=34%  Similarity=0.556  Sum_probs=308.7

Q ss_pred             cccccccCcccccccccccCCCCcccccccccCc--cccchHHHHhhhccCCCCCccccCCCCCCCCCcccccccccCCh
Q 039012          409 ESGAAKTKLKPFFWDKVLASPDHAMVWHEISSGS--FQFNEEMIESLFGYKPATKSRNECGKSNSVSSESSAQYIQIIDT  486 (876)
Q Consensus       409 ~s~~pk~KLK~l~W~KI~~~~~~~TIW~~i~~~s--~~lD~e~lE~lF~~k~~~~~k~~~kk~~s~s~~~~~~~vslLD~  486 (876)
                      ....|+.+||++||++|......+|||+++....  ..+|++++|++|+.+........    ......++++.++|||+
T Consensus         3 ~~~~p~~k~k~l~W~~i~~~~~~~tiW~~~~~~~~~~~~d~~~le~~F~~~~~~~~~~~----~~~~~~~~~~~~~iLd~   78 (370)
T PF02181_consen    3 KKPKPKKKLKPLHWDKIPNSKIKGTIWSKIDEDEFNIDIDFEELEELFAKKEKEKKSKK----KQASKKKKKKKISILDP   78 (370)
T ss_dssp             -----SS-B------EESSGGCTTSCCCCTCCHHHHCTSHHHHHHHHTBSCECHHHH--------HCCCCTTCCESSS-H
T ss_pred             CCCCCCCCCcCCCceecCcccccCCccccCcccccchhhhHHHHHHHhccccccccccc----cccccccccccccccch
Confidence            3467889999999999998889999999998765  46899999999998875422111    01234456788999999


Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHhhCCC--CCHHHHHHHHhcCCChHHHHHhhcCCCCCCCCChHHHHHHHhcCcccHH
Q 039012          487 RKAQNLSIILRALNLTSEEVVDALEEGNE--LPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAERFLKTLVDIPFAF  564 (876)
Q Consensus       487 KraqNi~I~L~~lk~s~eeI~~aI~~~d~--L~~e~L~~Llk~~Pt~eE~~~L~~~~gd~~~L~~aEqFl~~l~~Ip~~~  564 (876)
                      ||+|||+|+|++|++++++|++||..+|.  |+.|.|+.|++++||.||+..+++|.++...|+++|+|++.|+.||++.
T Consensus        79 kr~~ni~I~L~~~~~~~~~l~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~E~f~~~l~~ip~~~  158 (370)
T PF02181_consen   79 KRSQNIGIVLKKFKLSPEELIQAILNLDEEVLTEELLENLLKILPTPEEIEALKAYKGDPATLGPAEQFLLELSKIPRLK  158 (370)
T ss_dssp             HHHHHHHHHHHHHTS-HHHHHHHHHTTTTCCCTHHHHHHHHHHCGGHHHHHHHHCTCTSGTTB-HHHHHHHHHTTSTTHH
T ss_pred             HHHHHHHHHhhccCCCHHHHHHHHHccCccccchHHHHHHHhcCCCchHHHHHHHHhccHHhhccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998874  9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccccCCCCCCCcccceeccchhhhhcccCCC
Q 039012          565 KRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTD  644 (876)
Q Consensus       565 ~RL~~llf~~~f~~~~~~l~~~l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN~gt~rG~A~GFkL~SL~KL~d~Ks~D  644 (876)
                      .||+||+|+.+|++++.++...|..+..||++|++|..|+++|++||++|||||+|+.+|+|.||+|++|.||.+||++|
T Consensus       159 ~rl~~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~~~g~A~GF~L~sL~kL~~~Ks~d  238 (370)
T PF02181_consen  159 ERLEALLFKSEFEEQLEELKEKLEKLEAACEELRESKSLRRLLEIILAIGNFLNGGTPRGNAKGFKLSSLSKLKDTKSND  238 (370)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSTCSTTCS-SEE-GGGGGGCCCSB-ST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhccCCCccccceecHHhHHHHHhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHhhhhhhhhhhcccCCccccccccchhccCCChhhHHHHhhhhhhhhccchhhHHHHHHHhhccHH
Q 039012          645 GKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELEDVKKAAVIDAD  724 (876)
Q Consensus       645 ~k~TLLhflv~~Iir~e~~~a~~~~~e~~s~~~~~~k~~dll~~~~~~~~e~y~~lgL~~V~~Ls~EL~~V~kAA~vd~d  724 (876)
                      +++|||||||+.+.++.                     +                    .+..|.+||..|..|+++|++
T Consensus       239 ~~~tLL~~l~~~~~~~~---------------------~--------------------~~~~~~~eL~~v~~a~~~~~~  277 (370)
T PF02181_consen  239 NKTTLLHYLVKIVEEKF---------------------P--------------------DLLDLEDELSSVEKASKVSLD  277 (370)
T ss_dssp             TTSBHHHHHHHHHHTTS---------------------G--------------------GGGGHHHHTTTHHHCCTS-HH
T ss_pred             CCchHHHHHHHHHHhcC---------------------h--------------------HHhccHHHHhhHHhhhhhhHH
Confidence            99999999998664311                     1                    134567899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccchhh
Q 039012          725 SVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEGLR  804 (876)
Q Consensus       725 ~L~~~v~~L~~~L~~~k~~l~~~~k~~~edd~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~~YFged~~k~e~~~  804 (876)
                      +|..++.+|.+++..++..++......+.++.|...|..|++.++.++..|++.++++.+.+++++.||||++.+..+.+
T Consensus       278 ~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~~  357 (370)
T PF02181_consen  278 ELEQDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYFGEDPKKMSPEE  357 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence            99999999999999999887655444567899999999999999999999999999999999999999999999888999


Q ss_pred             hhHHHHHHHHHHH
Q 039012          805 LFTIVRDFLIMLD  817 (876)
Q Consensus       805 fF~iv~dFl~~f~  817 (876)
                      ||++|.+|+.+|+
T Consensus       358 ff~~l~~F~~~fk  370 (370)
T PF02181_consen  358 FFKILSQFIDMFK  370 (370)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999999985

Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.

>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]

Probab=100.00  E-value=2.2e-52  Score=512.80  Aligned_cols=431  Identities=38%  Similarity=0.575  Sum_probs=370.8

Q ss_pred             cccccCcccccccccccCCCCcccccccccCccccch---HHHHhhhccCCCCCccccCCCCCCCCCcccccccccCChh
Q 039012          411 GAAKTKLKPFFWDKVLASPDHAMVWHEISSGSFQFNE---EMIESLFGYKPATKSRNECGKSNSVSSESSAQYIQIIDTR  487 (876)
Q Consensus       411 ~~pk~KLK~l~W~KI~~~~~~~TIW~~i~~~s~~lD~---e~lE~lF~~k~~~~~k~~~kk~~s~s~~~~~~~vslLD~K  487 (876)
                      ..+..+|+++||+++..+....++|+++..+++.+|.   +++|.+|++......................+.+.++|.+
T Consensus       390 ~~p~~~lk~l~wdk~~~~~~~~~~w~~~~~~~~~~~~~~~~~~e~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~r  469 (833)
T KOG1922|consen  390 AQPKNKLKPLHWDKTRGSSKRSMVWSEVDSSSSLFDPPLSELMEALFGLVKFLPSDNGGDTGREEKTAVEKKRLKVLDPR  469 (833)
T ss_pred             CCCCCCCCCccccccCCCCccCCCCCccccCCcCCCCCcccccccchhhhhcccCCCCCCCccccccccccccccccCCC
Confidence            5678999999999999999999999999999988888   9999999887654333321111001112223679999999


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHhhCCC--CCHHHHHHHHhcCCChHHHHHhhcCCCCCCCCChHHHHHHH-hcCcccHH
Q 039012          488 KAQNLSIILRALNLTSEEVVDALEEGNE--LPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAERFLKT-LVDIPFAF  564 (876)
Q Consensus       488 raqNi~I~L~~lk~s~eeI~~aI~~~d~--L~~e~L~~Llk~~Pt~eE~~~L~~~~gd~~~L~~aEqFl~~-l~~Ip~~~  564 (876)
                      +.||++|+|+.+++..++++.||.+++.  +..++|+.|.++.|+.+|..+++.|.++...|+..|+|+.+ +..||+++
T Consensus       470 ~~~n~~ill~sl~~~~~~~~~a~~~~~~~~~~~~~l~~l~~~~pt~~E~~~l~~~~~~~~~l~~~e~~~~~~~~~ip~~~  549 (833)
T KOG1922|consen  470 RPQNIAILLSSLNMPTEDIPQALLELDDSVLGLDQLEKLLKFAPTKEEETKLKEESGDPLTLGDAEKFFFEELSGIPEFE  549 (833)
T ss_pred             CccceeeehhhcCCchHHHHHHHhccCccccCHHHHHHHHccCCChhHHHHHHhhcCCCCccchHHHHHHHHhhcchHHH
Confidence            9999999999999999999999998876  99999999999999999999999999988999999999887 66799999


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccccCCCCCCCcccceeccchhhhhcccCCC
Q 039012          565 KRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTD  644 (876)
Q Consensus       565 ~RL~~llf~~~f~~~~~~l~~~l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN~gt~rG~A~GFkL~SL~KL~d~Ks~D  644 (876)
                      .|+++++|+..|.+++..+...+.+++.||++++++..|.+++++||..|||||.|+.||+|+||+|++|.||.|+|+.+
T Consensus       550 ~~~~~~~f~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~~~~~~e~il~~Gn~mN~g~~rg~a~~f~l~~l~kl~d~ks~~  629 (833)
T KOG1922|consen  550 ERLQALSFRSKFSEEVTALKKKLETVEVASKELLESKKFLKILEIILAAGNRMNAGTNRGSAHGFKLDALLKLSDVKSSD  629 (833)
T ss_pred             HHHHHhhhhhhccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccccccccccchhhHHHHhhhhhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHhhhhhhhhhhcccCCccccccccchhccCCChhhHHHHhhhhhhhhccchhhHHHHHHHhhccHH
Q 039012          645 GKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELEDVKKAAVIDAD  724 (876)
Q Consensus       645 ~k~TLLhflv~~Iir~e~~~a~~~~~e~~s~~~~~~k~~dll~~~~~~~~e~y~~lgL~~V~~Ls~EL~~V~kAA~vd~d  724 (876)
                      +++++|||++.++++.+|.+...                         ..+.|+.+|+++|.+|..||.+|++|++||++
T Consensus       630 ~~~~~l~~~~~e~~~~~~~r~~~-------------------------~~~~~~~~~~~~~~~~~~~l~~v~~aa~i~~~  684 (833)
T KOG1922|consen  630 GKTTLLHFVVPEVVRSEGKRSVI-------------------------DVEKSRRLGLPSLLKFLSDLSNVESAAKIDLE  684 (833)
T ss_pred             ccchhhhhhHHHHHHhhccccch-------------------------hhhhhhhccchhhhcccchhcccchhhccCHH
Confidence            99999999999999988764211                         35688999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-Hhhhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCc-ccc
Q 039012          725 SVTATVSKLSTSLTKTKAFLD-TEMKN-KDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSG-KDE  801 (876)
Q Consensus       725 ~L~~~v~~L~~~L~~~k~~l~-~~~k~-~~edd~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~~YFged~~-k~e  801 (876)
                      .+..++.+|.+++.++++.+. ..... ....+.|...|..|+..|+.++..+..++++++.+++.+++|||+++. +..
T Consensus       685 ~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~~fl~~ae~ev~~l~~~~~~~~~~~~~~~~yf~~~~~~~~~  764 (833)
T KOG1922|consen  685 VLAEECSDLKKGLEKVKRELPTASKNESLPPGDPFSKVKKEFLSSAEKEVKLLISEEREVRESVKKTAKYFGEDPKEEIT  764 (833)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCC
Confidence            999999999999999999885 33222 336789999999999999999999999999999999999999999995 556


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCcCCCCCCchhhhhhchhhhcccCCCCCC
Q 039012          802 GLRLFTIVRDFLIMLDKSCKQVKITTKPSRTSRKETLTSSPSRENRQPSSDMRQKLFPAIEDRRMDFSSS  871 (876)
Q Consensus       802 ~~~fF~iv~dFl~~f~ka~kEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  871 (876)
                      ..++|.++++|+.++++||+|++..++++++.     .....+....-..+.+..++.+..+|..++.++
T Consensus       765 ~~~~f~~~r~fl~~~~~~~~e~~~~~~k~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  829 (833)
T KOG1922|consen  765 PEQVFSILRDFLRTFDKAHEENKKAEEKEKTY-----EAEEKRANKEAELEELKNISQAVSKRTSDSESS  829 (833)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----ccccccccccccccccccccccccccccccccc
Confidence            78999999999999999999999998732222     111112223334566667777777777655444

>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]

Probab=100.00  E-value=2e-51  Score=469.31  Aligned_cols=370  Identities=24%  Similarity=0.348  Sum_probs=321.7

Q ss_pred             ccccccccCcccccccccccCCCCcccccccccCcc--ccchHHHHhhhccCCCCCccccCCCCCCCCCcccccccccCC
Q 039012          408 GESGAAKTKLKPFFWDKVLASPDHAMVWHEISSGSF--QFNEEMIESLFGYKPATKSRNECGKSNSVSSESSAQYIQIID  485 (876)
Q Consensus       408 ~~s~~pk~KLK~l~W~KI~~~~~~~TIW~~i~~~s~--~lD~e~lE~lF~~k~~~~~k~~~kk~~s~s~~~~~~~vslLD  485 (876)
                      ......+.++..++|..+..+++++|+++++.+..+  .+|++++|+.|..-......-...+..+....+..++++++|
T Consensus       362 k~~~~tk~~~p~lnW~alKP~qv~~tvf~~~~De~Il~~lD~~~~ee~Fk~~~s~~~~~~e~~a~~~~~~ka~qk~tLle  441 (830)
T KOG1923|consen  362 KKPTPTKTKSPSLNWLALKPIQVKGTVFHELNDEKILEALDFSRFEEQFKILKSNGQILDESSAVSKAMTKAPQKRTLLE  441 (830)
T ss_pred             cCCCcccccCCCccccccCccccccchhhhhhHHHHHHhhhHHHHHHHHHhhhcccchhhhHHHHHHHhhhhhhhhhHHH
Confidence            344556888999999999999999999999888765  479999999997722111100000000123345578899999


Q ss_pred             hhHHHHHHHHHhhcCCCHHHHHHHHhhCC--CCCHHHHHHHHhcCCChHHHHHhhcCCCC---CCCCChHHHHHHHhcCc
Q 039012          486 TRKAQNLSIILRALNLTSEEVVDALEEGN--ELPLELLQTLLKMAPTTDEELKLRLFPGD---ISQLGPAERFLKTLVDI  560 (876)
Q Consensus       486 ~KraqNi~I~L~~lk~s~eeI~~aI~~~d--~L~~e~L~~Llk~~Pt~eE~~~L~~~~gd---~~~L~~aEqFl~~l~~I  560 (876)
                      .+|++|++|.++ +++..++|+.||+..|  .|+.+.++.|.+++||++|...+++|..+   ...|++.++|+..+..|
T Consensus       442 ~~R~~nlaiT~R-~~~~~~~V~~Aih~~dLk~L~~~~ve~L~r~lPTe~E~kl~~~~~~e~~pme~Ls~edkFml~lskI  520 (830)
T KOG1923|consen  442 QRRLFNLAITRR-VQMKAKEVMAAIHPLDLKALSLEPVELLQRILPTEAEVKLLREYERERSPMENLSEEDKFMLSLSKI  520 (830)
T ss_pred             HHHHHHHHHHhh-hcCchHHHHHHhhhccccccCCcHHHHHHhcCCchHHHHHHHHhhhhcCchhhcccchhhhhhhhhh
Confidence            999999999999 9999999999999766  69999999999999999999999988643   56799999999999999


Q ss_pred             ccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccccCCCCCCCcccceeccchhhhhcc
Q 039012          561 PFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADV  640 (876)
Q Consensus       561 p~~~~RL~~llf~~~f~~~~~~l~~~l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN~gt~rG~A~GFkL~SL~KL~d~  640 (876)
                      .++.+|+..|-|+.+|.+.+..+.+++..+..|+..+++|++|+.+|++||++|||||.+. ||.++||+|.+|.-|.++
T Consensus       521 Erle~klatM~~m~nF~dsv~ll~pq~~si~aAS~s~k~sr~lr~VleiILA~gNymns~k-Rg~ayGFklqslD~ll~t  599 (830)
T KOG1923|consen  521 ERLEEKLATMEFMGNFPDSVQLLAPQLISIIAASKSLKESRKLRPVLEIILAFGNYMNSSK-RGAAYGFKLQSLDSLLDT  599 (830)
T ss_pred             hhhHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccCCCcc-cccccceeccccHHHhhc
Confidence            9999999999999999999999999999999999999999999999999999999999987 799999999999999999


Q ss_pred             cCCCCCccHHHHHHHHHHHhhhhhhhhhhcccCCccccccccchhccCCChhhHHHHhhhhhhhhccchhhHHHHHHHhh
Q 039012          641 KGTDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELEDVKKAAV  720 (876)
Q Consensus       641 Ks~D~k~TLLhflv~~Iir~e~~~a~~~~~e~~s~~~~~~k~~dll~~~~~~~~e~y~~lgL~~V~~Ls~EL~~V~kAA~  720 (876)
                      |++|.++|||||++-.|.                                    +.|.     .+..|.+||..|.+|+.
T Consensus       600 kStDr~~tLlh~iv~~i~------------------------------------eklp-----~l~~F~~el~~~eKa~a  638 (830)
T KOG1923|consen  600 KSTDRSMTLLHYIVLTIA------------------------------------EKLP-----ALQLFFSELDFVEKATA  638 (830)
T ss_pred             cCCccceeeeehhhHHHH------------------------------------HhhH-----HHHhhHHHhhccchhhh
Confidence            999999999999997652                                    2222     35678899999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccc
Q 039012          721 IDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKD  800 (876)
Q Consensus       721 vd~d~L~~~v~~L~~~L~~~k~~l~~~~k~~~edd~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~~YFged~~k~  800 (876)
                      ++++.+..||.+|..|+..++++.+...     .+   ..|+.|++.++.+++.|++..+.+.+.++.+++|||++++..
T Consensus       639 v~lesV~~Dv~eL~~g~~l~~kE~e~~~-----~~---~iL~~F~~n~~~kmkkl~~~~k~A~~af~~~~~y~Gespk~t  710 (830)
T KOG1923|consen  639 VQLESVLADVKELNAGMTLAEKETEREG-----LD---VILSEFLDNNKPKMKKLRKDFKDAAEAFEDVVEYFGESPKTT  710 (830)
T ss_pred             hhhhccchhHHHHHhHHHHHHHHHhhhc-----cc---hHHHHHHhcccHHHHHHHHHHHHHHHHHHhHhHhhCCCCCCC
Confidence            9999999999999999999887654321     11   689999999999999999999999999999999999999888


Q ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 039012          801 EGLRLFTIVRDFLIMLDKSCKQVKITTK  828 (876)
Q Consensus       801 e~~~fF~iv~dFl~~f~ka~kEv~~~~~  828 (876)
                      .+.-||..|..|..+|.++..|++.+.+
T Consensus       711 ppt~ff~~f~~F~~~~k~~~~ene~k~~  738 (830)
T KOG1923|consen  711 PPTVFFQLFVRFVRAYKMARQENEQKKK  738 (830)
T ss_pred             CCCccHHHHHHHHHHHHhhhhhhhhhhh
Confidence            8899999999999999999988877655

>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]

Probab=100.00  E-value=8.6e-39  Score=349.62  Aligned_cols=363  Identities=22%  Similarity=0.309  Sum_probs=300.6

Q ss_pred             cccccCcccccccccccC--------CCCcccccccccCccccchHHHHhhhccCCCCCccccCCCCCCCCCcccccccc
Q 039012          411 GAAKTKLKPFFWDKVLAS--------PDHAMVWHEISSGSFQFNEEMIESLFGYKPATKSRNECGKSNSVSSESSAQYIQ  482 (876)
Q Consensus       411 ~~pk~KLK~l~W~KI~~~--------~~~~TIW~~i~~~s~~lD~e~lE~lF~~k~~~~~k~~~kk~~s~s~~~~~~~vs  482 (876)
                      ...+.++-++||..+.-.        .-.+|+|+.++..+  +|...||.||..+.....  ..||    ..+.+.+..+
T Consensus       278 ~~~~r~~~KL~Wr~~~~~~~~Gv~~~r~~~t~W~s~D~~~--~D~~r~~~LFEsr~~~~~--P~KK----~~E~r~~~~t  349 (817)
T KOG1925|consen  278 LPTKRKTVKLFWRDVKLAGGHGVSASRPCATLWASLDPVS--VDTARLEHLFESRAKEVL--PSKK----AGEGRRTMTT  349 (817)
T ss_pred             ccccCceeEEEeecceecCCCCCccccccchhhhccCcce--ecHHHHHHHHHHhhhhhc--cchh----hcccceeeee
Confidence            335678889999887532        24689999998754  799999999977642210  1111    2233457889


Q ss_pred             cCChhHHHHHHHHHhhcCCCHHHHHHHHhhCCC--CCHHHHHHHHhcCCChHHHHHhhcC--CCCCCCCChHHHHHHHhc
Q 039012          483 IIDTRKAQNLSIILRALNLTSEEVVDALEEGNE--LPLELLQTLLKMAPTTDEELKLRLF--PGDISQLGPAERFLKTLV  558 (876)
Q Consensus       483 lLD~KraqNi~I~L~~lk~s~eeI~~aI~~~d~--L~~e~L~~Llk~~Pt~eE~~~L~~~--~gd~~~L~~aEqFl~~l~  558 (876)
                      |||.||.|.|.|-|.+|. +..-|..||++.|.  ++.|.|+.|++|+||++|++++...  ....-.|+.||||++.|.
T Consensus       350 VL~~KRt~AINIGLT~LP-Pv~VI~AA~~~FD~~~~~KDGIEK~L~MmPt~eE~qkIe~aqlaNPEipLG~AEQfLLtLS  428 (817)
T KOG1925|consen  350 VLDPKRTNAINIGLTTLP-PVHVIKAALLNFDEFAVSKDGIEKLLTMMPTEEERQKIEGAQLANPEIPLGPAEQFLLTLS  428 (817)
T ss_pred             ecCcccccceeeccccCC-chhhhHHHHhcchhhhcchhhHHHHHHhCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHh
Confidence            999999999999999985 56677889988774  7889999999999999999988643  233468999999999999


Q ss_pred             CcccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccccCCCCCCCcccceeccchhhhh
Q 039012          559 DIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLA  638 (876)
Q Consensus       559 ~Ip~~~~RL~~llf~~~f~~~~~~l~~~l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN~gt~rG~A~GFkL~SL~KL~  638 (876)
                      .|+.+.+||+.|.|+..|+..-.+|.+-|-.+..|.++|.+++.|+-+|..+|+||||||+..    ++||.|+.|.|..
T Consensus       429 sI~~L~aRL~LWaFklDY~~~EKeiAEPL~Dlk~gm~qlE~n~Tf~~il~tLLAIGNfLnGT~----~KgFeLsYLeKvs  504 (817)
T KOG1925|consen  429 SIGGLAARLQLWAFKLDYDSMEKEIAEPLFDLKVGMEQLEQNATFRCILATLLAIGNFLNGTQ----SKGFELSYLEKVS  504 (817)
T ss_pred             hhHHHHHHHHHHhhhcccchhhHHhhhHHHHHHHHHHHHHhcchHHHHHHHHHHHhccccCcc----ccceehHhhhhch
Confidence            999999999999999999999999999999999999999999999999999999999999865    8899999999999


Q ss_pred             cccCCCCCccHHHHHHHHHHHhhhhhhhhhhcccCCccccccccchhccCCChhhHHHHhhhhhhhhccchhhHHHHHHH
Q 039012          639 DVKGTDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELEDVKKA  718 (876)
Q Consensus       639 d~Ks~D~k~TLLhflv~~Iir~e~~~a~~~~~e~~s~~~~~~k~~dll~~~~~~~~e~y~~lgL~~V~~Ls~EL~~V~kA  718 (876)
                      ++|++-.|.||||+|+..++..              ||       |                    -+.|-+|+..|-+.
T Consensus       505 EVKDtV~KqsLlhHlc~~vVE~--------------Fp-------e--------------------ssDLYSEiGA~tRS  543 (817)
T KOG1925|consen  505 EVKDTVRKQSLLHHLCSLVVET--------------FP-------E--------------------SSDLYSEIGALTRS  543 (817)
T ss_pred             hhcchHHHHHHHHHHHHHHHHh--------------CC-------c--------------------chhHHHHhHhhhhh
Confidence            9999999999999999877542              22       1                    12345688899999


Q ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCc
Q 039012          719 AVIDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSG  798 (876)
Q Consensus       719 A~vd~d~L~~~v~~L~~~L~~~k~~l~~~~k~~~edd~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~~YFged~~  798 (876)
                      |+||+++|...+..|++.++..++-|.. +...+-..-....|..|+.++.++|..|+..+.++.+.|.+.+-|||-...
T Consensus       544 AkVDf~qL~DNL~qlErrCKaSWe~L~~-Iakhe~~p~l~~r~~~fl~~cA~RI~~LKivhrr~~NRfHSFLLy~Gy~p~  622 (817)
T KOG1925|consen  544 AKVDFEQLTDNLGQLERRCKASWESLRS-IAKHELAPALRARLTHFLDQCARRIAMLKIVHRRVCNRFHSFLLYLGYTPQ  622 (817)
T ss_pred             hhccHHHHHHHHHHHHHHhhHHHHHHHH-HHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence            9999999999999999999888877644 232333456788999999999999999999999999999999999986543


Q ss_pred             ---ccchhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 039012          799 ---KDEGLRLFTIVRDFLIMLDKSCKQVKITTK  828 (876)
Q Consensus       799 ---k~e~~~fF~iv~dFl~~f~ka~kEv~~~~~  828 (876)
                         ......||.+|++|...|......|-+.++
T Consensus       623 aIrev~iN~fc~~~~EFaLEYRTTRervLQQ~q  655 (817)
T KOG1925|consen  623 AIREVRINQFCHTLREFALEYRTTRERVLQQQQ  655 (817)
T ss_pred             hhhhcCHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence               234689999999999999877776655544

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=99.01  E-value=3.9e-08  Score=114.89  Aligned_cols=69  Identities=19%  Similarity=0.263  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHhhccccCCCCCCCcccceeccchhhhhcccCCCCCccHHHHHHHHHHHhhhhh
Q 039012          586 SFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIR  664 (876)
Q Consensus       586 ~l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN~gt~rG~A~GFkL~SL~KL~d~Ks~D~k~TLLhflv~~Iir~e~~~  664 (876)
                      .|..+..-.+.|...+.|..+|.-|-.+       ..|-.+.=|||..=..+.++|-   .+.-..-.+++|-.+++.+
T Consensus       750 ~L~e~Kaeye~l~e~EQF~vvm~~vkrL-------~pRL~~ilFKl~fse~vnniKP---~i~avt~ACEE~rkSesFs  818 (1102)
T KOG1924|consen  750 KLSELKAEYEDLPEPEQFVVVMSQVKRL-------RPRLSAILFKLTFSEQVNNIKP---DIVAVTAACEELRKSESFS  818 (1102)
T ss_pred             HHHHHHHhccCCCCHHHHhHHHhhcccc-------ChhHHHHHHHhhHHHHHhhcCh---HHHHHHHHHHHHHhhhhHH
Confidence            3444455566677777776655554322       2344567788887777777775   2333445556666666544

>smart00498 FH2 Formin Homology 2 Domain

Probab=98.00  E-value=2.8e-05  Score=90.22  Aligned_cols=124  Identities=28%  Similarity=0.359  Sum_probs=96.7

Q ss_pred             hhhhhccchhhHHHH----HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc---chhhHHHHHHHHHHHHHHH
Q 039012          701 GLQVVSGLSTELEDV----KKAAVIDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEK---TEFYNVVTKFLERAETDIA  773 (876)
Q Consensus       701 gL~~V~~Ls~EL~~V----~kAA~vd~d~L~~~v~~L~~~L~~~k~~l~~~~k~~~ed---d~F~e~m~~Fle~Ae~ei~  773 (876)
                      +|+...+..+++..+    ..++..+++.|...+.++...+.++.+++..+.+....+   ..|.+.|..|...+++.+.
T Consensus       300 ~l~~~~~~~d~f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~en~~  379 (432)
T smart00498      300 GLSDPENLDDKFIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIK  379 (432)
T ss_pred             hcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444555555    888999999999999999999999988876554432212   3455667777777888888


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCc--ccchhhhhHHHHHHHHHHHHHHHHHH
Q 039012          774 WLLEEEKRIMALVKSTADYFHGNSG--KDEGLRLFTIVRDFLIMLDKSCKQVK  824 (876)
Q Consensus       774 ~L~e~~k~~~~l~k~~~~YFged~~--k~e~~~fF~iv~dFl~~f~ka~kEv~  824 (876)
                      .+.+++++.+..++++++||++...  +..+..+|.+++||+.++|++|++++
T Consensus       380 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~d~~~~~~~  432 (432)
T smart00498      380 KEEEEEERRKQLVKETTEYEQSSSRQKERNPSMDFEVERDFLGVLDSLLEELG  432 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhccchhhhhhhhhhhhhHHHHHHhhC
Confidence            8888999999999999999998653  34567899999999999999999873

FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.

>PHA03247 large tegument protein UL36; Provisional

Probab=97.49  E-value=0.0092  Score=78.98  Aligned_cols=10  Identities=20%  Similarity=0.411  Sum_probs=6.1

Q ss_pred             hhhhcccccc
Q 039012           56 TFVHCRNQLV   65 (876)
Q Consensus        56 ~~~~~~~~~~   65 (876)
                      .||+-..|+-
T Consensus      2535 ~w~~glEe~a 2544 (3151)
T PHA03247       2535 TWIRGLEELA 2544 (3151)
T ss_pred             hhhhhhhhhh
Confidence            4777666644

>PHA03247 large tegument protein UL36; Provisional

Probab=97.37  E-value=0.01  Score=78.57  Aligned_cols=6  Identities=50%  Similarity=0.722  Sum_probs=2.2

Q ss_pred             HHHHHH
Q 039012          590 LEVACD  595 (876)
Q Consensus       590 l~~A~~  595 (876)
                      |.+||.
T Consensus      3114 Li~ACr 3119 (3151)
T PHA03247       3114 LIEACR 3119 (3151)
T ss_pred             HHHHHH
Confidence            333333

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=96.36  E-value=0.014  Score=67.05  Aligned_cols=16  Identities=19%  Similarity=-0.012  Sum_probs=7.9

Q ss_pred             ccccccCccccccccc
Q 039012          410 SGAAKTKLKPFFWDKV  425 (876)
Q Consensus       410 s~~pk~KLK~l~W~KI  425 (876)
                      +..+...+|.+.-+.+
T Consensus       474 ~i~~G~ql~~ve~t~~  489 (569)
T KOG3671|consen  474 AIAPGGQLKKVETTAL  489 (569)
T ss_pred             ccCccccccceeeccC
Confidence            4444555555544444

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=95.73  E-value=0.036  Score=63.83  Aligned_cols=9  Identities=22%  Similarity=0.191  Sum_probs=4.4

Q ss_pred             HHHHHhcch
Q 039012           16 ICALATANI   24 (876)
Q Consensus        16 ~~~~~~~~~   24 (876)
                      +++.||+-|
T Consensus        39 ~l~aAVVqL   47 (569)
T KOG3671|consen   39 TLAAAVVQL   47 (569)
T ss_pred             hHHHHHHHH
Confidence            344555555

>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]

Probab=95.71  E-value=0.048  Score=65.66  Aligned_cols=31  Identities=19%  Similarity=0.130  Sum_probs=22.9

Q ss_pred             HHHHHhhccHHHHHHHHHHHhhccccCCCCC
Q 039012          592 VACDKLRSSRLFLKLLEAVLKTGNRMNDGTY  622 (876)
Q Consensus       592 ~A~~eLr~S~~l~~lL~~VL~iGN~mN~gt~  622 (876)
                      ...++.+.-+...++.-.+..|+|.=-.|..
T Consensus       555 ~s~k~sr~lr~VleiILA~gNymns~kRg~a  585 (830)
T KOG1923|consen  555 KSLKESRKLRPVLEIILAFGNYMNSSKRGAA  585 (830)
T ss_pred             hhHHHHHHHHHHHHHHHHhhccCCCcccccc
Confidence            3445666677778888889999998777753

>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]

Probab=94.79  E-value=11  Score=47.76  Aligned_cols=38  Identities=18%  Similarity=0.195  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccccCC
Q 039012          582 SIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMND  619 (876)
Q Consensus       582 ~l~~~l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN~  619 (876)
                      .+...+..++.+....+....+..+.+++...|++++.
T Consensus       615 ~l~~l~kl~d~ks~~~~~~~l~~~~~e~~~~~~~r~~~  652 (833)
T KOG1922|consen  615 KLDALLKLSDVKSSDGKTTLLHFVVPEVVRSEGKRSVI  652 (833)
T ss_pred             hHHHHhhhhhhhcccccchhhhhhHHHHHHhhccccch
Confidence            34444444444455555567788888899999998886

>PF13908 Shisa: Wnt and FGF inhibitory regulator

Probab=94.14  E-value=0.16  Score=52.07  Aligned_cols=9  Identities=22%  Similarity=0.748  Sum_probs=3.6

Q ss_pred             HHHHHHhhh
Q 039012          252 ALVALLFLC  260 (876)
Q Consensus       252 ~~a~~~fl~  260 (876)
                      |++.++|+|
T Consensus        92 v~~Iv~~~C  100 (179)
T PF13908_consen   92 VVLIVCFCC  100 (179)
T ss_pred             HHhHhhhee
Confidence            333334444

>PRK15319 AIDA autotransporter-like protein ShdA; Provisional

Probab=92.59  E-value=0.16  Score=66.62  Aligned_cols=8  Identities=25%  Similarity=0.725  Sum_probs=4.3

Q ss_pred             cccccccc
Q 039012          432 AMVWHEIS  439 (876)
Q Consensus       432 ~TIW~~i~  439 (876)
                      ..+|..+.
T Consensus      1762 ~s~W~Ri~ 1769 (2039)
T PRK15319       1762 GSVWARFK 1769 (2039)
T ss_pred             CCeEEEEe
Confidence            35666544

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=87.75  E-value=0.1  Score=51.94  Aligned_cols=34  Identities=26%  Similarity=0.606  Sum_probs=20.3

Q ss_pred             chHHHHHHHHHHHH--HHHHHHHHhhhhccCCCCcC
Q 039012          236 HKEIIIAVVATAVT--TFALVALLFLCCLKSRSKRI  269 (876)
Q Consensus       236 ~ktv~iav~~ta~~--t~~~a~~~fl~c~~~r~~~~  269 (876)
                      +++++|||+++..+  .+++++|+|+||.|.||+.+
T Consensus        47 nknIVIGvVVGVGg~ill~il~lvf~~c~r~kktdf   82 (154)
T PF04478_consen   47 NKNIVIGVVVGVGGPILLGILALVFIFCIRRKKTDF   82 (154)
T ss_pred             CccEEEEEEecccHHHHHHHHHhheeEEEecccCcc
Confidence            45677777766433  44455666667766655554

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]

Probab=85.77  E-value=64  Score=37.33  Aligned_cols=11  Identities=18%  Similarity=0.407  Sum_probs=6.0

Q ss_pred             CCHHHHHHHHh
Q 039012          501 LTSEEVVDALE  511 (876)
Q Consensus       501 ~s~eeI~~aI~  511 (876)
                      ++.++...+++
T Consensus       470 vtkDDaY~~FM  480 (487)
T KOG4672|consen  470 VTKDDAYNAFM  480 (487)
T ss_pred             CcchHHHHHHH
Confidence            35556555554

>PF13908 Shisa: Wnt and FGF inhibitory regulator

Probab=82.27  E-value=4.9  Score=41.23  Aligned_cols=19  Identities=21%  Similarity=0.445  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHhhhhccC
Q 039012          246 TAVTTFALVALLFLCCLKS  264 (876)
Q Consensus       246 ta~~t~~~a~~~fl~c~~~  264 (876)
                      .+++++|++++-|.||+.+
T Consensus        89 i~Iv~~Iv~~~Cc~c~~~K  107 (179)
T PF13908_consen   89 IAIVVLIVCFCCCCCCLYK  107 (179)
T ss_pred             HHHHHhHhhheeccccccc
Confidence            3467788888888888543

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=81.16  E-value=1.1  Score=43.41  Aligned_cols=27  Identities=26%  Similarity=0.413  Sum_probs=13.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 039012          237 KEIIIAVVATAVTTFALVALLFLCCLKSRS  266 (876)
Q Consensus       237 ktv~iav~~ta~~t~~~a~~~fl~c~~~r~  266 (876)
                      ..+++||+++.+.  ++ +|++|||+|.||
T Consensus        67 ~~Ii~gv~aGvIg--~I-lli~y~irR~~K   93 (122)
T PF01102_consen   67 IGIIFGVMAGVIG--II-LLISYCIRRLRK   93 (122)
T ss_dssp             HHHHHHHHHHHHH--HH-HHHHHHHHHHS-
T ss_pred             eehhHHHHHHHHH--HH-HHHHHHHHHHhc
Confidence            4555555554432  22 356666666554

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PRK15313 autotransport protein MisL; Provisional

Probab=80.87  E-value=3.7  Score=51.64  Aligned_cols=13  Identities=15%  Similarity=-0.005  Sum_probs=5.4

Q ss_pred             ceeccchhhhhcc
Q 039012          628 AFKLDTLLKLADV  640 (876)
Q Consensus       628 GFkL~SL~KL~d~  640 (876)
                      ||-+|+..+..-.
T Consensus       771 G~YVDswlQynwF  783 (955)
T PRK15313        771 GAYVDTWMLYNWF  783 (955)
T ss_pred             cEEEeeeeeeeee
Confidence            4444444444333

>PRK15313 autotransport protein MisL; Provisional

Probab=80.81  E-value=3.3  Score=51.99  Aligned_cols=7  Identities=14%  Similarity=0.548  Sum_probs=3.5

Q ss_pred             ccccccc
Q 039012          432 AMVWHEI  438 (876)
Q Consensus       432 ~TIW~~i  438 (876)
                      ..+|..+
T Consensus       677 ~s~WlR~  683 (955)
T PRK15313        677 TSLWMRN  683 (955)
T ss_pred             CceEEEe
Confidence            3456543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	876
2j1d_G	483	Crystallization Of Hdaam1 C-Terminal Fragment Lengt		2e-13
2z6e_A	419	Crystal Structure Of Human Daam1 Fh2 Length = 419		4e-13
3o4x_E	467	Crystal Structure Of Complex Between Amino And Carb		5e-12
3obv_E	457	Autoinhibited Formin Mdia1 Structure Length = 457		1e-11
4eah_A	402	Crystal Structure Of The Formin Homology 2 Domain O		6e-11
1v9d_A	340	Crystal Structure Of The Core Fh2 Domain Of Mouse M		2e-10

>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment Length = 483

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 108/253 (42%), Gaps = 16/253 (6%)
Query: 417 LKPFFWDKVLASPDHAMVWHEISSGSF-----------QFNEEMIESLFGYKPATKSRNE 465
           LK F W K+  +     VW EI                 F+    +  F     +K +  
Sbjct: 15  LKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEA 74
Query: 466 CGKSNSVSSESSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDAXXXXXXXXXXXXXXXX 525
               +++SS+   + + +ID R+AQN +I+L  L L+++E+  A                
Sbjct: 75  DAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLE 134
Query: 526 KMAPTTDEELKLRLF---PGDISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSS 582
           ++     E+  + L      ++ ++  A+RFL  +  I    +R++SL F     E ++ 
Sbjct: 135 QLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAERVAE 194
Query: 583 IKDSFKTLEVACDXXXXXXXXXXXXEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKG 642
           +K   + +    +            E VL  GN MN G  RG A  FK+ +L K+AD K 
Sbjct: 195 VKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKGQ-RGNAYGFKISSLNKIADTKS 253
Query: 643 T-DGKTTLLHFVV 654
           + D   TLLH+++
Sbjct: 254 SIDKNITLLHYLI 266

>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2 Length = 419

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 108/253 (42%), Gaps = 16/253 (6%)
Query: 417 LKPFFWDKVLASPDHAMVWHEISSGSF-----------QFNEEMIESLFGYKPATKSRNE 465
           LK F W K+  +     VW EI                 F+    +  F     +K +  
Sbjct: 17  LKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEA 76
Query: 466 CGKSNSVSSESSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDAXXXXXXXXXXXXXXXX 525
               +++SS+   + + +ID R+AQN +I+L  L L+++E+  A                
Sbjct: 77  DAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLE 136
Query: 526 KMAPTTDEELKLRLF---PGDISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSS 582
           ++     E+  + L      ++ ++  A+RFL  +  I    +R++SL F     E ++ 
Sbjct: 137 QLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAERVAE 196
Query: 583 IKDSFKTLEVACDXXXXXXXXXXXXEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKG 642
           +K   + +    +            E VL  GN MN G  RG A  FK+ +L K+AD K 
Sbjct: 197 VKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKGQ-RGNAYGFKISSLNKIADTKS 255
Query: 643 T-DGKTTLLHFVV 654
           + D   TLLH+++
Sbjct: 256 SIDKNITLLHYLI 268

>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy Terminal Fragments Of Mdia1 Length = 467

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 93/462 (20%), Positives = 162/462 (35%), Gaps = 57/462 (12%)
Query: 422 WDKVLASP-DHAMVWHEISSGSFQFNEEMIESLFGYKPATKSR-----NECGKSNSVSSE 475
           W K +A        W ++    F+ NE   +    +   TK+       E G+      +
Sbjct: 34  WSKFVAEDLSQDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQEGGEEKKSVQK 93
Query: 476 SSAQYIQIIDTRKAQNLSIILRALNLTSEEV--VDAXXXXXXXXXXXXXXXXKMAPTTDE 533
              + ++++D++ AQNLSI L +  +  +E+  V                  K  P  ++
Sbjct: 94  KKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQ 153
Query: 534 ELKLRLFPGDISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVA 593
              L     +   L  +E+F   +  +P    R+ +++F     E + +IK    ++  A
Sbjct: 154 LKMLSELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAA 213
Query: 594 CDXXXXXXXXXXXXEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLHFV 653
           C+            E  L  GN MN G+   GA  F +  L KL D K  D K TLLHF+
Sbjct: 214 CEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFL 273
Query: 654 VQEIIRSEGIXXXXXXXXXXXXXXXXLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELE 713
                                         E  E+  P+            V     EL 
Sbjct: 274 A-----------------------------ELCENDHPE------------VLKFPDELA 292
Query: 714 DVKKAAVIDADXXXXXXXXXXXXXXXXXXFLDTEMKNKDEKTEFYNVVTKFLERAETDIA 773
            V+KA+ + A+                   +       DEK +F   +T F++ A+    
Sbjct: 293 HVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYN 352
Query: 774 WLLEEEKRIMALVKSTADYFHGNSGKDEGLRLFTIVRDFLIMLDKSCKQVKITTKPSRTS 833
            L      +  L K   DYF  +  K      F  + +F  M  ++ K+ +   +     
Sbjct: 353 KLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKM 412
Query: 834 RKETLTSSPSRENRQPSSDMRQKLFPAIEDRRMDFSSSDDES 875
           R+  L    + + R      R++L        +D ++  DE+
Sbjct: 413 RRAKLAKEKAEKERLEKQQKREQL--------IDMNAEGDET 446

>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure Length = 457

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 93/462 (20%), Positives = 162/462 (35%), Gaps = 57/462 (12%)
Query: 422 WDKVLASP-DHAMVWHEISSGSFQFNEEMIESLFGYKPATKSR-----NECGKSNSVSSE 475
           W K +A        W ++    F+ NE   +    +   TK+       E G+      +
Sbjct: 15  WSKFVAEDLSQDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQEGGEEKKSVQK 74
Query: 476 SSAQYIQIIDTRKAQNLSIILRALNLTSEEV--VDAXXXXXXXXXXXXXXXXKMAPTTDE 533
              + ++++D++ AQNLSI L +  +  +E+  V                  K  P  ++
Sbjct: 75  KKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQ 134
Query: 534 ELKLRLFPGDISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVA 593
              L     +   L  +E+F   +  +P    R+ +++F     E + +IK    ++  A
Sbjct: 135 LKMLSELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAA 194
Query: 594 CDXXXXXXXXXXXXEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLHFV 653
           C+            E  L  GN MN G+   GA  F +  L KL D K  D K TLLHF+
Sbjct: 195 CEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFL 254
Query: 654 VQEIIRSEGIXXXXXXXXXXXXXXXXLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELE 713
                                         E  E+  P+            V     EL 
Sbjct: 255 A-----------------------------ELCENDHPE------------VLKFPDELA 273
Query: 714 DVKKAAVIDADXXXXXXXXXXXXXXXXXXFLDTEMKNKDEKTEFYNVVTKFLERAETDIA 773
            V+KA+ + A+                   +       DEK +F   +T F++ A+    
Sbjct: 274 HVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYN 333
Query: 774 WLLEEEKRIMALVKSTADYFHGNSGKDEGLRLFTIVRDFLIMLDKSCKQVKITTKPSRTS 833
            L      +  L K   DYF  +  K      F  + +F  M  ++ K+ +   +     
Sbjct: 334 KLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKM 393
Query: 834 RKETLTSSPSRENRQPSSDMRQKLFPAIEDRRMDFSSSDDES 875
           R+  L    + + R      R++L        +D ++  DE+
Sbjct: 394 RRAKLAKEKAEKERLEKQQKREQL--------IDMNAEGDET 427

>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3 Bound To Actin Length = 402

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 85/193 (44%), Gaps = 8/193 (4%)
Query: 466 CGKSNSVSSESSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDAXXXXXXXX--XXXXXX 523
           C K+ +  ++ +A  + +++  +A+NL+I LR    ++EE+  A                
Sbjct: 71  CSKNKT--AQKAASKVTLLEANRAKNLAITLRKAGRSAEEICRAIHTFDLQTLPVDFVEC 128
Query: 524 XXKMAPTTDEELKLRLFPGD---ISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDM 580
             +  PT  E   LR +  +   + +L   +RF+     +    +R+  + F+G+ Q+++
Sbjct: 129 LMRFLPTEAEVKLLRQYERERQPLEELAAEDRFMLLFSKVERLTQRMAGMAFLGNFQDNL 188
Query: 581 SSIKDSFKTLEVACDXXXXXXXXXXXXEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADV 640
             +      +  A              E +L  GN MN  + RG    FKL +L  L D 
Sbjct: 189 QMLTPQLNAIIAASASVKSSQKLKQMLEIILALGNYMN-SSKRGAVYGFKLQSLDLLLDT 247
Query: 641 KGTDGKTTLLHFV 653
           K TD K TLLHF+
Sbjct: 248 KSTDRKMTLLHFI 260

>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1 Length = 340

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 72/173 (41%), Gaps = 2/173 (1%)
Query: 485 DTRKAQNLSIILRALNLTSEEV--VDAXXXXXXXXXXXXXXXXKMAPTTDEELKLRLFPG 542
           D++ AQNLSI L +  +  +E+  V                  K  P  ++   L     
Sbjct: 13  DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 72
Query: 543 DISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDXXXXXXX 602
           +   L  +E+F   +  +P    R+ +++F     E + +IK    ++  AC+       
Sbjct: 73  EYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSEN 132
Query: 603 XXXXXEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQ 655
                E  L  GN MN G+   GA  F +  L KL D K  D K TLLHF+ +
Sbjct: 133 FSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAE 185

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	876
3obv_E	457	Protein diaphanous homolog 1; autoinhibition, acti	1e-106
2j1d_G	483	DAAM1, disheveled-associated activator of morphoge	1e-101
1v9d_A	340	Diaphanous protein homolog 1; helix bundle, protei	2e-95
1ux5_A	411	BNI1 protein; structural protein, FH2 actin cytosk	4e-76
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	8e-09
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	4e-08
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	6e-08
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	1e-07
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-07
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	3e-07
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	3e-07
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	4e-07
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	8e-07
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	1e-06
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	5e-06
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	5e-06
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	7e-06
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	5e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	8e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	1e-04
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-04
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	3e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	3e-08
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	1e-04
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	6e-08
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	5e-06
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	4e-05
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	5e-05
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	1e-04
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	1e-07
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	2e-07
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	5e-07
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	6e-07
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	1e-06
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	2e-06
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	3e-06
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	4e-06
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	1e-05
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	3e-05
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	7e-05
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	9e-05
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	1e-04
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	3e-04
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	6e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	9e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	9e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-04
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	4e-06
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	3e-04
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	4e-04
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	4e-06
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	1e-04
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	5e-04
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	6e-04
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	6e-04
3aqq_A	147	Calcium-regulated heat stable protein 1; compact b	5e-06
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	5e-06
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	8e-06
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-04
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	8e-06
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	8e-05
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	1e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	3e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	5e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	9e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	3e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	4e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	5e-04
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-05
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	5e-05
2wd6_A	349	Agglutinin receptor; cell adhesion, secreted, V-re	6e-05
1jvr_A	137	HTLV-II MA, MA, human T-cell leukemia virus type I	6e-05
1jvr_A	137	HTLV-II MA, MA, human T-cell leukemia virus type I	4e-04
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	1e-04
2kpy_A	108	Major pollen allergen ART V 1; defensin-like, poly	1e-04
2kpy_A	108	Major pollen allergen ART V 1; defensin-like, poly	4e-04
2kpy_A	108	Major pollen allergen ART V 1; defensin-like, poly	5e-04
1ei8_A	29	Collagen-like peptide (Pro-HYP-Gly)4-PG-(Pro-HYP-	2e-04
1ei8_A	29	Collagen-like peptide (Pro-HYP-Gly)4-PG-(Pro-HYP-	3e-04
1ei8_A	29	Collagen-like peptide (Pro-HYP-Gly)4-PG-(Pro-HYP-	4e-04
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	2e-04
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	2e-04
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	4e-04
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	3e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	3e-04
1cag_A	30	Collagen-like peptide; 1.85A {} SCOP: k.3.1.1 PDB:	4e-04
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	4e-04
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	6e-04
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	6e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	6e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	8e-04
3a58_A	320	Exocyst complex component SEC3; protein complex, P	8e-04

>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D Length = 457

 Score =  335 bits (861), Expect = e-106
 Identities = 103/458 (22%), Positives = 185/458 (40%), Gaps = 49/458 (10%)

Query: 414 KTKLKPFFWDKVLAS-PDHAMVWHEISSGSFQFNEEM--IESLFGYKPAT---KSRNECG 467
           + +L+   W K +A        W ++    F+ NE    +   F  +  T   K   E G
Sbjct: 7   EVQLRRPNWSKFVAEDLSQDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQEGG 66

Query: 468 KSNSVSSESSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDALEEGNE--LPLELLQTLL 525
           +      +   + ++++D++ AQNLSI L +  +  +E+ + + E NE  L   ++Q L+
Sbjct: 67  EEKKSVQKKKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLI 126

Query: 526 KMAPTTDEELKLRLFPGDISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKD 585
           K  P  ++   L     +   L  +E+F   +  +P    R+ +++F     E + +IK 
Sbjct: 127 KQMPEPEQLKMLSELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKP 186

Query: 586 SFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDG 645
              ++  AC++LR S  F  LLE  L  GN MN G+   GA  F +  L KL D K  D 
Sbjct: 187 EIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQ 246

Query: 646 KTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVV 705
           K TLLHF+                              E  E+  P+            V
Sbjct: 247 KMTLLHFLA-----------------------------ELCENDHPE------------V 265

Query: 706 SGLSTELEDVKKAAVIDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFL 765
                EL  V+KA+ + A+++  ++ ++   +   +  +       DEK +F   +T F+
Sbjct: 266 LKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFV 325

Query: 766 ERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEGLRLFTIVRDFLIMLDKSCKQVKI 825
           + A+     L      +  L K   DYF  +  K      F  + +F  M  ++ K+ + 
Sbjct: 326 KDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQK 385

Query: 826 TTKPSRTSRKETLTSSPSRENRQPSSDMRQKLFPAIED 863
             +     R+  L    + + R      R++L     +
Sbjct: 386 RRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAE 423

>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A Length = 483

 Score =  322 bits (828), Expect = e-101
 Identities = 107/470 (22%), Positives = 194/470 (41%), Gaps = 58/470 (12%)

Query: 414 KTKLKPFFWDKVLASPDHAMVWHEISSGSF--QFNEEMIESLFGYKPA---------TKS 462
              LK F W K+  +     VW EI         + E +E  F              +K 
Sbjct: 12  TNALKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQ 71

Query: 463 RNECGKSNSVSSESSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDALEEGNE---LPLE 519
           +      +++SS+   + + +ID R+AQN +I+L  L L+++E+  A+   +E   LP +
Sbjct: 72  KEADAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKD 131

Query: 520 LLQTLLKMAPTTDEELKLRLFPGDISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQED 579
           +L+ LLK  P   +   L     ++ ++  A+RFL  +  I    +R++SL F     E 
Sbjct: 132 MLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAER 191

Query: 580 MSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLAD 639
           ++ +K   + +    +++  S    +LLE VL  GN MN G  RG A  FK+ +L K+AD
Sbjct: 192 VAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKGQ-RGNAYGFKISSLNKIAD 250

Query: 640 VKGT-DGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYS 698
            K + D   TLLH+++                               VE+  P       
Sbjct: 251 TKSSIDKNITLLHYLI-----------------------------TIVENKYPS------ 275

Query: 699 ILGLQVVSGLSTELEDVKKAAVIDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTE-F 757
                 V  L+ EL D+ +AA ++   +   +S L + L   +  L+ +     +  + F
Sbjct: 276 ------VLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQPPQPGDKF 329

Query: 758 YNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEGLRLFTIVRDFLIMLD 817
            +VV++F+  A    + + +       L      +F   +GK +    F I   FL  + 
Sbjct: 330 VSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGKIQPDEFFGIFDQFLQAVS 389

Query: 818 KSCKQVKITTKPSRTSRKETLTSSPSRENRQPSSDMRQKLFPAIEDRRMD 867
           ++ ++ +   K      +     +  +E R+    MR+    + E    D
Sbjct: 390 EAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFD 439

>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1 Length = 340

 Score =  302 bits (774), Expect = 2e-95
 Identities = 88/378 (23%), Positives = 157/378 (41%), Gaps = 44/378 (11%)

Query: 474 SESSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDALEEGNE--LPLELLQTLLKMAPTT 531
           S+   + ++++D++ AQNLSI L +  +  +E+ + + E NE  L   ++Q L+K  P  
Sbjct: 2   SKKKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEP 61

Query: 532 DEELKLRLFPGDISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLE 591
           ++   L     +   L  +E+F   +  +P    R+ +++F     E + +IK    ++ 
Sbjct: 62  EQLKMLSELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVT 121

Query: 592 VACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLH 651
            AC++LR S  F  LLE  L  GN MN G+   GA  F +  L KL D K  D K TLLH
Sbjct: 122 AACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLH 181

Query: 652 FVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTE 711
           F+ +                               E+  P+            V     E
Sbjct: 182 FLAELC-----------------------------ENDHPE------------VLKFPDE 200

Query: 712 LEDVKKAAVIDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETD 771
           L  V+KA+ + A+++  ++ ++   +   +  +       DEK +F   +T F++ A+  
Sbjct: 201 LAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQ 260

Query: 772 IAWLLEEEKRIMALVKSTADYFHGNSGKDEGLRLFTIVRDFLIMLDKSCKQV-KITTKPS 830
              L      +  L K   DYF  +  K      F  + +F  M  ++ K+  K      
Sbjct: 261 YNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEE 320

Query: 831 RTSRKETLTSSPSRENRQ 848
           +  R +       +E  +
Sbjct: 321 KMRRAKLAKEKAEKERLE 338

>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A Length = 411

 Score =  253 bits (647), Expect = 4e-76
 Identities = 74/447 (16%), Positives = 140/447 (31%), Gaps = 89/447 (19%)

Query: 414 KTKLKPFFWDKVLASPDHAMVWHEISSGSF------QFNEEMIESLFGYKPATKSRNECG 467
             KLK   W+K+  + +   +W    +  F      +     +E  F  +          
Sbjct: 6   HKKLKQLHWEKLDCTDN--SIWGTGKAEKFADDLYEKGVLADLEKAFAAREI-------- 55

Query: 468 KSNSVSSESSAQYIQIIDTRKAQNLSIILRAL-NLTSEEVVDALEEGNE--LPLELLQTL 524
           KS +   +   Q I  +    +Q   I L    +L+  ++V  +   +   L    +   
Sbjct: 56  KSLASKRKEDLQKITFLSRDISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEF 115

Query: 525 L--------------KMAPTTDEELKLRLF------PGDISQLGPAERFLKTLV--DIPF 562
           L                AP + +   +R          D + L  A++    L+     +
Sbjct: 116 LSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPNDLQRADQIYLQLMVNLESY 175

Query: 563 AFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTY 622
              R+ +L  + S++ + + +    + ++ A   L+ S     +   +L  GN MND + 
Sbjct: 176 WGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTS- 234

Query: 623 RGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKS 682
              AQ FKL TL +L  +K T    T L++V +                           
Sbjct: 235 -KQAQGFKLSTLQRLTFIKDTTNSMTFLNYVEKI-------------------------- 267

Query: 683 EEFVEDSSPQSAEKYSILGLQVVSGLSTELEDVKKAAVIDADSVTATVSKLSTSLTKTKA 742
              V  + P              +   +ELE V     +  + +       S S+   + 
Sbjct: 268 ---VRLNYPS------------FNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVER 312

Query: 743 FLDTEMKNKDEKTE----FYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSG 798
            ++    +   K              L  A      L +E K  +   +S    +  +SG
Sbjct: 313 SVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSG 372

Query: 799 KDEGL-RLFTIVRDFLIMLDKSCKQVK 824
                   F    DF+    K+  Q  
Sbjct: 373 DKFAKISFFKKFADFINEYKKAQAQNL 399

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.4 bits (161), Expect = 3e-11
 Identities = 86/632 (13%), Positives = 168/632 (26%), Gaps = 203/632 (32%)

Query: 266 SKRIDPVKGQNDD----RPLLNSSLSAGMHLSSSVLLLAPYIFLFGSKTYNFTSWNLSFR 321
            + ID +    D       L  + LS        V       F+      N+  + L   
Sbjct: 48  KEEIDHIIMSKDAVSGTLRLFWTLLSKQ---EEMV-----QKFVEEVLRINY-KF-LMSP 97

Query: 322 FLTAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPM 381
             T     S MT                                R            +P 
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYN---------DNQVFAKYNVSRL-----------QPY 137

Query: 382 TGVQKPSPLGPHRQARSISSEGN-EVEGESGAAKTKL-------------KPF--FWDKV 425
             +++            +    N  ++G  G+ KT +               F  FW  +
Sbjct: 138 LKLRQ--------ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189

Query: 426 --LASPDHAM-----VWHEISSGSFQFNEEM------IES-------LFGYKPATKS--- 462
               SP+  +     + ++I       ++        I S       L   KP       
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 463 -RNECGKSNSVSSESSAQY--IQ---IIDTR-----------KAQNLSIILRALNLTSEE 505
             N       V +  +     +    ++ TR              ++S+   ++ LT +E
Sbjct: 250 LLN-------VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 506 VVDAL-----EEGNELPLELLQT----------LLKMAPTTDEELK-------LRLFPGD 543
           V   L         +LP E+L T           ++    T +  K         +    
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 544 ISQLGPAE--RFLKTL------VDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACD 595
           ++ L PAE  +    L        IP     +  + F     + M  +           +
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPT--ILLSLIWFDVIKSDVMVVV-----------N 409

Query: 596 KLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQ 655
           KL    L  K          +  + T      +  L+  +KL +          LH   +
Sbjct: 410 KLHKYSLVEK----------QPKESTIS--IPSIYLELKVKLENEYA-------LH---R 447

Query: 656 EIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKY--SILG--------LQVV 705
            I+           +   S            +D  P   ++Y  S +G         + +
Sbjct: 448 SIVDH-----YNIPKTFDS------------DDLIPPYLDQYFYSHIGHHLKNIEHPERM 490

Query: 706 SGLSTELEDVK--KAAVIDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTK 763
           +       D +  +  +    +       +  +L + K +      N  +     N +  
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550

Query: 764 FLERAETDIAWLLEEEKRIM--ALVKSTADYF 793
           FL + E ++  +  +   ++  AL+      F
Sbjct: 551 FLPKIEENL--ICSKYTDLLRIALMAEDEAIF 580

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.3 bits (153), Expect = 3e-10
 Identities = 46/350 (13%), Positives = 87/350 (24%), Gaps = 124/350 (35%)

Query: 46  LVIDD---KMVEQTF-VHCRNQLVGGEGTAELKSMLLTTRRISEAINDLPPQTKETFLDC 101
           LV+ +         F + C+              +LLTTR                  D 
Sbjct: 248 LVLLNVQNAKAWNAFNLSCK--------------ILLTTRFKQVT-------------DF 280

Query: 102 LKKSLHFHVSSEEAS--FTHWSIEYAQLLVSWLNAPRRYLAAELFAERSTKRASLPPVSD 159
           L  +   H+S +  S   T    E   LL+ +L+                +   LP    
Sbjct: 281 LSAATTTHISLDHHSMTLTP--DEVKSLLLKYLD---------------CRPQDLPREVL 323

Query: 160 SIALPPISVSIATPAPSRQRKGAPASSPSPKPRFHSPPTSPNKRPSPSPQPTAKKKAPPA 219
           +    P  +SI                                           K     
Sbjct: 324 TTN--PRRLSII---------AE---------SIRDGLA----TWDNWKHVNCDKLT--T 357

Query: 220 VI---VKNQPEKDQ----------DDDVRHKEIIIAVVATAVTTFALVALLFLCCLKSRS 266
           +I   +      +                   I+++++   V    ++ ++      S  
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 267 KRIDP-------------VKGQNDDRPLLNSSL----SAGMHLSSSVLLLAP---YIFLF 306
           ++  P             +K + ++   L+ S+    +      S  L+      Y +  
Sbjct: 418 EK-QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476

Query: 307 ----------GSKTYNFTSWNLSFRFLTAP--HSGSSMTEAQSSNEPPTL 344
                       +   F    L FRFL     H  ++   + S     TL
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL--NTL 524

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 1e-08
 Identities = 65/422 (15%), Positives = 126/422 (29%), Gaps = 133/422 (31%)

Query: 480 YIQIIDTRKAQNLSIILRALNLTSEEVVDALEEGNELPLELLQTLLKMAPTTDEELKLRL 539
           ++   D +  Q++    +++ L+ EE+   +   +                      LRL
Sbjct: 29  FVDNFDCKDVQDM---PKSI-LSKEEIDHIIMSKDA-----------------VSGTLRL 67

Query: 540 FPGDI---SQLGPAERFLKTLV--DIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVAC 594
           F        Q    ++F++ ++  +  F    I+      + Q   S +   +       
Sbjct: 68  F--WTLLSKQEEMVQKFVEEVLRINYKFLMSPIK------TEQRQPSMMTRMY---IEQR 116

Query: 595 DKL-RSSRLFLKL----LEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTL 649
           D+L   +++F K     L+  LK          R      +    + +  V G+ GKT +
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKL---------RQALLELRPAKNVLIDGVLGS-GKTWV 166

Query: 650 LHFVVQEIIRSEGIRAVR-------TARASHSTSS--ASLKS------EEFVEDSSPQSA 694
                 ++  S  ++            +  +S  +    L+         +   S   S 
Sbjct: 167 ----ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 695 EKYSILGLQ-VVSGLSTE---------LEDVKKAAVIDA-D------------SVTATVS 731
            K  I  +Q  +  L            L +V+ A   +A +             VT  +S
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282

Query: 732 KLSTSLTKTKAFLDTEMK--NKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALV--- 786
               + T T   LD        DE      ++ K+L+    D   L  E           
Sbjct: 283 ----AATTTHISLDHHSMTLTPDEVKS---LLLKYLDCRPQD---LPREVLTTNPRRLSI 332

Query: 787 --------KSTADYFHGNSGKDEGLRLFTIVRDFLIMLD--------KSC----KQVKIT 826
                    +T D +  +   D   +L TI+   L +L+                   I 
Sbjct: 333 IAESIRDGLATWDNWK-HVNCD---KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388

Query: 827 TK 828
           T 
Sbjct: 389 TI 390

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 3e-04
 Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 17/123 (13%)

Query: 744 LDTEMKNKDEKTEFYNVVTKFLE--RAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDE 801
           +D E      +  + ++++ F +      D   + +  K I  L K   D+   +     
Sbjct: 7   MDFETGEHQYQ--YKDILSVFEDAFVDNFDCKDVQDMPKSI--LSKEEIDHIIMSKDAVS 62

Query: 802 GLRLFTIVRDFLIMLDKSCKQVKITTKPSRTSRKETLTSSPSRENRQPSSDM------RQ 855
           G         F  +L K  + V+   +       + L S    E RQPS         R 
Sbjct: 63  GTLRL-----FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117

Query: 856 KLF 858
           +L+
Sbjct: 118 RLY 120

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 56.2 bits (135), Expect = 8e-09
 Identities = 18/66 (27%), Positives = 24/66 (36%)

Query: 324 TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTG 383
            A  + ++ + A +  + P     PPPP   G PPP     P    PP  P     P  G
Sbjct: 151 AAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRG 210

Query: 384 VQKPSP 389
                P
Sbjct: 211 TPMGMP 216

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 53.9 bits (129), Expect = 4e-08
 Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 1/68 (1%)

Query: 325 APHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPM-TG 383
            P    ++  A ++       AP   PP  G PPPP      PP     P     PM   
Sbjct: 143 TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPP 202

Query: 384 VQKPSPLG 391
           +  P   G
Sbjct: 203 MGIPPGRG 210

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 53.5 bits (128), Expect = 6e-08
 Identities = 18/61 (29%), Positives = 23/61 (37%)

Query: 335 AQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHR 394
           A ++    ++A  P   PP    PPPP  R  PP     P P  +P  G     P G   
Sbjct: 152 AAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGT 211

Query: 395 Q 395
            
Sbjct: 212 P 212

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 16/64 (25%), Positives = 17/64 (26%), Gaps = 2/64 (3%)

Query: 329 GSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPS 388
           G S             AA           P   PP    P PP     PP  M G   P 
Sbjct: 136 GPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMG--PPP 193

Query: 389 PLGP 392
            + P
Sbjct: 194 GMRP 197

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 51.6 bits (123), Expect = 2e-07
 Identities = 14/65 (21%), Positives = 15/65 (23%)

Query: 328 SGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKP 387
           S   MT           AA            PP    P PP     P P         +P
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRP 197

Query: 388 SPLGP 392
               P
Sbjct: 198 PMGPP 202

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 51.6 bits (123), Expect = 3e-07
 Identities = 8/54 (14%), Positives = 9/54 (16%)

Query: 341 PPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHR 394
            P                    P   PP     P P  +         P    R
Sbjct: 143 TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMR 196

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 51.6 bits (123), Expect = 3e-07
 Identities = 16/56 (28%), Positives = 20/56 (35%)

Query: 341 PPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHRQA 396
             T +    P   P     PPPP  R   PP +  PPP     +  P  + P R  
Sbjct: 156 AATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGT 211

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 51.2 bits (122), Expect = 4e-07
 Identities = 16/64 (25%), Positives = 21/64 (32%)

Query: 326 PHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQ 385
             + +S+  A +   P     PPP      PP    PP    P        PP   T + 
Sbjct: 155 AAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMG 214

Query: 386 KPSP 389
            P P
Sbjct: 215 MPPP 218

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 50.0 bits (119), Expect = 8e-07
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 341 PPTLAAPPPPPPPPGPPPPPPPPRPRPPA-PPKVPAPPPKPMTGVQKPSP 389
           PP +    PPP   GPPP   PP   P   PP    P   P  G++ P P
Sbjct: 176 PPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPP 225

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 4/55 (7%)

Query: 341 PPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPM---TGVQKPSPLGP 392
            PT   P    PPP      PPP    P PP +  P   PM    G   P  + P
Sbjct: 164 APTQYPPGRGGPPPPMGRGAPPPGMMGP-PPGMRPPMGPPMGIPPGRGTPMGMPP 217

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 47.7 bits (113), Expect = 5e-06
 Identities = 11/61 (18%), Positives = 13/61 (21%), Gaps = 5/61 (8%)

Query: 341 PPTLAAPP-----PPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHRQ 395
           P  LA P      P      P            A   +   P +   G   P P      
Sbjct: 124 PAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGA 183

Query: 396 A 396
            
Sbjct: 184 P 184

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 47.7 bits (113), Expect = 5e-06
 Identities = 13/68 (19%), Positives = 17/68 (25%), Gaps = 1/68 (1%)

Query: 325 APHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGV 384
           A  +G        S +  T                     P    P +   PPP    G 
Sbjct: 125 AGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGR-GA 183

Query: 385 QKPSPLGP 392
             P  +GP
Sbjct: 184 PPPGMMGP 191

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 47.3 bits (112), Expect = 7e-06
 Identities = 7/56 (12%), Positives = 12/56 (21%)

Query: 341 PPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHRQA 396
            P+     P                   AP + P     P   + + +P       
Sbjct: 136 GPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGP 191

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 44.6 bits (105), Expect = 5e-05
 Identities = 12/53 (22%), Positives = 13/53 (24%)

Query: 326 PHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPP 378
                 M                 PP  P    PP    P    PP +  PPP
Sbjct: 173 GGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPP 225

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 43.9 bits (103), Expect = 8e-05
 Identities = 11/56 (19%), Positives = 11/56 (19%), Gaps = 4/56 (7%)

Query: 341 PPTLAAPPPPPPPPGPPPPPP----PPRPRPPAPPKVPAPPPKPMTGVQKPSPLGP 392
           P   A      P  G   P      P      A     A         Q P   G 
Sbjct: 119 PMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGG 174

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 9/52 (17%), Positives = 10/52 (19%)

Query: 341 PPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGP 392
            P   AP     P      P      P     V A        +       P
Sbjct: 118 VPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYP 169

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 13/44 (29%), Positives = 14/44 (31%)

Query: 341 PPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGV 384
                 P   PP   P   PP        PP    PPP  M G+
Sbjct: 187 GMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGL 230

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 19/69 (27%), Positives = 22/69 (31%), Gaps = 2/69 (2%)

Query: 331 SMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPP--KPMTGVQKPS 388
           SMT      +   +A  P      GP       R  P   P   AP     P+ GV  PS
Sbjct: 79  SMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPS 138

Query: 389 PLGPHRQAR 397
                 Q R
Sbjct: 139 QQVMTPQGR 147

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 56.0 bits (134), Expect = 3e-08
 Identities = 20/102 (19%), Positives = 28/102 (27%)

Query: 312 NFTSWNLSFRFLTAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPP 371
           N+    LS     A      MT+ Q    PP   +   P   PG                
Sbjct: 3   NYLRRRLSDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVA 62

Query: 372 KVPAPPPKPMTGVQKPSPLGPHRQARSISSEGNEVEGESGAA 413
              AP P    G    S L    +  + ++     E   G +
Sbjct: 63  SPAAPSPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGS 104

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 44.5 bits (104), Expect = 1e-04
 Identities = 16/89 (17%), Positives = 22/89 (24%)

Query: 331 SMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPL 390
           S +   ++     +     P PPP PP    P      A                     
Sbjct: 10  SDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSP 69

Query: 391 GPHRQARSISSEGNEVEGESGAAKTKLKP 419
           G        SS  N V+  + AA      
Sbjct: 70  GSSGGGGFFSSLSNAVKQTTAAAAATFSE 98

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 53.3 bits (127), Expect = 6e-08
 Identities = 13/94 (13%), Positives = 17/94 (18%)

Query: 326 PHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQ 385
              G   T         +      PP   G    P       P       P         
Sbjct: 7   KPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPH 66

Query: 386 KPSPLGPHRQARSISSEGNEVEGESGAAKTKLKP 419
                 PH          +    +    KT +K 
Sbjct: 67  GGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKH 100

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 47.5 bits (112), Expect = 5e-06
 Identities = 15/91 (16%), Positives = 17/91 (18%)

Query: 329 GSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPS 388
           GS              +  P    P G   PP                P     G     
Sbjct: 1   GSKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGG 60

Query: 389 PLGPHRQARSISSEGNEVEGESGAAKTKLKP 419
             G           G    G+ G      KP
Sbjct: 61  GWGQPHGGGWGQPHGGGGWGQGGTHGQWNKP 91

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 10/72 (13%), Positives = 13/72 (18%), Gaps = 3/72 (4%)

Query: 324 TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTG 383
           T             +  PP        P   G   P      +P          P     
Sbjct: 14  TGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGG---GWGQPHGGGW 70

Query: 384 VQKPSPLGPHRQ 395
            Q     G  + 
Sbjct: 71  GQPHGGGGWGQG 82

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 44.4 bits (104), Expect = 5e-05
 Identities = 8/67 (11%), Positives = 12/67 (17%)

Query: 325 APHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGV 384
               G    +                P   G   P                 P KP T +
Sbjct: 39  GQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNM 98

Query: 385 QKPSPLG 391
           +  +   
Sbjct: 99  KHVAGAA 105

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 9/64 (14%), Positives = 11/64 (17%)

Query: 326 PHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQ 385
           PH G            P       P    G        +   P+ PK             
Sbjct: 49  PHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAG 108

Query: 386 KPSP 389
               
Sbjct: 109 AVVG 112

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 52.4 bits (125), Expect = 1e-07
 Identities = 18/81 (22%), Positives = 25/81 (30%)

Query: 333 TEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGP 392
              Q+   PP     P P P P P PP   P       PK    P       ++P     
Sbjct: 46  EPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVK 105

Query: 393 HRQARSISSEGNEVEGESGAA 413
             ++R  S   N       ++
Sbjct: 106 PVESRPASPFENTAPARLTSS 126

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 20/78 (25%), Positives = 25/78 (32%)

Query: 312 NFTSWNLSFRFLTAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPP 371
           +  S +            S      +  EPP    PPP P     P P P P P   AP 
Sbjct: 18  SHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPV 77

Query: 372 KVPAPPPKPMTGVQKPSP 389
            +  P PKP    +    
Sbjct: 78  VIEKPKPKPKPKPKPVKK 95

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 50.9 bits (121), Expect = 5e-07
 Identities = 19/80 (23%), Positives = 22/80 (27%)

Query: 340 EPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHRQARSI 399
           EP     P P P P  P   P       P P   P P  K     ++       R A   
Sbjct: 56  EPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPF 115

Query: 400 SSEGNEVEGESGAAKTKLKP 419
            +        S A     KP
Sbjct: 116 ENTAPARLTSSTATAATSKP 135

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 50.5 bits (120), Expect = 6e-07
 Identities = 18/70 (25%), Positives = 20/70 (28%)

Query: 323 LTAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMT 382
           L  P +     E     EP     P PP   P     P P     P P K     PK   
Sbjct: 45  LEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDV 104

Query: 383 GVQKPSPLGP 392
              +  P  P
Sbjct: 105 KPVESRPASP 114

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 17/62 (27%), Positives = 22/62 (35%)

Query: 331 SMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPL 390
           +  E   + +PP      P P P   P PP         P   P P PKP+  VQ+    
Sbjct: 43  ADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKR 102

Query: 391 GP 392
             
Sbjct: 103 DV 104

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 12/62 (19%), Positives = 16/62 (25%)

Query: 331 SMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPL 390
           +  + +          P   P P   P P PP           P P PKP    +     
Sbjct: 41  TPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQP 100

Query: 391 GP 392
             
Sbjct: 101 KR 102

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 22/86 (25%), Positives = 29/86 (33%), Gaps = 1/86 (1%)

Query: 331 SMTEAQSSNEPPTLAAPPPPPPPPGPPPPP-PPPRPRPPAPPKVPAPPPKPMTGVQKPSP 389
           +M        P  +  PP P   P P P P P P    P   + P P PKP     K   
Sbjct: 38  TMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQ 97

Query: 390 LGPHRQARSISSEGNEVEGESGAAKT 415
             P R  + + S        +  A+ 
Sbjct: 98  EQPKRDVKPVESRPASPFENTAPARL 123

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 47.8 bits (113), Expect = 4e-06
 Identities = 13/75 (17%), Positives = 23/75 (30%)

Query: 340 EPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHRQARSI 399
           EPP  A      P P P P P P +     P +   P         + +       + + 
Sbjct: 70  EPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTAT 129

Query: 400 SSEGNEVEGESGAAK 414
           ++    V   +   +
Sbjct: 130 AATSKPVTSVASGPR 144

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 12/53 (22%), Positives = 15/53 (28%)

Query: 340 EPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGP 392
               +      PP    PPP P   P P   P    P   P+   +      P
Sbjct: 36  SVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKP 88

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 45.5 bits (107), Expect = 3e-05
 Identities = 15/90 (16%), Positives = 20/90 (22%)

Query: 324 TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTG 383
             P       E +    P      P     P P P P P   +           P     
Sbjct: 52  QPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRP 111

Query: 384 VQKPSPLGPHRQARSISSEGNEVEGESGAA 413
                   P R   S ++        S A+
Sbjct: 112 ASPFENTAPARLTSSTATAATSKPVTSVAS 141

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 44.3 bits (104), Expect = 7e-05
 Identities = 15/66 (22%), Positives = 21/66 (31%)

Query: 324 TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTG 383
            +  S   + E  +  +P ++    P    P     PPP     P P   P P P     
Sbjct: 17  GSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAP 76

Query: 384 VQKPSP 389
           V    P
Sbjct: 77  VVIEKP 82

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 43.9 bits (103), Expect = 9e-05
 Identities = 11/80 (13%), Positives = 18/80 (22%)

Query: 340 EPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHRQARSI 399
           EP        P     P P P P         + P    KP+                + 
Sbjct: 66  EPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTS 125

Query: 400 SSEGNEVEGESGAAKTKLKP 419
           S+          +  +  + 
Sbjct: 126 STATAATSKPVTSVASGPRA 145

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 12/80 (15%), Positives = 18/80 (22%)

Query: 340 EPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHRQARSI 399
                     P P P P P P       P     P                     A + 
Sbjct: 72  PKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAA 131

Query: 400 SSEGNEVEGESGAAKTKLKP 419
           +S+          A ++ +P
Sbjct: 132 TSKPVTSVASGPRALSRNQP 151

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 16/75 (21%), Positives = 21/75 (28%), Gaps = 12/75 (16%)

Query: 327 HSGSSMTEAQSSNEPPTLAAP------------PPPPPPPGPPPPPPPPRPRPPAPPKVP 374
           HS   +      +    +  P            P    PP    PPP P   P   P+  
Sbjct: 9   HSSGLVPRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPI 68

Query: 375 APPPKPMTGVQKPSP 389
             PPK    V +   
Sbjct: 69  PEPPKEAPVVIEKPK 83

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 41.2 bits (96), Expect = 6e-04
 Identities = 10/63 (15%), Positives = 11/63 (17%)

Query: 334 EAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPH 393
           E       P           P     P   RP  P     PA             P+   
Sbjct: 80  EKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSV 139

Query: 394 RQA 396
              
Sbjct: 140 ASG 142

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 49.8 bits (118), Expect = 3e-06
 Identities = 9/68 (13%), Positives = 11/68 (16%)

Query: 325 APHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGV 384
           A  S   M        P         P                        P   P   +
Sbjct: 38  AGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYM 97

Query: 385 QKPSPLGP 392
           Q   P+  
Sbjct: 98  QPQVPVQM 105

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 48.7 bits (115), Expect = 7e-06
 Identities = 8/69 (11%), Positives = 16/69 (23%)

Query: 325 APHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGV 384
            P    +            ++      PP G  P     +   PA  ++     +  T +
Sbjct: 21  TPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSM 80

Query: 385 QKPSPLGPH 393
                    
Sbjct: 81  NDMHLHNVP 89

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 48.7 bits (115), Expect = 9e-06
 Identities = 5/66 (7%), Positives = 9/66 (13%)

Query: 324 TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTG 383
            A                P++       P                    +   P      
Sbjct: 36  AAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNA 95

Query: 384 VQKPSP 389
             +P  
Sbjct: 96  YMQPQV 101

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 48.3 bits (114), Expect = 1e-05
 Identities = 8/68 (11%), Positives = 11/68 (16%)

Query: 325 APHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGV 384
           A         A   +       P    P  G      P + +              M   
Sbjct: 27  AQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLH 86

Query: 385 QKPSPLGP 392
             P     
Sbjct: 87  NVPLVDPN 94

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 48.3 bits (114), Expect = 1e-05
 Identities = 8/61 (13%), Positives = 13/61 (21%)

Query: 336 QSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHRQ 395
                PP  A P         P      +    A   +       +  V   + + P   
Sbjct: 43  GQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVP 102

Query: 396 A 396
            
Sbjct: 103 V 103

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 47.9 bits (113), Expect = 1e-05
 Identities = 8/72 (11%), Positives = 14/72 (19%)

Query: 324 TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTG 383
                 ++  +  +   PP   A           PP              PA        
Sbjct: 14  LQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQI 73

Query: 384 VQKPSPLGPHRQ 395
            Q  + +     
Sbjct: 74  DQATTSMNDMHL 85

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 47.9 bits (113), Expect = 1e-05
 Identities = 11/80 (13%), Positives = 19/80 (23%)

Query: 324 TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTG 383
             P  G       +  +                    P   P     P+VP     P+  
Sbjct: 52  AVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQ 111

Query: 384 VQKPSPLGPHRQARSISSEG 403
            Q+P     + Q  +   + 
Sbjct: 112 QQQPMAAPAYGQPSAAMGQN 131

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 47.9 bits (113), Expect = 1e-05
 Identities = 13/79 (16%), Positives = 20/79 (25%), Gaps = 3/79 (3%)

Query: 325 APHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGV 384
            P  G+  +  Q     P                        P   P     P  P+   
Sbjct: 47  MPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPV--- 103

Query: 385 QKPSPLGPHRQARSISSEG 403
           Q  +PL   +Q  +  + G
Sbjct: 104 QMGTPLQQQQQPMAAPAYG 122

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 47.5 bits (112), Expect = 2e-05
 Identities = 11/62 (17%), Positives = 14/62 (22%)

Query: 335 AQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHR 394
            Q+  +    A P   P    PP  P             P      M   Q  +P     
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69

Query: 395 QA 396
             
Sbjct: 70  HQ 71

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 47.1 bits (111), Expect = 2e-05
 Identities = 13/67 (19%), Positives = 21/67 (31%)

Query: 326 PHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQ 385
             + +SM +    N P         P  P     P   + +P A P    P       ++
Sbjct: 74  DQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMR 133

Query: 386 KPSPLGP 392
             + L P
Sbjct: 134 PMNQLYP 140

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 46.7 bits (110), Expect = 4e-05
 Identities = 6/68 (8%), Positives = 12/68 (17%)

Query: 325 APHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGV 384
            P   ++   +      P   A P         P       +                 +
Sbjct: 31  PPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPL 90

Query: 385 QKPSPLGP 392
             P+    
Sbjct: 91  VDPNAYMQ 98

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 46.4 bits (109), Expect = 4e-05
 Identities = 8/78 (10%), Positives = 17/78 (21%)

Query: 324 TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTG 383
                  +  + Q   +                P   P    +P  P ++  P  +    
Sbjct: 56  MGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQP 115

Query: 384 VQKPSPLGPHRQARSISS 401
           +  P+   P         
Sbjct: 116 MAAPAYGQPSAAMGQNMR 133

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 46.4 bits (109), Expect = 4e-05
 Identities = 11/65 (16%), Positives = 16/65 (24%)

Query: 337 SSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHRQA 396
            +       A P   P    PP  P           +P     P  G Q+       +  
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70

Query: 397 RSISS 401
           + I  
Sbjct: 71  QQIDQ 75

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 46.0 bits (108), Expect = 6e-05
 Identities = 9/67 (13%), Positives = 14/67 (20%)

Query: 326 PHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQ 385
           P +     +  +  + P    PP  P   G         P+   P         P     
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69

Query: 386 KPSPLGP 392
                  
Sbjct: 70  HQQIDQA 76

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 45.6 bits (107), Expect = 7e-05
 Identities = 8/79 (10%), Positives = 14/79 (17%)

Query: 324 TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTG 383
           +           +  ++    A            P   P     P  P     P +    
Sbjct: 55  SMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQ 114

Query: 384 VQKPSPLGPHRQARSISSE 402
                  G    A   +  
Sbjct: 115 PMAAPAYGQPSAAMGQNMR 133

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 45.6 bits (107), Expect = 7e-05
 Identities = 12/70 (17%), Positives = 16/70 (22%)

Query: 335 AQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHR 394
           AQ            P    P   P            P   A P         P+    H+
Sbjct: 12  AQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQ 71

Query: 395 QARSISSEGN 404
           Q    ++  N
Sbjct: 72  QIDQATTSMN 81

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 45.2 bits (106), Expect = 9e-05
 Identities = 5/72 (6%), Positives = 13/72 (18%)

Query: 325 APHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGV 384
              +G S  +     +    +        P              +   +       +   
Sbjct: 35  PAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPN 94

Query: 385 QKPSPLGPHRQA 396
               P  P +  
Sbjct: 95  AYMQPQVPVQMG 106

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.8 bits (105), Expect = 1e-04
 Identities = 7/71 (9%), Positives = 12/71 (16%)

Query: 326 PHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQ 385
                    A +      +  PP    P         P           A        + 
Sbjct: 27  AQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLH 86

Query: 386 KPSPLGPHRQA 396
               + P+   
Sbjct: 87  NVPLVDPNAYM 97

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.8 bits (105), Expect = 1e-04
 Identities = 6/69 (8%), Positives = 10/69 (14%)

Query: 335 AQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHR 394
           A  S     +      P         P          +                    + 
Sbjct: 38  AGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYM 97

Query: 395 QARSISSEG 403
           Q +     G
Sbjct: 98  QPQVPVQMG 106

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.0 bits (103), Expect = 2e-04
 Identities = 10/70 (14%), Positives = 14/70 (20%)

Query: 326 PHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQ 385
                 + +A +S     L   P   P     P  P     P    + P   P       
Sbjct: 67  EQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSA 126

Query: 386 KPSPLGPHRQ 395
                     
Sbjct: 127 AMGQNMRPMN 136

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 5/68 (7%), Positives = 9/68 (13%), Gaps = 1/68 (1%)

Query: 325 APHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGV 384
            P    +                 P         P      +        +     +  V
Sbjct: 30  MPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQA-TTSMNDMHLHNV 88

Query: 385 QKPSPLGP 392
               P   
Sbjct: 89  PLVDPNAY 96

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 43.7 bits (102), Expect = 3e-04
 Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 3/68 (4%)

Query: 332 MTEAQSSNEPPTLAAPPPPPPPPGPPP---PPPPPRPRPPAPPKVPAPPPKPMTGVQKPS 388
           M+  +    P           P   P    PP  P     +  ++  PP   +  + +  
Sbjct: 1   MSHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQ 60

Query: 389 PLGPHRQA 396
            L P ++ 
Sbjct: 61  FLTPAQEQ 68

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.5 bits (99), Expect = 6e-04
 Identities = 12/83 (14%), Positives = 23/83 (27%), Gaps = 1/83 (1%)

Query: 322 FLTAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPM 381
           FLT           Q++     +     P   P     P  P  +   P +    P    
Sbjct: 61  FLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVP-VQMGTPLQQQQQPMAAP 119

Query: 382 TGVQKPSPLGPHRQARSISSEGN 404
              Q  + +G + +  +     +
Sbjct: 120 AYGQPSAAMGQNMRPMNQLYPID 142

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.5 bits (99), Expect = 7e-04
 Identities = 9/67 (13%), Positives = 16/67 (23%)

Query: 330 SSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSP 389
            +  +   +  P    A   PP  P            PP          + +T  Q+   
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70

Query: 390 LGPHRQA 396
               +  
Sbjct: 71  QQIDQAT 77

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.5 bits (99), Expect = 7e-04
 Identities = 13/74 (17%), Positives = 20/74 (27%)

Query: 325 APHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGV 384
           A  S + M         P     P  P   G P          PA  +  A   + M  +
Sbjct: 76  ATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPM 135

Query: 385 QKPSPLGPHRQARS 398
            +  P+    +   
Sbjct: 136 NQLYPIDLLTELPP 149

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 46.8 bits (111), Expect = 4e-06
 Identities = 14/80 (17%), Positives = 19/80 (23%), Gaps = 1/80 (1%)

Query: 329 GSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKV-PAPPPKPMTGVQKP 387
           GSS      S+      +  P       P        +  AP    PAP      G    
Sbjct: 2   GSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGY 61

Query: 388 SPLGPHRQARSISSEGNEVE 407
              G     +     G   +
Sbjct: 62  GSAGTSVTLQLDDGSGRTYQ 81

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 8/57 (14%), Positives = 10/57 (17%)

Query: 324 TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKP 380
           +  H   S       +  P       P            P    PAP          
Sbjct: 4   SQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGG 60

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 8/57 (14%), Positives = 11/57 (19%)

Query: 324 TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKP 380
              HS   +       +    A P       G    P   +P P             
Sbjct: 7   HHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGS 63

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 48.5 bits (115), Expect = 4e-06
 Identities = 12/65 (18%), Positives = 21/65 (32%)

Query: 326 PHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQ 385
               S + +  ++     L            P   PPP+P+    PK P    K   G +
Sbjct: 35  RRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTPPPKPKKTQKPKKPTQKKKSKPGKR 94

Query: 386 KPSPL 390
             + +
Sbjct: 95  MRNCM 99

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 11/50 (22%), Positives = 14/50 (28%)

Query: 340 EPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSP 389
           +P          P   PPP P   +       K  + P K M    K   
Sbjct: 54  QPKQKQKRAQKKPKKTPPPKPKKTQKPKKPTQKKKSKPGKRMRNCMKIEN 103

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 11/57 (19%), Positives = 18/57 (31%)

Query: 341 PPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHRQAR 397
           P          P P     P P  P PP   + P+   + +  +   +     +Q R
Sbjct: 5   PTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKR 61

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 10/59 (16%), Positives = 15/59 (25%)

Query: 340 EPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHRQARS 398
            P  +    P P PP PP     P         + A   +P    ++            
Sbjct: 15  RPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTPPPK 73

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 16/81 (19%), Positives = 20/81 (24%)

Query: 339 NEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHRQARS 398
                 A      P P PP PP   R        V A     +   QK        +   
Sbjct: 11  GRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTP 70

Query: 399 ISSEGNEVEGESGAAKTKLKP 419
                   + +    K K KP
Sbjct: 71  PPKPKKTQKPKKPTQKKKSKP 91

>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens} Length = 147

 Score = 46.2 bits (109), Expect = 5e-06
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 7/64 (10%)

Query: 346 APPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHRQARSISSEGNE 405
            PPPP PP           PR           P P+ G   PSPL P R+ R+ S+    
Sbjct: 5   PPPPPQPPTHQASVGLLDTPRS------RERSPSPLRGNVVPSPL-PTRRTRTFSATVRA 57

Query: 406 VEGE 409
            +G 
Sbjct: 58  SQGP 61

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 48.8 bits (116), Expect = 5e-06
 Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 9/71 (12%)

Query: 323 LTAPHSGSSMTEAQSSNEPPTLAAPPPP-PPPPGPPPPPPPPRPRPPAPPKVP------- 374
           +    +     + Q +  PP   APPP   PP G PP   PP+  PP     P       
Sbjct: 371 MKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQ 430

Query: 375 -APPPKPMTGV 384
            APP  P  GV
Sbjct: 431 GAPPAAPPQGV 441

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 10/77 (12%)

Query: 324 TAPHSGSSMTEAQSS--NEPPTLAAPPPP----PPPPGPPPPPPPPRPRPP--APPKVPA 375
            AP + ++  +   +   +     A  PP    PPP G PP   PP+  PP   PP+   
Sbjct: 362 AAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYP 421

Query: 376 PPPK--PMTGVQKPSPL 390
           PPP+  P  G    +P 
Sbjct: 422 PPPQGAPPQGAPPAAPP 438

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 48.2 bits (114), Expect = 8e-06
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 324 TAPHSGSSMTEAQSSNEPP-TLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMT 382
            +    S+ ++  ++  PP T+  P PPPPP      PP          ++   P  P  
Sbjct: 24  PSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGP-- 81

Query: 383 GVQKPSPLGPHRQAR 397
           G    +P   + +  
Sbjct: 82  GTTSLAPAVRYGRQP 96

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 1/70 (1%)

Query: 324 TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGP-PPPPPPPRPRPPAPPKVPAPPPKPMT 382
             P     +  + S     +       PP   P P PPPPP P    PP           
Sbjct: 14  LVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQR 73

Query: 383 GVQKPSPLGP 392
            ++ P+  G 
Sbjct: 74  ILRGPTGPGT 83

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 44.4 bits (104), Expect = 1e-04
 Identities = 20/94 (21%), Positives = 30/94 (31%)

Query: 326 PHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQ 385
                S +   ++++      PP   P P PPPPP P    PP      +   + + G  
Sbjct: 20  HMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPT 79

Query: 386 KPSPLGPHRQARSISSEGNEVEGESGAAKTKLKP 419
            P         R     G E    +  A  +  P
Sbjct: 80  GPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVP 113

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 44.0 bits (103), Expect = 2e-04
 Identities = 15/77 (19%), Positives = 19/77 (24%), Gaps = 2/77 (2%)

Query: 327 HSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQK 386
           H  SS    + S+     A+             PP   P P  PP        P      
Sbjct: 8   HHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNP--PDTV 65

Query: 387 PSPLGPHRQARSISSEG 403
                  R  R  +  G
Sbjct: 66  TGDSVLQRILRGPTGPG 82

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 43.6 bits (102), Expect = 3e-04
 Identities = 16/76 (21%), Positives = 19/76 (25%), Gaps = 3/76 (3%)

Query: 326 PHSGSSMTEAQSSNEPPTLAAPPPP--PPPPGPPPPPPPPRPRPPAPPKVPAPPP-KPMT 382
            HS   +        P                PP   P P P PP  P    PP      
Sbjct: 9   HHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGD 68

Query: 383 GVQKPSPLGPHRQARS 398
            V +    GP     +
Sbjct: 69  SVLQRILRGPTGPGTT 84

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 43.2 bits (101), Expect = 3e-04
 Identities = 12/64 (18%), Positives = 14/64 (21%), Gaps = 7/64 (10%)

Query: 336 QSSNEPPTLAAPPPPPPPPGPPPPPPPPRP-------RPPAPPKVPAPPPKPMTGVQKPS 388
            S +     +   P       P                PP     PAPPP P      P 
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 389 PLGP 392
               
Sbjct: 63  DTVT 66

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 47.5 bits (112), Expect = 8e-06
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 1/72 (1%)

Query: 332 MTEAQSSNEPPTLAAP-PPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPL 390
           + +  ++     +     P  P P PPP      P+ P  PK P P  K      K  P 
Sbjct: 42  IQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPG 101

Query: 391 GPHRQARSISSE 402
              R A  + ++
Sbjct: 102 KRQRMALKLEAD 113

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 44.4 bits (104), Expect = 8e-05
 Identities = 14/60 (23%), Positives = 17/60 (28%)

Query: 330 SSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSP 389
             +T A S+        P  P P P P      P+  P      P    K      KP  
Sbjct: 43  QQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGK 102

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 330 SSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSP 389
           S++   Q++        PPP      P  PP P +P+P    K      KP  G ++   
Sbjct: 50  SALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKP--GKRQRMA 107

Query: 390 LGPHRQA 396
           L      
Sbjct: 108 LKLEADR 114

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 46.9 bits (110), Expect = 3e-05
 Identities = 10/141 (7%), Positives = 25/141 (17%)

Query: 324 TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTG 383
                      + +  +                           PA  +           
Sbjct: 33  NTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAAS 92

Query: 384 VQKPSPLGPHRQARSISSEGNEVEGESGAAKTKLKPFFWDKVLASPDHAMVWHEISSGSF 443
             KP        A + S+E      +   AK +      +   A+  +            
Sbjct: 93  AAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPK 152

Query: 444 QFNEEMIESLFGYKPATKSRN 464
              + +      +    +   
Sbjct: 153 NTEKTLKPKEIKFNSWEELLK 173

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 46.1 bits (108), Expect = 5e-05
 Identities = 8/93 (8%), Positives = 17/93 (18%)

Query: 327 HSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQK 386
           H        Q         +        G          +            +   GV  
Sbjct: 11  HHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVAT 70

Query: 387 PSPLGPHRQARSISSEGNEVEGESGAAKTKLKP 419
            S         + ++E  E    +   +   + 
Sbjct: 71  ASETASPASNEAATTETAEAASAAKPEEKASEV 103

>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL, AG I/II protei surface adhesin, peptidoglycan-anchor; 2.30A {Streptococcus gordonii} Length = 349

 Score = 45.2 bits (106), Expect = 6e-05
 Identities = 19/80 (23%), Positives = 26/80 (32%), Gaps = 7/80 (8%)

Query: 306 FGSKTYNFTSWNLSFRFLTAPHSG-----SSMTEAQSSNEPPTLAAPPPPPPPPGPPPPP 360
           +G+     T   +SF   ++         +S   A      P   AP  P  P      P
Sbjct: 271 YGAIVGEITQSEISFNMASSKSGNIWFAFNSNINAIGVPTKPV--APTAPTQPMYETEKP 328

Query: 361 PPPRPRPPAPPKVPAPPPKP 380
             P P  P+    P PP K 
Sbjct: 329 LEPAPVAPSYENEPTPPVKT 348

>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2 Length = 137

 Score = 42.9 bits (100), Expect = 6e-05
 Identities = 16/43 (37%), Positives = 19/43 (44%)

Query: 340 EPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMT 382
              + +AP  P P P  P   PPP P P     VP P  +P T
Sbjct: 91  NQVSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEPTT 133

>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2 Length = 137

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 332 MTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPP 377
           + + Q S   P  A  P P  P   PPPPPPP P    PP    P 
Sbjct: 88  LVKNQVSPSAPA-APVPTPICPTTTPPPPPPPSPEAHVPPPYVEPT 132

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score = 44.5 bits (106), Expect = 1e-04
 Identities = 5/65 (7%), Positives = 11/65 (16%)

Query: 328 SGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKP 387
            G ++    +                          +          AP  +   G  + 
Sbjct: 69  VGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRR 128

Query: 388 SPLGP 392
               P
Sbjct: 129 VIAMP 133

>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris} Length = 108

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 21/74 (28%), Positives = 23/74 (31%)

Query: 306 FGSKTYNFTSWNLSFRFLTAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRP 365
            G+           F +     S    T A     PP  A   P PP  G  PPPP    
Sbjct: 34  HGACHKREAGKESCFCYFDCSKSPPGATPAPPGAAPPPAAGGSPSPPADGGSPPPPADGG 93

Query: 366 RPPAPPKVPAPPPK 379
            PP     P PP  
Sbjct: 94  SPPVDGGSPPPPST 107

>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris} Length = 108

 Score = 39.8 bits (92), Expect = 4e-04
 Identities = 18/55 (32%), Positives = 18/55 (32%), Gaps = 2/55 (3%)

Query: 336 QSSNEPPTLAAPPP--PPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPS 388
             S  PP     PP   PPP     P PP     P PP     PP        PS
Sbjct: 52  DCSKSPPGATPAPPGAAPPPAAGGSPSPPADGGSPPPPADGGSPPVDGGSPPPPS 106

>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris} Length = 108

 Score = 39.4 bits (91), Expect = 5e-04
 Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 345 AAPPPPPPPPGPPPPPPPPRPR-PPAPPKVPAPPPKPMTGVQKPSPLG 391
            +  PP   P PP   PPP     P+PP     PP P  G   P   G
Sbjct: 53  CSKSPPGATPAPPGAAPPPAAGGSPSPPADGGSPPPPADGGSPPVDGG 100

>1ei8_A Collagen-like peptide (Pro-HYP-Gly)4-PG-(Pro-HYP- Gly)5; triple helix, contractIle protein; 2.00A {Synthetic} SCOP: k.3.1.1 Length = 29

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 18/28 (64%), Positives = 18/28 (64%)

Query: 353 PPGPPPPPPPPRPRPPAPPKVPAPPPKP 380
           PPGPP PP PP P PP PP  P PP  P
Sbjct: 1   PPGPPGPPGPPGPGPPGPPGPPGPPGPP 28

>1ei8_A Collagen-like peptide (Pro-HYP-Gly)4-PG-(Pro-HYP- Gly)5; triple helix, contractIle protein; 2.00A {Synthetic} SCOP: k.3.1.1 Length = 29

 Score = 37.9 bits (88), Expect = 3e-04
 Identities = 18/28 (64%), Positives = 18/28 (64%)

Query: 350 PPPPPGPPPPPPPPRPRPPAPPKVPAPP 377
           PP PPGPP PP P  P PP PP  P PP
Sbjct: 1   PPGPPGPPGPPGPGPPGPPGPPGPPGPP 28

>1ei8_A Collagen-like peptide (Pro-HYP-Gly)4-PG-(Pro-HYP- Gly)5; triple helix, contractIle protein; 2.00A {Synthetic} SCOP: k.3.1.1 Length = 29

 Score = 37.2 bits (86), Expect = 4e-04
 Identities = 18/29 (62%), Positives = 18/29 (62%)

Query: 347 PPPPPPPPGPPPPPPPPRPRPPAPPKVPA 375
           PP PP PPGPP P PP  P PP PP  P 
Sbjct: 1   PPGPPGPPGPPGPGPPGPPGPPGPPGPPG 29

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 43.7 bits (101), Expect = 2e-04
 Identities = 12/52 (23%), Positives = 14/52 (26%)

Query: 341 PPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGP 392
               A   P      P PP  P  P  P         P P+    +  P  P
Sbjct: 436 GKIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPP 487

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 43.7 bits (101), Expect = 2e-04
 Identities = 14/46 (30%), Positives = 15/46 (32%), Gaps = 1/46 (2%)

Query: 340 EPPTLAAPPPPPPPPGPPPPPP-PPRPRPPAPPKVPAPPPKPMTGV 384
           E PT    P  P  P      P  P P  P   K P PP +     
Sbjct: 449 EKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLEHHH 494

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 43.0 bits (99), Expect = 4e-04
 Identities = 14/86 (16%), Positives = 23/86 (26%)

Query: 307 GSKTYNFTSWNLSFRFLTAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPR 366
           G   Y       +   +          +  +  + P +             P     +P 
Sbjct: 393 GPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPT 452

Query: 367 PPAPPKVPAPPPKPMTGVQKPSPLGP 392
           PP  P  P  P        KP+P+ P
Sbjct: 453 PPVKPTAPTKPTYETEKPLKPAPVAP 478

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 25/110 (22%), Positives = 30/110 (27%), Gaps = 1/110 (0%)

Query: 324 TAPHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTG 383
             P    S    Q            P      P  P           P   A  P     
Sbjct: 43  PPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAA 102

Query: 384 VQKPSPLGPHRQARSISSEGNE-VEGESGAAKTKLKPFFWDKVLASPDHA 432
            +  S   P     +  +  N  VEG SGA +  L P F  KV A  D+ 
Sbjct: 103 SEAASSSLPAVVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYT 152

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 43.8 bits (103), Expect = 3e-04
 Identities = 14/45 (31%), Positives = 15/45 (33%)

Query: 334 EAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPP 378
           E  +  EP    AP P P    P P    P P   A P   A   
Sbjct: 96  ELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEI 140

>1cag_A Collagen-like peptide; 1.85A {} SCOP: k.3.1.1 PDB: 1cgd_A Length = 30

 Score = 37.6 bits (87), Expect = 4e-04
 Identities = 20/31 (64%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 347 PPPPPPPPGPPPPPPPPRPRPPAPPKVPAPP 377
           PP PP PPGPP PP PP P  P PP  P PP
Sbjct: 1   PPGPPGPPGPPGPPAPPGP--PGPPGPPGPP 29

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Length = 388

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 5/53 (9%), Positives = 9/53 (16%)

Query: 345 AAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPSPLGPHRQAR 397
                              +    +  +  A      +G   P      R  R
Sbjct: 260 LDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIGR 312

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 41.2 bits (96), Expect = 6e-04
 Identities = 16/79 (20%), Positives = 22/79 (27%), Gaps = 9/79 (11%)

Query: 320 FRFLTAPHSGSSMTEAQSSNEPPTLAAP---PPPPPPPGPPPPPPPPRPRPPAPPKVPAP 376
           F   +   + S     +    PP  ++    P      G  P   P   R P P     P
Sbjct: 155 FEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGP 214

Query: 377 PPKPMTGVQKPSPLGPHRQ 395
           PP        P+    H  
Sbjct: 215 PP------PFPAGQTHHHH 227

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371

 Score = 42.2 bits (98), Expect = 6e-04
 Identities = 10/65 (15%), Positives = 16/65 (24%), Gaps = 1/65 (1%)

Query: 325 APHSGSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGV 384
           +    S++T       PPT+    P      P            +    P  P    +  
Sbjct: 1   SLTPLSAITVRSMEG-PPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSS 59

Query: 385 QKPSP 389
               P
Sbjct: 60  SFAVP 64

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 42.6 bits (100), Expect = 6e-04
 Identities = 10/45 (22%), Positives = 13/45 (28%)

Query: 334 EAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPP 378
           E +    P   ++    P      P  P   P P      PA P 
Sbjct: 96  EDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPV 140

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 42.2 bits (99), Expect = 8e-04
 Identities = 11/50 (22%), Positives = 16/50 (32%)

Query: 333 TEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMT 382
            E + +    + A   P   P  P  P   P P P +          P+T
Sbjct: 97  DEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVT 146

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 41.5 bits (96), Expect = 8e-04
 Identities = 8/75 (10%), Positives = 14/75 (18%)

Query: 329 GSSMTEAQSSNEPPTLAAPPPPPPPPGPPPPPPPPRPRPPAPPKVPAPPPKPMTGVQKPS 388
              ++           A     P    P   P               P   P    ++  
Sbjct: 230 NWDLSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSE 289

Query: 389 PLGPHRQARSISSEG 403
               +  +   S E 
Sbjct: 290 TESVNPVSTPASVEY 304

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	876
2j1d_G	483	DAAM1, disheveled-associated activator of morphoge	100.0
3obv_E	457	Protein diaphanous homolog 1; autoinhibition, acti	100.0
4eah_A	402	Formin-like protein 3, actin, alpha skeletal muscl	100.0
1ux5_A	411	BNI1 protein; structural protein, FH2 actin cytosk	100.0
1v9d_A	340	Diaphanous protein homolog 1; helix bundle, protei	100.0
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	96.14

>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A

Probab=100.00  E-value=5.4e-69  Score=620.53  Aligned_cols=376  Identities=26%  Similarity=0.391  Sum_probs=330.1

Q ss_pred             cccccccCcccccccccccCCCCcccccccccCcc--ccchHHHHhhhccCCCCCc---------cccCCCCCCCCCccc
Q 039012          409 ESGAAKTKLKPFFWDKVLASPDHAMVWHEISSGSF--QFNEEMIESLFGYKPATKS---------RNECGKSNSVSSESS  477 (876)
Q Consensus       409 ~s~~pk~KLK~l~W~KI~~~~~~~TIW~~i~~~s~--~lD~e~lE~lF~~k~~~~~---------k~~~kk~~s~s~~~~  477 (876)
                      ....|+.+||++||++|+.+.+++|||+++++..+  .+|+++||++|+.+.....         +..+..++.....++
T Consensus         7 ~~~~P~~klK~l~W~ki~~~~~~~TiW~~~~~~~~~~~ld~~~lE~lF~~~~~~~~~~~~~~~~~k~~~s~~~~~~~~kk   86 (483)
T 2j1d_G            7 SIPQPTNALKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEADAIDDTLSSKLK   86 (483)
T ss_dssp             CCCCCSSCBCCCCCCCCCGGGCSSSGGGGCCGGGHHHHSCHHHHHHHTBSBC----------------------------
T ss_pred             CCCCCCCCCCCcCceECCcccccCCccCcCCchhhccccCHHHHHHHHhhhccccccccccccccccccccccccccccC
Confidence            45568899999999999988889999999988753  5899999999998654221         000000110122346


Q ss_pred             ccccccCChhHHHHHHHHHhhcCCCHHHHHHHHhhCCC---CCHHHHHHHHhcCCChHHHHHhhcCCCCCCCCChHHHHH
Q 039012          478 AQYIQIIDTRKAQNLSIILRALNLTSEEVVDALEEGNE---LPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAERFL  554 (876)
Q Consensus       478 ~~~vslLD~KraqNi~I~L~~lk~s~eeI~~aI~~~d~---L~~e~L~~Llk~~Pt~eE~~~L~~~~gd~~~L~~aEqFl  554 (876)
                      ++.|+|||+||||||+|+|++|++++++|++||+++|.   |+.|.|+.|++++||.||+..|+.|.+|.+.|+++|||+
T Consensus        87 ~~~v~lLD~kRaqNi~I~L~~lk~~~~ei~~aIl~~D~~~~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~~~L~~aEqFl  166 (483)
T 2j1d_G           87 VKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRFL  166 (483)
T ss_dssp             -CCBCCSCHHHHHHHHHHHHHHCCCHHHHHHHHHTTSTTCCCCHHHHHHHHHSCCCHHHHHHHHTTTTCGGGBCHHHHHH
T ss_pred             CCcceeCCHHHHHHHHHHHhcCCCCHHHHHHHHHccCccccCCHHHHHHHHHhCCCHHHHHHHHHhccChhhcCHHHHHH
Confidence            78899999999999999999999999999999998764   999999999999999999999999999999999999999


Q ss_pred             HHhcCcccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccccCCCCCCCcccceeccch
Q 039012          555 KTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTL  634 (876)
Q Consensus       555 ~~l~~Ip~~~~RL~~llf~~~f~~~~~~l~~~l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN~gt~rG~A~GFkL~SL  634 (876)
                      ++|+.||+|..||+||+|+.+|++.+.+|.+.|..|..||++|++|..|+.||++||++|||||+| .||+|+||+|++|
T Consensus       167 ~~l~~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~IL~~GN~mN~g-~rg~A~GFkL~sL  245 (483)
T 2j1d_G          167 FEMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKG-QRGNAYGFKISSL  245 (483)
T ss_dssp             HHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSCS-SSCCCSCCCGGGG
T ss_pred             HHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhccC-CCCCceeeehHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999 7999999999999


Q ss_pred             hhhhcccCC-CCCccHHHHHHHHHHHhhhhhhhhhhcccCCccccccccchhccCCChhhHHHHhhhhhhhhccchhhHH
Q 039012          635 LKLADVKGT-DGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELE  713 (876)
Q Consensus       635 ~KL~d~Ks~-D~k~TLLhflv~~Iir~e~~~a~~~~~e~~s~~~~~~k~~dll~~~~~~~~e~y~~lgL~~V~~Ls~EL~  713 (876)
                      .||.|||++ |+++|||||||+.|.++.+                                         .+.+|.+||.
T Consensus       246 ~KL~d~Ks~~d~k~TLLhylv~~v~~~~p-----------------------------------------~l~~f~~eL~  284 (483)
T 2j1d_G          246 NKIADTKSSIDKNITLLHYLITIVENKYP-----------------------------------------SVLNLNEELR  284 (483)
T ss_dssp             GGGGGSBCSSCTTCBHHHHHHHHHHHHCG-----------------------------------------GGGGHHHHTT
T ss_pred             HhhhhcccCCCCCccHHHHHHHHHHHhCc-----------------------------------------hhhchHHHHh
Confidence            999999995 9999999999987643211                                         1457889999


Q ss_pred             HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039012          714 DVKKAAVIDADSVTATVSKLSTSLTKTKAFLDTEMKN-KDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADY  792 (876)
Q Consensus       714 ~V~kAA~vd~d~L~~~v~~L~~~L~~~k~~l~~~~k~-~~edd~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~~Y  792 (876)
                      +|.+|++||++.|..++.+|.+++..++..++..-.. .+.++.|..+|..|+..|+.++..|...++++.+.|++++.|
T Consensus       285 ~v~~Askv~~~~l~~~~~~L~~~l~~v~~~l~~~~~~~~~~~d~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~y  364 (483)
T 2j1d_G          285 DIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQPPQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKH  364 (483)
T ss_dssp             THHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999887654221 245688999999999999999999999999999999999999


Q ss_pred             ccCCCcccchhhhhHHHHHHHHHHHHHHHHHHHh
Q 039012          793 FHGNSGKDEGLRLFTIVRDFLIMLDKSCKQVKIT  826 (876)
Q Consensus       793 Fged~~k~e~~~fF~iv~dFl~~f~ka~kEv~~~  826 (876)
                      |||++.+..+.+||++|.+|+.+|++|++||.+.
T Consensus       365 FGEd~~~~~~~~fF~~~~~F~~~f~~A~~en~~~  398 (483)
T 2j1d_G          365 FGEEAGKIQPDEFFGIFDQFLQAVSEAKQENENM  398 (483)
T ss_dssp             TTCCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999899999999999999999999999763

>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D

Probab=100.00  E-value=3.4e-68  Score=608.53  Aligned_cols=378  Identities=24%  Similarity=0.362  Sum_probs=331.0

Q ss_pred             ccccccCcccccccccccCCC-CcccccccccCccc--cchHHHHhhhccCCCCCc-c-c-cCCCCCCCCCccccccccc
Q 039012          410 SGAAKTKLKPFFWDKVLASPD-HAMVWHEISSGSFQ--FNEEMIESLFGYKPATKS-R-N-ECGKSNSVSSESSAQYIQI  483 (876)
Q Consensus       410 s~~pk~KLK~l~W~KI~~~~~-~~TIW~~i~~~s~~--lD~e~lE~lF~~k~~~~~-k-~-~~kk~~s~s~~~~~~~vsl  483 (876)
                      ...|..+||++||++|..+.+ ++|||.++++..+.  -+++.||.+|+.+..... + . ...........++++.|+|
T Consensus         3 ~~~P~~~mK~l~W~ki~~~~~~~~t~W~~~~e~~~~~~~~f~~Le~~F~~~~~~~~~~k~~~~~~~~~~~~~kk~~~v~l   82 (457)
T 3obv_E            3 VYKPEVQLRRPNWSKFVAEDLSQDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQEGGEEKKSVQKKKVKELKV   82 (457)
T ss_dssp             CCCCSSCBCCCCCCEECTTTTCSSSSGGGCCGGGGCCTTHHHHHHHHTBCC-----------------------CCCCSS
T ss_pred             CCCCCCCCcCCCceeCCccccCCCceeeeCccccccChhHHHHHHHHhcccccccccccccccccccccccccCCceeEe
Confidence            357889999999999987665 69999999887653  246889999998754211 1 0 0000000123456788999


Q ss_pred             CChhHHHHHHHHHhhcCCCHHHHHHHHhhCC--CCCHHHHHHHHhcCCChHHHHHhhcCCCCCCCCChHHHHHHHhcCcc
Q 039012          484 IDTRKAQNLSIILRALNLTSEEVVDALEEGN--ELPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAERFLKTLVDIP  561 (876)
Q Consensus       484 LD~KraqNi~I~L~~lk~s~eeI~~aI~~~d--~L~~e~L~~Llk~~Pt~eE~~~L~~~~gd~~~L~~aEqFl~~l~~Ip  561 (876)
                      ||+||+|||+|+|++|++++++|++||+++|  .|+.|.|+.|++++||.||+..|+.|.+|...|+++|||++.|+.||
T Consensus        83 LD~kraqNi~I~L~~lk~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~d~~~L~~~EqF~~~l~~Ip  162 (457)
T 3obv_E           83 LDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDDLAESEQFGVVMGTVP  162 (457)
T ss_dssp             SCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHCCCHHHHHHHHTTTTSGGGSCHHHHHHHHHTSST
T ss_pred             cCHHHHhHHHHHHhccCCCHHHHHHHHHhCCcccCCHHHHHHHHHhCCCHHHHHHHHHhccChhhcCHHHHHHHHHHccc
Confidence            9999999999999999999999999999987  49999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccccCCCCCCCcccceeccchhhhhccc
Q 039012          562 FAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVK  641 (876)
Q Consensus       562 ~~~~RL~~llf~~~f~~~~~~l~~~l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN~gt~rG~A~GFkL~SL~KL~d~K  641 (876)
                      +|..||+||+|+.+|++.+.+|.+.|..|..||++|++|..|+.||++||++|||||+|+.+|+|+||+|++|.||.|||
T Consensus       163 ~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~~GN~mN~g~~~g~A~GFkL~sL~KL~d~K  242 (457)
T 3obv_E          163 RLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTK  242 (457)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTTSTTCSCSCBCGGGHHHHTTCB
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhhhccCCcCCCeeeEehHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccHHHHHHHHHHHhhhhhhhhhhcccCCccccccccchhccCCChhhHHHHhhhhhhhhccchhhHHHHHHHhhc
Q 039012          642 GTDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELEDVKKAAVI  721 (876)
Q Consensus       642 s~D~k~TLLhflv~~Iir~e~~~a~~~~~e~~s~~~~~~k~~dll~~~~~~~~e~y~~lgL~~V~~Ls~EL~~V~kAA~v  721 (876)
                      ++|+++||||||++.+.++                                    |.     .+.+|.+||.+|.+|++|
T Consensus       243 s~d~k~TLLh~l~~~v~~~------------------------------------~p-----~l~~f~~eL~~v~~Aakv  281 (457)
T 3obv_E          243 SADQKMTLLHFLAELCEND------------------------------------HP-----EVLKFPDELAHVEKASRV  281 (457)
T ss_dssp             CSSTTCBHHHHHHHHHHHH------------------------------------CG-----GGGGHHHHCTTHHHHTTC
T ss_pred             cCCCCccHHHHHHHHHHHc------------------------------------Cc-----cccCChhhhhhHHhhccC
Confidence            9999999999999865321                                    11     256788999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccc
Q 039012          722 DADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDE  801 (876)
Q Consensus       722 d~d~L~~~v~~L~~~L~~~k~~l~~~~k~~~edd~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~~YFged~~k~e  801 (876)
                      |++.|..++.+|.+++..++..++......+.++.|..+|..|+..|+.++..|...++.+.+.|+++++||||++.+..
T Consensus       282 s~~~l~~dl~~L~~~l~~v~~~l~~~~~~~~~~d~f~~~m~~Fl~~A~~~~~~L~~~~~~~~~~~~~l~~yFgedp~~~~  361 (457)
T 3obv_E          282 SAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLS  361 (457)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTSC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999998887654333456789999999999999999999999999999999999999999999989


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 039012          802 GLRLFTIVRDFLIMLDKSCKQVKITTK  828 (876)
Q Consensus       802 ~~~fF~iv~dFl~~f~ka~kEv~~~~~  828 (876)
                      +++||++|.+|+.+|++|++||.++++
T Consensus       362 ~~eFF~~~~~F~~~fkkA~~eN~~r~e  388 (457)
T 3obv_E          362 VEEFFMDLHNFRNMFLQAVKENQKRRE  388 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999986654

>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus}

Probab=100.00  E-value=1.3e-67  Score=595.70  Aligned_cols=368  Identities=23%  Similarity=0.388  Sum_probs=322.2

Q ss_pred             ccccccccCcccccccccccCCCCcccccccccCcc--ccchHHHHhhhccCCCCCccc-cCCCCCCCCCcccccccccC
Q 039012          408 GESGAAKTKLKPFFWDKVLASPDHAMVWHEISSGSF--QFNEEMIESLFGYKPATKSRN-ECGKSNSVSSESSAQYIQII  484 (876)
Q Consensus       408 ~~s~~pk~KLK~l~W~KI~~~~~~~TIW~~i~~~s~--~lD~e~lE~lF~~k~~~~~k~-~~kk~~s~s~~~~~~~vslL  484 (876)
                      .....|+.+||++||++|..+++.+|||+++++..+  .+|+++||++|+.+....... ...+.  ....+++++|+||
T Consensus        10 Kk~~~~k~kmk~l~W~kl~~~~i~~Tiw~~~~~~~~~~~ld~~~~E~lF~~k~~~~~~~~~~~k~--k~~~k~~~~v~lL   87 (402)
T 4eah_A           10 KKPIKTKFRLPVFNWTALKPNQINGTVFSELDDEKILEDLDLDRFEELFKTKAQGPALDLICSKN--KTAQKAASKVTLL   87 (402)
T ss_dssp             CCCCCCSSCCCCCCCCEECHHHHTTSTTSSCCTTSCSSTTTHHHHHHHSCCCC----------------------CBCSS
T ss_pred             CCCCCCCCCCCCcCceeCChHhccCccccCCchhhhccccCHHHHHHHHhhcccCCccccchhcc--cccccCCCceeeC
Confidence            345578899999999999988899999999988776  689999999999875321100 00010  1123456789999


Q ss_pred             ChhHHHHHHHHHhhcCCCHHHHHHHHhhCC--CCCHHHHHHHHhcCCChHHHHHhhcCCCC---CCCCChHHHHHHHhcC
Q 039012          485 DTRKAQNLSIILRALNLTSEEVVDALEEGN--ELPLELLQTLLKMAPTTDEELKLRLFPGD---ISQLGPAERFLKTLVD  559 (876)
Q Consensus       485 D~KraqNi~I~L~~lk~s~eeI~~aI~~~d--~L~~e~L~~Llk~~Pt~eE~~~L~~~~gd---~~~L~~aEqFl~~l~~  559 (876)
                      |+||+|||+|+|++|++++++|++||+++|  .|+.|.|+.|++++||.||+..|+.|.+|   .+.|+++|||+++|+.
T Consensus        88 d~kra~Ni~I~L~~l~~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~~~L~~~EqF~~~l~~  167 (402)
T 4eah_A           88 EANRAKNLAITLRKAGRSAEEICRAIHTFDLQTLPVDFVECLMRFLPTEAEVKLLRQYERERQPLEELAAEDRFMLLFSK  167 (402)
T ss_dssp             CHHHHHHHHHHHHHHCCCHHHHHHHHHTTSCSCCCHHHHHHHHHTCCCHHHHHHHHHHHHSSCCTTTBCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcccCCHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhccHHHHHHHHHHc
Confidence            999999999999999999999999999887  59999999999999999999999999765   4789999999999999


Q ss_pred             cccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccccCCCCCCCcccceeccchhhhhc
Q 039012          560 IPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLAD  639 (876)
Q Consensus       560 Ip~~~~RL~~llf~~~f~~~~~~l~~~l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN~gt~rG~A~GFkL~SL~KL~d  639 (876)
                      ||+|..||+||+|+.+|++.+.+|.+.+..|..||++|++|+.|++||++||++|||||+| .||+|+||+|++|.||.|
T Consensus       168 ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~v~~A~~~l~~S~~l~~lL~~iL~~GN~mN~g-~rg~A~GFkL~sL~KL~d  246 (402)
T 4eah_A          168 VERLTQRMAGMAFLGNFQDNLQMLTPQLNAIIAASASVKSSQKLKQMLEIILALGNYMNSS-KRGAVYGFKLQSLDLLLD  246 (402)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCS-SSCCCSCBCGGGGGSSSS
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhhccCC-CCCccceeeHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999 699999999999999999


Q ss_pred             ccCCCCCccHHHHHHHHHHHhhhhhhhhhhcccCCccccccccchhccCCChhhHHHHhhhhhhhhccchhhHHHHHHHh
Q 039012          640 VKGTDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELEDVKKAA  719 (876)
Q Consensus       640 ~Ks~D~k~TLLhflv~~Iir~e~~~a~~~~~e~~s~~~~~~k~~dll~~~~~~~~e~y~~lgL~~V~~Ls~EL~~V~kAA  719 (876)
                      ||++|+++|||||||+.|.++.                                    .     .+.+|.+||.+|.+|+
T Consensus       247 ~Ks~d~k~TLLh~l~~~~~~~~------------------------------------p-----~l~~f~~eL~~v~~Aa  285 (402)
T 4eah_A          247 TKSTDRKMTLLHFIALTVKEKY------------------------------------P-----ELANFWQELHFVEKAA  285 (402)
T ss_dssp             SBCTTSSSBHHHHHHHHHHHHC------------------------------------G-----GGGTCSTTCCSHHHHH
T ss_pred             ccCCCCCccHHHHHHHHHHhhh------------------------------------H-----HHHHHhhhhhhHHHHh
Confidence            9999999999999998664321                                    1     2457889999999999


Q ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcc
Q 039012          720 VIDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGK  799 (876)
Q Consensus       720 ~vd~d~L~~~v~~L~~~L~~~k~~l~~~~k~~~edd~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~~YFged~~k  799 (876)
                      +||++.|..++.+|.+++..++..+..       .+  ..+|..|+..|+.++..|...++++++.|++++.||||++.+
T Consensus       286 ~v~~~~l~~d~~~L~~~l~~~~~e~~~-------~d--~~~l~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFgedpk~  356 (402)
T 4eah_A          286 AVSLENVLLDVKELGRGMELIRRECSI-------HD--NSVLRNFLSTNEGKLDKLQRDAKTAEEAYNAVVRYFGESPKT  356 (402)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHHT-------TC--CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTT
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHhcc-------cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            999999999999999999998765432       11  247999999999999999999999999999999999999998


Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 039012          800 DEGLRLFTIVRDFLIMLDKSCKQVKITTK  828 (876)
Q Consensus       800 ~e~~~fF~iv~dFl~~f~ka~kEv~~~~~  828 (876)
                      ..+.+||++|.+|+.+|++|++||.++++
T Consensus       357 ~~~~~fF~~~~~F~~~fk~A~~en~~r~~  385 (402)
T 4eah_A          357 TPPSVFFPVFVRFIRSYKEAEQENEARKK  385 (402)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999988766

>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A

Probab=100.00  E-value=4.3e-65  Score=577.84  Aligned_cols=366  Identities=19%  Similarity=0.271  Sum_probs=317.3

Q ss_pred             ccccccCcccccccccccCCCCcccccccccCccc--c----chHHHHhhhccCCCCCccccCCCCCCCCCccccccccc
Q 039012          410 SGAAKTKLKPFFWDKVLASPDHAMVWHEISSGSFQ--F----NEEMIESLFGYKPATKSRNECGKSNSVSSESSAQYIQI  483 (876)
Q Consensus       410 s~~pk~KLK~l~W~KI~~~~~~~TIW~~i~~~s~~--l----D~e~lE~lF~~k~~~~~k~~~kk~~s~s~~~~~~~vsl  483 (876)
                      ...|+.|||++||++|.+  .++|||+++++..+.  +    |+++||++|+.+...+.  ..      ...++++.|+|
T Consensus         2 ~p~P~~klK~l~W~ki~~--~~~tiW~~~~~~~~~~~l~~~~d~~~lE~lF~~~~~~~~--~~------~k~~~~~~v~l   71 (411)
T 1ux5_A            2 YPRPHKKLKQLHWEKLDC--TDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSL--AS------KRKEDLQKITF   71 (411)
T ss_dssp             CCCCSSCBCCCCCCCCSS--CCSSSCCSSHHHHHHHHHHHTTHHHHHHHHTBSSCCHHH--HH------HHHHTTTSBCC
T ss_pred             CCCCCCCCCCcCcccCCC--CCCCcCcCCccHHHHHhhhhhchHHHHHHHhcccccccc--cc------cccCCCCeeee
Confidence            456889999999999986  899999999876542  3    78999999998864321  11      11234568999


Q ss_pred             CChhHHHHHHHHHhhc-CCCHHHHHHHHhhCCC--CCH-HHHHH------------HH-hcCCChHHHH------HhhcC
Q 039012          484 IDTRKAQNLSIILRAL-NLTSEEVVDALEEGNE--LPL-ELLQT------------LL-KMAPTTDEEL------KLRLF  540 (876)
Q Consensus       484 LD~KraqNi~I~L~~l-k~s~eeI~~aI~~~d~--L~~-e~L~~------------Ll-k~~Pt~eE~~------~L~~~  540 (876)
                      ||+||+|||+|+|++| ++++++|++||+++|.  |+. ++++.            |+ +++||.+|++      .++.|
T Consensus        72 Ld~kraqNi~I~L~~~~~~~~~ei~~ai~~~D~~~L~~~~lie~L~~~~~~ei~~~L~~~~~P~~~e~e~l~~~~~~~~~  151 (411)
T 1ux5_A           72 LSRDISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPP  151 (411)
T ss_dssp             SCHHHHHHHHHHTGGGTTSCHHHHHHHHHTTTHHHHTCHHHHHHTTCHHHHCCCHHHHHHTGGGCCCCTTCCCGGGCCCC
T ss_pred             cChHHHHHHHHHHHhcCCCCHHHHHHHHHhcChhhcCHHHHHHHhchhHHHhhHHHHHHhcCCCchhHHHHHHHHHhhhc
Confidence            9999999999999999 8999999999999884  663 23333            45 6999988865      34467


Q ss_pred             CCCCCCCChHHHHHHHhc-Cc-ccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccccC
Q 039012          541 PGDISQLGPAERFLKTLV-DI-PFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMN  618 (876)
Q Consensus       541 ~gd~~~L~~aEqFl~~l~-~I-p~~~~RL~~llf~~~f~~~~~~l~~~l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN  618 (876)
                      .||.+.|+++|||+++|+ .| +++..||+||+|+.+|++.+.+|.+.+..|..||++|++|+.|++||++||++|||||
T Consensus       152 ~~d~~~L~~~eqf~~~l~~~i~~~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~iL~~GN~mN  231 (411)
T 1ux5_A          152 EKDPNDLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMN  231 (411)
T ss_dssp             SSCSTTBCHHHHHHHHTTTTTTTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred             cCChhhCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhCccc
Confidence            799999999999999986 79 5689999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccceeccchhhhhcccCCCCCccHHHHHHHHHHHhhhhhhhhhhcccCCccccccccchhccCCChhhHHHHh
Q 039012          619 DGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYS  698 (876)
Q Consensus       619 ~gt~rG~A~GFkL~SL~KL~d~Ks~D~k~TLLhflv~~Iir~e~~~a~~~~~e~~s~~~~~~k~~dll~~~~~~~~e~y~  698 (876)
                      +|+.  +|+||+|++|.||.|||++|+++|||||||+.|.++                                    |.
T Consensus       232 ~g~~--~A~GFkL~sL~KL~d~Ks~d~k~TLLh~l~~~v~~~------------------------------------~p  273 (411)
T 1ux5_A          232 DTSK--QAQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLN------------------------------------YP  273 (411)
T ss_dssp             CGGG--CCSCCCGGGGGGSSSCBCTTSCSBHHHHHHHHHHHH------------------------------------CG
T ss_pred             CCCC--CeeEeehhHHHHHHHhhCCCCCccHHHHHHHHHHHh------------------------------------Cc
Confidence            9985  799999999999999999999999999999855321                                    11


Q ss_pred             hhhhhhhccchhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHh-hh---cccccchhhHHHHHHHHHHHHHHHH
Q 039012          699 ILGLQVVSGLSTELEDVKKAAVIDADSVTATVSKLSTSLTKTKAFLDTE-MK---NKDEKTEFYNVVTKFLERAETDIAW  774 (876)
Q Consensus       699 ~lgL~~V~~Ls~EL~~V~kAA~vd~d~L~~~v~~L~~~L~~~k~~l~~~-~k---~~~edd~F~e~m~~Fle~Ae~ei~~  774 (876)
                           .+.+|.+||.+|.+|++||++.|..++.+|.+++.+++..++.. +.   ..++++.|...|..|++.|+.++..
T Consensus       274 -----~l~~f~~eL~~v~~Aakv~~~~l~~d~~~L~~~l~~v~~~l~~~~~s~~~~~~~~d~f~~~~~~fl~~a~~~~~~  348 (411)
T 1ux5_A          274 -----SFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDL  348 (411)
T ss_dssp             -----GGGGHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTTCTTSSCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             -----ccccccchhhhHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCcccHHHHHHHHHHHHHHHHHHH
Confidence                 25678899999999999999999999999999999999887642 11   1256789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCc-ccchhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 039012          775 LLEEEKRIMALVKSTADYFHGNSG-KDEGLRLFTIVRDFLIMLDKSCKQVKITTK  828 (876)
Q Consensus       775 L~e~~k~~~~l~k~~~~YFged~~-k~e~~~fF~iv~dFl~~f~ka~kEv~~~~~  828 (876)
                      |.+.++++.+.|++++.||||++. +..+.+||++|.+|+.+|++|++||.++++
T Consensus       349 l~~~~~~~~~~~~~l~~yfged~~~~~~~~~fF~~~~~F~~~f~~a~~en~~~~e  403 (411)
T 1ux5_A          349 LEDEVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNLAAEE  403 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999987 457899999999999999999999998877

>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1

Probab=100.00  E-value=6.2e-63  Score=547.19  Aligned_cols=312  Identities=26%  Similarity=0.384  Sum_probs=267.4

Q ss_pred             ccccccccCChhHHHHHHHHHhhcCCCHHHHHHHHhhCC--CCCHHHHHHHHhcCCChHHHHHhhcCCCCCCCCChHHHH
Q 039012          476 SSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDALEEGN--ELPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAERF  553 (876)
Q Consensus       476 ~~~~~vslLD~KraqNi~I~L~~lk~s~eeI~~aI~~~d--~L~~e~L~~Llk~~Pt~eE~~~L~~~~gd~~~L~~aEqF  553 (876)
                      ++++.|+|||+||+|||+|+|++|++++++|++||+++|  .|+.|.|+.|++++||+||+..|+.|.+|.+.|+++|||
T Consensus         4 kk~~~i~vLD~kraqNi~I~L~~~k~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~EqF   83 (340)
T 1v9d_A            4 KKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDDLAESEQF   83 (340)
T ss_dssp             --CCCCSSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHSCCHHHHHHHHTCGGGGGGSCHHHHH
T ss_pred             CCCCeeeecCHHHHhHHHHHHhhcCCCHHHHHHHHHhCCcccCCHHHHHHHHccCCCHHHHHHHHHhhCChhhcCHHHHH
Confidence            356789999999999999999999999999999999987  499999999999999999999999999999999999999


Q ss_pred             HHHhcCcccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccccCCCCCCCcccceeccc
Q 039012          554 LKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDT  633 (876)
Q Consensus       554 l~~l~~Ip~~~~RL~~llf~~~f~~~~~~l~~~l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN~gt~rG~A~GFkL~S  633 (876)
                      ++.|+.||++..||+||+|+.+|++.+.+|.+.+..|..||++|++|+.|++||++||++|||||+|+++|+|+||+|++
T Consensus        84 ~~~l~~ip~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~iL~~GN~mN~g~~~g~A~GFkL~s  163 (340)
T 1v9d_A           84 GVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISF  163 (340)
T ss_dssp             HHHHHTSTTHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTCHHHHHCC------------------------CC
T ss_pred             HHHHHCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHcCcCCCCCCCCceeeeehHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcccCCCCCccHHHHHHHHHHHhhhhhhhhhhcccCCccccccccchhccCCChhhHHHHhhhhhhhhccchhhHH
Q 039012          634 LLKLADVKGTDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELE  713 (876)
Q Consensus       634 L~KL~d~Ks~D~k~TLLhflv~~Iir~e~~~a~~~~~e~~s~~~~~~k~~dll~~~~~~~~e~y~~lgL~~V~~Ls~EL~  713 (876)
                      |.||.|||++|+++|||||||+.+.++.                     +                    .+.+|.+||.
T Consensus       164 L~KL~d~Ks~d~k~TLLh~lv~~~~~~~---------------------p--------------------~l~~f~~eL~  202 (340)
T 1v9d_A          164 LCKLRDTKSADQKMTLLHFLAELCENDH---------------------P--------------------EVLKFPDELA  202 (340)
T ss_dssp             HHHHHHSBCSSTTSBHHHHHHHHHHHSC---------------------C--------------------TTSSGGGGCT
T ss_pred             HHhhhhhcCCCCCccHHHHHHHHHHHhC---------------------c--------------------hhccchhHHH
Confidence            9999999999999999999998653211                     1                    1567889999


Q ss_pred             HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039012          714 DVKKAAVIDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYF  793 (876)
Q Consensus       714 ~V~kAA~vd~d~L~~~v~~L~~~L~~~k~~l~~~~k~~~edd~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~~YF  793 (876)
                      +|.+|++||++.|..++..|.+++..++..++...+..++++.|.++|..|+..|+.++..|...++++.+.|++++.||
T Consensus       203 ~v~~Askvs~~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~d~f~~~m~~Fl~~a~~~~~~l~~~~~~~~~~~~~l~~yf  282 (340)
T 1v9d_A          203 HVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYF  282 (340)
T ss_dssp             THHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999887776443445667899999999999999999999999999999999999999


Q ss_pred             cCCCcccchhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 039012          794 HGNSGKDEGLRLFTIVRDFLIMLDKSCKQVKITTK  828 (876)
Q Consensus       794 ged~~k~e~~~fF~iv~dFl~~f~ka~kEv~~~~~  828 (876)
                      ||++.+..+.+||++|++|+.+|++||+||.++++
T Consensus       283 ged~~~~~~~~fF~~~~~F~~~f~~a~~en~~r~e  317 (340)
T 1v9d_A          283 VFDPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRE  317 (340)
T ss_dssp             TCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999989999999999999999999999988755

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=96.14  E-value=0.00088  Score=74.77  Aligned_cols=15  Identities=13%  Similarity=-0.161  Sum_probs=10.8

Q ss_pred             hhHHHHHHHhcCCch
Q 039012           79 TTRRISEAINDLPPQ   93 (876)
Q Consensus        79 ~~~~~~~~~~~~~~~   93 (876)
                      ....++..+.+..|.
T Consensus       127 ~~isidRy~aI~~P~  141 (448)
T 2z73_A          127 AMISIDRYNVIGRPM  141 (448)
T ss_dssp             HHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHHhccccc
Confidence            456778888887774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	876
d1v9da_	332	a.207.1.1 (A:) Diaphanous protein homolog 1, dia1	2e-77
d1ux5a_	411	a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces	3e-70
d1jvra_	137	a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell	6e-06
d1jvra_	137	a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell	1e-05
d1jvra_	137	a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell	8e-05
d1jvra_	137	a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell	0.003
d2gqba1	130	a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {	0.004

>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 332

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Diaphanous protein homolog 1, dia1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  252 bits (646), Expect = 2e-77
 Identities = 82/348 (23%), Positives = 145/348 (41%), Gaps = 43/348 (12%)

Query: 479 QYIQIIDTRKAQNLSIILRALNLTSEEVVDALEEGNE--LPLELLQTLLKMAPTTDEELK 536
           + ++++D++ AQNLSI L +  +  +E+ + + E NE  L   ++Q L+K  P  ++   
Sbjct: 2   KELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKM 61

Query: 537 LRLFPGDISQLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDK 596
           L     +   L  +E+F   +  +P    R+ +++F     E + +IK    ++  AC++
Sbjct: 62  LSELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEE 121

Query: 597 LRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQE 656
           LR S  F  LLE  L  GN MN G+   GA  F +  L KL D K  D K TLLHF+ + 
Sbjct: 122 LRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAEL 181

Query: 657 IIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELEDVK 716
                                                           V     EL  V+
Sbjct: 182 CENDHPE-----------------------------------------VLKFPDELAHVE 200

Query: 717 KAAVIDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLL 776
           KA+ + A+++  ++ ++   +   +  +       DEK +F   +T F++ A+     L 
Sbjct: 201 KASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLR 260

Query: 777 EEEKRIMALVKSTADYFHGNSGKDEGLRLFTIVRDFLIMLDKSCKQVK 824
                +  L K   DYF  +  K      F  + +F  M  ++ K+ +
Sbjct: 261 MMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQ 308

>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 411

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Bni1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  236 bits (602), Expect = 3e-70
 Identities = 73/447 (16%), Positives = 140/447 (31%), Gaps = 89/447 (19%)

Query: 414 KTKLKPFFWDKVLASPDHAMVWHEISSGSF------QFNEEMIESLFGYKPATKSRNECG 467
             KLK   W+K+  + +   +W    +  F      +     +E  F  +          
Sbjct: 6   HKKLKQLHWEKLDCTDN--SIWGTGKAEKFADDLYEKGVLADLEKAFAAREI-------- 55

Query: 468 KSNSVSSESSAQYIQIIDTRKAQNLSIILRAL-NLTSEEVVDALEEGNE----------- 515
           KS +   +   Q I  +    +Q   I L    +L+  ++V  +   +            
Sbjct: 56  KSLASKRKEDLQKITFLSRDISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEF 115

Query: 516 -----LPLELLQTLLKMAPTTDEELKLRLF------PGDISQLGPAERFLKTLV--DIPF 562
                +    +      AP + +   +R          D + L  A++    L+     +
Sbjct: 116 LSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPNDLQRADQIYLQLMVNLESY 175

Query: 563 AFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTY 622
              R+ +L  + S++ + + +    + ++ A   L+ S     +   +L  GN MND   
Sbjct: 176 WGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDT-- 233

Query: 623 RGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKS 682
              AQ FKL TL +L  +K T    T L++V +                           
Sbjct: 234 SKQAQGFKLSTLQRLTFIKDTTNSMTFLNYVEKI-------------------------- 267

Query: 683 EEFVEDSSPQSAEKYSILGLQVVSGLSTELEDVKKAAVIDADSVTATVSKLSTSLTKTKA 742
              V  + P              +   +ELE V     +  + +       S S+   + 
Sbjct: 268 ---VRLNYPS------------FNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVER 312

Query: 743 FLDTEMKNKDEKTE----FYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSG 798
            ++    +   K              L  A      L +E K  +   +S    +  +SG
Sbjct: 313 SVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSG 372

Query: 799 -KDEGLRLFTIVRDFLIMLDKSCKQVK 824
            K   +  F    DF+    K+  Q  
Sbjct: 373 DKFAKISFFKKFADFINEYKKAQAQNL 399

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	876
d1ux5a_	411	Bni1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	100.0
d1v9da_	332	Diaphanous protein homolog 1, dia1 {Mouse (Mus mus	100.0

>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Bni1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6e-61  Score=541.23  Aligned_cols=365  Identities=19%  Similarity=0.236  Sum_probs=316.3

Q ss_pred             cccccCcccccccccccCCCCcccccccccCcc------ccchHHHHhhhccCCCCCccccCCCCCCCCCcccccccccC
Q 039012          411 GAAKTKLKPFFWDKVLASPDHAMVWHEISSGSF------QFNEEMIESLFGYKPATKSRNECGKSNSVSSESSAQYIQII  484 (876)
Q Consensus       411 ~~pk~KLK~l~W~KI~~~~~~~TIW~~i~~~s~------~lD~e~lE~lF~~k~~~~~k~~~kk~~s~s~~~~~~~vslL  484 (876)
                      +.|+.|||++||++|+.  .++|||+.+.+..+      .+|++.||++|+.++......        ...++.+.++||
T Consensus         3 PkP~~klK~l~W~ki~~--~~~tiW~~i~~~~~~~~~~~~~~~~~le~~F~~k~~~~~~~--------~~~~~~~~~~lL   72 (411)
T d1ux5a_           3 PRPHKKLKQLHWEKLDC--TDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLAS--------KRKEDLQKITFL   72 (411)
T ss_dssp             CCCSSCBCCCCCCCCSS--CCSSSCCSSHHHHHHHHHHHTTHHHHHHHHTBSSCCHHHHH--------HHHHTTTSBCCS
T ss_pred             CCCCCCCCCCCceeCCC--CCCCcchhcccccchhHHHhhhhHHHHHHHhccCCCCCCcc--------cccccccccccC
Confidence            35778999999999963  46899999876433      357788999999876422110        112345679999


Q ss_pred             ChhHHHHHHHHHhhc-CCCHHHHHHHHhhCCC--CCHHHHH--------------HHHhcCCChHHHHHhhcCC------
Q 039012          485 DTRKAQNLSIILRAL-NLTSEEVVDALEEGNE--LPLELLQ--------------TLLKMAPTTDEELKLRLFP------  541 (876)
Q Consensus       485 D~KraqNi~I~L~~l-k~s~eeI~~aI~~~d~--L~~e~L~--------------~Llk~~Pt~eE~~~L~~~~------  541 (876)
                      |+||+|||+|+|++| ++++++|++||.++|.  |+.+.+.              .|.+++||.+|++.++.|.      
T Consensus        73 d~kr~qni~I~L~~~~~~s~~~i~~ai~~~d~~~l~~~~l~~ll~~~~~~~~~~~~l~~~lPt~eE~~~l~~~~~~~~~~  152 (411)
T d1ux5a_          73 SRDISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPE  152 (411)
T ss_dssp             CHHHHHHHHHHTGGGTTSCHHHHHHHHHTTTHHHHTCHHHHHHTTCHHHHCCCHHHHHHTGGGCCCCTTCCCGGGCCCCS
T ss_pred             cHHHHHHHHHHHHHccCCCHHHHHHHHHhcChhhcCHHHHHHHHhhcchhhhHHHHHHHhCCCcHHHHHHHHHHhhcccc
Confidence            999999999999999 6999999999998873  5555554              4558999999999998884      


Q ss_pred             CCCCCCChHHHHHHHhcC--cccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccccCC
Q 039012          542 GDISQLGPAERFLKTLVD--IPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMND  619 (876)
Q Consensus       542 gd~~~L~~aEqFl~~l~~--Ip~~~~RL~~llf~~~f~~~~~~l~~~l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN~  619 (876)
                      ||.+.|+.+|||+++|+.  ||++..||+||+|+.+|.+.+.++.+.+..+..||++|++|..|+.||++||++|||||+
T Consensus       153 ~d~~~L~~~Eqf~~~l~~~~i~~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~  232 (411)
T d1ux5a_         153 KDPNDLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMND  232 (411)
T ss_dssp             SCSTTBCHHHHHHHHTTTTTTTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSC
T ss_pred             CChhhcCHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHhhhhcC
Confidence            788999999999999874  899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccceeccchhhhhcccCCCCCccHHHHHHHHHHHhhhhhhhhhhcccCCccccccccchhccCCChhhHHHHhh
Q 039012          620 GTYRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSI  699 (876)
Q Consensus       620 gt~rG~A~GFkL~SL~KL~d~Ks~D~k~TLLhflv~~Iir~e~~~a~~~~~e~~s~~~~~~k~~dll~~~~~~~~e~y~~  699 (876)
                      |+  |+|+||+|++|.||.++|++|+++|||||||+.+.+..                     +                
T Consensus       233 g~--~~A~GFkL~sL~kL~d~Ks~d~~~tLL~yiv~~~~~~~---------------------p----------------  273 (411)
T d1ux5a_         233 TS--KQAQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNY---------------------P----------------  273 (411)
T ss_dssp             GG--GCCSCCCGGGGGGSSSCBCTTSCSBHHHHHHHHHHHHC---------------------G----------------
T ss_pred             CC--CCcceeehHHHHHhhhccCCCCCeeHHHHHHHHHHHhC---------------------c----------------
Confidence            86  57999999999999999999999999999998764321                     1                


Q ss_pred             hhhhhhccchhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhhh----cccccchhhHHHHHHHHHHHHHHHHH
Q 039012          700 LGLQVVSGLSTELEDVKKAAVIDADSVTATVSKLSTSLTKTKAFLDTEMK----NKDEKTEFYNVVTKFLERAETDIAWL  775 (876)
Q Consensus       700 lgL~~V~~Ls~EL~~V~kAA~vd~d~L~~~v~~L~~~L~~~k~~l~~~~k----~~~edd~F~e~m~~Fle~Ae~ei~~L  775 (876)
                          .+..|.+||.+|..|++++++.|..++++|..++..+++.++....    ....+++|..+|..|++.|+.++..+
T Consensus       274 ----~l~~~~~el~~v~~a~~~~~~~l~~~~~~L~~~l~~i~~~~~~~~~~~~~~~~~~d~f~~~~~~fl~~~~~~~~~l  349 (411)
T d1ux5a_         274 ----SFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLL  349 (411)
T ss_dssp             ----GGGGHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTTCTTSSCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ----HhhccHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence                1456788999999999999999999999999999999988764322    22457889999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccccCCCcc-cchhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 039012          776 LEEEKRIMALVKSTADYFHGNSGK-DEGLRLFTIVRDFLIMLDKSCKQVKITTK  828 (876)
Q Consensus       776 ~e~~k~~~~l~k~~~~YFged~~k-~e~~~fF~iv~dFl~~f~ka~kEv~~~~~  828 (876)
                      ...++++.+.+++++.||||++.. ..+++||++|.+|+.+|++|++|+.++++
T Consensus       350 ~~~~~~~~~~~~~~~~yfGEd~~~~~~~~~fF~~~~~F~~~~~~a~~en~~~~e  403 (411)
T d1ux5a_         350 EDEVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNLAAEE  403 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999864 57789999999999999999999987766

>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Diaphanous protein homolog 1, dia1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.9e-59  Score=515.01  Aligned_cols=309  Identities=26%  Similarity=0.388  Sum_probs=267.0

Q ss_pred             cccccCChhHHHHHHHHHhhcCCCHHHHHHHHhhCC--CCCHHHHHHHHhcCCChHHHHHhhcCCCCCCCCChHHHHHHH
Q 039012          479 QYIQIIDTRKAQNLSIILRALNLTSEEVVDALEEGN--ELPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAERFLKT  556 (876)
Q Consensus       479 ~~vslLD~KraqNi~I~L~~lk~s~eeI~~aI~~~d--~L~~e~L~~Llk~~Pt~eE~~~L~~~~gd~~~L~~aEqFl~~  556 (876)
                      ++|+|||+||+|||+|+|++|++++++|++||.++|  .|+.|.|+.|++++||+||++.|++|.||.+.|+++|||+++
T Consensus         2 k~i~vLd~kr~~ni~I~L~~~k~~~~~i~~ai~~~D~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~E~f~~~   81 (332)
T d1v9da_           2 KELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDDLAESEQFGVV   81 (332)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHSCCHHHHHHHHTCGGGGGGSCHHHHHHHH
T ss_pred             ceeEeccHHHHHHHHHHHhhCCcCHHHHHHHHHhCCcccCCHHHHHHHHHhCcCHHHHHHHHHhcCChhhcChHHHHHHH
Confidence            579999999999999999999999999999999986  499999999999999999999999999999999999999999


Q ss_pred             hcCcccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccccCCCCCCCcccceeccchhh
Q 039012          557 LVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLK  636 (876)
Q Consensus       557 l~~Ip~~~~RL~~llf~~~f~~~~~~l~~~l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN~gt~rG~A~GFkL~SL~K  636 (876)
                      |+.||+|..||++|+|+.+|++.++++.+.++++..||++|++|..|+.||++||++|||||+|+.||+|+||+|++|.|
T Consensus        82 l~~ip~~~~Rl~~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~~L~~iL~~GN~mN~g~~~g~A~GFkL~sL~k  161 (332)
T d1v9da_          82 MGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCK  161 (332)
T ss_dssp             HHTSTTHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTCHHHHHCC------------------------CCHHH
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcchhccccccccccccCHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCCCCccHHHHHHHHHHHhhhhhhhhhhcccCCccccccccchhccCCChhhHHHHhhhhhhhhccchhhHHHHH
Q 039012          637 LADVKGTDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELEDVK  716 (876)
Q Consensus       637 L~d~Ks~D~k~TLLhflv~~Iir~e~~~a~~~~~e~~s~~~~~~k~~dll~~~~~~~~e~y~~lgL~~V~~Ls~EL~~V~  716 (876)
                      |.|+|++|+++||||||++.+.+..                     +                    .+..|.+||.+|.
T Consensus       162 L~d~Ks~d~~~tLL~~iv~~~~~~~---------------------p--------------------~l~~~~~eL~~v~  200 (332)
T d1v9da_         162 LRDTKSADQKMTLLHFLAELCENDH---------------------P--------------------EVLKFPDELAHVE  200 (332)
T ss_dssp             HHHSBCSSTTSBHHHHHHHHHHHSC---------------------C--------------------TTSSGGGGCTTHH
T ss_pred             HhhccCCCCCccHHHHHHHHHHHhC---------------------c--------------------hhccchhhhhhHH
Confidence            9999999999999999998664311                     1                    1456888999999


Q ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 039012          717 KAAVIDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGN  796 (876)
Q Consensus       717 kAA~vd~d~L~~~v~~L~~~L~~~k~~l~~~~k~~~edd~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~~YFged  796 (876)
                      .|++++++.|..++..|.+++..++..++......+.+++|...|..|+..|+.++..|.+.++++.+.+++++.||||+
T Consensus       201 ~ask~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~d~f~~~~~~Fl~~a~~~l~~l~~~~~~~~~~~~~~~~yfgEd  280 (332)
T d1v9da_         201 KASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFD  280 (332)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999988877544556778899999999999999999999999999999999999999999


Q ss_pred             CcccchhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 039012          797 SGKDEGLRLFTIVRDFLIMLDKSCKQVKITTK  828 (876)
Q Consensus       797 ~~k~e~~~fF~iv~dFl~~f~ka~kEv~~~~~  828 (876)
                      +.+..+.+||++|.+|+..|++|++|+.++++
T Consensus       281 ~~~~~~~efF~~~~~F~~~~~~a~~e~~~~~~  312 (332)
T d1v9da_         281 PKKLSVEEFFMDLHNFRNMFLQAVKENQKRRE  312 (332)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99989999999999999999999999976655