Citrus Sinensis ID: 039015

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-----
Protein Sequence
MTKKLYGLGRRVLTFPAVHPCESISPSTLLISLIDLAHDICTYKSEFFSTNKRNALKAIRQVHNLLIFLEELRVESADIPGSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSDRVSNQLRLFIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAIFETDPDDKRVLNDVIRILGRFEDGIRPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEITIEYLNVDKRSELALLSSLMGFLSYCKCIMFDLVDNEASQQVSKKCCNNMLGGLTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSIAEESGHKNRDITRTVLAGSLAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYERHSSGSTTPVLPQDRSVHVW
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHccccHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcEEEEEccccccccccccccccccccccccHHcccccEHHHccccEEEEccccccHHHHHHHHHcccccccccccEcccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHcccccHcHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcHHHccccccHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHcHHHHHHHHHcccccccHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHccccHccHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEc
Coil and Loop (DISEMBL)
mtkklyglgrrvltfpavhpcesispstLLISLIDLAHDICTYKSEFFSTNKRNALKAIRQVHNLLIFLEELRvesadipgSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSDRVSNQLRLFIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAifetdpddkrVLNDVIRILGrfedgirpdksEVKRVLDYLGITKWSQCNQEVKFLDSEITIEYLNVDKRSELALLSSLMGFLSYCKCIMFDLVDNEASQQVSKKCCnnmlggltpddftcpisleimkdpvtlstghtydraSILKWFRagnstcpktgerlqSKELLVNLVLKRIIQDWSVDNGVSIaeesghknrditRTVLAGSLAAEGAMKLLANFISDrllegtseekNKVAYEVRLLTKSsifnrsclvevGCIPSLLKLlsskdsstQENAIAALLNLSkhcksksmvvesGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLltssdseeLITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYerhssgsttpvlpqdrsvhvw
Flexible Loop (DISEMBL)
MTKKLYGLGRRVLTFPAVHPCESISPSTLLISLIDLAHDICTYKSEFFSTNKRNALKAIRQVHNLLIFLEELRVESADIPGSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSDRVSNQLRLFIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARkaifetdpddkrvlNDVIRIlgrfedgirpdkseVKRVLDYLgitkwsqcnqeVKFLDSEITIEYLNVDKRSELALLSSLMGFLSYCKCIMFDLVDNEASQQVSKKCCNNMLGGLTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNStcpktgerlqsKELLVNLVLKRIIQDWSVDNGVSiaeesghknrdiTRTVLAGSLAAEGAMKLLANFISDRllegtseeknkVAYEVRLLTkssifnrscLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEfyerhssgsttpvlpqdrsvhvw
Low Complexity Region (SEG)
MTKKLYGLGRRVLTFPAVHPCEsispstllislidlAHDICTYKSEFFSTNKRNALKAIRQVHNLLIFLEELRVESADIPGSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSDRVSNQLRLFIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAIFETDPDDKRVLNDVIRILGRFEDGIRPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEITIEYLNVDKRSELALLSSLMGFLSYCKCIMFDLVDNEASQQVSKKCCNNMLGGLTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSIAEESGHKNRDITRTVLAGSLAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPsllkllsskdssTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKspslmgslysllsqgssRASKKASALIRILHEFYERHSSGSTTPVLPQDRSVHVW
Disordered region (IsUnstruct)
****LYGLGRRVLTFPAVHPCESISPSTLLISLIDLAHDICTYKSEFFSTNKRNALKAIRQVHNLLIFLEELRVESADIPGSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSDRVSNQLRLFIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAIFETDPDDKRVLNDVIRILGRFEDGIRPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEITIEYLNVDKRSELALLSSLMGFLSYCKCIMFDLVDNEASQQVSKKCCNNMLGGLTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSIAEESGHKNRDITRTVLAGSLAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLL**********AIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLL************ALIRILHEFY*********************
Disordered Region (DISOPRED)
*****************V*******P*TLLISLIDLAHDICTYKSEFFSTNKRNALKAIRQVHNLLIFLEELR***********ISLSELHLTFQRIRYLLEDCTREGARLWMLMKSDRVSNQLRLFIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAIFETDPDDKRVLNDVI**********************YLGITKWSQCNQEVKF*********************SSLMGFLSYCKC**************************TPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSI***********TRTVLAGSLAAEGAMKLLANF************KNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRIL******************DRSVHVW
Disordered Region (DISEMBL)
MTKKLYGLGRRVLTFPAVHPCESISPSTLLISLIDLAHDICTYKSEFFSTNKRNALKAIRQVHNLLIFLEELRVESADIPGSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSDRVSNQLRLFIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAIFETDPDDKRVLNDVIRILGRFEDGIRPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEITIEYLNVDKRSELALLSSLMGFLSYCKCIMFDLVDNEASQQVSKKCCNNMLGGLTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSIAEESGHKNRDITRTVLAGSLAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLL***********SALIRILHEFYERHSSGSTTPVLPQDRSVHVW
Disordered Region (DISPRO)
*********RRVLTFPAVHPCESISPSTLLISLIDLAHDICTYKSEFFSTNKRNALKAIRQVHNLLIFLEELRVESADIPGSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSDRVSNQLRLFIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAIFETDPDDKRVLNDVIRILGRFEDGIRPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEITIEYLNVDKRSELALLSSLMGFLSYCKCIMFDLV*****************GGLTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSIA*********************EGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYERH********LPQDRSVHVW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTKKLYGLGRRVLTFPAVHPCESISPSTLLISLIDLAHDICTYKSEFFSTNKRNALKAIRQVHNLLIFLEELRVESADIPGSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSDRVSNQLRLFIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAIFETDPDDKRVLNDVIRILGRFEDGIRPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEITIEYLNVDKRSELALLSSLMGFLSYCKCIMFDLVDNEASQQVSKKCCNNMLGGLTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSIAEESGHKNRDITRTVLAGSLAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYERHSSGSTTPVLPQDRSVHVW
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	685	2.2.26 [Sep-21-2011]
Q9XIJ5	697	U-box domain-containing p	yes	no	0.985	0.968	0.479	1e-178
O80742	686	U-box domain-containing p	no	no	0.973	0.972	0.482	1e-177
Q9C7R6	729	U-box domain-containing p	no	no	0.811	0.762	0.321	7e-78
Q9LZW3	674	U-box domain-containing p	no	no	0.931	0.946	0.276	2e-74
Q6EUK7	728	U-box domain-containing p	no	no	0.843	0.793	0.320	6e-71
Q9SNC6	660	U-box domain-containing p	no	no	0.889	0.922	0.314	4e-70
Q5VRH9	611	U-box domain-containing p	no	no	0.778	0.872	0.318	4e-69
Q0IMG9	694	E3 ubiquitin-protein liga	no	no	0.789	0.779	0.325	1e-65
A2ZLU6	694	Protein spotted leaf 11 O	N/A	no	0.789	0.779	0.325	1e-65
Q8VZ40	632	U-box domain-containing p	no	no	0.773	0.838	0.327	1e-65

>sp|Q9XIJ5|PUB18_ARATH U-box domain-containing protein 18 OS=Arabidopsis thaliana GN=PUB18 PE=2 SV=1

 Score =  624 bits (1610), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 333/695 (47%), Positives = 471/695 (67%), Gaps = 20/695 (2%)

Query: 7   GLGRRVLTFPAVHPCESISPSTLLISLIDLAHDICTYKSEFFSTNKRNALKAIRQVHNLL 66
           G GRR+LTFP V P ESIS  TLL SLI LA DI T+KS+ FSTNK++  + +R++ NLL
Sbjct: 7   GSGRRILTFPTVEPSESISIVTLLDSLIQLAGDILTFKSKHFSTNKQSFRETLRRIQNLL 66

Query: 67  IFLEELRVESADI-----PGSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSDRVS 121
           +  EE+R+   +        +   SL E+H+ FQ++++LLEDCTR+GARL M+M SD+VS
Sbjct: 67  VVFEEIRIRIRNSRRYFHDSAAASSLKEIHVGFQKLKFLLEDCTRDGARLCMMMNSDQVS 126

Query: 122 NQLRLFIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAIFETDPDDKRVLNDVIRI 181
           + LR+  R+I T+L   P+A++D+++EV EL+DLV+RQARK   + + +DKR ++ + RI
Sbjct: 127 DHLRVLTRSISTSLSAFPVASVDLTTEVNELIDLVVRQARKYGVQPETNDKRAVSSINRI 186

Query: 182 LGRFEDGIRPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEITIEYLNVDKRS---ELALL 238
           L  F + + PD  E+ R+LD++GI KW  C +E+ FL  EI  E L+  K+    ++ LL
Sbjct: 187 LALFVNRVVPDPDEINRILDHVGIRKWGDCVKEINFLGEEIDAERLDEKKKKSSDQVELL 246

Query: 239 SSLMGFLSYCKCIMFDLV---DNEASQQVSKKCCNNMLGGLTPDDFTCPISLEIMKDPVT 295
           SSLMGF+ YC+CI+   +   D+    +   K  ++++ GL  +D  CPISLEIM DPV 
Sbjct: 247 SSLMGFICYCRCIILGRIERDDHHNHHEDGIKKDHDLIRGLKVEDLLCPISLEIMTDPVV 306

Query: 296 LSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSIAEES 355
           + TGHTYDR+SI KWF +GN TCP TG+ L S EL+ N+ ++++I+     NG+ +A  S
Sbjct: 307 IETGHTYDRSSITKWFGSGNITCPITGKILTSTELVDNVSVRQVIRKHCKTNGIVLAGIS 366

Query: 356 GHKNRDITRTVLAGSLAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRS 415
             + R     V+  SLAA+GA KL+A F++  L+ G  E   +   E+R+ TK+S FNRS
Sbjct: 367 --RRRKSHDDVVPESLAAKGAGKLIAKFLTSELINGGEEMIYRAVREIRVQTKTSSFNRS 424

Query: 416 CLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGL 475
           CLV+ G +  LLKLLSS D   QENA+A +LNLSKH   KS +    GL  +V+++ +G 
Sbjct: 425 CLVKAGAVTPLLKLLSSVDIRIQENAMAGILNLSKHVTGKSKIAGE-GLKILVEILNEGA 483

Query: 476 KVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR--DGTDRSKKNALVAIFGLL 533
           K E R ++A+ LFY++S+E+Y +LIGENP+AIP L+++V+  D  D +K++AL+A+ GLL
Sbjct: 484 KTETRLYSASALFYLSSVEDYSRLIGENPDAIPGLMNIVKGDDYGDSAKRSALLAVMGLL 543

Query: 534 MHSGNHWRFLAAGAVPLLLNLLTSSD-SEELITDSLAVLATLAEKLDGTIAILHHGALDM 592
           M S NHWR LAAGAVP+LL+LL S + S  L  D LA LA LAE  DGTI ++  G L +
Sbjct: 544 MQSDNHWRVLAAGAVPILLDLLRSGEISGGLTADCLATLAKLAEYPDGTIGVIRRGGLKL 603

Query: 593 IMKILDSC--TSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRAS 650
            +KIL S   +  A K++CV L+L LC+NGG +VV +LVK+  +MGSLY++LS G    S
Sbjct: 604 AVKILSSSEDSPVAVKQHCVGLILNLCLNGGRDVVGVLVKNSLVMGSLYTVLSNGEYGGS 663

Query: 651 KKASALIRILHEFYERHSSGSTTPVLPQDRSVHVW 685
           KKASALIR++HEF ER  +GS  P L + R VH W
Sbjct: 664 KKASALIRMIHEFQER-KTGSVEPNLQRGRFVHAW 697

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|O80742|PUB19_ARATH U-box domain-containing protein 19 OS=Arabidopsis thaliana GN=PUB19 PE=2 SV=1

 Score =  621 bits (1601), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 334/692 (48%), Positives = 469/692 (67%), Gaps = 25/692 (3%)

Query: 7   GLGRRVLTFPAVHPCESISPSTLLISLIDLAHDICTYKSEFFSTNKRNALKAIRQVHNLL 66
           G  RR+LTFPAV+PCESIS +TL+ SL+ LA +I ++K + FSTNKR+  + +R V  L+
Sbjct: 7   GSSRRILTFPAVNPCESISLTTLVDSLLQLAGEILSFKPKHFSTNKRSVKETLRHVQTLV 66

Query: 67  IFLEELRVE--SADIPG--SLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSDRVSN 122
           IF EELR++     IP   S+++SLSELH+ FQ++++LL+DCTR+GA+L+MLM S +VS 
Sbjct: 67  IFFEELRIQIRVGSIPAGRSVILSLSELHVIFQKLKFLLDDCTRDGAKLYMLMNSGQVSA 126

Query: 123 QLRLFIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAIFETDPDDKRVLNDVIRIL 182
             R   R+I T+LD  P+ ++D+  EV EL+ LVMRQ RK+    D DDKR ++ V    
Sbjct: 127 HFRDLTRSISTSLDTFPVRSVDLPGEVNELIYLVMRQTRKSEARPDRDDKRAIDSVYWFF 186

Query: 183 GRFEDGIRPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEITIEYLNVDKRS--ELALLSS 240
             FE+ I P+  E+ RVLD++G+ KW  C +E+ FL  EI+     V K+S  E+ LLS+
Sbjct: 187 NLFENRINPNSDEILRVLDHIGVRKWRDCVKEIDFLREEIS-----VGKKSNIEIELLSN 241

Query: 241 LMGFLSYCKCIMFDLVDNEASQQVSKKCCNNMLGGLTPDDFTCPISLEIMKDPVTLSTGH 300
           LMGF+ YC+C++   +D +  ++  ++    M+  L  DD  CPISLEIM DPV L +GH
Sbjct: 242 LMGFICYCRCVILRGIDVDDEEKDKEEDDLMMVRSLNVDDLRCPISLEIMSDPVVLESGH 301

Query: 301 TYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSIAEESGHKNR 360
           TYDR+SI KWF +GN TCPKTG+ L S  L+ N  +K++IQ +S  NGV + ++ G K  
Sbjct: 302 TYDRSSITKWFASGNITCPKTGKTLVSTVLVDNFSVKQVIQSYSKQNGVVMGQK-GKKKV 360

Query: 361 DITRTVLAGSLAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEV 420
           D+     A SLAAE A KL A F++  L++G  EE  K   E+R+LTK+S F RSCLVE 
Sbjct: 361 DV-----AESLAAEEAGKLTAEFLAGELIKGDEEEMVKALVEIRILTKTSTFYRSCLVEA 415

Query: 421 GCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV--ESGGLDFIVDMVKKGLKVE 478
           G + SL+K+L S D   QENA+A ++NLSK    K+ +V  + GGL  IV+++  G + E
Sbjct: 416 GVVESLMKILRSDDPRIQENAMAGIMNLSKDIAGKTRIVGEDGGGLRLIVEVLNDGARRE 475

Query: 479 ARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR--DGTDRSKKNALVAIFGLLMHS 536
           +RQ+AAA LFY++S+ +Y +LIGE  +AIP LV +V+  D  D +K+NAL+AI  LLM+ 
Sbjct: 476 SRQYAAAALFYLSSLGDYSRLIGEISDAIPGLVRIVKSCDYGDSAKRNALIAIRSLLMNQ 535

Query: 537 -GNHWRFLAAGAVPLLLNLLTSSD-SEELITDSLAVLATLAEKLDGTIAILHHGALDMIM 594
             NHWR LAAG VP+LL+L+ S + S+ +  DS+A+LA +AE  DG I++L  G L + +
Sbjct: 536 PDNHWRILAAGIVPVLLDLVKSEEISDGVTADSMAILAKMAEYPDGMISVLRRGGLKLAV 595

Query: 595 KILDSC-TSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKA 653
           KIL S   S A K++CV+LLL LC NGG++VV  L K+PS+MGSLY+  S G     KKA
Sbjct: 596 KILGSSEVSPATKQHCVALLLNLCHNGGSDVVGSLAKNPSIMGSLYTASSNGELGGGKKA 655

Query: 654 SALIRILHEFYERHSSGSTTPVLPQDRSVHVW 685
           SALI+++HEF ER  +G   PVL ++R VH W
Sbjct: 656 SALIKMIHEFQER-KTGPGEPVLERERFVHAW 686

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C7R6|PUB17_ARATH U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17 PE=2 SV=1

 Score =  292 bits (747), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 187/581 (32%), Positives = 318/581 (54%), Gaps = 25/581 (4%)

Query: 96  RIRYLLEDCTREGARLWMLMKSDRVSNQLRLFIRAIGTALDVLPLAAIDVSSEVKELVDL 155
           R + L++ C  + ++LW+L+++  +S       + I T LDVLP+  + +S +++E ++L
Sbjct: 116 RSKILVDYCA-QSSKLWLLLQNPSISGYFHDLNQEISTLLDVLPVNDLGLSDDIREQIEL 174

Query: 156 VMRQARKAIFETDPDDKRVLNDVIRILGRFEDGIRPDKSEVKRVL-DYLGITKWSQCNQE 214
           + RQ+RKA    D +D+ +       L  FE+G  P   +++    + LGI     C  E
Sbjct: 175 LQRQSRKARLYIDKNDESLRESFYSFLDGFENGKIPSSVDLRMFFVEKLGIRDSKSCRSE 234

Query: 215 VKFLDSEITIEYLNVDKRSELALLSSLMGFLSYCKCIMFDL--------VDNEASQQ--- 263
           ++FL+ +I     + D     ++++  +    YC+ ++F          ++N   +    
Sbjct: 235 IEFLEEQIVNH--DGDLEPTGSVINGFVAITRYCRFLLFGFEEDGMEWWIENNPKKPRKG 292

Query: 264 -VSKKCCNNMLGGLTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTG 322
            V+++  +  +    P DF CPISL++M DPV +STG TYDR SI +W   G+ TCPKTG
Sbjct: 293 FVAQEIGDTFI--TVPKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEEGHCTCPKTG 350

Query: 323 ERLQSKELLVNLVLKRIIQDWSVDNGVSIAEESGHKNRDITRTVLAGSLAAEGAMKLLAN 382
           + L    ++ N  LK +I  W   +G+S   E      +   + L    A E A K   +
Sbjct: 351 QMLMDSRIVPNRALKNLIVQWCTASGISYESEFTDSPNESFASALPTKAAVE-ANKATVS 409

Query: 383 FISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAI 442
            +   L +G+   +   A E+RLL K+   NR+ + E G IP L +LL+S+++  QEN++
Sbjct: 410 ILIKYLADGSQAAQTVAAREIRLLAKTGKENRAYIAEAGAIPHLCRLLTSENAIAQENSV 469

Query: 443 AALLNLSKHCKSKSMVVESGG-LDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIG 501
            A+LNLS + K+KS ++E G  L+ IV ++  GL VEA+++AAATLF ++++ EY+K I 
Sbjct: 470 TAMLNLSIYEKNKSRIMEEGDCLESIVSVLVSGLTVEAQENAAATLFSLSAVHEYKKRIA 529

Query: 502 ENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSE 561
              + + AL  ++++GT R KK+A+ A++ L  H  N  R +  G V  L+  L    +E
Sbjct: 530 IVDQCVEALALLLQNGTPRGKKDAVTALYNLSTHPDNCSRMIEGGGVSSLVGAL---KNE 586

Query: 562 ELITDSLAVLATLAEKLDGTIAI-LHHGALDMIMKILDSCTSRAGKEYCVSLLLALCING 620
            +  ++   LA L  +  G  AI     A+  +M ++   T R GKE  V+ LL LC +G
Sbjct: 587 GVAEEAAGALALLVRQSLGAEAIGKEDSAVAGLMGMMRCGTPR-GKENAVAALLELCRSG 645

Query: 621 GANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILH 661
           GA V   ++++P++ G L +LL  G+ RA +KA++L R+  
Sbjct: 646 GAAVAEKVLRAPAIAGLLQTLLFTGTKRARRKAASLARVFQ 686

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LZW3|PUB16_ARATH U-box domain-containing protein 16 OS=Arabidopsis thaliana GN=PUB16 PE=2 SV=1

 Score =  281 bits (718), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 190/687 (27%), Positives = 354/687 (51%), Gaps = 49/687 (7%)

Query: 10  RRVLTFPAVHPCESISPSTLLISLIDLAHDICTYKSEFFSTNKRNALKAIRQVHNLLIFL 69
           RR L   +    +  S + L  SL   +H+I + +   F   +RN+L  IR+V  L    
Sbjct: 14  RRPLVVGSFESPKLSSDTKLTRSLFLASHEISSMQPLPFIL-RRNSLSLIRKVKILASVF 72

Query: 70  EELRVESADI---PGSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSDRVSNQLRL 126
           +EL +  + +     S  +   E+ +  QRI+ L++DC+R  ++LW+L++ D V+     
Sbjct: 73  DELLLPRSQLVVYSQSAHLCFEEMQIVMQRIKSLIDDCSRV-SKLWLLLQIDIVAFNFHE 131

Query: 127 FIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAIFETDPDDKRVLNDVIRILGRFE 186
            +  + T LD+LPL   D+S + ++L+ L+ +Q   ++   D  D  +   V   +   +
Sbjct: 132 LVTDLSTVLDILPLHDFDLSDDAQDLISLLTKQCSDSVQFVDARDVALRRKVTDTIAGIK 191

Query: 187 DGIRPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEITIEYLNVDKRSELALLSSLMGFLS 246
             I PD S + ++ + LG++  +    E++ L+ EI  +   +D RS+ A  +SL+G + 
Sbjct: 192 HQISPDHSTLIKIFNDLGLSDSASLTDEIQRLEDEIQDQ---IDDRSKSAA-ASLIGLVR 247

Query: 247 YCKCIMFDLVDNEASQQVSKKCCNNMLGGLTPDDFTCPISLEIMKDPVTLSTGHTYDRAS 306
           Y KC+++      ++     +   ++     P DF CPI+LE+M+DPV ++TG TYDR S
Sbjct: 248 YSKCVLY----GPSTPAPDFRRHQSLSDANIPADFRCPITLELMRDPVVVATGQTYDRES 303

Query: 307 ILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSIAEESGHKNRDITRTV 366
           I  W ++G++TCPKTG+ L+   L+ N  LK +I  W  D  +                 
Sbjct: 304 IDLWIQSGHNTCPKTGQVLKHTSLVPNRALKNLIVLWCRDQKIPFE-------------- 349

Query: 367 LAGSLAAEGA--------MKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLV 418
           L G    E A         K++ +F+ ++L   +  + N V +E+R L KS    R+C+ 
Sbjct: 350 LYGDGGGEPAPCKEAVEFTKMMVSFLIEKL---SVADSNGVVFELRALAKSDTVARACIA 406

Query: 419 EVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVES-GGLDFIVDMVKKGLKV 477
           E G IP L++ L+++  S Q NA+  +LNLS   ++K+ ++E+ G L+ ++++++ G   
Sbjct: 407 EAGAIPKLVRYLATECPSLQINAVTTILNLSILEQNKTRIMETDGALNGVIEVLRSGATW 466

Query: 478 EARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG 537
           EA+ +AAATLF +A +  YR+ +G     +  LVD+ + G   SK++ALVAI  L+    
Sbjct: 467 EAKANAAATLFSLAGVSAYRRRLGRKARVVSGLVDLAKQGPTSSKRDALVAILNLVAERE 526

Query: 538 NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKIL 597
           N  RF+ AG       +  + D+ + + +    +     +  G +A+    +L  ++  +
Sbjct: 527 NVGRFVEAGV------MGAAGDAFQELPEEAVAVVEAVVRRGGLMAVSAAFSLIRLLGEV 580

Query: 598 DSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALI 657
               +   +E   + L+ +C  GG+ +VA +   P +   ++ ++  G++R  +KA++L+
Sbjct: 581 MREGADTTRESAAATLVTMCRKGGSELVAEMAAIPGIERVIWEMIGAGTARGGRKAASLM 640

Query: 658 RILHEFYERHSSGSTTPVLPQDRSVHV 684
           R    +  R ++G T     + +S+ V
Sbjct: 641 R----YLRRWAAGDTHNTAAETQSIVV 663

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6EUK7|PUB04_ORYSJ U-box domain-containing protein 4 OS=Oryza sativa subsp. japonica GN=PUB4 PE=2 SV=1

 Score =  269 bits (687), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 197/614 (32%), Positives = 316/614 (51%), Gaps = 36/614 (5%)

Query: 89  ELHLTFQRIRYLLEDCTREGARLWMLMKSDRVSNQLRLFIRAIGTALDVLPLAAIDVSSE 148
           EL++   R   L+      G R W L++S  ++   R     +   LDVLP A++ +S +
Sbjct: 103 ELYVVLFRAELLVSYVASAG-RAWALLRSPHLAASFRDLDAELAVVLDVLPAASLRLSHD 161

Query: 149 VKELVDLVMRQAR-KAIFET-DPDDKRVLNDVIRILGRFEDGIRPDKSEVKRVLDYLGIT 206
              L+DL+    R +A  +  DPD+  +   ++  L +F+ G  PD   ++ +L  +GI+
Sbjct: 162 ATGLLDLLRAHCRCRAPAQYHDPDEAALRERLMDALRQFDLGQPPDHPSLQSLLADMGIS 221

Query: 207 KWSQCNQEVKFLDSEITIEYLNVDKRSELALLSSLMGFLSYCKCIMFDLVDNEASQQVSK 266
             + C  E+ +L+ +I    L+ ++ ++L L+ S++  L YC   +FD  + +A +    
Sbjct: 222 TAASCRAEIDYLEEQI----LSQEEDTDLPLVGSVLALLRYCLFAVFDPSNAKALRDWPL 277

Query: 267 KCCNNML----GG-----LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNST 317
                 L    GG       P +F+CPISL++M+DPV  STG TYDR SI++W   G+ST
Sbjct: 278 SGNRQRLLSIGGGDDTSFSVPKEFSCPISLDLMRDPVVASTGQTYDRPSIIQWIEEGHST 337

Query: 318 CPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSIAEESGHKNRDITRTVLA--GSLAAEG 375
           CP +G+ L    L+ N  L+ +I  W    G+    +S   N  +   V A   S AA  
Sbjct: 338 CPNSGQTLADHRLVPNRALRSLISQWCGVYGLQY--DSPESNEGMAECVAASCSSRAAME 395

Query: 376 AMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDS 435
           A K  A  +   L +G+   K   A E+RLL K+   NR+ + ++G IP L +LL S D 
Sbjct: 396 ANKATARILVRMLEDGSENVKAVAAKEIRLLAKTGKQNRAFIADLGAIPLLCRLLLSNDW 455

Query: 436 STQENAIAALLNLSKHCKSKSMVVESGG-LDFIVDMVKKGLKVEARQHAAATLFYIASIE 494
             QENA+ ALLNLS    +K  ++E  G L  IV +++ G   EA+++AAATLF ++ + 
Sbjct: 456 MAQENAVTALLNLSIFEPNKGRIMEQEGCLRLIVGVLQNGWTTEAKENAAATLFSLSVVH 515

Query: 495 EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNL 554
            ++KLI   P A+  L  M+  GT R KK+A++A+F L  H  +  R L + AV  L+  
Sbjct: 516 NFKKLIMNEPGAVEELASMLTKGTSRGKKDAVMALFNLSTHPESSARMLESCAVVALIQS 575

Query: 555 LTSSDSEELITDSLAVLATLAEKLDGTIAILHH-GALDMIMKILDSCTSRA---GKEYCV 610
           L +    E    +LA+L           +I+H  G+ + ++  L     R    GKE  V
Sbjct: 576 LRNDTVSEEAAGALALLMK-------QPSIVHLVGSSETVITSLVGLMRRGTPKGKENAV 628

Query: 611 SLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILH--EFYERHS 668
           S L  +C  GG+ +V  + K P L   + ++   G+ RA KKAS ++++    +     +
Sbjct: 629 SALYEICRRGGSALVQRVAKIPGLNTVIQTITLNGTKRAKKKASLIVKMCQRSQMPSAMA 688

Query: 669 SGSTTPVLPQDRSV 682
            GST  V+  DRS+
Sbjct: 689 LGSTLTVV--DRSL 700

Possesses E3 ubiquitin-protein ligase in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1

 Score =  266 bits (680), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 205/651 (31%), Positives = 334/651 (51%), Gaps = 42/651 (6%)

Query: 32  SLIDLAHDICTYKSEFFSTNKRNALKAIRQVHNLLIFLEELRVESADIPGSLVISLSELH 91
           SLID+ ++I    S++  T K+      R++  L+   EE+R  +  I    + +L  L 
Sbjct: 11  SLIDVVNEIAAI-SDYRITVKKLCYNLARRLKLLVPMFEEIRESNEPISEDTLKTLMNLK 69

Query: 92  LTFQRIRYLLEDCTREGARLWMLMKSDRVSNQLRLFIRAIGTALDVLPLAAIDVSSEVKE 151
                 +  L+ C+ +G++++++M+ ++V+++L      +  +L  +P   +D+S EV+E
Sbjct: 70  EAMCSAKDYLKFCS-QGSKIYLVMEREQVTSKLMEVSVKLEQSLSQIPYEELDISDEVRE 128

Query: 152 LVDLVMRQARKAIFETDPDDKRVLNDVIRILGRFEDGIRPDKSEVKRVLDYLGITKWSQC 211
            V+LV+ Q R+A    D  D  +  D+  +  +  D +   +  ++RV   L + +    
Sbjct: 129 QVELVLSQFRRAKGRVDVSDDELYEDLQSLCNKSSD-VDAYQPVLERVAKKLHLMEIPDL 187

Query: 212 NQEVKFLDSEITIEYLNVDKR-SELALLSSLMGFLSYCKCIMFDLVDNEASQQVSKKCCN 270
            QE   L   +     +V +   E+A++      L   K  +    DN   Q+V     N
Sbjct: 188 AQESVALHEMVASSGGDVGENIEEMAMV------LKMIKDFVQTEDDNGEEQKVG---VN 238

Query: 271 NMLGGLT-----------PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCP 319
           +   G T           PDDF CPISLE+M+DPV +S+G TY+R  I KW   G+STCP
Sbjct: 239 SRSNGQTSTAASQKIPVIPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCP 298

Query: 320 KTGERLQSKELLVNLVLKRIIQDWSVDNGVSIAEESGHKNRDITRTVLAGSLAAEGAMKL 379
           KT + L S  L  N VL+ +I  W   N +   E     +    R V + S  AE     
Sbjct: 299 KTQQALTSTTLTPNYVLRSLIAQWCEANDI---EPPKPPSSLRPRKVSSFSSPAE----- 350

Query: 380 LANFISD---RLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSS 436
            AN I D   RL  G  E++   A E+RLL K +  NR  + E G IP L+ LLS+ DS 
Sbjct: 351 -ANKIEDLMWRLAYGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSR 409

Query: 437 TQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEY 496
            QE+++ ALLNLS    +K  +V +G +  IV ++KKG  +EAR++AAATLF ++ I+E 
Sbjct: 410 IQEHSVTALLNLSICENNKGAIVSAGAIPGIVQVLKKG-SMEARENAAATLFSLSVIDEN 468

Query: 497 RKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLT 556
           +  IG    AIP LV ++ +GT R KK+A  A+F L ++ GN  + + AG +P L  LLT
Sbjct: 469 KVTIGAL-GAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLT 527

Query: 557 SSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLAL 616
              S  ++ ++LA+LA L+   +G   I    A+  +++ + + + R  +E   ++L+ L
Sbjct: 528 EPGS-GMVDEALAILAILSSHPEGKAIIGSSDAVPSLVEFIRTGSPR-NRENAAAVLVHL 585

Query: 617 CINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYERH 667
           C     ++V    +   LMG L  L   G+ R  +KA+ L+  +    E+ 
Sbjct: 586 CSGDPQHLVE--AQKLGLMGPLIDLAGNGTDRGKRKAAQLLERISRLAEQQ 634

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1

 Score =  263 bits (672), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 180/566 (31%), Positives = 300/566 (53%), Gaps = 33/566 (5%)

Query: 105 TREGARLWMLMKSDRVSNQLRLFIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAI 164
           TR+G+++   M+ D   ++     R I  ALD LP     +  EV+E V LV  Q ++A 
Sbjct: 66  TRDGSKIDQAMRGDAFLDEFAGVNRQIHLALDALPYNTFHMPQEVQEQVALVHSQFQRAS 125

Query: 165 FETDPDDKRVLNDVIRILGRFEDGIRPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEITI 224
             TDP D ++  D+   L         D + + R+   L +   +    E       I +
Sbjct: 126 TRTDPPDTQLSMDLAWALTDNPS----DPALLTRISHKLQLHTMADMKNE------SIAL 175

Query: 225 EYLNVDKRSE----LALLSSLMGFLSYCKCIMFDLVDNEASQQVSKKCCN-NMLGGLTPD 279
             + +    E    +  +SSL+  L  C      + ++ A+  ++ +  +      + PD
Sbjct: 176 HNMVISTAGEPDGCVDQMSSLLKKLKDCV-----VTEDHANDALTTRSASIKHRSPIIPD 230

Query: 280 DFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRI 339
           +F CPISLE+M+DPV +S+G TY+R+ I KW  +G+ TCPKT + L    L  N VLK +
Sbjct: 231 EFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFVLKSL 290

Query: 340 IQDWSVDNGVSIAEESGHKNRDITRTVLAGSLAAEGAMKLLANFISDRLLEGTSEEKNKV 399
           I  W   NG+ +      KN+  +R   A   +      L++  + +RL  G  +E+   
Sbjct: 291 ISQWCEANGIELP-----KNKQNSRDKKAAKSSDYDHAGLVS--LMNRLRSGNQDEQRAA 343

Query: 400 AYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV 459
           A E+RLL K ++ NR C+ E G IP L+ LLSS D  TQE+A+ ALLNLS H  +K+ +V
Sbjct: 344 AGEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVTALLNLSIHENNKASIV 403

Query: 460 ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTD 519
           +S  +  IV+++K G  +E R++AAATLF ++ ++E +  IG    AIP L++++ DG+ 
Sbjct: 404 DSHAIPKIVEVLKTG-SMETRENAAATLFSLSVVDENKVTIGAA-GAIPPLINLLCDGSP 461

Query: 520 RSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLD 579
           R KK+A  AIF L ++ GN  R + AG V  L+N L    +  +I ++L++L+ LA   +
Sbjct: 462 RGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDP-TGGMIDEALSLLSILAGNPE 520

Query: 580 GTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLY 639
           G I I     +  +++++ + + R  +E   ++L  LC       +A   K+  +  +L 
Sbjct: 521 GKIVIARSEPIPPLVEVIKTGSPR-NRENAAAILWLLCSADTEQTLA--AKAAGVEDALK 577

Query: 640 SLLSQGSSRASKKASALIRILHEFYE 665
            L   G+ RA +KAS+++ ++H+  E
Sbjct: 578 ELSETGTDRAKRKASSILELMHQANE 603

Possesses E3 ubiquitin-protein ligase in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2

 Score =  251 bits (641), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 182/560 (32%), Positives = 305/560 (54%), Gaps = 19/560 (3%)

Query: 106 REGARLWMLMKSDRVSNQLRLFIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAIF 165
           REG+R+ ++++ D V  + +  I  +  AL  +P   +D+S EV+E V+LV  Q ++A  
Sbjct: 105 REGSRISLVLERDSVMKKFQGVILQLEQALCDIPYNELDISDEVREQVELVHAQLKRAKE 164

Query: 166 ETDPDDKRVLNDVIRILGRFEDGIRPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEITIE 225
             D  D    ND++ +  +  D    + + + R+ + L +   +   QE   L  E+   
Sbjct: 165 RIDMPDDEFYNDLLSVYDKNYDP-SAELAILGRLSEKLHLMTITDLTQESLAL-HEMVAS 222

Query: 226 YLNVDKRSELALLSSLMGFLS-YCKCIMFDLVDNEASQQVSKKCCNNMLGGLTPDDFTCP 284
               D    +  +S L+  +  + +    D+    AS+ +     +  +    PD+F CP
Sbjct: 223 GGGQDPGEHIERMSMLLKKIKDFVQTQNPDMGPPMASRVLDSNGDSRPI--TIPDEFRCP 280

Query: 285 ISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWS 344
           ISLE+MKDPV +STG TY+RA I KW  +G+ TCP T +++ +  L  N VL+ +I  W 
Sbjct: 281 ISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVLRSLISQWC 340

Query: 345 VDNGVSIAEESGHKNRDITRTVLAGSLAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVR 404
             NG+   + S   N+         + A   + +   + +  +L    +EE+   A E+R
Sbjct: 341 ETNGMEPPKRSTQPNKP--------TPACSSSERANIDALLSKLCSPDTEEQRSAAAELR 392

Query: 405 LLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGL 464
           LL K +  NR C+ E G IP LL LLSS D  TQE+A+ ALLNLS H  +K+ ++ SG +
Sbjct: 393 LLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDNKASIISSGAV 452

Query: 465 DFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKN 524
             IV ++K G  +EAR++AAATLF ++ I+EY+  IG    AIPALV ++ +G+ R KK+
Sbjct: 453 PSIVHVLKNG-SMEARENAAATLFSLSVIDEYKVTIG-GMGAIPALVVLLGEGSQRGKKD 510

Query: 525 ALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAI 584
           A  A+F L ++ GN  R + AG VPL++ L+T+  +  L+ +++A+L+ L+   +G  AI
Sbjct: 511 AAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNP-TGALMDEAMAILSILSSHPEGKAAI 569

Query: 585 LHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALL-VKSPSLMGSLYSLLS 643
                + ++++++ S T R  +E   +++L LC +G  ++V L   +   +M  L  L  
Sbjct: 570 GAAEPVPVLVEMIGSGTPR-NRENAAAVMLHLC-SGEHHLVHLARAQECGIMVPLRELAL 627

Query: 644 QGSSRASKKASALIRILHEF 663
            G+ R  +KA  L+  +  F
Sbjct: 628 NGTDRGKRKAVQLLERMSRF 647

E3 ubiquitin-protein ligase that negatively regulates programmed cell death and disease resistance. Participates in flowering time control by mediating ubiquitination and subsequent proteasomal degradation of SPIN1.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2

 Score =  251 bits (641), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 182/560 (32%), Positives = 305/560 (54%), Gaps = 19/560 (3%)

Query: 106 REGARLWMLMKSDRVSNQLRLFIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAIF 165
           REG+R+ ++++ D V  + +  I  +  AL  +P   +D+S EV+E V+LV  Q ++A  
Sbjct: 105 REGSRISLVLERDSVMKKFQGVILQLEQALCDIPYNELDISDEVREQVELVHAQLKRAKE 164

Query: 166 ETDPDDKRVLNDVIRILGRFEDGIRPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEITIE 225
             D  D    ND++ +  +  D    + + + R+ + L +   +   QE   L  E+   
Sbjct: 165 RIDMPDDEFYNDLLSVYDKNYDP-SAELAILGRLSEKLHLMTITDLTQESLAL-HEMVAS 222

Query: 226 YLNVDKRSELALLSSLMGFLS-YCKCIMFDLVDNEASQQVSKKCCNNMLGGLTPDDFTCP 284
               D    +  +S L+  +  + +    D+    AS+ +     +  +    PD+F CP
Sbjct: 223 GGGQDPGEHIERMSMLLKKIKDFVQTQNPDMGPPMASRVLDSNGDSRPI--TIPDEFRCP 280

Query: 285 ISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWS 344
           ISLE+MKDPV +STG TY+RA I KW  +G+ TCP T +++ +  L  N VL+ +I  W 
Sbjct: 281 ISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVLRSLISQWC 340

Query: 345 VDNGVSIAEESGHKNRDITRTVLAGSLAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVR 404
             NG+   + S   N+         + A   + +   + +  +L    +EE+   A E+R
Sbjct: 341 ETNGMEPPKRSTQPNKP--------TPACSSSERANIDALLSKLCSPDTEEQRSAAAELR 392

Query: 405 LLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGL 464
           LL K +  NR C+ E G IP LL LLSS D  TQE+A+ ALLNLS H  +K+ ++ SG +
Sbjct: 393 LLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDNKASIISSGAV 452

Query: 465 DFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKN 524
             IV ++K G  +EAR++AAATLF ++ I+EY+  IG    AIPALV ++ +G+ R KK+
Sbjct: 453 PSIVHVLKNG-SMEARENAAATLFSLSVIDEYKVTIG-GMGAIPALVVLLGEGSQRGKKD 510

Query: 525 ALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAI 584
           A  A+F L ++ GN  R + AG VPL++ L+T+  +  L+ +++A+L+ L+   +G  AI
Sbjct: 511 AAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNP-TGALMDEAMAILSILSSHPEGKAAI 569

Query: 585 LHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALL-VKSPSLMGSLYSLLS 643
                + ++++++ S T R  +E   +++L LC +G  ++V L   +   +M  L  L  
Sbjct: 570 GAAEPVPVLVEMIGSGTPR-NRENAAAVMLHLC-SGEHHLVHLARAQECGIMVPLRELAL 627

Query: 644 QGSSRASKKASALIRILHEF 663
            G+ R  +KA  L+  +  F
Sbjct: 628 NGTDRGKRKAVQLLERMSRF 647

Defense related protein that negatively regulates programmed cell death. In vitro, possesses E3 ubiquitin ligase activity.

Oryza sativa subsp. indica (taxid: 39946)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1

 Score =  251 bits (641), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 183/559 (32%), Positives = 299/559 (53%), Gaps = 29/559 (5%)

Query: 108 GARLWMLMKSDRVSNQLRLFIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAIFET 167
           G++L+ L   D +  + R     I  AL  +P   I+VS EV+E V L+  Q ++A    
Sbjct: 89  GSKLFQLFDRDSLVEKFRDMTVEIEAALSQIPYEKIEVSEEVREQVQLLHFQFKRAKERW 148

Query: 168 DPDDKRVLNDVIRILGRFEDGIRPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEITIEYL 227
           +  D ++ +D    L   E+ + PD   +KR+   L +T   +  +E   +  E  + Y 
Sbjct: 149 EESDLQLSHD----LAMAENVMDPDPIILKRLSQELQLTTIDELKKESHAI-HEYFLSY- 202

Query: 228 NVDKRSELALLSSLMGFLSYCKCIMFDLVDNEASQ---QVSKKCCNNMLGGLTPDDFTCP 284
           + D       +SSL+  L        D V  E+S        +  +     + P+ F CP
Sbjct: 203 DGDPDDCFERMSSLLKNL-------VDFVTMESSDPDPSTGSRIVSRHRSPVIPEYFRCP 255

Query: 285 ISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWS 344
           ISLE+MKDPV +STG TY+R+SI KW  AG+ TCPK+ E L    L  N VLK +I  W 
Sbjct: 256 ISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWC 315

Query: 345 VDNGVSIAEESGHKNRDITRTVLAGSLAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVR 404
             NG+ + +  G       RT   G  ++    +     + ++L  GT+E++   A E+R
Sbjct: 316 ESNGIELPQNQGS-----CRTTKIGGSSSSDCDRTFVLSLLEKLANGTTEQQRAAAGELR 370

Query: 405 LLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGL 464
           LL K ++ NR C+ E G IP L++LLSS D  TQE+++ ALLNLS +  +K  +V++G +
Sbjct: 371 LLAKRNVDNRVCIAEAGAIPLLVELLSSPDPRTQEHSVTALLNLSINEGNKGAIVDAGAI 430

Query: 465 DFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKN 524
             IV+++K G  +EAR++AAATLF ++ I+E  K+      AI AL+ ++ +GT R KK+
Sbjct: 431 TDIVEVLKNG-SMEARENAAATLFSLSVIDE-NKVAIGAAGAIQALISLLEEGTRRGKKD 488

Query: 525 ALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAI 584
           A  AIF L ++ GN  R +  G V  L  LL  +    ++ ++LA+LA L+   +G  AI
Sbjct: 489 AATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGG-GMVDEALAILAILSTNQEGKTAI 547

Query: 585 LHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVAL-LVKSPSLMGSLYSLLS 643
               ++ ++++I+ + + R  +E   ++L  LCI    N+  L + +      +L  L  
Sbjct: 548 AEAESIPVLVEIIRTGSPR-NRENAAAILWYLCI---GNIERLNVAREVGADVALKELTE 603

Query: 644 QGSSRASKKASALIRILHE 662
            G+ RA +KA++L+ ++ +
Sbjct: 604 NGTDRAKRKAASLLELIQQ 622

Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes. Undergoes auto-ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	685
359473439	683	PREDICTED: U-box domain-containing prote	0.997	1.0	0.637	0.0
255568748	621	Spotted leaf protein, putative [Ricinus	0.861	0.950	0.671	0.0
255540717	682	Spotted leaf protein, putative [Ricinus	0.995	1.0	0.547	0.0
225457073	679	PREDICTED: U-box domain-containing prote	0.976	0.985	0.551	0.0
224119294	684	predicted protein [Populus trichocarpa]	0.982	0.983	0.538	0.0
357485913	689	U-box domain containing protein [Medicag	0.988	0.982	0.553	0.0
449469687	681	PREDICTED: U-box domain-containing prote	0.981	0.986	0.542	0.0
307135983	671	ubiquitin-protein ligase [Cucumis melo s	0.978	0.998	0.537	0.0
224133504	684	predicted protein [Populus trichocarpa]	0.997	0.998	0.532	0.0
449514494	683	PREDICTED: U-box domain-containing prote	0.995	0.998	0.518	0.0

>gi|359473439|ref|XP_002264637.2| PREDICTED: U-box domain-containing protein 19-like [Vitis vinifera] gi|296086547|emb|CBI32136.3| unnamed protein product [Vitis vinifera]

 Score =  905 bits (2339), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/685 (63%), Positives = 553/685 (80%), Gaps = 2/685 (0%)

Query: 1   MTKKLYGLGRRVLTFPAVHPCESISPSTLLISLIDLAHDICTYKSEFFSTNKRNALKAIR 60
           MT K++   RR+LTFPAVHPC++++P+TLL SL++LA  IC YKS+FF+ NKRN  + IR
Sbjct: 1   MTHKIHASPRRILTFPAVHPCDAVAPATLLASLVNLATTICGYKSKFFAANKRNTRELIR 60

Query: 61  QVHNLLIFLEELRVESADIPGSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSDRV 120
           Q+  LL+FLEE+     D+P S V+S SELH+T Q+I YLLEDC+  GARL MLMKS+RV
Sbjct: 61  QIGILLVFLEEILDRRLDLPASAVLSFSELHVTLQKIVYLLEDCSFGGARLLMLMKSERV 120

Query: 121 SNQLRLFIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAIFETDPDDKRVLNDVIR 180
           SN LR+ IRA  TALDVLPL  IDVS EVKE V+L MRQAR+  FE + DD+R   DV+ 
Sbjct: 121 SNHLRILIRATATALDVLPLELIDVSDEVKESVELTMRQARRVRFEVEADDERASKDVLL 180

Query: 181 ILGRFEDGIRPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEITIEYLNVDKRSELALLSS 240
           IL  FEDG+ PD+ +++RVLDY+GI  WS+CN+EVKFLD+E+ +E+ N++KR E+A LSS
Sbjct: 181 ILDGFEDGVVPDRGDIRRVLDYVGIRSWSECNKEVKFLDTELGLEWSNMEKR-EVAFLSS 239

Query: 241 LMGFLSYCKCIMFDLVDNEASQQVSKKCCNNMLGGLTPDDFTCPISLEIMKDPVTLSTGH 300
           LMGF+SYC+  +FD+VD EA QQ+ K+C +++L  L PDDF CPI+LE+M DPVT+ TGH
Sbjct: 240 LMGFMSYCRFALFDVVDGEAGQQLDKECSSDVLNCLNPDDFRCPITLELMTDPVTIETGH 299

Query: 301 TYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSIAEESGHKNR 360
           TY+R+SILKWFRAGN  CPKTGE++ S +++ N+ L+R+IQ +   NG+ I+E  GH+N 
Sbjct: 300 TYERSSILKWFRAGNPICPKTGEKVVSMDVVPNMALQRLIQQYCSANGIPISE-PGHRNH 358

Query: 361 DITRTVLAGSLAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEV 420
           DITRTVLAGSLAAEGAMK++ANF++ RL  GTS E+NK AYE+RLL K++IFNR CL E 
Sbjct: 359 DITRTVLAGSLAAEGAMKVMANFLAGRLAAGTSGERNKAAYEIRLLAKTNIFNRYCLAEA 418

Query: 421 GCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEAR 480
           G IP LL LLSS DSS+Q NAIAALLNLSK+ KSK+++ E+GGL+ IV +++KGLK+E R
Sbjct: 419 GTIPRLLHLLSSGDSSSQHNAIAALLNLSKYSKSKTIMAENGGLELIVGVLRKGLKIEVR 478

Query: 481 QHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHW 540
           + AAATL+Y+AS+EEYRKLIGE PEA PAL+++++  TDR KKNALVAIFGLL    NHW
Sbjct: 479 ELAAATLYYLASVEEYRKLIGEIPEAFPALLELIKTRTDRGKKNALVAIFGLLTFPDNHW 538

Query: 541 RFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSC 600
           R LA+GAVPLL+NLLTSS+ E+L+T SLAVLATLAEKLDGTI IL  GAL +I++IL+S 
Sbjct: 539 RVLASGAVPLLVNLLTSSEREDLVTASLAVLATLAEKLDGTITILGTGALHLILQILNSS 598

Query: 601 TSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRIL 660
            SR G EYCVSLLLALCINGG  VV++LVK+PSLMGSLYSLL++ +SRASKKA +LIRIL
Sbjct: 599 PSRPGIEYCVSLLLALCINGGKEVVSVLVKNPSLMGSLYSLLTEDNSRASKKARSLIRIL 658

Query: 661 HEFYERHSSGSTTPVLPQDRSVHVW 685
           HEF ER +SG  TP  P++R V VW
Sbjct: 659 HEFCERRASGLVTPAFPEERYVDVW 683

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568748|ref|XP_002525345.1| Spotted leaf protein, putative [Ricinus communis] gi|223535308|gb|EEF36983.1| Spotted leaf protein, putative [Ricinus communis]

 Score =  800 bits (2065), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/593 (67%), Positives = 493/593 (83%), Gaps = 3/593 (0%)

Query: 96  RIRYLLEDCTREGARLWMLMKSDRVSNQLRLFIRAIGTALDVLPLAAIDVSSEVKELVDL 155
           ++R+LLEDCTRE ARL+M+ KSDRV++Q R F+RA+ T LDVLPL  I+V SEV+EL++L
Sbjct: 29  KVRFLLEDCTREDARLFMITKSDRVASQFRAFVRAMATGLDVLPLGLIEVPSEVRELIEL 88

Query: 156 VMRQARKAIFETDPDDKRVLNDVIRILGRFEDGIRPDKSEVKRVLDYLGITKWSQCNQEV 215
           V+ QARKA FE DPDDKRV+ DVI IL +FE+ + PD+S++K+VLDY+G+ +WS CN+EV
Sbjct: 89  VIIQARKARFEVDPDDKRVMEDVISILNQFENDVIPDRSDIKKVLDYVGVQEWSDCNKEV 148

Query: 216 KFLDSEITIEYLNVDKRSELALLSSLMGFLSYCKCIMFDLVDNEAS---QQVSKKCCNNM 272
           K LD+EI  +Y NV+K+ ELALLSSL+GFL Y +C++FD VD + +   QQ+  KC   +
Sbjct: 149 KLLDAEIGFDYANVEKKKELALLSSLIGFLIYARCVLFDSVDTKVTRQQQQLPTKCSKEL 208

Query: 273 LGGLTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLV 332
           L  +  DDF CPISLEIMKDPVT+ TGHTYDR+SILKWFR+GN TCPKTG+RL S EL+ 
Sbjct: 209 LSIINVDDFRCPISLEIMKDPVTIETGHTYDRSSILKWFRSGNPTCPKTGKRLGSIELIP 268

Query: 333 NLVLKRIIQDWSVDNGVSIAEESGHKNRDITRTVLAGSLAAEGAMKLLANFISDRLLEGT 392
           NL+LK +IQ + + NG+  AE +  KNRDITRTVLAGSLAAEGA K++ANF++D+L  G 
Sbjct: 269 NLLLKGLIQQFCIQNGIPTAETTKSKNRDITRTVLAGSLAAEGATKMVANFLADKLENGD 328

Query: 393 SEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC 452
           SE++NK AYE+RLL+K+SIFNRSCLVE G I  LLKLL SKDS +QENAIA LLNLSKH 
Sbjct: 329 SEDRNKAAYEIRLLSKASIFNRSCLVEAGAILFLLKLLLSKDSLSQENAIAGLLNLSKHS 388

Query: 453 KSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVD 512
           KSK ++VE+GGL+ IV+++K GL++EARQHAAATLFY+AS+EEYR LIG + EA+ ALVD
Sbjct: 389 KSKPVIVENGGLELIVNVLKTGLRMEARQHAAATLFYLASVEEYRILIGGSTEAVQALVD 448

Query: 513 MVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLA 572
           + R+G DR++KNALVA++GLLMH GNH R +AAGAVPLLL LLT+ + EEL+TDSLAVLA
Sbjct: 449 LAREGNDRARKNALVALYGLLMHFGNHRRVIAAGAVPLLLTLLTTCEKEELVTDSLAVLA 508

Query: 573 TLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSP 632
           +LAEK DG  AILH G+L  IM +LDS TSRAGKE CV LLLALCINGG +VVA+LVKSP
Sbjct: 509 SLAEKPDGAKAILHSGSLPQIMGVLDSSTSRAGKEQCVCLLLALCINGGTDVVAILVKSP 568

Query: 633 SLMGSLYSLLSQGSSRASKKASALIRILHEFYERHSSGSTTPVLPQDRSVHVW 685
           SLMGSLYS LS+G+SRASKKASALIRILHEFYER SS S TPV+P++R +HVW
Sbjct: 569 SLMGSLYSQLSEGTSRASKKASALIRILHEFYERSSSSSKTPVIPRERFIHVW 621

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540717|ref|XP_002511423.1| Spotted leaf protein, putative [Ricinus communis] gi|223550538|gb|EEF52025.1| Spotted leaf protein, putative [Ricinus communis]

 Score =  748 bits (1931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/685 (54%), Positives = 498/685 (72%), Gaps = 3/685 (0%)

Query: 1   MTKKLYGLGRRVLTFPAVHPCESISPSTLLISLIDLAHDICTYKSEFFSTNKRNALKAIR 60
           M ++L    RR+LTFPAVHP E ISP TLL SLI L+ +IC ++S FF T KRNA +AIR
Sbjct: 1   MIQRLNQNDRRILTFPAVHPSEGISPVTLLDSLITLSQNICNHQSSFFPTQKRNARQAIR 60

Query: 61  QVHNLLIFLEELRVESADIPGSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSDRV 120
           Q+  LLIF EE++     +  S+V+  SE+H  FQ++ +LL+DCT E ARLW+LMKS  V
Sbjct: 61  QIGILLIFFEEIKELRLLMSESIVLCFSEIHHIFQKVHFLLQDCTCEAARLWILMKSQFV 120

Query: 121 SNQLRLFIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAIFETDPDDKRVLNDVIR 180
           + Q  +  RAI  ALDVLPL +IDVS EVKELV+LV RQARKA FE DP+D+     V+ 
Sbjct: 121 ATQFHVLTRAIAAALDVLPLNSIDVSDEVKELVELVARQARKATFELDPEDEWASKQVLL 180

Query: 181 ILGRFEDGIRPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEITIEYLNVDKRSELALLSS 240
           +L  FE GI P+ + +KRVLDYL I  WS C +E+K L+ EI+ +  + D+R E+  LSS
Sbjct: 181 VLNYFEKGIEPELNVMKRVLDYLEIRSWSGCAKEMKLLEDEISFQCSDCDER-EVPFLSS 239

Query: 241 LMGFLSYCKCIMFDLVDNEASQQVSKKCCNNMLGGLTPDDFTCPISLEIMKDPVTLSTGH 300
           L+GF+SYC+ ++F+ VD+  + Q   KC    L  L P+DF CPISLE+M DPVT+STG 
Sbjct: 240 LLGFMSYCRGVIFETVDHRINDQSDIKCNMETLSCLNPEDFRCPISLELMTDPVTVSTGQ 299

Query: 301 TYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSIAEESGHKNR 360
           TYDR+SI KW +AGN TCPKTGE+L+S EL+ N  L+++IQ +  DNG+S+++ SG   R
Sbjct: 300 TYDRSSIEKWLKAGNMTCPKTGEKLKSSELVPNATLRKLIQKFCADNGISLSK-SGSITR 358

Query: 361 DITRTVLAGSLAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEV 420
           DITRT++ GSLAA  A+KLL+ F++ RL+ G +E+KNK AYE+RLLTK +I+NR CL+E 
Sbjct: 359 DITRTIVPGSLAAAEAIKLLSRFLARRLVFGPNEKKNKAAYEIRLLTKLNIYNRVCLIEA 418

Query: 421 GCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEAR 480
           G +  L+ LLSS D S+QENAI ALL LSKH   K +++ESGGL  I+ ++K GL  EA+
Sbjct: 419 GTVLPLINLLSSSDRSSQENAIGALLKLSKHTSGKVVIIESGGLKPILAVLKSGLSFEAK 478

Query: 481 QHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHW 540
           Q AAAT+FY+AS++ +RKLIGE PE +PALV++++      KKNA+ AIF LL++ GNH 
Sbjct: 479 QTAAATIFYLASVKRHRKLIGEMPETVPALVELIKHRPTCGKKNAVAAIFALLLNPGNHQ 538

Query: 541 RFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSC 600
           + LA+G VPLL++ + SSD +ELI DSLAVLA LAE +DG +AIL   AL +I ++L S 
Sbjct: 539 KVLASGTVPLLVDTICSSDKDELIADSLAVLAALAENVDGALAILKTSALSLITRLLQSF 598

Query: 601 TSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRIL 660
            SRAGKEYCVS+LL+L  +GGA V+ +L K P LM SLYSLL+ G+S+A  KA +L+RI+
Sbjct: 599 PSRAGKEYCVSVLLSLSKHGGAQVIEVLAKDPVLMSSLYSLLTDGTSQAGSKARSLMRIM 658

Query: 661 HEFYERHSSGSTTPVLPQDRSVHVW 685
           H+F E  SSGS     P +R VHVW
Sbjct: 659 HKFRETSSSGSVAAA-PCERPVHVW 682

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457073|ref|XP_002279989.1| PREDICTED: U-box domain-containing protein 19-like [Vitis vinifera]

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/675 (55%), Positives = 499/675 (73%), Gaps = 6/675 (0%)

Query: 10  RRVLTFPAVHPCESISPSTLLISLIDLAHDICTYKSEFFSTNKRNALKAIRQVHNLLIFL 69
           RR+L+FPAVHPCESISP TLL SLI L+  I  Y+S+ F T KRNA + +RQ+  LLIF 
Sbjct: 10  RRILSFPAVHPCESISPVTLLGSLIALSTSILNYQSKSFPTQKRNARETLRQIGILLIFF 69

Query: 70  EELRVESADIPGSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSDRVSNQLRLFIR 129
           EE++   + +P S+V+  SELHL FQ+I++LLEDC+REGARLW+LMKS  V+ Q R+ IR
Sbjct: 70  EEIQDRRSVLPDSVVLCFSELHLAFQKIQFLLEDCSREGARLWILMKSQFVATQFRVLIR 129

Query: 130 AIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAIFETDPDDKRVLNDVIRILGRFEDGI 189
           A  TAL+VLPL  ID++SEVKELV+LV +QARKA F+ D +D+    DVI IL +FE  I
Sbjct: 130 AFATALEVLPLNCIDLTSEVKELVELVAKQARKARFDLDANDECAAKDVIWILNQFEKRI 189

Query: 190 RPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEITIEYLNVDKRSELALLSSLMGFLSYCK 249
            PD S VKRVLD+L I  WS+CN+E++F++ E+++E    D+R E+ LL SLMG +SYC+
Sbjct: 190 EPDMSVVKRVLDHLEIRSWSECNKEIRFME-ELSLE---CDER-EVTLLKSLMGLMSYCR 244

Query: 250 CIMFDLVDNEASQQVSKKCCNNMLGGLTPDDFTCPISLEIMKDPVTLSTGHTYDRASILK 309
            +MF+ +++  + Q   +C   ML  L P+DF CPISLE+M DPVT+STG TYDR+SI K
Sbjct: 245 GVMFEEIESSGTDQTEGRCSVEMLSCLNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQK 304

Query: 310 WFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSIAEESGHKNRDITRTVLAG 369
           W RAGN  CPKTGE+L +KEL+ N  L+++IQ +  D+GVS+A+ +  +N +  RT+   
Sbjct: 305 WLRAGNIICPKTGEKLINKELVPNSALRKLIQQFCEDHGVSLAK-TETQNSNAARTIAVN 363

Query: 370 SLAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKL 429
           S AA  A + L+ F++ RL+ GT E+KNK AYE+RLL KSS+FNR CL+E G +P LL L
Sbjct: 364 SPAAAEATRFLSKFLARRLVSGTGEQKNKAAYEIRLLAKSSVFNRCCLIEAGTVPPLLNL 423

Query: 430 LSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFY 489
           LSS D+ TQENAIAALL LSKH K K ++++SGGL  I+ ++K G ++E+RQ AAATLFY
Sbjct: 424 LSSTDAPTQENAIAALLKLSKHSKGKKVIMDSGGLKLILKVLKVGPRLESRQIAAATLFY 483

Query: 490 IASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVP 549
           +AS+++YR LIGE PEAIP+LV++++ GT   K +A+VAIFGLL+   N  R LAAG VP
Sbjct: 484 LASVDKYRSLIGETPEAIPSLVELIKTGTTIGKMHAVVAIFGLLLCRENCPRVLAAGTVP 543

Query: 550 LLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYC 609
           LL++LL SS  E+L T+SLA LA L+E +DG++AIL    L +I KIL S  SR GKEYC
Sbjct: 544 LLVHLLASSVKEDLATESLAALAKLSEHIDGSLAILRASGLPLITKILQSSPSRTGKEYC 603

Query: 610 VSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYERHSS 669
           VS+LL+LCING   V   L K P+LM SLYSL+++G+S  SKKA +L++I+H+F E  SS
Sbjct: 604 VSILLSLCINGSIEVTVDLAKDPTLMTSLYSLVTEGTSHGSKKACSLLKIIHKFLETDSS 663

Query: 670 GSTTPVLPQDRSVHV 684
           G  +  +PQ+R + V
Sbjct: 664 GLRSSQVPQERFLRV 678

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119294|ref|XP_002318035.1| predicted protein [Populus trichocarpa] gi|224144077|ref|XP_002336107.1| predicted protein [Populus trichocarpa] gi|222858708|gb|EEE96255.1| predicted protein [Populus trichocarpa] gi|222872788|gb|EEF09919.1| predicted protein [Populus trichocarpa]

 Score =  732 bits (1889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/676 (53%), Positives = 487/676 (72%), Gaps = 3/676 (0%)

Query: 10  RRVLTFPAVHPCESISPSTLLISLIDLAHDICTYKSEFFSTNKRNALKAIRQVHNLLIFL 69
           RR+LTFPAVHPCE ISP+TLL SLIDL+ +IC Y+S+ F+T ++NA + IRQ+  LL+F 
Sbjct: 10  RRILTFPAVHPCEGISPATLLSSLIDLSQNICNYQSKLFATQRKNARETIRQIGLLLLFF 69

Query: 70  EELRVESADIPGSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSDRVSNQLRLFIR 129
           EE+R     +  S ++  SELH  FQ++++LLEDCTREGARLW+LMK   V+   R  IR
Sbjct: 70  EEIRDRGLVLSDSALLCFSELHHAFQKVQFLLEDCTREGARLWILMKCQLVATHFRAPIR 129

Query: 130 AIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAIFETDPDDKRVLNDVIRILGRFEDGI 189
           AI TALDVLPL  IDV  EVKELV L+ +QARK   E DP D+     V  +L  F+ G+
Sbjct: 130 AIATALDVLPLNLIDVGGEVKELVGLIAKQARKGKLEPDPVDEWASKQVFSVLDHFQMGV 189

Query: 190 RPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEITIEYLNVDKRSELALLSSLMGFLSYCK 249
            PD S +KRVL+ L I  W+ CN+E+KFL+ +I  +  + D+R E+  LSSL+G +SYC+
Sbjct: 190 EPDSSLMKRVLENLEIRNWNDCNKEIKFLEEQIGYQCSDCDER-EVPFLSSLLGLMSYCR 248

Query: 250 CIMFDLVDNEASQQVSKKCCNNMLGGLTPDDFTCPISLEIMKDPVTLSTGHTYDRASILK 309
            ++F+  +N  + Q   +     L  +  +DF CPISLE+M DPVT+STG TYDR+SI +
Sbjct: 249 GVIFETWNNRNNDQSDARHSIEALSCINREDFRCPISLELMTDPVTVSTGQTYDRSSIER 308

Query: 310 WFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSIAEESGHKNRDITRTVLAG 369
           W +AGN TCPKTGERL S EL+ N  L+++IQ +  + G+  A +SG ++RD+ RT+  G
Sbjct: 309 WLKAGNMTCPKTGERLTSTELVPNTTLRKLIQQFCAEVGIC-ASKSGSRSRDVARTISPG 367

Query: 370 SLAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKL 429
           S AA  AMK L+ F++ RL+ G+SE+K K AYE+RLL KS+IFNRSCL+E G I  L+ L
Sbjct: 368 SPAAAEAMKFLSGFLARRLVSGSSEQKTKAAYEIRLLAKSNIFNRSCLIEAGTILPLINL 427

Query: 430 LSSK-DSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLF 488
           LSS  D  TQE A++ALL LSKH   K  ++ESGGL  I+ ++K+GL +EA+Q AAAT+F
Sbjct: 428 LSSSLDHYTQETALSALLKLSKHTCGKKEIIESGGLKPILAVLKRGLSLEAKQMAAATIF 487

Query: 489 YIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAV 548
           Y+AS++ Y KLIGE PE +PALV++++DGT   KKN +VAIFGLL+H  NH R LA+G+V
Sbjct: 488 YLASVKSYGKLIGETPEVVPALVELIKDGTTCGKKNGVVAIFGLLLHPANHQRVLASGSV 547

Query: 549 PLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEY 608
           PLL+++L+SS++ ELI DSLAVLA +AE +DGT+AIL   AL  I +IL S  SR  +EY
Sbjct: 548 PLLMDMLSSSNNIELIADSLAVLAIIAESVDGTLAILQTSALSTIPRILRSLPSRTAREY 607

Query: 609 CVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYERHS 668
           CV++LL+LC NGGA  +A+L K  +LM SLYSLL+ G+S  S KA ALIRILH+F+E  S
Sbjct: 608 CVTVLLSLCKNGGAEAIAILAKDHNLMSSLYSLLTDGTSHGSSKARALIRILHKFHETSS 667

Query: 669 SGSTTPVLPQDRSVHV 684
           SG T   +P +R VHV
Sbjct: 668 SGMTASAVPCERPVHV 683

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485913|ref|XP_003613244.1| U-box domain containing protein [Medicago truncatula] gi|355514579|gb|AES96202.1| U-box domain containing protein [Medicago truncatula]

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/685 (55%), Positives = 507/685 (74%), Gaps = 8/685 (1%)

Query: 7   GLGRRVLTFPAVHPCESISPSTLLISLIDLAHDICTYKSEFFSTNKRNALKAIRQVHNLL 66
           G GRR+L FPAVHPC +I+ STLL SLI+L+  I  ++ +FFS+NKRNA KAIR +  L 
Sbjct: 7   GSGRRILNFPAVHPCINIASSTLLSSLINLSDKISNFQHKFFSSNKRNARKAIRLIGLLQ 66

Query: 67  IFLEELRVESADIPGSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSDRVSNQLRL 126
            FL E+    +++P  + +  SELH+ FQ++ +L+ED T EG RL+MLM+S RV+   R+
Sbjct: 67  PFLHEILENHSNLPAPVTLCFSELHVIFQKLFFLMEDLTCEGGRLFMLMESGRVATMFRV 126

Query: 127 FIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAIFETDPDDKRVLNDVIRILGRFE 186
             R++ +ALDVL   +++V  E KE V LVM+Q R+  F+ + DD+ V+  V ++L  FE
Sbjct: 127 LFRSVASALDVLDFDSVEVGLEGKEEVLLVMKQVREGRFKFEVDDEEVVTCVKKVLNLFE 186

Query: 187 DGIRPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEITIEYLNVDKRSELALLSSLMGFLS 246
             + P K ++KRV+DY+G+ +W++ N+EVKFLD EI  E+LN +++ ++  LSSLMGF+ 
Sbjct: 187 KRVAPKKIDLKRVVDYIGVCEWNEINKEVKFLDGEIGFEWLN-EEKEKVGFLSSLMGFMC 245

Query: 247 YCKCIMFDLVDNEASQQVSK----KCCNNMLGGLTPDDFTCPISLEIMKDPVTLSTGHTY 302
           YC+C+M ++VD E  +   K    +    +L  L  DDF CPISLE+M DPVT+ TGHTY
Sbjct: 246 YCRCVMIEIVDCEEGKSGKKFDARRESEMILSCLNSDDFRCPISLELMSDPVTIETGHTY 305

Query: 303 DRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSIAEESGHKNRDI 362
           DR+SILKWFR+GNSTCPKTG+ L S EL+ NLVL+R+IQ +   NG+  A+ S  ++RDI
Sbjct: 306 DRSSILKWFRSGNSTCPKTGKSLGSIELVPNLVLRRLIQQYCNVNGIPFAD-SSRRSRDI 364

Query: 363 TRTVLAGSLAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGC 422
           TRTV  GS+AAEGAM LLA F+   L  G  E+KN  A+EVR+LTK+SIF+RSC VE G 
Sbjct: 365 TRTVEPGSVAAEGAMTLLAGFLCRSLDNGNVEQKNHAAFEVRVLTKTSIFSRSCFVESGL 424

Query: 423 IPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQH 482
           +P LL LL+S DSS QENAIAALLNLSK+ KS+S +VE+ GL+ IV ++ KG+ +EA+QH
Sbjct: 425 VPLLLLLLASSDSSAQENAIAALLNLSKYIKSRSEMVENWGLEMIVGVLNKGINIEAKQH 484

Query: 483 AAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRF 542
           AAA LFY+AS  E+  LIGE PEAIP+L+ +++D   RS KN LVAIFGLL +  NH R 
Sbjct: 485 AAAVLFYLASNPEHANLIGEEPEAIPSLISLIKDDNKRSVKNGLVAIFGLLKNHENHKRI 544

Query: 543 LAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKIL--DSC 600
           LAA A+PLL+N+L +S+ E+L+TDSLA+LATLAEK DGT  IL  GAL + ++++   S 
Sbjct: 545 LAAQAIPLLVNILKASEKEDLVTDSLAILATLAEKSDGTSEILRFGALHVAVEVMSSSST 604

Query: 601 TSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRIL 660
           TSR GKE+CVSLLL+L INGG NV+A LVKS SLM SLYS LS+G+SRASKKAS+LIR+L
Sbjct: 605 TSRLGKEHCVSLLLSLSINGGENVIAHLVKSSSLMESLYSQLSEGTSRASKKASSLIRVL 664

Query: 661 HEFYERHSSGSTTPVLPQDRSVHVW 685
           H+FYER SS   T V+P++R +HVW
Sbjct: 665 HDFYERRSSNYRTSVIPRERFIHVW 689

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469687|ref|XP_004152550.1| PREDICTED: U-box domain-containing protein 19-like [Cucumis sativus] gi|449487863|ref|XP_004157838.1| PREDICTED: U-box domain-containing protein 19-like [Cucumis sativus]

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/676 (54%), Positives = 493/676 (72%), Gaps = 4/676 (0%)

Query: 10  RRVLTFPAVHPCESISPSTLLISLIDLAHDICTYKSEFFSTNKRNALKAIRQVHNLLIFL 69
           RR+LTFPAVHPC +ISP+TLL SLIDL   IC ++++ F T KRNA + IRQ+  LLIF 
Sbjct: 10  RRILTFPAVHPCSAISPATLLASLIDLCRQICNHQTKSFVTQKRNARETIRQIGILLIFF 69

Query: 70  EELRVESADIPGSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSDRVSNQLRLFIR 129
           EELR  S+++P S+V+  SELHLTFQ+I +L EDC+R  A++WMLMKS  V+ Q  + IR
Sbjct: 70  EELRDMSSNLPDSVVLCFSELHLTFQKILFLFEDCSRSNAKIWMLMKSQFVATQFWVLIR 129

Query: 130 AIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAIFETDPDDKRVLNDVIRILGRFEDGI 189
           A+ TALDVLPL+ ID S EVKELV+LV +QAR A F  D DD+  +  +  IL +F+ GI
Sbjct: 130 ALATALDVLPLSRIDTSDEVKELVELVAKQARIAKFGLDKDDELTVKRLQSILLQFDKGI 189

Query: 190 RPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEITIEYLNVDKRSELALLSSLMGFLSYCK 249
            PD + +KRVL+YL I +WS CN+E+KFL  EI  +Y ++ +R ++ +LSSL+GF+SY +
Sbjct: 190 EPDLTAIKRVLNYLEIRRWSDCNKEIKFLQEEIDFQYSDLKER-DVQILSSLVGFMSYSR 248

Query: 250 CIMFDLVDNEASQQVSKKCCNNMLGGLTPDDFTCPISLEIMKDPVTLSTGHTYDRASILK 309
             +F+ +D     Q   KC   +L  L PDDF CPISLE+M DPVT+STG TYDRASI K
Sbjct: 249 VTLFEALDFRDKNQAEFKCNPEILSCLNPDDFRCPISLELMIDPVTVSTGQTYDRASIQK 308

Query: 310 WFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSIAEESGHKNRDITRTVLAG 369
           W  AGN  CPKTGERL S EL+ N  +K++I  +  DNG+S+A+    ++ DITRT++ G
Sbjct: 309 WLSAGNFICPKTGERLTSLELVPNSSVKKLINQFCADNGISLAK-FNVRSHDITRTIIPG 367

Query: 370 SLAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKL 429
           SLAA  A+K  + F+  RL+ GTS EKNK AYE+RLL KS+IFNRSCL++ G IP LL L
Sbjct: 368 SLAAAEAIKFTSEFLLRRLVFGTSTEKNKAAYEIRLLAKSNIFNRSCLIKAGAIPPLLNL 427

Query: 430 LSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFY 489
           LSS D STQENAIAA+L LSKH   K +V+E+GGL  I+ ++K G  +E+RQ AAATLFY
Sbjct: 428 LSSFDKSTQENAIAAILKLSKHSTGKILVMENGGLPPILSVLKSGFCLESRQLAAATLFY 487

Query: 490 IASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVP 549
           ++S++EYRKLIGE P+AI  L+D+V++GT   KKNA+VAIFGLL+   N+   L +GAVP
Sbjct: 488 LSSVKEYRKLIGEIPDAIAGLIDLVKEGTTCGKKNAVVAIFGLLLCPKNNKTVLNSGAVP 547

Query: 550 LLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYC 609
           +LL+++ +S++ ELI+DSLAV+A LAE  +GT AIL   AL +++K L+S ++ AGKEYC
Sbjct: 548 ILLDIIATSNNSELISDSLAVIAALAESTEGTNAILQASALPLLIKTLNSESTLAGKEYC 607

Query: 610 VSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYERHSS 669
           VS L +LC +GG  VVA L    ++ GSLYS++++G++ A KKA  L++ILH+F E   +
Sbjct: 608 VSTLRSLCSHGGEEVVAALADDRTIAGSLYSVVTEGNAAAGKKARWLLKILHKFRENDVA 667

Query: 670 GSTTPVLPQDRSVHVW 685
            +T     Q+RSV VW
Sbjct: 668 VNTAA--DQERSVDVW 681

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307135983|gb|ADN33842.1| ubiquitin-protein ligase [Cucumis melo subsp. melo]

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/674 (53%), Positives = 507/674 (75%), Gaps = 4/674 (0%)

Query: 13  LTFPAVHPCESISPSTLLISLIDLAHDICTYKSEFFSTNKRNALKAIRQVHNLLIFLEEL 72
           ++ PA+ PCE  +P TLL SLI+L+  IC+Y+ +FF +NK+NA+K IRQ+  LL F E+L
Sbjct: 1   MSSPAIRPCECTAPGTLLTSLINLSRTICSYRHKFFGSNKQNAIKLIRQIGILLAFFEDL 60

Query: 73  RVESAD-IPGSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSDRVSNQLRLFIRAI 131
           +  ++D    S+V+ +SELHL FQ+I YLLEDC  EGARL+MLMKS+ ++N+ R+ IR++
Sbjct: 61  QDRNSDEFSDSIVLVISELHLIFQKILYLLEDCALEGARLFMLMKSEHIANRFRVLIRSV 120

Query: 132 GTALDVLPLAAIDVSSEVKELVDLVMRQARKAIFETDPDDKRVLNDVIRILGRFEDGIRP 191
             AL++LPL ++DVS +V + V+LV++QAR+  F  D +D+ ++N+V  IL  F++ I P
Sbjct: 121 ALALEILPLNSMDVSVDVVDYVELVIKQARREKFGNDGEDEEIVNEVKSILSLFDNRIVP 180

Query: 192 DKSEVKRVLDYLGITKWSQCNQEVKFLDSEITIEYLNVDKRSELALLSSLMGFLSYCKCI 251
           D S +KRVLDY+G+  WS CN+EVKFLDSEI  E+ N DK +E++ LS+ MG ++YC+C+
Sbjct: 181 DNSRIKRVLDYIGVKSWSLCNKEVKFLDSEIEFEWSNQDK-TEVSFLSNSMGLMNYCRCM 239

Query: 252 MFDLVDNEASQQVSKKCCNNMLGGLTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWF 311
           +FD+VD+EA +QV + C    +  L PDDF CPISLE M DPVTL TG TY+R+SI KWF
Sbjct: 240 LFDVVDSEADRQVDE-CRIETMDCLNPDDFRCPISLEFMFDPVTLVTGQTYERSSIQKWF 298

Query: 312 RAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSIAEESGHKNRDITRTVLAGSL 371
           RAGN TCP TGERL+++EL+ NL L+RII+ +   N +   E S  K  D+TRT+  GS 
Sbjct: 299 RAGNLTCPNTGERLKNRELVPNLALRRIIRQYCSKNSIPFPESSKQK-PDLTRTIAPGSP 357

Query: 372 AAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLS 431
                +  LANF++D L  GT EEKN+ A+E++ L+K+S+F R CLVE+  IP+LLKLL 
Sbjct: 358 IVRNIIMFLANFLADFLESGTLEEKNRAAFEIKFLSKASLFYRCCLVEIDLIPNLLKLLR 417

Query: 432 SKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIA 491
           SKD+ TQ+NAIAA+LNLSKH KSK ++ E+ GL+ IV ++  G KVE+RQ AA TLFY+A
Sbjct: 418 SKDNLTQKNAIAAVLNLSKHSKSKKVIAENSGLEAIVHVLMTGYKVESRQFAAGTLFYMA 477

Query: 492 SIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLL 551
           SIE+YRKLI E P  +P L+++++D  DRSKKNA+VAI+GLLMHSGNH + L++GAVPLL
Sbjct: 478 SIEKYRKLIAEIPNTLPGLLNLLKDNADRSKKNAMVAIYGLLMHSGNHRKVLSSGAVPLL 537

Query: 552 LNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVS 611
           +NL+ + +SE LI+DS+ +LATLA K +GT AIL  GAL+ IM+ L+SC+S  G+EY VS
Sbjct: 538 VNLIETCESEILISDSMEILATLAGKPEGTAAILRSGALNSIMEFLNSCSSITGREYSVS 597

Query: 612 LLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYERHSSGS 671
           LL+ALC+NGG+ V+ ++ K+ +++ S+YS++S+G+SR  KKA++L+R+LHEF E  SS S
Sbjct: 598 LLVALCLNGGSEVIGVIAKNQTVISSVYSVVSEGTSRGKKKANSLMRVLHEFTELESSNS 657

Query: 672 TTPVLPQDRSVHVW 685
            +  L QDR V  W
Sbjct: 658 DSSHLLQDRIVQAW 671

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133504|ref|XP_002321584.1| predicted protein [Populus trichocarpa] gi|222868580|gb|EEF05711.1| predicted protein [Populus trichocarpa]

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/686 (53%), Positives = 491/686 (71%), Gaps = 3/686 (0%)

Query: 1   MTKKLYGLGRRVLTFPAVHPCESISPSTLLISLIDLAHDICTYKSEFFSTNKRNALKAIR 60
           M +      RR+LTFPAVHPCE+ISP+TLL SLI+L+ +IC Y+S+ F+T ++NA + IR
Sbjct: 1   MIQNFDQTDRRILTFPAVHPCEAISPATLLNSLINLSQNICNYQSKLFATQRKNARQTIR 60

Query: 61  QVHNLLIFLEELRVESADIPGSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSDRV 120
           Q+  LL+F EE R     +  S+V+  SELHL FQ++++LLEDCTREGA+LW+L+K   V
Sbjct: 61  QIGLLLLFFEETRDRRLALSDSVVLCFSELHLAFQKVQFLLEDCTREGAKLWILIKFQIV 120

Query: 121 SNQLRLFIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAIFETDPDDKRVLNDVIR 180
           S Q R  IRAI TALDVLPL+ IDV  EVKELV+LV +QAR A  E DP+D+  L  V  
Sbjct: 121 STQFRALIRAIATALDVLPLSLIDVGVEVKELVELVGKQARNAKVEVDPEDEWALKQVFS 180

Query: 181 ILGRFEDGIRPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEITIEYLNVDKRSELALLSS 240
           IL  FE G  PD S +KRVLD+L I  W+ CN+E+KFL+ +I  +  +  +R E+  LSS
Sbjct: 181 ILDHFEKGTEPDSSFMKRVLDHLEIRNWNDCNKEIKFLEEQIGFQCSDCKER-EVPFLSS 239

Query: 241 LMGFLSYCKCIMFDLVDNEASQQVSKKCCNNMLGGLTPDDFTCPISLEIMKDPVTLSTGH 300
           L+G +SYC+ ++F+  ++  + +   +        +  +DF CPISLE+M DPVT+STG 
Sbjct: 240 LLGLMSYCRGVIFETWNHRNNDKSDARHGIEAPTCINTEDFRCPISLELMTDPVTVSTGQ 299

Query: 301 TYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSIAEESGHKNR 360
           TYDR+SI +W +AGN TCPKTGERL S EL+ N  L+++IQ +  D G+  A  SG ++R
Sbjct: 300 TYDRSSIQRWLKAGNMTCPKTGERLTSTELVPNSTLRKLIQQFCTDVGIC-ASNSGSQSR 358

Query: 361 DITRTVLAGSLAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEV 420
           DI RT+  GS AA   MK L+ F++ RL+ G+ E+K K AYE+RLL KS+IFNRSCL+E 
Sbjct: 359 DIARTISPGSPAAAEEMKFLSRFLARRLVFGSREQKTKAAYEIRLLAKSNIFNRSCLIEA 418

Query: 421 GCIPSLLKLLSSK-DSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEA 479
           G I  L+ LLSS  +   QE AI+ALL LSKH   K  ++ESGGL  I+ ++++GL +EA
Sbjct: 419 GTILPLINLLSSSCEHYAQEIAISALLKLSKHTCGKKEIIESGGLQPILAVLRRGLSLEA 478

Query: 480 RQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNH 539
           +Q AAAT+FY+AS++ YRKLIGE PE +P LV++++DGT   KKN +VAIFGLL+H GNH
Sbjct: 479 KQMAAATIFYLASVKAYRKLIGETPEVVPTLVELIKDGTTCGKKNGVVAIFGLLLHPGNH 538

Query: 540 WRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDS 599
            R LA+G +PLL+++L+SSD++ELI DS+AVLA +AE +DGT+AIL   AL  I +IL S
Sbjct: 539 QRVLASGTIPLLMDILSSSDNDELIADSVAVLAAIAESVDGTLAILQTSALSTIPRILQS 598

Query: 600 CTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRI 659
             SRA +EYCV++LL+LC NGGA  +A+L K  SLM SLYSLL+ G+   S KA ALI+ 
Sbjct: 599 SPSRAAREYCVTVLLSLCKNGGAEAIAILAKDHSLMSSLYSLLTDGTPHGSSKARALIKT 658

Query: 660 LHEFYERHSSGSTTPVLPQDRSVHVW 685
           LH+F+E  SSG    V+P +R VHVW
Sbjct: 659 LHKFHETSSSGRIASVVPCERPVHVW 684

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449514494|ref|XP_004164396.1| PREDICTED: U-box domain-containing protein 19-like [Cucumis sativus]

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/686 (51%), Positives = 506/686 (73%), Gaps = 4/686 (0%)

Query: 1   MTKKLYGLGRRVLTFPAVHPCESISPSTLLISLIDLAHDICTYKSEFFSTNKRNALKAIR 60
           M  +     RR+++ PA+ PCE   P+TLL SLI+L   IC+Y+ +FF +NK+NA+K+IR
Sbjct: 1   MIPRSKDFQRRIMSSPAIRPCECTPPATLLTSLINLTRTICSYRYKFFGSNKKNAIKSIR 60

Query: 61  QVHNLLIFLEELRVESAD-IPGSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSDR 119
           Q+  LL F EEL+  S+D     +V+ +SELHL FQ+I YLLEDC  EGARL+MLMKS+ 
Sbjct: 61  QIGILLAFFEELQDRSSDEFSDLIVLVMSELHLIFQKILYLLEDCALEGARLFMLMKSEL 120

Query: 120 VSNQLRLFIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAIFETDPDDKRVLNDVI 179
           ++N+ RL +R++  AL++ PL ++ VS +V E V+LV++Q R+A F  + +D+ +LN+V 
Sbjct: 121 IANRFRLLVRSVALALEIFPLDSMGVSVDVVEYVELVIKQTRRAKFGIEGEDEEILNEVK 180

Query: 180 RILGRFEDGIRPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEITIEYLNVDKRSELALLS 239
            IL  F++ I P+ S++K VLDY+G+  WS CN+EVKFLDSEI  E+ N D+ +E++ LS
Sbjct: 181 SILTLFDNRIVPNSSKIKCVLDYIGVKSWSLCNKEVKFLDSEIEFEWSNQDE-TEVSFLS 239

Query: 240 SLMGFLSYCKCIMFDLVDNEASQQVSKKCCNNMLGGLTPDDFTCPISLEIMKDPVTLSTG 299
           +LMG ++YC+C++FD+VD+EA   V +    NM   L PDDF CPISL+ M DPVTL TG
Sbjct: 240 NLMGLMNYCRCMLFDVVDSEADGHVDECRIENM-ECLNPDDFRCPISLDFMFDPVTLVTG 298

Query: 300 HTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSIAEESGHKN 359
            TY+R+SI KWFR  N TCP TGERL+++E++ NL L+RII+ +   N +   E S  K 
Sbjct: 299 QTYERSSIQKWFRTANLTCPNTGERLKNREVVPNLALRRIIRQYCSKNSIPFPESSKQKP 358

Query: 360 RDITRTVLAGSLAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVE 419
            D+TRT+  GS   +  +  LA+F+++ L  GT EEKN+ A+E++LL+K+S+F R CLV+
Sbjct: 359 -DLTRTIAPGSPIVKNIIIFLADFLANFLESGTLEEKNRAAFEIKLLSKASLFYRCCLVK 417

Query: 420 VGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEA 479
           +G IP+LL+LL S+D+ TQ+NAIAA+LNLSKH KSK ++ E+ GL+ IV ++  G KVE+
Sbjct: 418 IGLIPNLLQLLRSEDNLTQKNAIAAVLNLSKHSKSKKIIAENRGLEAIVHVLMTGYKVES 477

Query: 480 RQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNH 539
           RQ AA TLFY+ASIEEYRKLI E P  +P L+++++D  DRSKKNA+VAI+GLLMHS NH
Sbjct: 478 RQFAAGTLFYMASIEEYRKLIAEIPNTLPGLLNLLKDNADRSKKNAMVAIYGLLMHSDNH 537

Query: 540 WRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDS 599
            + L++GAVPLL+NL+ + +SE LI+DS+ +LA+LA K +GT AIL  GAL+ IMK L+S
Sbjct: 538 RKVLSSGAVPLLVNLIETCESEILISDSMEILASLAGKPEGTAAILRSGALNSIMKFLNS 597

Query: 600 CTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRI 659
           C+S  G+EY VSLL+ALC+NGG+ V+ ++ K+ +++ S+YS++S+G+SR  KKA++LIR+
Sbjct: 598 CSSITGREYSVSLLVALCLNGGSEVIGVIAKNQTVISSVYSVVSEGTSRGKKKANSLIRV 657

Query: 660 LHEFYERHSSGSTTPVLPQDRSVHVW 685
           LHEF E  SS S      QDR V  W
Sbjct: 658 LHEFTELESSNSEATHRLQDRIVQAW 683

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	685
TAIR|locus:2194564	697	PUB18 "plant U-box 18" [Arabid	0.985	0.968	0.441	3e-149
TAIR|locus:2195563	686	PUB19 "plant U-box 19" [Arabid	0.973	0.972	0.449	1.5e-147
TAIR|locus:2013688	729	PUB17 "plant U-box 17" [Arabid	0.845	0.794	0.306	1.4e-73
TAIR|locus:2181077	674	SAUR21 "SMALL AUXIN UP RNA 21"	0.889	0.903	0.281	1.5e-67
UNIPROTKB|Q6EUK7	728	PUB4 "U-box domain-containing	0.902	0.848	0.296	5.8e-66
UNIPROTKB|Q0IMG9	694	SPL11 "E3 ubiquitin-protein li	0.823	0.812	0.314	1.2e-63
TAIR|locus:2082682	632	PUB14 "plant U-box 14" [Arabid	0.848	0.919	0.299	2.6e-63
UNIPROTKB|Q5VRH9	611	PUB12 "U-box domain-containing	0.794	0.890	0.306	4.8e-62
TAIR|locus:2075140	660	PUB13 "plant U-box 13" [Arabid	0.811	0.842	0.304	3.1e-60
TAIR|locus:2013990	628	AT1G71020 [Arabidopsis thalian	0.547	0.597	0.328	4.2e-55

TAIR|locus:2194564 PUB18 "plant U-box 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 1457 (517.9 bits), Expect = 3.0e-149, P = 3.0e-149
 Identities = 307/695 (44%), Positives = 440/695 (63%)

Query:     7 GLGRRVLTFPAVHPCEXXXXXXXXXXXXXXAHDICTYKSEFFSTNKRNALKAIRQVHNLL 66
             G GRR+LTFP V P E              A DI T+KS+ FSTNK++  + +R++ NLL
Sbjct:     7 GSGRRILTFPTVEPSESISIVTLLDSLIQLAGDILTFKSKHFSTNKQSFRETLRRIQNLL 66

Query:    67 IFLEELRVESADI-----PGSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSDRVS 121
             +  EE+R+   +        +   SL E+H+ FQ++++LLEDCTR+GARL M+M SD+VS
Sbjct:    67 VVFEEIRIRIRNSRRYFHDSAAASSLKEIHVGFQKLKFLLEDCTRDGARLCMMMNSDQVS 126

Query:   122 NQLRLFIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAIFETDPDDKRVLNDVIRI 181
             + LR+  R+I T+L   P+A++D+++EV EL+DLV+RQARK   + + +DKR ++ + RI
Sbjct:   127 DHLRVLTRSISTSLSAFPVASVDLTTEVNELIDLVVRQARKYGVQPETNDKRAVSSINRI 186

Query:   182 LGRFEDGIRPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEITIEYLNVDKRS---ELALL 238
             L  F + + PD  E+ R+LD++GI KW  C +E+ FL  EI  E L+  K+    ++ LL
Sbjct:   187 LALFVNRVVPDPDEINRILDHVGIRKWGDCVKEINFLGEEIDAERLDEKKKKSSDQVELL 246

Query:   239 SSLMGFLSYCKCIMFDLV---DNEASQQVSKKCCNNMLGGLTPDDFTCPISLEIMKDPVT 295
             SSLMGF+ YC+CI+   +   D+    +   K  ++++ GL  +D  CPISLEIM DPV 
Sbjct:   247 SSLMGFICYCRCIILGRIERDDHHNHHEDGIKKDHDLIRGLKVEDLLCPISLEIMTDPVV 306

Query:   296 LSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSIAEES 355
             + TGHTYDR+SI KWF +GN TCP TG+ L S EL+ N+ ++++I+     NG+ +A  S
Sbjct:   307 IETGHTYDRSSITKWFGSGNITCPITGKILTSTELVDNVSVRQVIRKHCKTNGIVLAGIS 366

Query:   356 GHKNRDITRTVLAGSLAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRS 415
               + R     V+  SLAA+GA KL+A F++  L+ G  E   +   E+R+ TK+S FNRS
Sbjct:   367 --RRRKSHDDVVPESLAAKGAGKLIAKFLTSELINGGEEMIYRAVREIRVQTKTSSFNRS 424

Query:   416 CLVEVGCIPXXXXXXXXXXXXTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGL 475
             CLV+ G +              QENA+A +LNLSKH   KS +   G L  +V+++ +G 
Sbjct:   425 CLVKAGAVTPLLKLLSSVDIRIQENAMAGILNLSKHVTGKSKIAGEG-LKILVEILNEGA 483

Query:   476 KVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR--DGTDRSKKNALVAIFGLL 533
             K E R ++A+ LFY++S+E+Y +LIGENP+AIP L+++V+  D  D +K++AL+A+ GLL
Sbjct:   484 KTETRLYSASALFYLSSVEDYSRLIGENPDAIPGLMNIVKGDDYGDSAKRSALLAVMGLL 543

Query:   534 MHSGNHWRFLAAGAVPLLLNLLTSSD-SEELITDSLAVLATLAEKLDGTIAILHHGALDM 592
             M S NHWR LAAGAVP+LL+LL S + S  L  D LA LA LAE  DGTI ++  G L +
Sbjct:   544 MQSDNHWRVLAAGAVPILLDLLRSGEISGGLTADCLATLAKLAEYPDGTIGVIRRGGLKL 603

Query:   593 IMKILDSCTSR--AGKEYCVSLLLALCINGGANVVALLVKXXXXXXXXXXXXXXXXXRAS 650
              +KIL S      A K++CV L+L LC+NGG +VV +LVK                   S
Sbjct:   604 AVKILSSSEDSPVAVKQHCVGLILNLCLNGGRDVVGVLVKNSLVMGSLYTVLSNGEYGGS 663

Query:   651 KKASALIRILHEFYERHSSGSTTPVLPQDRSVHVW 685
             KKASALIR++HEF ER  +GS  P L + R VH W
Sbjct:   664 KKASALIRMIHEFQER-KTGSVEPNLQRGRFVHAW 697

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0010029 "regulation of seed germination" evidence=IGI

TAIR|locus:2195563 PUB19 "plant U-box 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 1441 (512.3 bits), Expect = 1.5e-147, P = 1.5e-147
 Identities = 311/692 (44%), Positives = 438/692 (63%)

Query:     7 GLGRRVLTFPAVHPCEXXXXXXXXXXXXXXAHDICTYKSEFFSTNKRNALKAIRQVHNLL 66
             G  RR+LTFPAV+PCE              A +I ++K + FSTNKR+  + +R V  L+
Sbjct:     7 GSSRRILTFPAVNPCESISLTTLVDSLLQLAGEILSFKPKHFSTNKRSVKETLRHVQTLV 66

Query:    67 IFLEELRVES--ADIPG--SLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSDRVSN 122
             IF EELR++     IP   S+++SLSELH+ FQ++++LL+DCTR+GA+L+MLM S +VS 
Sbjct:    67 IFFEELRIQIRVGSIPAGRSVILSLSELHVIFQKLKFLLDDCTRDGAKLYMLMNSGQVSA 126

Query:   123 QLRLFIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAIFETDPDDKRVLNDVIRIL 182
               R   R+I T+LD  P+ ++D+  EV EL+ LVMRQ RK+    D DDKR ++ V    
Sbjct:   127 HFRDLTRSISTSLDTFPVRSVDLPGEVNELIYLVMRQTRKSEARPDRDDKRAIDSVYWFF 186

Query:   183 GRFEDGIRPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEITIEYLNVDKRS--ELALLSS 240
               FE+ I P+  E+ RVLD++G+ KW  C +E+ FL  EI+     V K+S  E+ LLS+
Sbjct:   187 NLFENRINPNSDEILRVLDHIGVRKWRDCVKEIDFLREEIS-----VGKKSNIEIELLSN 241

Query:   241 LMGFLSYCKCIMFDLVDNEASQQVSKKCCNNMLGGLTPDDFTCPISLEIMKDPVTLSTGH 300
             LMGF+ YC+C++   +D +  ++  ++    M+  L  DD  CPISLEIM DPV L +GH
Sbjct:   242 LMGFICYCRCVILRGIDVDDEEKDKEEDDLMMVRSLNVDDLRCPISLEIMSDPVVLESGH 301

Query:   301 TYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSIAEESGHKNR 360
             TYDR+SI KWF +GN TCPKTG+ L S  L+ N  +K++IQ +S  NGV + ++ G K  
Sbjct:   302 TYDRSSITKWFASGNITCPKTGKTLVSTVLVDNFSVKQVIQSYSKQNGVVMGQK-GKKKV 360

Query:   361 DITRTVLAGSLAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEV 420
             D+     A SLAAE A KL A F++  L++G  EE  K   E+R+LTK+S F RSCLVE 
Sbjct:   361 DV-----AESLAAEEAGKLTAEFLAGELIKGDEEEMVKALVEIRILTKTSTFYRSCLVEA 415

Query:   421 GCIPXXXXXXXXXXXXTQENAIAALLNLSKHCKSKSMVV--ESGGLDFIVDMVKKGLKVE 478
             G +              QENA+A ++NLSK    K+ +V  + GGL  IV+++  G + E
Sbjct:   416 GVVESLMKILRSDDPRIQENAMAGIMNLSKDIAGKTRIVGEDGGGLRLIVEVLNDGARRE 475

Query:   479 ARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR--DGTDRSKKNALVAIFGLLMHS 536
             +RQ+AAA LFY++S+ +Y +LIGE  +AIP LV +V+  D  D +K+NAL+AI  LLM+ 
Sbjct:   476 SRQYAAAALFYLSSLGDYSRLIGEISDAIPGLVRIVKSCDYGDSAKRNALIAIRSLLMNQ 535

Query:   537 -GNHWRFLAAGAVPLLLNLLTSSDSEELIT-DSLAVLATLAEKLDGTIAILHHGALDMIM 594
               NHWR LAAG VP+LL+L+ S +  + +T DS+A+LA +AE  DG I++L  G L + +
Sbjct:   536 PDNHWRILAAGIVPVLLDLVKSEEISDGVTADSMAILAKMAEYPDGMISVLRRGGLKLAV 595

Query:   595 KILDSC-TSRAGKEYCVSLLLALCINGGANVVALLVKXXXXXXXXXXXXXXXXXRASKKA 653
             KIL S   S A K++CV+LLL LC NGG++VV  L K                    KKA
Sbjct:   596 KILGSSEVSPATKQHCVALLLNLCHNGGSDVVGSLAKNPSIMGSLYTASSNGELGGGKKA 655

Query:   654 SALIRILHEFYERHSSGSTTPVLPQDRSVHVW 685
             SALI+++HEF ER  +G   PVL ++R VH W
Sbjct:   656 SALIKMIHEFQER-KTGPGEPVLERERFVHAW 686

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010029 "regulation of seed germination" evidence=IGI

TAIR|locus:2013688 PUB17 "plant U-box 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
 Identities = 184/600 (30%), Positives = 311/600 (51%)

Query:    73 RVESADIPGSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSDRVSNQLRLFIRAIG 132
             R +S+    + ++ L EL+L   R + L++ C  + ++LW+L+++  +S       + I 
Sbjct:    93 RSKSSVSESTALLCLKELYLLLYRSKILVDYCA-QSSKLWLLLQNPSISGYFHDLNQEIS 151

Query:   133 TALDVLPLAAIDVSSEVKELVDLVMRQARKAIFETDPDDKRVLNDVIRILGRFEDGIRPD 192
             T LDVLP+  + +S +++E ++L+ RQ+RKA    D +D+ +       L  FE+G  P 
Sbjct:   152 TLLDVLPVNDLGLSDDIREQIELLQRQSRKARLYIDKNDESLRESFYSFLDGFENGKIPS 211

Query:   193 KSEVKRV-LDYLGITKWSQCNQEVKFLDSEITIEYLNVDKRSELALLSSLMGFLSYCKCI 251
               +++   ++ LGI     C  E++FL+ +I + + + D     ++++  +    YC+ +
Sbjct:   212 SVDLRMFFVEKLGIRDSKSCRSEIEFLEEQI-VNH-DGDLEPTGSVINGFVAITRYCRFL 269

Query:   252 MFDLVDNEASQQVS---KKCCNNMLG---GLT----PDDFTCPISLEIMKDPVTLSTGHT 301
             +F   ++     +    KK     +    G T    P DF CPISL++M DPV +STG T
Sbjct:   270 LFGFEEDGMEWWIENNPKKPRKGFVAQEIGDTFITVPKDFVCPISLDLMTDPVIISTGQT 329

Query:   302 YDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSIAEESGHKNRD 361
             YDR SI +W   G+ TCPKTG+ L    ++ N  LK +I  W   +G+S   E      +
Sbjct:   330 YDRNSIARWIEEGHCTCPKTGQMLMDSRIVPNRALKNLIVQWCTASGISYESEFTDSPNE 389

Query:   362 ITRTVLAGSLAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVG 421
                + L    A E A K   + +   L +G+   +   A E+RLL K+   NR+ + E G
Sbjct:   390 SFASALPTKAAVE-ANKATVSILIKYLADGSQAAQTVAAREIRLLAKTGKENRAYIAEAG 448

Query:   422 CIPXXXXXXXXXXXXTQENAIAALLNLSKHCKSKSMVVESGG-LDFIVDMVKKGLKVEAR 480
              IP             QEN++ A+LNLS + K+KS ++E G  L+ IV ++  GL VEA+
Sbjct:   449 AIPHLCRLLTSENAIAQENSVTAMLNLSIYEKNKSRIMEEGDCLESIVSVLVSGLTVEAQ 508

Query:   481 QHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHW 540
             ++AAATLF ++++ EY+K I    + + AL  ++++GT R KK+A+ A++ L  H  N  
Sbjct:   509 ENAAATLFSLSAVHEYKKRIAIVDQCVEALALLLQNGTPRGKKDAVTALYNLSTHPDNCS 568

Query:   541 RFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAI-LHHGALDMIMKILDS 599
             R +  G V  L+  L +   E +  ++   LA L  +  G  AI     A+  +M ++  
Sbjct:   569 RMIEGGGVSSLVGALKN---EGVAEEAAGALALLVRQSLGAEAIGKEDSAVAGLMGMM-R 624

Query:   600 CTSRAGKEYCVSLLLALCINGGANVVALLVKXXXXXXXXXXXXXXXXXRASKKASALIRI 659
             C +  GKE  V+ LL LC +GGA V   +++                 RA +KA++L R+
Sbjct:   625 CGTPRGKENAVAALLELCRSGGAAVAEKVLRAPAIAGLLQTLLFTGTKRARRKAASLARV 684

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0009626 "plant-type hypersensitive response" evidence=IGI

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IGI

TAIR|locus:2181077 SAUR21 "SMALL AUXIN UP RNA 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 182/646 (28%), Positives = 331/646 (51%)

Query:    37 AHDICTYKSEFFSTNKRNALKAIRQVHNLLIFLEELRVESADI---PGSLVISLSELHLT 93
             +H+I + +   F   +RN+L  IR+V  L    +EL +  + +     S  +   E+ + 
Sbjct:    41 SHEISSMQPLPFIL-RRNSLSLIRKVKILASVFDELLLPRSQLVVYSQSAHLCFEEMQIV 99

Query:    94 FQRIRYLLEDCTREGARLWMLMKSDRVSNQLRLFIRAIGTALDVLPLAAIDVSSEVKELV 153
              QRI+ L++DC+R  ++LW+L++ D V+      +  + T LD+LPL   D+S + ++L+
Sbjct:   100 MQRIKSLIDDCSRV-SKLWLLLQIDIVAFNFHELVTDLSTVLDILPLHDFDLSDDAQDLI 158

Query:   154 DLVMRQARKAIFETDPDDKRVLNDVIRILGRFEDGIRPDKSEVKRVLDYLGITKWSQCNQ 213
              L+ +Q   ++   D  D  +   V   +   +  I PD S + ++ + LG++  +    
Sbjct:   159 SLLTKQCSDSVQFVDARDVALRRKVTDTIAGIKHQISPDHSTLIKIFNDLGLSDSASLTD 218

Query:   214 EVKFLDSEITIEYLNVDKRSELALLSSLMGFLSYCKCIMFDLVDNEASQQVSKKCCNNML 273
             E++ L+ EI  +   +D RS+ A  +SL+G + Y KC+++      ++     +   ++ 
Sbjct:   219 EIQRLEDEIQDQ---IDDRSKSAA-ASLIGLVRYSKCVLY----GPSTPAPDFRRHQSLS 270

Query:   274 GGLTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVN 333
                 P DF CPI+LE+M+DPV ++TG TYDR SI  W ++G++TCPKTG+ L+   L+ N
Sbjct:   271 DANIPADFRCPITLELMRDPVVVATGQTYDRESIDLWIQSGHNTCPKTGQVLKHTSLVPN 330

Query:   334 LVLKRIIQDWSVDNGVSIAEESGHKNRDITRTVLAGSLAAEGAMKLLANFISDRLLEGTS 393
               LK +I  W  D  +   E  G    +      A    A    K++ +F+ ++L   + 
Sbjct:   331 RALKNLIVLWCRDQKIPF-ELYGDGGGEP-----APCKEAVEFTKMMVSFLIEKL---SV 381

Query:   394 EEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPXXXXXXXXXXXXTQENAIAALLNLSKHCK 453
              + N V +E+R L KS    R+C+ E G IP             Q NA+  +LNLS   +
Sbjct:   382 ADSNGVVFELRALAKSDTVARACIAEAGAIPKLVRYLATECPSLQINAVTTILNLSILEQ 441

Query:   454 SKSMVVES-GGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVD 512
             +K+ ++E+ G L+ ++++++ G   EA+ +AAATLF +A +  YR+ +G     +  LVD
Sbjct:   442 NKTRIMETDGALNGVIEVLRSGATWEAKANAAATLFSLAGVSAYRRRLGRKARVVSGLVD 501

Query:   513 MVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDS-EELITDSLAVL 571
             + + G   SK++ALVAI  L+    N  RF+ AG +        + D+ +EL  +++AV+
Sbjct:   502 LAKQGPTSSKRDALVAILNLVAERENVGRFVEAGVMG------AAGDAFQELPEEAVAVV 555

Query:   572 ATLAEKLDGTIAILHHGALDMIMKILDSCTSRAG--KEYCVSLLLALCINGGANVVALLV 629
               +  +  G +A+    A  +I  + +     A   +E   + L+ +C  GG+ +VA + 
Sbjct:   556 EAVVRR-GGLMAV--SAAFSLIRLLGEVMREGADTTRESAAATLVTMCRKGGSELVAEMA 612

Query:   630 KXXXXXXXXXXXXXXXXXRASKKASALIRILHEFY--ERHSSGSTT 673
                               R  +KA++L+R L  +   + H++ + T
Sbjct:   613 AIPGIERVIWEMIGAGTARGGRKAASLMRYLRRWAAGDTHNTAAET 658

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

UNIPROTKB|Q6EUK7 PUB4 "U-box domain-containing protein 4" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
 Identities = 194/655 (29%), Positives = 324/655 (49%)

Query:    50 TNKRNALKAIRQVHNLLIFLEELRVESAD---IPGSLVISLSELHLTFQRIRYLLEDCTR 106
             + +RN     R++  L   LE + +++A       +  +   EL++   R   L+     
Sbjct:    61 SQRRNVDALARRLALLSAILESILLDTAAAGAFSDAANLCFRELYVVLFRAELLVSYVAS 120

Query:   107 EGARLWMLMKSDRVSNQLRLFIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQAR-KAIF 165
              G R W L++S  ++   R     +   LDVLP A++ +S +   L+DL+    R +A  
Sbjct:   121 AG-RAWALLRSPHLAASFRDLDAELAVVLDVLPAASLRLSHDATGLLDLLRAHCRCRAPA 179

Query:   166 ET-DPDDKRVLNDVIRILGRFEDGIRPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEITI 224
             +  DPD+  +   ++  L +F+ G  PD   ++ +L  +GI+  + C  E+ +L+ +I  
Sbjct:   180 QYHDPDEAALRERLMDALRQFDLGQPPDHPSLQSLLADMGISTAASCRAEIDYLEEQI-- 237

Query:   225 EYLNVDKRSELALLSSLMGFLSYCKCIMFDLVDNEASQQV----SKKCCNNMLGG----- 275
               L+ ++ ++L L+ S++  L YC   +FD  + +A +      +++   ++ GG     
Sbjct:   238 --LSQEEDTDLPLVGSVLALLRYCLFAVFDPSNAKALRDWPLSGNRQRLLSIGGGDDTSF 295

Query:   276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLV 335
               P +F+CPISL++M+DPV  STG TYDR SI++W   G+STCP +G+ L    L+ N  
Sbjct:   296 SVPKEFSCPISLDLMRDPVVASTGQTYDRPSIIQWIEEGHSTCPNSGQTLADHRLVPNRA 355

Query:   336 LKRIIQDWSVDNGVSIAEESGHKNRDITRTVLAG--SLAAEGAMKLLANFISDRLLEGTS 393
             L+ +I  W    G+    +S   N  +   V A   S AA  A K  A  +   L +G+ 
Sbjct:   356 LRSLISQWCGVYGLQY--DSPESNEGMAECVAASCSSRAAMEANKATARILVRMLEDGSE 413

Query:   394 EEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPXXXXXXXXXXXXTQENAIAALLNLSKHCK 453
               K   A E+RLL K+   NR+ + ++G IP             QENA+ ALLNLS    
Sbjct:   414 NVKAVAAKEIRLLAKTGKQNRAFIADLGAIPLLCRLLLSNDWMAQENAVTALLNLSIFEP 473

Query:   454 SKSMVVESGG-LDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVD 512
             +K  ++E  G L  IV +++ G   EA+++AAATLF ++ +  ++KLI   P A+  L  
Sbjct:   474 NKGRIMEQEGCLRLIVGVLQNGWTTEAKENAAATLFSLSVVHNFKKLIMNEPGAVEELAS 533

Query:   513 MVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLA 572
             M+  GT R KK+A++A+F L  H  +  R L + AV  L+  L +    E    +LA+L 
Sbjct:   534 MLTKGTSRGKKDAVMALFNLSTHPESSARMLESCAVVALIQSLRNDTVSEEAAGALALLM 593

Query:   573 TLAEKLDGTIAILHHGALDMIMKILDSCTSRA---GKEYCVSLLLALCINGGANVVALLV 629
                 K    + ++  G+ + ++  L     R    GKE  VS L  +C  GG+ +V  + 
Sbjct:   594 ----KQPSIVHLV--GSSETVITSLVGLMRRGTPKGKENAVSALYEICRRGGSALVQRVA 647

Query:   630 KXXXXXXXXXXXXXXXXXRASKKASALIRILH--EFYERHSSGSTTPVLPQDRSV 682
             K                 RA KKAS ++++    +     + GST  V+  DRS+
Sbjct:   648 KIPGLNTVIQTITLNGTKRAKKKASLIVKMCQRSQMPSAMALGSTLTVV--DRSL 700

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

UNIPROTKB|Q0IMG9 SPL11 "E3 ubiquitin-protein ligase SPL11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 184/585 (31%), Positives = 306/585 (52%)

Query:    46 EFFSTNKRNALKAIRQVHNLLIFLEELRVES-ADIPGSLVI-SLSELHLTFQRIRYLLED 103
             E+ +  +R  L   R++  L  F+EELR     +  G     +L+ L    +    LL  
Sbjct:    44 EYRNAYRRQLLALSRRIRLLGPFVEELRERRRGEGEGEEEERALAPLADALEAALALLR- 102

Query:   104 CTREGARLWMLMKSDRVSNQLRLFIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKA 163
               REG+R+ ++++ D V  + +  I  +  AL  +P   +D+S EV+E V+LV  Q ++A
Sbjct:   103 LGREGSRISLVLERDSVMKKFQGVILQLEQALCDIPYNELDISDEVREQVELVHAQLKRA 162

Query:   164 IFETDPDDKRVLNDVIRILGRFEDGIRPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEIT 223
                 D  D    ND++ +  +  D    + + + R+ + L +   +   QE   L  E+ 
Sbjct:   163 KERIDMPDDEFYNDLLSVYDKNYDP-SAELAILGRLSEKLHLMTITDLTQESLALH-EMV 220

Query:   224 IEYLNVDKRSELALLSSLMGFLS-YCKCIMFDLVDNEASQQVSKKCCNNMLGGLTPDDFT 282
                   D    +  +S L+  +  + +    D+    AS+ +     +  +    PD+F 
Sbjct:   221 ASGGGQDPGEHIERMSMLLKKIKDFVQTQNPDMGPPMASRVLDSNGDSRPI--TIPDEFR 278

Query:   283 CPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQD 342
             CPISLE+MKDPV +STG TY+RA I KW  +G+ TCP T +++ +  L  N VL+ +I  
Sbjct:   279 CPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVLRSLISQ 338

Query:   343 WSVDNGVSIAEESGHKNRDITRTVLAGSLAAEGAMKLLANFISDRLLEGTSEEKNKVAYE 402
             W   NG+   + S   N+    T    S        LL+     +L    +EE+   A E
Sbjct:   339 WCETNGMEPPKRSTQPNKP---TPACSSSERANIDALLS-----KLCSPDTEEQRSAAAE 390

Query:   403 VRLLTKSSIFNRSCLVEVGCIPXXXXXXXXXXXXTQENAIAALLNLSKHCKSKSMVVESG 462
             +RLL K +  NR C+ E G IP            TQE+A+ ALLNLS H  +K+ ++ SG
Sbjct:   391 LRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDNKASIISSG 450

Query:   463 GLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSK 522
              +  IV ++K G  +EAR++AAATLF ++ I+EY+  IG    AIPALV ++ +G+ R K
Sbjct:   451 AVPSIVHVLKNG-SMEARENAAATLFSLSVIDEYKVTIG-GMGAIPALVVLLGEGSQRGK 508

Query:   523 KNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTI 582
             K+A  A+F L ++ GN  R + AG VPL++ L+T+     L+ +++A+L+ L+   +G  
Sbjct:   509 KDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGA-LMDEAMAILSILSSHPEGKA 567

Query:   583 AILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVAL 627
             AI     + ++++++ S T R  +E   +++L LC +G  ++V L
Sbjct:   568 AIGAAEPVPVLVEMIGSGTPR-NRENAAAVMLHLC-SGEHHLVHL 610

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0043069 "negative regulation of programmed cell death" evidence=IMP

GO:0048586 "regulation of long-day photoperiodism, flowering" evidence=IMP

TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
 Identities = 181/605 (29%), Positives = 303/605 (50%)

Query:    59 IRQVHNLLIFLEELRVESADIPGSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSD 118
             +R++  L  F EEL   + ++    +     + +       L       G++L+ L   D
Sbjct:    41 VRRITLLSPFFEELIDVNVELKKDQITGFEAMRIALDSSLELFRS-VNGGSKLFQLFDRD 99

Query:   119 RVSNQLRLFIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAIFETDPDDKRVLNDV 178
              +  + R     I  AL  +P   I+VS EV+E V L+  Q ++A    +  D ++ +D 
Sbjct:   100 SLVEKFRDMTVEIEAALSQIPYEKIEVSEEVREQVQLLHFQFKRAKERWEESDLQLSHD- 158

Query:   179 IRILGRFEDGIRPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEITIEYLNVDKRSELALL 238
                L   E+ + PD   +KR+   L +T   +  +E   +  E  + Y + D       +
Sbjct:   159 ---LAMAENVMDPDPIILKRLSQELQLTTIDELKKESHAIH-EYFLSY-DGDPDDCFERM 213

Query:   239 SSLMGFLSYCKCIMFDLVDNEASQQVSKKCCNNMLGGLTPDDFTCPISLEIMKDPVTLST 298
             SSL+  L     +  +  D + S     +  +     + P+ F CPISLE+MKDPV +ST
Sbjct:   214 SSLLKNL--VDFVTMESSDPDPS--TGSRIVSRHRSPVIPEYFRCPISLELMKDPVIVST 269

Query:   299 GHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSIAEESGHK 358
             G TY+R+SI KW  AG+ TCPK+ E L    L  N VLK +I  W   NG+ + +  G  
Sbjct:   270 GQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIELPQNQGS- 328

Query:   359 NRDITRTVLAGSLAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLV 418
                  RT   G  ++    +     + ++L  GT+E++   A E+RLL K ++ NR C+ 
Sbjct:   329 ----CRTTKIGGSSSSDCDRTFVLSLLEKLANGTTEQQRAAAGELRLLAKRNVDNRVCIA 384

Query:   419 EVGCIPXXXXXXXXXXXXTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVE 478
             E G IP            TQE+++ ALLNLS +  +K  +V++G +  IV+++K G  +E
Sbjct:   385 EAGAIPLLVELLSSPDPRTQEHSVTALLNLSINEGNKGAIVDAGAITDIVEVLKNG-SME 443

Query:   479 ARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGN 538
             AR++AAATLF ++ I+E +  IG    AI AL+ ++ +GT R KK+A  AIF L ++ GN
Sbjct:   444 ARENAAATLFSLSVIDENKVAIGA-AGAIQALISLLEEGTRRGKKDAATAIFNLCIYQGN 502

Query:   539 HWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILD 598
               R +  G V  L  LL  +    ++ ++LA+LA L+   +G  AI    ++ ++++I+ 
Sbjct:   503 KSRAVKGGIVDPLTRLLKDAGGG-MVDEALAILAILSTNQEGKTAIAEAESIPVLVEIIR 561

Query:   599 SCTSRAGKEYCVSLLLALCINGGANVVALLV-KXXXXXXXXXXXXXXXXXRASKKASALI 657
             + + R  +E   ++L  LCI    N+  L V +                 RA +KA++L+
Sbjct:   562 TGSPR-NRENAAAILWYLCIG---NIERLNVAREVGADVALKELTENGTDRAKRKAASLL 617

Query:   658 RILHE 662
              ++ +
Sbjct:   618 ELIQQ 622

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;ISS

GO:0019894 "kinesin binding" evidence=IEA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0046777 "protein autophosphorylation" evidence=RCA

UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 174/567 (30%), Positives = 285/567 (50%)

Query:   105 TREGARLWMLMKSDRVSNQLRLFIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAI 164
             TR+G+++   M+ D   ++     R I  ALD LP     +  EV+E V LV  Q ++A 
Sbjct:    66 TRDGSKIDQAMRGDAFLDEFAGVNRQIHLALDALPYNTFHMPQEVQEQVALVHSQFQRAS 125

Query:   165 FETDPDDKRVLNDVIRILGRFEDGIRPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEITI 224
               TDP D ++  D+   L    D    D + + R+   L +   +    E   L + +  
Sbjct:   126 TRTDPPDTQLSMDLAWAL---TDN-PSDPALLTRISHKLQLHTMADMKNESIALHNMVIS 181

Query:   225 EYLNVDKRSELALLSSLMGFLSYCKCIMFDLVDNEASQQVSKKCCNNMLGGLTPDDFTCP 284
                  D   +   +SSL+  L    C++ +   N+A    S    +     + PD+F CP
Sbjct:   182 TAGEPDGCVDQ--MSSLLKKLK--DCVVTEDHANDALTTRSASIKHR--SPIIPDEFRCP 235

Query:   285 ISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWS 344
             ISLE+M+DPV +S+G TY+R+ I KW  +G+ TCPKT + L    L  N VLK +I  W 
Sbjct:   236 ISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFVLKSLISQWC 295

Query:   345 VDNGVSIAEESGHKNRDITRTVLAGSLAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVR 404
               NG+ + +     +RD  +   +      G + L+     +RL  G  +E+   A E+R
Sbjct:   296 EANGIELPKNK-QNSRD-KKAAKSSDYDHAGLVSLM-----NRLRSGNQDEQRAAAGEIR 348

Query:   405 LLTKSSIFNRSCLVEVGCIPXXXXXXXXXXXXTQENAIAALLNLSKHCKSKSMVVESGGL 464
             LL K ++ NR C+ E G IP            TQE+A+ ALLNLS H  +K+ +V+S  +
Sbjct:   349 LLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVTALLNLSIHENNKASIVDSHAI 408

Query:   465 DFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKN 524
               IV+++K G  +E R++AAATLF ++ ++E +  IG    AIP L++++ DG+ R KK+
Sbjct:   409 PKIVEVLKTG-SMETRENAAATLFSLSVVDENKVTIGA-AGAIPPLINLLCDGSPRGKKD 466

Query:   525 ALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAI 584
             A  AIF L ++ GN  R + AG V  L+N L       +I ++L++L+ LA   +G I I
Sbjct:   467 AATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGG-MIDEALSLLSILAGNPEGKIVI 525

Query:   585 LHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKXXXXXXXXXXXXXX 644
                  +  +++++ + + R  +E   ++L  LC       +A   K              
Sbjct:   526 ARSEPIPPLVEVIKTGSPR-NRENAAAILWLLCSADTEQTLA--AKAAGVEDALKELSET 582

Query:   645 XXXRASKKASALIRILHEFYERHSSGS 671
                RA +KAS+++ ++H+  E    G+
Sbjct:   583 GTDRAKRKASSILELMHQANEDSLKGN 609

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

TAIR|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 177/581 (30%), Positives = 297/581 (51%)

Query:    45 SEFFSTNKRNALKAIRQVHNLLIFLEELRVESADIPGSLVISLSELHLTFQRIRYLLEDC 104
             S++  T K+      R++  L+   EE+R  +  I    + +L  L       +  L+ C
Sbjct:    23 SDYRITVKKLCYNLARRLKLLVPMFEEIRESNEPISEDTLKTLMNLKEAMCSAKDYLKFC 82

Query:   105 TREGARLWMLMKSDRVSNQLRLFIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAI 164
             + +G++++++M+ ++V+++L      +  +L  +P   +D+S EV+E V+LV+ Q R+A 
Sbjct:    83 S-QGSKIYLVMEREQVTSKLMEVSVKLEQSLSQIPYEELDISDEVREQVELVLSQFRRAK 141

Query:   165 FETDPDDKRVLNDVIRILGRFEDGIRPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEITI 224
                D  D  +  D+  +  +  D +   +  ++RV   L + +     QE   L   +  
Sbjct:   142 GRVDVSDDELYEDLQSLCNKSSD-VDAYQPVLERVAKKLHLMEIPDLAQESVALHEMVAS 200

Query:   225 EYLNVDKR-SELAL-LSSLMGFLSYCKCIMFDL---VDNEASQQVSKKCCNNMLGGLTPD 279
                +V +   E+A+ L  +  F+        +    V++ ++ Q S      +   + PD
Sbjct:   201 SGGDVGENIEEMAMVLKMIKDFVQTEDDNGEEQKVGVNSRSNGQTSTAASQKI--PVIPD 258

Query:   280 DFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRI 339
             DF CPISLE+M+DPV +S+G TY+R  I KW   G+STCPKT + L S  L  N VL+ +
Sbjct:   259 DFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALTSTTLTPNYVLRSL 318

Query:   340 IQDWSVDNGVSIAEESGHKNRDITRTVLAGSLAAEGAMKLLANFISD---RLLEGTSEEK 396
             I  W   N +   +          R V + S  AE      AN I D   RL  G  E++
Sbjct:   319 IAQWCEANDIEPPKPPSSLR---PRKVSSFSSPAE------ANKIEDLMWRLAYGNPEDQ 369

Query:   397 NKVAYEVRLLTKSSIFNRSCLVEVGCIPXXXXXXXXXXXXTQENAIAALLNLSKHCKSKS 456
                A E+RLL K +  NR  + E G IP             QE+++ ALLNLS    +K 
Sbjct:   370 RSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSICENNKG 429

Query:   457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRD 516
              +V +G +  IV ++KKG  +EAR++AAATLF ++ I+E +  IG    AIP LV ++ +
Sbjct:   430 AIVSAGAIPGIVQVLKKG-SMEARENAAATLFSLSVIDENKVTIGALG-AIPPLVVLLNE 487

Query:   517 GTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE 576
             GT R KK+A  A+F L ++ GN  + + AG +P L  LLT   S  ++ ++LA+LA L+ 
Sbjct:   488 GTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSG-MVDEALAILAILSS 546

Query:   577 KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALC 617
               +G   I    A+  +++ + + + R  +E   ++L+ LC
Sbjct:   547 HPEGKAIIGSSDAVPSLVEFIRTGSPR-NRENAAAVLVHLC 586

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2013990 AT1G71020 [Arabidopsis thaliana (taxid:3702)]

 Score = 512 (185.3 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
 Identities = 127/387 (32%), Positives = 207/387 (53%)

Query:   278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLK 337
             P+DF CPISLE+MKDP  +STG TY+R+ I +W   GN +CPKT ++L++  L  N VL+
Sbjct:   244 PEDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKLENFTLTPNYVLR 303

Query:   338 RIIQDWSVDNGVSIAEESGHKNRDITRTVLAGSLA-AEGAMKLLANFISDRLLEGTSEEK 396
              +I  W   +  +I +  G+ N     +   GS     G M  +   +  +L   + E++
Sbjct:   304 SLISQWCTKH--NIEQPGGYMNGRTKNS--DGSFRDLSGDMSAIRALVC-KLSSQSIEDR 358

Query:   397 NKVAYEVRLLTKSSIFNRSCLVEVGCIPXXXXXXXXXXXX-TQENAIAALLNLSKHCKSK 455
                  E+R L+K S  NR  + E G IP             TQENA+  +LNLS +  +K
Sbjct:   359 RTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQENAVTCILNLSIYEHNK 418

Query:   456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR 515
              +++ +G +  IV +++ G  +EAR++AAATLF ++  +E + +IG +  AI ALVD+++
Sbjct:   419 ELIMLAGAVTSIVLVLRAG-SMEARENAAATLFSLSLADENKIIIGASG-AIMALVDLLQ 476

Query:   516 DGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLA 575
              G+ R KK+A  A+F L ++ GN  R + AG V  L+ +LT S SE +  ++L +L+ LA
Sbjct:   477 YGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSSERMADEALTILSVLA 536

Query:   576 EKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKXXXXX 635
                    AIL   A+  ++  L     R  +E   ++LL LC      +++  +      
Sbjct:   537 SNQVAKTAILRANAIPPLIDCLQKDQPR-NRENAAAILLCLCKRDTEKLIS--IGRLGAV 593

Query:   636 XXXXXXXXXXXXRASKKASALIRILHE 662
                         RA +KA++L+ +L +
Sbjct:   594 VPLMELSRDGTERAKRKANSLLELLRK 620

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XIJ5	PUB18_ARATH	6, ., 3, ., 2, ., -	0.4791	0.9854	0.9684	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.3.14	LOW CONFIDENCE prediction!
3rd Layer	6.3.2	0.691
3rd Layer	3.6.3	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00028839001 SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (683 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	685
smart00504	63	smart00504, Ubox, Modified RING finger domain	1e-22
pfam04564	73	pfam04564, U-box, U-box domain	1e-17
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	8e-13
pfam13445	55	pfam13445, zf-RING_LisH, RING-type zinc-finger, Li	2e-08
pfam11789	57	pfam11789, zf-Nse, Zinc-finger of the MIZ type in	4e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	4e-07
smart00184	40	smart00184, RING, Ring finger	2e-06
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	8e-06
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-05
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	3e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	7e-05
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	9e-05
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	6e-04

>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain

 Score = 91.1 bits (227), Expect = 1e-22
 Identities = 33/64 (51%), Positives = 45/64 (70%), Gaps = 1/64 (1%)

Query: 280 DFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRI 339
           +F CPISLE+MKDPV L +G TY+R++I KW    + T P TG+ L  ++L+ NL LK  
Sbjct: 1   EFLCPISLEVMKDPVILPSGQTYERSAIEKWL-LSHGTDPVTGQPLTHEDLIPNLALKSA 59

Query: 340 IQDW 343
           IQ+W
Sbjct: 60  IQEW 63

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63

>gnl|CDD|203049 pfam04564, U-box, U-box domain

 Score = 77.3 bits (191), Expect = 1e-17
 Identities = 31/66 (46%), Positives = 42/66 (63%)

Query: 278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLK 337
           PD+F  PI+LE+MKDPV L +G TYDR++I +   + + T P T E L   +L+ NL LK
Sbjct: 2   PDEFLDPITLELMKDPVILPSGITYDRSTIERHLLSVDPTDPFTREPLTHDQLIPNLELK 61

Query: 338 RIIQDW 343
             I  W
Sbjct: 62  EKIDAW 67

This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues. Length = 73

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 65.0 bits (159), Expect = 8e-13
 Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 2/114 (1%)

Query: 417 LVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS-KSMVVESGGLDFIVDMVKKGL 475
           +++ G +P+L+ LLSS D + Q  A  AL NLS         VVE+GGL  +V ++K   
Sbjct: 3   VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE- 61

Query: 476 KVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAI 529
             E  + A   L  +A+  E  KLI      +P LV+++    +  +KNA  A+
Sbjct: 62  DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGAL 115

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 277 TPDDFTCPISLEIMKD----PVTLSTGHTYDRASILKWFRAGNS-TCP 319
               F CPIS E+M D    PV L  GH Y R ++ K  + G    CP
Sbjct: 7   FHSIFVCPISKEVMTDEENPPVMLPCGHVYSRKALEKLAKNGGKFKCP 54

This zinc-finger is the dimerisation motif for LisH proteins, and is also a typical RING-type of plant ubiquitin ligases. Length = 55

>gnl|CDD|192832 pfam11789, zf-Nse, Zinc-finger of the MIZ type in Nse subunit

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 280 DFTCPISLEIMKDPVTLST--GHTYDRASILKWFRAGNST-CPKTG 322
             TCP++L+  ++PVT S    H +++ +IL   R   +  CP  G
Sbjct: 11  SLTCPLTLQPFEEPVT-SKKCNHVFEKDAILSMLRRNKTVKCPVAG 55

Nse1 and Nse2 are novel non-SMC subunits of the fission yeast Smc5-6 DNA repair complex. This family is the zinc-finger domain similar to the MIZ type of zinc-finger. Length = 57

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 46.3 bits (111), Expect = 4e-07
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 413 NRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLS 449
           N+  ++E G +P L++LLSS D   QE A  AL NL+
Sbjct: 4   NKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 22/38 (57%), Positives = 26/38 (68%), Gaps = 1/38 (2%)

Query: 283 CPISLEIM-KDPVTLSTGHTYDRASILKWFRAGNSTCP 319
           CPI LE   KDPV L  GHT+ R+ I KW  +GN+TCP
Sbjct: 1   CPICLEEYLKDPVILPCGHTFCRSCIRKWLESGNNTCP 38

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 45.0 bits (107), Expect = 8e-06
 Identities = 27/95 (28%), Positives = 54/95 (56%), Gaps = 2/95 (2%)

Query: 399 VAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS-KSM 457
            A+ +  L+  +  N   +VE G +P+L++LL S+D    + A+ AL NL+   +  K +
Sbjct: 27  AAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86

Query: 458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIAS 492
           V+E+GG+  +V+++      + +++A   L  +AS
Sbjct: 87  VLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 3/99 (3%)

Query: 503 NPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLA-AGAVPLLLNLLTSSDSE 561
               +PALV ++    +  ++ A  A+  L   + ++ + +  AG +P L+ LL S D E
Sbjct: 5   QAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED-E 63

Query: 562 ELITDSLAVLATLAE-KLDGTIAILHHGALDMIMKILDS 599
           E++  +L  L  LA    D  + +L  G +  ++ +LDS
Sbjct: 64  EVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDS 102

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 47.4 bits (113), Expect = 3e-05
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 3/87 (3%)

Query: 477 VEARQHAAATLFYIA-SIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH 535
            + ++   A L  +A + EE RK IG + +A+P LV ++R GT  +K NA  A+ G+L  
Sbjct: 29  PQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNA-AAVLGVLCK 87

Query: 536 SGN-HWRFLAAGAVPLLLNLLTSSDSE 561
             +   + L  G +P LL+LL S  +E
Sbjct: 88  EEDLRVKVLLGGCIPPLLSLLKSGSAE 114

Length = 2102

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 40.1 bits (95), Expect = 7e-05
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query: 413 NRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSK 450
           N+  +V+ G +P+L++LL S+D    + A  AL NLS 
Sbjct: 4   NKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 39.8 bits (93), Expect = 9e-05
 Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 283 CPISLEIMKDPVTLST-GHTYDRASILKWFRAGNSTCPK 320
           CPI LE  KDPVT+   GH +    IL W  +GN TCP 
Sbjct: 1   CPICLEEPKDPVTILPCGHLFCSKCILSWLESGNVTCPL 39

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 37.4 bits (87), Expect = 6e-04
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 282 TCPISLEIMKDPVTLST-GHTYDRASILKWFRAGNSTCP 319
            CPI LE  ++PV L   GH + R+ I KW ++G +TCP
Sbjct: 1   ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCP 39

Length = 45

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	685
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.96
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.95
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.93
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.93
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.93
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.88
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.86
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.81
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.8
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.8
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.73
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.71
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.65
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.63
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.61
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.59
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.55
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.51
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.43
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.39
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.3
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.29
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.25
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.18
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.18
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.16
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.15
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.14
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.12
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	99.08
PRK09687	280	putative lyase; Provisional	98.97
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.93
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.91
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.87
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.84
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.8
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.8
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.79
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.78
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.76
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.69
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.68
PRK09687	280	putative lyase; Provisional	98.61
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.61
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.61
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.59
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.58
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.56
PHA02929	238	N1R/p28-like protein; Provisional	98.55
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.54
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.54
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.54
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.53
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	98.49
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.49
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.44
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.42
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.39
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	98.36
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.35
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.35
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.34
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.32
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.31
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.28
PHA02926	242	zinc finger-like protein; Provisional	98.27
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	98.25
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.24
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.24
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	98.22
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.2
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.2
KOG2660	331	consensus Locus-specific chromosome binding protei	98.19
PF05536	543	Neurochondrin: Neurochondrin	98.17
PF14634	44	zf-RING_5: zinc-RING finger domain	98.17
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.15
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.14
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.02
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.98
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	97.98
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.97
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.96
COG5113	929	UFD2 Ubiquitin fusion degradation protein 2 [Postt	97.93
KOG2973	353	consensus Uncharacterized conserved protein [Funct	97.92
PF05536	543	Neurochondrin: Neurochondrin	97.9
KOG1293	678	consensus Proteins containing armadillo/beta-caten	97.9
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	97.87
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.87
PTZ00429	746	beta-adaptin; Provisional	97.85
COG5222	427	Uncharacterized conserved protein, contains RING Z	97.84
KOG2042	943	consensus Ubiquitin fusion degradation protein-2 [	97.83
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	97.83
PTZ00429	746	beta-adaptin; Provisional	97.81
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.78
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.77
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.68
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	97.65
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.65
TIGR02270	410	conserved hypothetical protein. Members are found	97.63
KOG3678	832	consensus SARM protein (with sterile alpha and arm	97.57
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.55
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.49
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	97.46
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	97.45
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.45
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.43
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.4
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.37
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.36
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.36
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	97.35
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.33
PF05659	147	RPW8: Arabidopsis broad-spectrum mildew resistance	97.31
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	97.29
COG5152	259	Uncharacterized conserved protein, contains RING a	97.28
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	97.27
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.26
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.25
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.24
KOG1002	791	consensus Nucleotide excision repair protein RAD16	97.2
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.13
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.12
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	97.11
TIGR02270	410	conserved hypothetical protein. Members are found	97.11
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.06
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.02
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	97.02
KOG4413	524	consensus 26S proteasome regulatory complex, subun	96.89
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	96.81
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.73
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	96.61
COG5369	743	Uncharacterized conserved protein [Function unknow	96.6
KOG0212	675	consensus Uncharacterized conserved protein [Funct	96.54
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	96.5
COG1413	335	FOG: HEAT repeat [Energy production and conversion	96.48
KOG1242	569	consensus Protein containing adaptin N-terminal re	96.46
COG5369	743	Uncharacterized conserved protein [Function unknow	96.4
KOG4367	699	consensus Predicted Zn-finger protein [Function un	96.39
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	96.38
KOG3036	293	consensus Protein involved in cell differentiation	96.37
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	96.28
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	96.24
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	96.2
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	96.19
KOG0289	506	consensus mRNA splicing factor [General function p	96.14
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	96.14
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.12
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	96.1
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	96.09
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	96.09
KOG2259	823	consensus Uncharacterized conserved protein [Funct	96.06
KOG3039	303	consensus Uncharacterized conserved protein [Funct	96.04
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	95.92
KOG1242	569	consensus Protein containing adaptin N-terminal re	95.91
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	95.91
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	95.86
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	95.86
PF04641	260	Rtf2: Rtf2 RING-finger	95.83
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.73
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	95.71
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	95.69
KOG3036	293	consensus Protein involved in cell differentiation	95.53
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	95.45
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	95.45
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	95.43
PF05004	309	IFRD: Interferon-related developmental regulator (	95.42
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	95.41
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	95.38
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	95.38
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	95.38
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	95.38
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	95.26
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	95.22
KOG2259	823	consensus Uncharacterized conserved protein [Funct	95.2
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	95.11
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.08
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	95.04
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	94.94
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	94.93
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	94.86
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	94.81
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	94.76
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.68
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	94.68
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	94.65
COG5219	1525	Uncharacterized conserved protein, contains RING Z	94.62
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	94.54
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	94.5
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	94.43
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	94.38
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	94.24
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	94.19
KOG0825	1134	consensus PHD Zn-finger protein [General function	94.15
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	94.12
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	94.05
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	94.02
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	93.72
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	93.68
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	93.66
KOG2979	262	consensus Protein involved in DNA repair [General	93.62
KOG3039	303	consensus Uncharacterized conserved protein [Funct	93.49
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	93.4
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	93.34
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	93.13
KOG1824	1233	consensus TATA-binding protein-interacting protein	93.11
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	93.05
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	92.99
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	92.87
COG5175	480	MOT2 Transcriptional repressor [Transcription]	92.83
KOG1001	674	consensus Helicase-like transcription factor HLTF/	92.83
COG5096	757	Vesicle coat complex, various subunits [Intracellu	92.73
PF08045	257	CDC14: Cell division control protein 14, SIN compo	92.7
KOG1824	1233	consensus TATA-binding protein-interacting protein	92.64
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	92.59
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	92.59
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	92.38
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	92.25
KOG0567	289	consensus HEAT repeat-containing protein [General	92.19
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	92.13
PF08045	257	CDC14: Cell division control protein 14, SIN compo	92.09
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	91.87
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	91.82
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	91.71
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	91.45
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	91.3
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	90.98
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	90.83
KOG3113	293	consensus Uncharacterized conserved protein [Funct	90.71
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	90.6
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	90.03
PF05004	309	IFRD: Interferon-related developmental regulator (	89.86
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	89.41
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	89.1
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	89.09
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	88.98
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	88.94
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	88.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	88.89
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	88.76
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	88.68
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	88.61
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	88.55
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	88.54
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	88.43
KOG0567	289	consensus HEAT repeat-containing protein [General	88.34
COG5109	396	Uncharacterized conserved protein, contains RING Z	88.33
KOG3002	299	consensus Zn finger protein [General function pred	88.2
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	88.18
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	87.94
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	87.91
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	87.79
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	87.51
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	87.48
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	87.43
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	87.25
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	87.12
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	86.99
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	86.7
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	86.61
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	86.57
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	86.47
PF07814	361	WAPL: Wings apart-like protein regulation of heter	86.46
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	86.11
KOG2062	929	consensus 26S proteasome regulatory complex, subun	86.0
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	85.89
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	85.31
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	85.23
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	85.2
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	85.08
KOG0298	1394	consensus DEAD box-containing helicase-like transc	84.98
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	84.89
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	84.83
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	84.78
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	84.59
KOG1941	518	consensus Acetylcholine receptor-associated protei	84.34
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	84.17
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	84.04
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	83.54
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	83.3
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	83.17
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	83.09
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	82.84
COG5627	275	MMS21 DNA repair protein MMS21 [DNA replication, r	82.71
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	81.69
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	81.24
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	81.14
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	81.01

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.96  E-value=8.6e-28  Score=292.11  Aligned_cols=282  Identities=20%  Similarity=0.227  Sum_probs=249.2

Q ss_pred             hhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhcCCchhhHHHh-hCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcc
Q 039015          377 MKLLANFISDRLLEG--TSEEKNKVAYEVRLLTKSSIFNRSCLVE-VGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCK  453 (685)
Q Consensus       377 ~~~~i~~Lv~~L~s~--~~~~~~~a~~~L~~La~~~~~~r~~i~~-~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~  453 (685)
                      ....+.+|++.|+++  +++.+..|+..|+.+++.+++||..+++ .|+||.|+.+|.+++..++++|+.+|.||+.+++
T Consensus        11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~   90 (2102)
T PLN03200         11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEED   90 (2102)
T ss_pred             hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH
Confidence            345689999999876  8899999999999999999999999997 7999999999999999999999999999999999


Q ss_pred             hhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc---hhHHHHhhcCCCcHHHHHHHhccCCH---HHHHHHHH
Q 039015          454 SKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASI---EEYRKLIGENPEAIPALVDMVRDGTD---RSKKNALV  527 (685)
Q Consensus       454 ~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~---~~~~~~i~~~~g~i~~Lv~lL~~~~~---~~~~~A~~  527 (685)
                      +|..|+..|+|++|+.+|++| +.+.+++|+++|++|+.+   ++++..|+...|+||.|++++++++.   -.+..|+.
T Consensus        91 nk~~Iv~~GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~  169 (2102)
T PLN03200         91 LRVKVLLGGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTG  169 (2102)
T ss_pred             HHHHHHHcCChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHH
Confidence            999999999999999999999 999999999999999987   55676766559999999999999863   23456789


Q ss_pred             HHHHhcCCCCcHHH-HHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-hhcHHHHHhcCChHHHHHHhhcCCChhH
Q 039015          528 AIFGLLMHSGNHWR-FLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK-LDGTIAILHHGALDMIMKILDSCTSRAG  605 (685)
Q Consensus       528 aL~nLs~~~~n~~~-iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~-~~~~~~i~~~g~v~~Lv~lL~~~~s~~~  605 (685)
                      +|+|||.+.+++.+ ++++|+||.|+.+| +++++.++..|+.+|.+++.+ ++++..+++.|+||.|+++|++++++.+
T Consensus       170 AL~nLs~~~en~~~~IIeaGaVp~LV~LL-sS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~V  248 (2102)
T PLN03200        170 ALRNLCGSTDGFWSATLEAGGVDILVKLL-SSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSV  248 (2102)
T ss_pred             HHHHHhcCccchHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHH
Confidence            99999999998865 58999999999999 567889999999999988875 7799999999999999999987746689


Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCCh---------HHHHHHHHHHHHHHH
Q 039015          606 KEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSS---------RASKKASALIRILHE  662 (685)
Q Consensus       606 ~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~---------~~k~~A~~lL~~l~~  662 (685)
                      +++|+++|.+||.++ ++.+..+.+ .|+++.|+.++.+++.         ..++.|.|.|..+.+
T Consensus       249 RE~AA~AL~nLAs~s-~e~r~~Iv~-aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg  312 (2102)
T PLN03200        249 RAEAAGALEALSSQS-KEAKQAIAD-AGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG  312 (2102)
T ss_pred             HHHHHHHHHHHhcCC-HHHHHHHHH-CCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence            999999999999876 455666666 8999999999986542         347889998888766

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.95  E-value=4.3e-26  Score=277.40  Aligned_cols=282  Identities=17%  Similarity=0.245  Sum_probs=245.1

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHH
Q 039015          378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSM  457 (685)
Q Consensus       378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~  457 (685)
                      .+.++.|+++|.+++.+.|..|++.|++++.+++++|..++++|+||.|+++|.+++..++++|+++|.||+.++++...
T Consensus       445 ~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~  524 (2102)
T PLN03200        445 REGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRA  524 (2102)
T ss_pred             cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence            45799999999999999999999999999998889999999999999999999999999999999999999998877555


Q ss_pred             HH-hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHH-------------------------------------HH
Q 039015          458 VV-ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYR-------------------------------------KL  499 (685)
Q Consensus       458 i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~-------------------------------------~~  499 (685)
                      ++ +.|++++|+++|+++ +.+.+..|+++|++|+...+..                                     ..
T Consensus       525 iV~~aGAIppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~  603 (2102)
T PLN03200        525 CVESAGAVPALLWLLKNG-GPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVRE  603 (2102)
T ss_pred             HHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHH
Confidence            44 789999999999999 9999999999999996432211                                     11


Q ss_pred             hhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc--
Q 039015          500 IGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS-GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE--  576 (685)
Q Consensus       500 i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~--  576 (685)
                      .....|+++.|+++|++++...++.|+++|.|++.+. +++..++..|+|++|+.+| ++.+.+.+.+++.+|.+|+.  
T Consensus       604 g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LL-ss~~~~v~keAA~AL~nL~~~~  682 (2102)
T PLN03200        604 GSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLL-TNNTEAVATQSARALAALSRSI  682 (2102)
T ss_pred             hhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHH-hcCChHHHHHHHHHHHHHHhCC
Confidence            1123689999999999999999999999999999654 5788899999999999999 56777889999999999985  


Q ss_pred             ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHH
Q 039015          577 KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASAL  656 (685)
Q Consensus       577 ~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~l  656 (685)
                      .+..+..+++.|+|+.|+++|++. +...++.|+.+|.+++.++  +....+.. .|+++.|+.++++|+++.|+.|++.
T Consensus       683 ~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALanLl~~~--e~~~ei~~-~~~I~~Lv~lLr~G~~~~k~~Aa~A  758 (2102)
T PLN03200        683 KENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALANLLSDP--EVAAEALA-EDIILPLTRVLREGTLEGKRNAARA  758 (2102)
T ss_pred             CHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHHHHHcCc--hHHHHHHh-cCcHHHHHHHHHhCChHHHHHHHHH
Confidence            455566788999999999999987 9999999999999999984  34455555 6889999999999999999999888


Q ss_pred             HHHHHHhhc
Q 039015          657 IRILHEFYE  665 (685)
Q Consensus       657 L~~l~~~~~  665 (685)
                      |..|.+...
T Consensus       759 L~~L~~~~~  767 (2102)
T PLN03200        759 LAQLLKHFP  767 (2102)
T ss_pred             HHHHHhCCC
Confidence            877766543

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=3.7e-25  Score=222.72  Aligned_cols=277  Identities=21%  Similarity=0.245  Sum_probs=252.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV  459 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~  459 (685)
                      .+..+.+.-++.+..+|..++..|.++.. ..+||+.++.+|++|.||.+|++.|.++|..+.+++.|++.+..+|+.++
T Consensus       168 aL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~La  246 (550)
T KOG4224|consen  168 ALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILA  246 (550)
T ss_pred             chhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHH
Confidence            35566665577788899999999999995 88999999999999999999999999999999999999999999999999


Q ss_pred             hcC--cHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 039015          460 ESG--GLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG  537 (685)
Q Consensus       460 ~~g--~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~  537 (685)
                      +.|  .++.||.++..| ++.++-.|.-+|.+|+.+.+|...|.+ .|.+|.+|++|+++........+.++.|++.++.
T Consensus       247 qaep~lv~~Lv~Lmd~~-s~kvkcqA~lALrnlasdt~Yq~eiv~-ag~lP~lv~Llqs~~~plilasVaCIrnisihpl  324 (550)
T KOG4224|consen  247 QAEPKLVPALVDLMDDG-SDKVKCQAGLALRNLASDTEYQREIVE-AGSLPLLVELLQSPMGPLILASVACIRNISIHPL  324 (550)
T ss_pred             hcccchHHHHHHHHhCC-ChHHHHHHHHHHhhhcccchhhhHHHh-cCCchHHHHHHhCcchhHHHHHHHHHhhcccccC
Confidence            877  999999999999 999999999999999999999999999 9999999999998887777788899999999999


Q ss_pred             cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHH
Q 039015          538 NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE-KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLAL  616 (685)
Q Consensus       538 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L  616 (685)
                      |-..++++|.+.+||.+|.-.++++++.+|..+|+|||. ...++..|.++|+||.+.+++.++ +-.+++.-.+++..|
T Consensus       325 Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~L  403 (550)
T KOG4224|consen  325 NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQL  403 (550)
T ss_pred             cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHH
Confidence            999999999999999999766788899999999999988 688999999999999999999988 888899888889999


Q ss_pred             hccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015          617 CINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF  663 (685)
Q Consensus       617 ~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~  663 (685)
                      +.+  +..+..+.. .|++|.|..++.+.+...+.+|++.|-.|+..
T Consensus       404 al~--d~~k~~lld-~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~  447 (550)
T KOG4224|consen  404 ALN--DNDKEALLD-SGIIPILIPWTGSESEEVRGNAAAALINLSSD  447 (550)
T ss_pred             Hhc--cccHHHHhh-cCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence            988  445667776 99999999999999999998888887777653

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=7.2e-25  Score=220.63  Aligned_cols=279  Identities=25%  Similarity=0.335  Sum_probs=251.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHh
Q 039015          381 ANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVE  460 (685)
Q Consensus       381 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~  460 (685)
                      ++.|+..+.+...+.|..++.+|.+|+.. .+||..++..|++.++.++-+++|..+|.+|..+|.|++...+||..++.
T Consensus       128 l~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~  206 (550)
T KOG4224|consen  128 LDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVH  206 (550)
T ss_pred             hHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhc
Confidence            45566666667778999999999999974 79999999999999999988899999999999999999999999999999


Q ss_pred             cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCC--cHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 039015          461 SGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPE--AIPALVDMVRDGTDRSKKNALVAIFGLLMHSGN  538 (685)
Q Consensus       461 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g--~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n  538 (685)
                      +|++|.||.+++.+ +.+++..++.++.+++.+...|..+.+ .|  .||.||+++.++++++|-.|..||.||+.+.+-
T Consensus       207 aG~lpvLVsll~s~-d~dvqyycttaisnIaVd~~~Rk~Laq-aep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y  284 (550)
T KOG4224|consen  207 AGGLPVLVSLLKSG-DLDVQYYCTTAISNIAVDRRARKILAQ-AEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY  284 (550)
T ss_pred             cCCchhhhhhhccC-ChhHHHHHHHHhhhhhhhHHHHHHHHh-cccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchh
Confidence            99999999999999 999999999999999999999998887 66  999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 039015          539 HWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCI  618 (685)
Q Consensus       539 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~  618 (685)
                      ...++++|.+|.++++| .++.....-..++++.|++-+|-+...|.++|.+..||.+|+.+.+.+.+-+|+.+|++|+.
T Consensus       285 q~eiv~ag~lP~lv~Ll-qs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa  363 (550)
T KOG4224|consen  285 QREIVEAGSLPLLVELL-QSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA  363 (550)
T ss_pred             hhHHHhcCCchHHHHHH-hCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence            99999999999999999 56666777888999999999999999999999999999999988677799999999999998


Q ss_pred             cCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc
Q 039015          619 NGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYE  665 (685)
Q Consensus       619 ~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~  665 (685)
                      .... -+..+.. .|++|+|.+|+.+|.-..+....+.+..|.-...
T Consensus       364 sse~-n~~~i~e-sgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~  408 (550)
T KOG4224|consen  364 SSEH-NVSVIRE-SGAIPKLIELLLDGPVSVQSEISACIAQLALNDN  408 (550)
T ss_pred             hhhh-hhHHHhh-cCchHHHHHHHhcCChhHHHHHHHHHHHHHhccc
Confidence            6533 3445544 8999999999999998888877777777665443

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.9e-24  Score=232.59  Aligned_cols=281  Identities=20%  Similarity=0.261  Sum_probs=244.7

Q ss_pred             HHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcch-hH
Q 039015          379 LLANFISDRLLE-GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS-KS  456 (685)
Q Consensus       379 ~~i~~Lv~~L~s-~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~  456 (685)
                      +.++.+|..|.. .++..|..|+++|.++|.++.++...++++|++|.++.+|.+++..+++.|+|+|.|++.+... |.
T Consensus       109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd  188 (514)
T KOG0166|consen  109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD  188 (514)
T ss_pred             CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence            568999999974 4589999999999999999999999999999999999999999999999999999999998865 88


Q ss_pred             HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 039015          457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS  536 (685)
Q Consensus       457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~  536 (685)
                      .+.+.|++++|+.++..........+++|+|.||+.+...-..+.....++|.|..++.+.++++..+|++||..|+-+.
T Consensus       189 ~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~  268 (514)
T KOG0166|consen  189 YVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS  268 (514)
T ss_pred             HHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence            88999999999999998834478899999999999887544444443568999999999999999999999999999655


Q ss_pred             -CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcH-HHHHhcCChHHHHHHhhcCCChhHHHHHHHHHH
Q 039015          537 -GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGT-IAILHHGALDMIMKILDSCTSRAGKEYCVSLLL  614 (685)
Q Consensus       537 -~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~-~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~  614 (685)
                       +.-+.++++|+++.|+.+| ...+..+...|+.++.|++...+.. ..+.+.|++|.|..++...+....+..|++++.
T Consensus       269 ne~iq~vi~~gvv~~LV~lL-~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iS  347 (514)
T KOG0166|consen  269 NEKIQMVIDAGVVPRLVDLL-GHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTIS  347 (514)
T ss_pred             hHHHHHHHHccchHHHHHHH-cCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHH
Confidence             4566778999999999999 5566778889999999998865554 557999999999999885436668899999999


Q ss_pred             HHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 039015          615 ALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHE  662 (685)
Q Consensus       615 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~  662 (685)
                      |++.++.+++..++.  +|++|.|+.+++++.-+.|+.|+|.+..+..
T Consensus       348 NItAG~~~qiqaVid--a~l~p~Li~~l~~~ef~~rKEAawaIsN~ts  393 (514)
T KOG0166|consen  348 NITAGNQEQIQAVID--ANLIPVLINLLQTAEFDIRKEAAWAISNLTS  393 (514)
T ss_pred             HhhcCCHHHHHHHHH--cccHHHHHHHHhccchHHHHHHHHHHHhhcc
Confidence            999988767665554  7999999999999999999999998887644

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=5.5e-21  Score=206.02  Aligned_cols=287  Identities=18%  Similarity=0.221  Sum_probs=250.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCH-HHHHHHHHHhhccccCcchhHH
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDS-STQENAIAALLNLSKHCKSKSM  457 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~-~~~~~A~~aL~nLs~~~~~k~~  457 (685)
                      ++++.+++.|.+++.+++.+|+++|.+++.+++..|..+...|++++|+.++...+. ....++.|+|.||+.+..-...
T Consensus       152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~  231 (514)
T KOG0166|consen  152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPP  231 (514)
T ss_pred             CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCc
Confidence            357889999999999999999999999999999999999999999999999988766 7899999999999988743222


Q ss_pred             -HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 039015          458 -VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS  536 (685)
Q Consensus       458 -i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~  536 (685)
                       -.-..+++.|..++.+. +.++...|+++|.+|+....-+..+.-+.|++|.||++|.+.++.++..|+.++.|++...
T Consensus       232 ~~~v~~iLp~L~~ll~~~-D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~  310 (514)
T KOG0166|consen  232 FDVVAPILPALLRLLHST-DEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGS  310 (514)
T ss_pred             HHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeecc
Confidence             23467899999999999 9999999999999999777555555544999999999999999999999999999999877


Q ss_pred             Cc-HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHh-cChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHH
Q 039015          537 GN-HWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLA-EKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLL  614 (685)
Q Consensus       537 ~n-~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La-~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~  614 (685)
                      +. ...++..|++|.|..+|..++...++.+|++++.|++ ++++...++.++|.+|.|+.+|..+ ....+..|++++.
T Consensus       311 d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIs  389 (514)
T KOG0166|consen  311 DEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAIS  389 (514)
T ss_pred             HHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHH
Confidence            75 4566899999999999954666678999999999995 5677888999999999999999998 8999999999999


Q ss_pred             HHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcccC
Q 039015          615 ALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYERHS  668 (685)
Q Consensus       615 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~~~~  668 (685)
                      |++..+.++-...+.+ .|++++|..++.-.+.+.-..+...+..+-+..+...
T Consensus       390 N~ts~g~~~qi~yLv~-~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~  442 (514)
T KOG0166|consen  390 NLTSSGTPEQIKYLVE-QGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEK  442 (514)
T ss_pred             hhcccCCHHHHHHHHH-cCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhc
Confidence            9999988887788887 8999999999976778888888888888877765443

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.86  E-value=2.7e-21  Score=193.45  Aligned_cols=276  Identities=19%  Similarity=0.221  Sum_probs=233.7

Q ss_pred             HHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcch-hH
Q 039015          379 LLANFISDRLL-EGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS-KS  456 (685)
Q Consensus       379 ~~i~~Lv~~L~-s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~  456 (685)
                      +.++.+++.+. ....-.+.+|+++|.+++.+.......++++|++|.++++|.+.+.++++.++|+|.|++.+.+. |.
T Consensus       114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD  193 (526)
T COG5064         114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRD  193 (526)
T ss_pred             cccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHH
Confidence            34777888884 44445688999999999997777777889999999999999999999999999999999998866 88


Q ss_pred             HHHhcCcHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCch---hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 039015          457 MVVESGGLDFIVDMVKKGL-KVEARQHAAATLFYIASIE---EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGL  532 (685)
Q Consensus       457 ~i~~~g~i~~Lv~lL~~~~-~~e~~~~Aa~~L~~Ls~~~---~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL  532 (685)
                      .+.+.|++++++.+|.+.. +.....++.++|.||+...   ..-..|..   ++|.|.+|+-+.++++..+|+|||.-|
T Consensus       194 ~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq---alpiL~KLiys~D~evlvDA~WAiSYl  270 (526)
T COG5064         194 YVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ---ALPILAKLIYSRDPEVLVDACWAISYL  270 (526)
T ss_pred             HHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH---HHHHHHHHHhhcCHHHHHHHHHHHHHh
Confidence            8889999999999998652 3477899999999999765   23444544   899999999999999999999999999


Q ss_pred             cCCCC-cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcH-HHHHhcCChHHHHHHhhcCCChhHHHHHH
Q 039015          533 LMHSG-NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGT-IAILHHGALDMIMKILDSCTSRAGKEYCV  610 (685)
Q Consensus       533 s~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~-~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~  610 (685)
                      +-.+. -...+++.|..+.|+++| ++++..+...|+....|+....+.+ ..|.+.|+++.+-.+|.+. ....+..|+
T Consensus       271 sDg~~E~i~avld~g~~~RLvElL-s~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaC  348 (526)
T COG5064         271 SDGPNEKIQAVLDVGIPGRLVELL-SHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEAC  348 (526)
T ss_pred             ccCcHHHHHHHHhcCCcHHHHHHh-cCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcCh-hhhhhhhhh
Confidence            97665 456678999999999999 7788888999999999998866555 4568999999999999877 778999999


Q ss_pred             HHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 039015          611 SLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILH  661 (685)
Q Consensus       611 ~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~  661 (685)
                      +.+.++..++.++...++.  .+++|+|+.+++.-.-++|+.|-|.+....
T Consensus       349 WTiSNITAGnteqiqavid--~nliPpLi~lls~ae~k~kKEACWAisNat  397 (526)
T COG5064         349 WTISNITAGNTEQIQAVID--ANLIPPLIHLLSSAEYKIKKEACWAISNAT  397 (526)
T ss_pred             eeecccccCCHHHHHHHHh--cccchHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999998777665554  789999999999998888877776665543

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.81  E-value=8.6e-18  Score=190.91  Aligned_cols=281  Identities=20%  Similarity=0.276  Sum_probs=227.2

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHH
Q 039015          378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSM  457 (685)
Q Consensus       378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~  457 (685)
                      ++.+..|+..|.+++.+....++..|+.|+. ..+|+..+.+.|+||.|++++.+++..++..|+.+|+|||.+++.|..
T Consensus       289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~  367 (708)
T PF05804_consen  289 KGIVSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQ  367 (708)
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            4568999999999999999999999999997 678999999999999999999999999999999999999999999999


Q ss_pred             HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccC-CHHHHHHHHHHHHHhcCCC
Q 039015          458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDG-TDRSKKNALVAIFGLLMHS  536 (685)
Q Consensus       458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~  536 (685)
                      |+..|++|.|+.+|..+   ..+..+..+|++||.++++|..+.. .+++|.|++++-++ +.+....++.++.||+.+.
T Consensus       368 mV~~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~~r~~f~~-TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~  443 (708)
T PF05804_consen  368 MVSLGLIPKLVELLKDP---NFREVALKILYNLSMDDEARSMFAY-TDCIPQLMQMLLENSEEEVQLELIALLINLALNK  443 (708)
T ss_pred             HHHCCCcHHHHHHhCCC---chHHHHHHHHHHhccCHhhHHHHhh-cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH
Confidence            99999999999999866   4667799999999999999999988 78999999987554 4555556677777777777


Q ss_pred             CcHHHHHhcCChHHHHHHhc-------------------------------------cCCChhHHHHHHHHHH-------
Q 039015          537 GNHWRFLAAGAVPLLLNLLT-------------------------------------SSDSEELITDSLAVLA-------  572 (685)
Q Consensus       537 ~n~~~iv~~G~v~~Lv~lL~-------------------------------------~~~~~~~~~~al~~L~-------  572 (685)
                      .|...+++.|+++.|++...                                     .+++++..-+++++|+       
T Consensus       444 rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~l  523 (708)
T PF05804_consen  444 RNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDL  523 (708)
T ss_pred             HHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCc
Confidence            66666666555555443211                                     1123334444444444       


Q ss_pred             -------------------------------------HHhcChhcHHHHHhcCChHHHHHHhhcCC-ChhHHHHHHHHHH
Q 039015          573 -------------------------------------TLAEKLDGTIAILHHGALDMIMKILDSCT-SRAGKEYCVSLLL  614 (685)
Q Consensus       573 -------------------------------------~La~~~~~~~~i~~~g~v~~Lv~lL~~~~-s~~~~e~a~~~L~  614 (685)
                                                           .+|.++..+..+.++|.++.|+++|+..+ +.+..-..+-++.
T Consensus       524 d~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~  603 (708)
T PF05804_consen  524 DWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFY  603 (708)
T ss_pred             CHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHH
Confidence                                                 44456666667777777899999888652 4566667788888


Q ss_pred             HHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc
Q 039015          615 ALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYE  665 (685)
Q Consensus       615 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~  665 (685)
                      ++..+  +..+..+.++.++...|+.++++.++.+++-|...|-++..+.+
T Consensus       604 ~ll~h--~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~  652 (708)
T PF05804_consen  604 QLLFH--EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE  652 (708)
T ss_pred             HHHcC--hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence            88888  56677887778999999999999999999999999999988753

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.80  E-value=2e-18  Score=173.06  Aligned_cols=278  Identities=17%  Similarity=0.178  Sum_probs=235.7

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCC--HHHHHHHHHHhhccccCc---c
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKD--SSTQENAIAALLNLSKHC---K  453 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~--~~~~~~A~~aL~nLs~~~---~  453 (685)
                      ++++.++++|.+++.+++.+|+++|.+++-.++..|..+.+.|++.+++.+|.++.  ..+..++.|.|.||+...   .
T Consensus       157 ~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P  236 (526)
T COG5064         157 GAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPP  236 (526)
T ss_pred             CchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCC
Confidence            35899999999999999999999999999988899999999999999999998754  488999999999998653   2


Q ss_pred             hhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 039015          454 SKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLL  533 (685)
Q Consensus       454 ~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs  533 (685)
                      +-..|  .-++|.|..++..- ++++...|++++.+|+..+.-+..+.-..|+.+.||++|.+++.....-|+..+.|+.
T Consensus       237 ~w~~i--sqalpiL~KLiys~-D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIV  313 (526)
T COG5064         237 DWSNI--SQALPILAKLIYSR-DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIV  313 (526)
T ss_pred             chHHH--HHHHHHHHHHHhhc-CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCee
Confidence            33333  34689999999988 9999999999999999988555544444899999999999999888999999999999


Q ss_pred             CCCC-cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHH-hcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHH
Q 039015          534 MHSG-NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATL-AEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVS  611 (685)
Q Consensus       534 ~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L-a~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~  611 (685)
                      ...+ --+.++..|+++.+..+| +++...++.+|++.+.|+ |++.+...++.+++-+|.|+.+|... .-..+..|++
T Consensus       314 TG~D~QTqviI~~G~L~a~~~lL-s~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACW  391 (526)
T COG5064         314 TGSDDQTQVIINCGALKAFRSLL-SSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACW  391 (526)
T ss_pred             ecCccceehheecccHHHHHHHh-cChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHH
Confidence            7766 456678999999999999 677789999999999999 55677888899999999999999887 7889999999


Q ss_pred             HHHHHhccCc--HHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 039015          612 LLLALCINGG--ANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHE  662 (685)
Q Consensus       612 ~L~~L~~~~~--~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~  662 (685)
                      ++.+...++.  ++....+.. .|++.+|..++.-.+.++-+-+...++.+-+
T Consensus       392 AisNatsgg~~~PD~iryLv~-qG~IkpLc~~L~~~dNkiiev~LD~~eniLk  443 (526)
T COG5064         392 AISNATSGGLNRPDIIRYLVS-QGFIKPLCDLLDVVDNKIIEVALDAIENILK  443 (526)
T ss_pred             HHHhhhccccCCchHHHHHHH-ccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence            9999987652  455667776 8999999999988777766666555555433

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.80  E-value=1.4e-17  Score=189.12  Aligned_cols=255  Identities=20%  Similarity=0.263  Sum_probs=216.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhc
Q 039015          393 SEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVK  472 (685)
Q Consensus       393 ~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~  472 (685)
                      ......+++.|.+++. +..+...+.+.|.|+.|+++|++++.++...+++.|.+||.+.+||..|.+.|+++.|++++.
T Consensus       263 eqLlrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~  341 (708)
T PF05804_consen  263 EQLLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLP  341 (708)
T ss_pred             HHHHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhc
Confidence            3455578888999996 889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHH
Q 039015          473 KGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLL  552 (685)
Q Consensus       473 ~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv  552 (685)
                      .+ +.+.+..+..+|+|||++++.|..+.. .|+||.|+.+|.+++  .+..++.+|+|||.+++++..+...+++|.++
T Consensus       342 s~-~~~l~~~aLrlL~NLSfd~~~R~~mV~-~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~  417 (708)
T PF05804_consen  342 SE-NEDLVNVALRLLFNLSFDPELRSQMVS-LGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLM  417 (708)
T ss_pred             CC-CHHHHHHHHHHHHHhCcCHHHHHHHHH-CCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHH
Confidence            98 899999999999999999999999999 999999999998754  44679999999999999999999999999999


Q ss_pred             HHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHH-HhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhc
Q 039015          553 NLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMK-ILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKS  631 (685)
Q Consensus       553 ~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~-lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~  631 (685)
                      ++|...++..+...+++++.|||.++.+...+++.+|++.|++ .++.. +    ...+.++.|++.+.++ .....   
T Consensus       418 ~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~-D----~lLlKlIRNiS~h~~~-~k~~f---  488 (708)
T PF05804_consen  418 QMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTR-D----PLLLKLIRNISQHDGP-LKELF---  488 (708)
T ss_pred             HHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcc-c----HHHHHHHHHHHhcCch-HHHHH---
Confidence            9986666677777889999999999999999999889999999 44432 2    2355799999999754 23322   


Q ss_pred             CCcHHHHHHHHhcCC-hHHHHHHHHHHHHHH
Q 039015          632 PSLMGSLYSLLSQGS-SRASKKASALIRILH  661 (685)
Q Consensus       632 ~g~i~~L~~Ll~~g~-~~~k~~A~~lL~~l~  661 (685)
                      .+.+..|..++.+++ +...-.+-.+|..|.
T Consensus       489 ~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~  519 (708)
T PF05804_consen  489 VDFIGDLAKIVSSGDSEEFVVECLGILANLT  519 (708)
T ss_pred             HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcc
Confidence            346888888888874 334444555555543

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=99.73  E-value=2.1e-18  Score=141.09  Aligned_cols=72  Identities=42%  Similarity=0.846  Sum_probs=63.3

Q ss_pred             CCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcC
Q 039015          277 TPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNG  348 (685)
Q Consensus       277 ~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~  348 (685)
                      +|++|.||||+++|.|||+++|||||||.||++|+..++.+||.|++.++..+++||..|++.|++|+.+|.
T Consensus         1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~   72 (73)
T PF04564_consen    1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK   72 (73)
T ss_dssp             SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred             CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence            588999999999999999999999999999999999888999999999999999999999999999999875

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.71  E-value=2.2e-15  Score=167.58  Aligned_cols=286  Identities=19%  Similarity=0.188  Sum_probs=232.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc---chh
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC---KSK  455 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~---~~k  455 (685)
                      ..++..+.+|.+.++..|-.|+..|+.+|+.+...|..+.+.|+||.||.+|.+.+.++|.+|+.+|.||+...   +||
T Consensus       233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK  312 (717)
T KOG1048|consen  233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK  312 (717)
T ss_pred             cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence            45778899999999999999999999999999999999999999999999999999999999999999998554   579


Q ss_pred             HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhc---------------------------------
Q 039015          456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGE---------------------------------  502 (685)
Q Consensus       456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~---------------------------------  502 (685)
                      ..|.+.++|+.++++|+...+.|++++.+++|+||+++|..|..|..                                 
T Consensus       313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~  392 (717)
T KOG1048|consen  313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFR  392 (717)
T ss_pred             hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeee
Confidence            99999999999999999744899999999999999999877766643                                 


Q ss_pred             ----------------------CCCcHHHHHHHhcc--------------------------------------------
Q 039015          503 ----------------------NPEAIPALVDMVRD--------------------------------------------  516 (685)
Q Consensus       503 ----------------------~~g~i~~Lv~lL~~--------------------------------------------  516 (685)
                                            ..|.|..|+..+++                                            
T Consensus       393 n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~  472 (717)
T KOG1048|consen  393 NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARL  472 (717)
T ss_pred             hhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccc
Confidence                                  44556666555541                                            


Q ss_pred             ----------------------------------------------------------CCHHHHHHHHHHHHHhcCCCC-
Q 039015          517 ----------------------------------------------------------GTDRSKKNALVAIFGLLMHSG-  537 (685)
Q Consensus       517 ----------------------------------------------------------~~~~~~~~A~~aL~nLs~~~~-  537 (685)
                                                                                .++.+.++++.||.||+.... 
T Consensus       473 ~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~  552 (717)
T KOG1048|consen  473 PGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT  552 (717)
T ss_pred             ccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc
Confidence                                                                      122333455556666653322 


Q ss_pred             ----cHHHH-HhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCC-----hhHHH
Q 039015          538 ----NHWRF-LAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTS-----RAGKE  607 (685)
Q Consensus       538 ----n~~~i-v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s-----~~~~e  607 (685)
                          .+..+ .+..+.++|+++| ..++..++..+.++|.||+.+..++..|. .++++.|+..|..+..     .++.-
T Consensus       553 ~~~~~~~~v~~kekgl~~l~~ll-~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~  630 (717)
T KOG1048|consen  553 WSEYMRGAVFRKEKGLPPLVELL-RNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVR  630 (717)
T ss_pred             chhHHHhhhhhhccCccHHHHHH-hcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHH
Confidence                23333 5677899999999 55677899999999999999999999987 6789999999986533     56777


Q ss_pred             HHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcC-ChHHHHHHHHHHHHHHHhhcccC
Q 039015          608 YCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQG-SSRASKKASALIRILHEFYERHS  668 (685)
Q Consensus       608 ~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g-~~~~k~~A~~lL~~l~~~~~~~~  668 (685)
                      ..+.+|+++...+...++..+ . .+.++.|+.|..+. +++.-+.|..+|..|..+.+-++
T Consensus       631 ~vc~tl~niv~~~~~nAkdl~-~-~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh~  690 (717)
T KOG1048|consen  631 AVCHTLNNIVRKNVLNAKDLL-E-IKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKELHF  690 (717)
T ss_pred             HHHHhHHHHHHHhHHHHHHHH-h-ccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            889999999987756555444 3 78899999999886 56889999999999998877443

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.65  E-value=8.9e-14  Score=139.94  Aligned_cols=288  Identities=15%  Similarity=0.206  Sum_probs=234.6

Q ss_pred             HHHHHHh--cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccCcchh---
Q 039015          382 NFISDRL--LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLSKHCKSK---  455 (685)
Q Consensus       382 ~~Lv~~L--~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~k---  455 (685)
                      ..++..|  ++.+.+.-...+..++.-|-.++.||+.|++.|+.|.+...|.. +...+...+.++++-|..+++-|   
T Consensus       148 ~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~f  227 (461)
T KOG4199|consen  148 AVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVF  227 (461)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeec
Confidence            3445555  45677778888889999888899999999999999999976655 34468888899999998877543   


Q ss_pred             -------HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHH----HHHH
Q 039015          456 -------SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDR----SKKN  524 (685)
Q Consensus       456 -------~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~----~~~~  524 (685)
                             ..|+..|++..|++.|+.+.++.....+..+|..|+..++.+..|.+ .|++..|++++.+.+..    ..+.
T Consensus       228 g~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e-~GGl~tl~~~i~d~n~~~~r~l~k~  306 (461)
T KOG4199|consen  228 GQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAE-SGGLDTLLRCIDDSNEQGNRTLAKT  306 (461)
T ss_pred             chhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHhhhchhhHHHHHHH
Confidence                   46678889999999999988899999999999999999999999999 99999999999875432    4467


Q ss_pred             HHHHHHHhcCCCCcHHHHHhcCChHHHHHHhcc-CCChhHHHHHHHHHHHHhc-ChhcHHHHHhcCChHHHHHHhhcC-C
Q 039015          525 ALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTS-SDSEELITDSLAVLATLAE-KLDGTIAILHHGALDMIMKILDSC-T  601 (685)
Q Consensus       525 A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~-~~~~~~~~~al~~L~~La~-~~~~~~~i~~~g~v~~Lv~lL~~~-~  601 (685)
                      ++..|..|+.++.++..+++.|+.+.++.++.. .+++.+..++++++.-|+- .|++...+++.|+-...++-|+.. .
T Consensus       307 ~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~  386 (461)
T KOG4199|consen  307 CLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPV  386 (461)
T ss_pred             HHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcH
Confidence            888999999999999999999999999998753 4578999999999999976 588888899999988888877754 3


Q ss_pred             ChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHH--HhhcccCCCCCC
Q 039015          602 SRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILH--EFYERHSSGSTT  673 (685)
Q Consensus       602 s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~--~~~~~~~~~~~~  673 (685)
                      ...++.+|+.++.|+..++.+. ...+..  .+++.|.......++.....|.+.|+-|.  .+....|.|.+.
T Consensus       387 ~a~vQrnac~~IRNiv~rs~~~-~~~~l~--~GiE~Li~~A~~~h~tce~~akaALRDLGc~v~lre~wtg~~~  457 (461)
T KOG4199|consen  387 AAQVQRNACNMIRNIVVRSAEN-RTILLA--NGIEKLIRTAKANHETCEAAAKAALRDLGCDVYLREEWTGAEK  457 (461)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhc-cchHHh--ccHHHHHHHHHhcCccHHHHHHHHHHhcCcchhhHHHhccccc
Confidence            4567889999999999987544 444443  44677777777777777788888888764  344567777543

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.63  E-value=4.4e-14  Score=143.52  Aligned_cols=236  Identities=18%  Similarity=0.225  Sum_probs=193.4

Q ss_pred             HHHHHHHHhc-CCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015          380 LANFISDRLL-EGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV  458 (685)
Q Consensus       380 ~i~~Lv~~L~-s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i  458 (685)
                      .++.|+..|+ +.++..+..|+.++.+.+. .+.++..+.+.|+++.+..+|.++++.+++.|+.+|.|+|.+.+|+..|
T Consensus        13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I   91 (254)
T PF04826_consen   13 ELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI   91 (254)
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence            4789999997 4689999999999999886 7899999999999999999999999999999999999999999998887


Q ss_pred             HhcCcHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 039015          459 VESGGLDFIVDMVKK-GLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG  537 (685)
Q Consensus       459 ~~~g~i~~Lv~lL~~-~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~  537 (685)
                      -.  .++.+.+.+.. ..+.+++..+..+|.+|+..+++...+..   .++.++.+|..|+...+..++++|.|||.++.
T Consensus        92 k~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~---~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~  166 (254)
T PF04826_consen   92 KM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN---YIPDLLSLLSSGSEKTKVQVLKVLVNLSENPD  166 (254)
T ss_pred             HH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh---hHHHHHHHHHcCChHHHHHHHHHHHHhccCHH
Confidence            43  57777775544 34678999999999999999999888865   79999999999999999999999999999999


Q ss_pred             cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHH-HH-hcCChHHHHHHhhcCCChhHHHHHHHHHHH
Q 039015          538 NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIA-IL-HHGALDMIMKILDSCTSRAGKEYCVSLLLA  615 (685)
Q Consensus       538 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~-i~-~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~  615 (685)
                      +...++.++++..++.++..+.+.++...++.++.||..+-..... +. ....-..|.-+++.      .+..+.-|..
T Consensus       167 ~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e------~~~~~~~l~~  240 (254)
T PF04826_consen  167 MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGE------SSQLAKKLQA  240 (254)
T ss_pred             HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHcc------HHHHHHHHHH
Confidence            9999999999999999997666788999999999999775332222 22 22234555555543      2244455556


Q ss_pred             HhccCcHHHHHH
Q 039015          616 LCINGGANVVAL  627 (685)
Q Consensus       616 L~~~~~~~~~~~  627 (685)
                      |..+.+++++..
T Consensus       241 l~~h~d~ev~~~  252 (254)
T PF04826_consen  241 LANHPDPEVKEQ  252 (254)
T ss_pred             HHcCCCHHHhhh
Confidence            666766665543

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.61  E-value=1.5e-14  Score=166.18  Aligned_cols=263  Identities=19%  Similarity=0.208  Sum_probs=217.8

Q ss_pred             HHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC---------C---CHHHHHHHHHHhhccccCc-chhHHHH-hc
Q 039015          396 KNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS---------K---DSSTQENAIAALLNLSKHC-KSKSMVV-ES  461 (685)
Q Consensus       396 ~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s---------~---~~~~~~~A~~aL~nLs~~~-~~k~~i~-~~  461 (685)
                      ...|+..|-.++. ++++|..+.+.|++..|-.||.-         .   ...++..|..+|.||+..+ .||..+- ..
T Consensus       315 lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~r  393 (2195)
T KOG2122|consen  315 LCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQR  393 (2195)
T ss_pred             hHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhh
Confidence            3478888888886 88999999999998888886642         1   2478999999999999877 5577776 68


Q ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch--hHHHHhhcCCCcHHHHHHH-hccCCHHHHHHHHHHHHHhcCC-CC
Q 039015          462 GGLDFIVDMVKKGLKVEARQHAAATLFYIASIE--EYRKLIGENPEAIPALVDM-VRDGTDRSKKNALVAIFGLLMH-SG  537 (685)
Q Consensus       462 g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~l-L~~~~~~~~~~A~~aL~nLs~~-~~  537 (685)
                      |+++.||..|... ..++...-+.+|.||+=..  ..++.+.+ .|-+..|+.. |++......+..+.|||||+.+ .+
T Consensus       394 gfMeavVAQL~s~-peeL~QV~AsvLRNLSWRAD~nmKkvLrE-~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcte  471 (2195)
T KOG2122|consen  394 GFMEAVVAQLISA-PEELLQVYASVLRNLSWRADSNMKKVLRE-TGSVTALAACALRNKKESTLKAVLSALWNLSAHCTE  471 (2195)
T ss_pred             hHHHHHHHHHhcC-hHHHHHHHHHHHHhccccccccHHHHHHh-hhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccc
Confidence            9999999999998 8899999999999999544  45666666 8999999985 5666678889999999999976 47


Q ss_pred             cHHHHHh-cCChHHHHHHhccC---CChhHHHHHHHHHHHHhc----ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHH
Q 039015          538 NHWRFLA-AGAVPLLLNLLTSS---DSEELITDSLAVLATLAE----KLDGTIAILHHGALDMIMKILDSCTSRAGKEYC  609 (685)
Q Consensus       538 n~~~iv~-~G~v~~Lv~lL~~~---~~~~~~~~al~~L~~La~----~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a  609 (685)
                      |+..|++ -|++..||.+|.-.   ..-.+++.+-+||.|...    ++..|..+.+++-+..|++.|++. +-.+..++
T Consensus       472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiVSNa  550 (2195)
T KOG2122|consen  472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIVSNA  550 (2195)
T ss_pred             cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEeecc
Confidence            9999998 68999999999322   235678889999998754    677788888888899999999998 99999999


Q ss_pred             HHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 039015          610 VSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFY  664 (685)
Q Consensus       610 ~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~  664 (685)
                      +++||||...+++ .++.+-. .|+++.|..|+++.+..+...+++.|++|-.+.
T Consensus       551 CGTLWNLSAR~p~-DQq~LwD-~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  551 CGTLWNLSARSPE-DQQMLWD-DGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             hhhhhhhhcCCHH-HHHHHHh-cccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence            9999999998754 4555555 899999999999999888877777777766655

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.59  E-value=3e-13  Score=136.21  Aligned_cols=271  Identities=15%  Similarity=0.190  Sum_probs=219.0

Q ss_pred             cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC--CCHHHHHHHHHHhhcc-ccCcchhHHHHhcCcHH
Q 039015          389 LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS--KDSSTQENAIAALLNL-SKHCKSKSMVVESGGLD  465 (685)
Q Consensus       389 ~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s--~~~~~~~~A~~aL~nL-s~~~~~k~~i~~~g~i~  465 (685)
                      .+++.....+++..|..+...    +.-+.++.+...++.+|..  ++.++....+..+..- ..|+.||..+++.++++
T Consensus       117 ~~~~~~~l~ksL~al~~lt~~----qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~  192 (461)
T KOG4199|consen  117 ESPNESVLKKSLEAINSLTHK----QPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE  192 (461)
T ss_pred             hCCchhHHHHHHHHHHHhhcC----CcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence            566777888899988888753    4557888889999998865  5667777777766544 46788999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhc---------CCCcHHHHHHHhccC-CHHHHHHHHHHHHHhcCC
Q 039015          466 FIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGE---------NPEAIPALVDMVRDG-TDRSKKNALVAIFGLLMH  535 (685)
Q Consensus       466 ~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~---------~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~  535 (685)
                      .+.+.|.+.....+...+.+++..|..+++.|..+|.         ..|+...|++.++.+ ++.....+..+|..|+..
T Consensus       193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr  272 (461)
T KOG4199|consen  193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR  272 (461)
T ss_pred             HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            9998776432456777889999999888876654432         256788999999875 477888999999999999


Q ss_pred             CCcHHHHHhcCChHHHHHHhccCCC---hhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHH-HhhcCCChhHHHHHHH
Q 039015          536 SGNHWRFLAAGAVPLLLNLLTSSDS---EELITDSLAVLATLAEKLDGTIAILHHGALDMIMK-ILDSCTSRAGKEYCVS  611 (685)
Q Consensus       536 ~~n~~~iv~~G~v~~Lv~lL~~~~~---~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~-lL~~~~s~~~~e~a~~  611 (685)
                      ++.+..+.++|++..|+.++.++..   ..+...++.+|..||+++.++..|++.||.+.++. ++++..+|.+.+.++.
T Consensus       273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a  352 (461)
T KOG4199|consen  273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMA  352 (461)
T ss_pred             HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHH
Confidence            9999999999999999999954333   34567899999999999999999999999999999 5666568999999999


Q ss_pred             HHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCCh--HHHHHHHHHHHHHHHhhc
Q 039015          612 LLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSS--RASKKASALIRILHEFYE  665 (685)
Q Consensus       612 ~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~--~~k~~A~~lL~~l~~~~~  665 (685)
                      ++.-||...+++....+.  .|+-...+.-++....  ..+++|.++++.+-.+..
T Consensus       353 ~i~~l~LR~pdhsa~~ie--~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~  406 (461)
T KOG4199|consen  353 IISILCLRSPDHSAKAIE--AGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSA  406 (461)
T ss_pred             HHHHHHhcCcchHHHHHh--cchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999888766654  6777777777777643  468999999999876643

>smart00504 Ubox Modified RING finger domain

Probab=99.55  E-value=5.7e-15  Score=117.72  Aligned_cols=63  Identities=52%  Similarity=0.981  Sum_probs=60.2

Q ss_pred             CccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHH
Q 039015          280 DFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDW  343 (685)
Q Consensus       280 ~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~  343 (685)
                      +|.||||+++|.|||+++|||+||+.||.+|+.. +.+||.|++.++..++.+|..+++.|++|
T Consensus         1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~   63 (63)
T smart00504        1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW   63 (63)
T ss_pred             CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence            4899999999999999999999999999999988 78999999999988999999999999988

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.51  E-value=9.3e-13  Score=133.85  Aligned_cols=197  Identities=24%  Similarity=0.293  Sum_probs=174.3

Q ss_pred             HHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh
Q 039015          417 LVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE  495 (685)
Q Consensus       417 i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~  495 (685)
                      +.+++-+..|+.+|++ .|+.+++.|+.++.|.+.++.+++.|.+.|+++.+..+|.++ ++.+++.|..+|.||+.+.+
T Consensus         8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~~e   86 (254)
T PF04826_consen    8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDP-NPSVREKALNALNNLSVNDE   86 (254)
T ss_pred             CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCChh
Confidence            4677888999999985 789999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             HHHHhhcCCCcHHHHHHHhccC--CHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHH
Q 039015          496 YRKLIGENPEAIPALVDMVRDG--TDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLAT  573 (685)
Q Consensus       496 ~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~  573 (685)
                      ++..|-.   .|+.+++.+.+.  +..++..++.+|.||+..++.+..+.  +.++.|+.+| ..++..++..++.+|.|
T Consensus        87 n~~~Ik~---~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL-~~G~~~~k~~vLk~L~n  160 (254)
T PF04826_consen   87 NQEQIKM---YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLL-SSGSEKTKVQVLKVLVN  160 (254)
T ss_pred             hHHHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHH-HcCChHHHHHHHHHHHH
Confidence            9999855   688888876654  46788899999999998888777664  4799999999 56678899999999999


Q ss_pred             HhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccC
Q 039015          574 LAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCING  620 (685)
Q Consensus       574 La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~  620 (685)
                      |+.++.....++.+.++..++.++....+......++.+..+|..+-
T Consensus       161 LS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~  207 (254)
T PF04826_consen  161 LSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI  207 (254)
T ss_pred             hccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999998887546777888888888887643

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.43  E-value=1.1e-11  Score=138.43  Aligned_cols=249  Identities=19%  Similarity=0.181  Sum_probs=197.8

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCc--hhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccCc---
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIF--NRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLSKHC---  452 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~--~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~---  452 (685)
                      +.|+.|+.+|.+.+.+++.+|+.+|++|..++..  |+..|.+.|+||.++++|.. .|.++++....+|.|||.++   
T Consensus       275 ggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK  354 (717)
T KOG1048|consen  275 GGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALK  354 (717)
T ss_pred             ccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHH
Confidence            4689999999999999999999999999987766  99999999999999999986 89999999999999998872   


Q ss_pred             ----------------------------------------------------chhHHHHh-cCcHHHHHHHhcC-----C
Q 039015          453 ----------------------------------------------------KSKSMVVE-SGGLDFIVDMVKK-----G  474 (685)
Q Consensus       453 ----------------------------------------------------~~k~~i~~-~g~i~~Lv~lL~~-----~  474 (685)
                                                                          +.|+.|.+ .|.|..|+..+++     .
T Consensus       355 ~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~  434 (717)
T KOG1048|consen  355 MLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSD  434 (717)
T ss_pred             HHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhcc
Confidence                                                                22445553 6788888887751     1


Q ss_pred             CCHHHHHHHHHHHHHhcCchh-----------------------------------------------------------
Q 039015          475 LKVEARQHAAATLFYIASIEE-----------------------------------------------------------  495 (685)
Q Consensus       475 ~~~e~~~~Aa~~L~~Ls~~~~-----------------------------------------------------------  495 (685)
                      .+....++++.+|.||+.--+                                                           
T Consensus       435 ~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~L  514 (717)
T KOG1048|consen  435 LDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWL  514 (717)
T ss_pred             ccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceee
Confidence            134445666666666653211                                                           


Q ss_pred             ------------------------------------------HHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 039015          496 ------------------------------------------YRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLL  533 (685)
Q Consensus       496 ------------------------------------------~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs  533 (685)
                                                                .+..++....+.|.|+++|+.+++.++..++.+|.||+
T Consensus       515 w~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls  594 (717)
T KOG1048|consen  515 WHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLS  594 (717)
T ss_pred             ecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhc
Confidence                                                      12222114567899999999999999999999999999


Q ss_pred             CCCCcHHHHHhcCChHHHHHHhccCC-----ChhHHHHHHHHHHHHh-cChhcHHHHHhcCChHHHHHHhhcCCChhHHH
Q 039015          534 MHSGNHWRFLAAGAVPLLLNLLTSSD-----SEELITDSLAVLATLA-EKLDGTIAILHHGALDMIMKILDSCTSRAGKE  607 (685)
Q Consensus       534 ~~~~n~~~iv~~G~v~~Lv~lL~~~~-----~~~~~~~al~~L~~La-~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e  607 (685)
                      .+..|+..|- .++++-|++.|-...     ++++...++.+|.++. .+..+...+.+.++++.|+.|.++..+++.-+
T Consensus       595 ~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~k  673 (717)
T KOG1048|consen  595 RDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFK  673 (717)
T ss_pred             cCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHH
Confidence            9999998777 889999999995333     3788889999999997 67899999999999999999888766888888


Q ss_pred             HHHHHHHHHhccCcHHHHHHHHh
Q 039015          608 YCVSLLLALCINGGANVVALLVK  630 (685)
Q Consensus       608 ~a~~~L~~L~~~~~~~~~~~l~~  630 (685)
                      .|..+|..|=..  .+..-...+
T Consensus       674 aAs~vL~~lW~y--~eLh~~~kk  694 (717)
T KOG1048|consen  674 AASSVLDVLWQY--KELHFKLKK  694 (717)
T ss_pred             HHHHHHHHHHHH--HHHhhhHhh
Confidence            888888777665  344444443

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.39  E-value=1.2e-10  Score=131.23  Aligned_cols=275  Identities=17%  Similarity=0.161  Sum_probs=214.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV  458 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i  458 (685)
                      ...++|...|.+.++.+|.-+++.|+.++.++......+.+.+.++.++.+|.++|..+...|+.+|.+|+.++.+-..+
T Consensus        77 ~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l  156 (503)
T PF10508_consen   77 QYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQL  156 (503)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHH
Confidence            35688889999999999999999999999866666777888999999999999999999999999999999999888888


Q ss_pred             HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 039015          459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG  537 (685)
Q Consensus       459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~  537 (685)
                      +..+.+..|..++.+. +..+|..+..++.+++... +....+.. .|.++.++..|.+.+.-++.+|+..|..|+..+.
T Consensus       157 ~~~~~~~~L~~l~~~~-~~~vR~Rv~el~v~i~~~S~~~~~~~~~-sgll~~ll~eL~~dDiLvqlnalell~~La~~~~  234 (503)
T PF10508_consen  157 FDSNLLSKLKSLMSQS-SDIVRCRVYELLVEIASHSPEAAEAVVN-SGLLDLLLKELDSDDILVQLNALELLSELAETPH  234 (503)
T ss_pred             hCcchHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCHHHHHHHHh-ccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChh
Confidence            8999999999999987 7889999999999998665 55555555 8999999999999888899999999999999888


Q ss_pred             cHHHHHhcCChHHHHHHhccCCCh-----hHHHHHHHHHHHHhcC-hhcHHHHHhcC-ChHHHHHHhhcCCChhHHHHHH
Q 039015          538 NHWRFLAAGAVPLLLNLLTSSDSE-----ELITDSLAVLATLAEK-LDGTIAILHHG-ALDMIMKILDSCTSRAGKEYCV  610 (685)
Q Consensus       538 n~~~iv~~G~v~~Lv~lL~~~~~~-----~~~~~al~~L~~La~~-~~~~~~i~~~g-~v~~Lv~lL~~~~s~~~~e~a~  610 (685)
                      +...+.+.|+++.|.+++.....+     -+....+....+++.. +.  ..+.... .+..+..++.+. ++..+..|+
T Consensus       235 g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~--~v~~~~p~~~~~l~~~~~s~-d~~~~~~A~  311 (503)
T PF10508_consen  235 GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQ--EVLELYPAFLERLFSMLESQ-DPTIREVAF  311 (503)
T ss_pred             HHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChH--HHHHHHHHHHHHHHHHhCCC-ChhHHHHHH
Confidence            999999999999999999543222     2334455777777774 22  1111111 134444556666 888999999


Q ss_pred             HHHHHHhccCcHHHHHHH-HhcCC----cHHHHHHHHhcCChHHHHHHHHHHHHH
Q 039015          611 SLLLALCINGGANVVALL-VKSPS----LMGSLYSLLSQGSSRASKKASALIRIL  660 (685)
Q Consensus       611 ~~L~~L~~~~~~~~~~~l-~~~~g----~i~~L~~Ll~~g~~~~k~~A~~lL~~l  660 (685)
                      .++..+|..  .+....+ .+..+    ++...-....+|+...|-++-..+..+
T Consensus       312 dtlg~igst--~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~i  364 (503)
T PF10508_consen  312 DTLGQIGST--VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASI  364 (503)
T ss_pred             HHHHHHhCC--HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            999999977  4555555 33222    344444455556666666665555555

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.30  E-value=2e-10  Score=119.42  Aligned_cols=266  Identities=13%  Similarity=0.106  Sum_probs=206.1

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC----CC---HHHHHHHHHHhhccccC
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS----KD---SSTQENAIAALLNLSKH  451 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s----~~---~~~~~~A~~aL~nLs~~  451 (685)
                      +.++.|.+..+|.+.++-.+..+.|.++|..+.++|..+.+.||-..++++|+.    ++   .+...-+...|.|-+.+
T Consensus        87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~  166 (604)
T KOG4500|consen   87 EALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILD  166 (604)
T ss_pred             HHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCC
Confidence            357888888888889999999999999999999999999999997777777765    22   35566677788888877


Q ss_pred             cch-hHHHHhcCcHHHHHHHhcCCC---------------------------------------------CHHHHHHHHH
Q 039015          452 CKS-KSMVVESGGLDFIVDMVKKGL---------------------------------------------KVEARQHAAA  485 (685)
Q Consensus       452 ~~~-k~~i~~~g~i~~Lv~lL~~~~---------------------------------------------~~e~~~~Aa~  485 (685)
                      .+. +...++.|+++.|+..+.=++                                             .++.++....
T Consensus       167 ~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~fe  246 (604)
T KOG4500|consen  167 SRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFE  246 (604)
T ss_pred             cHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHH
Confidence            765 889999999998887653221                                             1233333344


Q ss_pred             HHHHhcCchhHHHHhhc-------------------------------------------------CCCcHHHHHHHhcc
Q 039015          486 TLFYIASIEEYRKLIGE-------------------------------------------------NPEAIPALVDMVRD  516 (685)
Q Consensus       486 ~L~~Ls~~~~~~~~i~~-------------------------------------------------~~g~i~~Lv~lL~~  516 (685)
                      +|...+.++..+-.+.+                                                 .+..+..++.++.+
T Consensus       247 ila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S  326 (604)
T KOG4500|consen  247 ILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRS  326 (604)
T ss_pred             HHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcC
Confidence            44444444443333332                                                 12255666666666


Q ss_pred             CCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhcc----CCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHH
Q 039015          517 GTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTS----SDSEELITDSLAVLATLAEKLDGTIAILHHGALDM  592 (685)
Q Consensus       517 ~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~----~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~  592 (685)
                      .+.+....+.-||.|++..++++..+++.|.+..|+.+|..    +++...+..++++|.|++--..++..+..+|.+..
T Consensus       327 ~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvtea  406 (604)
T KOG4500|consen  327 DDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEA  406 (604)
T ss_pred             CchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHH
Confidence            66666677888999999999999999999999999999954    34677889999999999999999999999999999


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCC
Q 039015          593 IMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGS  646 (685)
Q Consensus       593 Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~  646 (685)
                      ++..++.. +|.++..-.+.|..+-.. .+.....+.+....+..|++...+.+
T Consensus       407 IL~~lk~~-~ppv~fkllgTlrM~~d~-qe~~a~eL~kn~~l~ekLv~Wsks~D  458 (604)
T KOG4500|consen  407 ILLQLKLA-SPPVTFKLLGTLRMIRDS-QEYIACELAKNPELFEKLVDWSKSPD  458 (604)
T ss_pred             HHHHHHhc-CCcchHHHHHHHHHHHhc-hHHHHHHHhcCHHHHHHHHHhhhCCc
Confidence            99999998 999999999998776544 35577778877778999999988774

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.29  E-value=5.2e-10  Score=117.51  Aligned_cols=280  Identities=17%  Similarity=0.207  Sum_probs=203.9

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHH
Q 039015          378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSM  457 (685)
Q Consensus       378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~  457 (685)
                      +..+..||+.|..++.+.-.-+..-|..|+. -.+|+..+.+.|.|..|+++....+++++...+..|.|||.+...|..
T Consensus       303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~K  381 (791)
T KOG1222|consen  303 KNIVAMLVKALDRSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPK  381 (791)
T ss_pred             HhHHHHHHHHHcccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHH
Confidence            3467888899988888877788888888987 568999999999999999999999999999999999999999999999


Q ss_pred             HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCC-HHHHHHHHHHHHHhcCCC
Q 039015          458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGT-DRSKKNALVAIFGLLMHS  536 (685)
Q Consensus       458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~A~~aL~nLs~~~  536 (685)
                      |+..|.+|.++.+|.+.   .-..-|...|+++|.+++.+..+.- ..+|+.|++.+-.++ .++-...+..-.|||.+.
T Consensus       382 Mv~~GllP~l~~ll~~d---~~~~iA~~~lYh~S~dD~~K~Mfay-Tdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk  457 (791)
T KOG1222|consen  382 MVNGGLLPHLASLLDSD---TKHGIALNMLYHLSCDDDAKAMFAY-TDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK  457 (791)
T ss_pred             HhhccchHHHHHHhCCc---ccchhhhhhhhhhccCcHHHHHHHH-HHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc
Confidence            99999999999999866   3345689999999999999999988 899999999776654 333333333335676666


Q ss_pred             CcHHHHHhcCChHHH-------------------------------------HHHhccCCChhHHHHHHHHHHHHhcChh
Q 039015          537 GNHWRFLAAGAVPLL-------------------------------------LNLLTSSDSEELITDSLAVLATLAEKLD  579 (685)
Q Consensus       537 ~n~~~iv~~G~v~~L-------------------------------------v~lL~~~~~~~~~~~al~~L~~La~~~~  579 (685)
                      .|.+.+++-.++..|                                     ...+..+.++...-+|+++|+||+-..-
T Consensus       458 RNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dl  537 (791)
T KOG1222|consen  458 RNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDL  537 (791)
T ss_pred             ccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCC
Confidence            665555443333333                                     3333234556677788888888874222


Q ss_pred             c--------------------------------------------HHHHHhcCChHHHHHHhhcCC-ChhHHHHHHHHHH
Q 039015          580 G--------------------------------------------TIAILHHGALDMIMKILDSCT-SRAGKEYCVSLLL  614 (685)
Q Consensus       580 ~--------------------------------------------~~~i~~~g~v~~Lv~lL~~~~-s~~~~e~a~~~L~  614 (685)
                      .                                            ...+..++.|+.++++|+..+ .++..-.-+-+..
T Consensus       538 dw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~  617 (791)
T KOG1222|consen  538 DWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFL  617 (791)
T ss_pred             CHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHH
Confidence            1                                            122233344566677666532 2222223333344


Q ss_pred             HHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 039015          615 ALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFY  664 (685)
Q Consensus       615 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~  664 (685)
                      .+-.+  +..+..+.++...-..|..|+++.+..+++-+...|-++..+.
T Consensus       618 Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d  665 (791)
T KOG1222|consen  618 QFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHD  665 (791)
T ss_pred             HHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence            44555  5556677776778889999999999998888777777776653

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.25  E-value=4.8e-11  Score=138.04  Aligned_cols=226  Identities=16%  Similarity=0.125  Sum_probs=193.3

Q ss_pred             HHHHHHHHHHHHHhhcCCchhhHHHhh-CCHHHHHHhhcCCCHHHHHHHHHHhhccccCc-ch-hHHHHhcCcHHHHHHH
Q 039015          394 EEKNKVAYEVRLLTKSSIFNRSCLVEV-GCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-KS-KSMVVESGGLDFIVDM  470 (685)
Q Consensus       394 ~~~~~a~~~L~~La~~~~~~r~~i~~~-G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~-k~~i~~~g~i~~Lv~l  470 (685)
                      ..|.-|..+|.||..++..|+..+... |++..+|..|.+...+++..-..+|.|||=.- .| |+.+-+.|-+..|+..
T Consensus       366 aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~  445 (2195)
T KOG2122|consen  366 ALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAAC  445 (2195)
T ss_pred             HHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHH
Confidence            357778899999999999999998876 99999999999887888889999999998543 34 7777789999999987


Q ss_pred             hcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccC----CHHHHHHHHHHHHHhcCC----CCcHHH
Q 039015          471 VKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDG----TDRSKKNALVAIFGLLMH----SGNHWR  541 (685)
Q Consensus       471 L~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~----~~~~~~~A~~aL~nLs~~----~~n~~~  541 (685)
                      --...........+.+||||+.+. +||..|....|++.+||.+|.-.    +....++|-..|.|.+.+    .+.|+.
T Consensus       446 al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQI  525 (2195)
T KOG2122|consen  446 ALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQI  525 (2195)
T ss_pred             HHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHH
Confidence            544426677888999999999877 99999999899999999999643    356677888999998754    446778


Q ss_pred             HHhcCChHHHHHHhccCCChhHHHHHHHHHHHH-hcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccC
Q 039015          542 FLAAGAVPLLLNLLTSSDSEELITDSLAVLATL-AEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCING  620 (685)
Q Consensus       542 iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L-a~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~  620 (685)
                      +.+...+..|++.| .+++-.++.+++++|+|| |.+++.++.+.+.|+|+.|..++++. +..+-+-++++|.||-.+.
T Consensus       526 LR~~NCLq~LLQ~L-KS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  526 LRRHNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             HHHhhHHHHHHHHh-hhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCC
Confidence            88999999999999 566778889999999999 66899999999999999999999987 8888899999999998875


Q ss_pred             c
Q 039015          621 G  621 (685)
Q Consensus       621 ~  621 (685)
                      +
T Consensus       604 P  604 (2195)
T KOG2122|consen  604 P  604 (2195)
T ss_pred             c
Confidence            4

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.18  E-value=6.7e-09  Score=117.04  Aligned_cols=273  Identities=18%  Similarity=0.209  Sum_probs=212.3

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchh-HHHHhcC
Q 039015          384 ISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSK-SMVVESG  462 (685)
Q Consensus       384 Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k-~~i~~~g  462 (685)
                      +...|.+.+.+....++..|..+.... . -..+ ..+..+.|...|.++++.++..+++.|.++..+++.. ..+.+.+
T Consensus        43 lf~~L~~~~~e~v~~~~~iL~~~l~~~-~-~~~l-~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~  119 (503)
T PF10508_consen   43 LFDCLNTSNREQVELICDILKRLLSAL-S-PDSL-LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE  119 (503)
T ss_pred             HHHHHhhcChHHHHHHHHHHHHHHhcc-C-HHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence            677787777887778888888877522 2 2222 5678899999999999999999999999999888774 4445899


Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-cHHH
Q 039015          463 GLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG-NHWR  541 (685)
Q Consensus       463 ~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-n~~~  541 (685)
                      .++.++..|..+ +.++...|+.+|..|+..+.....+.. .+.+..|..++...++..+..+..++.+++...+ ....
T Consensus       120 l~~~i~~~L~~~-d~~Va~~A~~~L~~l~~~~~~~~~l~~-~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~  197 (503)
T PF10508_consen  120 LLPLIIQCLRDP-DLSVAKAAIKALKKLASHPEGLEQLFD-SNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA  197 (503)
T ss_pred             HHHHHHHHHcCC-cHHHHHHHHHHHHHHhCCchhHHHHhC-cchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            999999999999 999999999999999998887777877 7779999999988788888899999999986654 6666


Q ss_pred             HHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCC-ChhHH----HHHHHHHHHH
Q 039015          542 FLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCT-SRAGK----EYCVSLLLAL  616 (685)
Q Consensus       542 iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~-s~~~~----e~a~~~L~~L  616 (685)
                      +..+|.++.+++.| .+++.-++..|+.+|..||..+.|..-+.+.|.++.|..++.... +|...    -..+....++
T Consensus       198 ~~~sgll~~ll~eL-~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~l  276 (503)
T PF10508_consen  198 VVNSGLLDLLLKEL-DSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNL  276 (503)
T ss_pred             HHhccHHHHHHHHh-cCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHH
Confidence            77799999999999 457788899999999999999999999999999999999876531 23111    1233455556


Q ss_pred             hccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc
Q 039015          617 CINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYE  665 (685)
Q Consensus       617 ~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~  665 (685)
                      +...+..+....   +.++..|..++.+++...+..|-..+..+....+
T Consensus       277 a~~~~~~v~~~~---p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~  322 (503)
T PF10508_consen  277 ARVSPQEVLELY---PAFLERLFSMLESQDPTIREVAFDTLGQIGSTVE  322 (503)
T ss_pred             HhcChHHHHHHH---HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHH
Confidence            654434333222   3456667777777777777777766666654433

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=3.9e-10  Score=118.43  Aligned_cols=191  Identities=18%  Similarity=0.223  Sum_probs=163.2

Q ss_pred             HHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhc
Q 039015          436 STQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR  515 (685)
Q Consensus       436 ~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~  515 (685)
                      .+...|+..|.||+.+-.--..|...+.+..||..|... +.+........|..||..++++..+++ .|.|..|+++..
T Consensus       278 qLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~-n~~Ll~lv~~FLkKLSIf~eNK~~M~~-~~iveKL~klfp  355 (791)
T KOG1222|consen  278 QLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRS-NSSLLTLVIKFLKKLSIFDENKIVMEQ-NGIVEKLLKLFP  355 (791)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHccc-chHHHHHHHHHHHHhhhhccchHHHHh-ccHHHHHHHhcC
Confidence            445678889999999888888899999999999999999 899999999999999999999999999 999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHH
Q 039015          516 DGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMK  595 (685)
Q Consensus       516 ~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~  595 (685)
                      ...++.++..+..|+||+.+.+++.+|+..|.+|.|+.+|.++..   ..-|+.+|..++.+...+..+.....|+.+++
T Consensus       356 ~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~---~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk  432 (791)
T KOG1222|consen  356 IQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK---HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMK  432 (791)
T ss_pred             CCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc---chhhhhhhhhhccCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999954433   34589999999999999999999999999999


Q ss_pred             HhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCC
Q 039015          596 ILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPS  633 (685)
Q Consensus       596 lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g  633 (685)
                      .+-.++..++.-.-++...+||.+.  .-.+.+..|.|
T Consensus       433 ~v~~~~~~~vdl~lia~ciNl~lnk--RNaQlvceGqg  468 (791)
T KOG1222|consen  433 DVLSGTGSEVDLALIALCINLCLNK--RNAQLVCEGQG  468 (791)
T ss_pred             HHHhcCCceecHHHHHHHHHHHhcc--ccceEEecCcc
Confidence            4444535666666677778999763  33344444444

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.16  E-value=4.1e-10  Score=101.07  Aligned_cols=117  Identities=31%  Similarity=0.407  Sum_probs=107.0

Q ss_pred             HHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccC-cchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch
Q 039015          416 CLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKH-CKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE  494 (685)
Q Consensus       416 ~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~  494 (685)
                      .+++.|+++.|+.+|.+.+..++..|+.+|.+++.+ ++.+..+++.|+++.++.+|..+ +..++..|+++|.+|+...
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCc
Confidence            467889999999999999999999999999999988 57788888999999999999998 9999999999999999877


Q ss_pred             -hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015          495 -EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM  534 (685)
Q Consensus       495 -~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  534 (685)
                       ..+..+.. .|+++.|++++..++...++.|+++|.||+.
T Consensus        81 ~~~~~~~~~-~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLE-AGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHH-CCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence             55666666 8999999999999999999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.15  E-value=2.2e-11  Score=87.83  Aligned_cols=39  Identities=36%  Similarity=0.911  Sum_probs=31.2

Q ss_pred             CcCccccCCCceeccCcccccHHHHHHHHHcCC---CCCCCC
Q 039015          283 CPISLEIMKDPVTLSTGHTYDRASILKWFRAGN---STCPKT  321 (685)
Q Consensus       283 CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~---~~CP~c  321 (685)
                      ||||+++|.|||+++|||+||+.||.+|++...   ..||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            899999999999999999999999999998632   479987

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.14  E-value=7.7e-10  Score=99.33  Aligned_cols=117  Identities=28%  Similarity=0.425  Sum_probs=106.1

Q ss_pred             HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc-hhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC
Q 039015          457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASI-EEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH  535 (685)
Q Consensus       457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~  535 (685)
                      .+++.|+++.++.+|+++ +.+.+..++.+|.+++.. ++++..+.. .|+++.|+.+|.+++++++..|+++|.||+.+
T Consensus         2 ~~~~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~   79 (120)
T cd00020           2 AVIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVE-AGGLPALVQLLKSEDEEVVKAALWALRNLAAG   79 (120)
T ss_pred             hHHHcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHHhCCCHHHHHHHHHHHHHHccC
Confidence            466899999999999999 899999999999999988 688888887 89999999999999999999999999999987


Q ss_pred             CC-cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 039015          536 SG-NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE  576 (685)
Q Consensus       536 ~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~  576 (685)
                      .+ ....+++.|+++.|+++| .+.+..+++.++.+|.+|+.
T Consensus        80 ~~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          80 PEDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             cHHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence            74 667788899999999999 56678999999999999874

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.12  E-value=3.6e-11  Score=114.26  Aligned_cols=60  Identities=28%  Similarity=0.486  Sum_probs=52.6

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHc---------------CCCCCCCCCccccCCCCcccHH
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRA---------------GNSTCPKTGERLQSKELLVNLV  335 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~---------------~~~~CP~c~~~l~~~~l~~n~~  335 (685)
                      +..++|.||||++.+.|||+++|||.||+.||.+|+..               +...||.|+..++...++|.+.
T Consensus        14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg   88 (193)
T PLN03208         14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG   88 (193)
T ss_pred             cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence            56678999999999999999999999999999999852               2458999999999888888653

>TIGR00599 rad18 DNA repair protein rad18

Probab=99.08  E-value=1.2e-10  Score=123.95  Aligned_cols=72  Identities=19%  Similarity=0.319  Sum_probs=65.8

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcC
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNG  348 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~  348 (685)
                      .+...+.|+||.+++.+||+++|||+||..||..|+.. ...||.|+..+....+.+|..+.++|+.|...+.
T Consensus        22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R~   93 (397)
T TIGR00599        22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKNLRP   93 (397)
T ss_pred             ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHHhhH
Confidence            67889999999999999999999999999999999987 5689999999988789999999999999976543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK09687 putative lyase; Provisional

Probab=98.97  E-value=4.7e-08  Score=101.66  Aligned_cols=232  Identities=16%  Similarity=0.137  Sum_probs=124.8

Q ss_pred             hhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcch
Q 039015          375 GAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS  454 (685)
Q Consensus       375 ~~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~  454 (685)
                      +.....++.|...|.+.+..++..|++.|..+-.           ..+++.+..++.++++.++..|+++|..|......
T Consensus        19 ~~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~   87 (280)
T PRK09687         19 QCKKLNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC   87 (280)
T ss_pred             HHhhccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc
Confidence            3445567888888888888888888877765532           33456667777777888888888888776542221


Q ss_pred             hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHH--------------------H-------HhhcCCCcH
Q 039015          455 KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYR--------------------K-------LIGENPEAI  507 (685)
Q Consensus       455 k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~--------------------~-------~i~~~~g~i  507 (685)
                           ...+++.|..++.+..+..+|..|+.+|.++.......                    .       .++. ..++
T Consensus        88 -----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai  161 (280)
T PRK09687         88 -----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAI  161 (280)
T ss_pred             -----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHH
Confidence                 22345666666333336777777777777764321100                    0       0011 2344


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhc
Q 039015          508 PALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHH  587 (685)
Q Consensus       508 ~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~  587 (685)
                      +.|+.+|.+.++.++..|+.+|.++....        ..+++.|+.+| .+.+..++..|+..|..+-.          .
T Consensus       162 ~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L-~D~~~~VR~~A~~aLg~~~~----------~  222 (280)
T PRK09687        162 PLLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAML-QDKNEEIRIEAIIGLALRKD----------K  222 (280)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHh-cCCChHHHHHHHHHHHccCC----------h
Confidence            44444444444444444444444441100        12344444444 34444444444444443311          1


Q ss_pred             CChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHh-cCChHHHHHHHHHHH
Q 039015          588 GALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLS-QGSSRASKKASALIR  658 (685)
Q Consensus       588 g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~-~g~~~~k~~A~~lL~  658 (685)
                      .++|.|++.++++ .  .+..++.+|..+..             .-++|.|..++. +++++++++|.+.|+
T Consensus       223 ~av~~Li~~L~~~-~--~~~~a~~ALg~ig~-------------~~a~p~L~~l~~~~~d~~v~~~a~~a~~  278 (280)
T PRK09687        223 RVLSVLIKELKKG-T--VGDLIIEAAGELGD-------------KTLLPVLDTLLYKFDDNEIITKAIDKLK  278 (280)
T ss_pred             hHHHHHHHHHcCC-c--hHHHHHHHHHhcCC-------------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence            2355555555543 2  23333333333221             114677777876 667788888877665

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.93  E-value=3e-10  Score=113.92  Aligned_cols=71  Identities=21%  Similarity=0.381  Sum_probs=64.9

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhc
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDN  347 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~  347 (685)
                      .+.+-++|-||+++|+-|++++||||||.-||..++.. ++.||.|....+...++-|+.+..+|+.+...+
T Consensus        19 ~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~R   89 (442)
T KOG0287|consen   19 TLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSLNFAR   89 (442)
T ss_pred             hhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHHHHHH
Confidence            55677999999999999999999999999999999998 899999999999999999999999998875553

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.91  E-value=1.8e-08  Score=106.98  Aligned_cols=232  Identities=17%  Similarity=0.165  Sum_probs=165.9

Q ss_pred             CHHHHHHhhcC--CCHHHHHHHHHHhhccccCcchhHH-HHh------cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 039015          422 CIPSLLKLLSS--KDSSTQENAIAALLNLSKHCKSKSM-VVE------SGGLDFIVDMVKKGLKVEARQHAAATLFYIAS  492 (685)
Q Consensus       422 ~ip~Lv~lL~s--~~~~~~~~A~~aL~nLs~~~~~k~~-i~~------~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~  492 (685)
                      ....++.+|+.  .+.++....+..+..|..++..+.. +..      .....+++.++.++ +.-++..|+.+|..|..
T Consensus        56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~  134 (312)
T PF03224_consen   56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLS  134 (312)
T ss_dssp             ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            35566666654  5889999999999998877765443 332      23688999989888 99999999999999987


Q ss_pred             chhHHHHhhcCCCcHHHHHHHhcc----CCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHh------ccCCChh
Q 039015          493 IEEYRKLIGENPEAIPALVDMVRD----GTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLL------TSSDSEE  562 (685)
Q Consensus       493 ~~~~~~~i~~~~g~i~~Lv~lL~~----~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL------~~~~~~~  562 (685)
                      ....+..-.. .+.++.++.++.+    .+......|+.+|.+|...++.|..+.+.|+++.|+.+|      .+..+..
T Consensus       135 ~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q  213 (312)
T PF03224_consen  135 QGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ  213 (312)
T ss_dssp             STTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred             cCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence            6655444433 4578888888875    233455789999999999999999999999999999999      3445678


Q ss_pred             HHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHH
Q 039015          563 LITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLL  642 (685)
Q Consensus       563 ~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll  642 (685)
                      +.-.++-+++.|+.+++....+.+.+.++.|+++++..+...+..-++++|.|++..+.......|.. .|+.+.|..|.
T Consensus       214 l~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~-~~~l~~l~~L~  292 (312)
T PF03224_consen  214 LQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVL-CGLLKTLQNLS  292 (312)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHH-H-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHH-ccHHHHHHHHh
Confidence            88999999999999999999999988899999999987688899999999999998876656666665 56666666655


Q ss_pred             hcC--ChHHHHHHHHH
Q 039015          643 SQG--SSRASKKASAL  656 (685)
Q Consensus       643 ~~g--~~~~k~~A~~l  656 (685)
                      ...  ++...+--..+
T Consensus       293 ~rk~~Dedl~edl~~L  308 (312)
T PF03224_consen  293 ERKWSDEDLTEDLEFL  308 (312)
T ss_dssp             SS--SSHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHH
Confidence            443  55555544443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.87  E-value=1.5e-09  Score=77.33  Aligned_cols=38  Identities=37%  Similarity=0.855  Sum_probs=33.6

Q ss_pred             CcCccccCCCc-eeccCcccccHHHHHHHHHcCCCCCCCC
Q 039015          283 CPISLEIMKDP-VTLSTGHTYDRASILKWFRAGNSTCPKT  321 (685)
Q Consensus       283 CpIc~~~m~dP-v~~~cghtfcr~ci~~~~~~~~~~CP~c  321 (685)
                      ||||.+.+.+| ++++|||+||+.||.+|++. +..||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence            89999999999 57899999999999999998 7899987

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.84  E-value=1.2e-07  Score=100.69  Aligned_cols=212  Identities=20%  Similarity=0.219  Sum_probs=160.0

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHh------hCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHH
Q 039015          384 ISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVE------VGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSM  457 (685)
Q Consensus       384 Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~------~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~  457 (685)
                      |+..+ +.+.+...-++..+..+...++.....+..      .....+++++|.++|.-++..|+.+|..|......+..
T Consensus        63 lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~  141 (312)
T PF03224_consen   63 LLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSE  141 (312)
T ss_dssp             HHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--H
T ss_pred             HHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCcccc
Confidence            33444 567888889999999999877766655555      23688899999999999999999999999877766554


Q ss_pred             HHhcCcHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHh------cc-CCHHHHHHHHH
Q 039015          458 VVESGGLDFIVDMVKKGL---KVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMV------RD-GTDRSKKNALV  527 (685)
Q Consensus       458 i~~~g~i~~Lv~lL~~~~---~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL------~~-~~~~~~~~A~~  527 (685)
                      -...+.++.++..|++..   +.+.+..|+..|.+|...+++|..+.+ .|+++.|+.++      .+ .+.+..-.++-
T Consensus       142 ~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll  220 (312)
T PF03224_consen  142 KLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK-SNGVSPLFDILRKQATNSNSSGIQLQYQALL  220 (312)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh-cCcHHHHHHHHHhhcccCCCCchhHHHHHHH
Confidence            444677888888887632   345568999999999999999999999 99999999999      22 22567779999


Q ss_pred             HHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChh--cHHHHHhcCChHHHHHHh
Q 039015          528 AIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLD--GTIAILHHGALDMIMKIL  597 (685)
Q Consensus       528 aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~--~~~~i~~~g~v~~Lv~lL  597 (685)
                      ++|.|+.+++....+...+.|+.|+++++....+.+..-++++|.||.....  ....++..|+++.+-.+.
T Consensus       221 ~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~  292 (312)
T PF03224_consen  221 CLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLS  292 (312)
T ss_dssp             HHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHh
Confidence            9999999999999999999999999999877889999999999999998766  677777766555444433

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.80  E-value=1.7e-06  Score=93.93  Aligned_cols=273  Identities=11%  Similarity=0.061  Sum_probs=195.9

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCC-CHHHHHHHHHHhhccccCcchhHHHHhcC
Q 039015          384 ISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSK-DSSTQENAIAALLNLSKHCKSKSMVVESG  462 (685)
Q Consensus       384 Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~-~~~~~~~A~~aL~nLs~~~~~k~~i~~~g  462 (685)
                      ++..|..++.-.+..|+..|..+...+..+.......-....|...|.+. +...+.-|+.+|.+|...++.|..+.+.+
T Consensus       106 fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~  185 (429)
T cd00256         106 FFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLAD  185 (429)
T ss_pred             HHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHcc
Confidence            34577778888899999999988765543322211111334556666653 47788889999999999999999999988


Q ss_pred             cHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCC-HHHHHHHHHHHHHhcCCC----
Q 039015          463 GLDFIVDMVKKGL-KVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGT-DRSKKNALVAIFGLLMHS----  536 (685)
Q Consensus       463 ~i~~Lv~lL~~~~-~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~A~~aL~nLs~~~----  536 (685)
                      +++.|+.+|+... +...+-+++-+++-||++++....... .+.|+.|+++++... ..+..-++.+|.||....    
T Consensus       186 ~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~  264 (429)
T cd00256         186 GVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKR-LSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDRE  264 (429)
T ss_pred             CHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccc
Confidence            9999999998753 568889999999999999987777765 899999999998754 678889999999998743    


Q ss_pred             ---CcHHHHHhcCChHHHHHHhccC--CChhHHHHHHHHHHHHh-------c------------------C------hhc
Q 039015          537 ---GNHWRFLAAGAVPLLLNLLTSS--DSEELITDSLAVLATLA-------E------------------K------LDG  580 (685)
Q Consensus       537 ---~n~~~iv~~G~v~~Lv~lL~~~--~~~~~~~~al~~L~~La-------~------------------~------~~~  580 (685)
                         .....|++.|+.+.+-.+. ..  .++++.+..-.+-..|.       +                  |      .++
T Consensus       265 ~~~~~~~~mv~~~l~~~l~~L~-~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN  343 (429)
T cd00256         265 VKKTAALQMVQCKVLKTLQSLE-QRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWREN  343 (429)
T ss_pred             hhhhHHHHHHHcChHHHHHHHh-cCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHH
Confidence               2345677777766544444 32  34555444333222222       1                  1      234


Q ss_pred             HHHHHhcCC--hHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHH
Q 039015          581 TIAILHHGA--LDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIR  658 (685)
Q Consensus       581 ~~~i~~~g~--v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~  658 (685)
                      ...+-+.+.  +..|+++|..+.++.+..-|+-=+..++.+-| ..+..+.+ -|+-..+..|+.+.++.++..|-..++
T Consensus       344 ~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P-~gr~i~~~-lg~K~~vM~Lm~h~d~~Vr~eAL~avQ  421 (429)
T cd00256         344 ADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYP-RGKDVVEQ-LGGKQRVMRLLNHEDPNVRYEALLAVQ  421 (429)
T ss_pred             HHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCc-cHHHHHHH-cCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            455655554  68888888654467777777777888888753 34455555 789999999999999999998877766


Q ss_pred             HH
Q 039015          659 IL  660 (685)
Q Consensus       659 ~l  660 (685)
                      .|
T Consensus       422 kl  423 (429)
T cd00256         422 KL  423 (429)
T ss_pred             HH
Confidence            54

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=4.8e-07  Score=93.83  Aligned_cols=186  Identities=20%  Similarity=0.193  Sum_probs=152.4

Q ss_pred             cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc-chhHHHHhcCcHHHH
Q 039015          389 LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-KSKSMVVESGGLDFI  467 (685)
Q Consensus       389 ~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~k~~i~~~g~i~~L  467 (685)
                      .+.+.+.+..|+..|..++. +.+|..-+...|++++++..|.+.+..+++.|+++|...+.++ .....+++.|+++.|
T Consensus        93 ~s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L  171 (342)
T KOG2160|consen   93 SSVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL  171 (342)
T ss_pred             ccCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence            45688999999999999996 8899999999999999999999999999999999999998776 569999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHhcCchh-HHHHhhcCCCcHHHHHHHhccC--CHHHHHHHHHHHHHhcCCC-CcHHHHH
Q 039015          468 VDMVKKGLKVEARQHAAATLFYIASIEE-YRKLIGENPEAIPALVDMVRDG--TDRSKKNALVAIFGLLMHS-GNHWRFL  543 (685)
Q Consensus       468 v~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~A~~aL~nLs~~~-~n~~~iv  543 (685)
                      +.+|.+..+..++.+|..++.+|..+.. ....+-. .+++..|.+.++++  +...+..|+..|..|.... .....+.
T Consensus       172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~-~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~  250 (342)
T KOG2160|consen  172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLK-LNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS  250 (342)
T ss_pred             HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHh-cCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            9999977678889999999999998774 4445555 66799999999984  5778888999999888544 4555555


Q ss_pred             hcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC
Q 039015          544 AAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK  577 (685)
Q Consensus       544 ~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~  577 (685)
                      ..|....++.+. +..+....+.++.++..+...
T Consensus       251 ~~~f~~~~~~l~-~~l~~~~~e~~l~~~l~~l~~  283 (342)
T KOG2160|consen  251 SLGFQRVLENLI-SSLDFEVNEAALTALLSLLSE  283 (342)
T ss_pred             HhhhhHHHHHHh-hccchhhhHHHHHHHHHHHHH
Confidence            566666666666 555666777777766665553

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.79  E-value=1.7e-06  Score=96.61  Aligned_cols=261  Identities=16%  Similarity=0.236  Sum_probs=197.5

Q ss_pred             HHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC--CCHHHHHHHHHHhhccccCcc--
Q 039015          379 LLANFISDRLLE-GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS--KDSSTQENAIAALLNLSKHCK--  453 (685)
Q Consensus       379 ~~i~~Lv~~L~s-~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s--~~~~~~~~A~~aL~nLs~~~~--  453 (685)
                      .+|+.|+....+ .=.+.|+.|+..|..+++   .+|..++..| +++|+..|..  .|+++...++..++++..+++  
T Consensus        22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~   97 (970)
T KOG0946|consen   22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP   97 (970)
T ss_pred             hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence            369999999854 457889999999999998   6788877665 7888998876  689999999999999987763  


Q ss_pred             ----h-h------HHH----H-hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch--hHHHHhhcCCCcHHHHHHHhc
Q 039015          454 ----S-K------SMV----V-ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE--EYRKLIGENPEAIPALVDMVR  515 (685)
Q Consensus       454 ----~-k------~~i----~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~  515 (685)
                          + +      .+|    + ..+-|..++..+... +--+|..|+..|.+|-...  +.+..+...+-+|..|+.+|.
T Consensus        98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~-DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~  176 (970)
T KOG0946|consen   98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF-DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR  176 (970)
T ss_pred             hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh-chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence                2 2      222    2 578899999999988 8899999999999886544  788888776899999999999


Q ss_pred             cCCHHHHHHHHHHHHHhcCCCCcHHHHHh-cCChHHHHHHhccCC--C-hhHHHHHHHHHHHHhcChh-cHHHHHhcCCh
Q 039015          516 DGTDRSKKNALVAIFGLLMHSGNHWRFLA-AGAVPLLLNLLTSSD--S-EELITDSLAVLATLAEKLD-GTIAILHHGAL  590 (685)
Q Consensus       516 ~~~~~~~~~A~~aL~nLs~~~~n~~~iv~-~G~v~~Lv~lL~~~~--~-~~~~~~al~~L~~La~~~~-~~~~i~~~g~v  590 (685)
                      +.-...+..|+-.|..|+.+..+.++++. ..+...|..++...+  + .-+.+.|+.+|-||-.+.. ++.-+.+.+-|
T Consensus       177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i  256 (970)
T KOG0946|consen  177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI  256 (970)
T ss_pred             hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence            87888899999999999999998888887 689999999996433  2 3588999999999988654 55555555559


Q ss_pred             HHHHHHhhcCC--Ch----h------HHHHHHHHHHHHhccCc-----HHHHHHHHhcCCcHHHHHHHHhcC
Q 039015          591 DMIMKILDSCT--SR----A------GKEYCVSLLLALCINGG-----ANVVALLVKSPSLMGSLYSLLSQG  645 (685)
Q Consensus       591 ~~Lv~lL~~~~--s~----~------~~e~a~~~L~~L~~~~~-----~~~~~~l~~~~g~i~~L~~Ll~~g  645 (685)
                      |.|.++|...-  +.    +      ..-.++.++..+..-+.     .....++.. .+++..|..++-+.
T Consensus       257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~s-s~ll~~Lc~il~~~  327 (970)
T KOG0946|consen  257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVS-SHLLDVLCTILMHP  327 (970)
T ss_pred             HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH-cchHHHHHHHHcCC
Confidence            99998775310  21    1      11235555555554332     234456666 67777777666544

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=2.9e-09  Score=103.04  Aligned_cols=59  Identities=22%  Similarity=0.484  Sum_probs=52.2

Q ss_pred             CCCccCcCccccCCCceeccCcccccHHHHHHHHHc--CCCCCCCCCccccCCCCcccHHH
Q 039015          278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRA--GNSTCPKTGERLQSKELLVNLVL  336 (685)
Q Consensus       278 ~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~--~~~~CP~c~~~l~~~~l~~n~~l  336 (685)
                      -..|.|.||++.-+|||++.|||-||..||++|+..  ....||+|+..++.+.++|-+.-
T Consensus        45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGr  105 (230)
T KOG0823|consen   45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGR  105 (230)
T ss_pred             CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeecc
Confidence            457999999999999999999999999999999984  35578999999999999886543

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.76  E-value=2.2e-09  Score=82.40  Aligned_cols=59  Identities=24%  Similarity=0.488  Sum_probs=34.4

Q ss_pred             CCccCcCccccCCCceec-cCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhH
Q 039015          279 DDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRII  340 (685)
Q Consensus       279 ~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i  340 (685)
                      .-++|++|.++|++||.+ .|.|.||+.||...+..   .||.|..+....+++.|..|.++|
T Consensus         6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i   65 (65)
T PF14835_consen    6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI   65 (65)
T ss_dssp             HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred             HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence            458999999999999975 89999999999875543   499999999999999999999886

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.69  E-value=1.4e-08  Score=73.27  Aligned_cols=39  Identities=44%  Similarity=0.977  Sum_probs=36.4

Q ss_pred             CcCccccCCCce-eccCcccccHHHHHHHHH-cCCCCCCCC
Q 039015          283 CPISLEIMKDPV-TLSTGHTYDRASILKWFR-AGNSTCPKT  321 (685)
Q Consensus       283 CpIc~~~m~dPv-~~~cghtfcr~ci~~~~~-~~~~~CP~c  321 (685)
                      ||||.+.+.+|+ +++|||+||+.||.+|+. .+...||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999999999 889999999999999999 567889987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.68  E-value=9.4e-09  Score=74.07  Aligned_cols=36  Identities=31%  Similarity=0.711  Sum_probs=23.4

Q ss_pred             CcCccccCCC----ceeccCcccccHHHHHHHHHcC---CCCCC
Q 039015          283 CPISLEIMKD----PVTLSTGHTYDRASILKWFRAG---NSTCP  319 (685)
Q Consensus       283 CpIc~~~m~d----Pv~~~cghtfcr~ci~~~~~~~---~~~CP  319 (685)
                      ||||.+ |.+    |+.++|||+||+.||++++..+   .+.||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            999999 888    9999999999999999999853   56777

>PRK09687 putative lyase; Provisional

Probab=98.61  E-value=1.4e-06  Score=90.68  Aligned_cols=196  Identities=15%  Similarity=0.146  Sum_probs=138.8

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHh-hcCCCHHHHHHHHHHhhccccCcc-----
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKL-LSSKDSSTQENAIAALLNLSKHCK-----  453 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~l-L~s~~~~~~~~A~~aL~nLs~~~~-----  453 (685)
                      .+..+...+.+.++.+|..|++.|..+-... ..     ..-++|.|..+ +.++++.++..|+.+|.++.....     
T Consensus        55 ~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~  128 (280)
T PRK09687         55 VFRLAIELCSSKNPIERDIGADILSQLGMAK-RC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPK  128 (280)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchH
Confidence            3566677778889999999999888875311 11     22356777766 567888899999999888742211     


Q ss_pred             -------------h--hHHHH-------hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHH
Q 039015          454 -------------S--KSMVV-------ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALV  511 (685)
Q Consensus       454 -------------~--k~~i~-------~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv  511 (685)
                                   .  |...+       ...+++.|+.+|+.. +.++|..|+.+|..+..        .. ..+++.|+
T Consensus       129 a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~-~~~VR~~A~~aLg~~~~--------~~-~~~~~~L~  198 (280)
T PRK09687        129 IVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDP-NGDVRNWAAFALNSNKY--------DN-PDIREAFV  198 (280)
T ss_pred             HHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCC-CHHHHHHHHHHHhcCCC--------CC-HHHHHHHH
Confidence                         1  11111       244677888888877 77888888888877722        12 46899999


Q ss_pred             HHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChH
Q 039015          512 DMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALD  591 (685)
Q Consensus       512 ~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~  591 (685)
                      .+|.+.+..++..|+.+|..+          -+..+||.|++.|. +++  +...++.+|..+..          ..++|
T Consensus       199 ~~L~D~~~~VR~~A~~aLg~~----------~~~~av~~Li~~L~-~~~--~~~~a~~ALg~ig~----------~~a~p  255 (280)
T PRK09687        199 AMLQDKNEEIRIEAIIGLALR----------KDKRVLSVLIKELK-KGT--VGDLIIEAAGELGD----------KTLLP  255 (280)
T ss_pred             HHhcCCChHHHHHHHHHHHcc----------CChhHHHHHHHHHc-CCc--hHHHHHHHHHhcCC----------HhHHH
Confidence            999999999999999999775          23368999999994 333  55666666666644          13589


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHH
Q 039015          592 MIMKILDSCTSRAGKEYCVSLLL  614 (685)
Q Consensus       592 ~Lv~lL~~~~s~~~~e~a~~~L~  614 (685)
                      .|..+++...++.++..|..+|.
T Consensus       256 ~L~~l~~~~~d~~v~~~a~~a~~  278 (280)
T PRK09687        256 VLDTLLYKFDDNEIITKAIDKLK  278 (280)
T ss_pred             HHHHHHhhCCChhHHHHHHHHHh
Confidence            99998873338899999888774

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=2.4e-08  Score=99.47  Aligned_cols=54  Identities=24%  Similarity=0.573  Sum_probs=48.8

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCC
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKEL  330 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l  330 (685)
                      ..+..++|.+|++-+.+|..++|||.||.+||..|..+ ...||.||..+++.++
T Consensus       235 i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskv  288 (293)
T KOG0317|consen  235 IPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKV  288 (293)
T ss_pred             CCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcce
Confidence            56777999999999999999999999999999999998 6779999999877654

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.61  E-value=2.5e-08  Score=75.19  Aligned_cols=46  Identities=26%  Similarity=0.536  Sum_probs=41.2

Q ss_pred             CccCcCccccCCCceeccCccc-ccHHHHHHHHHcCCCCCCCCCcccc
Q 039015          280 DFTCPISLEIMKDPVTLSTGHT-YDRASILKWFRAGNSTCPKTGERLQ  326 (685)
Q Consensus       280 ~~~CpIc~~~m~dPv~~~cght-fcr~ci~~~~~~~~~~CP~c~~~l~  326 (685)
                      ++.|+||++...++++++|||. ||..|+.+|+.. ...||.|++++.
T Consensus         2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred             cCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence            5789999999999999999999 999999999995 889999999875

...

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.59  E-value=5.3e-06  Score=100.24  Aligned_cols=228  Identities=13%  Similarity=0.059  Sum_probs=138.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV  458 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i  458 (685)
                      ..++.|+..|.+.++.+|..|+..|..+.           ..+++|.|+..|++++..++..|+.+|..+....      
T Consensus       621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~------  683 (897)
T PRK13800        621 PSVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL------  683 (897)
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc------
Confidence            45788899999999999999998887653           2457899999999999999999999987763211      


Q ss_pred             HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh-------------HH----HHhhcCCCcHHHHHHHhccCCHHH
Q 039015          459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE-------------YR----KLIGENPEAIPALVDMVRDGTDRS  521 (685)
Q Consensus       459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-------------~~----~~i~~~~g~i~~Lv~lL~~~~~~~  521 (685)
                         ...+.+...|.+. ++.+|..|+.+|..+...+.             .|    ..++. .+..+.|..++.++++.+
T Consensus       684 ---~~~~~L~~~L~~~-d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~-~~~~~~l~~~l~D~~~~V  758 (897)
T PRK13800        684 ---PPAPALRDHLGSP-DPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVS-VDDVESVAGAATDENREV  758 (897)
T ss_pred             ---CchHHHHHHhcCC-CHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhc-ccCcHHHHHHhcCCCHHH
Confidence               1234555666665 66777777666655421100             00    00000 111233344444444444


Q ss_pred             HHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCC
Q 039015          522 KKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCT  601 (685)
Q Consensus       522 ~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~  601 (685)
                      +..++.+|..+...        +.++++.|+.++ .++++.++..|+..|..+...+         ..++.++..+.+. 
T Consensus       759 R~~aa~aL~~~~~~--------~~~~~~~L~~ll-~D~d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~-  819 (897)
T PRK13800        759 RIAVAKGLATLGAG--------GAPAGDAVRALT-GDPDPLVRAAALAALAELGCPP---------DDVAAATAALRAS-  819 (897)
T ss_pred             HHHHHHHHHHhccc--------cchhHHHHHHHh-cCCCHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCC-
Confidence            44444444443221        112245566666 4555666666666665552210         0123455566655 


Q ss_pred             ChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 039015          602 SRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRIL  660 (685)
Q Consensus       602 s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l  660 (685)
                      ++.++..|+.+|..+..             ...++.|..++.+.+..++..|...|..+
T Consensus       820 d~~VR~~Aa~aL~~l~~-------------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~  865 (897)
T PRK13800        820 AWQVRQGAARALAGAAA-------------DVAVPALVEALTDPHLDVRKAAVLALTRW  865 (897)
T ss_pred             ChHHHHHHHHHHHhccc-------------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence            66677777777655432             12357889999999999999988888775

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.58  E-value=2.4e-08  Score=98.38  Aligned_cols=70  Identities=17%  Similarity=0.184  Sum_probs=60.9

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHh
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVD  346 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~  346 (685)
                      .+..-++|-||..+++-|+.++||||||.-||..++.. ++.||.|+......-+.-+..++..++.+...
T Consensus        21 ~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~   90 (391)
T COG5432          21 GLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHARN   90 (391)
T ss_pred             cchhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhhhc
Confidence            45556899999999999999999999999999999998 88999999998877778888888887776443

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=5.3e-06  Score=93.33  Aligned_cols=258  Identities=18%  Similarity=0.152  Sum_probs=189.7

Q ss_pred             HHHHHHHHhcCC-CHHHHHHHHHHHHH-HhhcCCchhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhcccc-Ccchh
Q 039015          380 LANFISDRLLEG-TSEEKNKVAYEVRL-LTKSSIFNRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLSK-HCKSK  455 (685)
Q Consensus       380 ~i~~Lv~~L~s~-~~~~~~~a~~~L~~-La~~~~~~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~-~~~~k  455 (685)
                      .+..|++.|... ++-.|.+|+.+|.. |+-.+++.-..|--.-.+|.|+.+|+. .+.+++..|+++|.+|.. .+...
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            478888888654 88889999988865 454444444444445679999999988 679999999999999985 56678


Q ss_pred             HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC-
Q 039015          456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM-  534 (685)
Q Consensus       456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-  534 (685)
                      ..+++.++||.+++-|..=...++.+.+..+|-.+|....  ..|.+ .|++-..+..|.--+..++..|+..-.|.|. 
T Consensus       248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~-AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cks  324 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQ-AGALSAVLSYLDFFSIHAQRVALAIAANCCKS  324 (1051)
T ss_pred             heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8888999999999988765578999999999999987443  34445 8899999988876677888899999999995 


Q ss_pred             -CCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc----ChhcHHHHHhcCChHHHHHHhhcCC---ChhHH
Q 039015          535 -HSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE----KLDGTIAILHHGALDMIMKILDSCT---SRAGK  606 (685)
Q Consensus       535 -~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~----~~~~~~~i~~~g~v~~Lv~lL~~~~---s~~~~  606 (685)
                       ..+.-..+++  ++|.|..+| +..+....+.++-+++.++.    .++--+++...|-|.-..+++...+   +-...
T Consensus       325 i~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~  401 (1051)
T KOG0168|consen  325 IRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY  401 (1051)
T ss_pred             CCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence             3444455555  499999999 66777788888888888865    3555567888887887877776531   11122


Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcC
Q 039015          607 EYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQG  645 (685)
Q Consensus       607 e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g  645 (685)
                      ---+..|..+|.+++ -....+.+ .++...|..++..-
T Consensus       402 ~~vIrmls~msS~~p-l~~~tl~k-~~I~~~L~~il~g~  438 (1051)
T KOG0168|consen  402 TGVIRMLSLMSSGSP-LLFRTLLK-LDIADTLKRILQGY  438 (1051)
T ss_pred             hHHHHHHHHHccCCh-HHHHHHHH-hhHHHHHHHHHhcc
Confidence            234455555565543 44445555 67788888887543

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.55  E-value=5.1e-08  Score=97.19  Aligned_cols=48  Identities=23%  Similarity=0.437  Sum_probs=41.1

Q ss_pred             CCCccCcCccccCCCc--------eeccCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015          278 PDDFTCPISLEIMKDP--------VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQ  326 (685)
Q Consensus       278 ~~~~~CpIc~~~m~dP--------v~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~  326 (685)
                      .++..||||++.+.++        +..+|||.||+.||.+|+.. +.+||.||..+.
T Consensus       172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~  227 (238)
T PHA02929        172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI  227 (238)
T ss_pred             CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence            4568999999987764        45689999999999999986 789999999875

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.54  E-value=6.2e-07  Score=79.86  Aligned_cols=132  Identities=17%  Similarity=0.157  Sum_probs=114.5

Q ss_pred             HHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHH
Q 039015          379 LLANFISDRL-LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSM  457 (685)
Q Consensus       379 ~~i~~Lv~~L-~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~  457 (685)
                      ..+..||... ...+.+.+.+.+..|.+++. ++.|...+.+..++...+.-|..+|..+.+.++..|+|++.+..|++.
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~   94 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF   94 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence            3467777766 45688999999999999997 999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHH
Q 039015          458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDM  513 (685)
Q Consensus       458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~l  513 (685)
                      |.++++++.++.++.+. ...+...|+.+|..|+... ..+..+.. +.++..+-+.
T Consensus        95 I~ea~g~plii~~lssp-~e~tv~sa~~~l~~l~~~~Rt~r~ell~-p~Vv~~v~r~  149 (173)
T KOG4646|consen   95 IREALGLPLIIFVLSSP-PEITVHSAALFLQLLEFGERTERDELLS-PAVVRTVQRW  149 (173)
T ss_pred             HHHhcCCceEEeecCCC-hHHHHHHHHHHHHHhcCcccchhHHhcc-HHHHHHHHHH
Confidence            99999999999999998 8888889999999998766 66777766 4444444443

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.54  E-value=3.6e-08  Score=72.25  Aligned_cols=40  Identities=38%  Similarity=0.870  Sum_probs=34.2

Q ss_pred             cCcCccccCC---CceeccCcccccHHHHHHHHHcCCCCCCCCC
Q 039015          282 TCPISLEIMK---DPVTLSTGHTYDRASILKWFRAGNSTCPKTG  322 (685)
Q Consensus       282 ~CpIc~~~m~---dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~  322 (685)
                      .|+||++.+.   .++.++|||.|+..||.+|+.. +.+||.||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence            5999999994   4566799999999999999998 67999995

...

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=5.6e-08  Score=90.02  Aligned_cols=55  Identities=22%  Similarity=0.571  Sum_probs=46.0

Q ss_pred             CCCCCccCcCccccCCC--ceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCc
Q 039015          276 LTPDDFTCPISLEIMKD--PVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELL  331 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~d--Pv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~  331 (685)
                      ....-|.||||++-+..  ||.+.|||.||+.||+..++. ...||.|++.+++..+.
T Consensus       127 ~~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~  183 (187)
T KOG0320|consen  127 RKEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFH  183 (187)
T ss_pred             ccccccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhhe
Confidence            34455999999999886  455789999999999999998 67899999988876554

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.53  E-value=1.2e-05  Score=97.17  Aligned_cols=228  Identities=17%  Similarity=0.109  Sum_probs=152.8

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc------
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC------  452 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~------  452 (685)
                      ..++.|+..|+..+..+|..|+..|..+....+          ..+.|...|.++|+.++..|+.+|..+...+      
T Consensus       652 ~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~  721 (897)
T PRK13800        652 GFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----------PAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAA  721 (897)
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----------chHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHH
Confidence            457888999999999999999999887753111          1245556666666666666666665543111      


Q ss_pred             -----ch--hHHHH----hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHH
Q 039015          453 -----KS--KSMVV----ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRS  521 (685)
Q Consensus       453 -----~~--k~~i~----~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~  521 (685)
                           +.  |...+    ..+..+.|...+... +.++|..++.+|..+...         ..+.++.|..+++++++.+
T Consensus       722 ~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~-~~~VR~~aa~aL~~~~~~---------~~~~~~~L~~ll~D~d~~V  791 (897)
T PRK13800        722 ALGDPDHRVRIEAVRALVSVDDVESVAGAATDE-NREVRIAVAKGLATLGAG---------GAPAGDAVRALTGDPDPLV  791 (897)
T ss_pred             HhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCC-CHHHHHHHHHHHHHhccc---------cchhHHHHHHHhcCCCHHH
Confidence                 00  00000    112223444455555 555666555555554321         1335789999999999999


Q ss_pred             HHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCC
Q 039015          522 KKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCT  601 (685)
Q Consensus       522 ~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~  601 (685)
                      +..|+.+|.++...         ..+++.|+..| .+++..++..|+.+|..+..          ...++.|+.+|++. 
T Consensus       792 R~aA~~aLg~~g~~---------~~~~~~l~~aL-~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~-  850 (897)
T PRK13800        792 RAAALAALAELGCP---------PDDVAAATAAL-RASAWQVRQGAARALAGAAA----------DVAVPALVEALTDP-  850 (897)
T ss_pred             HHHHHHHHHhcCCc---------chhHHHHHHHh-cCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCC-
Confidence            99999999887322         11235678888 67788899999999987642          23468899999987 


Q ss_pred             ChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 039015          602 SRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRI  659 (685)
Q Consensus       602 s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~  659 (685)
                      ++.++..|+.+|..+-  .++.          ..+.|...+.+.+..+++.|...|..
T Consensus       851 ~~~VR~~A~~aL~~~~--~~~~----------a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        851 HLDVRKAAVLALTRWP--GDPA----------ARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             CHHHHHHHHHHHhccC--CCHH----------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            9999999999998862  1122          24467788889999999999888763

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=98.49  E-value=2.2e-05  Score=82.57  Aligned_cols=271  Identities=14%  Similarity=0.117  Sum_probs=183.3

Q ss_pred             HHHHHHHhcC-CCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC-CCHH-------HHHHHHHHhhccccC
Q 039015          381 ANFISDRLLE-GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS-KDSS-------TQENAIAALLNLSKH  451 (685)
Q Consensus       381 i~~Lv~~L~s-~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s-~~~~-------~~~~A~~aL~nLs~~  451 (685)
                      ...+++.|.+ -.++...-.+..+...+. ++..+-.+++.|.+..++.++.. ++..       .-..+.....-|...
T Consensus       225 ~~~l~~ll~~~v~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltG  303 (604)
T KOG4500|consen  225 VFMLLQLLPSMVREDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTG  303 (604)
T ss_pred             HHHHHHHHHHhhccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcC
Confidence            4445566643 344555555666777775 77889999999999999998876 3322       222333333344455


Q ss_pred             cchhHHHHh-cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhc-----cCCHHHHHHH
Q 039015          452 CKSKSMVVE-SGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR-----DGTDRSKKNA  525 (685)
Q Consensus       452 ~~~k~~i~~-~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-----~~~~~~~~~A  525 (685)
                      ++.-..+.+ ...+..++.-+.+. +......++-++.|++..++++..+.+ .|.+..|+++|-     +|+.+.+-.+
T Consensus       304 DeSMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~~ci~~v~-~~~~nkL~~~l~~~~~vdgnV~~qhA~  381 (604)
T KOG4500|consen  304 DESMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDDICIQLVQ-KDFLNKLISCLMQEKDVDGNVERQHAC  381 (604)
T ss_pred             chHHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccchHHHHHHH-HHHHHHHHHHHHHhcCCCccchhHHHH
Confidence            555444444 44899999999988 889999999999999999999999999 999999999884     3567778899


Q ss_pred             HHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChh-cHHHHHhcCC-hHHHHHHhhcCCCh
Q 039015          526 LVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLD-GTIAILHHGA-LDMIMKILDSCTSR  603 (685)
Q Consensus       526 ~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~-~~~~i~~~g~-v~~Lv~lL~~~~s~  603 (685)
                      +.||.||..--.|+..++.+|+++.++..+ ....+.++-.-++.|..+--..+ ...++..+.. +..|++--+++ +.
T Consensus       382 lsALRnl~IPv~nka~~~~aGvteaIL~~l-k~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~-D~  459 (604)
T KOG4500|consen  382 LSALRNLMIPVSNKAHFAPAGVTEAILLQL-KLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSP-DF  459 (604)
T ss_pred             HHHHHhccccCCchhhccccchHHHHHHHH-HhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCC-cc
Confidence            999999999999999999999999999999 45567777777777777654433 3334443322 33344333332 22


Q ss_pred             h-HHHHHHHHHHHHhccCc-HHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHH
Q 039015          604 A-GKEYCVSLLLALCINGG-ANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALI  657 (685)
Q Consensus       604 ~-~~e~a~~~L~~L~~~~~-~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL  657 (685)
                      . +....-..|..+..++- .++...+-+ .|++..++.......-..+..|.-.|
T Consensus       460 aGv~gESnRll~~lIkHs~~kdv~~tvpk-sg~ik~~Vsm~t~~hi~mqnEalVal  514 (604)
T KOG4500|consen  460 AGVAGESNRLLLGLIKHSKYKDVILTVPK-SGGIKEKVSMFTKNHINMQNEALVAL  514 (604)
T ss_pred             chhhhhhhHHHHHHHHhhHhhhhHhhccc-cccHHHHHHHHHHhhHHHhHHHHHHH
Confidence            2 34455666666666632 234444444 66777777776665544444443333

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=2.3e-06  Score=83.62  Aligned_cols=76  Identities=33%  Similarity=0.433  Sum_probs=71.1

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcCccc
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSI  351 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~~~  351 (685)
                      ++|+.++|.|++++|++||+.++|-||+|.-|..++..-...-|.++.+++...++||..|+..|..|.+.|.+..
T Consensus       207 Evpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~~  282 (284)
T KOG4642|consen  207 EVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWAD  282 (284)
T ss_pred             cccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhccccc
Confidence            7899999999999999999999999999999999998756679999999999999999999999999999998753

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.44  E-value=1.8e-07  Score=68.31  Aligned_cols=43  Identities=42%  Similarity=0.901  Sum_probs=38.7

Q ss_pred             cCcCccccCCCceecc-CcccccHHHHHHHHHcCCCCCCCCCcc
Q 039015          282 TCPISLEIMKDPVTLS-TGHTYDRASILKWFRAGNSTCPKTGER  324 (685)
Q Consensus       282 ~CpIc~~~m~dPv~~~-cghtfcr~ci~~~~~~~~~~CP~c~~~  324 (685)
                      .|+||.+.+.+|+.+. |||.||..|+..|+..+...||.|+..
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence            4999999998888775 999999999999999877889999875

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=1.1e-05  Score=84.02  Aligned_cols=185  Identities=20%  Similarity=0.239  Sum_probs=150.8

Q ss_pred             CCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHH
Q 039015          432 SKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPAL  510 (685)
Q Consensus       432 s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~L  510 (685)
                      +.+.+-++.|+.-|..+..+-+|...+...|++.+++..++++ +.++|..|+++|...+.++ ...+.+.+ .|+.+.|
T Consensus        94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~-~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E-~~~L~~L  171 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENS-DAELRELAARVIGTAVQNNPKSQEQVIE-LGALSKL  171 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCC-cHHHHHHHHHHHHHHHhcCHHHHHHHHH-cccHHHH
Confidence            4678889999999999999999999999999999999999999 9999999999999998766 67778887 8999999


Q ss_pred             HHHhccCC-HHHHHHHHHHHHHhcCCC-CcHHHHHhcCChHHHHHHhccC-CChhHHHHHHHHHHHHhcChhcHHHHHhc
Q 039015          511 VDMVRDGT-DRSKKNALVAIFGLLMHS-GNHWRFLAAGAVPLLLNLLTSS-DSEELITDSLAVLATLAEKLDGTIAILHH  587 (685)
Q Consensus       511 v~lL~~~~-~~~~~~A~~aL~nLs~~~-~n~~~iv~~G~v~~Lv~lL~~~-~~~~~~~~al~~L~~La~~~~~~~~i~~~  587 (685)
                      +..+...+ ..++..|+.|+.+|-.+. .....+...++...|..+|.+. .+..++..++..+..|.........+...
T Consensus       172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~  251 (342)
T KOG2160|consen  172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS  251 (342)
T ss_pred             HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            99997654 566789999999999765 5888899999999999999543 56788899999999997754333334443


Q ss_pred             CC-hHHHHHHhhcCCChhHHHHHHHHHHHHhcc
Q 039015          588 GA-LDMIMKILDSCTSRAGKEYCVSLLLALCIN  619 (685)
Q Consensus       588 g~-v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~  619 (685)
                      -+ ...++.+.... ...+.+.++.++..+...
T Consensus       252 ~~f~~~~~~l~~~l-~~~~~e~~l~~~l~~l~~  283 (342)
T KOG2160|consen  252 LGFQRVLENLISSL-DFEVNEAALTALLSLLSE  283 (342)
T ss_pred             hhhhHHHHHHhhcc-chhhhHHHHHHHHHHHHH
Confidence            34 44444466666 778899988888776653

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.39  E-value=1.5e-05  Score=91.00  Aligned_cols=101  Identities=17%  Similarity=0.150  Sum_probs=54.7

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV  458 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i  458 (685)
                      ..+..+.+.|.+.++..+..|++.|.+++  +++....     .+|.+..+|.++++.++..|+.++..+....++  .+
T Consensus        79 l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~  149 (526)
T PF01602_consen   79 LIINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LV  149 (526)
T ss_dssp             HHHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CH
T ss_pred             HHHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HH
Confidence            34555666666666666666666666655  2222111     255566666666666666666666665543221  11


Q ss_pred             HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 039015          459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYI  490 (685)
Q Consensus       459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~L  490 (685)
                      -.. .++.+..+|... ++.++..|+.++..+
T Consensus       150 ~~~-~~~~l~~lL~d~-~~~V~~~a~~~l~~i  179 (526)
T PF01602_consen  150 EDE-LIPKLKQLLSDK-DPSVVSAALSLLSEI  179 (526)
T ss_dssp             HGG-HHHHHHHHTTHS-SHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHhhhccCC-cchhHHHHHHHHHHH
Confidence            112 456666666555 566666666666666

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=98.36  E-value=1.6e-07  Score=72.31  Aligned_cols=44  Identities=36%  Similarity=0.887  Sum_probs=31.7

Q ss_pred             CCccCcCccccCCCceec-cCcccccHHHHHHHHH-cCCCCCCCCC
Q 039015          279 DDFTCPISLEIMKDPVTL-STGHTYDRASILKWFR-AGNSTCPKTG  322 (685)
Q Consensus       279 ~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~-~~~~~CP~c~  322 (685)
                      ..+.|||++..|.+||.. .|||+|++.+|..|+. .+...||..+
T Consensus        10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G   55 (57)
T PF11789_consen   10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG   55 (57)
T ss_dssp             --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred             eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence            359999999999999986 8999999999999994 3467899844

>smart00184 RING Ring finger

Probab=98.35  E-value=4e-07  Score=64.10  Aligned_cols=39  Identities=56%  Similarity=1.126  Sum_probs=36.2

Q ss_pred             CcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCC
Q 039015          283 CPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKT  321 (685)
Q Consensus       283 CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c  321 (685)
                      |+||++...++++++|||.||..|+..|+..+...||.|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            899999999999999999999999999999667789986

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=2.6e-07  Score=97.86  Aligned_cols=71  Identities=27%  Similarity=0.537  Sum_probs=61.3

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcCc
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGV  349 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~  349 (685)
                      ...+++.||||++++.+|++++|||+||+.|+..++. +...||.|+. ... .+.+|..+.+++..+...+..
T Consensus         9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~~~   79 (386)
T KOG2177|consen    9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLRLS   79 (386)
T ss_pred             hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-ccCccHHHHHHHHHHHhcCCc
Confidence            4567899999999999999999999999999999998 6789999996 332 777999999999888766543

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.34  E-value=8.1e-05  Score=81.02  Aligned_cols=217  Identities=14%  Similarity=0.135  Sum_probs=161.0

Q ss_pred             HHHHHHHHhc-CCCHHHHHHHHHHHHHHhhcCCchhhHHHhh-----CCHHHHHHhhcCCCHHHHHHHHHHhhccccCcc
Q 039015          380 LANFISDRLL-EGTSEEKNKVAYEVRLLTKSSIFNRSCLVEV-----GCIPSLLKLLSSKDSSTQENAIAALLNLSKHCK  453 (685)
Q Consensus       380 ~i~~Lv~~L~-s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~-----G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~  453 (685)
                      .+..++..|+ .+.++...-.+..+..+...++..-..|.+.     ....+++.+|..+|.-++..|..+|..|.....
T Consensus        54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~  133 (429)
T cd00256          54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGL  133 (429)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCc
Confidence            4566667664 4566777778888888887665555556654     467777889988999999999999988865432


Q ss_pred             hh-HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccC--CHHHHHHHHHHHH
Q 039015          454 SK-SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDG--TDRSKKNALVAIF  530 (685)
Q Consensus       454 ~k-~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~A~~aL~  530 (685)
                      .+ ......-...-+...|+++.+...+..|+..|..|...+++|..+.+ .++++.|+.+|+..  +.+..-.++-++|
T Consensus       134 ~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~-~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW  212 (429)
T cd00256         134 AKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL-ADGVPTLVKLLSNATLGFQLQYQSIFCIW  212 (429)
T ss_pred             cccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH-ccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            21 11111113345556666654578888899999999999999999988 67899999999763  3577779999999


Q ss_pred             HhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCh-------hcHHHHHhcCChHHHHHHhh
Q 039015          531 GLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKL-------DGTIAILHHGALDMIMKILD  598 (685)
Q Consensus       531 nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~-------~~~~~i~~~g~v~~Lv~lL~  598 (685)
                      -|+.+++....+...|.|+.|+++++....+.+..-++++|.||...+       .....+++.| ++.++..|.
T Consensus       213 lLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~-l~~~l~~L~  286 (429)
T cd00256         213 LLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCK-VLKTLQSLE  286 (429)
T ss_pred             HHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcC-hHHHHHHHh
Confidence            999998877777888999999999977778889999999999998843       1223445544 455556444

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=0.00015  Score=73.58  Aligned_cols=275  Identities=14%  Similarity=0.075  Sum_probs=191.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHh-hCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH
Q 039015          381 ANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVE-VGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV  459 (685)
Q Consensus       381 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~-~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~  459 (685)
                      ...++..|.+.++.++..|+.-+-.+..+  ..+.+... .-.++.+.+++...++  .+.|+++|.|+|.++.-++.++
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll   80 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL   80 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence            45678889999999999999888877753  44444443 3578889999987666  7889999999999999888888


Q ss_pred             hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhc-C----CCcHHHHHHH-hccC-CH-HHHHHHHHHHHH
Q 039015          460 ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGE-N----PEAIPALVDM-VRDG-TD-RSKKNALVAIFG  531 (685)
Q Consensus       460 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~-~----~g~i~~Lv~l-L~~~-~~-~~~~~A~~aL~n  531 (685)
                      .. .+..++..+-+. ....-...+.+|.||+..++....+.. -    ..++.-|+.- ...+ +. .--..-+..+.|
T Consensus        81 ~~-~~k~l~~~~~~p-~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n  158 (353)
T KOG2973|consen   81 QD-LLKVLMDMLTDP-QSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN  158 (353)
T ss_pred             HH-HHHHHHHHhcCc-ccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence            77 888888888877 566677889999999998865554432 1    1334444443 3322 21 223466778899


Q ss_pred             hcCCCCcHHHHHhcCChHHHHHHhccCCChh-HHHHHHHHHHHHhcChhcHHHHHhcCC--hHHHHH-H-----------
Q 039015          532 LLMHSGNHWRFLAAGAVPLLLNLLTSSDSEE-LITDSLAVLATLAEKLDGTIAILHHGA--LDMIMK-I-----------  596 (685)
Q Consensus       532 Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~-~~~~al~~L~~La~~~~~~~~i~~~g~--v~~Lv~-l-----------  596 (685)
                      |+.....|..+.+...++.=.-+-....+.. -+...+++|.|++.+......++..+.  +|.|+. +           
T Consensus       159 ls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm  238 (353)
T KOG2973|consen  159 LSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDM  238 (353)
T ss_pred             HhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHH
Confidence            9999988888887764433222211232222 335578899999888777777766332  333332 1           


Q ss_pred             ---------hhc----CCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcC-ChHHHHHHHHHHHHHHH
Q 039015          597 ---------LDS----CTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQG-SSRASKKASALIRILHE  662 (685)
Q Consensus       597 ---------L~~----~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g-~~~~k~~A~~lL~~l~~  662 (685)
                               +-.    .++|.++..-+.+|..||..  ...++.+.. .|+.+.|.++=... ++.+++++..+.+++.+
T Consensus       239 ~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT--~~GRe~lR~-kgvYpilRElhk~e~ded~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  239 AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT--RAGREVLRS-KGVYPILRELHKWEEDEDIREACEQVVQMLVR  315 (353)
T ss_pred             hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh--hHhHHHHHh-cCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence                     210    12678888999999999987  566777776 78888777776554 56788889999998887


Q ss_pred             hh
Q 039015          663 FY  664 (685)
Q Consensus       663 ~~  664 (685)
                      -.
T Consensus       316 ~e  317 (353)
T KOG2973|consen  316 LE  317 (353)
T ss_pred             cc
Confidence            43

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.31  E-value=2.2e-05  Score=83.07  Aligned_cols=260  Identities=17%  Similarity=0.145  Sum_probs=185.4

Q ss_pred             HHHHHHHHHhcCCCHHH--HHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccCcch-
Q 039015          379 LLANFISDRLLEGTSEE--KNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLSKHCKS-  454 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~--~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~-  454 (685)
                      +.+..|++++.+.+.+.  +.+|.+.|..+.  ..+||..++..| ...++.+-+. +.++.+...+.+|.++.++.+. 
T Consensus       180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~--~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet  256 (832)
T KOG3678|consen  180 GGLDLLLRMFQAPNLETSVRVEAARLLEQIL--VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEET  256 (832)
T ss_pred             chHHHHHHHHhCCchhHHHHHHHHHHHHHHH--hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHH
Confidence            45788899998887765  888998888876  458999999887 5555554433 5678899999999999998754 


Q ss_pred             hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch--hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 039015          455 KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE--EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGL  532 (685)
Q Consensus       455 k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL  532 (685)
                      ...+++.|++..++--.++. ++....+++-+|.|.+.+.  +.+..|.+ ..+-+-|+.+-.+.++-.+-.|+-|...|
T Consensus       257 ~~~Lvaa~~lD~vl~~~rRt-~P~lLRH~ALAL~N~~L~~~~a~qrrmve-Kr~~EWLF~LA~skDel~R~~AClAV~vl  334 (832)
T KOG3678|consen  257 CQRLVAAGGLDAVLYWCRRT-DPALLRHCALALGNCALHGGQAVQRRMVE-KRAAEWLFPLAFSKDELLRLHACLAVAVL  334 (832)
T ss_pred             HHHHHhhcccchheeecccC-CHHHHHHHHHHhhhhhhhchhHHHHHHHH-hhhhhhhhhhhcchHHHHHHHHHHHHhhh
Confidence            88899999999999999988 8999999999999987654  77888887 77788888887777777888999999999


Q ss_pred             cCCCCcHHHHHhcCC---hHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhc-CChHHHHHHhhcCCChhHHHH
Q 039015          533 LMHSGNHWRFLAAGA---VPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHH-GALDMIMKILDSCTSRAGKEY  608 (685)
Q Consensus       533 s~~~~n~~~iv~~G~---v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~-g~v~~Lv~lL~~~~s~~~~e~  608 (685)
                      +.+.+.-..+.++|-   |++|+..+    ++..          .|.+ ....+-... +.++.|+.+|.+.   +....
T Consensus       335 at~KE~E~~VrkS~TlaLVEPlva~~----DP~~----------FARD-~hd~aQG~~~d~LqRLvPlLdS~---R~EAq  396 (832)
T KOG3678|consen  335 ATNKEVEREVRKSGTLALVEPLVASL----DPGR----------FARD-AHDYAQGRGPDDLQRLVPLLDSN---RLEAQ  396 (832)
T ss_pred             hhhhhhhHHHhhccchhhhhhhhhcc----Ccch----------hhhh-hhhhhccCChHHHHHhhhhhhcc---hhhhh
Confidence            999988777777774   55555555    2211          1110 000000011 1267788888743   33344


Q ss_pred             HHHHHHHHhcc---CcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 039015          609 CVSLLLALCIN---GGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHE  662 (685)
Q Consensus       609 a~~~L~~L~~~---~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~  662 (685)
                      ++++....+..   ..+.-..+.. +-|+++.|.++.++.+..+..-|...|.++.+
T Consensus       397 ~i~AF~l~~EAaIKs~Q~K~kVFs-eIGAIQaLKevaSS~d~vaakfAseALtviGE  452 (832)
T KOG3678|consen  397 CIGAFYLCAEAAIKSLQGKTKVFS-EIGAIQALKEVASSPDEVAAKFASEALTVIGE  452 (832)
T ss_pred             hhHHHHHHHHHHHHHhccchhHHH-HHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence            45544322211   1011122233 36889999999998888888889999999876

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.28  E-value=6.2e-06  Score=73.60  Aligned_cols=124  Identities=18%  Similarity=0.155  Sum_probs=108.9

Q ss_pred             cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHH
Q 039015          461 SGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHW  540 (685)
Q Consensus       461 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~  540 (685)
                      .+.+..||.-.+...+.++++...+-|.|.+.++-|-..+.+ ..+++..|+-|...+...+.-++..|+|||.+..|..
T Consensus        15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrq-l~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~   93 (173)
T KOG4646|consen   15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQ-LDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK   93 (173)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHH-hhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH
Confidence            466788888888776899999999999999999988888887 8999999999999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCh-hcHHHHHh
Q 039015          541 RFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKL-DGTIAILH  586 (685)
Q Consensus       541 ~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~-~~~~~i~~  586 (685)
                      -+++++++|..+..+ +++.+.....|+..|..|+... ..+..+..
T Consensus        94 ~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~  139 (173)
T KOG4646|consen   94 FIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGERTERDELLS  139 (173)
T ss_pred             HHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence            999999999999999 7888888888888898887643 34455554

>PHA02926 zinc finger-like protein; Provisional

Probab=98.27  E-value=5.6e-07  Score=86.55  Aligned_cols=51  Identities=22%  Similarity=0.420  Sum_probs=41.0

Q ss_pred             CCCCCccCcCccccCCC---------ceeccCcccccHHHHHHHHHcC-----CCCCCCCCcccc
Q 039015          276 LTPDDFTCPISLEIMKD---------PVTLSTGHTYDRASILKWFRAG-----NSTCPKTGERLQ  326 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~d---------Pv~~~cghtfcr~ci~~~~~~~-----~~~CP~c~~~l~  326 (685)
                      ...++..|+||++...+         ++..+|+|+||..||.+|....     ...||.||..+.
T Consensus       166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            34567999999988644         3556899999999999999752     356999999875

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=1.9e-07  Score=95.31  Aligned_cols=71  Identities=25%  Similarity=0.441  Sum_probs=62.1

Q ss_pred             CCCCCccCcCccccCCCceec-cCcccccHHHHHHHHHcCCCCCCCCCccccC-CCCcccHHHHhhHHHHHHh
Q 039015          276 LTPDDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRAGNSTCPKTGERLQS-KELLVNLVLKRIIQDWSVD  346 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~-~~l~~n~~l~~~i~~~~~~  346 (685)
                      .+..++.||||+.+++.-+++ .|+|.||..||.+-+..|+..||.|++.+.. ..|.++.....+|.+....
T Consensus        39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~~s  111 (381)
T KOG0311|consen   39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIYPS  111 (381)
T ss_pred             HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHhcc
Confidence            567789999999999999988 5999999999999999999999999999854 4788888888888776444

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.24  E-value=0.00028  Score=82.89  Aligned_cols=277  Identities=16%  Similarity=0.199  Sum_probs=173.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhh-CCHHHHHHhhc----CCCHHHHHHHHHHhhccccCcch-
Q 039015          381 ANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEV-GCIPSLLKLLS----SKDSSTQENAIAALLNLSKHCKS-  454 (685)
Q Consensus       381 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~-G~ip~Lv~lL~----s~~~~~~~~A~~aL~nLs~~~~~-  454 (685)
                      .+.+.+-+..++..+|..|++++..++...+.+....... ..+|.++..|.    .+|.+....++.+|-.|.....- 
T Consensus       161 ~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~  240 (1075)
T KOG2171|consen  161 LRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKL  240 (1075)
T ss_pred             HHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHH
Confidence            3444455555555599999999999887665555554443 56777776554    35666667777777777654422 


Q ss_pred             -hHHHHhcCcHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCchhHHHH----hh---------------------------
Q 039015          455 -KSMVVESGGLDFIVDMVKKG-LKVEARQHAAATLFYIASIEEYRKL----IG---------------------------  501 (685)
Q Consensus       455 -k~~i~~~g~i~~Lv~lL~~~-~~~e~~~~Aa~~L~~Ls~~~~~~~~----i~---------------------------  501 (685)
                       +..+  ...|.....+.++. .+..+|..|...|..++.......+    ++                           
T Consensus       241 l~~~l--~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~d  318 (1075)
T KOG2171|consen  241 LRPHL--SQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLD  318 (1075)
T ss_pred             HHHHH--HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccc
Confidence             2222  22344444444432 2456666666666666554210000    00                           


Q ss_pred             -------------------cCCC---c----HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHh--cCChHHHHH
Q 039015          502 -------------------ENPE---A----IPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLA--AGAVPLLLN  553 (685)
Q Consensus       502 -------------------~~~g---~----i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~--~G~v~~Lv~  553 (685)
                                         ..-|   .    ++.+-.+|++.+..-+..|+.||..++....  ..|..  ..+++..++
T Consensus       319 ed~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~--~~m~~~l~~Il~~Vl~  396 (1075)
T KOG2171|consen  319 EDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCS--DVMIGNLPKILPIVLN  396 (1075)
T ss_pred             cccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccH--HHHHHHHHHHHHHHHh
Confidence                               0111   2    3333344556666777777777766643322  11211  235666777


Q ss_pred             HhccCCChhHHHHHHHHHHHHhcC--hhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhc
Q 039015          554 LLTSSDSEELITDSLAVLATLAEK--LDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKS  631 (685)
Q Consensus       554 lL~~~~~~~~~~~al~~L~~La~~--~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~  631 (685)
                      .| .|+++.++-.|+.++..++.+  ++.... ...-.++.|+..+.+..+++++.+|+++|.++....+.....-..  
T Consensus       397 ~l-~DphprVr~AA~naigQ~stdl~p~iqk~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL--  472 (1075)
T KOG2171|consen  397 GL-NDPHPRVRYAALNAIGQMSTDLQPEIQKK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL--  472 (1075)
T ss_pred             hc-CCCCHHHHHHHHHHHHhhhhhhcHHHHHH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH--
Confidence            77 789999999999999999986  332222 222346788887776558999999999999999887666665555  


Q ss_pred             CCcHH-HHHHHHhcCChHHHHHHHHHHHHHHHhhc
Q 039015          632 PSLMG-SLYSLLSQGSSRASKKASALIRILHEFYE  665 (685)
Q Consensus       632 ~g~i~-~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~  665 (685)
                      .+++. .|..|.+++++.+++.+.+.+.-.....+
T Consensus       473 d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~  507 (1075)
T KOG2171|consen  473 DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ  507 (1075)
T ss_pred             HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence            46677 78888899999999998888776655433

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.24  E-value=9e-05  Score=84.57  Aligned_cols=254  Identities=19%  Similarity=0.163  Sum_probs=157.9

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHH
Q 039015          378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSM  457 (685)
Q Consensus       378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~  457 (685)
                      ...++.+.+.+.++++.+|.+|+-++..+.+.+++   .+... .++.+..+|.+.|+.++..|+.++..+ ..++.-..
T Consensus       113 ~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~  187 (526)
T PF01602_consen  113 EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK  187 (526)
T ss_dssp             HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT
T ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh
Confidence            44577788888999999999999999999876544   23333 689999999999999999999999999 11111100


Q ss_pred             HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 039015          458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG  537 (685)
Q Consensus       458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~  537 (685)
                      -.-...+..|..++... ++-.+...+.+|..++........-   ...++.+..++++.++.+.-.|+.++..+.....
T Consensus       188 ~~~~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~  263 (526)
T PF01602_consen  188 SLIPKLIRILCQLLSDP-DPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE  263 (526)
T ss_dssp             THHHHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH
T ss_pred             hhHHHHHHHhhhccccc-chHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH
Confidence            11133344555555555 7777888888888776644322210   2356777777777667777777777777655444


Q ss_pred             cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhh-cCCChhHHHHHHHHHHHH
Q 039015          538 NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILD-SCTSRAGKEYCVSLLLAL  616 (685)
Q Consensus       538 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~-~~~s~~~~e~a~~~L~~L  616 (685)
                           .-..+++.|+.+| .+++..++-.++..|..++...  ...+ .  .....+..+. +. +..++..++.+|..+
T Consensus       264 -----~~~~~~~~L~~lL-~s~~~nvr~~~L~~L~~l~~~~--~~~v-~--~~~~~~~~l~~~~-d~~Ir~~~l~lL~~l  331 (526)
T PF01602_consen  264 -----LLQKAINPLIKLL-SSSDPNVRYIALDSLSQLAQSN--PPAV-F--NQSLILFFLLYDD-DPSIRKKALDLLYKL  331 (526)
T ss_dssp             -----HHHHHHHHHHHHH-TSSSHHHHHHHHHHHHHHCCHC--HHHH-G--THHHHHHHHHCSS-SHHHHHHHHHHHHHH
T ss_pred             -----HHHhhHHHHHHHh-hcccchhehhHHHHHHHhhccc--chhh-h--hhhhhhheecCCC-ChhHHHHHHHHHhhc
Confidence                 3344677788888 4666777777888777777643  2222 2  2222333444 44 777777888888777


Q ss_pred             hccCcHHHHHHHHhcCCcHHHHHHHHh-cCChHHHHHHHHHHHHHH
Q 039015          617 CINGGANVVALLVKSPSLMGSLYSLLS-QGSSRASKKASALIRILH  661 (685)
Q Consensus       617 ~~~~~~~~~~~l~~~~g~i~~L~~Ll~-~g~~~~k~~A~~lL~~l~  661 (685)
                      +..  ..+...       ++-|...+. .++...++.+...+..+.
T Consensus       332 ~~~--~n~~~I-------l~eL~~~l~~~~d~~~~~~~i~~I~~la  368 (526)
T PF01602_consen  332 ANE--SNVKEI-------LDELLKYLSELSDPDFRRELIKAIGDLA  368 (526)
T ss_dssp             --H--HHHHHH-------HHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred             ccc--cchhhH-------HHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence            765  333332       224445553 335545554444444333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=1.6e-05  Score=89.81  Aligned_cols=57  Identities=16%  Similarity=0.348  Sum_probs=51.2

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcc
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLV  332 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~  332 (685)
                      ....-++||.|..-.+|-|++.|||.||..||++.+....+.||.|+..+...++.+
T Consensus       639 ~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~  695 (698)
T KOG0978|consen  639 EYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR  695 (698)
T ss_pred             HHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence            445669999999999999999999999999999999988999999999998777654

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=7.4e-07  Score=95.62  Aligned_cols=72  Identities=29%  Similarity=0.485  Sum_probs=58.1

Q ss_pred             CCCccCcCccccCCCceeccCcccccHHHHHHHHHc----CCCCCCCCCccccCCCCccc----HHHHhhHHHHHHhcCc
Q 039015          278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRA----GNSTCPKTGERLQSKELLVN----LVLKRIIQDWSVDNGV  349 (685)
Q Consensus       278 ~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~----~~~~CP~c~~~l~~~~l~~n----~~l~~~i~~~~~~~~~  349 (685)
                      ..+..||||++...-|+.+.|||.||..||..+|..    +...||+|+..+...++.|-    ..-+.-+..++..||.
T Consensus       184 ~t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng~  263 (513)
T KOG2164|consen  184 STDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNGI  263 (513)
T ss_pred             CcCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccCC
Confidence            338999999999999999999999999999999985    46689999999987666553    2333446777777773

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.20  E-value=1.7e-06  Score=88.72  Aligned_cols=62  Identities=23%  Similarity=0.465  Sum_probs=46.5

Q ss_pred             CCccCcCcccc-CCCce----eccCcccccHHHHHHHHHcCCCCCCCCCccccCCC----CcccHHHHhhH
Q 039015          279 DDFTCPISLEI-MKDPV----TLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKE----LLVNLVLKRII  340 (685)
Q Consensus       279 ~~~~CpIc~~~-m~dPv----~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~----l~~n~~l~~~i  340 (685)
                      ++..||+|..- +..|-    +.+|||+||.+|+...|..|...||.|+..+....    +.++..+..-|
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV   72 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEV   72 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHH
Confidence            45789999972 33442    22799999999999999888889999999988766    44455544444

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=98.19  E-value=8.5e-07  Score=90.24  Aligned_cols=66  Identities=18%  Similarity=0.359  Sum_probs=56.7

Q ss_pred             CCCCCccCcCccccCCCceec-cCcccccHHHHHHHHHcCCCCCCCCCccccCC----CCcccHHHHhhHHH
Q 039015          276 LTPDDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRAGNSTCPKTGERLQSK----ELLVNLVLKRIIQD  342 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~----~l~~n~~l~~~i~~  342 (685)
                      ++.....|++|..+|.|+.++ .|-||||++||.+++.. ..+||.|...+-..    .+.++..|+.++..
T Consensus        11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyK   81 (331)
T KOG2660|consen   11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYK   81 (331)
T ss_pred             hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHH
Confidence            567789999999999999987 69999999999999998 89999999877544    46778888877743

>PF05536 Neurochondrin: Neurochondrin

Probab=98.17  E-value=6.6e-05  Score=85.18  Aligned_cols=197  Identities=23%  Similarity=0.272  Sum_probs=141.8

Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh----HHHHhhcCCCcHHHHHHHhccCC-------HHHHHHHHHHHHH
Q 039015          463 GLDFIVDMVKKGLKVEARQHAAATLFYIASIEE----YRKLIGENPEAIPALVDMVRDGT-------DRSKKNALVAIFG  531 (685)
Q Consensus       463 ~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~----~~~~i~~~~g~i~~Lv~lL~~~~-------~~~~~~A~~aL~n  531 (685)
                      .++..+.+|+.. +++.|-.+...+.++...++    .+..|.+ .=+.+.|-+||+.+.       ...+.-|+..|..
T Consensus         6 ~l~~c~~lL~~~-~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~-aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~   83 (543)
T PF05536_consen    6 SLEKCLSLLKSA-DDTERFAGLLLVTKLLDADDEDSQTRRRVFE-AIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA   83 (543)
T ss_pred             HHHHHHHHhccC-CcHHHHHHHHHHHHcCCCchhhHHHHHHHHH-hcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence            467778899988 77888888888889887654    2445666 444799999998732       4567788999999


Q ss_pred             hcCCCCc--HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHH
Q 039015          532 LLMHSGN--HWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYC  609 (685)
Q Consensus       532 Ls~~~~n--~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a  609 (685)
                      +|..++.  ...++..  ||.|++.+...++..+...|+.+|..++.+++|+.++++.|+++.|.+++.+  ++...+.|
T Consensus        84 f~~~~~~a~~~~~~~~--IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~A  159 (543)
T PF05536_consen   84 FCRDPELASSPQMVSR--IPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN--QSFQMEIA  159 (543)
T ss_pred             HcCChhhhcCHHHHHH--HHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHH
Confidence            9997764  4556654  9999999954444499999999999999999999999999999999998876  67889999


Q ss_pred             HHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhhccc
Q 039015          610 VSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYERH  667 (685)
Q Consensus       610 ~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~~~  667 (685)
                      +.+|.+++...+.+....  ...+....+..+.........+.+-.++..|..+-.+.
T Consensus       160 l~lL~~Lls~~~~~~~~~--~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~  215 (543)
T PF05536_consen  160 LNLLLNLLSRLGQKSWAE--DSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRS  215 (543)
T ss_pred             HHHHHHHHHhcchhhhhh--hHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence            999999998765332221  11122222333333333333344555666666665444

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.17  E-value=1.4e-06  Score=63.69  Aligned_cols=41  Identities=24%  Similarity=0.446  Sum_probs=35.2

Q ss_pred             cCcCccccC---CCceeccCcccccHHHHHHHHHcCCCCCCCCCc
Q 039015          282 TCPISLEIM---KDPVTLSTGHTYDRASILKWFRAGNSTCPKTGE  323 (685)
Q Consensus       282 ~CpIc~~~m---~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~  323 (685)
                      .|++|.+.+   ..|++++|||+||..|+.++. .....||.|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence            489999998   357788999999999999998 44779999974

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=4.1e-05  Score=86.41  Aligned_cols=147  Identities=19%  Similarity=0.220  Sum_probs=122.1

Q ss_pred             CCcHHHHHHHhccC-CHHHHHHHHHHHHHhcC-CCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcH
Q 039015          504 PEAIPALVDMVRDG-TDRSKKNALVAIFGLLM-HSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGT  581 (685)
Q Consensus       504 ~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~  581 (685)
                      ...+|.|+.+|+.. +.+....|+.||.+|+. .++....+|+.|+||.|+.-|..-...++.++++.+|..|+..  .-
T Consensus       210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H~  287 (1051)
T KOG0168|consen  210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--HP  287 (1051)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--cc
Confidence            56899999999875 58999999999999994 7889999999999999999886777899999999999999873  34


Q ss_pred             HHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHH
Q 039015          582 IAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASAL  656 (685)
Q Consensus       582 ~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~l  656 (685)
                      .+|+++|++...+..+.-= +-.++..|+++-.|.|..-..+....+.+   ++|.|..+++..+.+.-+.+.-.
T Consensus       288 ~AiL~AG~l~a~LsylDFF-Si~aQR~AlaiaaN~Cksi~sd~f~~v~e---alPlL~~lLs~~D~k~ies~~ic  358 (1051)
T KOG0168|consen  288 KAILQAGALSAVLSYLDFF-SIHAQRVALAIAANCCKSIRSDEFHFVME---ALPLLTPLLSYQDKKPIESVCIC  358 (1051)
T ss_pred             HHHHhcccHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCccchHHHH---HHHHHHHHHhhccchhHHHHHHH
Confidence            6789999999998877765 77899999999999998665554555544   39999999999887765544433

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=1.2e-06  Score=86.46  Aligned_cols=54  Identities=22%  Similarity=0.471  Sum_probs=46.9

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHH-HHHcCCCCCCCCCccccCCC
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILK-WFRAGNSTCPKTGERLQSKE  329 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~-~~~~~~~~CP~c~~~l~~~~  329 (685)
                      .+..++.|+||++.+.+|+.++|||.||..||.. |-......||.||+......
T Consensus       211 ip~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~  265 (271)
T COG5574         211 IPLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK  265 (271)
T ss_pred             ccccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence            3477999999999999999999999999999999 87775667999998775543

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.02  E-value=0.00025  Score=78.59  Aligned_cols=201  Identities=14%  Similarity=0.121  Sum_probs=143.8

Q ss_pred             HhcCCCHHHHHHHHHHHHHHh---hcC-CchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcch-hHHHHhc
Q 039015          387 RLLEGTSEEKNKVAYEVRLLT---KSS-IFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS-KSMVVES  461 (685)
Q Consensus       387 ~L~s~~~~~~~~a~~~L~~La---~~~-~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~~i~~~  461 (685)
                      .+..+.++.+.-++.....+.   .+. ..+|..+-+.-....+..+.-..|......|+-.+.+++..-.. +.-....
T Consensus       339 sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~  418 (678)
T KOG1293|consen  339 SLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRN  418 (678)
T ss_pred             HHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence            344555555554444432222   111 23445555544444444445557888888888888888866543 5555678


Q ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-chhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHH
Q 039015          462 GGLDFIVDMVKKGLKVEARQHAAATLFYIAS-IEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHW  540 (685)
Q Consensus       462 g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~  540 (685)
                      .+..++|++|..+ ...+...+.++|.||.. ...+|..+.. .|+|+.|..++.+.+...++.++++|+++..+.++..
T Consensus       419 dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~-~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~  496 (678)
T KOG1293|consen  419 DVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLR-NNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEE  496 (678)
T ss_pred             hhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHH-cCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHH
Confidence            8999999999888 88889999999999975 4488999988 9999999999999999999999999999998877544


Q ss_pred             HH-HhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-ChhcHHHHHhcCC
Q 039015          541 RF-LAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE-KLDGTIAILHHGA  589 (685)
Q Consensus       541 ~i-v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~g~  589 (685)
                      +. ..+.+-..++..+-++++.++++.|+.+|.||.- +.+..+-+++.-+
T Consensus       497 k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~~~  547 (678)
T KOG1293|consen  497 KFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEKFK  547 (678)
T ss_pred             HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHhhh
Confidence            43 3344444444444488999999999999999955 4555666666543

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=0.0004  Score=79.81  Aligned_cols=259  Identities=19%  Similarity=0.171  Sum_probs=179.7

Q ss_pred             HHHHHHHh-cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH
Q 039015          381 ANFISDRL-LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV  459 (685)
Q Consensus       381 i~~Lv~~L-~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~  459 (685)
                      .+.+...| ..+++..+.-|+..+..+.. +.+.-..+++.|.+..|+.+|.+ -+..++.++..|..|+.+.+-...-+
T Consensus      1773 F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~ 1850 (2235)
T KOG1789|consen 1773 FPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEAL 1850 (2235)
T ss_pred             cHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            34444455 34567788888888777664 55666678888999999999966 68889999999999999988766667


Q ss_pred             hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch--hHHHHhh--c---------------------------------
Q 039015          460 ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE--EYRKLIG--E---------------------------------  502 (685)
Q Consensus       460 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~--~---------------------------------  502 (685)
                      +.|++.-|..++-...+...|..||..|..|..++  ..|..|-  +                                 
T Consensus      1851 ~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn 1930 (2235)
T KOG1789|consen 1851 EHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWN 1930 (2235)
T ss_pred             hcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccC
Confidence            88998888888876646777888888887775443  1111110  0                                 


Q ss_pred             ----------------------------------------------------------------------CCCcHHHHHH
Q 039015          503 ----------------------------------------------------------------------NPEAIPALVD  512 (685)
Q Consensus       503 ----------------------------------------------------------------------~~g~i~~Lv~  512 (685)
                                                                                            -.|.++.+..
T Consensus      1931 ~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~le 2010 (2235)
T KOG1789|consen 1931 EVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLE 2010 (2235)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHH
Confidence                                                                                  0112223333


Q ss_pred             HhccCCHHH--HHHHHHHHHHhcC-CCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCC
Q 039015          513 MVRDGTDRS--KKNALVAIFGLLM-HSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGA  589 (685)
Q Consensus       513 lL~~~~~~~--~~~A~~aL~nLs~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~  589 (685)
                      ++...++..  ..--..|+..|.. ++.-...+-.-|.+|.++..+ ...+..+-..|+.+|..|+.+.-..+++.+...
T Consensus      2011 lm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am-~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~ 2089 (2235)
T KOG1789|consen 2011 LMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAM-CLQNTSAPRSAIRVLHELSENQFCCDAMAQLPC 2089 (2235)
T ss_pred             HhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHH-HhcCCcCcHHHHHHHHHHhhccHHHHHHhcccc
Confidence            333322211  1111123333333 444455566678999999887 333444557899999999999999999988888


Q ss_pred             hHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcC
Q 039015          590 LDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQG  645 (685)
Q Consensus       590 v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g  645 (685)
                      +..++..|..  .+.....|+.+|-.+........+....+ .|++|.|+.|+...
T Consensus      2090 i~~~m~~mkK--~~~~~GLA~EalkR~~~r~~~eLVAQ~LK-~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2090 IDGIMKSMKK--QPSLMGLAAEALKRLMKRNTGELVAQMLK-CGLVPYLLQLLDSS 2142 (2235)
T ss_pred             chhhHHHHHh--cchHHHHHHHHHHHHHHHhHHHHHHHHhc-cCcHHHHHHHhccc
Confidence            8888886664  45566689999999888776666777777 89999999999754

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.98  E-value=6.1e-06  Score=67.38  Aligned_cols=39  Identities=33%  Similarity=0.722  Sum_probs=32.2

Q ss_pred             CcCccccCCCc------------e-eccCcccccHHHHHHHHHcCCCCCCCCC
Q 039015          283 CPISLEIMKDP------------V-TLSTGHTYDRASILKWFRAGNSTCPKTG  322 (685)
Q Consensus       283 CpIc~~~m~dP------------v-~~~cghtfcr~ci~~~~~~~~~~CP~c~  322 (685)
                      |+||++.+.+|            + ..+|||.|...||.+|+.. +.+||.||
T Consensus        22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR   73 (73)
T PF12678_consen   22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR   73 (73)
T ss_dssp             ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred             ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence            99999999544            2 3379999999999999987 66999996

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=0.00099  Score=70.71  Aligned_cols=220  Identities=18%  Similarity=0.213  Sum_probs=169.0

Q ss_pred             HHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc------chh----HHHHhcCcHHHH
Q 039015          398 KVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC------KSK----SMVVESGGLDFI  467 (685)
Q Consensus       398 ~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~------~~k----~~i~~~g~i~~L  467 (685)
                      ..+..+..+|. -|+--..+++.++++.|+.+|.+.|.++....+..|..|+..+      ++.    ..+++.++++.|
T Consensus       103 d~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL  181 (536)
T KOG2734|consen  103 DIIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL  181 (536)
T ss_pred             HHHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence            44556677774 7788888999999999999999999999999999999997543      222    234578999999


Q ss_pred             HHHhcCC-----CCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccC-C-HHHHHHHHHHHHHhcCCCC-c
Q 039015          468 VDMVKKG-----LKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDG-T-DRSKKNALVAIFGLLMHSG-N  538 (685)
Q Consensus       468 v~lL~~~-----~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~-~-~~~~~~A~~aL~nLs~~~~-n  538 (685)
                      ++-+.+=     .......++.+++-||...+ +++..+.+ .|.+..|+.-+... . ...+..|...|.-+-.+.. |
T Consensus       182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e-~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~  260 (536)
T KOG2734|consen  182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVE-QGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDEN  260 (536)
T ss_pred             HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHH-hhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchh
Confidence            9988743     01233456777777876544 77888888 68888888765543 2 4567788888888776554 8


Q ss_pred             HHHHHhcCChHHHHHHhc----cC----CChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHH
Q 039015          539 HWRFLAAGAVPLLLNLLT----SS----DSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCV  610 (685)
Q Consensus       539 ~~~iv~~G~v~~Lv~lL~----~~----~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~  610 (685)
                      +.....-.++..|++-+.    .+    +..++.++....|+.+...+.++..++...|++...-+++.  ....+..|+
T Consensus       261 ~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~--Kk~sr~Sal  338 (536)
T KOG2734|consen  261 RKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE--KKVSRGSAL  338 (536)
T ss_pred             hhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH--HHHhhhhHH
Confidence            888888899999988774    12    24678899999999999999999999999999877767775  556778899


Q ss_pred             HHHHHHhccCc
Q 039015          611 SLLLALCINGG  621 (685)
Q Consensus       611 ~~L~~L~~~~~  621 (685)
                      .+|-....+.+
T Consensus       339 kvLd~am~g~~  349 (536)
T KOG2734|consen  339 KVLDHAMFGPE  349 (536)
T ss_pred             HHHHHHHhCCC
Confidence            99988776653

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.96  E-value=0.00025  Score=83.24  Aligned_cols=246  Identities=14%  Similarity=0.165  Sum_probs=160.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcc-hhHHH
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCK-SKSMV  458 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~-~k~~i  458 (685)
                      ..+.+-.+|.|.+...|..|+-+|..++.+..+.-... -...++..+..|.++++.+|-.|+.++..+|.+=. .-..-
T Consensus       349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~-l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~  427 (1075)
T KOG2171|consen  349 LFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGN-LPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK  427 (1075)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHH-HHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence            45677778899999999999999999987543322221 12567778889999999999999999999997642 22333


Q ss_pred             HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHH-HHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 039015          459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIP-ALVDMVRDGTDRSKKNALVAIFGLLMHSG  537 (685)
Q Consensus       459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~-~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~  537 (685)
                      ...-.++.|+..+.+..++.++.+|+++|.|++..........=-++.+. .|..+++++++.+++.+++||...+...+
T Consensus       428 ~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~  507 (1075)
T KOG2171|consen  428 HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ  507 (1075)
T ss_pred             HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence            34556778999998776889999999999999876543222211123444 23335567889999999999998875544


Q ss_pred             cHHHHHhcCChHHHHHHhccCCChhHHH---HHHHHHHHHhcChhcHHHHHhcC--ChHHHHHH---hhcCCChhHHHHH
Q 039015          538 NHWRFLAAGAVPLLLNLLTSSDSEELIT---DSLAVLATLAEKLDGTIAILHHG--ALDMIMKI---LDSCTSRAGKEYC  609 (685)
Q Consensus       538 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~---~al~~L~~La~~~~~~~~i~~~g--~v~~Lv~l---L~~~~s~~~~e~a  609 (685)
                      ..-.=.=.-.+|.|.+.|.+..+++.++   +...++..++. .-|++.+...-  -++.+..+   .... ++..+++.
T Consensus       508 ~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~-AVGke~F~~~a~eliqll~~~~~~~~~~-dd~~~sy~  585 (1075)
T KOG2171|consen  508 EKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIAR-AVGKEKFLPLAEELIQLLLELQGSDQDD-DDPLRSYM  585 (1075)
T ss_pred             hhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHH-HhhhhhhhHhHHHHHHHHHhhcccchhh-ccccHHHH
Confidence            3322222336788888886544344443   33333333332 34445543321  13333333   1112 56677888


Q ss_pred             HHHHHHHhccCcHHHHHHH
Q 039015          610 VSLLLALCINGGANVVALL  628 (685)
Q Consensus       610 ~~~L~~L~~~~~~~~~~~l  628 (685)
                      .+...++|+--+++....+
T Consensus       586 ~~~warmc~ilg~~F~p~L  604 (1075)
T KOG2171|consen  586 IAFWARMCRILGDDFAPFL  604 (1075)
T ss_pred             HHHHHHHHHHhchhhHhHH
Confidence            8888899986666655554

>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=6.6e-05  Score=82.00  Aligned_cols=73  Identities=30%  Similarity=0.408  Sum_probs=68.0

Q ss_pred             CCCCCccCcCccccCCCceecc-CcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcCc
Q 039015          276 LTPDDFTCPISLEIMKDPVTLS-TGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGV  349 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~-cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~  349 (685)
                      ++|++|.-|+...+|+|||+++ +|-+.+|+-|..++-. ..+.|.-|.+++.++++||..|++.|..|.+..+.
T Consensus       850 DvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~~  923 (929)
T COG5113         850 DVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCKGQ  923 (929)
T ss_pred             CCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHHhcccc
Confidence            8999999999999999999995 8899999999999887 77899999999999999999999999999877664

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.92  E-value=0.0015  Score=66.60  Aligned_cols=236  Identities=17%  Similarity=0.176  Sum_probs=163.7

Q ss_pred             hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchh
Q 039015          376 AMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSK  455 (685)
Q Consensus       376 ~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k  455 (685)
                      ..+..++.+.+++....+  -..|+.+|-+++. +...|..+... .+..++..+..+........+..|.||+.+++.-
T Consensus        41 ~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~  116 (353)
T KOG2973|consen   41 YSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEV  116 (353)
T ss_pred             chhhhHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHH
Confidence            344567878888765554  5568888999997 77788888887 8888888887777788889999999999998763


Q ss_pred             HHH-H--h----cCcHHHHHHHhcCCCCHHH-HHHHHHHHHHhcCchhHHHHhhcCCCcHH--HHHHHhccCCHHH-HHH
Q 039015          456 SMV-V--E----SGGLDFIVDMVKKGLKVEA-RQHAAATLFYIASIEEYRKLIGENPEAIP--ALVDMVRDGTDRS-KKN  524 (685)
Q Consensus       456 ~~i-~--~----~g~i~~Lv~lL~~~~~~e~-~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~--~Lv~lL~~~~~~~-~~~  524 (685)
                      ..+ .  .    .|.++....+...+.+..+ -.+.|.++.+|+.....|..+.. ...++  .|+.+ .+.+..+ +..
T Consensus       117 ~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~-~k~~p~~kll~f-t~~~s~vRr~G  194 (353)
T KOG2973|consen  117 AALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLE-PKRFPDQKLLPF-TSEDSQVRRGG  194 (353)
T ss_pred             HHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhhhHhcc-hhhhhHhhhhcc-cccchhhhccc
Confidence            333 2  2    5667777777776634222 35677888899999999998877 54332  22222 2333344 446


Q ss_pred             HHHHHHHhcCCCCcHHHHHhcCChHHHHHHhc----------------------------cCCChhHHHHHHHHHHHHhc
Q 039015          525 ALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLT----------------------------SSDSEELITDSLAVLATLAE  576 (685)
Q Consensus       525 A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~----------------------------~~~~~~~~~~al~~L~~La~  576 (685)
                      .+.+|.|.|.+..++..+++.+ +..|..+|.                            .++++.++..-+-+|..|+.
T Consensus       195 vagtlkN~cFd~~~h~~lL~e~-~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca  273 (353)
T KOG2973|consen  195 VAGTLKNCCFDAKLHEVLLDES-INLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA  273 (353)
T ss_pred             hHHHHHhhhccchhHHHHhcch-HHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh
Confidence            7889999999999998888743 333333221                            13568899999999999999


Q ss_pred             ChhcHHHHHhcCChHHHHHHhhcC-CChhHHHHHHHHHHHHhcc
Q 039015          577 KLDGTIAILHHGALDMIMKILDSC-TSRAGKEYCVSLLLALCIN  619 (685)
Q Consensus       577 ~~~~~~~i~~~g~v~~Lv~lL~~~-~s~~~~e~a~~~L~~L~~~  619 (685)
                      ...||+.+...|+-|.+-+ ++.+ ..+...+.+-.+...|...
T Consensus       274 T~~GRe~lR~kgvYpilRE-lhk~e~ded~~~ace~vvq~Lv~~  316 (353)
T KOG2973|consen  274 TRAGREVLRSKGVYPILRE-LHKWEEDEDIREACEQVVQMLVRL  316 (353)
T ss_pred             hhHhHHHHHhcCchHHHHH-HhcCCCcHHHHHHHHHHHHHHHhc
Confidence            9999999988766554444 4433 3566666655555555543

>PF05536 Neurochondrin: Neurochondrin

Probab=97.90  E-value=0.00057  Score=77.64  Aligned_cols=234  Identities=18%  Similarity=0.117  Sum_probs=163.4

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCch---hhHHHhhCCHHHHHHhhcC-------CCHHHHHHHHHHhhccc
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFN---RSCLVEVGCIPSLLKLLSS-------KDSSTQENAIAALLNLS  449 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~---r~~i~~~G~ip~Lv~lL~s-------~~~~~~~~A~~aL~nLs  449 (685)
                      .++..+..|++.+.+.|..++-.+..+.+.++.+   ++.+.++=+.+.|-++|.+       +....+.-|+++|..++
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            4677789999888888999999999999866633   4457888667888899988       34678889999999999


Q ss_pred             cCcchh--HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHH
Q 039015          450 KHCKSK--SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALV  527 (685)
Q Consensus       450 ~~~~~k--~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~  527 (685)
                      .+++..  ..|+  +-||.|++++.++...++...|..+|..++..++.+..+.+ .|+|+.|++.+.+ .+.....|+.
T Consensus        86 ~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~-~g~v~~L~ei~~~-~~~~~E~Al~  161 (543)
T PF05536_consen   86 RDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLE-SGAVPALCEIIPN-QSFQMEIALN  161 (543)
T ss_pred             CChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHh-cCCHHHHHHHHHh-CcchHHHHHH
Confidence            877653  4443  56999999999883449999999999999999999999999 9999999999988 6667889999


Q ss_pred             HHHHhcCCCCcHHHHHhc----CChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcH--HHHHhcCC----hHHHHHHh
Q 039015          528 AIFGLLMHSGNHWRFLAA----GAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGT--IAILHHGA----LDMIMKIL  597 (685)
Q Consensus       528 aL~nLs~~~~n~~~iv~~----G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~--~~i~~~g~----v~~Lv~lL  597 (685)
                      +|.+++...+....--..    .+++.+-..+ ........-..+..|..+-......  .......-    ...+..++
T Consensus       162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~f-s~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL  240 (543)
T PF05536_consen  162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDF-SSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL  240 (543)
T ss_pred             HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHH-HhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence            999987654421111111    2344444444 2333444556677777665443211  11111111    23344477


Q ss_pred             hcCCChhHHHHHHHHHHHHhc
Q 039015          598 DSCTSRAGKEYCVSLLLALCI  618 (685)
Q Consensus       598 ~~~~s~~~~e~a~~~L~~L~~  618 (685)
                      ++..++..+..+..+...|..
T Consensus       241 ~sr~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  241 QSRLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             hcCCCHHHHHHHHHHHHHHHH
Confidence            766567777766655555544

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=97.90  E-value=0.00025  Score=78.55  Aligned_cols=275  Identities=13%  Similarity=0.076  Sum_probs=170.3

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhcCCch-----hhHHHhhCC--HHH--HHHhhcCCCHHHHHHHHHHhhccc-cCcc
Q 039015          384 ISDRLLEGTSEEKNKVAYEVRLLTKSSIFN-----RSCLVEVGC--IPS--LLKLLSSKDSSTQENAIAALLNLS-KHCK  453 (685)
Q Consensus       384 Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~-----r~~i~~~G~--ip~--Lv~lL~s~~~~~~~~A~~aL~nLs-~~~~  453 (685)
                      +.+.+++++...+..++.+|..+...+...     ...+.+.|-  +-.  .+.++..+-...-..+....+.++ .-+.
T Consensus       237 v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sk  316 (678)
T KOG1293|consen  237 VTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASK  316 (678)
T ss_pred             hhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHh
Confidence            344556777778888888888877644111     112333331  111  111122222222223333334444 2234


Q ss_pred             hhHHHHhcCcHHHHHHHhcCCC-----CHHHHHHHHHHHHHhcCch-----hHHHHhhcCCCcHHHHHHHhccCCHHHHH
Q 039015          454 SKSMVVESGGLDFIVDMVKKGL-----KVEARQHAAATLFYIASIE-----EYRKLIGENPEAIPALVDMVRDGTDRSKK  523 (685)
Q Consensus       454 ~k~~i~~~g~i~~Lv~lL~~~~-----~~e~~~~Aa~~L~~Ls~~~-----~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~  523 (685)
                      +.....+...++.++++|..+.     .++.+.-++.-..-+....     .+++.+-+ .-....+..+....+.....
T Consensus       317 lq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~-~~t~~~l~~~~~~kd~~~~a  395 (678)
T KOG1293|consen  317 LQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILE-TTTESHLMCLPPIKDHDFVA  395 (678)
T ss_pred             hhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHH-HHHHHHHccccccccHHHHH
Confidence            4556667778888888876441     2233333322222222211     23333333 22222333333344566677


Q ss_pred             HHHHHHHHhcCCC-CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-hhcHHHHHhcCChHHHHHHhhcCC
Q 039015          524 NALVAIFGLLMHS-GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK-LDGTIAILHHGALDMIMKILDSCT  601 (685)
Q Consensus       524 ~A~~aL~nLs~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~-~~~~~~i~~~g~v~~Lv~lL~~~~  601 (685)
                      .|+-.+.+++..- .-+.-+-+..++.+|+++| .+++..+...++++|.|+... ..-+..+++.|||..+..++... 
T Consensus       396 aa~l~~~s~srsV~aL~tg~~~~dv~~plvqll-~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~-  473 (678)
T KOG1293|consen  396 AALLCLKSFSRSVSALRTGLKRNDVAQPLVQLL-MDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDP-  473 (678)
T ss_pred             HHHHHHHHHHHHHHHHHcCCccchhHHHHHHHh-hCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCC-
Confidence            7777777776321 1222245667899999999 788888999999999999875 66788899999999999999887 


Q ss_pred             ChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 039015          602 SRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHE  662 (685)
Q Consensus       602 s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~  662 (685)
                      .+..+.++.++|.++..++.+.......+ .=....|..+..+.+..+++.+-.+||.|.-
T Consensus       474 ~~n~r~~~~~~Lr~l~f~~de~~k~~~~~-ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c  533 (678)
T KOG1293|consen  474 DFNSRANSLWVLRHLMFNCDEEEKFQLLA-KIPANLILDLINDPDWAVQEQCFQLLRNLTC  533 (678)
T ss_pred             CchHHHHHHHHHHHHHhcchHHHHHHHHH-HhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence            88999999999999998876554444333 2235678899999999999999999998854

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.87  E-value=0.0032  Score=66.85  Aligned_cols=272  Identities=13%  Similarity=0.084  Sum_probs=190.1

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhcCCch---hhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccCcchhHH
Q 039015          382 NFISDRLLEGTSEEKNKVAYEVRLLTKSSIFN---RSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLSKHCKSKSM  457 (685)
Q Consensus       382 ~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~---r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~k~~  457 (685)
                      .+.+..|..++.-....+.+.|..++..+...   -..-...|.+   -..+.+ .+.....-|+.+|..+...++-|-.
T Consensus       117 ~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l---~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~  193 (442)
T KOG2759|consen  117 LSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFL---KEQLQSSTNNDYIQFAARCLQTLLRVDEYRYA  193 (442)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHH---HHHHhccCCCchHHHHHHHHHHHhcCcchhhe
Confidence            45567777777777776778888877644221   1122222323   234444 6777888899999999999999999


Q ss_pred             HHhcCcHHHHHHHh-cCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCC-HHHHHHHHHHHHHhcCC
Q 039015          458 VVESGGLDFIVDMV-KKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGT-DRSKKNALVAIFGLLMH  535 (685)
Q Consensus       458 i~~~g~i~~Lv~lL-~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~A~~aL~nLs~~  535 (685)
                      ++.++++..++..+ .+..+-..+-...-.++-|++++...+.+.. .+.|+.|.+++++.. ..+..-.+.++.|+...
T Consensus       194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~-~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k  272 (442)
T KOG2759|consen  194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKR-FDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK  272 (442)
T ss_pred             eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999 4333678889999999999999998888855 899999999998765 66777889999999865


Q ss_pred             CC-------cHHHHHhcCChHHHHHHhccC--CChhHHHHHHHHHHHH-------hc---------------C-------
Q 039015          536 SG-------NHWRFLAAGAVPLLLNLLTSS--DSEELITDSLAVLATL-------AE---------------K-------  577 (685)
Q Consensus       536 ~~-------n~~~iv~~G~v~~Lv~lL~~~--~~~~~~~~al~~L~~L-------a~---------------~-------  577 (685)
                      .+       ....|+..++.+. ++.|...  +++++.+..--+-..|       ++               +       
T Consensus       273 ~~~~~~~k~~~~~mv~~~v~k~-l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~  351 (442)
T KOG2759|consen  273 GPDRETKKDIASQMVLCKVLKT-LQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEK  351 (442)
T ss_pred             CchhhHHHHHHHHHHhcCchHH-HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccc
Confidence            52       3355666655554 4544332  3445544333222222       22               1       


Q ss_pred             --hhcHHHHHhcCC--hHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHH
Q 039015          578 --LDGTIAILHHGA--LDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKA  653 (685)
Q Consensus       578 --~~~~~~i~~~g~--v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A  653 (685)
                        .++...+-+.+-  +..|+++|.....|..-..|+-=+....++-| .....+.+ -|+-+.+..|+...+++++-.|
T Consensus       352 FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP-~gk~vv~k-~ggKe~vM~Llnh~d~~Vry~A  429 (442)
T KOG2759|consen  352 FWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYP-EGKAVVEK-YGGKERVMNLLNHEDPEVRYHA  429 (442)
T ss_pred             hHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCc-hHhHHHHH-hchHHHHHHHhcCCCchHHHHH
Confidence              123333433332  57888888876457777778888888887764 34555655 8999999999999999999888


Q ss_pred             HHHHHHH
Q 039015          654 SALIRIL  660 (685)
Q Consensus       654 ~~lL~~l  660 (685)
                      -..++.|
T Consensus       430 LlavQ~l  436 (442)
T KOG2759|consen  430 LLAVQKL  436 (442)
T ss_pred             HHHHHHH
Confidence            7777655

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.87  E-value=1.1e-05  Score=57.95  Aligned_cols=40  Identities=48%  Similarity=0.566  Sum_probs=37.8

Q ss_pred             CCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccc
Q 039015          410 SIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLS  449 (685)
Q Consensus       410 ~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs  449 (685)
                      +++++..+++.|+||.|+.+|.+.+.++++.|+++|.||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            3578999999999999999999999999999999999997

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PTZ00429 beta-adaptin; Provisional

Probab=97.85  E-value=0.0047  Score=72.39  Aligned_cols=246  Identities=14%  Similarity=0.126  Sum_probs=164.3

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV  459 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~  459 (685)
                      .+..|...|.+.+...+..|++.+-.+...+.+.-      .+.+.+++++.++|.+++....-.|.+.+.....-..+ 
T Consensus        33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS------~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-  105 (746)
T PTZ00429         33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVS------YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-  105 (746)
T ss_pred             hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCch------HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-
Confidence            35667788888888888888876544433232221      24567788899999999999888888887644443333 


Q ss_pred             hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcH
Q 039015          460 ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNH  539 (685)
Q Consensus       460 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~  539 (685)
                         ++..+.+=+.+. ++..|..|+.+|.++-. ++   .+.   -.++.+.+.+.+.++-+++.|+.++..+-....  
T Consensus       106 ---aINtl~KDl~d~-Np~IRaLALRtLs~Ir~-~~---i~e---~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--  172 (746)
T PTZ00429        106 ---AVNTFLQDTTNS-SPVVRALAVRTMMCIRV-SS---VLE---YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--  172 (746)
T ss_pred             ---HHHHHHHHcCCC-CHHHHHHHHHHHHcCCc-HH---HHH---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--
Confidence               366677777777 99999999999988744 12   121   246677888888899999999999999864333  


Q ss_pred             HHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhcc
Q 039015          540 WRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCIN  619 (685)
Q Consensus       540 ~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~  619 (685)
                      ..+.+.|.++.|.++| .+.++.+...|+.+|..+.......-. ...+.+..|+..+... +++.+-..+.+|....-.
T Consensus       173 elv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~-~EW~Qi~IL~lL~~y~P~  249 (746)
T PTZ00429        173 QLFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPEC-NEWGQLYILELLAAQRPS  249 (746)
T ss_pred             ccccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcC-ChHHHHHHHHHHHhcCCC
Confidence            3345678889999998 788999999999999999764322211 2233456666666655 777777766666443222


Q ss_pred             CcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHH
Q 039015          620 GGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASA  655 (685)
Q Consensus       620 ~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~  655 (685)
                      +..+..       .++..+...+++.++.+.-.|..
T Consensus       250 ~~~e~~-------~il~~l~~~Lq~~N~AVVl~Aik  278 (746)
T PTZ00429        250 DKESAE-------TLLTRVLPRMSHQNPAVVMGAIK  278 (746)
T ss_pred             CcHHHH-------HHHHHHHHHhcCCCHHHHHHHHH
Confidence            212211       12445555566655554433333

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.84  E-value=1.5e-05  Score=79.29  Aligned_cols=66  Identities=17%  Similarity=0.344  Sum_probs=57.8

Q ss_pred             ccCcCccccCCCceec-cCcccccHHHHHHHHHcCCCCCCCCCcc-ccCCCCcccHHHHhhHHHHHHh
Q 039015          281 FTCPISLEIMKDPVTL-STGHTYDRASILKWFRAGNSTCPKTGER-LQSKELLVNLVLKRIIQDWSVD  346 (685)
Q Consensus       281 ~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~-l~~~~l~~n~~l~~~i~~~~~~  346 (685)
                      +.||+|..++++|+-+ +|||+||..||..-+-...+.||.|... +-.+.+.|+...+.-|+.+.+.
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkk  342 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKK  342 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHH
Confidence            9999999999999988 7999999999999887779999999763 4445799999999888888764

>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=6.3e-05  Score=87.45  Aligned_cols=72  Identities=31%  Similarity=0.424  Sum_probs=68.1

Q ss_pred             CCCCCccCcCccccCCCceecc-CcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcC
Q 039015          276 LTPDDFTCPISLEIMKDPVTLS-TGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNG  348 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~-cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~  348 (685)
                      ++|++|.-|+...+|.|||++| +|++.||+-|.+++-. ..+-|.||.+|+.+.+.||..++..|..|..++.
T Consensus       866 dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek~  938 (943)
T KOG2042|consen  866 DVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEKR  938 (943)
T ss_pred             cCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHhh
Confidence            6899999999999999999998 9999999999999987 7789999999999999999999999999988755

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.83  E-value=0.00083  Score=71.14  Aligned_cols=235  Identities=12%  Similarity=0.111  Sum_probs=171.9

Q ss_pred             HHHHHHHhcC-CCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC--CCHHHHHHHHHHhhccccCcchhHH
Q 039015          381 ANFISDRLLE-GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS--KDSSTQENAIAALLNLSKHCKSKSM  457 (685)
Q Consensus       381 i~~Lv~~L~s-~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s--~~~~~~~~A~~aL~nLs~~~~~k~~  457 (685)
                      ..+|...+++ .+.+...-|+++|..+.. -+++|..+..++++..++..|.+  .+-.+|-..+-++.-|+.++...+.
T Consensus       158 ~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~  236 (442)
T KOG2759|consen  158 KGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEK  236 (442)
T ss_pred             HHHHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHH
Confidence            4566666655 677888889999999997 67999999999999999998843  4678888999999999999988888


Q ss_pred             HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh-------HHHHhhcCCCcHHHHHHHhccC---CHHHHHHH--
Q 039015          458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE-------YRKLIGENPEAIPALVDMVRDG---TDRSKKNA--  525 (685)
Q Consensus       458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-------~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~A--  525 (685)
                      +...+.|+.|..+++......+-.-.++++.||....+       ....+.  .+-++.-++.|...   +++...+-  
T Consensus       237 ~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv--~~~v~k~l~~L~~rkysDEDL~~di~~  314 (442)
T KOG2759|consen  237 LKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMV--LCKVLKTLQSLEERKYSDEDLVDDIEF  314 (442)
T ss_pred             HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHH--hcCchHHHHHHHhcCCCcHHHHHHHHH
Confidence            87889999999999977456667788899999876552       223333  34566666766542   23322211  


Q ss_pred             -----HHHHHHhcCCC------------------------CcHHHHHhc--CChHHHHHHhccCCChhHHHHHHHHHHHH
Q 039015          526 -----LVAIFGLLMHS------------------------GNHWRFLAA--GAVPLLLNLLTSSDSEELITDSLAVLATL  574 (685)
Q Consensus       526 -----~~aL~nLs~~~------------------------~n~~~iv~~--G~v~~Lv~lL~~~~~~~~~~~al~~L~~L  574 (685)
                           -.-...||+.+                        +|..++-+.  .++..|+++|..+.++....-|+.=+...
T Consensus       315 L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~  394 (442)
T KOG2759|consen  315 LTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEY  394 (442)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHH
Confidence                 11122233321                        244445443  37888999997766666665555555555


Q ss_pred             hc-ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhcc
Q 039015          575 AE-KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCIN  619 (685)
Q Consensus       575 a~-~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~  619 (685)
                      .. .|+|+..+-+.||=..++++|.+. +|.++-+|+.++..|-.+
T Consensus       395 Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  395 VRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             HHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHHHHHHHHhh
Confidence            55 699999999999999999999998 999999999998776543

>PTZ00429 beta-adaptin; Provisional

Probab=97.81  E-value=0.0073  Score=70.85  Aligned_cols=147  Identities=9%  Similarity=0.044  Sum_probs=103.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV  458 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i  458 (685)
                      ..+..+.+.|.+.++-+|..|+-++..+-..++   ..+.+.|.++.|..+|.+.|+.++.+|+.+|..+......+ .-
T Consensus       140 ~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l~  215 (746)
T PTZ00429        140 YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-IE  215 (746)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-hH
Confidence            456777788888999999999999999876454   34556789999999999999999999999999997654432 22


Q ss_pred             HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC
Q 039015          459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH  535 (685)
Q Consensus       459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~  535 (685)
                      ...+.+..++..|..- +.=.+.....+|....  +......   ...+..+...|++.++.+.-.|+.+++++..+
T Consensus       216 l~~~~~~~Ll~~L~e~-~EW~Qi~IL~lL~~y~--P~~~~e~---~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~  286 (746)
T PTZ00429        216 SSNEWVNRLVYHLPEC-NEWGQLYILELLAAQR--PSDKESA---ETLLTRVLPRMSHQNPAVVMGAIKVVANLASR  286 (746)
T ss_pred             HHHHHHHHHHHHhhcC-ChHHHHHHHHHHHhcC--CCCcHHH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence            2455566677776654 4445555555554321  1111111   23577777778888888888888888888754

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.78  E-value=0.0073  Score=65.37  Aligned_cols=273  Identities=20%  Similarity=0.206  Sum_probs=190.3

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC--CCHHHHHHHHHHhhccccCcchhHHHH
Q 039015          382 NFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS--KDSSTQENAIAALLNLSKHCKSKSMVV  459 (685)
Q Consensus       382 ~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s--~~~~~~~~A~~aL~nLs~~~~~k~~i~  459 (685)
                      +.+...+-+.+.+++..+.+.+|.+.. +...-..+.+.+.--.++.-|..  .+..-++.|++.+..+.....+... +
T Consensus        28 ~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~-~  105 (371)
T PF14664_consen   28 ERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE-I  105 (371)
T ss_pred             HHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-C
Confidence            333334445558899999999999886 66777778887766666666655  3456778999988777655444322 3


Q ss_pred             hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcH
Q 039015          460 ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNH  539 (685)
Q Consensus       460 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~  539 (685)
                      ..|.+..|+.+.... ++..+..|..+|..|+..+.  ..+.. .|++..|++.+.+|+.+.....+.++..+..++..|
T Consensus       106 ~~~vvralvaiae~~-~D~lr~~cletL~El~l~~P--~lv~~-~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR  181 (371)
T PF14664_consen  106 PRGVVRALVAIAEHE-DDRLRRICLETLCELALLNP--ELVAE-CGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTR  181 (371)
T ss_pred             CHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhCH--HHHHH-cCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchh
Confidence            678899999999987 88999999999999987543  33444 889999999998888777778888999998888888


Q ss_pred             HHHHhcCChHHHHHHhccC------CCh--hHHHHHHHHHHHHhcChhcHHHHHhcC--ChHHHHHHhhcCCChhHHHHH
Q 039015          540 WRFLAAGAVPLLLNLLTSS------DSE--ELITDSLAVLATLAEKLDGTIAILHHG--ALDMIMKILDSCTSRAGKEYC  609 (685)
Q Consensus       540 ~~iv~~G~v~~Lv~lL~~~------~~~--~~~~~al~~L~~La~~~~~~~~i~~~g--~v~~Lv~lL~~~~s~~~~e~a  609 (685)
                      ..+...--++.++.-+...      ++.  +....+..++..+-.+-.|--.+...+  ++..|+..|+.+ ++.+++.-
T Consensus       182 ~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p-~~~ir~~I  260 (371)
T PF14664_consen  182 KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLP-NPEIRKAI  260 (371)
T ss_pred             hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCC-CHHHHHHH
Confidence            7665543455555554211      112  344555666666666666666555444  578888888776 77777766


Q ss_pred             HHHHHHHhccC-----------------c----------------------------------HHHHHHHHhcCCcHHHH
Q 039015          610 VSLLLALCING-----------------G----------------------------------ANVVALLVKSPSLMGSL  638 (685)
Q Consensus       610 ~~~L~~L~~~~-----------------~----------------------------------~~~~~~l~~~~g~i~~L  638 (685)
                      +.++..+-.-.                 +                                  .-...++.+ .|+++.|
T Consensus       261 ldll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~-~gL~~~L  339 (371)
T PF14664_consen  261 LDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIE-AGLLEAL  339 (371)
T ss_pred             HHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHH-cChHHHH
Confidence            66666552200                 0                                  002334455 8999999


Q ss_pred             HHHHhcC-ChHHHHHHHHHHHHHHH
Q 039015          639 YSLLSQG-SSRASKKASALIRILHE  662 (685)
Q Consensus       639 ~~Ll~~g-~~~~k~~A~~lL~~l~~  662 (685)
                      ++++.+. ++...+||.-||.-+-.
T Consensus       340 ~~li~~~~d~~l~~KAtlLL~elL~  364 (371)
T PF14664_consen  340 VELIESSEDSSLSRKATLLLGELLH  364 (371)
T ss_pred             HHHHhcCCCchHHHHHHHHHHHHHH
Confidence            9999998 77888999988876543

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.77  E-value=0.0026  Score=70.79  Aligned_cols=264  Identities=16%  Similarity=0.210  Sum_probs=179.2

Q ss_pred             HHHHHHHHhhcCCchhhHHHhhCCHHHHHHhh----------cCCCHHHHHHHHHHhhccccCc-chhHHHHhcCcHHHH
Q 039015          399 VAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLL----------SSKDSSTQENAIAALLNLSKHC-KSKSMVVESGGLDFI  467 (685)
Q Consensus       399 a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL----------~s~~~~~~~~A~~aL~nLs~~~-~~k~~i~~~g~i~~L  467 (685)
                      |+.+|+.+++ ++.+-..+....++..|.++-          ...+..+...|+++|+|+-.+. ..|..+++.|+.+.+
T Consensus         1 ~L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l   79 (446)
T PF10165_consen    1 CLETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL   79 (446)
T ss_pred             CHHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence            3567888886 677777777777777777754          2367899999999999998766 558888899999999


Q ss_pred             HHHhcCC----CCHHHHHHHHHHHHHhcC-chhHHHHhhcCCCcHHHHHHHhccC-----------------CHHHHHHH
Q 039015          468 VDMVKKG----LKVEARQHAAATLFYIAS-IEEYRKLIGENPEAIPALVDMVRDG-----------------TDRSKKNA  525 (685)
Q Consensus       468 v~lL~~~----~~~e~~~~Aa~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~~-----------------~~~~~~~A  525 (685)
                      +..|+..    .+.+..-....+||-++. ..+.+..+..+.+++..|+..|...                 +......+
T Consensus        80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei  159 (446)
T PF10165_consen   80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI  159 (446)
T ss_pred             HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence            9999876    267888899999998876 4477777777678888888866410                 12345578


Q ss_pred             HHHHHHhcCCCCcHHHHHhcCChHHHHHHhcc--------CCChhHHHHHHHHHHHHhcC-hhc-------HHHHH----
Q 039015          526 LVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTS--------SDSEELITDSLAVLATLAEK-LDG-------TIAIL----  585 (685)
Q Consensus       526 ~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~--------~~~~~~~~~al~~L~~La~~-~~~-------~~~i~----  585 (685)
                      ++++||+..+......--..+.++.|+.+|..        .+.......++.+|.|+--. ...       ...+.    
T Consensus       160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~  239 (446)
T PF10165_consen  160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD  239 (446)
T ss_pred             HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence            89999998765544332334556666665431        12356667788888887321 111       11111    


Q ss_pred             hcCChHHHHHHhhcC----CC---hhHHHHHHHHHHHHhccCcHHHHHHHH---------------hcCCcHHHHHHHHh
Q 039015          586 HHGALDMIMKILDSC----TS---RAGKEYCVSLLLALCINGGANVVALLV---------------KSPSLMGSLYSLLS  643 (685)
Q Consensus       586 ~~g~v~~Lv~lL~~~----~s---~~~~e~a~~~L~~L~~~~~~~~~~~l~---------------~~~g~i~~L~~Ll~  643 (685)
                      ....+..|+.+|...    ..   ...-..-+.+|..++..+ ..+++.+.               ++..+-..|+.|+.
T Consensus       240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~-~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt  318 (446)
T PF10165_consen  240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA-REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT  318 (446)
T ss_pred             ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc-HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC
Confidence            111256677766531    11   123334566666777654 33444443               35668899999999


Q ss_pred             cCChHHHHHHHHHHHHHHHhh
Q 039015          644 QGSSRASKKASALIRILHEFY  664 (685)
Q Consensus       644 ~g~~~~k~~A~~lL~~l~~~~  664 (685)
                      +..+..|..++.+|..|.+-.
T Consensus       319 ~~~~~~k~~vaellf~Lc~~d  339 (446)
T PF10165_consen  319 SPDPQLKDAVAELLFVLCKED  339 (446)
T ss_pred             CCCchHHHHHHHHHHHHHhhh
Confidence            999999999999999997643

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=2.8e-05  Score=83.46  Aligned_cols=70  Identities=19%  Similarity=0.371  Sum_probs=58.1

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCC-----CCcccHHHHhhHHHHHHh
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSK-----ELLVNLVLKRIIQDWSVD  346 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~-----~l~~n~~l~~~i~~~~~~  346 (685)
                      .+..+|.|.||...+.+||+++|||+||..||.+-+.. ...||.|+..+...     ...+|..+..+|..|+..
T Consensus        80 ~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~  154 (398)
T KOG4159|consen   80 EIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG  154 (398)
T ss_pred             cccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence            56889999999999999999999999999999997774 78999999988642     233466777788777655

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.65  E-value=0.0011  Score=73.49  Aligned_cols=271  Identities=15%  Similarity=0.135  Sum_probs=176.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhh--HHHh--hCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchh
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRS--CLVE--VGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSK  455 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~--~i~~--~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k  455 (685)
                      .++.|.+.|.+.+...+..|..+|..+++.+++--.  +.-+  .-.||.++.+.+++++.++..|+..+...-.... .
T Consensus       129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~-q  207 (885)
T KOG2023|consen  129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT-Q  207 (885)
T ss_pred             HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc-H
Confidence            588999999999888899999999999985533211  1111  1358999999999999999999998865544332 2


Q ss_pred             HHHH-hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015          456 SMVV-ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM  534 (685)
Q Consensus       456 ~~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  534 (685)
                      ..+. -...++.+..+-... ++++|.+.+.+|..|.....-|-.=.- .++|+.++...++.+..+--.|+.....++.
T Consensus       208 al~~~iD~Fle~lFalanD~-~~eVRk~vC~alv~Llevr~dkl~phl-~~IveyML~~tqd~dE~VALEACEFwla~ae  285 (885)
T KOG2023|consen  208 ALYVHIDKFLEILFALANDE-DPEVRKNVCRALVFLLEVRPDKLVPHL-DNIVEYMLQRTQDVDENVALEACEFWLALAE  285 (885)
T ss_pred             HHHHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHhcHHhcccch-HHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence            3333 244566666666555 999999999999988765543322222 4688888888888888888889999988988


Q ss_pred             CCCcHHHHHh--cCChHHHHHHhc-cCCC---------------------------------------------------
Q 039015          535 HSGNHWRFLA--AGAVPLLLNLLT-SSDS---------------------------------------------------  560 (685)
Q Consensus       535 ~~~n~~~iv~--~G~v~~Lv~lL~-~~~~---------------------------------------------------  560 (685)
                      .+--+..+..  ...||.|++=+. ++.+                                                   
T Consensus       286 qpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~  365 (885)
T KOG2023|consen  286 QPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDA  365 (885)
T ss_pred             CcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccc
Confidence            7743333322  346666655332 0000                                                   


Q ss_pred             ---hhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHH----HhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCC
Q 039015          561 ---EELITDSLAVLATLAEKLDGTIAILHHGALDMIMK----ILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPS  633 (685)
Q Consensus       561 ---~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~----lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g  633 (685)
                         =.++.-++++|..|+.       +.....++.++-    .|.+. .=.++|.++-+|..++.++.+.....+   +.
T Consensus       366 ~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~L---pe  434 (885)
T KOG2023|consen  366 FSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLSSE-EWKVREAGVLALGAIAEGCMQGFVPHL---PE  434 (885)
T ss_pred             cccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcCcc-hhhhhhhhHHHHHHHHHHHhhhcccch---HH
Confidence               0122223333333333       112222344444    44333 445788899999999987644443333   23


Q ss_pred             cHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 039015          634 LMGSLYSLLSQGSSRASKKASALIRILHEFY  664 (685)
Q Consensus       634 ~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~  664 (685)
                      ++|.|+.++.+..+-+|.-.-|.|...+.|-
T Consensus       435 Lip~l~~~L~DKkplVRsITCWTLsRys~wv  465 (885)
T KOG2023|consen  435 LIPFLLSLLDDKKPLVRSITCWTLSRYSKWV  465 (885)
T ss_pred             HHHHHHHHhccCccceeeeeeeeHhhhhhhH
Confidence            6899999999988877777777776666653

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=0.001  Score=72.47  Aligned_cols=234  Identities=16%  Similarity=0.148  Sum_probs=164.1

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHh-hCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHH
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVE-VGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSM  457 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~-~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~  457 (685)
                      ...+-|..+|+.++++++.-+--.|..+-.+- .+.....+ ...++.++.-+.++++.+|..|+.-+.....-....-.
T Consensus       208 ~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI-~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l  286 (675)
T KOG0212|consen  208 SLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEI-RSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLL  286 (675)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH-hcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchh
Confidence            34677788898888888865544444443211 11111212 35788999999999999999999888777655555555


Q ss_pred             HHhcCcHHHHHHHhcCCCCHHHHHHHHH---HHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015          458 VVESGGLDFIVDMVKKGLKVEARQHAAA---TLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM  534 (685)
Q Consensus       458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~---~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  534 (685)
                      ..-.|++..++..+........++.|..   .|..+......+..|.- ...|..|.+.+.+...+++..++.-+..|-.
T Consensus       287 ~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~-~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~  365 (675)
T KOG0212|consen  287 LYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDY-GSIIEVLTKYLSDDREETRIAVLNWIILLYH  365 (675)
T ss_pred             hhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccch-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHh
Confidence            5578889999998887633334444333   24445444444444432 4578899999999899999999999988877


Q ss_pred             CCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHH
Q 039015          535 HSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLL  614 (685)
Q Consensus       535 ~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~  614 (685)
                      ..++....-...+.+.|++-| ++.++.+...++.+++++|.++....-   -..+..|+++.+.. ..-....+.-++.
T Consensus       366 ~~p~ql~~h~~~if~tLL~tL-sd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~-~~~l~~Rg~lIIR  440 (675)
T KOG0212|consen  366 KAPGQLLVHNDSIFLTLLKTL-SDRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKED-TKLLEVRGNLIIR  440 (675)
T ss_pred             hCcchhhhhccHHHHHHHHhh-cCchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhh-hHHHHhhhhHHHH
Confidence            777777666778899999999 888899999999999999998776521   11244556655553 4455667777888


Q ss_pred             HHhcc
Q 039015          615 ALCIN  619 (685)
Q Consensus       615 ~L~~~  619 (685)
                      .||..
T Consensus       441 qlC~l  445 (675)
T KOG0212|consen  441 QLCLL  445 (675)
T ss_pred             HHHHH
Confidence            88864

>TIGR02270 conserved hypothetical protein

Probab=97.63  E-value=0.0043  Score=67.92  Aligned_cols=220  Identities=13%  Similarity=0.029  Sum_probs=122.5

Q ss_pred             HHHHHHHHhc-CCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015          380 LANFISDRLL-EGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV  458 (685)
Q Consensus       380 ~i~~Lv~~L~-s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i  458 (685)
                      .++.|+..|. ..+.++...++..+.  ...++         .++..|+..|.+.+..++..++.+|..+          
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i----------  113 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALL--AQEDA---------LDLRSVLAVLQAGPEGLCAGIQAALGWL----------  113 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHh--ccCCh---------HHHHHHHHHhcCCCHHHHHHHHHHHhcC----------
Confidence            4666677773 344555444333322  11111         1266777777777777777777777643          


Q ss_pred             HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 039015          459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGN  538 (685)
Q Consensus       459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n  538 (685)
                      ...++.+.|+..|++. ++.++..++.++..          .+  ....+.|..+|++.++.++..|+.+|..|      
T Consensus       114 ~~~~a~~~L~~~L~~~-~p~vR~aal~al~~----------r~--~~~~~~L~~~L~d~d~~Vra~A~raLG~l------  174 (410)
T TIGR02270       114 GGRQAEPWLEPLLAAS-EPPGRAIGLAALGA----------HR--HDPGPALEAALTHEDALVRAAALRALGEL------  174 (410)
T ss_pred             CchHHHHHHHHHhcCC-ChHHHHHHHHHHHh----------hc--cChHHHHHHHhcCCCHHHHHHHHHHHHhh------
Confidence            2455666777777666 66666665555444          11  23456777777777777777777777665      


Q ss_pred             HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHh----cC------------------ChHHHHHH
Q 039015          539 HWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILH----HG------------------ALDMIMKI  596 (685)
Q Consensus       539 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~----~g------------------~v~~Lv~l  596 (685)
                          -...+++.|...+ .+.++.++..|+..|..+-. +.....+..    .|                  .++.|..+
T Consensus       175 ----~~~~a~~~L~~al-~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~l  248 (410)
T TIGR02270       175 ----PRRLSESTLRLYL-RDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLREL  248 (410)
T ss_pred             ----ccccchHHHHHHH-cCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHH
Confidence                2344555566666 56667777777776655533 222222111    11                  12223333


Q ss_pred             hhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015          597 LDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF  663 (685)
Q Consensus       597 L~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~  663 (685)
                      ++..   .++..++.+|..+-             .+.+++.|...+.+..  .++.|...++.+..-
T Consensus       249 l~d~---~vr~~a~~AlG~lg-------------~p~av~~L~~~l~d~~--~aR~A~eA~~~ItG~  297 (410)
T TIGR02270       249 LQAA---ATRREALRAVGLVG-------------DVEAAPWCLEAMREPP--WARLAGEAFSLITGM  297 (410)
T ss_pred             hcCh---hhHHHHHHHHHHcC-------------CcchHHHHHHHhcCcH--HHHHHHHHHHHhhCC
Confidence            3321   23333333333221             2346778888776544  888898888888773

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=97.57  E-value=0.00086  Score=71.34  Aligned_cols=175  Identities=19%  Similarity=0.191  Sum_probs=141.8

Q ss_pred             hhhHHHhhCCHHHHHHhhcCCCHHH--HHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 039015          413 NRSCLVEVGCIPSLLKLLSSKDSST--QENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYI  490 (685)
Q Consensus       413 ~r~~i~~~G~ip~Lv~lL~s~~~~~--~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~L  490 (685)
                      -...|..-|++..|++++.+++.+.  +..|...|-.+. ..+|++.++.-| +..|+.+-+....++.....+.+|.+|
T Consensus       172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m  249 (832)
T KOG3678|consen  172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM  249 (832)
T ss_pred             hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence            3456777899999999999987655  667777765543 357889998777 667777666555789999999999999


Q ss_pred             cCch-hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC--cHHHHHhcCChHHHHHHhccCCChhHHHHH
Q 039015          491 ASIE-EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG--NHWRFLAAGAVPLLLNLLTSSDSEELITDS  567 (685)
Q Consensus       491 s~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~a  567 (685)
                      -.+. +.+..+.. .|++..++-..+..++.....++-||.|.+.+..  .+.+|++..+.+-|.-+- .+.++-++-.|
T Consensus       250 FKHSeet~~~Lva-a~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~A  327 (832)
T KOG3678|consen  250 FKHSEETCQRLVA-AGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHA  327 (832)
T ss_pred             hhhhHHHHHHHHh-hcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHH
Confidence            8765 67777877 8999999999888889999999999999997764  788999999999999887 45577778888


Q ss_pred             HHHHHHHhcChhcHHHHHhcCChH
Q 039015          568 LAVLATLAEKLDGTIAILHHGALD  591 (685)
Q Consensus       568 l~~L~~La~~~~~~~~i~~~g~v~  591 (685)
                      +-+.+.|+.+.+.-..+..+|.+.
T Consensus       328 ClAV~vlat~KE~E~~VrkS~Tla  351 (832)
T KOG3678|consen  328 CLAVAVLATNKEVEREVRKSGTLA  351 (832)
T ss_pred             HHHHhhhhhhhhhhHHHhhccchh
Confidence            888899999888888887777543

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.55  E-value=4.8e-05  Score=82.76  Aligned_cols=67  Identities=24%  Similarity=0.523  Sum_probs=56.2

Q ss_pred             CCCCCccCcCccccCCCceec-cCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcc-cHHHHhhHHHH
Q 039015          276 LTPDDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRAGNSTCPKTGERLQSKELLV-NLVLKRIIQDW  343 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~-n~~l~~~i~~~  343 (685)
                      ++.+++.||+|..++.||+.. .|||.||+.|+..|... +..||.|+..+......+ ...++..+..|
T Consensus        17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l   85 (391)
T KOG0297|consen   17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL   85 (391)
T ss_pred             CCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence            477889999999999999995 99999999999999998 899999988887665555 34556666555

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.49  E-value=0.00018  Score=51.61  Aligned_cols=40  Identities=25%  Similarity=0.316  Sum_probs=37.3

Q ss_pred             chhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 039015          493 IEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLL  533 (685)
Q Consensus       493 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs  533 (685)
                      +++++..+.+ .|+||.|+.+|+++++.+++.|++||.||+
T Consensus         1 ~~~~~~~i~~-~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVE-AGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHH-TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHH-cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            3678899998 999999999999999999999999999997

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=97.46  E-value=0.00013  Score=60.33  Aligned_cols=49  Identities=27%  Similarity=0.518  Sum_probs=38.2

Q ss_pred             CCCccCcCccccCCC-ceec-cCcccccHHHHHHHHHc--CCCCCCCCCcccc
Q 039015          278 PDDFTCPISLEIMKD-PVTL-STGHTYDRASILKWFRA--GNSTCPKTGERLQ  326 (685)
Q Consensus       278 ~~~~~CpIc~~~m~d-Pv~~-~cghtfcr~ci~~~~~~--~~~~CP~c~~~l~  326 (685)
                      +-+-.||.|...-.| |++. .|+|.|...||.+|+..  ...+||+||+...
T Consensus        30 ~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   30 PFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             ccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            444567777776666 5555 79999999999999985  3679999998764

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=6.7e-05  Score=78.45  Aligned_cols=47  Identities=23%  Similarity=0.456  Sum_probs=40.5

Q ss_pred             ccCcCccccCCCc---eeccCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015          281 FTCPISLEIMKDP---VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQS  327 (685)
Q Consensus       281 ~~CpIc~~~m~dP---v~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~  327 (685)
                      +.|.||++-+.+-   .++||+|.|...||..|+......||.|++....
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence            6999999999865   3579999999999999999855669999997654

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.45  E-value=0.0094  Score=67.59  Aligned_cols=239  Identities=15%  Similarity=0.150  Sum_probs=173.9

Q ss_pred             HHHHHHHhcC--CCHHHHHHHHHHHHHHhhcCC------chh------hHHH-----hhCCHHHHHHhhcCCCHHHHHHH
Q 039015          381 ANFISDRLLE--GTSEEKNKVAYEVRLLTKSSI------FNR------SCLV-----EVGCIPSLLKLLSSKDSSTQENA  441 (685)
Q Consensus       381 i~~Lv~~L~s--~~~~~~~~a~~~L~~La~~~~------~~r------~~i~-----~~G~ip~Lv~lL~s~~~~~~~~A  441 (685)
                      .+.|++-|..  .|++...-++..+..+..+++      ..+      .||.     ..+.|..|+..+...|-.++..|
T Consensus        63 mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~a  142 (970)
T KOG0946|consen   63 MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYA  142 (970)
T ss_pred             cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHH
Confidence            4666677754  478888888999888876552      222      2333     34899999999999999999999


Q ss_pred             HHHhhccccCc--chhHHHH-hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhcc-C
Q 039015          442 IAALLNLSKHC--KSKSMVV-ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRD-G  517 (685)
Q Consensus       442 ~~aL~nLs~~~--~~k~~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~-~  517 (685)
                      +..|.+|-.+.  +-+..+. .+-+|..++.+|... ...+|-.|+-.|..|..+...-..+..-..++..|+.++.. |
T Consensus       143 IqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds-rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEG  221 (970)
T KOG0946|consen  143 IQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS-REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEG  221 (970)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh-hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcC
Confidence            99998886554  3355555 689999999999987 67778888888899998886666665546799999999975 3


Q ss_pred             CH---HHHHHHHHHHHHhcCCC-CcHHHHHhcCChHHHHHHhccC--CCh----------hHHHHHHHHHHHHhcC----
Q 039015          518 TD---RSKKNALVAIFGLLMHS-GNHWRFLAAGAVPLLLNLLTSS--DSE----------ELITDSLAVLATLAEK----  577 (685)
Q Consensus       518 ~~---~~~~~A~~aL~nLs~~~-~n~~~iv~~G~v~~Lv~lL~~~--~~~----------~~~~~al~~L~~La~~----  577 (685)
                      ..   -+..+++..|.||..+. .|...+.+.+.||.|.++|...  .+.          .-...++.++..|..-    
T Consensus       222 g~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~  301 (970)
T KOG0946|consen  222 GLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTS  301 (970)
T ss_pred             CCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcH
Confidence            22   35789999999999755 5999999999999999998421  111          1123356666666541    


Q ss_pred             ---hhcHHHHHhcCChHHHHH-HhhcCCChhHHHHHHHHHHHHhccC
Q 039015          578 ---LDGTIAILHHGALDMIMK-ILDSCTSRAGKEYCVSLLLALCING  620 (685)
Q Consensus       578 ---~~~~~~i~~~g~v~~Lv~-lL~~~~s~~~~e~a~~~L~~L~~~~  620 (685)
                         ..++.++...+.+..|.. ++..|-...+...++-++.++.+++
T Consensus       302 ~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn  348 (970)
T KOG0946|consen  302 SITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGN  348 (970)
T ss_pred             HHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhc
Confidence               123345667777888888 5555445567777888888887765

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.43  E-value=0.0075  Score=61.87  Aligned_cols=259  Identities=15%  Similarity=0.093  Sum_probs=168.5

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHhhcCCchh----hHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhc
Q 039015          386 DRLLEGTSEEKNKVAYEVRLLTKSSIFNR----SCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVES  461 (685)
Q Consensus       386 ~~L~s~~~~~~~~a~~~L~~La~~~~~~r----~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~  461 (685)
                      ..|...+..++.-+++.+.-+..+.+.|-    ..++++|..|.++..+..+|.++...|+..+..++..++.-..|.+.
T Consensus        89 rGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeS  168 (524)
T KOG4413|consen   89 RGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFES  168 (524)
T ss_pred             hcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhccc
Confidence            33444455556666666666655444232    23457899999999999999999999999999999999998888877


Q ss_pred             CcHHHHHHH--hcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhcc-CCHHHHHHHHHHHHHhcCCCC
Q 039015          462 GGLDFIVDM--VKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRD-GTDRSKKNALVAIFGLLMHSG  537 (685)
Q Consensus       462 g~i~~Lv~l--L~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~  537 (685)
                      .....+-..  --+. +.-+|......+..+++.. +.....-. .|.+..|..=|+. .+.-+..+++...+.|...+.
T Consensus       169 ellDdlhlrnlaakc-ndiaRvRVleLIieifSiSpesaneckk-SGLldlLeaElkGteDtLVianciElvteLaeteH  246 (524)
T KOG4413|consen  169 ELLDDLHLRNLAAKC-NDIARVRVLELIIEIFSISPESANECKK-SGLLDLLEAELKGTEDTLVIANCIELVTELAETEH  246 (524)
T ss_pred             ccCChHHHhHHHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhh-hhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh
Confidence            665554322  2223 4566777777777775544 44444444 7888887777665 455677788899999988888


Q ss_pred             cHHHHHhcCChHHHHHHhcc-CCChhHHHHHHHHHHHHhcC----hhcHHHHHhcC--ChHHHHHHhhcCCChhHHHHHH
Q 039015          538 NHWRFLAAGAVPLLLNLLTS-SDSEELITDSLAVLATLAEK----LDGTIAILHHG--ALDMIMKILDSCTSRAGKEYCV  610 (685)
Q Consensus       538 n~~~iv~~G~v~~Lv~lL~~-~~~~~~~~~al~~L~~La~~----~~~~~~i~~~g--~v~~Lv~lL~~~~s~~~~e~a~  610 (685)
                      .+..+.+.|.|+.+-+++.. +.++--.-.++.....+-+.    ...-+++++.-  +|....+++... ++...+.|+
T Consensus       247 greflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmn-DpdaieaAi  325 (524)
T KOG4413|consen  247 GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMN-DPDAIEAAI  325 (524)
T ss_pred             hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcC-CchHHHHHH
Confidence            88999999999999999832 22333333355554444332    22233444332  244555566665 899999999


Q ss_pred             HHHHHHhccCcHHHHHHHHhcCC--cHHHHHHHHhcCChHHH
Q 039015          611 SLLLALCINGGANVVALLVKSPS--LMGSLYSLLSQGSSRAS  650 (685)
Q Consensus       611 ~~L~~L~~~~~~~~~~~l~~~~g--~i~~L~~Ll~~g~~~~k  650 (685)
                      -+|..+..+.  +..+.+.+ .|  ....++.-..+.+..++
T Consensus       326 DalGilGSnt--eGadlllk-Tgppaaehllarafdqnahak  364 (524)
T KOG4413|consen  326 DALGILGSNT--EGADLLLK-TGPPAAEHLLARAFDQNAHAK  364 (524)
T ss_pred             HHHHhccCCc--chhHHHhc-cCChHHHHHHHHHhcccccch
Confidence            9999998773  44455555 33  34444433333344443

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=6.9e-05  Score=75.38  Aligned_cols=48  Identities=21%  Similarity=0.252  Sum_probs=44.6

Q ss_pred             ccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCC
Q 039015          281 FTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSK  328 (685)
Q Consensus       281 ~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~  328 (685)
                      -.|+||+..+.-||.++|+|.||.-||+--+..+..+||+|+.+++++
T Consensus         8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~   55 (324)
T KOG0824|consen    8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST   55 (324)
T ss_pred             CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence            469999999999999999999999999998888888999999999864

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.37  E-value=0.024  Score=60.56  Aligned_cols=239  Identities=21%  Similarity=0.222  Sum_probs=171.9

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCC-----chh----hHHHhhCCHHHHHHhhcC------CCHHHHHHHHH
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSI-----FNR----SCLVEVGCIPSLLKLLSS------KDSSTQENAIA  443 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~-----~~r----~~i~~~G~ip~Lv~lL~s------~~~~~~~~A~~  443 (685)
                      ..++.|+..|...+.++-...+..|+.|...+.     +..    ..+++.++++.|++-+..      ....-..+++.
T Consensus       125 n~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~  204 (536)
T KOG2734|consen  125 NAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLA  204 (536)
T ss_pred             ccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHH
Confidence            358899999999999999999999999986552     222    245667899999986654      23445667788


Q ss_pred             HhhccccCc-chhHHHHhcCcHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhc----c
Q 039015          444 ALLNLSKHC-KSKSMVVESGGLDFIVDMVK-KGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVR----D  516 (685)
Q Consensus       444 aL~nLs~~~-~~k~~i~~~g~i~~Lv~lL~-~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~----~  516 (685)
                      ++-|+.... +-...+++.|.+.-|+.-+. .+.-..-+..|..+|.-+-.+. +++...+. -.+|..|++-+.    +
T Consensus       205 vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~-l~GiD~lL~~la~yk~~  283 (536)
T KOG2734|consen  205 VVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGP-LDGIDVLLRQLAVYKRH  283 (536)
T ss_pred             HHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcC-cccHHHHHhhcchhhcc
Confidence            888887655 44778888887777776443 4323455778888888776655 58888888 788998888663    2


Q ss_pred             C----C-HHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHH---HHHhcC
Q 039015          517 G----T-DRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTI---AILHHG  588 (685)
Q Consensus       517 ~----~-~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~---~i~~~g  588 (685)
                      +    + .+..++--.+|+.+...++|+.+++...+++...-+++  .....+-.++.+|..+..++++..   .+++..
T Consensus       284 dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr--~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~l  361 (536)
T KOG2734|consen  284 DPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLR--EKKVSRGSALKVLDHAMFGPEGTPNCNKFVEIL  361 (536)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHH--HHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            2    1 24556777788888889999999999988887666663  245566779999999888776554   468888


Q ss_pred             ChHHHHH-HhhcC--------CChhHHHHHHHHHHHHhccC
Q 039015          589 ALDMIMK-ILDSC--------TSRAGKEYCVSLLLALCING  620 (685)
Q Consensus       589 ~v~~Lv~-lL~~~--------~s~~~~e~a~~~L~~L~~~~  620 (685)
                      |+..+.. +|+.+        +.....++-+++|+.+-.+.
T Consensus       362 GLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~  402 (536)
T KOG2734|consen  362 GLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL  402 (536)
T ss_pred             hHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence            8888877 56432        13445567888888876643

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.36  E-value=0.001  Score=56.09  Aligned_cols=87  Identities=18%  Similarity=0.247  Sum_probs=70.6

Q ss_pred             HHHHHHHh-cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH
Q 039015          381 ANFISDRL-LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV  459 (685)
Q Consensus       381 i~~Lv~~L-~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~  459 (685)
                      |+.|++.| ++.++.+|..|++.|..+-           ...++|.|+.++.++++.++..|+.+|..+.          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            57889988 8889999999988887332           1245999999999999999999999999883          


Q ss_pred             hcCcHHHHHHHhcCCCCHHHHHHHHHHHH
Q 039015          460 ESGGLDFIVDMVKKGLKVEARQHAAATLF  488 (685)
Q Consensus       460 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~  488 (685)
                      ...+++.|.+++.++.+..+|..|+.+|.
T Consensus        60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            45689999999988746667888888763

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.36  E-value=0.002  Score=64.96  Aligned_cols=182  Identities=19%  Similarity=0.120  Sum_probs=119.7

Q ss_pred             hcCCCHHHHHHHHHHHHHHhhcC--CchhhHHHhh--CCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCc
Q 039015          388 LLEGTSEEKNKVAYEVRLLTKSS--IFNRSCLVEV--GCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGG  463 (685)
Q Consensus       388 L~s~~~~~~~~a~~~L~~La~~~--~~~r~~i~~~--G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~  463 (685)
                      -.+.+.+.|..|+..|+.+..++  ......+.+.  ..++.+...+.+.+..+...|+.++..|+..-...-.-.-...
T Consensus        16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~   95 (228)
T PF12348_consen   16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADIL   95 (228)
T ss_dssp             HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence            36688999999999999999877  3444444433  6677888888888888999999999999876554432234567


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCc-HHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-cHHH
Q 039015          464 LDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEA-IPALVDMVRDGTDRSKKNALVAIFGLLMHSG-NHWR  541 (685)
Q Consensus       464 i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~-i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-n~~~  541 (685)
                      ++.|+..+..+ +..++..|..+|..+...-.+..      .+ ++.+...+.+.++..+..++..|..+....+ +...
T Consensus        96 l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~------~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   96 LPPLLKKLGDS-KKFIREAANNALDAIIESCSYSP------KILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence            89999999988 88899999999999876544221      22 5667777888899999999999988875444 2222


Q ss_pred             HHh----cCChHHHHHHhccCCChhHHHHHHHHHHHHhcC
Q 039015          542 FLA----AGAVPLLLNLLTSSDSEELITDSLAVLATLAEK  577 (685)
Q Consensus       542 iv~----~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~  577 (685)
                      +-.    ..+++.+...+ .|.++++++.|-.++..+...
T Consensus       169 l~~~~~~~~l~~~l~~~l-~D~~~~VR~~Ar~~~~~l~~~  207 (228)
T PF12348_consen  169 LQKSAFLKQLVKALVKLL-SDADPEVREAARECLWALYSH  207 (228)
T ss_dssp             G--HHHHHHHHHHHHHHH-TSS-HHHHHHHHHHHHHHHHH
T ss_pred             hcccchHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHH
Confidence            211    33677778888 789999999999999999664

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=0.00017  Score=71.58  Aligned_cols=51  Identities=27%  Similarity=0.369  Sum_probs=43.8

Q ss_pred             CCCCCccCcCccccCCCceec-cCcccccHHHHHHHHHc-CCCCCCCCCcccc
Q 039015          276 LTPDDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRA-GNSTCPKTGERLQ  326 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~-~~~~CP~c~~~l~  326 (685)
                      .-..+-.||+|++.-..|.+. +|||.||..||..-+.. ..++||.|+....
T Consensus       235 ~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  235 TGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             cccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            556788999999999999988 59999999999987763 4689999998764

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.33  E-value=0.01  Score=66.14  Aligned_cols=232  Identities=19%  Similarity=0.205  Sum_probs=156.7

Q ss_pred             CCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCC-----CHHHHHHHHHHhhccccC-cchhHHHH-hcC
Q 039015          390 EGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSK-----DSSTQENAIAALLNLSKH-CKSKSMVV-ESG  462 (685)
Q Consensus       390 s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~-----~~~~~~~A~~aL~nLs~~-~~~k~~i~-~~g  462 (685)
                      ..+.++..+|+++|.|+...++..|..+.+.|+.+.++..|+..     +.++.--..++|.-++.. .+.+..++ +.+
T Consensus        43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~  122 (446)
T PF10165_consen   43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH  122 (446)
T ss_pred             CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence            45778899999999999999999999999999999999999875     678888888888777644 45565555 568


Q ss_pred             cHHHHHHHhcCC----------------CCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccC---------
Q 039015          463 GLDFIVDMVKKG----------------LKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDG---------  517 (685)
Q Consensus       463 ~i~~Lv~lL~~~----------------~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~---------  517 (685)
                      ++..|+..|...                ...+....+..++||+......... ....+.++.|+.++..-         
T Consensus       123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~  201 (446)
T PF10165_consen  123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPP  201 (446)
T ss_pred             hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCc
Confidence            888888876310                1345567788899999765432222 11134555555554311         


Q ss_pred             CHHHHHHHHHHHHHhcCCCC-c-------HH----HHHhcCChHHHHHHhcc----CC---ChhHHHHHHHHHHHHhcC-
Q 039015          518 TDRSKKNALVAIFGLLMHSG-N-------HW----RFLAAGAVPLLLNLLTS----SD---SEELITDSLAVLATLAEK-  577 (685)
Q Consensus       518 ~~~~~~~A~~aL~nLs~~~~-n-------~~----~iv~~G~v~~Lv~lL~~----~~---~~~~~~~al~~L~~La~~-  577 (685)
                      .......++.+|.|+-.... .       ..    ......++..|+++|..    ..   -.+...-.+.+|..++.. 
T Consensus       202 l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~  281 (446)
T PF10165_consen  202 LDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA  281 (446)
T ss_pred             chhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc
Confidence            24567788889988821110 0       00    01223356777777742    11   135666788888888876 


Q ss_pred             hhcHHHHHh--------------cCC--hHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHH
Q 039015          578 LDGTIAILH--------------HGA--LDMIMKILDSCTSRAGKEYCVSLLLALCINGGAN  623 (685)
Q Consensus       578 ~~~~~~i~~--------------~g~--v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~  623 (685)
                      ...|..+..              .|.  -..|+++|.+. .+.+++.+...|+.||..+...
T Consensus       282 ~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vaellf~Lc~~d~~~  342 (446)
T PF10165_consen  282 REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAELLFVLCKEDASR  342 (446)
T ss_pred             HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHHHHHHHHhhhHHH
Confidence            344444322              132  47788888877 6899999999999999875433

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots

Probab=97.31  E-value=0.0036  Score=58.39  Aligned_cols=95  Identities=15%  Similarity=0.264  Sum_probs=79.5

Q ss_pred             cCCccccchhhHHHHHHHHHhhHHhHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHhccCcchhHhHHhhhHHHHH
Q 039015           44 KSEFFSTNKRNALKAIRQVHNLLIFLEELRVESADIPGSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSDRVSNQ  123 (685)
Q Consensus        44 ~~~~~~~~k~~~~~l~r~l~lL~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~~Sklyll~~~~~i~~~  123 (685)
                      .+... ..|..+..+..-++.|.|+++||...+..++.+-..-++.|...|++|+.|++.|+ +. +-|=++.-..+..+
T Consensus        26 ~~k~~-~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~s-k~-~r~n~~kk~~y~~K  102 (147)
T PF05659_consen   26 SKKSL-SFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCS-KV-RRWNLYKKPRYARK  102 (147)
T ss_pred             HHHHH-hhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhc-cc-cHHHHHhhHhHHHH
Confidence            33434 56788889999999999999999987765666658889999999999999999999 54 56777788999999


Q ss_pred             HHHHHHHHHHHhhc-cCCc
Q 039015          124 LRLFIRAIGTALDV-LPLA  141 (685)
Q Consensus       124 f~~~~~~l~~~L~~-lP~~  141 (685)
                      ++++..+|.+.++. +|+.
T Consensus       103 i~~le~~l~~f~~v~~q~~  121 (147)
T PF05659_consen  103 IEELEESLRRFIQVDLQLH  121 (147)
T ss_pred             HHHHHHHHHHHhcchhHHH
Confidence            99999999999884 5554

Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.00011  Score=83.94  Aligned_cols=49  Identities=31%  Similarity=0.619  Sum_probs=43.7

Q ss_pred             CCCccCcCccccCCC-----ceeccCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015          278 PDDFTCPISLEIMKD-----PVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQS  327 (685)
Q Consensus       278 ~~~~~CpIc~~~m~d-----Pv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~  327 (685)
                      ..+-.|+||.+.|..     |-.++|||.|+..|+.+|++. ..+||.|+..+..
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~~~  342 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVLYD  342 (543)
T ss_pred             hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhhhc
Confidence            447899999999999     788999999999999999998 8899999985443

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.28  E-value=8.6e-05  Score=69.78  Aligned_cols=45  Identities=20%  Similarity=0.451  Sum_probs=40.7

Q ss_pred             ccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015          281 FTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQ  326 (685)
Q Consensus       281 ~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~  326 (685)
                      |.|-||.+-++.||++.|||.||..|.-+-+.. ..+|-.|++...
T Consensus       197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t~  241 (259)
T COG5152         197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKATY  241 (259)
T ss_pred             eeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhhc
Confidence            999999999999999999999999998887776 678999988654

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.00013  Score=73.27  Aligned_cols=59  Identities=20%  Similarity=0.317  Sum_probs=47.0

Q ss_pred             CccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhH
Q 039015          280 DFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRII  340 (685)
Q Consensus       280 ~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i  340 (685)
                      .|.|-||.+.+.+||++.|||+||..|-.+.+.. ...|++|++.... .+.+...|....
T Consensus       241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~g-~~~~akeL~~~L  299 (313)
T KOG1813|consen  241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTHG-SFNVAKELLVSL  299 (313)
T ss_pred             CccccccccccccchhhcCCceeehhhhcccccc-CCcceeccccccc-ccchHHHHHHHH
Confidence            3999999999999999999999999998888876 6789999887643 444444444443

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.26  E-value=0.021  Score=61.82  Aligned_cols=254  Identities=17%  Similarity=0.085  Sum_probs=174.5

Q ss_pred             HHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCC-CCHHHHH
Q 039015          403 VRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKG-LKVEARQ  481 (685)
Q Consensus       403 L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~-~~~e~~~  481 (685)
                      |-.+-+.++.-|..+.-.-..+.+..++-+++.+++-.+.+++..+..+.+.-..+.+.+.--.++.-|... .+...|+
T Consensus         7 Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~   86 (371)
T PF14664_consen    7 LVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVERE   86 (371)
T ss_pred             HHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHH
Confidence            334444455555555555556666655555569999999999999999999988888888888888888764 2567799


Q ss_pred             HHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCCh
Q 039015          482 HAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSE  561 (685)
Q Consensus       482 ~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~  561 (685)
                      .|...+..+...++....+-  .|++..+|.+..+.+++.+..|+.+|.-|+..+.  ..+..+||+..|++.+. ++.-
T Consensus        87 QALkliR~~l~~~~~~~~~~--~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~-d~~~  161 (371)
T PF14664_consen   87 QALKLIRAFLEIKKGPKEIP--RGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALI-DGSF  161 (371)
T ss_pred             HHHHHHHHHHHhcCCcccCC--HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHH-hccH
Confidence            99999998877655444442  5889999999999889999999999999986543  34679999999999994 4444


Q ss_pred             hHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHH-Hhhc----C-CCh--hHHHHHHHHHHHHh-ccCcHHHHHHHHhcC
Q 039015          562 ELITDSLAVLATLAEKLDGTIAILHHGALDMIMK-ILDS----C-TSR--AGKEYCVSLLLALC-INGGANVVALLVKSP  632 (685)
Q Consensus       562 ~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~-lL~~----~-~s~--~~~e~a~~~L~~L~-~~~~~~~~~~l~~~~  632 (685)
                      .+.+..+.++..+-.+|..|.-+...-.+..++. +...    . .+.  ..-..+..++..+- .-+|  ....-..+-
T Consensus       162 ~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~G--Ll~l~~~~~  239 (371)
T PF14664_consen  162 SISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPG--LLYLSMNDF  239 (371)
T ss_pred             hHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCc--eeeeecCCc
Confidence            5888899999999999998887755334777766 3322    1 011  11223333333332 2211  000001111


Q ss_pred             CcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015          633 SLMGSLYSLLSQGSSRASKKASALIRILHEF  663 (685)
Q Consensus       633 g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~  663 (685)
                      ..+..|+..+.-+++..++..-.++--+=+.
T Consensus       240 ~~lksLv~~L~~p~~~ir~~Ildll~dllri  270 (371)
T PF14664_consen  240 RGLKSLVDSLRLPNPEIRKAILDLLFDLLRI  270 (371)
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHHHCC
Confidence            3566788888888888888777776665544

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=0.065  Score=62.58  Aligned_cols=138  Identities=14%  Similarity=0.113  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHhhcCCchhhHHHh----hCCHHHHHHhhcC-CCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHH
Q 039015          395 EKNKVAYEVRLLTKSSIFNRSCLVE----VGCIPSLLKLLSS-KDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVD  469 (685)
Q Consensus       395 ~~~~a~~~L~~La~~~~~~r~~i~~----~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~  469 (685)
                      -..-++.+|+++.+.+++-...+..    .|..+.+..+|.+ .++.++..|+.++..++.+.+.-..|++.|.+..|+.
T Consensus      1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred             HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence            3445788899998888866555543    3788888888876 7889999999999999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccC-CHHHHHHHHHHHHHhcCC
Q 039015          470 MVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDG-TDRSKKNALVAIFGLLMH  535 (685)
Q Consensus       470 lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~  535 (685)
                      +|.+.  +..|+.+..+|+.|+++.+....-.+ .|++..+..++-.. +++.+..|+..|..|..+
T Consensus      1821 lLHS~--PS~R~~vL~vLYAL~S~~~i~keA~~-hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1821 LLHSQ--PSMRARVLDVLYALSSNGQIGKEALE-HGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred             HHhcC--hHHHHHHHHHHHHHhcCcHHHHHHHh-cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence            99876  78899999999999999988777777 88888888877544 477777888888777543

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.24  E-value=0.0013  Score=55.48  Aligned_cols=88  Identities=26%  Similarity=0.431  Sum_probs=69.7

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHH
Q 039015          464 LDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFL  543 (685)
Q Consensus       464 i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv  543 (685)
                      |+.|++.|.+..++.+|..|+.+|..+          +. ..+++.|+.+++++++.++..|+.+|..+          -
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~-~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------~   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGEL----------GD-PEAIPALIELLKDEDPMVRRAAARALGRI----------G   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCC----------TH-HHHHHHHHHHHTSSSHHHHHHHHHHHHCC----------H
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CC-HhHHHHHHHHHcCCCHHHHHHHHHHHHHh----------C
Confidence            678999994343999999999998844          22 34799999999999999999999999987          2


Q ss_pred             hcCChHHHHHHhccCCChhHHHHHHHHHH
Q 039015          544 AAGAVPLLLNLLTSSDSEELITDSLAVLA  572 (685)
Q Consensus       544 ~~G~v~~Lv~lL~~~~~~~~~~~al~~L~  572 (685)
                      ...+++.|.+++.++.+..++..|+.+|+
T Consensus        60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            45589999999966666667888887764

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=97.20  E-value=0.0003  Score=75.30  Aligned_cols=54  Identities=20%  Similarity=0.324  Sum_probs=45.9

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHc----CCCCCCCCCccccCCC
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRA----GNSTCPKTGERLQSKE  329 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~----~~~~CP~c~~~l~~~~  329 (685)
                      +-..+..|.+|.+.-.||+...|.|+|||.||..|...    .+-+||.|...++-+.
T Consensus       532 enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl  589 (791)
T KOG1002|consen  532 ENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL  589 (791)
T ss_pred             cccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence            33556889999999999999999999999999998863    3579999999887653

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.13  E-value=0.0029  Score=63.81  Aligned_cols=188  Identities=19%  Similarity=0.189  Sum_probs=117.0

Q ss_pred             CCHHHHHHHHHHHHHhcCch---hHHHHhhc-CCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHH
Q 039015          475 LKVEARQHAAATLFYIASIE---EYRKLIGE-NPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPL  550 (685)
Q Consensus       475 ~~~e~~~~Aa~~L~~Ls~~~---~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~  550 (685)
                      .+++.|..|+..|..+....   +....+.. -...+..++..+.+....+.+.|+.++..|+..-++.-.-.-...+|.
T Consensus        19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~   98 (228)
T PF12348_consen   19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPP   98 (228)
T ss_dssp             SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence            38999999999999887655   33333322 013445666666666667788999999998865554433334457899


Q ss_pred             HHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCc---HHHHHH
Q 039015          551 LLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGG---ANVVAL  627 (685)
Q Consensus       551 Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~---~~~~~~  627 (685)
                      |++.+ .++...+.+.|..+|..+..+-.....+.    ++.+...+.+. ++.++..++..|..+....+   ......
T Consensus        99 Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~~~~~~~----~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~~~~~~~l~~~  172 (228)
T PF12348_consen   99 LLKKL-GDSKKFIREAANNALDAIIESCSYSPKIL----LEILSQGLKSK-NPQVREECAEWLAIILEKWGSDSSVLQKS  172 (228)
T ss_dssp             HHHGG-G---HHHHHHHHHHHHHHHTTS-H--HHH----HHHHHHHTT-S--HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred             HHHHH-ccccHHHHHHHHHHHHHHHHHCCcHHHHH----HHHHHHHHhCC-CHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence            99999 56778899999999999988633111111    24445567777 99999999999998877654   111111


Q ss_pred             HHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcccCC
Q 039015          628 LVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYERHSS  669 (685)
Q Consensus       628 l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~~~~~  669 (685)
                      ..- ..+++.+..++.++++.+|+.|..++..+.+++..+..
T Consensus       173 ~~~-~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~  213 (228)
T PF12348_consen  173 AFL-KQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE  213 (228)
T ss_dssp             HHH-HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred             chH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence            000 23577999999999999999999999999988765433

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.12  E-value=0.00071  Score=48.11  Aligned_cols=40  Identities=35%  Similarity=0.477  Sum_probs=36.7

Q ss_pred             CchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhcccc
Q 039015          411 IFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSK  450 (685)
Q Consensus       411 ~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~  450 (685)
                      ++++..+.+.|++|.|+.+|.+++..++..|+++|.||+.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            3578899999999999999999999999999999999873

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.00035  Score=71.89  Aligned_cols=47  Identities=28%  Similarity=0.570  Sum_probs=40.6

Q ss_pred             CCCccCcCccccCCC-------------ceeccCcccccHHHHHHHHHcCCCCCCCCCccc
Q 039015          278 PDDFTCPISLEIMKD-------------PVTLSTGHTYDRASILKWFRAGNSTCPKTGERL  325 (685)
Q Consensus       278 ~~~~~CpIc~~~m~d-------------Pv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l  325 (685)
                      .++-.|.||++-|..             |-.++|||.+.-+|+..|.+. ..+||+|+.++
T Consensus       285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~  344 (491)
T COG5243         285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV  344 (491)
T ss_pred             CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence            567899999988543             357899999999999999998 78999999985

>TIGR02270 conserved hypothetical protein

Probab=97.11  E-value=0.055  Score=59.35  Aligned_cols=151  Identities=16%  Similarity=0.135  Sum_probs=113.7

Q ss_pred             CCHHHHHHhhc-CCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHH
Q 039015          421 GCIPSLLKLLS-SKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKL  499 (685)
Q Consensus       421 G~ip~Lv~lL~-s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~  499 (685)
                      .+++.|+..|. ..+.++...++.++....          ...++..++..|... +..++..++.+|..          
T Consensus        54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~----------~~~~~~~L~~~L~d~-~~~vr~aaa~ALg~----------  112 (410)
T TIGR02270        54 AATELLVSALAEADEPGRVACAALALLAQE----------DALDLRSVLAVLQAG-PEGLCAGIQAALGW----------  112 (410)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHHhccC----------ChHHHHHHHHHhcCC-CHHHHHHHHHHHhc----------
Confidence            45888888884 466777666665553211          112489999999988 88899999888874          


Q ss_pred             hhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChh
Q 039015          500 IGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLD  579 (685)
Q Consensus       500 i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~  579 (685)
                      |+. .++.+.|+.+|.+.++.++..++.++..           ......+.|..+| .+.+..+...|+.+|..+..   
T Consensus       113 i~~-~~a~~~L~~~L~~~~p~vR~aal~al~~-----------r~~~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~---  176 (410)
T TIGR02270       113 LGG-RQAEPWLEPLLAASEPPGRAIGLAALGA-----------HRHDPGPALEAAL-THEDALVRAAALRALGELPR---  176 (410)
T ss_pred             CCc-hHHHHHHHHHhcCCChHHHHHHHHHHHh-----------hccChHHHHHHHh-cCCCHHHHHHHHHHHHhhcc---
Confidence            444 7789999999999999998888877765           2233567899999 68889999999999988753   


Q ss_pred             cHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHH
Q 039015          580 GTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLAL  616 (685)
Q Consensus       580 ~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L  616 (685)
                             ...++.|...+.+. ++.++..|+..|..+
T Consensus       177 -------~~a~~~L~~al~d~-~~~VR~aA~~al~~l  205 (410)
T TIGR02270       177 -------RLSESTLRLYLRDS-DPEVRFAALEAGLLA  205 (410)
T ss_pred             -------ccchHHHHHHHcCC-CHHHHHHHHHHHHHc
Confidence                   23466677777776 999999998888665

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.06  E-value=0.012  Score=55.04  Aligned_cols=129  Identities=17%  Similarity=0.289  Sum_probs=102.5

Q ss_pred             HhhcCCCcHHHHHHHhccCCH------HHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCC-ChhHHHHHHHHH
Q 039015          499 LIGENPEAIPALVDMVRDGTD------RSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSD-SEELITDSLAVL  571 (685)
Q Consensus       499 ~i~~~~g~i~~Lv~lL~~~~~------~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~~~al~~L  571 (685)
                      .+.. .||+..|++++.+|+.      .....++.|+..|-.++-.....++...|...+..+.... +..+...|+++|
T Consensus         6 EFI~-~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL   84 (160)
T PF11841_consen    6 EFIS-RDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL   84 (160)
T ss_pred             HHHh-ccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence            3445 6889999999998873      6677889999998776655566666677788888885433 678999999999


Q ss_pred             HHHhcChhcHHHHHhcCC-hHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHH
Q 039015          572 ATLAEKLDGTIAILHHGA-LDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLV  629 (685)
Q Consensus       572 ~~La~~~~~~~~i~~~g~-v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~  629 (685)
                      .++..+.......+.... ++.|+..|+.+ ++..+.+|++.+-.|....++.-++.+.
T Consensus        85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~-~~~iq~naiaLinAL~~kA~~~~r~~i~  142 (160)
T PF11841_consen   85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVS-NQEIQTNAIALINALFLKADDSKRKEIA  142 (160)
T ss_pred             HHHHhCCHHHHHHHhccCCHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            999998777666666665 99999999987 9999999999999998877665555444

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.02  E-value=0.11  Score=55.77  Aligned_cols=184  Identities=21%  Similarity=0.237  Sum_probs=127.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV  458 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i  458 (685)
                      ..+..+++.+.+.+...+..|+..+..+..           .-++|.|..+|.+.+..++..|+.+|..+-         
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~---------  102 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG---------  102 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence            357888888888888888888877544432           346899999999999999999999776653         


Q ss_pred             HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCH------------HHHHHHH
Q 039015          459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTD------------RSKKNAL  526 (685)
Q Consensus       459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~------------~~~~~A~  526 (685)
                       ...+++.++..|.+..+..+|..|+.+|..+-.           ..++..|+..+.+...            ..+..++
T Consensus       103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~  170 (335)
T COG1413         103 -DPEAVPPLVELLENDENEGVRAAAARALGKLGD-----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAA  170 (335)
T ss_pred             -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence             456789999999953389999999999988743           3347777887776552            2334444


Q ss_pred             HHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHH
Q 039015          527 VAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGK  606 (685)
Q Consensus       527 ~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~  606 (685)
                      .+|..+          -+.-.++.+...+ .+....++..|...|..+....        ....+.+...+... +..++
T Consensus       171 ~~l~~~----------~~~~~~~~l~~~l-~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~-~~~vr  230 (335)
T COG1413         171 EALGEL----------GDPEAIPLLIELL-EDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDE-SLEVR  230 (335)
T ss_pred             HHHHHc----------CChhhhHHHHHHH-hCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCC-CHHHH
Confidence            444433          3344678888888 5666788888888888887764        12234444455544 55555


Q ss_pred             HHHHHHHH
Q 039015          607 EYCVSLLL  614 (685)
Q Consensus       607 e~a~~~L~  614 (685)
                      ..++.+|.
T Consensus       231 ~~~~~~l~  238 (335)
T COG1413         231 KAALLALG  238 (335)
T ss_pred             HHHHHHhc
Confidence            54444443

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.02  E-value=0.00037  Score=70.02  Aligned_cols=48  Identities=17%  Similarity=0.418  Sum_probs=39.7

Q ss_pred             CccCcCccccCCC--c-eeccCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015          280 DFTCPISLEIMKD--P-VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQS  327 (685)
Q Consensus       280 ~~~CpIc~~~m~d--P-v~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~  327 (685)
                      ...|.||++-+.+  - +.+||.|.|...|+.+|+..-...||.|+..++.
T Consensus       323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            3689999987753  2 4569999999999999999667899999988753

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=96.89  E-value=0.1  Score=53.81  Aligned_cols=235  Identities=14%  Similarity=0.143  Sum_probs=156.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHH--HhhcCCCHHHHHHHHHHhhccc-cCcchhH
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLL--KLLSSKDSSTQENAIAALLNLS-KHCKSKS  456 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv--~lL~s~~~~~~~~A~~aL~nLs-~~~~~k~  456 (685)
                      ..+.++..+...+.++-..|.+.|..++. .+..-..+.+......+-  .+-...+.-++...+..+..++ ..+....
T Consensus       129 ilklildcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesan  207 (524)
T KOG4413|consen  129 ILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESAN  207 (524)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHh
Confidence            45667777777888888899999999997 566666777765544432  2222234445555566655554 4455566


Q ss_pred             HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCC--HHHHHHHHH----HHH
Q 039015          457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGT--DRSKKNALV----AIF  530 (685)
Q Consensus       457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~~A~~----aL~  530 (685)
                      .....|.+..|..-|+...+.-++.++......|+.....++.+.. .|.|..+..++...+  |-.+-.++.    .+.
T Consensus       208 eckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQ-eglIdlicnIIsGadsdPfekfralmgfgkffg  286 (524)
T KOG4413|consen  208 ECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQ-EGLIDLICNIISGADSDPFEKFRALMGFGKFFG  286 (524)
T ss_pred             HhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcch-hhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhc
Confidence            6668899999998888644677788999999999999999999988 999999999886432  333333333    333


Q ss_pred             HhcCCCCcHHHHHhc--CChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCC--hHHHHH-HhhcCCChhH
Q 039015          531 GLLMHSGNHWRFLAA--GAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGA--LDMIMK-ILDSCTSRAG  605 (685)
Q Consensus       531 nLs~~~~n~~~iv~~--G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~--v~~Lv~-lL~~~~s~~~  605 (685)
                      ++...+-.-..++++  -+|..-..++ ...++++.+.|..++..+.++.+|++.+...|.  ...++- ..... ...-
T Consensus       287 keaimdvseeaicealiiaidgsfEmi-EmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqn-ahak  364 (524)
T KOG4413|consen  287 KEAIMDVSEEAICEALIIAIDGSFEMI-EMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQN-AHAK  364 (524)
T ss_pred             chHHhhcCHHHHHHHHHHHHHhhHHhh-hcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhccc-ccch
Confidence            443333222222222  1234445555 345788999999999999999999999988774  333433 44332 3344


Q ss_pred             HHHHHHHHHHHhc
Q 039015          606 KEYCVSLLLALCI  618 (685)
Q Consensus       606 ~e~a~~~L~~L~~  618 (685)
                      ++.++-+|.+++.
T Consensus       365 qeaaihaLaaIag  377 (524)
T KOG4413|consen  365 QEAAIHALAAIAG  377 (524)
T ss_pred             HHHHHHHHHHhhc
Confidence            5667777777764

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.81  E-value=0.15  Score=57.74  Aligned_cols=255  Identities=15%  Similarity=0.174  Sum_probs=143.2

Q ss_pred             hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccCcch-
Q 039015          377 MKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLSKHCKS-  454 (685)
Q Consensus       377 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~-  454 (685)
                      .+..++.|+.+|...|+.++-.|+..|..||+.++.|--.+     -|.+..+|.+ .|-=+...-+..+.+|+-.+.- 
T Consensus       179 lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRL  253 (877)
T KOG1059|consen  179 LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRL  253 (877)
T ss_pred             HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchh
Confidence            34456677777776777777777777777777666655433     3555665544 3333445555666666655432 


Q ss_pred             hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHH--HhcCc-hhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHH
Q 039015          455 KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLF--YIASI-EEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFG  531 (685)
Q Consensus       455 k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~--~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~n  531 (685)
                      ..     -.+++|..++.+..-+...-.++.++.  +++.. ++.-..|.-   ++..|-.++.+.++..+--++-|+.-
T Consensus       254 gK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqL---CvqKLr~fiedsDqNLKYlgLlam~K  325 (877)
T KOG1059|consen  254 GK-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQL---CVQKLRIFIEDSDQNLKYLGLLAMSK  325 (877)
T ss_pred             hh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHH---HHHHHhhhhhcCCccHHHHHHHHHHH
Confidence            22     236777777766533334444444432  33332 233334433   67777778888888888889999888


Q ss_pred             hcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHH-HhhcCCChhHHHHHH
Q 039015          532 LLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMK-ILDSCTSRAGKEYCV  610 (685)
Q Consensus       532 Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~-lL~~~~s~~~~e~a~  610 (685)
                      +..-+.   ..+.+ --+.+++.| ++.++.++-.|+.+|..+... ++-.+|+     ..|+. +.+.. ....+..-+
T Consensus       326 I~ktHp---~~Vqa-~kdlIlrcL-~DkD~SIRlrALdLl~gmVsk-kNl~eIV-----k~LM~~~~~ae-~t~yrdell  393 (877)
T KOG1059|consen  326 ILKTHP---KAVQA-HKDLILRCL-DDKDESIRLRALDLLYGMVSK-KNLMEIV-----KTLMKHVEKAE-GTNYRDELL  393 (877)
T ss_pred             HhhhCH---HHHHH-hHHHHHHHh-ccCCchhHHHHHHHHHHHhhh-hhHHHHH-----HHHHHHHHhcc-chhHHHHHH
Confidence            864322   22222 134467888 788999999999999988764 3333332     34555 33332 235566666


Q ss_pred             HHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhc-CChHHHHHHHHHHHH
Q 039015          611 SLLLALCINGGANVVALLVKSPSLMGSLYSLLSQ-GSSRASKKASALIRI  659 (685)
Q Consensus       611 ~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~-g~~~~k~~A~~lL~~  659 (685)
                      .-+..+|..+.-......   .=.+..|++|..- |+.++..-|..++.+
T Consensus       394 ~~II~iCS~snY~~ItdF---EWYlsVlveLa~l~~~~~G~~I~eQi~Dv  440 (877)
T KOG1059|consen  394 TRIISICSQSNYQYITDF---EWYLSVLVELARLEGTRHGSLIAEQIIDV  440 (877)
T ss_pred             HHHHHHhhhhhhhhhhhH---HHHHHHHHHHHhccccchhhHHHHHHHHH
Confidence            666677766432211111   1123455555543 344444444444433

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.73  E-value=0.038  Score=64.01  Aligned_cols=168  Identities=17%  Similarity=0.213  Sum_probs=118.1

Q ss_pred             hcCCCHHHHHHHHHHH-HHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHH
Q 039015          388 LLEGTSEEKNKVAYEV-RLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDF  466 (685)
Q Consensus       388 L~s~~~~~~~~a~~~L-~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~  466 (685)
                      |.+++...|..|++.+ ..++. +...      .-..|-+++...+.|.++..-.--=|.+.+...+....+    ++..
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~-G~dm------ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNt   96 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSL-GEDM------SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNT   96 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhc-CCCh------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHH
Confidence            5666777777777664 34443 3221      122455566666777887777766666767666543333    3667


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcC
Q 039015          467 IVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAG  546 (685)
Q Consensus       467 Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G  546 (685)
                      +..=|++. ++..|..|..++..|    ...+.++.   +++++.+++.++++.+++.|+-|++++  +.-.+....+.|
T Consensus        97 i~kDl~d~-N~~iR~~AlR~ls~l----~~~el~~~---~~~~ik~~l~d~~ayVRk~Aalav~kl--y~ld~~l~~~~g  166 (757)
T COG5096          97 IQKDLQDP-NEEIRGFALRTLSLL----RVKELLGN---IIDPIKKLLTDPHAYVRKTAALAVAKL--YRLDKDLYHELG  166 (757)
T ss_pred             HHhhccCC-CHHHHHHHHHHHHhc----ChHHHHHH---HHHHHHHHccCCcHHHHHHHHHHHHHH--HhcCHhhhhccc
Confidence            77777777 889998888888777    33455554   788888888888889999999888887  444555667788


Q ss_pred             ChHHHHHHhccCCChhHHHHHHHHHHHHhcC
Q 039015          547 AVPLLLNLLTSSDSEELITDSLAVLATLAEK  577 (685)
Q Consensus       547 ~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~  577 (685)
                      .+..+..++ .+.++.++..|+..|..+...
T Consensus       167 ~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         167 LIDILKELV-ADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence            888888888 677888888888888888553

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=96.61  E-value=0.0043  Score=43.98  Aligned_cols=40  Identities=23%  Similarity=0.388  Sum_probs=35.7

Q ss_pred             hhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015          494 EEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM  534 (685)
Q Consensus       494 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  534 (685)
                      ++++..+.+ .|+++.|++++.+++++.++.|+++|.||+.
T Consensus         2 ~~~~~~i~~-~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVD-AGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            357778888 9999999999998899999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=96.60  E-value=0.013  Score=63.73  Aligned_cols=263  Identities=14%  Similarity=0.124  Sum_probs=176.4

Q ss_pred             HHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcch-hHHHHhcCcHHHHHHHhcC
Q 039015          395 EKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS-KSMVVESGGLDFIVDMVKK  473 (685)
Q Consensus       395 ~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~~i~~~g~i~~Lv~lL~~  473 (685)
                      .-..++..|..+++.-..-|.-+..+....+|+++|+.++..+.--+...++|+..--.| +..+.+.|.|..|+.++.+
T Consensus       405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s  484 (743)
T COG5369         405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS  484 (743)
T ss_pred             HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence            344566677788876667788888999999999999987777777788888998755444 8999999999999999998


Q ss_pred             CCCHHHHHHHHHHHHHhcCchhHH--HHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC----cHHHHHhcCC
Q 039015          474 GLKVEARQHAAATLFYIASIEEYR--KLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG----NHWRFLAAGA  547 (685)
Q Consensus       474 ~~~~e~~~~Aa~~L~~Ls~~~~~~--~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~----n~~~iv~~G~  547 (685)
                      . +...|.+..|+|.+|..+++.-  -.... .-++..++++..++.-.+....+..|.|+..+..    .+.-.+++.-
T Consensus       485 K-DdaLqans~wvlrHlmyncq~~ekf~~La-kig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p  562 (743)
T COG5369         485 K-DDALQANSEWVLRHLMYNCQKNEKFKFLA-KIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATP  562 (743)
T ss_pred             c-hhhhhhcchhhhhhhhhcCcchhhhhhHH-hcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecCh
Confidence            7 7889999999999999877544  23333 3468889999888777888899999999976432    2332333322


Q ss_pred             ----hHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHH-hcCC-hHHHHHHhh---------cCCCh---------
Q 039015          548 ----VPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAIL-HHGA-LDMIMKILD---------SCTSR---------  603 (685)
Q Consensus       548 ----v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~-~~g~-v~~Lv~lL~---------~~~s~---------  603 (685)
                          ...|++.+ ...++......+-+|.++|.+.+....++ +... +..+-++|-         -|+.+         
T Consensus       563 ~~ylfk~l~~k~-e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~  641 (743)
T COG5369         563 RRYLFKRLIDKY-EENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISY  641 (743)
T ss_pred             HHHHHHHHHHHH-HhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccce
Confidence                22344444 33455556666778888877666665543 3332 333333322         11100         


Q ss_pred             -------------------------------h---HHHHHHHHHHHHhcc--CcH------HHHHHHHhcCCcHHHHHHH
Q 039015          604 -------------------------------A---GKEYCVSLLLALCIN--GGA------NVVALLVKSPSLMGSLYSL  641 (685)
Q Consensus       604 -------------------------------~---~~e~a~~~L~~L~~~--~~~------~~~~~l~~~~g~i~~L~~L  641 (685)
                                                     .   ......+++.++...  +.+      +..+.+.. .|+-+.|+.+
T Consensus       642 ~~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~-~G~~e~l~k~  720 (743)
T COG5369         642 TIVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCA-NGIREWLVKI  720 (743)
T ss_pred             eeecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHH-ccHHHHHHHH
Confidence                                           0   111122222222211  111      23445555 7888888888


Q ss_pred             HhcCChHHHHHHHHHHHHHH
Q 039015          642 LSQGSSRASKKASALIRILH  661 (685)
Q Consensus       642 l~~g~~~~k~~A~~lL~~l~  661 (685)
                      ....+..+++++..+|..++
T Consensus       721 q~~~Sl~vrek~~taL~~l~  740 (743)
T COG5369         721 QAKDSLIVREKIGTALENLR  740 (743)
T ss_pred             hccCcHHHHHHHHHHHHhhh
Confidence            88888899999999998875

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.54  E-value=0.1  Score=57.55  Aligned_cols=272  Identities=16%  Similarity=0.131  Sum_probs=171.4

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhhcCCchhh-HHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH-hcC
Q 039015          385 SDRLLEGTSEEKNKVAYEVRLLTKSSIFNRS-CLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV-ESG  462 (685)
Q Consensus       385 v~~L~s~~~~~~~~a~~~L~~La~~~~~~r~-~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~-~~g  462 (685)
                      ..++..++......+++.+-.+-+.-.-.+. .+--.+.||.|-.-+...++.++..-+.-|..|=.-++ .+.+- -..
T Consensus       130 L~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~-~~m~~yl~~  208 (675)
T KOG0212|consen  130 LCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD-LEMISYLPS  208 (675)
T ss_pred             HHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc-HHHHhcchH
Confidence            3444444444445556655555543222222 55556778888777777788888877777666543333 23332 467


Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHH
Q 039015          463 GLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRF  542 (685)
Q Consensus       463 ~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~i  542 (685)
                      .++.|..+|... +.++|..+-.+|.++-..=.+..........++.|+.-+++..+..+..|+.-|.-...-.++....
T Consensus       209 ~ldGLf~~LsD~-s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~  287 (675)
T KOG0212|consen  209 LLDGLFNMLSDS-SDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLL  287 (675)
T ss_pred             HHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhh
Confidence            788899999988 8999987777666543211222222233567999999999999999999999999888777766666


Q ss_pred             HhcCChHHHHHHhccCCChhHHHHHHH---HHHHHhcChhcHHHHHhcCC-hHHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 039015          543 LAAGAVPLLLNLLTSSDSEELITDSLA---VLATLAEKLDGTIAILHHGA-LDMIMKILDSCTSRAGKEYCVSLLLALCI  618 (685)
Q Consensus       543 v~~G~v~~Lv~lL~~~~~~~~~~~al~---~L~~La~~~~~~~~i~~~g~-v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~  618 (685)
                      .-+|+...++..+...+.+...+.+..   .|..+...+..... .+-|. +..+.+.+.+. ...++-.+..-+..|-.
T Consensus       288 ~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~  365 (675)
T KOG0212|consen  288 YLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYH  365 (675)
T ss_pred             hhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHh
Confidence            677888888888832222233333322   34555555555544 45554 67777777766 77777777777766665


Q ss_pred             cCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015          619 NGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF  663 (685)
Q Consensus       619 ~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~  663 (685)
                      ..+.+   .+.....+.+.|+.-+++.++.+-..+..++..+...
T Consensus       366 ~~p~q---l~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s  407 (675)
T KOG0212|consen  366 KAPGQ---LLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS  407 (675)
T ss_pred             hCcch---hhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence            54433   2333345677777777777777666666666655443

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=96.50  E-value=0.0022  Score=65.50  Aligned_cols=50  Identities=28%  Similarity=0.576  Sum_probs=44.5

Q ss_pred             CCCCCccCcCccccCCCceecc-CcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015          276 LTPDDFTCPISLEIMKDPVTLS-TGHTYDRASILKWFRAGNSTCPKTGERLQ  326 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~-cghtfcr~ci~~~~~~~~~~CP~c~~~l~  326 (685)
                      ..++.-.||+|..--.+|..+. +|..||..||-.+... +.+||+|+.+..
T Consensus       296 l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~  346 (357)
T KOG0826|consen  296 LPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPAS  346 (357)
T ss_pred             CCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcch
Confidence            5678899999999999998774 7999999999999996 899999988764

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=96.48  E-value=0.16  Score=54.46  Aligned_cols=163  Identities=23%  Similarity=0.286  Sum_probs=112.7

Q ss_pred             hCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHH
Q 039015          420 VGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKL  499 (685)
Q Consensus       420 ~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~  499 (685)
                      .-.++.++.+|.+.+..++..|...+..+.          ..-+++.+..++... +..+|..|+.+|..+         
T Consensus        42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~-~~~vr~~a~~aLg~~---------  101 (335)
T COG1413          42 PEAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDE-DPRVRDAAADALGEL---------  101 (335)
T ss_pred             hhhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCC-CHHHHHHHHHHHHcc---------
Confidence            356889999999998999999988854432          456799999999988 888888888855443         


Q ss_pred             hhcCCCcHHHHHHHhc-cCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHH-HHhcC
Q 039015          500 IGENPEAIPALVDMVR-DGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLA-TLAEK  577 (685)
Q Consensus       500 i~~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~-~La~~  577 (685)
                       +. ..+++.|+.++. +++..++..|+.+|..+          .+..++..|+..+. +.....   +...+. .+...
T Consensus       102 -~~-~~a~~~li~~l~~d~~~~vR~~aa~aL~~~----------~~~~a~~~l~~~l~-~~~~~~---a~~~~~~~~~~~  165 (335)
T COG1413         102 -GD-PEAVPPLVELLENDENEGVRAAAARALGKL----------GDERALDPLLEALQ-DEDSGS---AAAALDAALLDV  165 (335)
T ss_pred             -CC-hhHHHHHHHHHHcCCcHhHHHHHHHHHHhc----------CchhhhHHHHHHhc-cchhhh---hhhhccchHHHH
Confidence             33 568999999998 58889999999999887          33344888999984 332211   111110 00000


Q ss_pred             -hhcHHHHH---hcCChHHHHHHhhcCCChhHHHHHHHHHHHHhcc
Q 039015          578 -LDGTIAIL---HHGALDMIMKILDSCTSRAGKEYCVSLLLALCIN  619 (685)
Q Consensus       578 -~~~~~~i~---~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~  619 (685)
                       ......+.   ....++.+...+... ...++..|+.+|..+...
T Consensus       166 r~~a~~~l~~~~~~~~~~~l~~~l~~~-~~~vr~~Aa~aL~~~~~~  210 (335)
T COG1413         166 RAAAAEALGELGDPEAIPLLIELLEDE-DADVRRAAASALGQLGSE  210 (335)
T ss_pred             HHHHHHHHHHcCChhhhHHHHHHHhCc-hHHHHHHHHHHHHHhhcc
Confidence             00011112   222478888888877 788999999999888876

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=96.46  E-value=0.15  Score=57.05  Aligned_cols=269  Identities=17%  Similarity=0.200  Sum_probs=171.2

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHH-HHHHhhccccCcchhHHH
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQEN-AIAALLNLSKHCKSKSMV  458 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~-A~~aL~nLs~~~~~k~~i  458 (685)
                      ..+.+.+.+.+.....+..|.+.+..+..+.  .-..+.+.+.+..|-....+........ +.-+.-....+-   ..-
T Consensus       135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~L---g~~  209 (569)
T KOG1242|consen  135 VLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNL---GPP  209 (569)
T ss_pred             HHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhc---CCC
Confidence            4566677778888889999999999988633  4566777888999988887754433332 222211111000   023


Q ss_pred             HhcCcHHHHHHHhcC---CCCHHHHHHHHHHHHHhc-CchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015          459 VESGGLDFIVDMVKK---GLKVEARQHAAATLFYIA-SIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM  534 (685)
Q Consensus       459 ~~~g~i~~Lv~lL~~---~~~~e~~~~Aa~~L~~Ls-~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  534 (685)
                      .+.+.++.+..+|.+   . ...+|..|..+...+- ..+.+..     .-.+|.++.-+.....+.+..++..|..|+.
T Consensus       210 ~EPyiv~~lp~il~~~~d~-~~~Vr~Aa~~a~kai~~~~~~~aV-----K~llpsll~~l~~~kWrtK~aslellg~m~~  283 (569)
T KOG1242|consen  210 FEPYIVPILPSILTNFGDK-INKVREAAVEAAKAIMRCLSAYAV-----KLLLPSLLGSLLEAKWRTKMASLELLGAMAD  283 (569)
T ss_pred             CCchHHhhHHHHHHHhhcc-chhhhHHHHHHHHHHHHhcCcchh-----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            356667777666652   3 4566665555554331 1222221     2234555554444467889999999999998


Q ss_pred             CCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHH------------------------HH------
Q 039015          535 HSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTI------------------------AI------  584 (685)
Q Consensus       535 ~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~------------------------~i------  584 (685)
                      .........-..+||.+.+.| .+..++++..+-.+|..++.--++..                        .+      
T Consensus       284 ~ap~qLs~~lp~iiP~lsevl-~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV  362 (569)
T KOG1242|consen  284 CAPKQLSLCLPDLIPVLSEVL-WDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFV  362 (569)
T ss_pred             hchHHHHHHHhHhhHHHHHHH-ccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeee
Confidence            888888888899999999999 78889999999999988875222111                        01      


Q ss_pred             --HhcCChHHHHHHhhcC---CChhHHHHHHHHHHHHhccC-cHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHH
Q 039015          585 --LHHGALDMIMKILDSC---TSRAGKEYCVSLLLALCING-GANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIR  658 (685)
Q Consensus       585 --~~~g~v~~Lv~lL~~~---~s~~~~e~a~~~L~~L~~~~-~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~  658 (685)
                        ++...+..++.+++.+   .+...+..++.+.+|+|.-- ++.......  .-++|-|...+.+.-|.+|.-|+..|.
T Consensus       363 ~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl--~~Llp~lk~~~~d~~PEvR~vaarAL~  440 (569)
T KOG1242|consen  363 AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL--PSLLPGLKENLDDAVPEVRAVAARALG  440 (569)
T ss_pred             eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH--HHHhhHHHHHhcCCChhHHHHHHHHHH
Confidence              1122234445555432   25567788999999999865 233333332  346777888888887888887777774


Q ss_pred             HHHH
Q 039015          659 ILHE  662 (685)
Q Consensus       659 ~l~~  662 (685)
                      .+.+
T Consensus       441 ~l~e  444 (569)
T KOG1242|consen  441 ALLE  444 (569)
T ss_pred             HHHH
Confidence            4444

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=96.40  E-value=0.035  Score=60.65  Aligned_cols=200  Identities=11%  Similarity=0.143  Sum_probs=142.4

Q ss_pred             HHHHHHhhccccCcch-hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-chhHHHHhhcCCCcHHHHHHHhcc
Q 039015          439 ENAIAALLNLSKHCKS-KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIAS-IEEYRKLIGENPEAIPALVDMVRD  516 (685)
Q Consensus       439 ~~A~~aL~nLs~~~~~-k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~  516 (685)
                      ..++..|..+|..-.. |.-+.+..+.++|+++|.++ ...+.--+...++|+.. ....+..+.+ .|.|..|+.++.+
T Consensus       407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~P-eimi~~~~t~~icn~vv~fsnL~~~fL~-~~iIdvl~~~v~s  484 (743)
T COG5369         407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNP-EIMIEFPDTIDICNKVVPFSNLGAGFLE-KSIIDVLVNLVMS  484 (743)
T ss_pred             HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCc-cceeeccchhhhhheeeeccchHHHHHH-hhHHHHHHHHhhc
Confidence            3445556666655533 77788899999999999986 45555566777788754 3466777777 8999999999998


Q ss_pred             CCHHHHHHHHHHHHHhcCCCC--cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC----hhcHHHHHhcCC-
Q 039015          517 GTDRSKKNALVAIFGLLMHSG--NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK----LDGTIAILHHGA-  589 (685)
Q Consensus       517 ~~~~~~~~A~~aL~nLs~~~~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~----~~~~~~i~~~g~-  589 (685)
                      .+...+++..|.|+++-.+.+  .+-+.+..-++..++.+. +++.-.+.+.++.+|.|+.-+    ++.++-+....- 
T Consensus       485 KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~  563 (743)
T COG5369         485 KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPR  563 (743)
T ss_pred             chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChH
Confidence            888889999999999987665  355678888899999999 788889999999999999652    222332222221 


Q ss_pred             ---hHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHh
Q 039015          590 ---LDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLS  643 (685)
Q Consensus       590 ---v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~  643 (685)
                         ...|++.++.. +|-..+..+-+|.+++..++. ....+......+..+.+++.
T Consensus       564 ~ylfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~-l~~~V~~q~~~L~~i~eil~  618 (743)
T COG5369         564 RYLFKRLIDKYEEN-NPMEILEGCYILVRNAACDDT-LDYIVQSQEDMLDSIFEILD  618 (743)
T ss_pred             HHHHHHHHHHHHhc-CchhhhhhHHHHHHHHhccch-HHHHHHhHHHHHHHHHHHHH
Confidence               24455666666 888888888999998877643 34444442444444444443

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=96.39  E-value=0.0013  Score=68.94  Aligned_cols=35  Identities=17%  Similarity=0.468  Sum_probs=31.7

Q ss_pred             CCCccCcCccccCCCceeccCcccccHHHHHHHHH
Q 039015          278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFR  312 (685)
Q Consensus       278 ~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~  312 (685)
                      ++++.||||...+++|++++|||+.|+.|-...+-
T Consensus         2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~   36 (699)
T KOG4367|consen    2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV   36 (699)
T ss_pred             cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence            57899999999999999999999999999876554

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.38  E-value=0.068  Score=59.86  Aligned_cols=173  Identities=17%  Similarity=0.152  Sum_probs=124.1

Q ss_pred             hCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchh---HHHHh--cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch
Q 039015          420 VGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSK---SMVVE--SGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE  494 (685)
Q Consensus       420 ~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k---~~i~~--~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~  494 (685)
                      ..++|.|..+|.+++-..++-|..+|..+..+....   +..-.  .-.+|.++++.++. ++..|..|.+.+-......
T Consensus       127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~-spkiRs~A~~cvNq~i~~~  205 (885)
T KOG2023|consen  127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHP-SPKIRSHAVGCVNQFIIIQ  205 (885)
T ss_pred             hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCC-ChhHHHHHHhhhhheeecC
Confidence            567999999999999999999999999998776431   11111  23588999999999 9999999998886554333


Q ss_pred             hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHH
Q 039015          495 EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATL  574 (685)
Q Consensus       495 ~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L  574 (685)
                      . ...+......++.|..+-.+.+++++++.+.+|..|......+..--=.++|+.++..- .+.++++.-+|+.....+
T Consensus       206 ~-qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~t-qd~dE~VALEACEFwla~  283 (885)
T KOG2023|consen  206 T-QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRT-QDVDENVALEACEFWLAL  283 (885)
T ss_pred             c-HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHc-cCcchhHHHHHHHHHHHH
Confidence            2 22222224478888888878889999999999998865443332111134566666666 677888999999999999


Q ss_pred             hcChhcHHHHHhcC--ChHHHHH
Q 039015          575 AEKLDGTIAILHHG--ALDMIMK  595 (685)
Q Consensus       575 a~~~~~~~~i~~~g--~v~~Lv~  595 (685)
                      |..+..+..+...=  -+|.|++
T Consensus       284 aeqpi~~~~L~p~l~kliPvLl~  306 (885)
T KOG2023|consen  284 AEQPICKEVLQPYLDKLIPVLLS  306 (885)
T ss_pred             hcCcCcHHHHHHHHHHHHHHHHc
Confidence            99987776654332  2566654

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.37  E-value=0.78  Score=45.86  Aligned_cols=233  Identities=16%  Similarity=0.164  Sum_probs=148.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhh-CCHHHHHH-------hhcC-----CCHHHHHHHHHHhhc
Q 039015          381 ANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEV-GCIPSLLK-------LLSS-----KDSSTQENAIAALLN  447 (685)
Q Consensus       381 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~-G~ip~Lv~-------lL~s-----~~~~~~~~A~~aL~n  447 (685)
                      +..++-.+.+  +..+..|+-+|..--+..++-...+-.. |.+..|++       .|..     ....-..+|+..|.-
T Consensus        28 ~~~~i~~l~~--~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQc  105 (293)
T KOG3036|consen   28 AYQLILSLVS--PPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQC  105 (293)
T ss_pred             hhhHHHHhhC--CchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHH
Confidence            3444444443  3445566655544433223333333332 65555554       1111     233456688888899


Q ss_pred             cccCcchhHHHHhcCcHHHHHHHhcCC----CCHHHHHHHHHHHHHhcCch--hHHHHhhcCCCcHHHHHHHhccCCHHH
Q 039015          448 LSKHCKSKSMVVESGGLDFIVDMVKKG----LKVEARQHAAATLFYIASIE--EYRKLIGENPEAIPALVDMVRDGTDRS  521 (685)
Q Consensus       448 Ls~~~~~k~~i~~~g~i~~Lv~lL~~~----~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~  521 (685)
                      ++.+++.|..+..+..---+-.+|..+    ...-.|..+.+++..|..++  +.-..+.. .++||..++.+..|+...
T Consensus       106 vASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~-TeIVPlCLrime~GSelS  184 (293)
T KOG3036|consen  106 VASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLT-TEIVPLCLRIMESGSELS  184 (293)
T ss_pred             HhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHH-hhhHHHHHHHHhcccHHH
Confidence            999999999999877655555555433    13456889999999998766  33344445 899999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCcHHHHHhc----CC----hHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcC--Ch-
Q 039015          522 KKNALVAIFGLLMHSGNHWRFLAA----GA----VPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHG--AL-  590 (685)
Q Consensus       522 ~~~A~~aL~nLs~~~~n~~~iv~~----G~----v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g--~v-  590 (685)
                      |..|...+..+-.++..-..+.+.    -+    ...++.-|.+.++..+...++.+..+|+.++..+.++...-  ++ 
T Consensus       185 KtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~clPd~Lr  264 (293)
T KOG3036|consen  185 KTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRSCLPDQLR  264 (293)
T ss_pred             HHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhhCcchhc
Confidence            999999988887777643333321    12    22233333356788899999999999999999988874421  11 


Q ss_pred             -HHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 039015          591 -DMIMKILDSCTSRAGKEYCVSLLLALCI  618 (685)
Q Consensus       591 -~~Lv~lL~~~~s~~~~e~a~~~L~~L~~  618 (685)
                       ...-.++++  ++..+..-...+.++|.
T Consensus       265 d~tfs~~l~~--D~~~k~~l~~ll~~l~~  291 (293)
T KOG3036|consen  265 DGTFSLLLKD--DPETKQWLQQLLKNLCT  291 (293)
T ss_pred             cchHHHHHhc--ChhHHHHHHHHHHHhcc
Confidence             112224443  55666666666666654

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.28  E-value=0.68  Score=52.53  Aligned_cols=275  Identities=19%  Similarity=0.173  Sum_probs=141.5

Q ss_pred             hhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCC--HHHHHHHHHHhhccccCc
Q 039015          375 GAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKD--SSTQENAIAALLNLSKHC  452 (685)
Q Consensus       375 ~~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~--~~~~~~A~~aL~nLs~~~  452 (685)
                      +.++..+..+...|.|.++.-+.-|+.++.++-  +.++++.+..  -||   ++|-+++  .-++..|+-+|+.|-...
T Consensus       107 dl~klvin~iknDL~srn~~fv~LAL~~I~niG--~re~~ea~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~s  179 (938)
T KOG1077|consen  107 DLMKLVINSIKNDLSSRNPTFVCLALHCIANIG--SREMAEAFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKS  179 (938)
T ss_pred             HHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhc--cHhHHHHhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcC
Confidence            345567888888898999988889999998885  3455555432  244   5665533  446666666666665432


Q ss_pred             chhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch--hHHHHhhc-------------------------CCC
Q 039015          453 KSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE--EYRKLIGE-------------------------NPE  505 (685)
Q Consensus       453 ~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~-------------------------~~g  505 (685)
                      +  +.+--.+....++++|... +..+...++..+-.|+...  +++..+..                         .+=
T Consensus       180 p--Dl~~~~~W~~riv~LL~D~-~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PW  256 (938)
T KOG1077|consen  180 P--DLVNPGEWAQRIVHLLDDQ-HMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPW  256 (938)
T ss_pred             c--cccChhhHHHHHHHHhCcc-ccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChH
Confidence            1  1222234556666666655 3444444444444444322  22222211                         000


Q ss_pred             cHHHHHHHhcc----CCHHHHH---HHHHHHHHhcCCCCcHHHHHhcC-------------------------ChHHHHH
Q 039015          506 AIPALVDMVRD----GTDRSKK---NALVAIFGLLMHSGNHWRFLAAG-------------------------AVPLLLN  553 (685)
Q Consensus       506 ~i~~Lv~lL~~----~~~~~~~---~A~~aL~nLs~~~~n~~~iv~~G-------------------------~v~~Lv~  553 (685)
                      ..-.|+++|+.    .++..+.   ..+.-|.|.+..+.-...+.+..                         ++..|-+
T Consensus       257 L~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~  336 (938)
T KOG1077|consen  257 LQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQ  336 (938)
T ss_pred             HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            11234444442    1122222   23334444443221111111111                         1222333


Q ss_pred             HhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCC
Q 039015          554 LLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPS  633 (685)
Q Consensus       554 lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g  633 (685)
                      +| ++....++-.|+.-++.|+++....+++..+  ...++..|+...+-.++..|+-.|..+|..  +++..++.    
T Consensus       337 fl-s~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak~IV~----  407 (938)
T KOG1077|consen  337 FL-SHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAKQIVA----  407 (938)
T ss_pred             Hh-hcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch--hhHHHHHH----
Confidence            33 2223334444444444444444444444333  455666777433778899999999999987  44444443    


Q ss_pred             cHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcccCCCC
Q 039015          634 LMGSLYSLLSQGSSRASKKASALIRILHEFYERHSSGS  671 (685)
Q Consensus       634 ~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~~~~~~~  671 (685)
                         -|+..+.+-+..+|+.-.-=..+|.+-+..+|+-+
T Consensus       408 ---elLqYL~tAd~sireeivlKvAILaEKyAtDy~Wy  442 (938)
T KOG1077|consen  408 ---ELLQYLETADYSIREEIVLKVAILAEKYATDYSWY  442 (938)
T ss_pred             ---HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchh
Confidence               34555555677777766666666776666666544

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.24  E-value=0.00096  Score=49.38  Aligned_cols=46  Identities=26%  Similarity=0.326  Sum_probs=39.3

Q ss_pred             ccCcCccccCCCceeccCccc-ccHHHHHHHHHcCCCCCCCCCcccc
Q 039015          281 FTCPISLEIMKDPVTLSTGHT-YDRASILKWFRAGNSTCPKTGERLQ  326 (685)
Q Consensus       281 ~~CpIc~~~m~dPv~~~cght-fcr~ci~~~~~~~~~~CP~c~~~l~  326 (685)
                      -.|.||.+--.|.|+..|||. .|..|=.+.+..++..||.||.++.
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            579999999999999999996 5888877777767999999998764

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=96.20  E-value=0.0015  Score=69.30  Aligned_cols=48  Identities=27%  Similarity=0.554  Sum_probs=39.4

Q ss_pred             CCCCCccCcCccccCCCce----eccCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015          276 LTPDDFTCPISLEIMKDPV----TLSTGHTYDRASILKWFRAGNSTCPKTGERLQ  326 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv----~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~  326 (685)
                      .+-+--+||+|++-|.+-+    ++.|.|+|...|+.+|+.   .+||.||....
T Consensus       171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~  222 (493)
T KOG0804|consen  171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS  222 (493)
T ss_pred             CcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence            4455569999999999876    347999999999999965   48999987655

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=96.19  E-value=0.0012  Score=53.32  Aligned_cols=47  Identities=21%  Similarity=0.526  Sum_probs=23.7

Q ss_pred             CccCcCccccCC-C---ceec----cCcccccHHHHHHHHHc--C--------CCCCCCCCcccc
Q 039015          280 DFTCPISLEIMK-D---PVTL----STGHTYDRASILKWFRA--G--------NSTCPKTGERLQ  326 (685)
Q Consensus       280 ~~~CpIc~~~m~-d---Pv~~----~cghtfcr~ci~~~~~~--~--------~~~CP~c~~~l~  326 (685)
                      +..|+||..... +   |+.+    .|+++|...|+.+||..  +        ..+||.|+.+++
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            578999998765 2   4443    69999999999999974  1        125999998875

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=96.14  E-value=0.013  Score=62.07  Aligned_cols=51  Identities=29%  Similarity=0.535  Sum_probs=45.8

Q ss_pred             ccCcCccccCCCceecc-CcccccHHHHHHHHHcCCCCCCCCCccccCCCCcc
Q 039015          281 FTCPISLEIMKDPVTLS-TGHTYDRASILKWFRAGNSTCPKTGERLQSKELLV  332 (685)
Q Consensus       281 ~~CpIc~~~m~dPv~~~-cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~  332 (685)
                      +.|.|++++-++||+.+ +||.|++.-|++++.+ ..+||+++++++..++++
T Consensus         1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~   52 (506)
T KOG0289|consen    1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVE   52 (506)
T ss_pred             CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeee
Confidence            46999999999999885 9999999999999998 889999999998766655

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.14  E-value=1.3  Score=50.55  Aligned_cols=226  Identities=13%  Similarity=0.170  Sum_probs=148.0

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhcccc-CcchhH
Q 039015          378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSK-HCKSKS  456 (685)
Q Consensus       378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~-~~~~k~  456 (685)
                      +...+-++.+|+++-+-+|.+|+-.+..+.-.-++   .+.  -.+|.|+.-|.++|+.++..|+.+++.|+. ++.|--
T Consensus       143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe---Alr--~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL  217 (877)
T KOG1059|consen  143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE---ALR--PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL  217 (877)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH---hHh--hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence            45567778899999999999999888776543332   222  357999999999999999999999999995 556644


Q ss_pred             HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHH-HHHHHHHHHH--Hhc
Q 039015          457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDR-SKKNALVAIF--GLL  533 (685)
Q Consensus       457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~-~~~~A~~aL~--nLs  533 (685)
                      .+     -|.+.++|-...+.=..........+|+-..   ..+|.  ..+++|.+++.+.... ..-.++.++.  |++
T Consensus       218 ~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplE---PRLgK--KLieplt~li~sT~AmSLlYECvNTVVa~s~s  287 (877)
T KOG1059|consen  218 QL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLE---PRLGK--KLIEPITELMESTVAMSLLYECVNTVVAVSMS  287 (877)
T ss_pred             cc-----cHHHHHHHhccCCCeehHHHHHHHhhccccC---chhhh--hhhhHHHHHHHhhHHHHHHHHHHHHheeehhc
Confidence            33     3556666654433333444455555555332   33443  4789999999876532 2222222222  455


Q ss_pred             CCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHH
Q 039015          534 MHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE-KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSL  612 (685)
Q Consensus       534 ~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~  612 (685)
                      ....++...++. +|+.|-.++ .+.+..+.--++-++..++. |+....+   +  -..++++|.+. ++.++-.|+-.
T Consensus       288 ~g~~d~~asiqL-CvqKLr~fi-edsDqNLKYlgLlam~KI~ktHp~~Vqa---~--kdlIlrcL~Dk-D~SIRlrALdL  359 (877)
T KOG1059|consen  288 SGMSDHSASIQL-CVQKLRIFI-EDSDQNLKYLGLLAMSKILKTHPKAVQA---H--KDLILRCLDDK-DESIRLRALDL  359 (877)
T ss_pred             cCCCCcHHHHHH-HHHHHhhhh-hcCCccHHHHHHHHHHHHhhhCHHHHHH---h--HHHHHHHhccC-CchhHHHHHHH
Confidence            444454444443 466666666 67778888777777777765 3432222   2  24567788877 89999999999


Q ss_pred             HHHHhccCcHHHHHHH
Q 039015          613 LLALCINGGANVVALL  628 (685)
Q Consensus       613 L~~L~~~~~~~~~~~l  628 (685)
                      |..+...  .+..+++
T Consensus       360 l~gmVsk--kNl~eIV  373 (877)
T KOG1059|consen  360 LYGMVSK--KNLMEIV  373 (877)
T ss_pred             HHHHhhh--hhHHHHH
Confidence            9998876  4544443

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.12  E-value=0.17  Score=51.21  Aligned_cols=194  Identities=16%  Similarity=0.148  Sum_probs=130.0

Q ss_pred             CHHHHHHHHHHHHHHhhcCCchhhHHHhh-CCHHHHHH-------hhcCCC-----HHHHHHHHHHhhccccCcchhHHH
Q 039015          392 TSEEKNKVAYEVRLLTKSSIFNRSCLVEV-GCIPSLLK-------LLSSKD-----SSTQENAIAALLNLSKHCKSKSMV  458 (685)
Q Consensus       392 ~~~~~~~a~~~L~~La~~~~~~r~~i~~~-G~ip~Lv~-------lL~s~~-----~~~~~~A~~aL~nLs~~~~~k~~i  458 (685)
                      +++.|..|+.+|..--+..++-.-.+-.. |.+..|++       .|+.+.     ..-..+|+..|.-++.|++.|..+
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F   87 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF   87 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence            67778877766554332222222223333 77777765       233221     244557788888889999999999


Q ss_pred             HhcCcHHHHHHHhcCCC----CHHHHHHHHHHHHHhcCch--hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 039015          459 VESGGLDFIVDMVKKGL----KVEARQHAAATLFYIASIE--EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGL  532 (685)
Q Consensus       459 ~~~g~i~~Lv~lL~~~~----~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL  532 (685)
                      .++...--|..+|+...    -.-.|..+.+++..|...+  +.-..+.. .+.||..++.+..|+.-.|..|.-.+..+
T Consensus        88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~-tEiiplcLr~me~GselSKtvAtfIlqKI  166 (262)
T PF04078_consen   88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQ-TEIIPLCLRIMEFGSELSKTVATFILQKI  166 (262)
T ss_dssp             HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHC-TTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHh-hchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            99888777777776441    2355788999999998755  44555555 89999999999999999999999999888


Q ss_pred             cCCCCcHHHHHh--------cCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHh
Q 039015          533 LMHSGNHWRFLA--------AGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILH  586 (685)
Q Consensus       533 s~~~~n~~~iv~--------~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~  586 (685)
                      -.++..-..+.+        ..+...++.-|..++++.+......+-..|+.++.++.++.+
T Consensus       167 L~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~  228 (262)
T PF04078_consen  167 LLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ  228 (262)
T ss_dssp             HHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred             HcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence            766653333222        123444444444677889999999999999999999998864

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.10  E-value=0.27  Score=58.83  Aligned_cols=218  Identities=17%  Similarity=0.202  Sum_probs=133.9

Q ss_pred             cCCCHHHHHHHHHHhhccccCcchhHHHHh--cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--chhHHHHhhcCCCc
Q 039015          431 SSKDSSTQENAIAALLNLSKHCKSKSMVVE--SGGLDFIVDMVKKGLKVEARQHAAATLFYIAS--IEEYRKLIGENPEA  506 (685)
Q Consensus       431 ~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~--~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~--~~~~~~~i~~~~g~  506 (685)
                      ++.+..+|..+..+|..|+..+.+.....+  ...-..+...++.. ...++..+..+|..|-.  ..+....+..   .
T Consensus       664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~-~~~~~~~rl~~L~~L~~~~~~e~~~~i~k---~  739 (1176)
T KOG1248|consen  664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSS-SSPAQASRLKCLKRLLKLLSAEHCDLIPK---L  739 (1176)
T ss_pred             ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccHHHHHHHHH---H
Confidence            345789999999999999887554433332  23344444555544 45555555555555432  2466666655   6


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcC------ChHHHHHHhccC-CChhHHHHH--HHHHHHHhcC
Q 039015          507 IPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAG------AVPLLLNLLTSS-DSEELITDS--LAVLATLAEK  577 (685)
Q Consensus       507 i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G------~v~~Lv~lL~~~-~~~~~~~~a--l~~L~~La~~  577 (685)
                      |+-++-.++..+...+..|-.+|+.++.    .....+.|      ++...+.++... ..+.....|  +-++..+...
T Consensus       740 I~EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e  815 (1176)
T KOG1248|consen  740 IPEVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE  815 (1176)
T ss_pred             HHHHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence            7777777788888899999999988873    11122222      444455555211 011222222  2223333221


Q ss_pred             hhcHHHHHhcCChHHHHH----HhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHH
Q 039015          578 LDGTIAILHHGALDMIMK----ILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKA  653 (685)
Q Consensus       578 ~~~~~~i~~~g~v~~Lv~----lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A  653 (685)
                         ...+++.+.++.+++    .|.++ ++.+...|++.+..++..-++.......  +-+++.+..++++++...+.+.
T Consensus       816 ---~~~~ld~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~~pe~~l~~~~--~~LL~sll~ls~d~k~~~r~Kv  889 (1176)
T KOG1248|consen  816 ---FKNILDDETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYKFPEECLSPHL--EELLPSLLALSHDHKIKVRKKV  889 (1176)
T ss_pred             ---HhccccHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHcCCHHHHhhhH--HHHHHHHHHHHHhhhHHHHHHH
Confidence               111233333444443    56666 9999999999999999887665555444  2468999999999999999999


Q ss_pred             HHHHHHHHH
Q 039015          654 SALIRILHE  662 (685)
Q Consensus       654 ~~lL~~l~~  662 (685)
                      .-|+..|-+
T Consensus       890 r~LlekLir  898 (1176)
T KOG1248|consen  890 RLLLEKLIR  898 (1176)
T ss_pred             HHHHHHHHH
Confidence            988877644

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.09  E-value=0.32  Score=55.87  Aligned_cols=141  Identities=15%  Similarity=0.199  Sum_probs=78.4

Q ss_pred             HHHHhccCCHHHHHHHHHHHHHhcCCCC---cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHH---
Q 039015          510 LVDMVRDGTDRSKKNALVAIFGLLMHSG---NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIA---  583 (685)
Q Consensus       510 Lv~lL~~~~~~~~~~A~~aL~nLs~~~~---n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~---  583 (685)
                      ++++|..++++....-...|..++.+.+   |....+=...|..++.+.   ++.+++..|+.+|...-.++++-..   
T Consensus       257 lLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~---~~~~LrvlainiLgkFL~n~d~NirYva  333 (866)
T KOG1062|consen  257 LLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR---SNSGLRVLAINILGKFLLNRDNNIRYVA  333 (866)
T ss_pred             HHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc---CCchHHHHHHHHHHHHhcCCccceeeee
Confidence            3444555555555555566666665443   333333333444444443   3455666666666655443322111   


Q ss_pred             ------HHhcC--Ch----HHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHH
Q 039015          584 ------ILHHG--AL----DMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASK  651 (685)
Q Consensus       584 ------i~~~g--~v----~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~  651 (685)
                            +++..  ++    ..+++.|++. +...+..|+..+..|...  .+++..+.       -|+.++.+.++.-|.
T Consensus       334 Ln~L~r~V~~d~~avqrHr~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~mv~-------eLl~fL~~~d~~~k~  403 (866)
T KOG1062|consen  334 LNMLLRVVQQDPTAVQRHRSTILECLKDP-DVSIKRRALELSYALVNE--SNVRVMVK-------ELLEFLESSDEDFKA  403 (866)
T ss_pred             hhhHHhhhcCCcHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHHHHH-------HHHHHHHhccHHHHH
Confidence                  01111  11    5567788887 889999999999998876  44444333       567777777766663


Q ss_pred             -HHHHHHHHHHHh
Q 039015          652 -KASALIRILHEF  663 (685)
Q Consensus       652 -~A~~lL~~l~~~  663 (685)
                       .|..+..+-.+|
T Consensus       404 ~~as~I~~laEkf  416 (866)
T KOG1062|consen  404 DIASKIAELAEKF  416 (866)
T ss_pred             HHHHHHHHHHHhc
Confidence             444455444444

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.09  E-value=0.21  Score=58.82  Aligned_cols=221  Identities=15%  Similarity=0.135  Sum_probs=152.5

Q ss_pred             HHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHh-hccccCcchhHHHHhcCcHHHHHHHhcCC-
Q 039015          397 NKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAAL-LNLSKHCKSKSMVVESGGLDFIVDMVKKG-  474 (685)
Q Consensus       397 ~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL-~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~-  474 (685)
                      .+|+..|..+-.-.+..-..-..-|..|..++||.++..+++---+-+= ..|+.++..+.-+++.++-.-.+++|..+ 
T Consensus       488 lRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~  567 (1387)
T KOG1517|consen  488 LRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQ  567 (1387)
T ss_pred             HHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcC
Confidence            3444444444332222222333459999999999998888776555444 46678877888888888888888888763 


Q ss_pred             -CCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccC-CHHHHHHHHHHHHHhcC-CCCcHHHHHhcCChHH
Q 039015          475 -LKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDG-TDRSKKNALVAIFGLLM-HSGNHWRFLAAGAVPL  550 (685)
Q Consensus       475 -~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~-~~~n~~~iv~~G~v~~  550 (685)
                       -++|-|..||-+|..+..+- -.++...+ .+.|..-+..|.++ .+-.+.=.+-+|..|-. +++.|..=++.++.+.
T Consensus       568 ~~~~EqrtmaAFVLAviv~nf~lGQ~acl~-~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahek  646 (1387)
T KOG1517|consen  568 AIPPEQRTMAAFVLAVIVRNFKLGQKACLN-GNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEK  646 (1387)
T ss_pred             CCCHHHHHHHHHHHHHHHcccchhHHHhcc-ccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHH
Confidence             24578888998998887765 33444444 78888888888775 35666677778887765 4557777788999999


Q ss_pred             HHHHhccCCChhHHHHHHHHHHHHhcC-----hhcHHHH---Hh--------cCChH----HHHHHhhcCCChhHHHHHH
Q 039015          551 LLNLLTSSDSEELITDSLAVLATLAEK-----LDGTIAI---LH--------HGALD----MIMKILDSCTSRAGKEYCV  610 (685)
Q Consensus       551 Lv~lL~~~~~~~~~~~al~~L~~La~~-----~~~~~~i---~~--------~g~v~----~Lv~lL~~~~s~~~~e~a~  610 (685)
                      |+.+| +++-++++..|+-+|..+..+     ++....+   .+        ...+.    .++.++..| ++.++..-+
T Consensus       647 L~~~L-sD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~  724 (1387)
T KOG1517|consen  647 LILLL-SDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVV  724 (1387)
T ss_pred             HHHHh-cCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHH
Confidence            99999 788899999999999988763     2222221   11        11122    455567777 888887777


Q ss_pred             HHHHHHhccC
Q 039015          611 SLLLALCING  620 (685)
Q Consensus       611 ~~L~~L~~~~  620 (685)
                      -+|..+..+.
T Consensus       725 v~ls~~~~g~  734 (1387)
T KOG1517|consen  725 VALSHFVVGY  734 (1387)
T ss_pred             HHHHHHHHhh
Confidence            7777777654

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.06  E-value=0.18  Score=56.69  Aligned_cols=225  Identities=16%  Similarity=0.172  Sum_probs=149.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccC------cch
Q 039015          381 ANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKH------CKS  454 (685)
Q Consensus       381 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~------~~~  454 (685)
                      +..|......++..++..|++.|-.|.....-.+.+      ....+++|++.+..++..|+.++.-.+.-      .++
T Consensus       200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~------Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~  273 (823)
T KOG2259|consen  200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKAC------YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES  273 (823)
T ss_pred             HHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHH------HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence            444777778889999999999988887633222222      34567889888899999997766444321      122


Q ss_pred             -hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh-------HHHHhh----------------c--------
Q 039015          455 -KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE-------YRKLIG----------------E--------  502 (685)
Q Consensus       455 -k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-------~~~~i~----------------~--------  502 (685)
                       ...+ ...+...+.+.+... +..+|..|+.+|..+-...+       .|+.++                .        
T Consensus       274 ~e~kl-~D~aF~~vC~~v~D~-sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk  351 (823)
T KOG2259|consen  274 EEEKL-KDAAFSSVCRAVRDR-SLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGK  351 (823)
T ss_pred             hhhhh-HHHHHHHHHHHHhcC-ceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCc
Confidence             2222 244677778888777 77777777777765432221       111111                0        


Q ss_pred             -------------------CCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-cHHHHHhcCChHHHHHHhccCCChh
Q 039015          503 -------------------NPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG-NHWRFLAAGAVPLLLNLLTSSDSEE  562 (685)
Q Consensus       503 -------------------~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~  562 (685)
                                         .+|+=.++|.-|.++-.+++++|+..++.|+.... ...+     ++..|+.++ +++.+.
T Consensus       352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMf-NDE~~~  425 (823)
T KOG2259|consen  352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMF-NDEIEV  425 (823)
T ss_pred             cccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHh-ccHHHH
Confidence                               14555677777777668999999999999987544 3332     467799999 788889


Q ss_pred             HHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHH
Q 039015          563 LITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVA  626 (685)
Q Consensus       563 ~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~  626 (685)
                      ++..|.-.|..++.+-..++     .-++.+.+.|.+. ++.+++..-.+|.+ |.-.+.++..
T Consensus       426 VRL~ai~aL~~Is~~l~i~e-----eql~~il~~L~D~-s~dvRe~l~elL~~-~~~~d~~~i~  482 (823)
T KOG2259|consen  426 VRLKAIFALTMISVHLAIRE-----EQLRQILESLEDR-SVDVREALRELLKN-ARVSDLECID  482 (823)
T ss_pred             HHHHHHHHHHHHHHHheecH-----HHHHHHHHHHHhc-CHHHHHHHHHHHHh-cCCCcHHHHH
Confidence            99999999999988733222     3356777778776 88888877766654 4443333333

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.04  E-value=0.0043  Score=60.75  Aligned_cols=54  Identities=17%  Similarity=0.463  Sum_probs=46.8

Q ss_pred             CCCccCcCccccCCCce----eccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcc
Q 039015          278 PDDFTCPISLEIMKDPV----TLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLV  332 (685)
Q Consensus       278 ~~~~~CpIc~~~m~dPv----~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~  332 (685)
                      ...|.||+|...+.+.+    .-+|||.||..|.++.+.. ...||+|+.++.++++++
T Consensus       219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI~  276 (303)
T KOG3039|consen  219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDIIG  276 (303)
T ss_pred             ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceEe
Confidence            36799999999999854    2389999999999998876 789999999999888766

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=95.92  E-value=0.047  Score=53.39  Aligned_cols=123  Identities=19%  Similarity=0.188  Sum_probs=92.5

Q ss_pred             CCHHHHHHHHHHhhccccCcchhHHHHh----------------cCcHHHHHHHhcCCC-----CHHHHHHHHHHHHHhc
Q 039015          433 KDSSTQENAIAALLNLSKHCKSKSMVVE----------------SGGLDFIVDMVKKGL-----KVEARQHAAATLFYIA  491 (685)
Q Consensus       433 ~~~~~~~~A~~aL~nLs~~~~~k~~i~~----------------~g~i~~Lv~lL~~~~-----~~e~~~~Aa~~L~~Ls  491 (685)
                      ++......++.+|.||+..+.+...+.+                ..++..|+..+..|.     ........+.++.|++
T Consensus         7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS   86 (192)
T PF04063_consen    7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS   86 (192)
T ss_pred             CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence            4455677888999999998888765542                236888888887731     3455678999999999


Q ss_pred             CchhHHHHhhcCC-Cc--HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhc---CChHHHHHHh
Q 039015          492 SIEEYRKLIGENP-EA--IPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAA---GAVPLLLNLL  555 (685)
Q Consensus       492 ~~~~~~~~i~~~~-g~--i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~---G~v~~Lv~lL  555 (685)
                      ..++.|..+.... +.  +..|+..+.+.+.--+.-++.+|.|+|.+.+.+..+...   +++|.|+--|
T Consensus        87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPL  156 (192)
T PF04063_consen   87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPL  156 (192)
T ss_pred             CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhc
Confidence            9999999997733 33  667777777777767778999999999999999888874   4555555544

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=95.91  E-value=0.23  Score=55.55  Aligned_cols=228  Identities=14%  Similarity=0.134  Sum_probs=142.1

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHH
Q 039015          378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSM  457 (685)
Q Consensus       378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~  457 (685)
                      +..++.++..+.......+..++..|..+++. ..-.-.......||.+...|-+..+++++.+..+|.++..-.+|...
T Consensus       253 K~llpsll~~l~~~kWrtK~aslellg~m~~~-ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI  331 (569)
T KOG1242|consen  253 KLLLPSLLGSLLEAKWRTKMASLELLGAMADC-APKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI  331 (569)
T ss_pred             hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHh-chHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH
Confidence            33455556555444677888999999998874 34455666778999999999999999999999999999887777662


Q ss_pred             HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhcc----CCHHHHHHHHHHHHHhc
Q 039015          458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRD----GTDRSKKNALVAIFGLL  533 (685)
Q Consensus       458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~----~~~~~~~~A~~aL~nLs  533 (685)
                         .-.++.|+..+... +..+.    .++..|.... .-..+ . .-.+..++.+|+.    -+...++.++..+.|+|
T Consensus       332 ---~~~ip~Lld~l~dp-~~~~~----e~~~~L~~tt-FV~~V-~-~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~  400 (569)
T KOG1242|consen  332 ---QKIIPTLLDALADP-SCYTP----ECLDSLGATT-FVAEV-D-APSLALMVPILKRGLAERSTSIKRKTAIIIDNMC  400 (569)
T ss_pred             ---HHHHHHHHHHhcCc-ccchH----HHHHhhccee-eeeee-c-chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHH
Confidence               22477788888766 22221    2223332211 11111 1 2345555555544    34667889999999999


Q ss_pred             CCCCcHHHHHhc--CChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHH
Q 039015          534 MHSGNHWRFLAA--GAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVS  611 (685)
Q Consensus       534 ~~~~n~~~iv~~--G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~  611 (685)
                      .--++...+..-  -.+|.|-..+ .+..++++..+..+|.-+-..-.....   .+.+|.+.+.++...+...+.-++.
T Consensus       401 ~LveDp~~lapfl~~Llp~lk~~~-~d~~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e~~~~~k~~~~~~g~aq  476 (569)
T KOG1242|consen  401 KLVEDPKDLAPFLPSLLPGLKENL-DDAVPEVRAVAARALGALLERLGEVSF---DDLIPELSETLTSEKSLVDRSGAAQ  476 (569)
T ss_pred             HhhcCHHHHhhhHHHHhhHHHHHh-cCCChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHHhhccchhhhhhHHHhh
Confidence            766554444321  1344444444 344688998888888766553222221   3446777776655434455555666


Q ss_pred             HHHHHhccCc
Q 039015          612 LLLALCINGG  621 (685)
Q Consensus       612 ~L~~L~~~~~  621 (685)
                      .|..++...+
T Consensus       477 ~l~evl~~~~  486 (569)
T KOG1242|consen  477 DLSEVLAGLG  486 (569)
T ss_pred             hHHHHHhccc
Confidence            6666665443

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=95.91  E-value=0.023  Score=49.30  Aligned_cols=65  Identities=20%  Similarity=0.229  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhh--cCCCHHHHHHHHHHhhccccCc-chhHHHHh
Q 039015          396 KNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLL--SSKDSSTQENAIAALLNLSKHC-KSKSMVVE  460 (685)
Q Consensus       396 ~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL--~s~~~~~~~~A~~aL~nLs~~~-~~k~~i~~  460 (685)
                      +...++.|.+++..++.++..+.+.|+||.+++.-  +..+|-+++.|+.++.||..+. +|+..|.+
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            45667889999999999999999999999999854  4578999999999999999765 77888874

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.86  E-value=0.0026  Score=63.09  Aligned_cols=58  Identities=26%  Similarity=0.480  Sum_probs=45.4

Q ss_pred             CCCCCccCcCccccCCCce----------eccCcccccHHHHHHHHHcC-CCCCCCCCccccCCCCccc
Q 039015          276 LTPDDFTCPISLEIMKDPV----------TLSTGHTYDRASILKWFRAG-NSTCPKTGERLQSKELLVN  333 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv----------~~~cghtfcr~ci~~~~~~~-~~~CP~c~~~l~~~~l~~n  333 (685)
                      .-.++-.|.+|++-+.+.+          .++|+|.|...||.-|.--| ..+||.|++.+....+..|
T Consensus       220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn  288 (328)
T KOG1734|consen  220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN  288 (328)
T ss_pred             CCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence            4456789999998877665          56999999999999998755 5699999988765444444

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=95.86  E-value=0.23  Score=54.85  Aligned_cols=248  Identities=21%  Similarity=0.204  Sum_probs=136.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH-
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV-  458 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i-  458 (685)
                      ..++|-.+|++.-+-+..++++.+..++..+.  -..+.+ -+|..|-.+|++.+...|-.|+++|..|+.-.+.+... 
T Consensus       265 ~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vc  341 (898)
T COG5240         265 LRPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVC  341 (898)
T ss_pred             HHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeec
Confidence            35677777777667788899999988887541  222222 34777888999999999999999999998654332221 


Q ss_pred             -------H-h---cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHH
Q 039015          459 -------V-E---SGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALV  527 (685)
Q Consensus       459 -------~-~---~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~  527 (685)
                             + +   .=..-+|..+|+.| +.+....-...+-++..                       +-++..|..++.
T Consensus       342 N~evEsLIsd~Nr~IstyAITtLLKTG-t~e~idrLv~~I~sfvh-----------------------D~SD~FKiI~id  397 (898)
T COG5240         342 NKEVESLISDENRTISTYAITTLLKTG-TEETIDRLVNLIPSFVH-----------------------DMSDGFKIIAID  397 (898)
T ss_pred             ChhHHHHhhcccccchHHHHHHHHHcC-chhhHHHHHHHHHHHHH-----------------------hhccCceEEeHH
Confidence                   1 1   11233444555555 44444433333333322                       111222222333


Q ss_pred             HHHHhcCCCCcH---------HHHHhcCC-------hHHHHHHhccCCChhHHHHHHHHHHHHhcChh-cH--HHH----
Q 039015          528 AIFGLLMHSGNH---------WRFLAAGA-------VPLLLNLLTSSDSEELITDSLAVLATLAEKLD-GT--IAI----  584 (685)
Q Consensus       528 aL~nLs~~~~n~---------~~iv~~G~-------v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~-~~--~~i----  584 (685)
                      |+..||..-+.+         ..+.+.|+       |..+.+++.  ..++.++.|+..|+..-.+-+ .+  ..|    
T Consensus       398 a~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~--~~p~skEraLe~LC~fIEDcey~~I~vrIL~iL  475 (898)
T COG5240         398 ALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAME--NDPDSKERALEVLCTFIEDCEYHQITVRILGIL  475 (898)
T ss_pred             HHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHh--hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHh
Confidence            333333211111         01122232       333444442  234555666655555433211 11  111    


Q ss_pred             HhcC------C--hHHHHH--HhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHH
Q 039015          585 LHHG------A--LDMIMK--ILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKAS  654 (685)
Q Consensus       585 ~~~g------~--v~~Lv~--lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~  654 (685)
                      .+.|      +  +..+..  +|.   +.-++..|+.+|...+.+-.+.+...     .+...|...+.+.++.++..|.
T Consensus       476 G~EgP~a~~P~~yvrhIyNR~iLE---N~ivRsaAv~aLskf~ln~~d~~~~~-----sv~~~lkRclnD~DdeVRdrAs  547 (898)
T COG5240         476 GREGPRAKTPGKYVRHIYNRLILE---NNIVRSAAVQALSKFALNISDVVSPQ-----SVENALKRCLNDQDDEVRDRAS  547 (898)
T ss_pred             cccCCCCCCcchHHHHHHHHHHHh---hhHHHHHHHHHHHHhccCccccccHH-----HHHHHHHHHhhcccHHHHHHHH
Confidence            1111      1  233333  232   45788889999988877654433222     2355788889999999999999


Q ss_pred             HHHHHHHHhh
Q 039015          655 ALIRILHEFY  664 (685)
Q Consensus       655 ~lL~~l~~~~  664 (685)
                      -+|+.++...
T Consensus       548 f~l~~~~~~d  557 (898)
T COG5240         548 FLLRNMRLSD  557 (898)
T ss_pred             HHHHhhhhhh
Confidence            9999998644

>PF04641 Rtf2: Rtf2 RING-finger

Probab=95.83  E-value=0.0069  Score=62.46  Aligned_cols=55  Identities=16%  Similarity=0.443  Sum_probs=43.3

Q ss_pred             CCCCCccCcCccccCCCc---eec-cCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcc
Q 039015          276 LTPDDFTCPISLEIMKDP---VTL-STGHTYDRASILKWFRAGNSTCPKTGERLQSKELLV  332 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dP---v~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~  332 (685)
                      .-...|.|||++..|..-   |.+ +|||+|+..+|...-  ....||.|+.++...++++
T Consensus       109 ~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~  167 (260)
T PF04641_consen  109 NSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIP  167 (260)
T ss_pred             cCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEE
Confidence            346679999999999542   333 999999999998873  2567999999998776554

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=95.73  E-value=0.018  Score=43.91  Aligned_cols=55  Identities=27%  Similarity=0.189  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 039015          477 VEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGL  532 (685)
Q Consensus       477 ~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL  532 (685)
                      +.+|..|+.+|.+++........-.. ..+++.|+.+|.++++.++..|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            46899999999998865533333333 56999999999998999999999999875

...

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=95.71  E-value=0.5  Score=48.87  Aligned_cols=226  Identities=14%  Similarity=0.158  Sum_probs=155.9

Q ss_pred             CCHHHHHHHHHHhhccccCcchhHHHH-hcCcHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHH
Q 039015          433 KDSSTQENAIAALLNLSKHCKSKSMVV-ESGGLDFIVDMVKKGL-KVEARQHAAATLFYIASIEEYRKLIGENPEAIPAL  510 (685)
Q Consensus       433 ~~~~~~~~A~~aL~nLs~~~~~k~~i~-~~g~i~~Lv~lL~~~~-~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~L  510 (685)
                      -++-++--|+.+|.+|....+-|..+- +..+-..+++++++.. ..+.+-+..-.++-|+..+++.+.|....+.|.-|
T Consensus       161 i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl  240 (432)
T COG5231         161 IDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL  240 (432)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            355678889999999999888876665 6678888999998642 46888999999999999999887776655678888


Q ss_pred             HHHhccCC-HHHHHHHHHHHHHhcCCC--CcHHHHHhcCChHHHHHHhccC--CChhHHHHHHHHHHHHhc---------
Q 039015          511 VDMVRDGT-DRSKKNALVAIFGLLMHS--GNHWRFLAAGAVPLLLNLLTSS--DSEELITDSLAVLATLAE---------  576 (685)
Q Consensus       511 v~lL~~~~-~~~~~~A~~aL~nLs~~~--~n~~~iv~~G~v~~Lv~lL~~~--~~~~~~~~al~~L~~La~---------  576 (685)
                      +.+++... ..+..-++..+.|++.-.  +....+.-.|-+..-+++|...  .+++++...-.+=..|..         
T Consensus       241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD  320 (432)
T COG5231         241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFD  320 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            88887643 556667888899988622  3445556667677777777432  233333222111111110         


Q ss_pred             -------------C---------hhcHHHHHhcC-C-hHHHHHHhhcCCChh-HHHHHHHHHHHHhccCcHHHHHHHHhc
Q 039015          577 -------------K---------LDGTIAILHHG-A-LDMIMKILDSCTSRA-GKEYCVSLLLALCINGGANVVALLVKS  631 (685)
Q Consensus       577 -------------~---------~~~~~~i~~~g-~-v~~Lv~lL~~~~s~~-~~e~a~~~L~~L~~~~~~~~~~~l~~~  631 (685)
                                   +         ..+...+.+.+ . +..|.++++.. .|. .-..|+.=+.++.+.. ++....+.+ 
T Consensus       321 ~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n-~~nt~i~vAc~Di~~~Vr~~-PE~~~vl~K-  397 (432)
T COG5231         321 NYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSN-NPNTWICVACSDIFQLVRAS-PEINAVLSK-  397 (432)
T ss_pred             HHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcC-CCCceEeeeHhhHHHHHHhC-chHHHHHHH-
Confidence                         1         12233333333 1 57777788765 444 4456777777777766 455677777 


Q ss_pred             CCcHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 039015          632 PSLMGSLYSLLSQGSSRASKKASALIRILH  661 (685)
Q Consensus       632 ~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~  661 (685)
                      .|+-..+.+|+...++++|-.|-..++.+-
T Consensus       398 yg~k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         398 YGVKEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             hhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            899999999999999999998888887764

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=95.69  E-value=0.15  Score=47.91  Aligned_cols=120  Identities=15%  Similarity=0.145  Sum_probs=97.6

Q ss_pred             hHHHhhCCHHHHHHhhcCCC------HHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCC-CHHHHHHHHHHH
Q 039015          415 SCLVEVGCIPSLLKLLSSKD------SSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGL-KVEARQHAAATL  487 (685)
Q Consensus       415 ~~i~~~G~ip~Lv~lL~s~~------~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~-~~e~~~~Aa~~L  487 (685)
                      ..|++.||++.|++++.++.      .++...+++++.+|-.+..--....+...|..++....... +..+...|.+.|
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL   84 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL   84 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence            45778899999999998755      47888899999999988765556778888999999998663 578889999999


Q ss_pred             HHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015          488 FYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM  534 (685)
Q Consensus       488 ~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  534 (685)
                      -++..+...........=-++.|+..|+.++++.+.+|+..|-.|-.
T Consensus        85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~  131 (160)
T PF11841_consen   85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL  131 (160)
T ss_pred             HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            99988776644444435679999999999999999999888777754

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.53  E-value=0.66  Score=46.34  Aligned_cols=177  Identities=20%  Similarity=0.136  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhc----cCC-HHHHHHHHHHHHHhcCCCC--cHHHHHhcCChHHHH
Q 039015          480 RQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR----DGT-DRSKKNALVAIFGLLMHSG--NHWRFLAAGAVPLLL  552 (685)
Q Consensus       480 ~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~----~~~-~~~~~~A~~aL~nLs~~~~--n~~~iv~~G~v~~Lv  552 (685)
                      .-+|.+.|-.++++++-|..+.. ...--.|-..|.    +.. +-.+-.++++|..|...++  ....+...++||..+
T Consensus        96 VcnaL~LlQcvASHpdTr~~FL~-A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL  174 (293)
T KOG3036|consen   96 VCNALALLQCVASHPDTRRAFLR-AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL  174 (293)
T ss_pred             HHHHHHHHHHHhcCcchHHHHHH-ccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence            45888888999999999988877 554334444443    222 4567799999999997665  556678899999999


Q ss_pred             HHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcC----Ch----HHHHH-HhhcCCChhHHHHHHHHHHHHhccCcHH
Q 039015          553 NLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHG----AL----DMIMK-ILDSCTSRAGKEYCVSLLLALCINGGAN  623 (685)
Q Consensus       553 ~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g----~v----~~Lv~-lL~~~~s~~~~e~a~~~L~~L~~~~~~~  623 (685)
                      +.+ ..+++.-+..|.-++..+-.++.|-.-+++.-    +|    ..++. +.+.+ +++.-.+.+.+..+|+.+  +.
T Consensus       175 rim-e~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~p-s~RllKhviRcYlrLsdn--pr  250 (293)
T KOG3036|consen  175 RIM-ESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMP-SPRLLKHVIRCYLRLSDN--PR  250 (293)
T ss_pred             HHH-hcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCC--HH
Confidence            999 55667778889999999988888877665433    12    33333 44455 999999999999999988  67


Q ss_pred             HHHHHHhc--CCcHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 039015          624 VVALLVKS--PSLMGSLYSLLSQGSSRASKKASALIRILH  661 (685)
Q Consensus       624 ~~~~l~~~--~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~  661 (685)
                      ++..+..-  .++...=...+-..++..|+--+.+++.+.
T Consensus       251 ar~aL~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~  290 (293)
T KOG3036|consen  251 ARAALRSCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLC  290 (293)
T ss_pred             HHHHHHhhCcchhccchHHHHHhcChhHHHHHHHHHHHhc
Confidence            77766530  011111112222234455666666666543

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=95.45  E-value=0.068  Score=46.43  Aligned_cols=59  Identities=15%  Similarity=0.248  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHhc-ChhcHHHHHhcCChHHHHH--HhhcCCChhHHHHHHHHHHHHhccCcH
Q 039015          563 LITDSLAVLATLAE-KLDGTIAILHHGALDMIMK--ILDSCTSRAGKEYCVSLLLALCINGGA  622 (685)
Q Consensus       563 ~~~~al~~L~~La~-~~~~~~~i~~~g~v~~Lv~--lL~~~~s~~~~e~a~~~L~~L~~~~~~  622 (685)
                      ++...+.+|+||+. ++..+..+.+.||+|.++.  .+... +|-.+|.|+.++.+||.++.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~-nP~irEwai~aiRnL~e~n~e   63 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDH-NPFIREWAIFAIRNLCEGNPE   63 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcc-cHHHHHHHHHHHHHHHhCCHH
Confidence            35567889999987 5889999999999999998  34445 999999999999999998754

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.45  E-value=0.008  Score=63.54  Aligned_cols=50  Identities=20%  Similarity=0.400  Sum_probs=41.4

Q ss_pred             CCCCccCcCccccCCCce-----e---ccCcccccHHHHHHHHHcC------CCCCCCCCcccc
Q 039015          277 TPDDFTCPISLEIMKDPV-----T---LSTGHTYDRASILKWFRAG------NSTCPKTGERLQ  326 (685)
Q Consensus       277 ~~~~~~CpIc~~~m~dPv-----~---~~cghtfcr~ci~~~~~~~------~~~CP~c~~~l~  326 (685)
                      .-.+..|.||++...+++     .   .+|.|+||..||.+|-...      .+.||.||....
T Consensus       158 ~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  158 KSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             ccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            356899999999999887     3   4699999999999998542      478999998764

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.43  E-value=0.62  Score=53.36  Aligned_cols=239  Identities=16%  Similarity=0.126  Sum_probs=147.3

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhcCCchh---------------hHHHh---hCCHHHHHHhhcCCC-------HHHH
Q 039015          384 ISDRLLEGTSEEKNKVAYEVRLLTKSSIFNR---------------SCLVE---VGCIPSLLKLLSSKD-------SSTQ  438 (685)
Q Consensus       384 Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r---------------~~i~~---~G~ip~Lv~lL~s~~-------~~~~  438 (685)
                      -+..++|+++++..++++-...++.+.-+--               ..+.+   .+.+|.|+.+|...|       -...
T Consensus       264 tl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~  343 (859)
T KOG1241|consen  264 TLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPA  343 (859)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHH
Confidence            3455678888888888877776664322210               11111   267888998886521       1344


Q ss_pred             HHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCC
Q 039015          439 ENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGT  518 (685)
Q Consensus       439 ~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~  518 (685)
                      ..|-.+|.-++..-  +..|+. -+++.+-+-++++ ++.-++.|+-++.+.-..++-...-.-..+++|.++.++.+.+
T Consensus       344 kAAg~CL~l~A~~~--~D~Iv~-~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~s  419 (859)
T KOG1241|consen  344 KAAGVCLMLFAQCV--GDDIVP-HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPS  419 (859)
T ss_pred             HHHHHHHHHHHHHh--cccchh-hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCch
Confidence            44444444433211  223333 4555565667777 8899999999988887766433222222689999999999877


Q ss_pred             HHHHHHHHHHHHHhcCCCC--cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC--hhc----HHHHHhcCCh
Q 039015          519 DRSKKNALVAIFGLLMHSG--NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK--LDG----TIAILHHGAL  590 (685)
Q Consensus       519 ~~~~~~A~~aL~nLs~~~~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~--~~~----~~~i~~~g~v  590 (685)
                      .-++..++++|..++..-.  .-....-.+.++.|+.=|.  +.+.+..++.+++.+|+..  +..    ...... ...
T Consensus       420 l~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~--DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y  496 (859)
T KOG1241|consen  420 LWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN--DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFY  496 (859)
T ss_pred             hhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh--hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhH
Confidence            8888899999999985432  2222334556677777662  4578889999999999852  111    111211 123


Q ss_pred             HHHHH-Hhhc-----CCChhHHHHHHHHHHHHhccCcHHHHHHHH
Q 039015          591 DMIMK-ILDS-----CTSRAGKEYCVSLLLALCINGGANVVALLV  629 (685)
Q Consensus       591 ~~Lv~-lL~~-----~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~  629 (685)
                      +.++. +++.     |+....+-.|-.+|..+..++++.+-..++
T Consensus       497 ~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~  541 (859)
T KOG1241|consen  497 EAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQ  541 (859)
T ss_pred             HHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            44444 5542     223456667888999998888766554443

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=95.42  E-value=0.55  Score=49.74  Aligned_cols=184  Identities=26%  Similarity=0.257  Sum_probs=106.0

Q ss_pred             hcCCCHHHHHHHHHHhhccccCcchhHHHH--hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc---hhHHHHhhcCC
Q 039015          430 LSSKDSSTQENAIAALLNLSKHCKSKSMVV--ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASI---EEYRKLIGENP  504 (685)
Q Consensus       430 L~s~~~~~~~~A~~aL~nLs~~~~~k~~i~--~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~---~~~~~~i~~~~  504 (685)
                      |.......++.|+..|.++-...---..+.  ....+..+.+.+++| ..+.+..|+.++.-|+..   .+....+.+  
T Consensus        52 l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~--  128 (309)
T PF05004_consen   52 LTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGAGEDSEEIFE--  128 (309)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCCccHHHHHH--
Confidence            444456677777777766654433333333  234688899999999 667777777777666554   123334432  


Q ss_pred             CcHHHHHHHhccCC--HHHHHHHHHHHHHhcCCCCc-HHHHHh-cCChHH--HHHHhccC---------CChhHHHHHHH
Q 039015          505 EAIPALVDMVRDGT--DRSKKNALVAIFGLLMHSGN-HWRFLA-AGAVPL--LLNLLTSS---------DSEELITDSLA  569 (685)
Q Consensus       505 g~i~~Lv~lL~~~~--~~~~~~A~~aL~nLs~~~~n-~~~iv~-~G~v~~--Lv~lL~~~---------~~~~~~~~al~  569 (685)
                      ...|.|...+.+++  +..+..++.+|.-++....+ -..+.+ ...+..  .+..+..+         +++.+...|+.
T Consensus       129 ~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~  208 (309)
T PF05004_consen  129 ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALS  208 (309)
T ss_pred             HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHH
Confidence            47889999988765  34555666676666543221 111110 011221  11112112         13467777777


Q ss_pred             HHHHHhcC-hhcH-HHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 039015          570 VLATLAEK-LDGT-IAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCI  618 (685)
Q Consensus       570 ~L~~La~~-~~~~-~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~  618 (685)
                      .-..|... +... .... ...+|.|+.+|.+. +..++-.|-.+|.-|..
T Consensus       209 aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  209 AWALLLTTLPDSKLEDLL-EEALPALSELLDSD-DVDVRIAAGEAIALLYE  257 (309)
T ss_pred             HHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            77777654 3321 2222 23589999999987 88888877777666654

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.41  E-value=3.8  Score=47.28  Aligned_cols=274  Identities=13%  Similarity=0.109  Sum_probs=157.3

Q ss_pred             HHHHHHHHHhcCCCH-HHHHHHHHHHHHHhhcCCchhhHHHhh-CCHHHHHHhhcC--CCHHHHHHHHHHhhcccc----
Q 039015          379 LLANFISDRLLEGTS-EEKNKVAYEVRLLTKSSIFNRSCLVEV-GCIPSLLKLLSS--KDSSTQENAIAALLNLSK----  450 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~-~~~~~a~~~L~~La~~~~~~r~~i~~~-G~ip~Lv~lL~s--~~~~~~~~A~~aL~nLs~----  450 (685)
                      +.+..|+........ ..+..++.+|..+|. +..-....... .++..++.-...  ++..++..|+.+|.|--.    
T Consensus       129 ~li~~lv~nv~~~~~~~~k~~slealGyice-~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~  207 (859)
T KOG1241|consen  129 ELIVTLVSNVGEEQASMVKESSLEALGYICE-DIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKA  207 (859)
T ss_pred             HHHHHHHHhcccccchHHHHHHHHHHHHHHc-cCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHH
Confidence            356677776654443 478899999999996 33333222222 455666654433  577899999999976521    


Q ss_pred             ---CcchhHHHH--------------hcCcHHHHHHHh-----------------------cCCCCHHHHHHHHHHHHHh
Q 039015          451 ---HCKSKSMVV--------------ESGGLDFIVDMV-----------------------KKGLKVEARQHAAATLFYI  490 (685)
Q Consensus       451 ---~~~~k~~i~--------------~~g~i~~Lv~lL-----------------------~~~~~~e~~~~Aa~~L~~L  490 (685)
                         ++.+|..|+              ...++..|++++                       ++. ++++...++..-.+.
T Consensus       208 nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~-~deValQaiEFWsti  286 (859)
T KOG1241|consen  208 NFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSD-NDEVALQAIEFWSTI  286 (859)
T ss_pred             hhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHH
Confidence               222244332              112233333332                       334 566666665555545


Q ss_pred             cCch-hHHHHhh------c-----------CCCcHHHHHHHhcc--CC-----HHHHHHHHHHHHHhcCCCCcHHHHHhc
Q 039015          491 ASIE-EYRKLIG------E-----------NPEAIPALVDMVRD--GT-----DRSKKNALVAIFGLLMHSGNHWRFLAA  545 (685)
Q Consensus       491 s~~~-~~~~~i~------~-----------~~g~i~~Lv~lL~~--~~-----~~~~~~A~~aL~nLs~~~~n~~~iv~~  545 (685)
                      +... +....++      .           -.+.+|.|+++|..  ++     -..-+.|-.+|.-++.       .+..
T Consensus       287 ceEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~-------~~~D  359 (859)
T KOG1241|consen  287 CEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ-------CVGD  359 (859)
T ss_pred             HHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH-------Hhcc
Confidence            4322 2111111      1           12678889998853  21     1334555556655433       2334


Q ss_pred             CChHHHHHHhc---cCCChhHHHHHHHHHHHHhcChhcH-HHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCc
Q 039015          546 GAVPLLLNLLT---SSDSEELITDSLAVLATLAEKLDGT-IAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGG  621 (685)
Q Consensus       546 G~v~~Lv~lL~---~~~~~~~~~~al~~L~~La~~~~~~-~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~  621 (685)
                      .+|++.+..+.   ..++-.-++.|+.++..+-..++.. ..=...+++|.++.++.+. +-.+++.+++.|..+|...+
T Consensus       360 ~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~  438 (859)
T KOG1241|consen  360 DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLP  438 (859)
T ss_pred             cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhch
Confidence            45555555553   3556667788888888776654432 2234557899999999876 88999999999999998875


Q ss_pred             HHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 039015          622 ANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFY  664 (685)
Q Consensus       622 ~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~  664 (685)
                      +.+...... .+.++.|..-+.+ .++...++.|.+-.|.+..
T Consensus       439 e~~~n~~~l-~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~  479 (859)
T KOG1241|consen  439 EAIINQELL-QSKLSALLEGLND-EPRVASNVCWAFISLAEAA  479 (859)
T ss_pred             hhcccHhhh-hHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHH
Confidence            443332222 2333444443333 4666666666666666543

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=95.38  E-value=1.4  Score=50.32  Aligned_cols=277  Identities=12%  Similarity=0.110  Sum_probs=154.8

Q ss_pred             hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC--------CCHHHHHHHHHHhhc
Q 039015          376 AMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS--------KDSSTQENAIAALLN  447 (685)
Q Consensus       376 ~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s--------~~~~~~~~A~~aL~n  447 (685)
                      .++...-.+++...|.+++.+.-.++.+...|..+ ..-........+|.+....-.        ....+...++.+-..
T Consensus       633 yTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~-Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~K  711 (1172)
T KOG0213|consen  633 YTREVMLILIREFGSPDEEMKKIVLKVVKQCCATD-GVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAK  711 (1172)
T ss_pred             hHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhccc-CCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHH
Confidence            34445667777788889999988888888888643 333344444556665543322        112333333333222


Q ss_pred             cccC------------cchhHHHHhcCcHHHHHHHhcCCCCHHH--HHH-HHHHHHHhcCch-h----------HHHHhh
Q 039015          448 LSKH------------CKSKSMVVESGGLDFIVDMVKKGLKVEA--RQH-AAATLFYIASIE-E----------YRKLIG  501 (685)
Q Consensus       448 Ls~~------------~~~k~~i~~~g~i~~Lv~lL~~~~~~e~--~~~-Aa~~L~~Ls~~~-~----------~~~~i~  501 (685)
                      +-.+            +...-+-+..+.+..++..|... +.+.  -+. -=++|+.+.... +          ....++
T Consensus       712 vG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~-diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg  790 (1172)
T KOG0213|consen  712 VGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAA-DIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALG  790 (1172)
T ss_pred             hCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccc-cccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHh
Confidence            2111            11111112345566666665533 1111  111 122223332221 1          011111


Q ss_pred             c-----CCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcH---HHHHhcCChHHHHHHhccCCChhHHHHHHHHHHH
Q 039015          502 E-----NPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNH---WRFLAAGAVPLLLNLLTSSDSEELITDSLAVLAT  573 (685)
Q Consensus       502 ~-----~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~---~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~  573 (685)
                      .     .+..+...+..|.+.++.++..|+..+..|+.--.++   ..+...|+|  |.+.| ....+++.-..++++..
T Consensus       791 ~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEyl-geeypEvLgsILgAika  867 (1172)
T KOG0213|consen  791 GRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYL-GEEYPEVLGSILGAIKA  867 (1172)
T ss_pred             hccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhc-CcccHHHHHHHHHHHHH
Confidence            1     1224556667788899999999999988887433333   223334443  66777 56678888877777777


Q ss_pred             HhcChhcHHHH-HhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHH--HHHHHHhcCCcHHHHHHHHhcCChHHH
Q 039015          574 LAEKLDGTIAI-LHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGAN--VVALLVKSPSLMGSLYSLLSQGSSRAS  650 (685)
Q Consensus       574 La~~~~~~~~i-~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~--~~~~l~~~~g~i~~L~~Ll~~g~~~~k  650 (685)
                      +...-..-... =-.+.+|.|.-+|++. ...++++++..+..+|.++++.  +++-|.-    -=-|++++.+....++
T Consensus       868 I~nvigm~km~pPi~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWMRI----cfeLlelLkahkK~iR  942 (1172)
T KOG0213|consen  868 IVNVIGMTKMTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWMRI----CFELLELLKAHKKEIR  942 (1172)
T ss_pred             HHHhccccccCCChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            76532111111 0123489999999987 8899999999999999988653  2222221    1246777777777777


Q ss_pred             HHHHHHHHHHHH
Q 039015          651 KKASALIRILHE  662 (685)
Q Consensus       651 ~~A~~lL~~l~~  662 (685)
                      +.|...+-.+.+
T Consensus       943 Raa~nTfG~Iak  954 (1172)
T KOG0213|consen  943 RAAVNTFGYIAK  954 (1172)
T ss_pred             HHHHhhhhHHHH
Confidence            777655544443

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=95.38  E-value=0.019  Score=42.81  Aligned_cols=41  Identities=22%  Similarity=0.464  Sum_probs=32.1

Q ss_pred             cCcCccc--cCCCceeccCc-----ccccHHHHHHHHHc-CCCCCCCCC
Q 039015          282 TCPISLE--IMKDPVTLSTG-----HTYDRASILKWFRA-GNSTCPKTG  322 (685)
Q Consensus       282 ~CpIc~~--~m~dPv~~~cg-----htfcr~ci~~~~~~-~~~~CP~c~  322 (685)
                      .|-||++  .-.+|.+.||.     +.+.+.|+.+|+.. +..+||.|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4788886  44567778875     67899999999975 366899985

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.38  E-value=0.0085  Score=64.21  Aligned_cols=51  Identities=18%  Similarity=0.389  Sum_probs=40.3

Q ss_pred             CCCCccCcCccccCC-----------------CceeccCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015          277 TPDDFTCPISLEIMK-----------------DPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQS  327 (685)
Q Consensus       277 ~~~~~~CpIc~~~m~-----------------dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~  327 (685)
                      ....-.|+||+....                 +-+.+||.|.|.+.|+++|.+.-.-.||.|+.+++.
T Consensus       568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            556678999986543                 123459999999999999999646699999998863

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.38  E-value=0.0086  Score=62.96  Aligned_cols=60  Identities=23%  Similarity=0.495  Sum_probs=48.6

Q ss_pred             CccCcCccccCCCce-----eccCcccccHHHHHHHHHc-CCCCCCCCCccccCCCCcccHHHHhh
Q 039015          280 DFTCPISLEIMKDPV-----TLSTGHTYDRASILKWFRA-GNSTCPKTGERLQSKELLVNLVLKRI  339 (685)
Q Consensus       280 ~~~CpIc~~~m~dPv-----~~~cghtfcr~ci~~~~~~-~~~~CP~c~~~l~~~~l~~n~~l~~~  339 (685)
                      .-+||||++-+.-|+     ++.|||-|-..||++|+.. ....||.|...-..+++.+-+.++..
T Consensus         4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~q   69 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQ   69 (463)
T ss_pred             cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHH
Confidence            468999999988774     4589999999999999963 24579999888877788887777644

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=95.26  E-value=0.61  Score=47.32  Aligned_cols=143  Identities=20%  Similarity=0.215  Sum_probs=104.2

Q ss_pred             CHHHHHHHHHHHHHh-cCchhHHHHhhcCCCcHHHHHHHhc-------cCC--H---HHHHHHHHHHHHhcCCCCcHHHH
Q 039015          476 KVEARQHAAATLFYI-ASIEEYRKLIGENPEAIPALVDMVR-------DGT--D---RSKKNALVAIFGLLMHSGNHWRF  542 (685)
Q Consensus       476 ~~e~~~~Aa~~L~~L-s~~~~~~~~i~~~~g~i~~Lv~lL~-------~~~--~---~~~~~A~~aL~nLs~~~~n~~~i  542 (685)
                      +++.|++|..-|..- ...++....+....|.+..|++=+-       .++  .   .-.-+|+..|..++.+++.|..+
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F   87 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF   87 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence            578888887666544 3345666677776788888876332       221  1   22347888888999999999999


Q ss_pred             HhcCChHHHHHHhccCC----ChhHHHHHHHHHHHHhcC--hhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHH
Q 039015          543 LAAGAVPLLLNLLTSSD----SEELITDSLAVLATLAEK--LDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLAL  616 (685)
Q Consensus       543 v~~G~v~~Lv~lL~~~~----~~~~~~~al~~L~~La~~--~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L  616 (685)
                      +++.+.-.|.-.|....    -+.++-.++++++.|.+.  ++...-+.+.+.+|..++.|..| +...|-.|.-++..+
T Consensus        88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G-selSKtvAtfIlqKI  166 (262)
T PF04078_consen   88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG-SELSKTVATFILQKI  166 (262)
T ss_dssp             HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS--HHHHHHHHHHHHHH
T ss_pred             HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc-cHHHHHHHHHHHHHH
Confidence            99999888888885322    267788899999999884  44555567777799999999999 999999999998877


Q ss_pred             hcc
Q 039015          617 CIN  619 (685)
Q Consensus       617 ~~~  619 (685)
                      -.+
T Consensus       167 L~d  169 (262)
T PF04078_consen  167 LLD  169 (262)
T ss_dssp             HHS
T ss_pred             Hcc
Confidence            654

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.22  E-value=0.014  Score=61.71  Aligned_cols=50  Identities=24%  Similarity=0.447  Sum_probs=42.0

Q ss_pred             CCCCCccCcCccccCCC---ceeccCcccccHHHHHHHHHcCC--CCCCCCCccc
Q 039015          276 LTPDDFTCPISLEIMKD---PVTLSTGHTYDRASILKWFRAGN--STCPKTGERL  325 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~d---Pv~~~cghtfcr~ci~~~~~~~~--~~CP~c~~~l  325 (685)
                      ....-|.|||..+--.|   |+.+.|||..++..+.+....|.  +.||.|....
T Consensus       330 ~fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~  384 (394)
T KOG2817|consen  330 HFHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ  384 (394)
T ss_pred             cccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence            34556899999877664   89999999999999999999887  8999996543

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.20  E-value=0.17  Score=56.75  Aligned_cols=106  Identities=21%  Similarity=0.264  Sum_probs=77.7

Q ss_pred             HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015          456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM  534 (685)
Q Consensus       456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  534 (685)
                      ..|+..|+-.++|+-|... -.|+|..|++.+..|+.+. ...      ..++..|++++.++...++..|+.+|..++.
T Consensus       367 ~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA------~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~  439 (823)
T KOG2259|consen  367 ESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFA------VRALDFLVDMFNDEIEVVRLKAIFALTMISV  439 (823)
T ss_pred             cccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcH------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            3466778888888888877 7899999999999998754 322      2368999999988888999999999999887


Q ss_pred             CCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHH
Q 039015          535 HSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATL  574 (685)
Q Consensus       535 ~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L  574 (685)
                      +-.     ++..-++.+...| .+.+.++++..-.+|.+.
T Consensus       440 ~l~-----i~eeql~~il~~L-~D~s~dvRe~l~elL~~~  473 (823)
T KOG2259|consen  440 HLA-----IREEQLRQILESL-EDRSVDVREALRELLKNA  473 (823)
T ss_pred             Hhe-----ecHHHHHHHHHHH-HhcCHHHHHHHHHHHHhc
Confidence            632     3334455666666 455666666655555544

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=95.11  E-value=0.021  Score=45.99  Aligned_cols=47  Identities=23%  Similarity=0.432  Sum_probs=35.6

Q ss_pred             CCccCcCccccCCC----ceec-cCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015          279 DDFTCPISLEIMKD----PVTL-STGHTYDRASILKWFRAGNSTCPKTGERLQ  326 (685)
Q Consensus       279 ~~~~CpIc~~~m~d----Pv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~  326 (685)
                      -.-.||-|..-|..    |+.. .|.|.|.-.||.+|+.. ...||.+++...
T Consensus        30 im~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~   81 (88)
T COG5194          30 IMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV   81 (88)
T ss_pred             ccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence            34567777765521    3333 69999999999999998 789999998753

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=95.08  E-value=0.054  Score=41.24  Aligned_cols=55  Identities=18%  Similarity=0.117  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 039015          435 SSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYI  490 (685)
Q Consensus       435 ~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~L  490 (685)
                      +.++..|+++|.+++........-....+++.|+.+|+++ +.++|.+|+.+|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDD-DDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence            3678999999999887776655556788999999999888 889999999999765

...

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=95.04  E-value=0.55  Score=51.86  Aligned_cols=163  Identities=13%  Similarity=0.169  Sum_probs=114.8

Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCH----HHHHHHHHHHHHhcCCCCc
Q 039015          463 GLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTD----RSKKNALVAIFGLLMHSGN  538 (685)
Q Consensus       463 ~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~----~~~~~A~~aL~nLs~~~~n  538 (685)
                      ....+.+++.+| +...+..|...|.+|+.+......+.. ..++..|..++.+|+.    ......+.|+..|-.+.-.
T Consensus        84 ~a~~i~e~l~~~-~~~~~~~a~k~l~sls~d~~fa~efi~-~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvv  161 (713)
T KOG2999|consen   84 YAKRIMEILTEG-NNISKMEALKELDSLSLDPTFAEEFIR-CSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVV  161 (713)
T ss_pred             HHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHh-cchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhcee
Confidence            355677888999 899998999999999999998888888 7889999999998864    4555666666665433322


Q ss_pred             HHHHHhcCChHHHHHHhc-cCCChhHHHHHHHHHHHHhcChhcHHH-HHhcCChHHHHHHhhcCCChhHHHHHHHHHHHH
Q 039015          539 HWRFLAAGAVPLLLNLLT-SSDSEELITDSLAVLATLAEKLDGTIA-ILHHGALDMIMKILDSCTSRAGKEYCVSLLLAL  616 (685)
Q Consensus       539 ~~~iv~~G~v~~Lv~lL~-~~~~~~~~~~al~~L~~La~~~~~~~~-i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L  616 (685)
                      -...+....|.....+.. .-.+..+...|+.+|.++..+...... |.+.--+..|+..+..+ +......|++.+-.+
T Consensus       162 sW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~-n~~i~~~aial~nal  240 (713)
T KOG2999|consen  162 SWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVS-NQRIQTCAIALLNAL  240 (713)
T ss_pred             eeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhc-chHHHHHHHHHHHHH
Confidence            222222233333333331 123456678899999999887665554 44444599999988887 778888899999888


Q ss_pred             hccCcHHHHHHH
Q 039015          617 CINGGANVVALL  628 (685)
Q Consensus       617 ~~~~~~~~~~~l  628 (685)
                      ....++.-+..+
T Consensus       241 ~~~a~~~~R~~~  252 (713)
T KOG2999|consen  241 FRKAPDDKRFEM  252 (713)
T ss_pred             HhhCChHHHHHH
Confidence            876655443333

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=94.94  E-value=0.5  Score=53.82  Aligned_cols=215  Identities=19%  Similarity=0.175  Sum_probs=135.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCc---hhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchh
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIF---NRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSK  455 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~---~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k  455 (685)
                      ..++.|...|++..+.++.+.+..+..+|...++   .|+|+.-.   =-|+.+|.+.+.+++.+|+..+..++.     
T Consensus       883 dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIc---feLlelLkahkK~iRRaa~nTfG~Iak-----  954 (1172)
T KOG0213|consen  883 DLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRIC---FELLELLKAHKKEIRRAAVNTFGYIAK-----  954 (1172)
T ss_pred             hhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhHHHH-----
Confidence            4578888888888899999999999999987765   46665532   246778888899999999999887763     


Q ss_pred             HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC
Q 039015          456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH  535 (685)
Q Consensus       456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~  535 (685)
                          .-|--+.|..+|++= ..+.|.+-+.+-..++...+.+..+    .++|+|+.=-..+...++.-.+.+|.-+-.+
T Consensus       955 ----aIGPqdVLatLlnnL-kvqeRq~RvcTtvaIaIVaE~c~pF----tVLPalmneYrtPe~nVQnGVLkalsf~Fey 1025 (1172)
T KOG0213|consen  955 ----AIGPQDVLATLLNNL-KVQERQNRVCTTVAIAIVAETCGPF----TVLPALMNEYRTPEANVQNGVLKALSFMFEY 1025 (1172)
T ss_pred             ----hcCHHHHHHHHHhcc-hHHHHHhchhhhhhhhhhhhhcCch----hhhHHHHhhccCchhHHHHhHHHHHHHHHHH
Confidence                124445555555543 4455555444444444444444333    2466666655555666666667777666544


Q ss_pred             CCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhc------CCChhHHHHH
Q 039015          536 SGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDS------CTSRAGKEYC  609 (685)
Q Consensus       536 ~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~------~~s~~~~e~a  609 (685)
                      -.+-.+=.-.-+.|.|-..| .+.+..-+.-|+.++.+|+-+..|      .|....++.+|+-      .++|.+...-
T Consensus      1026 igemskdYiyav~PlleDAl-mDrD~vhRqta~~~I~Hl~Lg~~g------~g~eda~iHLLN~iWpNIle~sPhviqa~ 1098 (1172)
T KOG0213|consen 1026 IGEMSKDYIYAVTPLLEDAL-MDRDLVHRQTAMNVIKHLALGVPG------TGCEDALIHLLNLIWPNILETSPHVIQAF 1098 (1172)
T ss_pred             HHHHhhhHHHHhhHHHHHhh-ccccHHHHHHHHHHHHHHhcCCCC------cCcHHHHHHHHHHhhhhhcCCChHHHHHH
Confidence            33222212223567777777 667777778899999999876442      2334445554441      1267777666


Q ss_pred             HHHHHHHh
Q 039015          610 VSLLLALC  617 (685)
Q Consensus       610 ~~~L~~L~  617 (685)
                      ..++-.+.
T Consensus      1099 ~e~~eg~r 1106 (1172)
T KOG0213|consen 1099 DEAMEGLR 1106 (1172)
T ss_pred             HHHHHHHH
Confidence            65554444

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=94.93  E-value=0.35  Score=56.96  Aligned_cols=193  Identities=15%  Similarity=0.129  Sum_probs=137.1

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHH--HhcCCCCcHHH
Q 039015          464 LDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIF--GLLMHSGNHWR  541 (685)
Q Consensus       464 i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~--nLs~~~~n~~~  541 (685)
                      +|.++++|-+.   --|..|...|...-.-..-..-+.-.-|++|..++||++...+.+. .+..||  -|+.++..+..
T Consensus       474 LPiVLQVLLSQ---vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrp-iLVFIWAKILAvD~SCQ~d  549 (1387)
T KOG1517|consen  474 LPIVLQVLLSQ---VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRP-ILVFIWAKILAVDPSCQAD  549 (1387)
T ss_pred             cchHHHHHHHH---HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhh-hHHHHHHHHHhcCchhHHH
Confidence            34444554332   2344555555544443333444444469999999999997776664 444444  25677778888


Q ss_pred             HHhcCChHHHHHHhccCC--ChhHHHHHHHHHHHHhcC-hhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 039015          542 FLAAGAVPLLLNLLTSSD--SEELITDSLAVLATLAEK-LDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCI  618 (685)
Q Consensus       542 iv~~G~v~~Lv~lL~~~~--~~~~~~~al~~L~~La~~-~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~  618 (685)
                      +++.++-...++.|..+.  +++-+..|+-+|+.++.+ +-|+.+.++.+-+...++.|.+++.+-.+.-++-+|..|=.
T Consensus       550 LvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~  629 (1387)
T KOG1517|consen  550 LVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWE  629 (1387)
T ss_pred             HHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhh
Confidence            999999888898884322  346667788888888775 77888888877788778888875357888888888888887


Q ss_pred             cCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 039015          619 NGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHE  662 (685)
Q Consensus       619 ~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~  662 (685)
                      +.+..  +-.....++.+.|+.++.+.-+.++..|.-.|..|-.
T Consensus       630 d~~~A--rw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~  671 (1387)
T KOG1517|consen  630 DYDEA--RWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLS  671 (1387)
T ss_pred             hcchh--hhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhc
Confidence            75443  3333336889999999999999999999988888765

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.86  E-value=0.034  Score=57.24  Aligned_cols=48  Identities=17%  Similarity=0.167  Sum_probs=41.8

Q ss_pred             CCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015          278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQ  326 (685)
Q Consensus       278 ~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~  326 (685)
                      .++-.||||.---...|+.||||.-|..||.+++-. ...|-.|+..+.
T Consensus       420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~  467 (489)
T KOG4692|consen  420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVI  467 (489)
T ss_pred             cccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEecceee
Confidence            467899999988888999999999999999999987 678888876554

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=94.81  E-value=1.5  Score=46.81  Aligned_cols=220  Identities=17%  Similarity=0.145  Sum_probs=158.5

Q ss_pred             HHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcc-hhH-----HHHh--cCcHHHHHHHhcCCCCHHHHHHHHHHH
Q 039015          416 CLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCK-SKS-----MVVE--SGGLDFIVDMVKKGLKVEARQHAAATL  487 (685)
Q Consensus       416 ~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~-~k~-----~i~~--~g~i~~Lv~lL~~~~~~e~~~~Aa~~L  487 (685)
                      .+...|.++.|+..|..-+-+.+..++.+..++-.... ++.     .+..  ...+..|+.--.   +++.-..+...|
T Consensus        71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~g~ml  147 (335)
T PF08569_consen   71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNCGDML  147 (335)
T ss_dssp             HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchHHHHH
Confidence            45567999999999999999999999999999976653 232     2221  233333333332   567888899999


Q ss_pred             HHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC-CCCcHHHHHhcC---ChHHHHHHhccCCChhH
Q 039015          488 FYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM-HSGNHWRFLAAG---AVPLLLNLLTSSDSEEL  563 (685)
Q Consensus       488 ~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~~G---~v~~Lv~lL~~~~~~~~  563 (685)
                      .....++.....|-. ...+..+.+.++.++-++-.+|..++.-|-. +...........   .+.....+| .+++=-.
T Consensus       148 Rec~k~e~l~~~iL~-~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll-~s~NYvt  225 (335)
T PF08569_consen  148 RECIKHESLAKIILY-SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLL-ESSNYVT  225 (335)
T ss_dssp             HHHTTSHHHHHHHHT-SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHC-T-SSHHH
T ss_pred             HHHHhhHHHHHHHhC-cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc-cCCCeEe
Confidence            999999887888877 7888899999999999999999999988654 444555555543   355667777 5667778


Q ss_pred             HHHHHHHHHHHhcChhcHHHH---HhcCC-hHHHHHHhhcCCChhHHHHHHHHHHHHhccC--cHHHHHHHHhcCCcHHH
Q 039015          564 ITDSLAVLATLAEKLDGTIAI---LHHGA-LDMIMKILDSCTSRAGKEYCVSLLLALCING--GANVVALLVKSPSLMGS  637 (685)
Q Consensus       564 ~~~al~~L~~La~~~~~~~~i---~~~g~-v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~--~~~~~~~l~~~~g~i~~  637 (685)
                      +..++.+|..|-.++.+...+   +.... +..++.+|++. +..++-.|.-+.--...+.  ++.+...+.+ .  -..
T Consensus       226 krqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~-N--r~k  301 (335)
T PF08569_consen  226 KRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVANPNKPPPIVDILIK-N--REK  301 (335)
T ss_dssp             HHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS-BHHHHHHHHH-T--HHH
T ss_pred             ehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhCCCCChHHHHHHHH-H--HHH
Confidence            899999999999988887654   33333 88888899997 9999999999987777654  4667777776 3  566


Q ss_pred             HHHHHhc
Q 039015          638 LYSLLSQ  644 (685)
Q Consensus       638 L~~Ll~~  644 (685)
                      |+.++.+
T Consensus       302 Ll~fl~~  308 (335)
T PF08569_consen  302 LLRFLKD  308 (335)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            7777755

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=94.76  E-value=0.84  Score=49.65  Aligned_cols=126  Identities=17%  Similarity=0.283  Sum_probs=96.3

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHhcCchh----HHHHhhcCCCcHHHHHHHhccCC------H-HHHHHHHHHHHHhcCCC
Q 039015          468 VDMVKKGLKVEARQHAAATLFYIASIEE----YRKLIGENPEAIPALVDMVRDGT------D-RSKKNALVAIFGLLMHS  536 (685)
Q Consensus       468 v~lL~~~~~~e~~~~Aa~~L~~Ls~~~~----~~~~i~~~~g~i~~Lv~lL~~~~------~-~~~~~A~~aL~nLs~~~  536 (685)
                      ..+++.. +.+.+-.|.-.+..+..+++    +|..+.+ .=+++.+=++|..++      + -.+..++..|...|..+
T Consensus        17 ~~L~~~k-~D~e~fAaLllVTK~vK~~Di~a~~kk~vfe-AVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   17 LKLLKGK-RDEERFAALLLVTKFVKNDDIVALNKKLVFE-AVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             HHHhccc-ChHHHHHHHHHHHHHhcccchhhhhhhhHHH-HhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            3344444 67777777777777877664    5666777 666888999987532      2 34567888899999888


Q ss_pred             C--cHHHHHhcCChHHHHHHhccCCChh------HHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHh
Q 039015          537 G--NHWRFLAAGAVPLLLNLLTSSDSEE------LITDSLAVLATLAEKLDGTIAILHHGALDMIMKIL  597 (685)
Q Consensus       537 ~--n~~~iv~~G~v~~Lv~lL~~~~~~~------~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL  597 (685)
                      +  .+..+++.  ||.|..++....+++      +.+.+-.+|..+|+++.|...++..|+++.+.++-
T Consensus        95 ElAsh~~~v~~--IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y  161 (698)
T KOG2611|consen   95 ELASHEEMVSR--IPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMY  161 (698)
T ss_pred             hhccCHHHHHh--hhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHH
Confidence            7  66777765  999999996444444      88999999999999999999999999999998843

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.68  E-value=0.29  Score=47.94  Aligned_cols=122  Identities=15%  Similarity=0.134  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCcHHHHHhc----------------CChHHHHHHhcc-----CCChhHHHHHHHHHHHHhcC
Q 039015          519 DRSKKNALVAIFGLLMHSGNHWRFLAA----------------GAVPLLLNLLTS-----SDSEELITDSLAVLATLAEK  577 (685)
Q Consensus       519 ~~~~~~A~~aL~nLs~~~~n~~~iv~~----------------G~v~~Lv~lL~~-----~~~~~~~~~al~~L~~La~~  577 (685)
                      ......++..|.||+..++.+..+++.                .++..|+..+..     .....-.+....+|.|++..
T Consensus         9 ~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~   88 (192)
T PF04063_consen    9 SPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL   88 (192)
T ss_pred             cchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence            334456777888888877776655443                256777887744     12355668899999999999


Q ss_pred             hhcHHHHHhcC--C--hHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhc--CCcHHHHHHHHh
Q 039015          578 LDGTIAILHHG--A--LDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKS--PSLMGSLYSLLS  643 (685)
Q Consensus       578 ~~~~~~i~~~g--~--v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~--~g~i~~L~~Ll~  643 (685)
                      ++||..+++..  .  +..|+.++.+. |..-+.-++++|.|+|...+  ....+...  .+++|.|+.-+.
T Consensus        89 ~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~--~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   89 PEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTD--SHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             HHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHh--HHHHhcCchhhhhHHHHHhhcc
Confidence            99999997765  2  56677777776 88888899999999998843  33555542  367777777776

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=94.68  E-value=0.022  Score=57.57  Aligned_cols=49  Identities=20%  Similarity=0.412  Sum_probs=39.3

Q ss_pred             cCcCcc-ccCCCcee----ccCcccccHHHHHHHHHcCCCCCCCCCccccCCCC
Q 039015          282 TCPISL-EIMKDPVT----LSTGHTYDRASILKWFRAGNSTCPKTGERLQSKEL  330 (685)
Q Consensus       282 ~CpIc~-~~m~dPv~----~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l  330 (685)
                      .||+|. ..+..|-+    -+|||+.|.+|+...|..|...||-|+..+....+
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf   55 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF   55 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence            589987 45556632    28999999999999999999999999888765433

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=94.65  E-value=3.1  Score=49.39  Aligned_cols=241  Identities=17%  Similarity=0.155  Sum_probs=143.0

Q ss_pred             HHHhhCCHHHHHHhhcC-----CCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhc----CCCC----HHHHHH
Q 039015          416 CLVEVGCIPSLLKLLSS-----KDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVK----KGLK----VEARQH  482 (685)
Q Consensus       416 ~i~~~G~ip~Lv~lL~s-----~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~----~~~~----~e~~~~  482 (685)
                      .+.+.|++..|+.+|.+     .+.......+.+|...++-..||..+.+.|+++.|++.|.    .+ .    .+.-+.
T Consensus       112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~-~~~~~~~i~E~  190 (802)
T PF13764_consen  112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQAN-QNSSQAEIAEQ  190 (802)
T ss_pred             HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCc-cccccchHHHH
Confidence            35668999999999976     3456667777888888888999999999999999999985    22 2    445555


Q ss_pred             HHHHHHHhcCch---hHHHHhh--c-------CCCcHHHHHHHhccC----CHHHHHHHHHHHHHhcCCCCcHHHHHhcC
Q 039015          483 AAATLFYIASIE---EYRKLIG--E-------NPEAIPALVDMVRDG----TDRSKKNALVAIFGLLMHSGNHWRFLAAG  546 (685)
Q Consensus       483 Aa~~L~~Ls~~~---~~~~~i~--~-------~~g~i~~Lv~lL~~~----~~~~~~~A~~aL~nLs~~~~n~~~iv~~G  546 (685)
                      ...++-.|....   .......  .       ...-+..|++.+.++    ++......+..|-+|+........++-.-
T Consensus       191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~  270 (802)
T PF13764_consen  191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH  270 (802)
T ss_pred             HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH
Confidence            555554443222   1111111  1       112366777766543    46777778888888887766554332111


Q ss_pred             ChHHHHHHhc--cCCChhHHHHHHHHHHHHhc----Ch---hcHHHHHhcCChHHHHHHhhcC-------CChhHHH---
Q 039015          547 AVPLLLNLLT--SSDSEELITDSLAVLATLAE----KL---DGTIAILHHGALDMIMKILDSC-------TSRAGKE---  607 (685)
Q Consensus       547 ~v~~Lv~lL~--~~~~~~~~~~al~~L~~La~----~~---~~~~~i~~~g~v~~Lv~lL~~~-------~s~~~~e---  607 (685)
                       +.+.+++=.  ....++- ..-+..++.++.    +.   .-+..|++.|.+...+..|...       .++++++   
T Consensus       271 -F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~  348 (802)
T PF13764_consen  271 -FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLS  348 (802)
T ss_pred             -HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence             111112110  0111110 122444444433    33   3466789999898888854422       1455555   


Q ss_pred             -----HHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcC-ChHHHHHHHHHHHHHHH
Q 039015          608 -----YCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQG-SSRASKKASALIRILHE  662 (685)
Q Consensus       608 -----~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g-~~~~k~~A~~lL~~l~~  662 (685)
                           .++.+|..||.+.  ...+.+.. .++++.|..|=+.. +.++-..|..+|..|..
T Consensus       349 ~psLp~iL~lL~GLa~gh--~~tQ~~~~-~~~l~~lH~LEqvss~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  349 RPSLPYILRLLRGLARGH--EPTQLLIA-EQLLPLLHRLEQVSSEEHIGSLAENLLEALAE  406 (802)
T ss_pred             CCcHHHHHHHHHHHHhcC--HHHHHHHH-hhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence                 5888999999874  32334443 55677777776555 34455566666666655

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.62  E-value=0.014  Score=66.97  Aligned_cols=51  Identities=20%  Similarity=0.526  Sum_probs=39.8

Q ss_pred             CCCCCccCcCccccCC--C---ceec--cCcccccHHHHHHHHHc-CCCCCCCCCcccc
Q 039015          276 LTPDDFTCPISLEIMK--D---PVTL--STGHTYDRASILKWFRA-GNSTCPKTGERLQ  326 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~--d---Pv~~--~cghtfcr~ci~~~~~~-~~~~CP~c~~~l~  326 (685)
                      .+...-.|+||..++.  |   |--.  .|.|.|...|+.+||.. +..+||.||..++
T Consensus      1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            4566678999998876  3   2222  48899999999999985 5779999997654

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=94.54  E-value=0.59  Score=52.22  Aligned_cols=147  Identities=17%  Similarity=0.226  Sum_probs=99.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHhhccccCcch---hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHH
Q 039015          423 IPSLLKLLSSKDSSTQENAIAALLNLSKHCKS---KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKL  499 (685)
Q Consensus       423 ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~---k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~  499 (685)
                      |..++.+|.++.+.++..|+.....|+.--.+   -+.+...|.  .|.+-|... .+|+......+++.+......+..
T Consensus       606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~-ypEvLgsil~Ai~~I~sv~~~~~m  682 (975)
T COG5181         606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGED-YPEVLGSILKAICSIYSVHRFRSM  682 (975)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcc-cHHHHHHHHHHHHHHhhhhccccc
Confidence            55666788899999999999888877644332   222223333  245566655 788888777777777655544432


Q ss_pred             hhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc----HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHh
Q 039015          500 IGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGN----HWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLA  575 (685)
Q Consensus       500 i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n----~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La  575 (685)
                      ---..|.+|.|..+|++....+..+.+..+..+|.+...    +..|.   +---|+++| .+.+.+++..|...+..++
T Consensus       683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~L-ks~nKeiRR~A~~tfG~Is  758 (975)
T COG5181         683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSL-KSWNKEIRRNATETFGCIS  758 (975)
T ss_pred             CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHH-HHhhHHHHHhhhhhhhhHH
Confidence            222368999999999998888989998888888866543    33332   222367777 4566778888777777665


Q ss_pred             c
Q 039015          576 E  576 (685)
Q Consensus       576 ~  576 (685)
                      .
T Consensus       759 ~  759 (975)
T COG5181         759 R  759 (975)
T ss_pred             h
Confidence            4

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=94.50  E-value=3.3  Score=45.27  Aligned_cols=127  Identities=17%  Similarity=0.265  Sum_probs=97.1

Q ss_pred             HHHhhcCCCHHHHHHHHHHhhccccCc----chhHHHHhcCcHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCchh
Q 039015          426 LLKLLSSKDSSTQENAIAALLNLSKHC----KSKSMVVESGGLDFIVDMVKKGL------KVEARQHAAATLFYIASIEE  495 (685)
Q Consensus       426 Lv~lL~s~~~~~~~~A~~aL~nLs~~~----~~k~~i~~~g~i~~Lv~lL~~~~------~~e~~~~Aa~~L~~Ls~~~~  495 (685)
                      +..++...+.+-+-.|+-....+.+++    .||..+.++-+.+.+=++|.+++      +.-.+..+.++|...+..++
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE   95 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE   95 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence            456666667777777777777777665    35888999999999999997542      33457788888999998886


Q ss_pred             HH--HHhhcCCCcHHHHHHHhccC-CHH------HHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHh
Q 039015          496 YR--KLIGENPEAIPALVDMVRDG-TDR------SKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLL  555 (685)
Q Consensus       496 ~~--~~i~~~~g~i~~Lv~lL~~~-~~~------~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL  555 (685)
                      ..  +.+..   .||.|...+..+ +++      ...++-.+|+..+..+.....++..|+++.+-++-
T Consensus        96 lAsh~~~v~---~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y  161 (698)
T KOG2611|consen   96 LASHEEMVS---RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMY  161 (698)
T ss_pred             hccCHHHHH---hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHH
Confidence            42  33333   599999998653 333      56788999999999999999999999999999875

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=94.43  E-value=0.017  Score=60.33  Aligned_cols=47  Identities=23%  Similarity=0.375  Sum_probs=40.3

Q ss_pred             cCcCccccCCCceeccCcccccHHHHHHHHHc-CCCCCCCCCccccCC
Q 039015          282 TCPISLEIMKDPVTLSTGHTYDRASILKWFRA-GNSTCPKTGERLQSK  328 (685)
Q Consensus       282 ~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~-~~~~CP~c~~~l~~~  328 (685)
                      .|.||-+-=+|=-+=+|||-.|-.|+..|..+ +..+||.||..+.-+
T Consensus       371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt  418 (563)
T KOG1785|consen  371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT  418 (563)
T ss_pred             HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence            69999998888667799999999999999964 478999999887644

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.38  E-value=0.021  Score=45.61  Aligned_cols=51  Identities=27%  Similarity=0.466  Sum_probs=39.0

Q ss_pred             CCCCCccCcCccccCCC-ceec-cCcccccHHHHHHHHHc--CCCCCCCCCcccc
Q 039015          276 LTPDDFTCPISLEIMKD-PVTL-STGHTYDRASILKWFRA--GNSTCPKTGERLQ  326 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~d-Pv~~-~cghtfcr~ci~~~~~~--~~~~CP~c~~~l~  326 (685)
                      ..+-+-.||-|.-.-.| |.+. -|.|.|...||.+|+..  ....||.||+...
T Consensus        27 Rm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   27 RMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             ecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            45666778877766666 4444 79999999999999985  2468999998753

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=94.24  E-value=0.9  Score=48.52  Aligned_cols=225  Identities=17%  Similarity=0.155  Sum_probs=157.1

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhh-HHHh--hCCHHHHHHhh-cC-CCHHHHHHHHHHhhccccCcc
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRS-CLVE--VGCIPSLLKLL-SS-KDSSTQENAIAALLNLSKHCK  453 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~-~i~~--~G~ip~Lv~lL-~s-~~~~~~~~A~~aL~nLs~~~~  453 (685)
                      +.+..|+..|..-+-+.+..++....++.+.....+. ..++  ..-.|-++..| .. +++++...+-.+|.....++.
T Consensus        76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~  155 (335)
T PF08569_consen   76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHES  155 (335)
T ss_dssp             THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHH
T ss_pred             CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHH
Confidence            3467778888888899999988888888877666654 2221  12223333323 22 578888899999999999998


Q ss_pred             hhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCchhHHHHh-hcC-CCcHHHHHHHhccCCHHHHHHHHHHHH
Q 039015          454 SKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYI-ASIEEYRKLI-GEN-PEAIPALVDMVRDGTDRSKKNALVAIF  530 (685)
Q Consensus       454 ~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~L-s~~~~~~~~i-~~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~  530 (685)
                      -...|.....+..+......+ +-++...|..++..| ..+....... ..+ ...+.....+|.+++.-++..++..|.
T Consensus       156 l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~  234 (335)
T PF08569_consen  156 LAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLG  234 (335)
T ss_dssp             HHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHH
Confidence            888888888999999999988 999999999999885 4444443333 221 146777888999999999999999999


Q ss_pred             HhcCCCCcHHHHHhc----CChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHH
Q 039015          531 GLLMHSGNHWRFLAA----GAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGK  606 (685)
Q Consensus       531 nLs~~~~n~~~iv~~----G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~  606 (685)
                      .|-.+..|...|...    .-+..++.+| .+.+..++-+|..++-....+|..         -+.+..+|...     +
T Consensus       235 ellldr~n~~vm~~yi~~~~nLkl~M~lL-~d~sk~Iq~eAFhvFKvFVANp~K---------~~~I~~iL~~N-----r  299 (335)
T PF08569_consen  235 ELLLDRSNFNVMTRYISSPENLKLMMNLL-RDKSKNIQFEAFHVFKVFVANPNK---------PPPIVDILIKN-----R  299 (335)
T ss_dssp             HHHHSGGGHHHHHHHTT-HHHHHHHHHHT-T-S-HHHHHHHHHHHHHHHH-SS----------BHHHHHHHHHT-----H
T ss_pred             HHHHchhHHHHHHHHHCCHHHHHHHHHHh-cCcchhhhHHHHHHHHHHHhCCCC---------ChHHHHHHHHH-----H
Confidence            999999987766542    3466678888 678889999999998877665432         34455555432     6


Q ss_pred             HHHHHHHHHHhcc
Q 039015          607 EYCVSLLLALCIN  619 (685)
Q Consensus       607 e~a~~~L~~L~~~  619 (685)
                      +.-+..|..+-..
T Consensus       300 ~kLl~fl~~f~~~  312 (335)
T PF08569_consen  300 EKLLRFLKDFHTD  312 (335)
T ss_dssp             HHHHHHHHTTTTT
T ss_pred             HHHHHHHHhCCCC
Confidence            6666666665544

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.19  E-value=0.028  Score=58.77  Aligned_cols=50  Identities=22%  Similarity=0.470  Sum_probs=35.2

Q ss_pred             CCccCcCccccCCCce----eccCcccccHHHHHHHHHcC--CCCCCCCCccccCC
Q 039015          279 DDFTCPISLEIMKDPV----TLSTGHTYDRASILKWFRAG--NSTCPKTGERLQSK  328 (685)
Q Consensus       279 ~~~~CpIc~~~m~dPv----~~~cghtfcr~ci~~~~~~~--~~~CP~c~~~l~~~  328 (685)
                      -.-.|.||.+..-.--    +-.|||+|.-.|+..||+..  +++||.|+-.+...
T Consensus         3 i~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r   58 (465)
T KOG0827|consen    3 IMAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQER   58 (465)
T ss_pred             ccceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccce
Confidence            3457999944433211    22699999999999999963  35899998555543

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=94.15  E-value=0.011  Score=66.66  Aligned_cols=49  Identities=22%  Similarity=0.430  Sum_probs=42.0

Q ss_pred             CCCccCcCccccCCCceec---cCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015          278 PDDFTCPISLEIMKDPVTL---STGHTYDRASILKWFRAGNSTCPKTGERLQS  327 (685)
Q Consensus       278 ~~~~~CpIc~~~m~dPv~~---~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~  327 (685)
                      ...-.||+|..-+.|-.+.   .|+|.||..||..|-.- ..+||.|+..+..
T Consensus       121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~  172 (1134)
T KOG0825|consen  121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGE  172 (1134)
T ss_pred             hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhe
Confidence            4567899999999987654   79999999999999886 7799999987754

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=94.12  E-value=2  Score=44.55  Aligned_cols=223  Identities=13%  Similarity=0.072  Sum_probs=145.5

Q ss_pred             CHHHHHHHHHHHHHHhhcCCchhhHHH-hhCCHHHHHHhhcC--CCHHHHHHHHHHhhccccCcchhHHHHh-cCcHHHH
Q 039015          392 TSEEKNKVAYEVRLLTKSSIFNRSCLV-EVGCIPSLLKLLSS--KDSSTQENAIAALLNLSKHCKSKSMVVE-SGGLDFI  467 (685)
Q Consensus       392 ~~~~~~~a~~~L~~La~~~~~~r~~i~-~~G~ip~Lv~lL~s--~~~~~~~~A~~aL~nLs~~~~~k~~i~~-~g~i~~L  467 (685)
                      ++-.+.-|+.++.++.. .+++|..+- +.-.-..++.+|+.  ++..+|-+.+-++..|+.++.....|-+ ...+.-+
T Consensus       162 ~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl  240 (432)
T COG5231         162 DFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL  240 (432)
T ss_pred             HHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            44467778899999986 677777543 44556677788876  6788999999999999988876644443 4567777


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHhcCch--hHHHHhhcCCCcHHHHHHHhccC---CHHHHHHHHH------------HHH
Q 039015          468 VDMVKKGLKVEARQHAAATLFYIASIE--EYRKLIGENPEAIPALVDMVRDG---TDRSKKNALV------------AIF  530 (685)
Q Consensus       468 v~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~A~~------------aL~  530 (685)
                      +.+.+......+...+++++.+++...  .+-...+. .|-+..-|++|..+   +.+.+.+--.            +.+
T Consensus       241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll-l~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~f  319 (432)
T COG5231         241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLL-LNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIF  319 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHh-hcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            888775534566678888999887622  33334444 44455666666432   2222221100            011


Q ss_pred             -----Hh-----cCC---------CCcHHHHHhc--CChHHHHHHhccCCCh-hHHHHHHHHHHHHhcChhcHHHHHhcC
Q 039015          531 -----GL-----LMH---------SGNHWRFLAA--GAVPLLLNLLTSSDSE-ELITDSLAVLATLAEKLDGTIAILHHG  588 (685)
Q Consensus       531 -----nL-----s~~---------~~n~~~iv~~--G~v~~Lv~lL~~~~~~-~~~~~al~~L~~La~~~~~~~~i~~~g  588 (685)
                           .|     +-.         ..|-..+.+.  .++..|.++|+...+. -++-++-.+...+-..|+++..+...|
T Consensus       320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg  399 (432)
T COG5231         320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYG  399 (432)
T ss_pred             HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhh
Confidence                 11     100         1245555553  3788899999644333 333444444445555799999999999


Q ss_pred             ChHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 039015          589 ALDMIMKILDSCTSRAGKEYCVSLLLALC  617 (685)
Q Consensus       589 ~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~  617 (685)
                      +=..+++++.+. +++++-.|+.++..+-
T Consensus       400 ~k~~im~L~nh~-d~~VkfeAl~a~q~~i  427 (432)
T COG5231         400 VKEIIMNLINHD-DDDVKFEALQALQTCI  427 (432)
T ss_pred             hHHHHHHHhcCC-CchhhHHHHHHHHHHH
Confidence            999999999988 9999999999986654

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=94.05  E-value=0.13  Score=45.91  Aligned_cols=70  Identities=13%  Similarity=0.175  Sum_probs=59.6

Q ss_pred             HHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhcc
Q 039015          379 LLANFISDRL-LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNL  448 (685)
Q Consensus       379 ~~i~~Lv~~L-~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nL  448 (685)
                      ..+..|++.| .+.++....-|+.-|..+++..+..|..+-+.|+-..++.++.++|++++..|+.++..+
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl  113 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL  113 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            3688899999 555677777889999999999999999998899999999999999999999999998655

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.02  E-value=0.71  Score=53.05  Aligned_cols=178  Identities=16%  Similarity=0.150  Sum_probs=122.4

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHH-HHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015          380 LANFISDRLLEGTSEEKNKVAYE-VRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV  458 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~-L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i  458 (685)
                      .+..+.+.|.+...+.|..|++. |..+.- ..+      -.+..|.++....+.|.+.....---|.|-+......   
T Consensus        14 ei~elks~l~s~~~~kr~~a~kkvIa~Mt~-G~D------vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~---   83 (734)
T KOG1061|consen   14 EIPELKSQLNSQSKEKRKDAVKKVIAYMTV-GKD------VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL---   83 (734)
T ss_pred             hchHHHHHhhhhhhhhHHHHHHHHHhcCcc-Ccc------hHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH---
Confidence            35555566655545556655543 333332 111      1356777888888888776666655555555443332   


Q ss_pred             HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 039015          459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGN  538 (685)
Q Consensus       459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n  538 (685)
                       ..+++..++.=.... ++..|..|..++..+-..    ..+.   -.+.+|...++++++-+++.|+....++  +..+
T Consensus        84 -a~~avnt~~kD~~d~-np~iR~lAlrtm~~l~v~----~i~e---y~~~Pl~~~l~d~~~yvRktaa~~vakl--~~~~  152 (734)
T KOG1061|consen   84 -AILAVNTFLKDCEDP-NPLIRALALRTMGCLRVD----KITE---YLCDPLLKCLKDDDPYVRKTAAVCVAKL--FDID  152 (734)
T ss_pred             -HHhhhhhhhccCCCC-CHHHHHHHhhceeeEeeh----HHHH---HHHHHHHHhccCCChhHHHHHHHHHHHh--hcCC
Confidence             234566666666666 889999998887776432    2222   2577899999999999999888887766  6677


Q ss_pred             HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChh
Q 039015          539 HWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLD  579 (685)
Q Consensus       539 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~  579 (685)
                      .....++|.++.|-.++ .+.++.++..|+++|..+.....
T Consensus       153 ~~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~~~  192 (734)
T KOG1061|consen  153 PDLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHESHP  192 (734)
T ss_pred             hhhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHhCC
Confidence            77888999999999999 68889999999999999977543

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=93.72  E-value=0.25  Score=40.12  Aligned_cols=67  Identities=16%  Similarity=0.057  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcC
Q 039015          522 KKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHG  588 (685)
Q Consensus       522 ~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g  588 (685)
                      .|.|++|+.|++..+.....+.+.++|+.++++...++...++--|.-+|..++...+|.+.+.+.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence            5789999999999888887777889999999999777888999999999999999999998887654

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.68  E-value=9.3  Score=44.48  Aligned_cols=250  Identities=15%  Similarity=0.182  Sum_probs=145.4

Q ss_pred             hhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc-c
Q 039015          375 GAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-K  453 (685)
Q Consensus       375 ~~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~  453 (685)
                      +..+...+...++|+..++-++.+|+-+...+-...++.-+.|     ++.-.++|.+.+..+...++..+..+.... +
T Consensus       138 EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~  212 (866)
T KOG1062|consen  138 EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIAFRKLLCEKHHGVLIAGLHLITELCKISPD  212 (866)
T ss_pred             HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHH
Confidence            3444556666777888999999999988877766566544433     445566777777777777777766665442 2


Q ss_pred             hhHHHHhcCcHHHHHHHhcC----C----------CCHHHHHHHHHHHHHhcCch-hHHHHhhc-------------CCC
Q 039015          454 SKSMVVESGGLDFIVDMVKK----G----------LKVEARQHAAATLFYIASIE-EYRKLIGE-------------NPE  505 (685)
Q Consensus       454 ~k~~i~~~g~i~~Lv~lL~~----~----------~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~-------------~~g  505 (685)
                      +-..+-+  .++.+|..|+.    +          .++-.+.....+|.-|-.++ +..+.+..             +.|
T Consensus       213 ~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~G  290 (866)
T KOG1062|consen  213 ALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAG  290 (866)
T ss_pred             HHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccch
Confidence            3222222  45555555531    1          14556666666666665554 22222211             011


Q ss_pred             ------cHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHH------------------HHHHhccCCCh
Q 039015          506 ------AIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPL------------------LLNLLTSSDSE  561 (685)
Q Consensus       506 ------~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~------------------Lv~lL~~~~~~  561 (685)
                            +|..++.+.  .+...+..|+.+|.....+.+|-.+-+   ++..                  +++.| .+++.
T Consensus       291 nAILYE~V~TI~~I~--~~~~LrvlainiLgkFL~n~d~NirYv---aLn~L~r~V~~d~~avqrHr~tIleCL-~DpD~  364 (866)
T KOG1062|consen  291 NAILYECVRTIMDIR--SNSGLRVLAINILGKFLLNRDNNIRYV---ALNMLLRVVQQDPTAVQRHRSTILECL-KDPDV  364 (866)
T ss_pred             hHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHhcCCccceeee---ehhhHHhhhcCCcHHHHHHHHHHHHHh-cCCcH
Confidence                  233333332  345567778888887776666433222   2333                  44455 45667


Q ss_pred             hHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcH-H------HHHHHHhcCC-
Q 039015          562 ELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGA-N------VVALLVKSPS-  633 (685)
Q Consensus       562 ~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~-~------~~~~l~~~~g-  633 (685)
                      .++..|+.++..|......+..      +..|+.+|... ++..+...++-+..++..-.+ +      ...++ ..+| 
T Consensus       365 SIkrralELs~~lvn~~Nv~~m------v~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl-~~aG~  436 (866)
T KOG1062|consen  365 SIKRRALELSYALVNESNVRVM------VKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRWHIDTMLKVL-KTAGD  436 (866)
T ss_pred             HHHHHHHHHHHHHhccccHHHH------HHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHH-Hhccc
Confidence            7777777777777654333322      34577788877 899999999888888864322 1      11122 2233 


Q ss_pred             -----cHHHHHHHHhcC
Q 039015          634 -----LMGSLYSLLSQG  645 (685)
Q Consensus       634 -----~i~~L~~Ll~~g  645 (685)
                           ++..|+.|+.++
T Consensus       437 ~V~~dv~~nll~LIa~~  453 (866)
T KOG1062|consen  437 FVNDDVVNNLLRLIANA  453 (866)
T ss_pred             ccchhhHHHHHHHHhcC
Confidence                 677788888777

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.66  E-value=0.073  Score=39.89  Aligned_cols=44  Identities=27%  Similarity=0.509  Sum_probs=24.4

Q ss_pred             ccCcCccccCCCceec-cCccc--ccHHHHHHHH-HcCCCCCCCCCcc
Q 039015          281 FTCPISLEIMKDPVTL-STGHT--YDRASILKWF-RAGNSTCPKTGER  324 (685)
Q Consensus       281 ~~CpIc~~~m~dPv~~-~cght--fcr~ci~~~~-~~~~~~CP~c~~~  324 (685)
                      +.|||+...|.-|+.- .|.|.  |+...+.... ..+...||.|+++
T Consensus         3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred             eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence            7899999999999976 79986  6664433333 3456789999763

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>KOG2979 consensus Protein involved in DNA repair [General function prediction only]

Probab=93.62  E-value=0.056  Score=53.91  Aligned_cols=47  Identities=32%  Similarity=0.432  Sum_probs=38.4

Q ss_pred             CCCccCcCccccCCCceec-cCcccccHHHHHHHHHc-CCCCCCCCCcc
Q 039015          278 PDDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRA-GNSTCPKTGER  324 (685)
Q Consensus       278 ~~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~-~~~~CP~c~~~  324 (685)
                      .-+++|||+......|++. .|||.|+|..|..++.. ....||.-+..
T Consensus       174 ~fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~  222 (262)
T KOG2979|consen  174 VFSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE  222 (262)
T ss_pred             hhcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence            3458999999999999987 79999999999998864 24579984443

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.49  E-value=0.049  Score=53.57  Aligned_cols=38  Identities=29%  Similarity=0.483  Sum_probs=33.4

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHc
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRA  313 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~  313 (685)
                      .+.+.-+|.+|++..+|||+.+-||.|||.||.+++-.
T Consensus        39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila   76 (303)
T KOG3039|consen   39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA   76 (303)
T ss_pred             ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence            45556678999999999999999999999999998864

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.40  E-value=0.046  Score=57.11  Aligned_cols=49  Identities=18%  Similarity=0.269  Sum_probs=40.4

Q ss_pred             CCCccCcCccccCCCceeccCccc-ccHHHHHHHHHcCCCCCCCCCccccC
Q 039015          278 PDDFTCPISLEIMKDPVTLSTGHT-YDRASILKWFRAGNSTCPKTGERLQS  327 (685)
Q Consensus       278 ~~~~~CpIc~~~m~dPv~~~cght-fcr~ci~~~~~~~~~~CP~c~~~l~~  327 (685)
                      ...-.|-||+.--+|=+++||-|. .|..|-+... -.+..||+||+++..
T Consensus       288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPIEE  337 (349)
T ss_pred             cCCCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCccccchHh
Confidence            335789999999999999999997 5999976544 447889999998753

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=93.34  E-value=0.057  Score=39.76  Aligned_cols=43  Identities=21%  Similarity=0.336  Sum_probs=22.0

Q ss_pred             CcCccccCC--Cceec--cCcccccHHHHHHHHHcCCCCCCCCCccc
Q 039015          283 CPISLEIMK--DPVTL--STGHTYDRASILKWFRAGNSTCPKTGERL  325 (685)
Q Consensus       283 CpIc~~~m~--dPv~~--~cghtfcr~ci~~~~~~~~~~CP~c~~~l  325 (685)
                      ||+|.+.|.  |--+.  +||+..|+.|..+-...+...||-|+++.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            789988882  11123  69999999998888776688999998764

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=93.13  E-value=0.045  Score=41.25  Aligned_cols=46  Identities=15%  Similarity=0.184  Sum_probs=36.6

Q ss_pred             CccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCC
Q 039015          280 DFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSK  328 (685)
Q Consensus       280 ~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~  328 (685)
                      +..|-.|...-...++++|||..|+.|..-+   .-..||.|+.++...
T Consensus         7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~   52 (55)
T PF14447_consen    7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFD   52 (55)
T ss_pred             ceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCC
Confidence            4567778888888899999999999996543   356799999988654

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=93.11  E-value=1.3  Score=51.99  Aligned_cols=248  Identities=14%  Similarity=0.140  Sum_probs=129.1

Q ss_pred             hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHH-hhcCCCHHHHHHHHH---HhhccccCc
Q 039015          377 MKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLK-LLSSKDSSTQENAIA---ALLNLSKHC  452 (685)
Q Consensus       377 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~-lL~s~~~~~~~~A~~---aL~nLs~~~  452 (685)
                      ....+..|++.|+..+.++|..|+++|.-|+..-.+.+-.-    .+..|.. +++..+..--..++.   .+.|+.-  
T Consensus        45 e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~----~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P--  118 (1233)
T KOG1824|consen   45 ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLET----IVENLCSNMLSGKEQLRDISSIGLKTVIANLPP--  118 (1233)
T ss_pred             hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHH----HHHHHhhhhccchhhhccHHHHHHHHHHhcCCC--
Confidence            34568899999999999999999999999986554444211    1223332 233222111112222   2344432  


Q ss_pred             chhHHHHhcCcHHHHHHHhcCC-----CCHHHHHHHHHHHHHh-cCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHH
Q 039015          453 KSKSMVVESGGLDFIVDMVKKG-----LKVEARQHAAATLFYI-ASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNAL  526 (685)
Q Consensus       453 ~~k~~i~~~g~i~~Lv~lL~~~-----~~~e~~~~Aa~~L~~L-s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~  526 (685)
                       .-.......+.+.+...|..+     ....++..+...+..+ +...+.-..+ . .+....++.-+.+.-..+++.|+
T Consensus       119 -~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~f-h-~~il~~l~~ql~s~R~aVrKkai  195 (1233)
T KOG1824|consen  119 -SSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNF-H-LSILKCLLPQLQSPRLAVRKKAI  195 (1233)
T ss_pred             -ccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcch-H-HHHHHHHhhcccChHHHHHHHHH
Confidence             222223344445555544432     1122344444433322 1111111111 1 34455555555565577899999


Q ss_pred             HHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhc-C-ChHHHHHHh---hcCC
Q 039015          527 VAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHH-G-ALDMIMKIL---DSCT  601 (685)
Q Consensus       527 ~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~-g-~v~~Lv~lL---~~~~  601 (685)
                      .+|..|+....+-   .=.+++..|++=|.....+....--..+|..++....  ..+..+ + .+|.+.+..   ... 
T Consensus       196 ~~l~~la~~~~~~---ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag--~r~~~h~~~ivp~v~~y~~~~e~~-  269 (1233)
T KOG1824|consen  196 TALGHLASSCNRD---LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAG--HRFGSHLDKIVPLVADYCNKIEED-  269 (1233)
T ss_pred             HHHHHHHHhcCHH---HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhc--chhhcccchhhHHHHHHhcccccC-
Confidence            9999998765432   1123456667666433344333333333443333211  112222 2 267777766   445 


Q ss_pred             ChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHH
Q 039015          602 SRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLL  642 (685)
Q Consensus       602 s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll  642 (685)
                      .++.+|.++.+|..+-...+.++....   +.++..+...+
T Consensus       270 dDELrE~~lQale~fl~rcp~ei~p~~---pei~~l~l~yi  307 (1233)
T KOG1824|consen  270 DDELREYCLQALESFLRRCPKEILPHV---PEIINLCLSYI  307 (1233)
T ss_pred             cHHHHHHHHHHHHHHHHhChhhhcccc---hHHHHHHHHHh
Confidence            789999999999988887655433222   23445555544

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.05  E-value=0.054  Score=56.64  Aligned_cols=47  Identities=23%  Similarity=0.334  Sum_probs=38.6

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQ  326 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~  326 (685)
                      ..+..-.|-||.+-..+.+.++|||+.|  |+.-...  ...||.|++.+.
T Consensus       301 ~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~  347 (355)
T KOG1571|consen  301 ELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIR  347 (355)
T ss_pred             ccCCCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHHH
Confidence            5667789999999999999999999988  7655433  566999998764

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.99  E-value=18  Score=41.60  Aligned_cols=213  Identities=15%  Similarity=0.160  Sum_probs=131.2

Q ss_pred             HHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCC
Q 039015          396 KNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGL  475 (685)
Q Consensus       396 ~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~  475 (685)
                      +...+.+.-+|+.+-+.....+..  ++..|-++|++....++-.|+..++.|+..+...+.+-..  .+.++..|+...
T Consensus       306 ~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkter  381 (938)
T KOG1077|consen  306 KNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTER  381 (938)
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhcccc
Confidence            444555555555545444555544  3667888888888889999999999998887777776666  889999999665


Q ss_pred             CHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC-CC-C-------------cHH
Q 039015          476 KVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM-HS-G-------------NHW  540 (685)
Q Consensus       476 ~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~-~-------------n~~  540 (685)
                      +..+|..|+..|+-++.....+ .|      +.-|+..|...+...++.-+.=..-|+. +. +             ...
T Consensus       382 DvSirrravDLLY~mcD~~Nak-~I------V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriag  454 (938)
T KOG1077|consen  382 DVSIRRRAVDLLYAMCDVSNAK-QI------VAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAG  454 (938)
T ss_pred             chHHHHHHHHHHHHHhchhhHH-HH------HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhc
Confidence            8999999999999997655444 33      3346666666665555543322222221 11 1             011


Q ss_pred             HHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCC-h----------------HHHHHHhhcC---
Q 039015          541 RFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGA-L----------------DMIMKILDSC---  600 (685)
Q Consensus       541 ~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~-v----------------~~Lv~lL~~~---  600 (685)
                      ..++.+++..++++.-  .+++++.-|+.-+.-.-..+..-+.++..|| |                ..+..++...   
T Consensus       455 d~vsdeVW~RvvQiVv--Nnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~  532 (938)
T KOG1077|consen  455 DYVSDEVWYRVVQIVV--NNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHL  532 (938)
T ss_pred             ccccHHHHHHhheeEe--cchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhcc
Confidence            2355567777787763  3566766666666555454555555555554 2                2222233321   


Q ss_pred             CChhHHHHHHHHHHHHhccCc
Q 039015          601 TSRAGKEYCVSLLLALCINGG  621 (685)
Q Consensus       601 ~s~~~~e~a~~~L~~L~~~~~  621 (685)
                      .++..+---+.....++...+
T Consensus       533 ~s~~tr~lLLtTyiKl~nl~P  553 (938)
T KOG1077|consen  533 CSPVTRALLLTTYIKLINLFP  553 (938)
T ss_pred             CChhHHHHHHHHHHHHHhhCh
Confidence            156666666666666766553

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.87  E-value=1.8  Score=49.92  Aligned_cols=167  Identities=17%  Similarity=0.158  Sum_probs=99.3

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcch-hH
Q 039015          378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS-KS  456 (685)
Q Consensus       378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~  456 (685)
                      +-....|.+.+.+.++.+|..|+-.+..+=   ..+.......|.++.|-.++.+.++.+..+|+.+|..+.....+ ..
T Consensus       120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~---~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~  196 (734)
T KOG1061|consen  120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLF---DIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNL  196 (734)
T ss_pred             HHHHHHHHHhccCCChhHHHHHHHHHHHhh---cCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCc
Confidence            345778888899999999998888877764   35677788899999999999999999999999999998765543 11


Q ss_pred             HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch--hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015          457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE--EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM  534 (685)
Q Consensus       457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  534 (685)
                      .-...-.+..++..|..- +.=   .-+.+|-.|+..-  +.++.    ...+..+...|++.+..+...+..++.++..
T Consensus       197 ~~l~~~~~~~lL~al~ec-~EW---~qi~IL~~l~~y~p~d~~ea----~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~  268 (734)
T KOG1061|consen  197 LELNPQLINKLLEALNEC-TEW---GQIFILDCLAEYVPKDSREA----EDICERLTPRLQHANSAVVLSAVKVILQLVK  268 (734)
T ss_pred             ccccHHHHHHHHHHHHHh-hhh---hHHHHHHHHHhcCCCCchhH----HHHHHHhhhhhccCCcceEeehHHHHHHHHH
Confidence            111112222222222211 111   1122333333211  11111    1234555556666666666666666666665


Q ss_pred             CCCcHHHHHhcCChHHHHHHh
Q 039015          535 HSGNHWRFLAAGAVPLLLNLL  555 (685)
Q Consensus       535 ~~~n~~~iv~~G~v~~Lv~lL  555 (685)
                      +........-...-++|+.++
T Consensus       269 ~~~~~~~~~~~K~~~pl~tll  289 (734)
T KOG1061|consen  269 YLKQVNELLFKKVAPPLVTLL  289 (734)
T ss_pred             HHHHHHHHHHHHhcccceeee
Confidence            544443444444555555555

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=92.83  E-value=0.068  Score=54.79  Aligned_cols=50  Identities=18%  Similarity=0.353  Sum_probs=36.4

Q ss_pred             CCccCcCccccCCC--ceec--cCcccccHHHHHHHHHcCCCCCCCCCccccCCC
Q 039015          279 DDFTCPISLEIMKD--PVTL--STGHTYDRASILKWFRAGNSTCPKTGERLQSKE  329 (685)
Q Consensus       279 ~~~~CpIc~~~m~d--Pv~~--~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~  329 (685)
                      +++ ||+|.+.|.-  --+.  +||...|+.|....-+.=+..||.||....+..
T Consensus        14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den   67 (480)
T COG5175          14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN   67 (480)
T ss_pred             ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence            345 9999999873  2222  689999999976554444678999998876553

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=92.83  E-value=0.028  Score=65.20  Aligned_cols=47  Identities=21%  Similarity=0.383  Sum_probs=40.1

Q ss_pred             ccCcCccccCCCceeccCcccccHHHHHHHHHcC-CCCCCCCCccccCC
Q 039015          281 FTCPISLEIMKDPVTLSTGHTYDRASILKWFRAG-NSTCPKTGERLQSK  328 (685)
Q Consensus       281 ~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~-~~~CP~c~~~l~~~  328 (685)
                      +.|++|.+ ..+|+++.|||.||+.|+...+... ...||.|+..+...
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~  502 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK  502 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence            99999999 8889999999999999999988753 33699998776544

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=92.73  E-value=18  Score=42.56  Aligned_cols=139  Identities=17%  Similarity=0.106  Sum_probs=104.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHh
Q 039015          381 ANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVE  460 (685)
Q Consensus       381 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~  460 (685)
                      .+.+++...+.|.+.++-.-..|...++.+++  .++.   ++..+.+=|.++|+.+|..|++.+..|=.      .=+-
T Consensus        57 f~dViK~~~trd~ElKrL~ylYl~~yak~~P~--~~lL---avNti~kDl~d~N~~iR~~AlR~ls~l~~------~el~  125 (757)
T COG5096          57 FPDVIKNVATRDVELKRLLYLYLERYAKLKPE--LALL---AVNTIQKDLQDPNEEIRGFALRTLSLLRV------KELL  125 (757)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHhccCHH--HHHH---HHHHHHhhccCCCHHHHHHHHHHHHhcCh------HHHH
Confidence            45556666677888888777778888876652  2222   36677788888999999999999876532      1122


Q ss_pred             cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015          461 SGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM  534 (685)
Q Consensus       461 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  534 (685)
                      ..+++++.+.+.++ ++.+|..|+-+++++-..+  +..+.+ .|.+..+..++.+.+|.+..+|+.+|+.+.-
T Consensus       126 ~~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld--~~l~~~-~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         126 GNIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLD--KDLYHE-LGLIDILKELVADSDPIVIANALASLAEIDP  195 (757)
T ss_pred             HHHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcC--Hhhhhc-ccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence            45688999999999 9999999999999986433  222333 6779999999999999999999999998843

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=92.70  E-value=0.93  Score=46.25  Aligned_cols=95  Identities=17%  Similarity=0.150  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhcc-ccCcchhHHHHhcCcHHHHHHHhc
Q 039015          395 EKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNL-SKHCKSKSMVVESGGLDFIVDMVK  472 (685)
Q Consensus       395 ~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nL-s~~~~~k~~i~~~g~i~~Lv~lL~  472 (685)
                      ....|+..|+-++--++..|..+....++..|+++|.. ..+.++..++.+|..+ ..++.|...+-+.+|+..++.+++
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk  186 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK  186 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence            34567788888888889999999999999999999954 6789999999888555 566688888889999999999998


Q ss_pred             CC-CCHHHHHHHHHHHHH
Q 039015          473 KG-LKVEARQHAAATLFY  489 (685)
Q Consensus       473 ~~-~~~e~~~~Aa~~L~~  489 (685)
                      +. .+.+++...+..|+.
T Consensus       187 ~~~~~~~~r~K~~EFL~f  204 (257)
T PF08045_consen  187 SKSTDRELRLKCIEFLYF  204 (257)
T ss_pred             cccccHHHhHHHHHHHHH
Confidence            65 356777777777753

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=92.64  E-value=2.3  Score=50.00  Aligned_cols=267  Identities=13%  Similarity=0.124  Sum_probs=144.1

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHH-HhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc-chh-HHHH
Q 039015          383 FISDRLLEGTSEEKNKVAYEVRL-LTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-KSK-SMVV  459 (685)
Q Consensus       383 ~Lv~~L~s~~~~~~~~a~~~L~~-La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~k-~~i~  459 (685)
                      .|++++.+.|-+.|.=|+.-|-. |-+ +..+-..=.+...+..|+++|++.+.++|..|+.+|.-|+.-- +.+ +.+ 
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqk-dsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~-   86 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQK-DSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETI-   86 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHh-hhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHH-
Confidence            67788888888888777655432 221 1111111123467889999999999999999999999887321 111 111 


Q ss_pred             hcCcHHHHHHHhcCCCCHHHHHH-HHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhcc-----CC-HHHHHHHHHHHHHh
Q 039015          460 ESGGLDFIVDMVKKGLKVEARQH-AAATLFYIASIEEYRKLIGENPEAIPALVDMVRD-----GT-DRSKKNALVAIFGL  532 (685)
Q Consensus       460 ~~g~i~~Lv~lL~~~~~~e~~~~-Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~-----~~-~~~~~~A~~aL~nL  532 (685)
                          ++.|..-+-+| ....|.- +.+.....+..+..-..... +.+++.+...+..     ++ ...+-.++..+.-+
T Consensus        87 ----ve~L~~~~~s~-keq~rdissi~Lktvi~nl~P~~~~~la-~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~  160 (1233)
T KOG1824|consen   87 ----VENLCSNMLSG-KEQLRDISSIGLKTVIANLPPSSSSFLA-ATVCKRITPKLKQAISKQEDVSAIKCEVLDILADV  160 (1233)
T ss_pred             ----HHHHhhhhccc-hhhhccHHHHHHHHHHhcCCCccccccc-cHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHH
Confidence                22333332234 3333332 22222222322221111111 2334444444432     22 23455555555444


Q ss_pred             cCCC-CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHH
Q 039015          533 LMHS-GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVS  611 (685)
Q Consensus       533 s~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~  611 (685)
                      -..- +--.. -..+....++--| .+....++..|..+|..|+..-. +....  +.+..|++=|....++....--+.
T Consensus       161 lsr~g~ll~~-fh~~il~~l~~ql-~s~R~aVrKkai~~l~~la~~~~-~~ly~--~li~~Ll~~L~~~~q~~~~rt~Iq  235 (1233)
T KOG1824|consen  161 LSRFGTLLPN-FHLSILKCLLPQL-QSPRLAVRKKAITALGHLASSCN-RDLYV--ELIEHLLKGLSNRTQMSATRTYIQ  235 (1233)
T ss_pred             HHhhcccCcc-hHHHHHHHHhhcc-cChHHHHHHHHHHHHHHHHHhcC-HHHHH--HHHHHHHhccCCCCchHHHHHHHH
Confidence            3221 11111 2334444555555 45678899999999999987421 12211  224445443332236667777888


Q ss_pred             HHHHHhccCcHHHHHHHHhcCCcHHHHHHHH---hcCChHHHHHHHHHHHHHHHhhc
Q 039015          612 LLLALCINGGANVVALLVKSPSLMGSLYSLL---SQGSSRASKKASALIRILHEFYE  665 (685)
Q Consensus       612 ~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll---~~g~~~~k~~A~~lL~~l~~~~~  665 (685)
                      +|..+|...+...-..+   ..++|.+....   ...++..+++.-..+..+-...+
T Consensus       236 ~l~~i~r~ag~r~~~h~---~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp  289 (1233)
T KOG1824|consen  236 CLAAICRQAGHRFGSHL---DKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCP  289 (1233)
T ss_pred             HHHHHHHHhcchhhccc---chhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhCh
Confidence            88888887654332222   34678888888   66677888887777766655443

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=92.59  E-value=1.5  Score=50.80  Aligned_cols=192  Identities=14%  Similarity=0.087  Sum_probs=129.0

Q ss_pred             ccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCchhHHHHhhcCCCcHHHHHHHhccCC-HHHHHHHH
Q 039015          449 SKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFY-IASIEEYRKLIGENPEAIPALVDMVRDGT-DRSKKNAL  526 (685)
Q Consensus       449 s~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~-Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~A~  526 (685)
                      +.+...+...+..|+.+.++.+...+ +.+.+..+..+|.. ++...+      .....++++...+.+.. .-..-.++
T Consensus       491 A~~K~~~~~~Ik~~~~~aLlrl~~~q-~e~akl~~~~aL~~~i~f~~~------~~~~v~~~~~s~~~~d~~~~en~E~L  563 (748)
T KOG4151|consen  491 AKEKYERAKKIKPGGYEALLRLGQQQ-FEEAKLKWYHALAGKIDFPGE------RSYEVVKPLDSALHNDEKGLENFEAL  563 (748)
T ss_pred             hhhHHhcCccccccHHHHHHHHHHHh-chHHHHHHHHHHhhhcCCCCC------chhhhhhhhcchhhhhHHHHHHHHHH
Confidence            44555677888999999999999988 88888888888872 111111      01345677777765533 22344789


Q ss_pred             HHHHHhcCCC-CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHH-HHhc-CChHHHHHHhhcCCCh
Q 039015          527 VAIFGLLMHS-GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIA-ILHH-GALDMIMKILDSCTSR  603 (685)
Q Consensus       527 ~aL~nLs~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~-i~~~-g~v~~Lv~lL~~~~s~  603 (685)
                      .++.||+... ..+.++++.-+++.+-.++ ..+++..+..++..+.||..++..-.. +++. .+++.....+... ..
T Consensus       564 ~altnLas~s~s~r~~i~ke~~~~~ie~~~-~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E  641 (748)
T KOG4151|consen  564 EALTNLASISESDRQKILKEKALGKIEELM-TEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DE  641 (748)
T ss_pred             HHhhcccCcchhhHHHHHHHhcchhhHHHh-hcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hh
Confidence            9999999755 4788898888888877676 677889999999999999998876554 4552 3477666666554 55


Q ss_pred             hHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHH
Q 039015          604 AGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRAS  650 (685)
Q Consensus       604 ~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k  650 (685)
                      ...-.+++++..+.......+.. +..-......++.++.++...++
T Consensus       642 ~~~lA~a~a~a~I~sv~~n~c~~-~~~~~~~~e~~~~~i~~~~~~~q  687 (748)
T KOG4151|consen  642 KFELAGAGALAAITSVVENHCSR-ILELLEWLEILVRAIQDEDDEIQ  687 (748)
T ss_pred             HHhhhccccccchhhcchhhhhh-HHHhhcchHHHHHhhcCchhhhh
Confidence            55556666666555443223322 22223456777777777766654

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=92.59  E-value=2.5  Score=47.53  Aligned_cols=252  Identities=18%  Similarity=0.124  Sum_probs=143.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCc---hhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchh
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIF---NRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSK  455 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~---~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k  455 (685)
                      +.++.|...|.+....++.+.+..+..++...++   .|+|+.-.   =.|+.+|.+.+.+++.+|...+.-+|.     
T Consensus       688 ~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIc---feLvd~Lks~nKeiRR~A~~tfG~Is~-----  759 (975)
T COG5181         688 GILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRIC---FELVDSLKSWNKEIRRNATETFGCISR-----  759 (975)
T ss_pred             hccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHH---HHHHHHHHHhhHHHHHhhhhhhhhHHh-----
Confidence            3567777888877788888888888888887765   35665532   246788889999999999999887763     


Q ss_pred             HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC
Q 039015          456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH  535 (685)
Q Consensus       456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~  535 (685)
                       .   -|--+.|.-+|.+= ..+.|.+-..+-..++...+++..+    .++|.|+.=-..+...++.-.+.|+..+-.+
T Consensus       760 -a---iGPqdvL~~LlnnL-kvqeRq~RvctsvaI~iVae~cgpf----sVlP~lm~dY~TPe~nVQnGvLkam~fmFey  830 (975)
T COG5181         760 -A---IGPQDVLDILLNNL-KVQERQQRVCTSVAISIVAEYCGPF----SVLPTLMSDYETPEANVQNGVLKAMCFMFEY  830 (975)
T ss_pred             -h---cCHHHHHHHHHhcc-hHHHHHhhhhhhhhhhhhHhhcCch----hhHHHHHhcccCchhHHHHhHHHHHHHHHHH
Confidence             1   23334444444433 3444444444433344444433322    2456555544445556666667777666544


Q ss_pred             CCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhc------CCChhHHHHH
Q 039015          536 SGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDS------CTSRAGKEYC  609 (685)
Q Consensus       536 ~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~------~~s~~~~e~a  609 (685)
                      -.+...=.-.-+.|.|-+.| .+.++.-+.-|..++.+|+-+..|.      |.....+.+|+.      .++|.+...-
T Consensus       831 ig~~s~dYvy~itPlleDAl-tDrD~vhRqta~nvI~Hl~Lnc~gt------g~eda~IHLlNllwpNIle~sPhvi~~~  903 (975)
T COG5181         831 IGQASLDYVYSITPLLEDAL-TDRDPVHRQTAMNVIRHLVLNCPGT------GDEDAAIHLLNLLWPNILEPSPHVIQSF  903 (975)
T ss_pred             HHHHHHHHHHHhhHHHHhhh-cccchHHHHHHHHHHHHHhcCCCCc------ccHHHHHHHHHHhhhhccCCCcHHHHHH
Confidence            44333322233566666677 6777778888999999998865432      222333333221      1266666554


Q ss_pred             HHHHHHHhccCcHHHHHHHHhcCC-cHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 039015          610 VSLLLALCINGGANVVALLVKSPS-LMGSLYSLLSQGSSRASKKASALIRILHEFY  664 (685)
Q Consensus       610 ~~~L~~L~~~~~~~~~~~l~~~~g-~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~  664 (685)
                      -..+-.++..        +.  .| .+..++.=+-.++..+++.-+...+.+-.++
T Consensus       904 ~Eg~e~~~~~--------lg--~g~~m~Yv~qGLFHPs~~VRk~ywtvyn~myv~~  949 (975)
T COG5181         904 DEGMESFATV--------LG--SGAMMKYVQQGLFHPSSTVRKRYWTVYNIMYVFD  949 (975)
T ss_pred             HHHHHHHHHH--------hc--cHHHHHHHHHhccCchHHHHHHHHHHHhhhhhcc
Confidence            4444333322        11  11 1223333344445556665566666655443

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=92.38  E-value=0.98  Score=39.01  Aligned_cols=69  Identities=16%  Similarity=0.253  Sum_probs=55.4

Q ss_pred             ChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 039015          589 ALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILH  661 (685)
Q Consensus       589 ~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~  661 (685)
                      .++.++..+.+. +.+++..|+.+|.+++...........   ..+++.|..++.+.++.++..|.-|-++|.
T Consensus        28 Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f---~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk   96 (97)
T PF12755_consen   28 ILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYF---NEIFDALCKLSADPDENVRSAAELLDRLLK   96 (97)
T ss_pred             HHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence            367788888887 999999999999999987555444333   346889999999999999999987777663

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=92.25  E-value=0.76  Score=44.56  Aligned_cols=109  Identities=17%  Similarity=0.252  Sum_probs=79.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCch-hhHHHhhCCHHHHHHhhcC---------CCHHHHHHHHHHhhccc
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFN-RSCLVEVGCIPSLLKLLSS---------KDSSTQENAIAALLNLS  449 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~-r~~i~~~G~ip~Lv~lL~s---------~~~~~~~~A~~aL~nLs  449 (685)
                      ....++..|.++....  +.+..|+..-+..+.. -..|++.||+..|+.+|..         .+...+..++.+|..|.
T Consensus        67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~  144 (187)
T PF06371_consen   67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM  144 (187)
T ss_dssp             HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence            4677788887665443  5556666555434322 3356678999999998865         34578888999999998


Q ss_pred             cCcchhHHHH-hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 039015          450 KHCKSKSMVV-ESGGLDFIVDMVKKGLKVEARQHAAATLFYIA  491 (685)
Q Consensus       450 ~~~~~k~~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls  491 (685)
                      .+..+...++ ..+++..|+..|.+. +..++..++.+|..++
T Consensus       145 n~~~G~~~v~~~~~~v~~i~~~L~s~-~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  145 NTKYGLEAVLSHPDSVNLIALSLDSP-NIKTRKLALEILAALC  186 (187)
T ss_dssp             SSHHHHHHHHCSSSHHHHHHHT--TT-SHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHcCcHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Confidence            8888877777 589999999999988 9999999999998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=92.19  E-value=15  Score=37.46  Aligned_cols=197  Identities=16%  Similarity=0.182  Sum_probs=104.5

Q ss_pred             hCCHHHHHHhhcC--CCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHH
Q 039015          420 VGCIPSLLKLLSS--KDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYR  497 (685)
Q Consensus       420 ~G~ip~Lv~lL~s--~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~  497 (685)
                      ..++|.|+..|..  ..+.++..|..+|.++- +         .+.++.+-+..+.. ..++++.+.-++..+--.+...
T Consensus        66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~-~---------~~~~~~l~k~~~dp-~~~v~ETc~lAi~rle~~~~~~  134 (289)
T KOG0567|consen   66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D---------PESLEILTKYIKDP-CKEVRETCELAIKRLEWKDIID  134 (289)
T ss_pred             chhhHHHHHHhcccccchHHHHHHHHHHHhhc-c---------hhhHHHHHHHhcCC-ccccchHHHHHHHHHHHhhccc
Confidence            3467888877765  44667777777777654 2         22233333333333 4455554444444442111000


Q ss_pred             H-----Hhh-------cCCCcHHHHHHHhccCCH-HH-HHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhH
Q 039015          498 K-----LIG-------ENPEAIPALVDMVRDGTD-RS-KKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEEL  563 (685)
Q Consensus       498 ~-----~i~-------~~~g~i~~Lv~lL~~~~~-~~-~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~  563 (685)
                      .     ...       ...+-|..|-..|.+.+. .. +..|.-+|.|+-          -..+|-.|++=| .+++.-.
T Consensus       135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g----------~EeaI~al~~~l-~~~Salf  203 (289)
T KOG0567|consen  135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIG----------TEEAINALIDGL-ADDSALF  203 (289)
T ss_pred             cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccC----------cHHHHHHHHHhc-ccchHHH
Confidence            0     000       012234455554444332 22 223333333331          112355566666 3446667


Q ss_pred             HHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhc-CCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHH
Q 039015          564 ITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDS-CTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLL  642 (685)
Q Consensus       564 ~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~-~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll  642 (685)
                      +..+.-+|..|-.          .-+||.|.+.|.. .-.|-++..|+.+|..++..   +++          +.|.+.+
T Consensus       204 rhEvAfVfGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e---~~~----------~vL~e~~  260 (289)
T KOG0567|consen  204 RHEVAFVFGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE---DCV----------EVLKEYL  260 (289)
T ss_pred             HHHHHHHHhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH---HHH----------HHHHHHc
Confidence            7777777776632          1248888885543 23778888999999888753   333          3555677


Q ss_pred             hcCChHHHHHHHHHHHHHH
Q 039015          643 SQGSSRASKKASALIRILH  661 (685)
Q Consensus       643 ~~g~~~~k~~A~~lL~~l~  661 (685)
                      .+..+.+++-+...|.++.
T Consensus       261 ~D~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  261 GDEERVVRESCEVALDMLE  279 (289)
T ss_pred             CCcHHHHHHHHHHHHHHHH
Confidence            7777777777777776653

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.13  E-value=0.12  Score=54.31  Aligned_cols=63  Identities=25%  Similarity=0.309  Sum_probs=49.5

Q ss_pred             ccCcCccccCCC------ceeccCcccccHHHHHHHHHcCCCCCCCCCccc--cCC---CCcccHHHHhhHHHH
Q 039015          281 FTCPISLEIMKD------PVTLSTGHTYDRASILKWFRAGNSTCPKTGERL--QSK---ELLVNLVLKRIIQDW  343 (685)
Q Consensus       281 ~~CpIc~~~m~d------Pv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l--~~~---~l~~n~~l~~~i~~~  343 (685)
                      +.|-||.+-+..      |-++.|||++|..|+.+.+..+.-.||.|+...  ...   .+..|+.+...++..
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~   77 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM   77 (296)
T ss_pred             CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence            567777776653      667789999999999988887777899999983  322   577788888888776

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=92.09  E-value=1.3  Score=45.13  Aligned_cols=99  Identities=20%  Similarity=0.283  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHhc-CCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHH-hcChhcHHHHHhcCChHHHHHHhh
Q 039015          521 SKKNALVAIFGLL-MHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATL-AEKLDGTIAILHHGALDMIMKILD  598 (685)
Q Consensus       521 ~~~~A~~aL~nLs-~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L-a~~~~~~~~i~~~g~v~~Lv~lL~  598 (685)
                      ....|+.+|..++ .+++.+..+-+..++..|+++|.......++..++.+|..+ ..++.+...+-+.+|+..++.+++
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk  186 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK  186 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence            4567889999999 57778999999999999999995445677777777777655 668999999999999999999998


Q ss_pred             cCC-ChhHHHHHHHHHHHHhcc
Q 039015          599 SCT-SRAGKEYCVSLLLALCIN  619 (685)
Q Consensus       599 ~~~-s~~~~e~a~~~L~~L~~~  619 (685)
                      +.+ +..++-.++..|+-....
T Consensus       187 ~~~~~~~~r~K~~EFL~fyl~~  208 (257)
T PF08045_consen  187 SKSTDRELRLKCIEFLYFYLMP  208 (257)
T ss_pred             cccccHHHhHHHHHHHHHHHcc
Confidence            752 556777888888776654

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=91.87  E-value=6  Score=38.17  Aligned_cols=92  Identities=20%  Similarity=0.169  Sum_probs=71.0

Q ss_pred             CHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCc-HHHHHHH
Q 039015          392 TSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGG-LDFIVDM  470 (685)
Q Consensus       392 ~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~-i~~Lv~l  470 (685)
                      ++.+|..++..+..|+...+.    ++ ...+|.+...|.++++.++..|+.+|..|...+--|.    .|- +..++..
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~----~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~   71 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPN----LV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKL   71 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcH----HH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHH
Confidence            467899999999999974432    22 2358899999999999999999999999976542221    132 3677778


Q ss_pred             hcCCCCHHHHHHHHHHHHHhcCc
Q 039015          471 VKKGLKVEARQHAAATLFYIASI  493 (685)
Q Consensus       471 L~~~~~~e~~~~Aa~~L~~Ls~~  493 (685)
                      +... +++++..|...+..++..
T Consensus        72 l~D~-~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   72 LVDE-NPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HcCC-CHHHHHHHHHHHHHHHHh
Confidence            8777 899999999999988765

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.82  E-value=4.6  Score=46.76  Aligned_cols=262  Identities=17%  Similarity=0.191  Sum_probs=150.3

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcch-----
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS-----  454 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-----  454 (685)
                      ..+|+-..|.+-.+-+..+|++++..|...+   -+.+..  ++..|--+|+++.+.+|-.|+++|..++.--..     
T Consensus       246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~---~r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~c  320 (865)
T KOG1078|consen  246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTN---SRELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVC  320 (865)
T ss_pred             HHHHHHHHHhchhHHHHHHHHHHHhhccccC---Hhhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccccc
Confidence            4677777777778888899999998887432   222222  677888899999999999999999988743221     


Q ss_pred             -h---HHHHh---cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--chhHHHHhhc------------CCCcHHHHHHH
Q 039015          455 -K---SMVVE---SGGLDFIVDMVKKGLKVEARQHAAATLFYIAS--IEEYRKLIGE------------NPEAIPALVDM  513 (685)
Q Consensus       455 -k---~~i~~---~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~--~~~~~~~i~~------------~~g~i~~Lv~l  513 (685)
                       +   ..|-+   .=+-.++..+|+.| +.+....-...+.+...  .++++..+.+            ..+.+..|..+
T Consensus       321 N~elE~lItd~NrsIat~AITtLLKTG-~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~  399 (865)
T KOG1078|consen  321 NLDLESLITDSNRSIATLAITTLLKTG-TESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNM  399 (865)
T ss_pred             chhHHhhhcccccchhHHHHHHHHHhc-chhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHH
Confidence             1   12221   12355667777877 55544443333333321  2233332221            23445566665


Q ss_pred             hcc-CCHHHHHHHHHHHHHhcC-CCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChH
Q 039015          514 VRD-GTDRSKKNALVAIFGLLM-HSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALD  591 (685)
Q Consensus       514 L~~-~~~~~~~~A~~aL~nLs~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~  591 (685)
                      |++ |..+-+++...+|..+.. +++.|..     +...|...+.   +-+....+..+|..|-..  |-.+..-..-+.
T Consensus       400 Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIE---Dce~~~i~~rILhlLG~E--gP~a~~Pskyir  469 (865)
T KOG1078|consen  400 LREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIE---DCEFTQIAVRILHLLGKE--GPKAPNPSKYIR  469 (865)
T ss_pred             HHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHH---hccchHHHHHHHHHHhcc--CCCCCCcchhhH
Confidence            543 334556666666655543 3333332     2344555552   223344455566555431  111111111133


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc
Q 039015          592 MIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYE  665 (685)
Q Consensus       592 ~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~  665 (685)
                      .+...+.-. +..++-.|+.+|..+...+ +.    +.  +.+.-+|...+-+.++..+..|...|+.+..-..
T Consensus       470 ~iyNRviLE-n~ivRaaAv~alaKfg~~~-~~----l~--~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~~  535 (865)
T KOG1078|consen  470 FIYNRVILE-NAIVRAAAVSALAKFGAQD-VV----LL--PSILVLLKRCLNDSDDEVRDRATFYLKNLEEKDD  535 (865)
T ss_pred             HHhhhhhhh-hhhhHHHHHHHHHHHhcCC-CC----cc--ccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhhh
Confidence            343322223 6678888999988888442 11    11  3445577788888899999999999999985443

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=91.71  E-value=0.58  Score=45.38  Aligned_cols=79  Identities=28%  Similarity=0.442  Sum_probs=63.6

Q ss_pred             HHHHHhcCChHHHHHHhcc--------CCChhHHHHHHHHHHHHhcChhcHHHHHhcCC-hHHHHHHhhcCCChhHHHHH
Q 039015          539 HWRFLAAGAVPLLLNLLTS--------SDSEELITDSLAVLATLAEKLDGTIAILHHGA-LDMIMKILDSCTSRAGKEYC  609 (685)
Q Consensus       539 ~~~iv~~G~v~~Lv~lL~~--------~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~-v~~Lv~lL~~~~s~~~~e~a  609 (685)
                      ...+++.||+..|+++|..        ..+......++.+|..|..+..|...++.... +..|+..|.+. +..++..+
T Consensus       100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~-~~~~r~~~  178 (187)
T PF06371_consen  100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSP-NIKTRKLA  178 (187)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TT-SHHHHHHH
T ss_pred             HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCC-CHHHHHHH
Confidence            4567888899999888842        23456778899999999999999999988776 89999988776 99999999


Q ss_pred             HHHHHHHhc
Q 039015          610 VSLLLALCI  618 (685)
Q Consensus       610 ~~~L~~L~~  618 (685)
                      +.+|..+|.
T Consensus       179 leiL~~lc~  187 (187)
T PF06371_consen  179 LEILAALCL  187 (187)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHC
Confidence            999999983

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=91.45  E-value=19  Score=42.99  Aligned_cols=234  Identities=18%  Similarity=0.186  Sum_probs=130.0

Q ss_pred             HHHHHHHhcC-----CCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhc----CCC----HHHHHHHHHHhhc
Q 039015          381 ANFISDRLLE-----GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLS----SKD----SSTQENAIAALLN  447 (685)
Q Consensus       381 i~~Lv~~L~s-----~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~----s~~----~~~~~~A~~aL~n  447 (685)
                      +..|+..|.+     +..+.-...++.|+..++ -..||+.+.+.|+++.|+..|.    .+.    ..+.+.-+.++-.
T Consensus       119 L~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~  197 (802)
T PF13764_consen  119 LEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIES  197 (802)
T ss_pred             HHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHH
Confidence            4555555533     334445566777777777 6899999999999999998774    333    5677777766655


Q ss_pred             cccCcchh-H----HHHh-cC----c---HHHHHHHhcCC---CCHHHHHHHHHHHHHhcCchhHHHH-hhcCCCcHHHH
Q 039015          448 LSKHCKSK-S----MVVE-SG----G---LDFIVDMVKKG---LKVEARQHAAATLFYIASIEEYRKL-IGENPEAIPAL  510 (685)
Q Consensus       448 Ls~~~~~k-~----~i~~-~g----~---i~~Lv~lL~~~---~~~e~~~~Aa~~L~~Ls~~~~~~~~-i~~~~g~i~~L  510 (685)
                      |....... .    .... .|    .   +..++..+.+.   .+..+....+.+|-+|+..++.+.. +.+   -+.+.
T Consensus       198 ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~---~F~p~  274 (802)
T PF13764_consen  198 LLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE---HFKPY  274 (802)
T ss_pred             HHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH---HHHHh
Confidence            53322110 0    1011 11    2   55555555533   2577888899999999987754433 322   23443


Q ss_pred             HHHhccC---CHHHHHHHHHHHHHhcCCC-------CcHHHHHhcCChHHHHHHhccC-------CChh--------HHH
Q 039015          511 VDMVRDG---TDRSKKNALVAIFGLLMHS-------GNHWRFLAAGAVPLLLNLLTSS-------DSEE--------LIT  565 (685)
Q Consensus       511 v~lL~~~---~~~~~~~A~~aL~nLs~~~-------~n~~~iv~~G~v~~Lv~lL~~~-------~~~~--------~~~  565 (685)
                      +++=+-+   +++. ...+..+..++..-       .-|..+++.|++...++.|...       .+++        ...
T Consensus       275 l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp  353 (802)
T PF13764_consen  275 LDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLP  353 (802)
T ss_pred             cChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHH
Confidence            3432211   1111 22345555554221       2477889999999999988521       1122        234


Q ss_pred             HHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhcc
Q 039015          566 DSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCIN  619 (685)
Q Consensus       566 ~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~  619 (685)
                      .++.+|.-||......+.+...+.++.+-.+=...+...+=..|=.+|-.|+.+
T Consensus       354 ~iL~lL~GLa~gh~~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~  407 (802)
T PF13764_consen  354 YILRLLRGLARGHEPTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAEN  407 (802)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcC
Confidence            477788888776554444455556654444333321222223344444445543

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=91.30  E-value=0.2  Score=44.83  Aligned_cols=50  Identities=18%  Similarity=0.267  Sum_probs=42.8

Q ss_pred             CCccCcCccccCCCceec----cCcccccHHHHHHHHHc--CCCCCCCCCccccCC
Q 039015          279 DDFTCPISLEIMKDPVTL----STGHTYDRASILKWFRA--GNSTCPKTGERLQSK  328 (685)
Q Consensus       279 ~~~~CpIc~~~m~dPv~~----~cghtfcr~ci~~~~~~--~~~~CP~c~~~l~~~  328 (685)
                      .-+.|.||.+.-.|+-.+    .||...|..|.-..|+.  -++.||.|+.++...
T Consensus        79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss  134 (140)
T PF05290_consen   79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS  134 (140)
T ss_pred             CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence            468999999999999988    59999999999887774  478999999887654

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=90.98  E-value=9.7  Score=36.72  Aligned_cols=93  Identities=19%  Similarity=0.236  Sum_probs=71.6

Q ss_pred             CHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHh
Q 039015          476 KVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLL  555 (685)
Q Consensus       476 ~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL  555 (685)
                      ++.+|.+++.++..|+..-.+  .+   ...++.+...|+++++.+++.|+.+|.+|...+-.+.+   ...+..++.++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~--~v---e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l   72 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPN--LV---EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLL   72 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcH--HH---HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHH
Confidence            367889999999988764432  11   34688999999999999999999999999765543322   12236677777


Q ss_pred             ccCCChhHHHHHHHHHHHHhcC
Q 039015          556 TSSDSEELITDSLAVLATLAEK  577 (685)
Q Consensus       556 ~~~~~~~~~~~al~~L~~La~~  577 (685)
                       .|+++.++..|...+..+...
T Consensus        73 -~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   73 -VDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             -cCCCHHHHHHHHHHHHHHHHh
Confidence             788999999999999999775

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=90.83  E-value=0.92  Score=42.95  Aligned_cols=146  Identities=15%  Similarity=0.159  Sum_probs=93.5

Q ss_pred             HHHHHHhhcC--CCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHH
Q 039015          423 IPSLLKLLSS--KDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKL  499 (685)
Q Consensus       423 ip~Lv~lL~s--~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~  499 (685)
                      +..++..|..  ..++++-.|.-++..+-  +..++.. ..-+-+.+-..+..+ +.+....+..++..|--.. +....
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~-~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~   80 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEF-KEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSE   80 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHH-HHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHH
Confidence            4455655543  56778888887776662  3333333 222334444445555 5567778888888775444 77777


Q ss_pred             hhcCCCcHHHHHHHhc--cCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChh-HHHHHHHHHHH
Q 039015          500 IGENPEAIPALVDMVR--DGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEE-LITDSLAVLAT  573 (685)
Q Consensus       500 i~~~~g~i~~Lv~lL~--~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~-~~~~al~~L~~  573 (685)
                      +....|.++.++.++.  ..+......++.+|..-| .++++...+...+++.|-++++.++++. ++..|+-+|..
T Consensus        81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc-~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC-IDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT-TSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            7766899999999998  556667777777776554 4455555666667999999995555555 66666666653

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG3113 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.71  E-value=0.18  Score=49.89  Aligned_cols=52  Identities=19%  Similarity=0.374  Sum_probs=41.3

Q ss_pred             CCCccCcCccccCCCcee----ccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcc
Q 039015          278 PDDFTCPISLEIMKDPVT----LSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLV  332 (685)
Q Consensus       278 ~~~~~CpIc~~~m~dPv~----~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~  332 (685)
                      ...|.|||.+-.|..-..    .+|||.|-...+.+.-   ...|+.|++.....+.++
T Consensus       109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIv  164 (293)
T KOG3113|consen  109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIV  164 (293)
T ss_pred             cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEe
Confidence            456999999999998643    3899999988876653   568999999998776433

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.60  E-value=10  Score=44.17  Aligned_cols=210  Identities=15%  Similarity=0.135  Sum_probs=140.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHh
Q 039015          381 ANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVE  460 (685)
Q Consensus       381 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~  460 (685)
                      -.-|+++|.|.....+..|.+-|-.+...+.+      -....|..|+...+.|.++....---|..-+....+-..+  
T Consensus        37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~d------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--  108 (968)
T KOG1060|consen   37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGKD------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--  108 (968)
T ss_pred             hHHHHHHHhccccHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee--
Confidence            35678899888888899998876555433433      2345688888888899998887766666555544442222  


Q ss_pred             cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-CcH
Q 039015          461 SGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS-GNH  539 (685)
Q Consensus       461 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~n~  539 (685)
                        -|..+-+-|+.. +..+|..|..+|..+      |..+.. +=.+-++-+...+.++.+++.|+.||-.|-.-+ +-+
T Consensus       109 --SIntfQk~L~Dp-N~LiRasALRvlSsI------Rvp~Ia-PI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k  178 (968)
T KOG1060|consen  109 --SINTFQKALKDP-NQLIRASALRVLSSI------RVPMIA-PIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK  178 (968)
T ss_pred             --eHHHHHhhhcCC-cHHHHHHHHHHHHhc------chhhHH-HHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH
Confidence              255666677888 899998888887766      332222 112233334455677899999999998886544 444


Q ss_pred             HHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhcc
Q 039015          540 WRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCIN  619 (685)
Q Consensus       540 ~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~  619 (685)
                      ..+++     .+=.|| .+.++.+.-.|+.+...+|-+  .-+.|  ++....|..++..- ..+++-..+..|..-|++
T Consensus       179 ~qL~e-----~I~~LL-aD~splVvgsAv~AF~evCPe--rldLI--HknyrklC~ll~dv-deWgQvvlI~mL~RYAR~  247 (968)
T KOG1060|consen  179 DQLEE-----VIKKLL-ADRSPLVVGSAVMAFEEVCPE--RLDLI--HKNYRKLCRLLPDV-DEWGQVVLINMLTRYARH  247 (968)
T ss_pred             HHHHH-----HHHHHh-cCCCCcchhHHHHHHHHhchh--HHHHh--hHHHHHHHhhccch-hhhhHHHHHHHHHHHHHh
Confidence            44333     334445 788889988888888877653  22322  24467788877665 778888888888888764

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=90.03  E-value=1.7  Score=44.87  Aligned_cols=187  Identities=16%  Similarity=0.135  Sum_probs=113.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcC--cHHHHHHHhcCC---CCHHHHHHHHHHHHHhcCchhHH
Q 039015          423 IPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESG--GLDFIVDMVKKG---LKVEARQHAAATLFYIASIEEYR  497 (685)
Q Consensus       423 ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g--~i~~Lv~lL~~~---~~~e~~~~Aa~~L~~Ls~~~~~~  497 (685)
                      +..+..++.+...+-+--++..++-+..++..-..+...+  ....+..++..+   ..+..+..++.++.||-.+...+
T Consensus        65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~  144 (268)
T PF08324_consen   65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR  144 (268)
T ss_dssp             HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred             HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence            3444555555555556666777777777776655554322  355566655543   26788899999999999988888


Q ss_pred             HHhhcCCC-cHHHHHHHhccC----CHHHHHHHHHHHHHhcCCCC-cH-HHHHhcCChHHHHHHhcc-CCChhHHHHHHH
Q 039015          498 KLIGENPE-AIPALVDMVRDG----TDRSKKNALVAIFGLLMHSG-NH-WRFLAAGAVPLLLNLLTS-SDSEELITDSLA  569 (685)
Q Consensus       498 ~~i~~~~g-~i~~Lv~lL~~~----~~~~~~~A~~aL~nLs~~~~-n~-~~iv~~G~v~~Lv~lL~~-~~~~~~~~~al~  569 (685)
                      ..+....+ .|...+..+...    +...+..+++.++|++..-- ++ ..-.....+..+++.+.. ..+++..-.++.
T Consensus       145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~Lv  224 (268)
T PF08324_consen  145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLV  224 (268)
T ss_dssp             HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHH
T ss_pred             HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence            88877344 455555544443    56778888999999984321 11 111111234555663322 257888999999


Q ss_pred             HHHHHhcChhcHHHHHhcCChHHHHH-HhhcCCChhHHHHH
Q 039015          570 VLATLAEKLDGTIAILHHGALDMIMK-ILDSCTSRAGKEYC  609 (685)
Q Consensus       570 ~L~~La~~~~~~~~i~~~g~v~~Lv~-lL~~~~s~~~~e~a  609 (685)
                      +|.+|...+.........=++...+. .-..+..++.++.+
T Consensus       225 AlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~  265 (268)
T PF08324_consen  225 ALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVA  265 (268)
T ss_dssp             HHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHh
Confidence            99999987766666655434444433 33333356666554

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=89.86  E-value=23  Score=37.57  Aligned_cols=192  Identities=20%  Similarity=0.196  Sum_probs=107.5

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhc-CCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC---CCcHHH
Q 039015          466 FIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGE-NPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH---SGNHWR  541 (685)
Q Consensus       466 ~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~---~~n~~~  541 (685)
                      ..+..+... +...|+.+...|.++....-.-..+.. ....+..+.+.++.|+.+-+..|+.++.-|+..   .+....
T Consensus        47 ~~Id~l~eK-~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e  125 (309)
T PF05004_consen   47 EAIDLLTEK-SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE  125 (309)
T ss_pred             HHHHHHHhc-CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence            334444444 678899999998887644322222322 123677888888888876666777777766654   234555


Q ss_pred             HHhcCChHHHHHHhccCC-ChhHHHHHHHHHHHHhc---C-hhcHHHHHhcCChHHHHH--Hhhc-CC--------ChhH
Q 039015          542 FLAAGAVPLLLNLLTSSD-SEELITDSLAVLATLAE---K-LDGTIAILHHGALDMIMK--ILDS-CT--------SRAG  605 (685)
Q Consensus       542 iv~~G~v~~Lv~lL~~~~-~~~~~~~al~~L~~La~---~-~~~~~~i~~~g~v~~Lv~--lL~~-~~--------s~~~  605 (685)
                      +.+ ...|.|...+..+. ....+..|+.+|+.++.   . ++.....++  .+..+..  +.+. |.        ++.+
T Consensus       126 i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l  202 (309)
T PF05004_consen  126 IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAAL  202 (309)
T ss_pred             HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHH
Confidence            555 37888888884332 23444555555555433   2 222221111  1111111  1111 10        2345


Q ss_pred             HHHHHHHHHHHhccCcH-HHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 039015          606 KEYCVSLLLALCINGGA-NVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFY  664 (685)
Q Consensus       606 ~e~a~~~L~~L~~~~~~-~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~  664 (685)
                      .-.|+.+-.-|...-+. .+...+.   ..++.|..+|.+.+..++-.|...|.+|-+..
T Consensus       203 ~~aAL~aW~lLlt~~~~~~~~~~~~---~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~  259 (309)
T PF05004_consen  203 VAAALSAWALLLTTLPDSKLEDLLE---EALPALSELLDSDDVDVRIAAGEAIALLYELA  259 (309)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHH---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            55555444444433323 3343332   34999999999999999999988888885543

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.41  E-value=14  Score=42.86  Aligned_cols=26  Identities=15%  Similarity=0.271  Sum_probs=17.9

Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHHhcc
Q 039015          593 IMKILDSCTSRAGKEYCVSLLLALCIN  619 (685)
Q Consensus       593 Lv~lL~~~~s~~~~e~a~~~L~~L~~~  619 (685)
                      ++.+|... +-.++..+..+...|...
T Consensus       322 vLrvLss~-dldvr~Ktldi~ldLvss  347 (948)
T KOG1058|consen  322 VLRVLSSP-DLDVRSKTLDIALDLVSS  347 (948)
T ss_pred             HHHHcCcc-cccHHHHHHHHHHhhhhh
Confidence            34445444 777888888888887765

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=89.10  E-value=1  Score=42.59  Aligned_cols=147  Identities=16%  Similarity=0.156  Sum_probs=94.6

Q ss_pred             cHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-CcHH
Q 039015          463 GLDFIVDMVKK-GLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS-GNHW  540 (685)
Q Consensus       463 ~i~~Lv~lL~~-~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~n~~  540 (685)
                      .+..++..|.. ..+.++|..|+-++..+-  +..+....+  -+-+.+-.++..++.+....+..++..|-... +...
T Consensus         4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~--~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~   79 (157)
T PF11701_consen    4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE--KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS   79 (157)
T ss_dssp             CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred             HHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH--HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence            44556666654 336788988888887773  444444433  12233333444444556777777777775433 4444


Q ss_pred             HH-HhcCChHHHHHHhc-cCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChh-HHHHHHHHHH
Q 039015          541 RF-LAAGAVPLLLNLLT-SSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRA-GKEYCVSLLL  614 (685)
Q Consensus       541 ~i-v~~G~v~~Lv~lL~-~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~-~~e~a~~~L~  614 (685)
                      .+ ...|..+.++.++. ...+..+...++.+|..-|.+...|..|.+. +++.|-++++.+.++. ++-.|+-+|.
T Consensus        80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v~L~  155 (157)
T PF11701_consen   80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN-YVSWLKELYKNSKDDSEIRVLAAVGLC  155 (157)
T ss_dssp             HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH-CHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHccccchHHHHHHHHHHHh
Confidence            44 46889999999994 2567788888888888888888888888764 6787888886542444 5666655553

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=89.09  E-value=45  Score=37.72  Aligned_cols=271  Identities=14%  Similarity=0.092  Sum_probs=162.7

Q ss_pred             HHHHHHHHhcCC-CHHHHHHHHHHHHHHhhcCCchhhHHHhhCCH-HHHH-HhhcC-CCHHHHHHHHHHhhc-cc-----
Q 039015          380 LANFISDRLLEG-TSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCI-PSLL-KLLSS-KDSSTQENAIAALLN-LS-----  449 (685)
Q Consensus       380 ~i~~Lv~~L~s~-~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i-p~Lv-~lL~s-~~~~~~~~A~~aL~n-Ls-----  449 (685)
                      ....+++....+ ....+..++..+.+.+. +..-...+...++| -.++ .-++. ++..++..|+.+|.+ |-     
T Consensus       134 lm~~mv~nvg~eqp~~~k~~sl~~~gy~ce-s~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~n  212 (858)
T COG5215         134 LMEEMVRNVGDEQPVSGKCESLGICGYHCE-SEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGN  212 (858)
T ss_pred             HHHHHHHhccccCchHhHHHHHHHHHHHhh-ccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHh
Confidence            344555555433 34578889999999886 43333444444433 2233 23443 567889999999987 32     


Q ss_pred             -cCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHH
Q 039015          450 -KHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDGTDRSKKNALV  527 (685)
Q Consensus       450 -~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~  527 (685)
                       .++.+|..++     ...++.-+.. +.+++..|...|..+-... +.-..+.+ .-........+++.++++...|+.
T Consensus       213 f~~E~erNy~m-----qvvceatq~~-d~e~q~aafgCl~kim~LyY~fm~~ymE-~aL~alt~~~mks~nd~va~qavE  285 (858)
T COG5215         213 FCYEEERNYFM-----QVVCEATQGN-DEELQHAAFGCLNKIMMLYYKFMQSYME-NALAALTGRFMKSQNDEVAIQAVE  285 (858)
T ss_pred             hcchhhhchhh-----eeeehhccCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCcchHHHHHHHH
Confidence             2233444443     2333444444 7888888888887764422 44445555 444555566778888888887776


Q ss_pred             HHHHhcCCC---------------CcHH--HHHhcCChHHHHHHhcc-CC-----ChhHHHHHHHHHHHHhcChhcHHHH
Q 039015          528 AIFGLLMHS---------------GNHW--RFLAAGAVPLLLNLLTS-SD-----SEELITDSLAVLATLAEKLDGTIAI  584 (685)
Q Consensus       528 aL~nLs~~~---------------~n~~--~iv~~G~v~~Lv~lL~~-~~-----~~~~~~~al~~L~~La~~~~~~~~i  584 (685)
                      .-..+|...               .|..  +..-+.++|.|+++|.. ++     +=.....|.++|...+....  ..|
T Consensus       286 fWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g--d~i  363 (858)
T COG5215         286 FWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG--DKI  363 (858)
T ss_pred             HHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh--hHh
Confidence            554444221               0222  22234589999999953 11     11234455556555554211  122


Q ss_pred             HhcCChHHHHH-HhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015          585 LHHGALDMIMK-ILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF  663 (685)
Q Consensus       585 ~~~g~v~~Lv~-lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~  663 (685)
                      ++.  |-..++ -+++. +-..+|.|+-++..+-..........++  +.++|.+..++.+..--++..++|.+..+..+
T Consensus       364 ~~p--Vl~FvEqni~~~-~w~nreaavmAfGSvm~gp~~~~lT~~V--~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~  438 (858)
T COG5215         364 MRP--VLGFVEQNIRSE-SWANREAAVMAFGSVMHGPCEDCLTKIV--PQALPGIENEMSDSCLWVKSTTAWCFGAIADH  438 (858)
T ss_pred             HHH--HHHHHHHhccCc-hhhhHHHHHHHhhhhhcCccHHHHHhhH--HhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence            221  222333 45555 7788999999999888765555555555  35688999988877777888888888888876


Q ss_pred             hc
Q 039015          664 YE  665 (685)
Q Consensus       664 ~~  665 (685)
                      -.
T Consensus       439 va  440 (858)
T COG5215         439 VA  440 (858)
T ss_pred             HH
Confidence            43

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.98  E-value=0.073  Score=53.71  Aligned_cols=42  Identities=21%  Similarity=0.305  Sum_probs=33.2

Q ss_pred             CCccCcCccccCCCceeccCccc-ccHHHHHHHHHcCCCCCCCCCccc
Q 039015          279 DDFTCPISLEIMKDPVTLSTGHT-YDRASILKWFRAGNSTCPKTGERL  325 (685)
Q Consensus       279 ~~~~CpIc~~~m~dPv~~~cght-fcr~ci~~~~~~~~~~CP~c~~~l  325 (685)
                      .+..|.||++..+|.|.++|||. -|-.|=.     ....||+||+.+
T Consensus       299 ~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGk-----rm~eCPICRqyi  341 (350)
T KOG4275|consen  299 TRRLCAICMDAPRDCVFLECGHMVTCTKCGK-----RMNECPICRQYI  341 (350)
T ss_pred             HHHHHHHHhcCCcceEEeecCcEEeehhhcc-----ccccCchHHHHH
Confidence            37899999999999999999995 3666621     134799998865

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=88.94  E-value=16  Score=39.81  Aligned_cols=83  Identities=16%  Similarity=0.099  Sum_probs=70.0

Q ss_pred             CHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhc-C---CCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHH
Q 039015          392 TSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLS-S---KDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFI  467 (685)
Q Consensus       392 ~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~-s---~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~L  467 (685)
                      .+..-..|+..+..+..+.|..-..+.++|.++.++..+. .   +..++...--.+|..|+.|..+.+.+.+.++++.+
T Consensus       122 G~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~  201 (379)
T PF06025_consen  122 GPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKL  201 (379)
T ss_pred             chHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHH
Confidence            3456667888888888888888889999999999998777 3   45677777778889999999999999999999999


Q ss_pred             HHHhcCC
Q 039015          468 VDMVKKG  474 (685)
Q Consensus       468 v~lL~~~  474 (685)
                      ++++.+.
T Consensus       202 f~if~s~  208 (379)
T PF06025_consen  202 FEIFTSP  208 (379)
T ss_pred             HHHhCCH
Confidence            9999765

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=88.94  E-value=1.7  Score=37.46  Aligned_cols=70  Identities=19%  Similarity=0.142  Sum_probs=51.7

Q ss_pred             cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 039015          461 SGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLL  533 (685)
Q Consensus       461 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs  533 (685)
                      .-.+++++..+... +..+|..|+.+|++++..-.....-.- ...++.|.+++.+.++.++. ++..|-+|-
T Consensus        26 ~~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl~~D~d~~Vr~-~a~~Ld~ll   95 (97)
T PF12755_consen   26 DEILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKLSADPDENVRS-AAELLDRLL   95 (97)
T ss_pred             HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCchhHHH-HHHHHHHHh
Confidence            45789999999988 999999999999999865432221111 45889999998887777664 556666653

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=88.89  E-value=6.5  Score=44.78  Aligned_cols=168  Identities=14%  Similarity=0.066  Sum_probs=107.8

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHh---hCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhc
Q 039015          385 SDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVE---VGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVES  461 (685)
Q Consensus       385 v~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~---~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~  461 (685)
                      ...+..-+.+.+.-|+..||.+.++...+-..+-.   ...+..++..+. .++.-+..++++|.|+-.++.+++.++..
T Consensus       550 l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~  628 (745)
T KOG0301|consen  550 LAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR  628 (745)
T ss_pred             HHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            34445567788999999999999865444333321   235555665554 56788999999999999998888888854


Q ss_pred             -CcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc--hhHHHHhhcCCCcHHHHHHHhcc-----CCHHHHHHHHHHHHHhc
Q 039015          462 -GGLDFIVDMVKKGLKVEARQHAAATLFYIASI--EEYRKLIGENPEAIPALVDMVRD-----GTDRSKKNALVAIFGLL  533 (685)
Q Consensus       462 -g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~lL~~-----~~~~~~~~A~~aL~nLs  533 (685)
                       ..+...+--.+.+.+..++...+.+.+|++..  ..+-+     .|..+.|...+..     .+.++.-.++.||.+|+
T Consensus       629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~-----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~  703 (745)
T KOG0301|consen  629 LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ-----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLM  703 (745)
T ss_pred             HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc-----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhc
Confidence             22222222233442455666555555666532  11111     3445555554432     12345667888999999


Q ss_pred             CCCCcHHHHHhcCChHHHHHHhccC
Q 039015          534 MHSGNHWRFLAAGAVPLLLNLLTSS  558 (685)
Q Consensus       534 ~~~~n~~~iv~~G~v~~Lv~lL~~~  558 (685)
                      ..+.+..++...-.|..+++-++..
T Consensus       704 t~~~~~~~~A~~~~v~sia~~~~~~  728 (745)
T KOG0301|consen  704 TVDASVIQLAKNRSVDSIAKKLKEA  728 (745)
T ss_pred             cccHHHHHHHHhcCHHHHHHHHHHh
Confidence            9998888888877788888888543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.76  E-value=0.47  Score=54.82  Aligned_cols=41  Identities=20%  Similarity=0.366  Sum_probs=35.3

Q ss_pred             CCccCcCccccCCCceec-cCcccccHHHHHHHHHcCCCCCCCCCc
Q 039015          279 DDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRAGNSTCPKTGE  323 (685)
Q Consensus       279 ~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~  323 (685)
                      ..-.|..|...+.-|++- .|||.|.+.|++    .+...||.|..
T Consensus       839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~  880 (933)
T KOG2114|consen  839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP  880 (933)
T ss_pred             eeeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence            346899999999999764 899999999987    55789999966

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=88.68  E-value=14  Score=38.87  Aligned_cols=190  Identities=16%  Similarity=0.142  Sum_probs=118.6

Q ss_pred             CCHHHHH-HhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh--HH
Q 039015          421 GCIPSLL-KLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE--YR  497 (685)
Q Consensus       421 G~ip~Lv-~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~~  497 (685)
                      |.+..|+ .-+.+.++.+++.|+.+|+-.+.-+..   ++ ...++.+.+.++.+ +.+++..|+.+++.+.....  .-
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~---~a-~~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~~  100 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE---LA-KEHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDIF  100 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH---HH-HHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchhc
Confidence            4444444 567788999999999999888866542   11 22367788888888 99999999999998864332  11


Q ss_pred             HH-------hhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCC--ChhHHHHHH
Q 039015          498 KL-------IGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSD--SEELITDSL  568 (685)
Q Consensus       498 ~~-------i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~--~~~~~~~al  568 (685)
                      ..       ... ...+..+.+.+.+.+++.+..|+..+..|-.++....   ...++..|+-+-.+..  +..-..+++
T Consensus       101 ~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L  176 (298)
T PF12719_consen  101 DSESDNDESVDS-KSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCL  176 (298)
T ss_pred             cchhccCccchH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence            11       112 4577888888888899999999999999876665433   1223334444433322  223445555


Q ss_pred             HHHH-HHhcChhcHHHHHhcCChHHHHHHhhcCC---Chh---HHHHHHHHHHHHhcc
Q 039015          569 AVLA-TLAEKLDGTIAILHHGALDMIMKILDSCT---SRA---GKEYCVSLLLALCIN  619 (685)
Q Consensus       569 ~~L~-~La~~~~~~~~i~~~g~v~~Lv~lL~~~~---s~~---~~e~a~~~L~~L~~~  619 (685)
                      +... ..+.........+....+|.+..+.+...   ++.   .-...+..+..++..
T Consensus       177 ~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~  234 (298)
T PF12719_consen  177 SVFFPVYASSSPENQERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDP  234 (298)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCCh
Confidence            5554 44655443344555566787777666531   111   123556666666653

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=88.61  E-value=0.3  Score=41.53  Aligned_cols=27  Identities=19%  Similarity=0.635  Sum_probs=24.5

Q ss_pred             cCcccccHHHHHHHHHcCCCCCCCCCcc
Q 039015          297 STGHTYDRASILKWFRAGNSTCPKTGER  324 (685)
Q Consensus       297 ~cghtfcr~ci~~~~~~~~~~CP~c~~~  324 (685)
                      .|.|.|.-.||.+|++. ...||.|.+.
T Consensus        80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e  106 (114)
T KOG2930|consen   80 VCNHAFHFHCISRWLKT-RNVCPLDNKE  106 (114)
T ss_pred             ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence            69999999999999998 7889999765

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=88.55  E-value=0.72  Score=40.35  Aligned_cols=34  Identities=15%  Similarity=0.284  Sum_probs=28.9

Q ss_pred             CCCCCCccCcCccccCCCceec--cCcccccHHHHH
Q 039015          275 GLTPDDFTCPISLEIMKDPVTL--STGHTYDRASIL  308 (685)
Q Consensus       275 ~~~~~~~~CpIc~~~m~dPv~~--~cghtfcr~ci~  308 (685)
                      ..+.++-.|++|++.+.++++.  ||||.|...|+.
T Consensus        73 v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   73 VVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             EEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence            3677788899999999988754  999999999974

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.54  E-value=0.44  Score=50.71  Aligned_cols=34  Identities=21%  Similarity=0.387  Sum_probs=27.6

Q ss_pred             CccCcCccccCCCc---eeccCcccccHHHHHHHHHc
Q 039015          280 DFTCPISLEIMKDP---VTLSTGHTYDRASILKWFRA  313 (685)
Q Consensus       280 ~~~CpIc~~~m~dP---v~~~cghtfcr~ci~~~~~~  313 (685)
                      -|.|.||++...--   +.++|+|.||++|...|+..
T Consensus       184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~  220 (445)
T KOG1814|consen  184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTI  220 (445)
T ss_pred             cccceeeehhhcCcceeeecccchHHHHHHHHHHHHH
Confidence            59999999766542   34599999999999999973

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=88.43  E-value=6.3  Score=43.91  Aligned_cols=155  Identities=17%  Similarity=0.227  Sum_probs=105.4

Q ss_pred             cHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCC---ChhHHHHHHHHHHHHhcChhcHH
Q 039015          506 AIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSD---SEELITDSLAVLATLAEKLDGTI  582 (685)
Q Consensus       506 ~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~---~~~~~~~al~~L~~La~~~~~~~  582 (685)
                      ....+.+++.+|+...+..|+..|..|+.+......++...++..|..++.++.   ...+..-++.++.-+-.+.-..=
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            456788899999999999999999999999999999999999999999995433   23455555555555544322110


Q ss_pred             HHHhcCChHHHHHHhhcC-CChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 039015          583 AILHHGALDMIMKILDSC-TSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILH  661 (685)
Q Consensus       583 ~i~~~g~v~~Lv~lL~~~-~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~  661 (685)
                      ..+...+|.....+.+.. -...+-..|++.|-++..++.. ..+.+.+ .--+..|...++.++.+...+|-++++.+-
T Consensus       164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~-~~~~v~e-ev~i~~li~hlq~~n~~i~~~aial~nal~  241 (713)
T KOG2999|consen  164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDT-LRQLVAE-EVPIETLIRHLQVSNQRIQTCAIALLNALF  241 (713)
T ss_pred             eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChH-HHHHHHh-cCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            111222233333333211 1334556889999888877533 2333333 456889999999999999999999988764


Q ss_pred             H
Q 039015          662 E  662 (685)
Q Consensus       662 ~  662 (685)
                      .
T Consensus       242 ~  242 (713)
T KOG2999|consen  242 R  242 (713)
T ss_pred             h
Confidence            3

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=88.34  E-value=18  Score=36.84  Aligned_cols=197  Identities=18%  Similarity=0.225  Sum_probs=117.5

Q ss_pred             HHHHHHHHhc--CCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccC---cc-
Q 039015          380 LANFISDRLL--EGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKH---CK-  453 (685)
Q Consensus       380 ~i~~Lv~~L~--s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~---~~-  453 (685)
                      .++.|+..|.  ++.+-+|.+|..+|..+-.           .+..+.+-+..+.+...+.+.+..++..+---   .. 
T Consensus        68 Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~  136 (289)
T KOG0567|consen   68 AVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKI  136 (289)
T ss_pred             hhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccc
Confidence            5788888874  4556677788888876641           23455555555555556666555555443110   00 


Q ss_pred             -hhHHH--------HhcCcHHHHHHHhcCCCCHHH-HHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHH
Q 039015          454 -SKSMV--------VESGGLDFIVDMVKKGLKVEA-RQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKK  523 (685)
Q Consensus       454 -~k~~i--------~~~g~i~~Lv~lL~~~~~~e~-~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~  523 (685)
                       +....        ...+-+..+-..|.....+.. |.   .++|+|-       .+|. ..+|.+|++-+..++.-.+-
T Consensus       137 ~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry---~amF~LR-------n~g~-EeaI~al~~~l~~~Salfrh  205 (289)
T KOG0567|consen  137 ANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERY---RAMFYLR-------NIGT-EEAINALIDGLADDSALFRH  205 (289)
T ss_pred             cccCccccCCCCCccccccHHHHHHHHHhcchhHHHHH---hhhhHhh-------ccCc-HHHHHHHHHhcccchHHHHH
Confidence             00000        111223333333332201111 22   2233331       1122 34678888888877777788


Q ss_pred             HHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhcc-CCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCC
Q 039015          524 NALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTS-SDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTS  602 (685)
Q Consensus       524 ~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~-~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s  602 (685)
                      .++.++..|          ..--+||.|.+.|.. ..++.++..|+.+|..++..          ..++.|.+.+.+. .
T Consensus       206 EvAfVfGQl----------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e----------~~~~vL~e~~~D~-~  264 (289)
T KOG0567|consen  206 EVAFVFGQL----------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE----------DCVEVLKEYLGDE-E  264 (289)
T ss_pred             HHHHHHhhc----------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH----------HHHHHHHHHcCCc-H
Confidence            888888776          455678999998853 34688889999999888763          2467778888887 8


Q ss_pred             hhHHHHHHHHHHHHhcc
Q 039015          603 RAGKEYCVSLLLALCIN  619 (685)
Q Consensus       603 ~~~~e~a~~~L~~L~~~  619 (685)
                      +.+++.|..+|-.+-..
T Consensus       265 ~vv~esc~valdm~eye  281 (289)
T KOG0567|consen  265 RVVRESCEVALDMLEYE  281 (289)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            88999988888665543

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=88.33  E-value=0.29  Score=49.97  Aligned_cols=49  Identities=27%  Similarity=0.472  Sum_probs=40.0

Q ss_pred             CCCCCccCcCccccCC---CceeccCcccccHHHHHHHHHcC--CCCCCCCCcc
Q 039015          276 LTPDDFTCPISLEIMK---DPVTLSTGHTYDRASILKWFRAG--NSTCPKTGER  324 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~---dPv~~~cghtfcr~ci~~~~~~~--~~~CP~c~~~  324 (685)
                      ....-|.||+..+.-.   .|+.+.|||..-...+...-++|  .+.||.|...
T Consensus       332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~  385 (396)
T COG5109         332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM  385 (396)
T ss_pred             cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence            4556699999888766   48999999999999998877766  5789999654

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=88.20  E-value=0.47  Score=49.60  Aligned_cols=61  Identities=16%  Similarity=0.352  Sum_probs=47.6

Q ss_pred             CCCCCccCcCccccCCCceec-cCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHH
Q 039015          276 LTPDDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDW  343 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~  343 (685)
                      ...+-+.||+|.+.|..|+.= .-||.-|..|=.+.    ...||.|+.++.+   +.+..+...++..
T Consensus        44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~----~~~CP~Cr~~~g~---~R~~amEkV~e~~  105 (299)
T KOG3002|consen   44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV----SNKCPTCRLPIGN---IRCRAMEKVAEAV  105 (299)
T ss_pred             cchhhccCchhhccCcccceecCCCcEehhhhhhhh----cccCCcccccccc---HHHHHHHHHHHhc
Confidence            456679999999999999754 57999999996432    6689999998873   3667777776654

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=88.18  E-value=0.18  Score=49.41  Aligned_cols=48  Identities=25%  Similarity=0.513  Sum_probs=37.1

Q ss_pred             CCccCcCcc-ccCCCcee--c--c-CcccccHHHHHHHHHcCCCCCC--CCCcccc
Q 039015          279 DDFTCPISL-EIMKDPVT--L--S-TGHTYDRASILKWFRAGNSTCP--KTGERLQ  326 (685)
Q Consensus       279 ~~~~CpIc~-~~m~dPv~--~--~-cghtfcr~ci~~~~~~~~~~CP--~c~~~l~  326 (685)
                      .+-.||+|. +.+-+|-+  +  | |-|..|-+|+.+.|..|...||  -|++-+.
T Consensus         9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR   64 (314)
T COG5220           9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR   64 (314)
T ss_pred             hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence            357899998 44445522  2  5 9999999999999999999999  5776554

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=87.94  E-value=8.9  Score=44.64  Aligned_cols=207  Identities=14%  Similarity=0.135  Sum_probs=130.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHH-HHhhcCCchhhHHHhhCCHHHHHHhhcCCCH-HHHHHHHHHhhccccCcch-hHH
Q 039015          381 ANFISDRLLEGTSEEKNKVAYEVR-LLTKSSIFNRSCLVEVGCIPSLLKLLSSKDS-STQENAIAALLNLSKHCKS-KSM  457 (685)
Q Consensus       381 i~~Lv~~L~s~~~~~~~~a~~~L~-~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~-~~~~~A~~aL~nLs~~~~~-k~~  457 (685)
                      ...|+++...+.++.+.++.++|. .+..  +..|    ....++++.+.+..... .---.++.++.||+..+++ |..
T Consensus       506 ~~aLlrl~~~q~e~akl~~~~aL~~~i~f--~~~~----~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~  579 (748)
T KOG4151|consen  506 YEALLRLGQQQFEEAKLKWYHALAGKIDF--PGER----SYEVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQK  579 (748)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHhhhcCC--CCCc----hhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHH
Confidence            445555555555566666555555 1111  1111    12345555555543221 2223678899999877654 777


Q ss_pred             HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 039015          458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS  536 (685)
Q Consensus       458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~  536 (685)
                      |...-+++.|-..+-.. ++-.+..++..+.||...+ -+...|++.....+.....+..........++.++..+....
T Consensus       580 i~ke~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~  658 (748)
T KOG4151|consen  580 ILKEKALGKIEELMTEE-NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVV  658 (748)
T ss_pred             HHHHhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhcc
Confidence            88766666666666666 7888999999999998877 567777775567888887777766677777777777666655


Q ss_pred             CcHHH-HHh-cCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-hhcHHHHHhcCChHHHHH
Q 039015          537 GNHWR-FLA-AGAVPLLLNLLTSSDSEELITDSLAVLATLAEK-LDGTIAILHHGALDMIMK  595 (685)
Q Consensus       537 ~n~~~-iv~-~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~-~~~~~~i~~~g~v~~Lv~  595 (685)
                      +|+-. +.+ ......++.++ .+.+.+++...+.+..|+... .+....+.....++.+..
T Consensus       659 ~n~c~~~~~~~~~~e~~~~~i-~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~  719 (748)
T KOG4151|consen  659 ENHCSRILELLEWLEILVRAI-QDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSG  719 (748)
T ss_pred             hhhhhhHHHhhcchHHHHHhh-cCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHH
Confidence            54333 333 45567777787 677788888888888886543 333344555544444443

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=87.91  E-value=14  Score=43.58  Aligned_cols=223  Identities=11%  Similarity=0.131  Sum_probs=138.7

Q ss_pred             CCCHHHHHHHHHHhhccccCc-chhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHH
Q 039015          432 SKDSSTQENAIAALLNLSKHC-KSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPAL  510 (685)
Q Consensus       432 s~~~~~~~~A~~aL~nLs~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~L  510 (685)
                      +..+.....|.+++...+... .+...+  .-.+...+..+.....+-++..|..++..-+...-   .....++++..|
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~--~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v---l~~~~p~ild~L  535 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSSTVINPQLL--QHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV---LLSLQPMILDGL  535 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhhccchhHH--HHHHHHHHHhhccCCCCchhHHHHHHHHhccCcee---ccccchHHHHHH
Confidence            355666667777776544322 222111  11233344444444356677777777776662221   112236788899


Q ss_pred             HHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhcc-CCChhHHHHHHHHHHHHhcChhcHHHHHhcCC
Q 039015          511 VDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTS-SDSEELITDSLAVLATLAEKLDGTIAILHHGA  589 (685)
Q Consensus       511 v~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~-~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~  589 (685)
                      .++....+.++...-..+|...+..+.......++.+.|.++.++.. .+++.+...+-.++..|.....+..-. ..--
T Consensus       536 ~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m-~e~~  614 (1005)
T KOG2274|consen  536 LQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPM-QERL  614 (1005)
T ss_pred             HHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcch-HHHH
Confidence            99987777888888889999999999888888999999999998743 456777788888877776633322222 1224


Q ss_pred             hHHHHHHhhcCC---ChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHH-hcCChHHHHHHHHHHHHHHH
Q 039015          590 LDMIMKILDSCT---SRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLL-SQGSSRASKKASALIRILHE  662 (685)
Q Consensus       590 v~~Lv~lL~~~~---s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll-~~g~~~~k~~A~~lL~~l~~  662 (685)
                      +|.++.+|....   .+....-|+-+|..+.++.++.....+..  -++|++...+ ++++...-+.+...|+.+-.
T Consensus       615 iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~--~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is  689 (1005)
T KOG2274|consen  615 IPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC--YAFPAVAKITLHSDDHETLQNATECLRALIS  689 (1005)
T ss_pred             HHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH--HHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence            788888877530   24455567777777777766555444443  2355555544 44555566667666665533

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=87.79  E-value=17  Score=44.30  Aligned_cols=259  Identities=14%  Similarity=0.104  Sum_probs=143.4

Q ss_pred             CHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccC----cchhHHHHhcCcHHHH
Q 039015          392 TSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKH----CKSKSMVVESGGLDFI  467 (685)
Q Consensus       392 ~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~----~~~k~~i~~~g~i~~L  467 (685)
                      ..+.+.+|+..|+.|+....   ....---++|.++.++.++.+.+|..|+.+|..+-..    +.+-..|.-.=.+|.|
T Consensus       436 ~~~tK~~ALeLl~~lS~~i~---de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L  512 (1431)
T KOG1240|consen  436 TIQTKLAALELLQELSTYID---DEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL  512 (1431)
T ss_pred             cchhHHHHHHHHHHHhhhcc---hHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence            45678999999999986332   2233345799999999999999999999888665322    2333444445567777


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHhcCch----hHHHH--------------hhc---------CCCcHHHHHH-HhccCCH
Q 039015          468 VDMVKKGLKVEARQHAAATLFYIASIE----EYRKL--------------IGE---------NPEAIPALVD-MVRDGTD  519 (685)
Q Consensus       468 v~lL~~~~~~e~~~~Aa~~L~~Ls~~~----~~~~~--------------i~~---------~~g~i~~Lv~-lL~~~~~  519 (685)
                      -+++......-+|..=|.-|.-|+...    +.-..              ..+         -...|..+|. +|.+..+
T Consensus       513 ~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~  592 (1431)
T KOG1240|consen  513 NHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPP  592 (1431)
T ss_pred             HhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCch
Confidence            777766313333333333333332111    00000              000         0012333333 3333334


Q ss_pred             HHHHHHHHHHHHhcCCCC-cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhh
Q 039015          520 RSKKNALVAIFGLLMHSG-NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILD  598 (685)
Q Consensus       520 ~~~~~A~~aL~nLs~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~  598 (685)
                      -+|..-+..|.-||..-+ .+   -..=+++.|+..| ++.+..++..-..-+.-++..-.-+ . ++..-+|.|.+-|.
T Consensus       593 ~Vkr~Lle~i~~LC~FFGk~k---sND~iLshLiTfL-NDkDw~LR~aFfdsI~gvsi~VG~r-s-~seyllPLl~Q~lt  666 (1431)
T KOG1240|consen  593 IVKRALLESIIPLCVFFGKEK---SNDVILSHLITFL-NDKDWRLRGAFFDSIVGVSIFVGWR-S-VSEYLLPLLQQGLT  666 (1431)
T ss_pred             HHHHHHHHHHHHHHHHhhhcc---cccchHHHHHHHh-cCccHHHHHHHHhhccceEEEEeee-e-HHHHHHHHHHHhcc
Confidence            555555566766653211 00   0111467788888 6666666544333333333321111 0 23344788888787


Q ss_pred             cCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 039015          599 SCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFY  664 (685)
Q Consensus       599 ~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~  664 (685)
                      ++ .+.+...|+++|..||..+-  .++....  .++.....++-.++.=+|+.+..++....+..
T Consensus       667 D~-EE~Viv~aL~~ls~Lik~~l--l~K~~v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l  727 (1431)
T KOG1240|consen  667 DG-EEAVIVSALGSLSILIKLGL--LRKPAVK--DILQDVLPLLCHPNLWIRRAVLGIIAAIARQL  727 (1431)
T ss_pred             Cc-chhhHHHHHHHHHHHHHhcc--cchHHHH--HHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence            77 88999999999999998742  1111110  11334455666677778888777776665543

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=87.51  E-value=0.64  Score=30.82  Aligned_cols=28  Identities=25%  Similarity=0.446  Sum_probs=25.0

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHhhcccc
Q 039015          423 IPSLLKLLSSKDSSTQENAIAALLNLSK  450 (685)
Q Consensus       423 ip~Lv~lL~s~~~~~~~~A~~aL~nLs~  450 (685)
                      +|.+++++.+++++++..|+.+|.+++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            7899999999999999999999998864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=87.48  E-value=25  Score=37.62  Aligned_cols=166  Identities=11%  Similarity=0.044  Sum_probs=114.5

Q ss_pred             hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhh-cCCchhhHHHhh-C-CHHHHHHhhcCC-----C--------HHHHHH
Q 039015          377 MKLLANFISDRLLEGTSEEKNKVAYEVRLLTK-SSIFNRSCLVEV-G-CIPSLLKLLSSK-----D--------SSTQEN  440 (685)
Q Consensus       377 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~-~~~~~r~~i~~~-G-~ip~Lv~lL~s~-----~--------~~~~~~  440 (685)
                      ....+..+-+.|++........+++.|..++. .+......+... + -.+.+.+++...     +        +.++.+
T Consensus        54 L~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~  133 (330)
T PF11707_consen   54 LQNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTN  133 (330)
T ss_pred             HHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHH
Confidence            34456777788888888888889999999887 443444445443 3 345566666331     1        288888


Q ss_pred             HHHHhhccccCcc--hhHHHH-hcCcHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCch----hHHHHhhcCCCcHHHHHH
Q 039015          441 AIAALLNLSKHCK--SKSMVV-ESGGLDFIVDMVKKGLKVEARQHAAATLFY-IASIE----EYRKLIGENPEAIPALVD  512 (685)
Q Consensus       441 A~~aL~nLs~~~~--~k~~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~-Ls~~~----~~~~~i~~~~g~i~~Lv~  512 (685)
                      .+..+..+-.+.+  -+..+. ..+.+..+.+-|..+ +.++......+|.. +..++    ..|..+-. ..++..|+.
T Consensus       134 fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D-~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn-~~~L~~l~~  211 (330)
T PF11707_consen  134 FIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD-PPETVILILETLKDKVLKDSSVSRSTKCKLFN-EWTLSQLAS  211 (330)
T ss_pred             HHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCC-CHHHHHHHHHHHHHHhccCCCCChhhhhhhcC-HHHHHHHHH
Confidence            9887776655443  355555 567799999999987 89999988888874 43333    45556655 668888999


Q ss_pred             HhccCCH----HHHHHHHHHHHHhcCCCCcHHHHHh
Q 039015          513 MVRDGTD----RSKKNALVAIFGLLMHSGNHWRFLA  544 (685)
Q Consensus       513 lL~~~~~----~~~~~A~~aL~nLs~~~~n~~~iv~  544 (685)
                      +....++    .+...+-..|..+|.++.+..-.-+
T Consensus       212 Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d  247 (330)
T PF11707_consen  212 LYSRDGEDEKSSVADLVHEFLLALCTDPKHGVCFPD  247 (330)
T ss_pred             HhcccCCcccchHHHHHHHHHHHHhcCCCcccccCC
Confidence            8776555    6777888889999987765444433

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=87.43  E-value=20  Score=40.33  Aligned_cols=227  Identities=11%  Similarity=0.060  Sum_probs=132.3

Q ss_pred             hcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc-c-------------
Q 039015          388 LLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-K-------------  453 (685)
Q Consensus       388 L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~-------------  453 (685)
                      ..+.+.+.+..|..+|..+..-....-....|.-......+.+++++.++...|+.--.-++..+ +             
T Consensus       230 tq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~  309 (858)
T COG5215         230 TQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPA  309 (858)
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCch
Confidence            35567788888988888776433233334555555566667888888888888776442222111 0             


Q ss_pred             ---hhHHHHhcCcHHHHHHHhcC-C-----CCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHH
Q 039015          454 ---SKSMVVESGGLDFIVDMVKK-G-----LKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKN  524 (685)
Q Consensus       454 ---~k~~i~~~g~i~~Lv~lL~~-~-----~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~  524 (685)
                         +-.+-.-++++|.|+.+|.+ |     .+......|.+.|--.+..  ....|.+ + ++...=.-+++++-..++.
T Consensus       310 qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~--~gd~i~~-p-Vl~FvEqni~~~~w~nrea  385 (858)
T COG5215         310 QNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL--KGDKIMR-P-VLGFVEQNIRSESWANREA  385 (858)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH--hhhHhHH-H-HHHHHHHhccCchhhhHHH
Confidence               11112235688999999976 2     1334455555555444332  2233333 2 3333333556777888888


Q ss_pred             HHHHHHHhcCCCC-cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHH--HhhcCC
Q 039015          525 ALVAIFGLLMHSG-NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMK--ILDSCT  601 (685)
Q Consensus       525 A~~aL~nLs~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~--lL~~~~  601 (685)
                      |+.|+...-..+. .+..-+-..++|.+.+++ +++.--+.+.+++++..++.+-  ...|--.|-++..+.  ++..-.
T Consensus       386 avmAfGSvm~gp~~~~lT~~V~qalp~i~n~m-~D~~l~vk~ttAwc~g~iad~v--a~~i~p~~Hl~~~vsa~liGl~D  462 (858)
T COG5215         386 AVMAFGSVMHGPCEDCLTKIVPQALPGIENEM-SDSCLWVKSTTAWCFGAIADHV--AMIISPCGHLVLEVSASLIGLMD  462 (858)
T ss_pred             HHHHhhhhhcCccHHHHHhhHHhhhHHHHHhc-ccceeehhhHHHHHHHHHHHHH--HHhcCccccccHHHHHHHhhhhc
Confidence            9999887643332 222223345788888888 5666677788888888887642  222322333433333  111111


Q ss_pred             ChhHHHHHHHHHHHHhccCc
Q 039015          602 SRAGKEYCVSLLLALCINGG  621 (685)
Q Consensus       602 s~~~~e~a~~~L~~L~~~~~  621 (685)
                      .|...-++.+...+|..+-.
T Consensus       463 ~p~~~~ncsw~~~nlv~h~a  482 (858)
T COG5215         463 CPFRSINCSWRKENLVDHIA  482 (858)
T ss_pred             cchHHhhhHHHHHhHHHhhh
Confidence            66777888888888876643

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.25  E-value=0.27  Score=54.78  Aligned_cols=41  Identities=29%  Similarity=0.515  Sum_probs=33.4

Q ss_pred             CCCCCccCcCccccCC----CceeccCcccccHHHHHHHHHcCCCCCC
Q 039015          276 LTPDDFTCPISLEIMK----DPVTLSTGHTYDRASILKWFRAGNSTCP  319 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~----dPv~~~cghtfcr~ci~~~~~~~~~~CP  319 (685)
                      .+-+-+.|+||...+.    .||.+-||||.|+.|.+..+..   +||
T Consensus         7 ~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp   51 (861)
T KOG3161|consen    7 KWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCP   51 (861)
T ss_pred             hhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCC
Confidence            4556689999976665    6999999999999999987654   677

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=87.12  E-value=1.1  Score=44.78  Aligned_cols=84  Identities=20%  Similarity=0.211  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHhhccccCcchhHHHHhcC-------cHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh-HHHHhhcCCCc
Q 039015          435 SSTQENAIAALLNLSKHCKSKSMVVESG-------GLDFIVDMVKKGLKVEARQHAAATLFYIASIEE-YRKLIGENPEA  506 (685)
Q Consensus       435 ~~~~~~A~~aL~nLs~~~~~k~~i~~~g-------~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~~g~  506 (685)
                      ..-|..|+.+|+.|+..+.|-+.|..-+       .+..|+++|....+.-.|+.|+.+|.+|+..++ ....++...++
T Consensus       138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            3578999999999999999987776433       344555556555488999999999999998874 44467766899


Q ss_pred             HHHHHHHhccCC
Q 039015          507 IPALVDMVRDGT  518 (685)
Q Consensus       507 i~~Lv~lL~~~~  518 (685)
                      |..|+..+.+..
T Consensus       218 i~~Li~FiE~a~  229 (257)
T PF12031_consen  218 ISHLIAFIEDAE  229 (257)
T ss_pred             HHHHHHHHHHHH
Confidence            999999997643

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=86.99  E-value=8.2  Score=38.23  Aligned_cols=193  Identities=19%  Similarity=0.168  Sum_probs=118.9

Q ss_pred             cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhh-CCHHHHHH-------hhcC-----CCHHHHHHHHHHhhccccCcchh
Q 039015          389 LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEV-GCIPSLLK-------LLSS-----KDSSTQENAIAALLNLSKHCKSK  455 (685)
Q Consensus       389 ~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~-G~ip~Lv~-------lL~s-----~~~~~~~~A~~aL~nLs~~~~~k  455 (685)
                      -.|++.++  |+.+|..=-+..++-.-.+-.. |....|++       +|+.     ....-..+|+.+|.-++.+++.|
T Consensus        57 v~g~~kEq--aL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQclaShPetk  134 (315)
T COG5209          57 VVGNPKEQ--ALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQCLASHPETK  134 (315)
T ss_pred             hcCCHHHH--HHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHHHhcCcchh
Confidence            45666555  6666544333344433333333 44444443       3322     22344567888888999999999


Q ss_pred             HHHHhcCcHHHHHHHhcCC----CCHHHHHHHHHHHHHhcCch--hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHH
Q 039015          456 SMVVESGGLDFIVDMVKKG----LKVEARQHAAATLFYIASIE--EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAI  529 (685)
Q Consensus       456 ~~i~~~g~i~~Lv~lL~~~----~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL  529 (685)
                      ..++++..--.|-..|...    .-.-.|..+.+++..|..++  +.-..+-. ..+||.+++++..|+.-.+..|+..+
T Consensus       135 ~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLlt-TeivPLcLrIme~gSElSktvaifI~  213 (315)
T COG5209         135 KVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLT-TEIVPLCLRIMELGSELSKTVAIFIF  213 (315)
T ss_pred             eeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHh-hhHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            9999877655555555422    12345788999999998877  33334444 88999999999999988888888777


Q ss_pred             HHhcCCCCcHHHHHh----cCChHH----HHHHhccCCChhHHHHHHHHHHHHhcChhcHHHH
Q 039015          530 FGLLMHSGNHWRFLA----AGAVPL----LLNLLTSSDSEELITDSLAVLATLAEKLDGTIAI  584 (685)
Q Consensus       530 ~nLs~~~~n~~~iv~----~G~v~~----Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i  584 (685)
                      ..+-.++..-+.+.+    --+|..    ++.-+-+.....+...++.+-..|+..+..|..+
T Consensus       214 qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL  276 (315)
T COG5209         214 QKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALL  276 (315)
T ss_pred             HHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHH
Confidence            777666654333322    112222    2222223345566677777777777777766654

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=86.70  E-value=0.86  Score=30.20  Aligned_cols=29  Identities=14%  Similarity=0.285  Sum_probs=25.3

Q ss_pred             cHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015          506 AIPALVDMVRDGTDRSKKNALVAIFGLLM  534 (685)
Q Consensus       506 ~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  534 (685)
                      .+|.+++++.+++++++..|+.+|.+++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            37899999999999999999999998864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=86.61  E-value=31  Score=34.87  Aligned_cols=130  Identities=15%  Similarity=0.025  Sum_probs=80.1

Q ss_pred             cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHH
Q 039015          389 LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIV  468 (685)
Q Consensus       389 ~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv  468 (685)
                      +..+++.+...++.|..++.++..+...+     +..|..+...+....+--+...+..+...++---     +.+..++
T Consensus        11 ~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-----~~L~~~L   80 (234)
T PF12530_consen   11 KISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-----PFLQPLL   80 (234)
T ss_pred             CCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-----HHHHHHH
Confidence            45678889999999999997541222222     3345555555555555556666666654433211     3344333


Q ss_pred             HH-----h---c-CCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHh-ccCCHHHHHHHHHHHHHhc
Q 039015          469 DM-----V---K-KGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMV-RDGTDRSKKNALVAIFGLL  533 (685)
Q Consensus       469 ~l-----L---~-~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs  533 (685)
                      ..     .   . .....+.....++.+..++....+    .. ...++.+..+| ++.++..+..|+.+|..||
T Consensus        81 ~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g-~~ll~~ls~~L~~~~~~~~~alale~l~~Lc  150 (234)
T PF12530_consen   81 LLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HG-VDLLPLLSGCLNQSCDEVAQALALEALAPLC  150 (234)
T ss_pred             HHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            33     1   1 111345555556777777766655    11 34788888888 7777888999999999998

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=86.57  E-value=17  Score=41.33  Aligned_cols=122  Identities=19%  Similarity=0.220  Sum_probs=78.2

Q ss_pred             CCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc-chhHHHHhcCcHHHHH
Q 039015          390 EGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-KSKSMVVESGGLDFIV  468 (685)
Q Consensus       390 s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~k~~i~~~g~i~~Lv  468 (685)
                      .++..++.-|+.-|....+.-++.....     |..+++|..+.|..++..|+..|-.++.+. +.-.+|     +..|+
T Consensus        33 kg~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~  102 (556)
T PF05918_consen   33 KGSPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLV  102 (556)
T ss_dssp             GS-HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHH
Confidence            4778889889999988888777766544     668999999999999999999999999874 344444     67899


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhc---cCCHHHHHHHHHHHH
Q 039015          469 DMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR---DGTDRSKKNALVAIF  530 (685)
Q Consensus       469 ~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~---~~~~~~~~~A~~aL~  530 (685)
                      ++|... +......+-.+|..|-..+ .+..       +..|+.-+.   ++++.++..++..|.
T Consensus       103 QlL~td-d~~E~~~v~~sL~~ll~~d-~k~t-------L~~lf~~i~~~~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen  103 QLLQTD-DPVELDAVKNSLMSLLKQD-PKGT-------LTGLFSQIESSKSGDEQVRERALKFLR  158 (556)
T ss_dssp             HHTT----HHHHHHHHHHHHHHHHH--HHHH-------HHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred             HHHhcc-cHHHHHHHHHHHHHHHhcC-cHHH-------HHHHHHHHHhcccCchHHHHHHHHHHH
Confidence            999987 6555555555565553322 2332       333444443   567777888777664

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.47  E-value=18  Score=44.04  Aligned_cols=230  Identities=18%  Similarity=0.199  Sum_probs=125.5

Q ss_pred             cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhh--CCHHHHHHhhcCCCHHHHHHHHHHhhccccCc--chhHHHHhcCcH
Q 039015          389 LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEV--GCIPSLLKLLSSKDSSTQENAIAALLNLSKHC--KSKSMVVESGGL  464 (685)
Q Consensus       389 ~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~--G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~--~~k~~i~~~g~i  464 (685)
                      ++.+..+|.++.+.|..++.. +.........  ..-..|.+-..+....++..++.+|..|-..-  +....+. . .|
T Consensus       664 ~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~-k-~I  740 (1176)
T KOG1248|consen  664 NSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP-K-LI  740 (1176)
T ss_pred             ccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH-H-HH
Confidence            445788999999999999874 2222222211  11122333333445556666666665554322  2333332 2 24


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcC--CCcHHHHHHHhccC---C-HHHHHHHHHHHHHhcCCCCc
Q 039015          465 DFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGEN--PEAIPALVDMVRDG---T-DRSKKNALVAIFGLLMHSGN  538 (685)
Q Consensus       465 ~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~--~g~i~~Lv~lL~~~---~-~~~~~~A~~aL~nLs~~~~n  538 (685)
                      +-++-.++.- +...|.+|-.+|..+..... ....|.+  ...|...+..+..|   + ...+...+.++..+.....+
T Consensus       741 ~EvIL~~Ke~-n~~aR~~Af~lL~~i~~i~~-~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~  818 (1176)
T KOG1248|consen  741 PEVILSLKEV-NVKARRNAFALLVFIGAIQS-SLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKN  818 (1176)
T ss_pred             HHHHHhcccc-cHHHHhhHHHHHHHHHHHHh-hhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc
Confidence            4444444555 88999999999999873110 0011110  12566666666544   2 22222225555555433222


Q ss_pred             HHHHHhcC----ChHHHHHHhccCCChhHHHHHHHHHHHHhcC-hhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHH
Q 039015          539 HWRFLAAG----AVPLLLNLLTSSDSEELITDSLAVLATLAEK-LDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLL  613 (685)
Q Consensus       539 ~~~iv~~G----~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~-~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L  613 (685)
                         +++.+    .+..+...| .+.+..+...|++.+..+... |+..-.--...-++.+..+++.+ +...+-..-..|
T Consensus       819 ---~ld~~~l~~li~~V~~~L-~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~Ll  893 (1176)
T KOG1248|consen  819 ---ILDDETLEKLISMVCLYL-ASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLLL  893 (1176)
T ss_pred             ---cccHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHHH
Confidence               22333    334444455 577899999999999988764 44332221212366677777666 667777777777


Q ss_pred             HHHhccCcHHHHHHH
Q 039015          614 LALCINGGANVVALL  628 (685)
Q Consensus       614 ~~L~~~~~~~~~~~l  628 (685)
                      -.|+...+.+..+.+
T Consensus       894 ekLirkfg~~eLe~~  908 (1176)
T KOG1248|consen  894 EKLIRKFGAEELESF  908 (1176)
T ss_pred             HHHHHHhCHHHHHhh
Confidence            777776554444433

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=86.46  E-value=26  Score=38.02  Aligned_cols=235  Identities=15%  Similarity=0.173  Sum_probs=132.3

Q ss_pred             HHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC-CCH-HHHHHHHHHhhccccCcchh
Q 039015          379 LLANFISDRLLE-GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS-KDS-STQENAIAALLNLSKHCKSK  455 (685)
Q Consensus       379 ~~i~~Lv~~L~s-~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s-~~~-~~~~~A~~aL~nLs~~~~~k  455 (685)
                      ..+..++..|.+ .+...|+.++-.|..-+. ++.-|..+...|.+..+++.+.. ++. ...-.++.++.-|+.+..+-
T Consensus        21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~   99 (361)
T PF07814_consen   21 DEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM   99 (361)
T ss_pred             HHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch
Confidence            347888888874 345678888888877776 77889999999999999998844 443 44445555666667666666


Q ss_pred             HHHHhcCcHHHHHHHhcCCCCHHHHHHHH-HHHHHhcCchhHHHHhhcCCCcHHHHHHHhc---------cCCHHHHHHH
Q 039015          456 SMVVESGGLDFIVDMVKKGLKVEARQHAA-ATLFYIASIEEYRKLIGENPEAIPALVDMVR---------DGTDRSKKNA  525 (685)
Q Consensus       456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa-~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~---------~~~~~~~~~A  525 (685)
                      ..+.+.+.+..++.++.-....+.....- .-=.+++.       +.+  ..+..+..++.         ......+.-|
T Consensus       100 ~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk-------~~~--~~~~~~~~~~~~~~~~~~~~~~~lsp~~la  170 (361)
T PF07814_consen  100 HLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSK-------VQQ--KSRSLCKELLSSGSSWKSPKPPELSPQTLA  170 (361)
T ss_pred             hhhhchhHHHHHHHHhccccccccccchhhhhhhhhhH-------HHH--HHHHHHHHHHhccccccccCCcccccccHH
Confidence            66667778888888887110000000000 00001110       000  01111111110         0112233345


Q ss_pred             HHHHHHhc--------------C-CCCcHHHHHhcCChHHHHHHhcc----C-----------CChhHHHHHHHHHHHHh
Q 039015          526 LVAIFGLL--------------M-HSGNHWRFLAAGAVPLLLNLLTS----S-----------DSEELITDSLAVLATLA  575 (685)
Q Consensus       526 ~~aL~nLs--------------~-~~~n~~~iv~~G~v~~Lv~lL~~----~-----------~~~~~~~~al~~L~~La  575 (685)
                      +.+|-.++              . .+-.+..+..-|++..++.++..    .           .+-.....++.+|-+..
T Consensus       171 ll~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T  250 (361)
T PF07814_consen  171 LLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVT  250 (361)
T ss_pred             HHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHH
Confidence            55555552              1 11246777888899999998841    0           01235567888888876


Q ss_pred             c-ChhcHHHHHhcC--ChHHHHH-HhhcC--CChhHHHHHHHHHHHHhccCcHH
Q 039015          576 E-KLDGTIAILHHG--ALDMIMK-ILDSC--TSRAGKEYCVSLLLALCINGGAN  623 (685)
Q Consensus       576 ~-~~~~~~~i~~~g--~v~~Lv~-lL~~~--~s~~~~e~a~~~L~~L~~~~~~~  623 (685)
                      . +.+++.......  .++.+.. +++..  ..+.....++.+|.|++.+++..
T Consensus       251 ~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~  304 (361)
T PF07814_consen  251 FLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSA  304 (361)
T ss_pred             hcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccc
Confidence            5 355555554433  2333333 44332  02333467899999999887543

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=86.11  E-value=1.9  Score=46.97  Aligned_cols=184  Identities=14%  Similarity=0.135  Sum_probs=119.1

Q ss_pred             CCHHHHHHHHHHhhccccCcchh-HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-----chh---HHHHh-hc
Q 039015          433 KDSSTQENAIAALLNLSKHCKSK-SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIAS-----IEE---YRKLI-GE  502 (685)
Q Consensus       433 ~~~~~~~~A~~aL~nLs~~~~~k-~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-----~~~---~~~~i-~~  502 (685)
                      ++.-+...|++++..+..|+..+ ..+.-..+...+...|... .-..|+.+++++.+++.     .+.   ..+.+ |.
T Consensus       403 ~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~  481 (728)
T KOG4535|consen  403 KNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL  481 (728)
T ss_pred             HHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH
Confidence            44456777888888888887664 4555677888888888776 67889999999999863     111   12222 11


Q ss_pred             CCCcHHHHHHHhc---cCCHHHHHHHHHHHHHhcCCC----CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHh
Q 039015          503 NPEAIPALVDMVR---DGTDRSKKNALVAIFGLLMHS----GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLA  575 (685)
Q Consensus       503 ~~g~i~~Lv~lL~---~~~~~~~~~A~~aL~nLs~~~----~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La  575 (685)
                         .+..++..-.   ..+++++.+|..+|.|++..-    +-....+..|.+..++.-.-......++.+|+-++.||-
T Consensus       482 ---ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLf  558 (728)
T KOG4535|consen  482 ---LLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLF  558 (728)
T ss_pred             ---HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhh
Confidence               2333333221   234688889999999997421    111222333444444443323456889999999999999


Q ss_pred             cChhcHHHH-HhcC-ChHHHHHHhhcCCChhHHHHHHHHHHHHhccC
Q 039015          576 EKLDGTIAI-LHHG-ALDMIMKILDSCTSRAGKEYCVSLLLALCING  620 (685)
Q Consensus       576 ~~~~~~~~i-~~~g-~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~  620 (685)
                      +++.-+-+= --++ ..+.|..++.+..+-.++-+|+++|..-....
T Consensus       559 kn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re  605 (728)
T KOG4535|consen  559 KNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKRE  605 (728)
T ss_pred             cCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCcc
Confidence            987653221 1122 36888888887768899999999998766543

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=86.00  E-value=44  Score=38.93  Aligned_cols=97  Identities=18%  Similarity=0.202  Sum_probs=67.4

Q ss_pred             CCcHHHHHHH-hccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHH
Q 039015          504 PEAIPALVDM-VRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTI  582 (685)
Q Consensus       504 ~g~i~~Lv~l-L~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~  582 (685)
                      .++|..|++. +.+++++++..|+.+|.=++..+.+        ..+..|.+|..+.++.++-.++.+|...|.....+.
T Consensus       553 nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e  624 (929)
T KOG2062|consen  553 NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE  624 (929)
T ss_pred             hhhHHHhhcccccccchHHHHHHHHHheeeEecChh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH
Confidence            5678888887 5678899999999999777655443        256678888666788999888888887777655555


Q ss_pred             HHHhcCChHHHHH-HhhcCCChhHHHHHHHHHHHH
Q 039015          583 AILHHGALDMIMK-ILDSCTSRAGKEYCVSLLLAL  616 (685)
Q Consensus       583 ~i~~~g~v~~Lv~-lL~~~~s~~~~e~a~~~L~~L  616 (685)
                      +|      . |++ ++.+. ..-+++-|+-++..+
T Consensus       625 Ai------~-lLepl~~D~-~~fVRQgAlIa~amI  651 (929)
T KOG2062|consen  625 AI------N-LLEPLTSDP-VDFVRQGALIALAMI  651 (929)
T ss_pred             HH------H-HHhhhhcCh-HHHHHHHHHHHHHHH
Confidence            54      1 233 44443 556666666665554

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=85.89  E-value=38  Score=40.25  Aligned_cols=227  Identities=14%  Similarity=0.102  Sum_probs=136.5

Q ss_pred             CCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhc-CCCHHHHHHHHHHhhccccCcchhHHHH--hcCcHHH
Q 039015          390 EGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLS-SKDSSTQENAIAALLNLSKHCKSKSMVV--ESGGLDF  466 (685)
Q Consensus       390 s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~-s~~~~~~~~A~~aL~nLs~~~~~k~~i~--~~g~i~~  466 (685)
                      +..+..-.+|...+...++....+...+..  .+-..+..+. +..+-++..|+.++..-.    ....+.  ..+.++.
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~----~~~vl~~~~p~ild~  534 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYC----KVKVLLSLQPMILDG  534 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhcc----CceeccccchHHHHH
Confidence            345555567777777666543333322211  1122233332 234556667777665554    222222  4788889


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhc--cCCHHHHHHHHHHHHHhcCCCCcHHHHHh
Q 039015          467 IVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR--DGTDRSKKNALVAIFGLLMHSGNHWRFLA  544 (685)
Q Consensus       467 Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~~A~~aL~nLs~~~~n~~~iv~  544 (685)
                      |.++.... +.++......+|...+..+.-...-.+ ....|..+.+..  +.+|.+...+-..+-.|+....|...+.+
T Consensus       535 L~qlas~~-s~evl~llmE~Ls~vv~~dpef~as~~-skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e  612 (1005)
T KOG2274|consen  535 LLQLASKS-SDEVLVLLMEALSSVVKLDPEFAASME-SKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE  612 (1005)
T ss_pred             HHHHcccc-cHHHHHHHHHHHHHHhccChhhhhhhh-cchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH
Confidence            99988877 888888888999888776643333333 456676666553  34566666666666666654444444433


Q ss_pred             cCChHHHHHHhccCC---ChhHHHHHHHHHHHHhcC-hhcHHHHHhcCChHHHHH-HhhcCCChhHHHHHHHHHHHHhcc
Q 039015          545 AGAVPLLLNLLTSSD---SEELITDSLAVLATLAEK-LDGTIAILHHGALDMIMK-ILDSCTSRAGKEYCVSLLLALCIN  619 (685)
Q Consensus       545 ~G~v~~Lv~lL~~~~---~~~~~~~al~~L~~La~~-~~~~~~i~~~g~v~~Lv~-lL~~~~s~~~~e~a~~~L~~L~~~  619 (685)
                       -.+|.|+..|....   ...+..-++.+|..+... +.--....-.-+.|++.+ .++++ ....-.++-.+|..+...
T Consensus       613 -~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsd-D~~tlQ~~~EcLra~Is~  690 (1005)
T KOG2274|consen  613 -RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSD-DHETLQNATECLRALISV  690 (1005)
T ss_pred             -HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecC-ChHHHHhHHHHHHHHHhc
Confidence             36899999995322   367788888888866553 221111112235688888 56665 777888888888888877


Q ss_pred             CcHHHHH
Q 039015          620 GGANVVA  626 (685)
Q Consensus       620 ~~~~~~~  626 (685)
                      +.+++..
T Consensus       691 ~~eq~~t  697 (1005)
T KOG2274|consen  691 TLEQLLT  697 (1005)
T ss_pred             CHHHHHh
Confidence            6555433

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=85.31  E-value=2  Score=38.41  Aligned_cols=71  Identities=15%  Similarity=0.196  Sum_probs=53.2

Q ss_pred             ChHHHHHHhccCCChhHHHHHHHHHHHHhc-ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 039015          547 AVPLLLNLLTSSDSEELITDSLAVLATLAE-KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCI  618 (685)
Q Consensus       547 ~v~~Lv~lL~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~  618 (685)
                      ++..|+++|..+.++....-|+-=|..++. .|.|+..+-+.|+=..++++|.+. ++.++..|+.++..+-.
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~-d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE-DPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S-SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            466799999544455566666666777766 588999888888888889999997 99999999999877654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.23  E-value=84  Score=36.82  Aligned_cols=179  Identities=13%  Similarity=0.133  Sum_probs=102.0

Q ss_pred             CHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHh
Q 039015          392 TSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMV  471 (685)
Q Consensus       392 ~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL  471 (685)
                      ++..|.-.++.|+..+..++.-+..     .|..+..+|.+.++.+.-.|...|.+||.++..-..-     ...++.++
T Consensus       219 ~~~LqlViVE~Irkv~~~~p~~~~~-----~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~A-----a~~~i~l~  288 (948)
T KOG1058|consen  219 NDSLQLVIVELIRKVCLANPAEKAR-----YIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAA-----ASTYIDLL  288 (948)
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHhhH-----HHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHH-----HHHHHHHH
Confidence            4666777788888888755554444     4668889999999999999999999998766442111     12223333


Q ss_pred             cCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHH
Q 039015          472 KKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLL  551 (685)
Q Consensus       472 ~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~L  551 (685)
                      -+..+..++.-..--|..|.   ..-+.|.  .|.+--.+.+|..++-++++.++...+.|+....          +.-+
T Consensus       289 ~kesdnnvklIvldrl~~l~---~~~~~il--~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN----------vedi  353 (948)
T KOG1058|consen  289 VKESDNNVKLIVLDRLSELK---ALHEKIL--QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN----------VEDI  353 (948)
T ss_pred             HhccCcchhhhhHHHHHHHh---hhhHHHH--HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc----------HHHH
Confidence            22212222222222222222   2222332  3466667778888888899989988888865443          2222


Q ss_pred             HHHhc----------cCCChhHHHHHHHHHHHHhcC-hhcHHHHHhcCChHHHHHHhhcC
Q 039015          552 LNLLT----------SSDSEELITDSLAVLATLAEK-LDGTIAILHHGALDMIMKILDSC  600 (685)
Q Consensus       552 v~lL~----------~~~~~~~~~~al~~L~~La~~-~~~~~~i~~~g~v~~Lv~lL~~~  600 (685)
                      +.+|+          ++.+...+..-+..++..|.. ++...     ..|+.|++.+.+.
T Consensus       354 v~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aa-----tvV~~ll~fisD~  408 (948)
T KOG1058|consen  354 VQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAA-----TVVSLLLDFISDS  408 (948)
T ss_pred             HHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHH-----HHHHHHHHHhccC
Confidence            33332          122344455556666666543 33332     2356677766554

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=85.20  E-value=31  Score=40.91  Aligned_cols=192  Identities=17%  Similarity=0.185  Sum_probs=125.3

Q ss_pred             hhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcc
Q 039015          375 GAMKLLANFISDRLL-EGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCK  453 (685)
Q Consensus       375 ~~~~~~i~~Lv~~L~-s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~  453 (685)
                      ...+..+..+.+.+. ...+.++..++..+.++++.-   .......+.+|.+..++..+...+++.|+..+.++...-+
T Consensus       232 ~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~---~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~  308 (759)
T KOG0211|consen  232 DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVL---ESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLD  308 (759)
T ss_pred             HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHH---HHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcC
Confidence            344555666666664 456677788888888888633   2377888999999999998888999999988887754322


Q ss_pred             hhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 039015          454 SKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLL  533 (685)
Q Consensus       454 ~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs  533 (685)
                      ... =...-..+.++...+.+ +...+...+.....|+..=+-  ..+. ..-+++...+++....+++..++.=..-++
T Consensus       309 ~~~-d~~~~~~~~l~~~~~d~-~~~v~~~~~~~~~~L~~~~~~--~~~~-~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~  383 (759)
T KOG0211|consen  309 DDD-DVVKSLTESLVQAVEDG-SWRVSYMVADKFSELSSAVGP--SATR-TQLVPPVSNLLKDEEWEVRYAIAKKVQKLA  383 (759)
T ss_pred             Cch-hhhhhhhHHHHHHhcCh-hHHHHHHHhhhhhhHHHHhcc--ccCc-ccchhhHHHHhcchhhhhhHHhhcchHHHh
Confidence            211 12244577888888888 778887777777777542222  3444 556778888877655555554444333333


Q ss_pred             --CCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHh
Q 039015          534 --MHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLA  575 (685)
Q Consensus       534 --~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La  575 (685)
                        .+.+....+....++|.+-.+. .+.+..+....+.....++
T Consensus       384 ~~l~~~~~~~i~~~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~  426 (759)
T KOG0211|consen  384 CYLNASCYPNIPDSSILPEVQVLV-LDNALHVRSALASVITGLS  426 (759)
T ss_pred             hhcCcccccccchhhhhHHHHHHH-hcccchHHHHHhccccccC
Confidence              3334555666666677777776 5666666666665555553

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=85.08  E-value=16  Score=40.51  Aligned_cols=129  Identities=16%  Similarity=0.169  Sum_probs=81.7

Q ss_pred             cHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CC--------cHHHHHhcC----ChHHHHHHhccCCChhHHHHHHHHHH
Q 039015          506 AIPALVDMVRDGTDRSKKNALVAIFGLLMH-SG--------NHWRFLAAG----AVPLLLNLLTSSDSEELITDSLAVLA  572 (685)
Q Consensus       506 ~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~--------n~~~iv~~G----~v~~Lv~lL~~~~~~~~~~~al~~L~  572 (685)
                      .+..|+.+|.+  ++....|+.++.-|..+ ++        +...+.+..    ++|.|++-.. ..+...+...+.+|.
T Consensus       272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~-~~~~~~k~~yL~ALs  348 (415)
T PF12460_consen  272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFK-EADDEIKSNYLTALS  348 (415)
T ss_pred             HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHh-hcChhhHHHHHHHHH
Confidence            46677777765  55566778887777666 22        222233332    5677777763 344457788888888


Q ss_pred             HHhcChhcHHHHHhcCC-hHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHH
Q 039015          573 TLAEKLDGTIAILHHGA-LDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSL  641 (685)
Q Consensus       573 ~La~~~~~~~~i~~~g~-v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~L  641 (685)
                      ++..+-....-.-+.+. +|.|++-|... ++.++..++.+|..+....++-+...+.   .+++.|+.+
T Consensus       349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~~~~~i~~hl~---sLI~~LL~l  414 (415)
T PF12460_consen  349 HLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILEEAPELISEHLS---SLIPRLLKL  414 (415)
T ss_pred             HHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHcCHHHHHHHHH---HHHHHHHhc
Confidence            88775332222233333 78888888776 8889999999999999887444433332   345555543

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=84.98  E-value=0.27  Score=59.24  Aligned_cols=49  Identities=24%  Similarity=0.373  Sum_probs=42.5

Q ss_pred             CCCCCccCcCccccCC-CceeccCcccccHHHHHHHHHcCCCCCCCCCccc
Q 039015          276 LTPDDFTCPISLEIMK-DPVTLSTGHTYDRASILKWFRAGNSTCPKTGERL  325 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~-dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l  325 (685)
                      ..-..+.|+||++.++ .-.+.-|||.||..|+..|... +..||+|....
T Consensus      1149 ~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1149 NLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICKSIK 1198 (1394)
T ss_pred             HhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchhhhh
Confidence            5566789999999999 6778899999999999999997 78899997433

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=84.89  E-value=24  Score=36.36  Aligned_cols=136  Identities=21%  Similarity=0.189  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHhhccccCcc--------hhHHHHhcCcHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCchh--HHHHh
Q 039015          435 SSTQENAIAALLNLSKHCK--------SKSMVVESGGLDFIVDMVKKGLK----VEARQHAAATLFYIASIEE--YRKLI  500 (685)
Q Consensus       435 ~~~~~~A~~aL~nLs~~~~--------~k~~i~~~g~i~~Lv~lL~~~~~----~e~~~~Aa~~L~~Ls~~~~--~~~~i  500 (685)
                      ....+.++..|..|+..++        +|-.+.=-+.+|-+++.+..+ +    ......+|..|..++....  +-..+
T Consensus        76 s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~-~~i~~~~~~~~~A~~La~~a~~~~~~~La~i  154 (262)
T PF14225_consen   76 SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDP-NPIQPDQECIEIAEALAQVAEAQGLPNLARI  154 (262)
T ss_pred             CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhccc-ccccccHHHHHHHHHHHHHHHhCCCccHHHH
Confidence            4456666666666654432        344444456677788888777 4    2444566677777764321  11111


Q ss_pred             h-----------------------c------CCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHH
Q 039015          501 G-----------------------E------NPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLL  551 (685)
Q Consensus       501 ~-----------------------~------~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~L  551 (685)
                      .                       +      ....+-.|+++|.++.+..+...+..|+.|-.+-+.+.. ..++.+.+|
T Consensus       155 l~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispl  233 (262)
T PF14225_consen  155 LSSYAKGRFRDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGADLISPL  233 (262)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchHHHHHH
Confidence            0                       0      134566788888899899999999999998877665433 566689999


Q ss_pred             HHHhccCCChhHHHHHHHHHHHHhc
Q 039015          552 LNLLTSSDSEELITDSLAVLATLAE  576 (685)
Q Consensus       552 v~lL~~~~~~~~~~~al~~L~~La~  576 (685)
                      +++|.    .+...+|+.+|.+...
T Consensus       234 lrlL~----t~~~~eAL~VLd~~v~  254 (262)
T PF14225_consen  234 LRLLQ----TDLWMEALEVLDEIVT  254 (262)
T ss_pred             HHHhC----CccHHHHHHHHHHHHh
Confidence            99994    3456778888876643

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=84.83  E-value=3  Score=41.23  Aligned_cols=99  Identities=14%  Similarity=0.182  Sum_probs=74.7

Q ss_pred             hhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcC----CChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHH
Q 039015          561 EELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSC----TSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMG  636 (685)
Q Consensus       561 ~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~----~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~  636 (685)
                      ..-...|+.+|..++++|+.+..++++-.---+-..|...    .-...+-.+++++..|..++++.+...+.. ..++|
T Consensus       114 snRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLlt-TeivP  192 (315)
T COG5209         114 SNRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLT-TEIVP  192 (315)
T ss_pred             hhHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHh-hhHHH
Confidence            3455779999999999999999998866421222233322    123455689999999999998998888887 88999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHH
Q 039015          637 SLYSLLSQGSSRASKKASALIRIL  660 (685)
Q Consensus       637 ~L~~Ll~~g~~~~k~~A~~lL~~l  660 (685)
                      .++.++..|++--|.-|.-++..+
T Consensus       193 LcLrIme~gSElSktvaifI~qki  216 (315)
T COG5209         193 LCLRIMELGSELSKTVAIFIFQKI  216 (315)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHH
Confidence            999999999988777776665544

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=84.78  E-value=23  Score=39.22  Aligned_cols=185  Identities=22%  Similarity=0.240  Sum_probs=115.3

Q ss_pred             HHHHHHHHh-cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhh-cCCCHHHHHHHHHHhhccccCcchhHH
Q 039015          380 LANFISDRL-LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLL-SSKDSSTQENAIAALLNLSKHCKSKSM  457 (685)
Q Consensus       380 ~i~~Lv~~L-~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL-~s~~~~~~~~A~~aL~nLs~~~~~k~~  457 (685)
                      .+..++... .+.++..+..+++.+..+...-+.  .... ...+..+..-+ ...+...+..++.++.-++     |..
T Consensus       190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~--~~~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~-----KaL  261 (415)
T PF12460_consen  190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPD--DDDL-DEFLDSLLQSISSSEDSELRPQALEILIWIT-----KAL  261 (415)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCC--hhhH-HHHHHHHHhhhcccCCcchhHHHHHHHHHHH-----HHH
Confidence            456666665 444577888888888888743111  1111 12233333333 2334444555555444333     333


Q ss_pred             HH-----hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc-hh-------------HHHHhhcCCCcHHHHHHHhccCC
Q 039015          458 VV-----ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASI-EE-------------YRKLIGENPEAIPALVDMVRDGT  518 (685)
Q Consensus       458 i~-----~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~-~~-------------~~~~i~~~~g~i~~Lv~lL~~~~  518 (685)
                      ++     ....+..++.+|.+   .+....|+..+.-|..+ ++             +|.++..  ..+|.|++-.+..+
T Consensus       262 v~R~~~~~~~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~--~~~p~L~~~~~~~~  336 (415)
T PF12460_consen  262 VMRGHPLATELLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT--QVLPKLLEGFKEAD  336 (415)
T ss_pred             HHcCCchHHHHHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH--HHHHHHHHHHhhcC
Confidence            33     12346667777765   46677788887777665 33             2444442  36888888888777


Q ss_pred             HHHHHHHHHHHHHhcCCCCcHHHHHh-cCChHHHHHHhccCCChhHHHHHHHHHHHHhcCh
Q 039015          519 DRSKKNALVAIFGLLMHSGNHWRFLA-AGAVPLLLNLLTSSDSEELITDSLAVLATLAEKL  578 (685)
Q Consensus       519 ~~~~~~A~~aL~nLs~~~~n~~~iv~-~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~  578 (685)
                      ...+.+-+.||.++..+-+....+-+ ...+|.|++-| +-++.++...++.+|..+..+.
T Consensus       337 ~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL-~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  337 DEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSL-SLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             hhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHcC
Confidence            77888999999999887664433333 34788889999 6677789999999999887754

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=84.59  E-value=3  Score=49.05  Aligned_cols=184  Identities=20%  Similarity=0.192  Sum_probs=115.0

Q ss_pred             HHHHhhcCCCHHHHHHHHHHhhccccCcch---hH------HHHh----cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 039015          425 SLLKLLSSKDSSTQENAIAALLNLSKHCKS---KS------MVVE----SGGLDFIVDMVKKGLKVEARQHAAATLFYIA  491 (685)
Q Consensus       425 ~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~---k~------~i~~----~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls  491 (685)
                      .++.+|++  +++-..|+.++--+..|...   |.      .+..    ...+|.+++..... +...+.+=..+|.+.-
T Consensus       819 klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~-~~~~K~~yl~~LshVl  895 (1030)
T KOG1967|consen  819 KLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETA-PGSQKHNYLEALSHVL  895 (1030)
T ss_pred             HHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccC-CccchhHHHHHHHHHH
Confidence            34455543  45555566666555444321   11      1112    46788888888855 6677777777787775


Q ss_pred             CchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCC--hhHHHHHHH
Q 039015          492 SIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDS--EELITDSLA  569 (685)
Q Consensus       492 ~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~--~~~~~~al~  569 (685)
                      .+-.....+-..+...|.|++.|.-++..++..++.+|..+....+.-..---.-.||.++.+=.+.++  ..+++.|+.
T Consensus       896 ~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALq  975 (1030)
T KOG1967|consen  896 TNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQ  975 (1030)
T ss_pred             hcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHH
Confidence            533333334444567888888888888888888888888776443322222222357777776522222  678899999


Q ss_pred             HHHHHhc-ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHH
Q 039015          570 VLATLAE-KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSL  612 (685)
Q Consensus       570 ~L~~La~-~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~  612 (685)
                      +|..|.. .|...-.-.+-..+..|...|.+. .+.+++.|+.+
T Consensus       976 cL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~t 1018 (1030)
T KOG1967|consen  976 CLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDT 1018 (1030)
T ss_pred             HHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHH
Confidence            9999988 444333333334577788888876 77788888765

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=84.34  E-value=0.44  Score=50.08  Aligned_cols=46  Identities=15%  Similarity=0.393  Sum_probs=37.3

Q ss_pred             CCCCccCcCccccCC-Cce---eccCcccccHHHHHHHHH-cCCCCCCCCC
Q 039015          277 TPDDFTCPISLEIMK-DPV---TLSTGHTYDRASILKWFR-AGNSTCPKTG  322 (685)
Q Consensus       277 ~~~~~~CpIc~~~m~-dPv---~~~cghtfcr~ci~~~~~-~~~~~CP~c~  322 (685)
                      -+-++.|..|++.+- .|-   .+||.|.|.-.|++.++. .+..+||.|+
T Consensus       362 ~e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Cr  412 (518)
T KOG1941|consen  362 EETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCR  412 (518)
T ss_pred             HHHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHH
Confidence            345689999998775 333   359999999999999996 4678999998

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=84.17  E-value=38  Score=38.27  Aligned_cols=108  Identities=18%  Similarity=0.026  Sum_probs=66.6

Q ss_pred             HHHHHHHHhcCCC----HHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchh
Q 039015          380 LANFISDRLLEGT----SEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSK  455 (685)
Q Consensus       380 ~i~~Lv~~L~s~~----~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k  455 (685)
                      +.-.|++.+.++.    ......-++.+..+.+.+++.+..+     .|.|-.-|++.-..++..++++++.++...-+-
T Consensus       224 a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~  298 (898)
T COG5240         224 AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEENVGS  298 (898)
T ss_pred             HHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhccCH
Confidence            4556666665432    1122233445555666555555444     455666676666788888999888887544221


Q ss_pred             HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh
Q 039015          456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE  495 (685)
Q Consensus       456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~  495 (685)
                      ...  ..++..|-.+|+.. ....|-.|..+|-.|+....
T Consensus       299 ~~~--~~~vs~L~~fL~s~-rv~~rFsA~Riln~lam~~P  335 (898)
T COG5240         299 QFV--DQTVSSLRTFLKST-RVVLRFSAMRILNQLAMKYP  335 (898)
T ss_pred             HHH--HHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhhCC
Confidence            111  22455666667777 88889999999999986544

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=84.04  E-value=8.2  Score=42.11  Aligned_cols=185  Identities=14%  Similarity=0.125  Sum_probs=114.7

Q ss_pred             HHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH--------HhcCcHHHHHH
Q 039015          398 KVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV--------VESGGLDFIVD  469 (685)
Q Consensus       398 ~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i--------~~~g~i~~Lv~  469 (685)
                      .|++.|..+....+..-..+.+.||+..++..|..+-..+.+..-..=.+-...++.+...        ...+.++.|++
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk   82 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLK   82 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHH
Confidence            4677777777656566778889999999999886432221111000000000000111111        12333444444


Q ss_pred             HhcCCCCHHHHHHHHHHHHHhcC-ch----hHHHHhhcCCCcHHHHHHHhccCC---HHHHHHHHHHHHHhcCCCC-cHH
Q 039015          470 MVKKGLKVEARQHAAATLFYIAS-IE----EYRKLIGENPEAIPALVDMVRDGT---DRSKKNALVAIFGLLMHSG-NHW  540 (685)
Q Consensus       470 lL~~~~~~e~~~~Aa~~L~~Ls~-~~----~~~~~i~~~~g~i~~Lv~lL~~~~---~~~~~~A~~aL~nLs~~~~-n~~  540 (685)
                      ++.+                +.. ..    ..|..+-. ......|..++++..   +.+-..|+..+..+-.++. .-.
T Consensus        83 ~l~~----------------~~~~~~~~~~~lrnl~D~-s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~  145 (379)
T PF06025_consen   83 FLSH----------------AMQHSGGFGDRLRNLIDS-SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFS  145 (379)
T ss_pred             HHHH----------------HhccCCCcccccccccch-hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhH
Confidence            3322                222 11    22222221 345666667777654   5667788888888887665 556


Q ss_pred             HHHhcCChHHHHHHhc-c--CCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhc
Q 039015          541 RFLAAGAVPLLLNLLT-S--SDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDS  599 (685)
Q Consensus       541 ~iv~~G~v~~Lv~lL~-~--~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~  599 (685)
                      .+.++|.++.+++.+. .  .++.++....-.+|..||-+..|.+.+.+.+.++.+++++.+
T Consensus       146 ~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s  207 (379)
T PF06025_consen  146 ILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTS  207 (379)
T ss_pred             HHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCC
Confidence            6778999999999985 2  245777777888899999999999999999999999997764

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.54  E-value=49  Score=38.82  Aligned_cols=196  Identities=16%  Similarity=0.150  Sum_probs=123.8

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHhhcc-ccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhc
Q 039015          424 PSLLKLLSSKDSSTQENAIAALLNL-SKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGE  502 (685)
Q Consensus       424 p~Lv~lL~s~~~~~~~~A~~aL~nL-s~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~  502 (685)
                      .-|..+|++........|+.-+..+ +.+.+.      ....+.+|...... +.|++...---|..-+..+.+-..+  
T Consensus        38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVask-n~EVKkLVyvYLlrYAEeqpdLALL--  108 (968)
T KOG1060|consen   38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASK-NIEVKKLVYVYLLRYAEEQPDLALL--  108 (968)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhcc-CHHHHHHHHHHHHHHhhcCCCceee--
Confidence            3567788887666666666655444 444331      23456777777777 8888876655444444433322222  


Q ss_pred             CCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-ChhcH
Q 039015          503 NPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE-KLDGT  581 (685)
Q Consensus       503 ~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~-~~~~~  581 (685)
                         -|..+=+-|+++++..+.-|+.+|..+      |..++.-=++-++-+.. .+..+.++..|+-++-.|-. +++.+
T Consensus       109 ---SIntfQk~L~DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~-~D~s~yVRk~AA~AIpKLYsLd~e~k  178 (968)
T KOG1060|consen  109 ---SINTFQKALKDPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAV-TDPSPYVRKTAAHAIPKLYSLDPEQK  178 (968)
T ss_pred             ---eHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHh-cCCcHHHHHHHHHhhHHHhcCChhhH
Confidence               377888889999999999888888766      32222111111112222 57778888888888877744 56655


Q ss_pred             HHHHhcCChHHHHH-HhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHH
Q 039015          582 IAILHHGALDMIMK-ILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKK  652 (685)
Q Consensus       582 ~~i~~~g~v~~Lv~-lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~  652 (685)
                      .++.+      +++ +|.+. ++.+...|+.+.-.+|-+.    .+.+   .+-...|..++.+-++=++--
T Consensus       179 ~qL~e------~I~~LLaD~-splVvgsAv~AF~evCPer----ldLI---HknyrklC~ll~dvdeWgQvv  236 (968)
T KOG1060|consen  179 DQLEE------VIKKLLADR-SPLVVGSAVMAFEEVCPER----LDLI---HKNYRKLCRLLPDVDEWGQVV  236 (968)
T ss_pred             HHHHH------HHHHHhcCC-CCcchhHHHHHHHHhchhH----HHHh---hHHHHHHHhhccchhhhhHHH
Confidence            55543      444 78887 9999999999999998652    2333   233778888887766555543

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=83.30  E-value=4.1  Score=33.12  Aligned_cols=68  Identities=19%  Similarity=0.119  Sum_probs=59.5

Q ss_pred             HHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCc
Q 039015          438 QENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEA  506 (685)
Q Consensus       438 ~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~  506 (685)
                      ...|++++.++...+.+-..+.+.+.++.++++..+.....+|..|..+|.-++...+..+.+.+ .|.
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~-~gW   71 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDE-LGW   71 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHH-cCC
Confidence            46789999999998888888888899999999999776889999999999999999988888766 553

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=83.17  E-value=21  Score=37.52  Aligned_cols=167  Identities=16%  Similarity=0.130  Sum_probs=109.6

Q ss_pred             HHHHHH-HHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhcccc-Ccch-h-
Q 039015          380 LANFIS-DRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSK-HCKS-K-  455 (685)
Q Consensus       380 ~i~~Lv-~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~-~~~~-k-  455 (685)
                      .+..|+ ..+.+.++.+|..|+++|...+--+.   . ++. ..++.+...+..++..++..|+.++..+.. +... - 
T Consensus        27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~-~a~-~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~  101 (298)
T PF12719_consen   27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---E-LAK-EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD  101 (298)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---H-HHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence            344444 67788999999999999999987443   2 221 237778888877899999999999987752 2211 1 


Q ss_pred             ------HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccC----CHHHHHHH
Q 039015          456 ------SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDG----TDRSKKNA  525 (685)
Q Consensus       456 ------~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~----~~~~~~~A  525 (685)
                            ........+..+...|.+. +++++..|+.-+..|-..+....   . +.++..|+-+.-++    +.+.+..-
T Consensus       102 ~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~---~-~~vL~~Lll~yF~p~t~~~~~LrQ~L  176 (298)
T PF12719_consen  102 SESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD---P-PKVLSRLLLLYFNPSTEDNQRLRQCL  176 (298)
T ss_pred             chhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc---H-HHHHHHHHHHHcCcccCCcHHHHHHH
Confidence                  1123456788888888888 88999999999988765543222   1 33455555544332    24444433


Q ss_pred             HHHHHHhcCCCCcHHHHHhcCChHHHHHHhc
Q 039015          526 LVAIFGLLMHSGNHWRFLAAGAVPLLLNLLT  556 (685)
Q Consensus       526 ~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~  556 (685)
                      ...+-..+......+..+..+.++.+-.+..
T Consensus       177 ~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~  207 (298)
T PF12719_consen  177 SVFFPVYASSSPENQERLAEAFLPTLRTLSN  207 (298)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence            3344455655555566677777888777774

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=83.09  E-value=0.44  Score=54.43  Aligned_cols=64  Identities=22%  Similarity=0.445  Sum_probs=47.7

Q ss_pred             CCCccCcCccccCCCceeccCcccccHHHHHHHHHc--CCCCCCCCCccccCCCCcccHHHHhhHH
Q 039015          278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRA--GNSTCPKTGERLQSKELLVNLVLKRIIQ  341 (685)
Q Consensus       278 ~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~--~~~~CP~c~~~l~~~~l~~n~~l~~~i~  341 (685)
                      .....||||.....+|+.+.|-|.||+.|+-.-|..  +...||+|+..+......--..-..+++
T Consensus        19 ~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vq   84 (684)
T KOG4362|consen   19 QKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSK   84 (684)
T ss_pred             hhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHH
Confidence            346899999999999999999999999999876654  3568999987665544433333334444

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=82.84  E-value=4.2  Score=40.80  Aligned_cols=88  Identities=18%  Similarity=0.232  Sum_probs=65.9

Q ss_pred             hHHHHHHHHHHHHhcChhcHHHHHhcCC---hH----HHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCc
Q 039015          562 ELITDSLAVLATLAEKLDGTIAILHHGA---LD----MIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSL  634 (685)
Q Consensus       562 ~~~~~al~~L~~La~~~~~~~~i~~~g~---v~----~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~  634 (685)
                      .-+.-|+.+|+.|+-.+.+.+.|+..+-   +.    .|++++....++..+|.|+.+|.+||..+..-++. +....+.
T Consensus       139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~-iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARA-IAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHH-HHHhhch
Confidence            3467799999999999999999988875   33    33444443337889999999999999987554444 4444788


Q ss_pred             HHHHHHHHhcCChHHH
Q 039015          635 MGSLYSLLSQGSSRAS  650 (685)
Q Consensus       635 i~~L~~Ll~~g~~~~k  650 (685)
                      +..|+.++.++...+.
T Consensus       218 i~~Li~FiE~a~~~~~  233 (257)
T PF12031_consen  218 ISHLIAFIEDAEQNAH  233 (257)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999987654443

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]

Probab=82.71  E-value=0.82  Score=44.93  Aligned_cols=59  Identities=19%  Similarity=0.343  Sum_probs=46.3

Q ss_pred             CccCcCccccCCCceec-cCcccccHHHHHHHHHc-CCCCCCC--CCccccCCCCcccHHHHh
Q 039015          280 DFTCPISLEIMKDPVTL-STGHTYDRASILKWFRA-GNSTCPK--TGERLQSKELLVNLVLKR  338 (685)
Q Consensus       280 ~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~-~~~~CP~--c~~~l~~~~l~~n~~l~~  338 (685)
                      +.+|||......-|++. .|.|.|++..|.+++.. ....||.  |.+....+.++-++.|..
T Consensus       189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE~  251 (275)
T COG5627         189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILEK  251 (275)
T ss_pred             cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHHH
Confidence            47999999999999875 79999999999999873 2557886  777776666666655543

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=81.69  E-value=17  Score=37.45  Aligned_cols=163  Identities=17%  Similarity=0.167  Sum_probs=103.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhC--CHHHHHHhhcC----CCHHHHHHHHHHhhccccCcch
Q 039015          381 ANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVG--CIPSLLKLLSS----KDSSTQENAIAALLNLSKHCKS  454 (685)
Q Consensus       381 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G--~ip~Lv~lL~s----~~~~~~~~A~~aL~nLs~~~~~  454 (685)
                      +..+.+.+.+=+.+.+.-++..+|.++. ++..-..+...+  ....+..++..    .....+-.+++++.|+..+..+
T Consensus        65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~  143 (268)
T PF08324_consen   65 LILLLKILLSWPPESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG  143 (268)
T ss_dssp             HHHHHHHHCCS-CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHhCCCccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc
Confidence            4455555554455667888888988886 545555555443  34555555433    4677888999999999999999


Q ss_pred             hHHHHhc-C-cHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCchhHHHHhhcC--CCcHHHHHHHhcc--CCHHHHHHH
Q 039015          455 KSMVVES-G-GLDFIVDMVKKGL---KVEARQHAAATLFYIASIEEYRKLIGEN--PEAIPALVDMVRD--GTDRSKKNA  525 (685)
Q Consensus       455 k~~i~~~-g-~i~~Lv~lL~~~~---~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~--~g~i~~Lv~lL~~--~~~~~~~~A  525 (685)
                      +..+.+. + .+-..+..+....   +..++..++.+++|+|..--.... ..+  ...+..+++.+..  .++++.-.+
T Consensus       144 ~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~-~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~  222 (268)
T PF08324_consen  144 RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRS-DEEWQSELLSSIIEVLSREESDEEALYRL  222 (268)
T ss_dssp             HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS--CCHHHHHHHHHHHHCHCCHTSHHHHHHH
T ss_pred             HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhccccCCHHHHHHH
Confidence            9988854 3 3444433333332   467888888889999764321110 110  1245566663332  578899999


Q ss_pred             HHHHHHhcCCCCcHHHHHhc
Q 039015          526 LVAIFGLLMHSGNHWRFLAA  545 (685)
Q Consensus       526 ~~aL~nLs~~~~n~~~iv~~  545 (685)
                      +.||.+|...+.......+.
T Consensus       223 LvAlGtL~~~~~~~~~~~~~  242 (268)
T PF08324_consen  223 LVALGTLLSSSDSAKQLAKS  242 (268)
T ss_dssp             HHHHHHHHCCSHHHHHHCCC
T ss_pred             HHHHHHHhccChhHHHHHHH
Confidence            99999999766666655553

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=81.24  E-value=88  Score=34.07  Aligned_cols=157  Identities=19%  Similarity=0.198  Sum_probs=95.4

Q ss_pred             HHHHHHHHhcCCC-HHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhh--cC--------CCHHHHHHHHHHhhcc
Q 039015          380 LANFISDRLLEGT-SEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLL--SS--------KDSSTQENAIAALLNL  448 (685)
Q Consensus       380 ~i~~Lv~~L~s~~-~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL--~s--------~~~~~~~~A~~aL~nL  448 (685)
                      .-..+...|..+- ..-+...+..++.|++ +...-..+...-.+..|+.+-  ++        .|..+...|+.+|+|+
T Consensus        46 L~e~i~~Vle~~~p~t~~v~~LetvrILSR-dk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNl  124 (532)
T KOG4464|consen   46 LGERIFEVLENGEPLTHRVVCLETVRILSR-DKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNL  124 (532)
T ss_pred             HHHHHHHHHhcCCCchhhhhHHHHHHHHhc-cccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHH
Confidence            3455566666664 4456677888888886 322222222111122232221  11        3557888999999999


Q ss_pred             ccCcch-hHHHHhcCcHHHHHHHhcCC----CCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccC-----
Q 039015          449 SKHCKS-KSMVVESGGLDFIVDMVKKG----LKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDG-----  517 (685)
Q Consensus       449 s~~~~~-k~~i~~~g~i~~Lv~lL~~~----~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~-----  517 (685)
                      ..+... +....+......+.+.+...    ........=...||-|.... +.|..+....++++.+.++|.+.     
T Consensus       125 vf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgids  204 (532)
T KOG4464|consen  125 VFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDS  204 (532)
T ss_pred             HhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCC
Confidence            988754 77777877777777765421    12344555566777775433 66666655588999999998631     


Q ss_pred             ----CH---HH---HHHHHHHHHHhcCCCC
Q 039015          518 ----TD---RS---KKNALVAIFGLLMHSG  537 (685)
Q Consensus       518 ----~~---~~---~~~A~~aL~nLs~~~~  537 (685)
                          ++   +-   -..++.++||+..+..
T Consensus       205 e~n~~~l~pqe~n~a~EaLK~~FNvt~~~~  234 (532)
T KOG4464|consen  205 EINVPPLNPQETNRACEALKVFFNVTCDSD  234 (532)
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHhheeeccc
Confidence                11   22   2357788999986543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=81.14  E-value=44  Score=41.08  Aligned_cols=228  Identities=13%  Similarity=0.149  Sum_probs=128.9

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcC---CchhhHHHhhCCHHHHHHhhcCCCHH-HHHHHHHHhhcccc----
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSS---IFNRSCLVEVGCIPSLLKLLSSKDSS-TQENAIAALLNLSK----  450 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~---~~~r~~i~~~G~ip~Lv~lL~s~~~~-~~~~A~~aL~nLs~----  450 (685)
                      ..++.++..+..+..++|..|+.+|..+...-   +..-..+.-.=..|.|-.++.+.+.. ++..=+..|..|+.    
T Consensus       462 RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r  541 (1431)
T KOG1240|consen  462 RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR  541 (1431)
T ss_pred             hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH
Confidence            45788888888888899999998887654211   22222333334567777777663322 11111111111111    


Q ss_pred             --------------Ccchh-HHHH-----h----cCcHHH-HHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhc---
Q 039015          451 --------------HCKSK-SMVV-----E----SGGLDF-IVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGE---  502 (685)
Q Consensus       451 --------------~~~~k-~~i~-----~----~g~i~~-Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~---  502 (685)
                                    ++.|- ....     +    ...|+. ++.+|... .+-++..-...|.-|      +..+|+   
T Consensus       542 Fle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~-~~~Vkr~Lle~i~~L------C~FFGk~ks  614 (1431)
T KOG1240|consen  542 FLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDS-PPIVKRALLESIIPL------CVFFGKEKS  614 (1431)
T ss_pred             HHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHH------HHHhhhccc
Confidence                          11111 0000     0    111222 22333333 445555444444444      333333   


Q ss_pred             CCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHH
Q 039015          503 NPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTI  582 (685)
Q Consensus       503 ~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~  582 (685)
                      +.=.++.|+..|.+.+...+..=-..|..+|.+-+-+  -++.+.+|.|.+-| +|..+.+...|+.+|..|+...--+.
T Consensus       615 ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~l-tD~EE~Viv~aL~~ls~Lik~~ll~K  691 (1431)
T KOG1240|consen  615 NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGL-TDGEEAVIVSALGSLSILIKLGLLRK  691 (1431)
T ss_pred             ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhc-cCcchhhHHHHHHHHHHHHHhcccch
Confidence            2336778888887777666654445555555443322  36778899999999 78889999999999999988543332


Q ss_pred             H-HHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhcc
Q 039015          583 A-ILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCIN  619 (685)
Q Consensus       583 ~-i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~  619 (685)
                      . +.+  .++...-+|-+. +..++..++.++......
T Consensus       692 ~~v~~--i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~~  726 (1431)
T KOG1240|consen  692 PAVKD--ILQDVLPLLCHP-NLWIRRAVLGIIAAIARQ  726 (1431)
T ss_pred             HHHHH--HHHhhhhheeCc-hHHHHHHHHHHHHHHHhh
Confidence            2 221  123333355555 999999999999888764

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=81.01  E-value=31  Score=40.85  Aligned_cols=93  Identities=26%  Similarity=0.314  Sum_probs=68.4

Q ss_pred             HHHHhcC-CCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChH--HHHHHhhcCCChh
Q 039015          528 AIFGLLM-HSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALD--MIMKILDSCTSRA  604 (685)
Q Consensus       528 aL~nLs~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~--~Lv~lL~~~~s~~  604 (685)
                      +|+++.. .++++..+++.|++..+...+..-...++...++++|.+++...+.+........+.  ..-.++....+.+
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            8888885 456999999999999999999766778999999999999999765555432222222  2333454442336


Q ss_pred             HHHHHHHHHHHHhccC
Q 039015          605 GKEYCVSLLLALCING  620 (685)
Q Consensus       605 ~~e~a~~~L~~L~~~~  620 (685)
                      .-.+|+++|..+..++
T Consensus       574 rsY~~~siLa~ll~~~  589 (699)
T KOG3665|consen  574 RSYNAASILALLLSDS  589 (699)
T ss_pred             HHHHHHHHHHHHHhCC
Confidence            6778999999888764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	685
1t1h_A	78	Nmr Solution Structure Of The U Box Domain From Atp		1e-17
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		3e-04
2c2v_S	78	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		4e-04
2egp_A	79	Solution Structure Of The Ring-Finger Domain From H		5e-04

>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/72 (55%), Positives = 49/72 (68%)
Query: 278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLK 337
           P+ F CPISLE+MKDPV +STG TY+R+SI KW  AG+ TCPK+ E L    L  N VLK
Sbjct: 6   PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLK 65
Query: 338 RIIQDWSVDNGV 349
            +I  W   NG+
Sbjct: 66  SLIALWCESNGI 77

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLK 337
           PD     IS E+M++P    +G TYDR  I +  +      P T   L  ++L+ NL +K
Sbjct: 206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMK 265
Query: 338 RIIQDWSVDNG 348
            +I  +  +NG
Sbjct: 266 EVIDAFISENG 276

>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 78

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLK 337
           PD     IS E+M++P    +G TYDR  I +  +      P T   L  ++L+ NL +K
Sbjct: 3   PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMK 62
Query: 338 RIIQDWSVDNG 348
            +I  +  +NG
Sbjct: 63  EVIDAFISENG 73

>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human Tripartite Motif Protein 34 Length = 79

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 275 GLTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFR------AGNSTCPKTG-----E 323
           G   ++ TCPI LE++ +P++L  GH+  RA I    +       G S+CP  G     E
Sbjct: 7   GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66
Query: 324 RLQSKELLVNLV 335
            LQ+ + L N+V
Sbjct: 67  HLQANQHLANIV 78

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	685
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-37
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	7e-25
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	2e-36
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-33
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	8e-30
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	6e-29
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	8e-25
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-19
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-33
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-29
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	8e-29
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-24
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-20
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-33
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-30
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-24
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-20
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-15
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-32
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	9e-24
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-06
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	7e-06
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	6e-32
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-31
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	4e-18
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	8e-17
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	6e-07
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	3e-27
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	6e-27
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	6e-25
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-24
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	4e-19
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-18
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-17
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-16
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-15
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	5e-24
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	5e-20
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	5e-13
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	6e-12
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-23
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	4e-22
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	4e-19
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	8e-16
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	3e-09
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-22
3nmz_A	458	APC variant protein; protein-protein complex, arma	7e-18
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-11
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-10
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	6e-20
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	1e-19
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-18
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-13
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-11
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	4e-11
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-18
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	6e-13
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	5e-18
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-17
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	4e-17
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-11
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	9e-11
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	4e-17
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	3e-16
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	5e-16
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	7e-05
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	4e-14
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-08
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-06
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	6e-05
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	2e-13
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	6e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	4e-11
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	5e-11
1z6u_A	150	NP95-like ring finger protein isoform B; structura	5e-11
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	1e-10
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	5e-10
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	8e-10
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	9e-10
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	1e-09
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	2e-09
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	2e-09
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	3e-09
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	4e-09
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	6e-09
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	8e-09
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	1e-08
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	1e-08
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	1e-07
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	2e-07
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	3e-07
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	4e-07
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	5e-07
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	7e-07
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	7e-07
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	8e-07
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	4e-06
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	4e-06
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	1e-05
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	1e-04
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	3e-04

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  138 bits (351), Expect = 3e-37
 Identities = 49/235 (20%), Positives = 106/235 (45%), Gaps = 6/235 (2%)

Query: 388 LLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLN 447
           L     +E+     +   +          +++ G +P+L++LLSS +    + A+ AL N
Sbjct: 21  LNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 80

Query: 448 LSKHC-KSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEA 506
           ++    +    V+++G L  +V ++      +  Q A   L  IAS    +     +  A
Sbjct: 81  IASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGA 139

Query: 507 IPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLA-AGAVPLLLNLLTSSDSEELIT 565
           +PALV ++    ++  + AL A+  +        + +  AGA+P L+ LL+S + E+++ 
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQ 198

Query: 566 DSLAVLATLAEK-LDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCIN 619
           ++L  L+ +A    +   A+   GAL+ + ++     +   ++     L  L  +
Sbjct: 199 EALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH-ENEKIQKEAQEALEKLQSH 252

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  103 bits (258), Expect = 7e-25
 Identities = 53/251 (21%), Positives = 106/251 (42%), Gaps = 8/251 (3%)

Query: 413 NRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS-KSMVVESGGLDFIVDMV 471
           +         +P + + L+S D   Q +A      +          V+++G L  +V ++
Sbjct: 4   SHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL 63

Query: 472 KKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFG 531
                 +  Q A   L  IAS    +     +  A+PALV ++    ++  + AL A+  
Sbjct: 64  SSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 122

Query: 532 LLMHSGNHWRF-LAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE-KLDGTIAILHHGA 589
           +        +  + AGA+P L+ LL+S + E+++ ++L  L+ +A    +   A++  GA
Sbjct: 123 IASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVIDAGA 181

Query: 590 LDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRA 649
           L  ++++L S   +   +  +  L  +   G     A  VK    +  L  L S  + + 
Sbjct: 182 LPALVQLLSSPNEQI-LQEALWALSNIASGGNEQKQA--VKEAGALEKLEQLQSHENEKI 238

Query: 650 SKKASALIRIL 660
            K+A   +  L
Sbjct: 239 QKEAQEALEKL 249

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78

 Score =  130 bits (329), Expect = 2e-36
 Identities = 40/72 (55%), Positives = 49/72 (68%)

Query: 278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLK 337
           P+ F CPISLE+MKDPV +STG TY+R+SI KW  AG+ TCPK+ E L    L  N VLK
Sbjct: 6   PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLK 65

Query: 338 RIIQDWSVDNGV 349
            +I  W   NG+
Sbjct: 66  SLIALWCESNGI 77

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  134 bits (340), Expect = 1e-33
 Identities = 62/280 (22%), Positives = 107/280 (38%), Gaps = 14/280 (5%)

Query: 387 RLLEGTS--EEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAA 444
           R ++ T+  E     A  +  L+         + + G IP+L+K+L S   S    AI  
Sbjct: 66  RTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITT 124

Query: 445 LLNLSKHC-KSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASI-EEYRKLIGE 502
           L NL  H   +K  V  +GGL  +V ++ K   V+        L  +A   +E + +I  
Sbjct: 125 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILA 183

Query: 503 NPEAIPALVDMVRDGTDRSKK-NALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSE 561
           +     ALV+++R  T           +  L + S N    + AG +  L   LT    +
Sbjct: 184 S-GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS-Q 241

Query: 562 ELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGG 621
            L+ + L  L  L++    T      G L  ++++L S            +L  L  N  
Sbjct: 242 RLVQNCLWTLRNLSD--AATKQEGMEGLLGTLVQLLGSDDINV-VTCAAGILSNLTCNNY 298

Query: 622 ANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILH 661
            N +   V     + +L   + +   R      A+  + H
Sbjct: 299 KNKMM--VCQVGGIEALVRTVLRAGDREDITEPAICALRH 336

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  123 bits (310), Expect = 8e-30
 Identities = 54/292 (18%), Positives = 107/292 (36%), Gaps = 13/292 (4%)

Query: 371 LAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLL 430
             A  A+  L   ++D          NK A  V  L+K      + +     + ++++ +
Sbjct: 13  ELATRAIPELTKLLND----EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 68

Query: 431 -SSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFY 489
            ++ D  T       L NLS H +    + +SGG+  +V M+   +      +A  TL  
Sbjct: 69  QNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD-SVLFYAITTLHN 127

Query: 490 IASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG-NHWRFLAAGAV 548
           +   +E  K+       +  +V ++     +        +  L   +  +    LA+G  
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 187

Query: 549 PLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEY 608
             L+N++ +   E+L+  +  VL  L+       AI+  G +  +   L   + R   + 
Sbjct: 188 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRL-VQN 246

Query: 609 CVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRIL 660
           C+  L  L                 L+G+L  LL          A+ ++  L
Sbjct: 247 CLWTLRNLSDAATKQEGME-----GLLGTLVQLLGSDDINVVTCAAGILSNL 293

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  120 bits (303), Expect = 6e-29
 Identities = 59/318 (18%), Positives = 117/318 (36%), Gaps = 40/318 (12%)

Query: 371 LAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLL 430
           +   G M+ L   ++D     +        + +R L+ +           G + +L++LL
Sbjct: 223 IVEAGGMQALGLHLTD----PSQRLVQNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLL 275

Query: 431 SSKDSSTQENAIAALLNLSKHCKS-KSMVVESGGLDFIVDMVK-KGLKVEARQHAAATLF 488
            S D +    A   L NL+ +    K MV + GG++ +V  V   G + +  + A   L 
Sbjct: 276 GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 335

Query: 489 YIASI----EEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLL-MHSGNHWRFL 543
           ++ S     E  +  +  +   +P +V ++   +      A V +   L +   NH    
Sbjct: 336 HLTSRHQEAEMAQNAVRLH-YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLR 394

Query: 544 AAGAVPLLLNLLTSSD---------------------SEELITDSLAVLATLAEKLDGTI 582
             GA+P L+ LL  +                       EE++      L  LA  +   I
Sbjct: 395 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 454

Query: 583 AILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLL 642
            I     + + +++L S      +     +L  L  +  A   A  +++      L  LL
Sbjct: 455 VIRGLNTIPLFVQLLYSPIENI-QRVAAGVLCELAQDKEA---AEAIEAEGATAPLTELL 510

Query: 643 SQGSSRASKKASALIRIL 660
              +   +  A+A++  +
Sbjct: 511 HSRNEGVATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  107 bits (270), Expect = 8e-25
 Identities = 48/261 (18%), Positives = 89/261 (34%), Gaps = 17/261 (6%)

Query: 371 LAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIF--NRSCLVEVGCIPSLLK 428
           + A G  + L N +       T E+        R+L   S+   N+  +VE G + +L  
Sbjct: 181 ILASGGPQALVNIMRT----YTYEKLLWTT--SRVLKVLSVCSSNKPAIVEAGGMQALGL 234

Query: 429 LLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLF 488
            L+       +N +  L NLS     +      G L  +V ++     +     AA  L 
Sbjct: 235 HLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSD-DINVVTCAAGILS 291

Query: 489 YIASIEEYRKLIGENPEAIPALVDMVRDGTDRS--KKNALVAIFGLLMHSGNH----WRF 542
            +       K++      I ALV  V    DR    + A+ A+  L              
Sbjct: 292 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAV 351

Query: 543 LAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTS 602
                +P+++ LL       LI  ++ ++  LA        +   GA+  ++++L     
Sbjct: 352 RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQ 411

Query: 603 RAGKEYCVSLLLALCINGGAN 623
              +   +       + G   
Sbjct: 412 DTQRRTSMGGTQQQFVEGVRM 432

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 90.6 bits (225), Expect = 3e-19
 Identities = 33/185 (17%), Positives = 63/185 (34%), Gaps = 24/185 (12%)

Query: 413 NRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALL-NLSKHCKSKSMVVESGGLDFIVDMV 471
            ++ +     +P ++KLL          A   L+ NL+    + + + E G +  +V ++
Sbjct: 347 AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 406

Query: 472 KKG---------------------LKVEARQHAAATLFYIASIEEYRKLIGENPEAIPAL 510
            +                         E  +     L  +A     R +I      IP  
Sbjct: 407 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGL-NTIPLF 465

Query: 511 VDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAV 570
           V ++    +  ++ A   +  L           A GA   L  LL S + E + T + AV
Sbjct: 466 VQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN-EGVATYAAAV 524

Query: 571 LATLA 575
           L  ++
Sbjct: 525 LFRMS 529

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  135 bits (342), Expect = 2e-33
 Identities = 59/293 (20%), Positives = 106/293 (36%), Gaps = 13/293 (4%)

Query: 371 LAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLL 430
           + +   +  +   + +       E     +  +  L+         + + G IP+L+ +L
Sbjct: 188 MRSPQMVSAIVRTMQN---TNDVETARCTSGTLHNLSHHRE-GLLAIFKSGGIPALVNML 243

Query: 431 SSKDSSTQENAIAALLNLSKHC-KSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFY 489
            S   S   +AI  L NL  H   +K  V  +GGL  +V ++ K   V+        L  
Sbjct: 244 GSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQI 302

Query: 490 IASIEEYRKLIGENPEAIPALVDMVRDGTDRSKK-NALVAIFGLLMHSGNHWRFLAAGAV 548
           +A   +  KLI        ALV+++R  T           +  L + S N    + AG +
Sbjct: 303 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGM 362

Query: 549 PLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEY 608
             L   LT    + L+ + L  L  L++    T      G L  ++++L S         
Sbjct: 363 QALGLHLTDPS-QRLVQNCLWTLRNLSD--AATKQEGMEGLLGTLVQLLGSDDINV-VTC 418

Query: 609 CVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILH 661
              +L  L  N   N +   V     + +L   + +   R      A+  + H
Sbjct: 419 AAGILSNLTCNNYKNKMM--VCQVGGIEALVRTVLRAGDREDITEPAICALRH 469

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  123 bits (310), Expect = 2e-29
 Identities = 55/291 (18%), Positives = 107/291 (36%), Gaps = 13/291 (4%)

Query: 372 AAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLL- 430
            A  A+  L   ++D          NK A  V  L+K      + +     + ++++ + 
Sbjct: 147 LATRAIPELTKLLND----EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ 202

Query: 431 SSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYI 490
           ++ D  T       L NLS H +    + +SGG+  +V+M+   +      HA  TL  +
Sbjct: 203 NTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVD-SVLFHAITTLHNL 261

Query: 491 ASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWR-FLAAGAVP 549
              +E  K+       +  +V ++     +        +  L   +       LA+G   
Sbjct: 262 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 321

Query: 550 LLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYC 609
            L+N++ +   E+L+  +  VL  L+       AI+  G +  +   L   + R   + C
Sbjct: 322 ALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRL-VQNC 380

Query: 610 VSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRIL 660
           +  L  L                 L+G+L  LL          A+ ++  L
Sbjct: 381 LWTLRNLSDAATKQEGME-----GLLGTLVQLLGSDDINVVTCAAGILSNL 426

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  121 bits (305), Expect = 8e-29
 Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 8/259 (3%)

Query: 405 LLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSK-SMVVESGG 463
            +     +     +    IP L KLL+ +D      A   +  LSK   S+ +++     
Sbjct: 134 AVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193

Query: 464 LDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKK 523
           +  IV  ++    VE  +  + TL  ++   E    I ++   IPALV+M+    D    
Sbjct: 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSG-GIPALVNMLGSPVDSVLF 252

Query: 524 NALVAIFGLLMHSGNHWRFLA-AGAVPLLLNLLTSSDSEELITDSLAVLATLAE-KLDGT 581
           +A+  +  LL+H       +  AG +  ++ LL +  + + +  +   L  LA    +  
Sbjct: 253 HAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAYGNQESK 311

Query: 582 IAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSL 641
           + IL  G    ++ I+ + T          +L  L +   ++    +V++  +  +L   
Sbjct: 312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC--SSNKPAIVEAGGM-QALGLH 368

Query: 642 LSQGSSRASKKASALIRIL 660
           L+  S R  +     +R L
Sbjct: 369 LTDPSQRLVQNCLWTLRNL 387

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  107 bits (268), Expect = 3e-24
 Identities = 48/261 (18%), Positives = 90/261 (34%), Gaps = 17/261 (6%)

Query: 371 LAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIF--NRSCLVEVGCIPSLLK 428
           + A G  + L N     +   T E+        R+L   S+   N+  +VE G + +L  
Sbjct: 314 ILASGGPQALVNI----MRTYTYEKLLWTT--SRVLKVLSVCSSNKPAIVEAGGMQALGL 367

Query: 429 LLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLF 488
            L+       +N +  L NLS     +      G L  +V ++     +     AA  L 
Sbjct: 368 HLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSD-DINVVTCAAGILS 424

Query: 489 YIASIEEYRKLIGENPEAIPALVDMVRDGTDRS--KKNALVAIFGLLMHSGNHWR----F 542
            +       K++      I ALV  V    DR    + A+ A+  L     +        
Sbjct: 425 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAV 484

Query: 543 LAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTS 602
                +P+++ LL       LI  ++ ++  LA        +   GA+  ++++L     
Sbjct: 485 RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQ 544

Query: 603 RAGKEYCVSLLLALCINGGAN 623
              +   +       + G   
Sbjct: 545 DTQRRTSMGGTQQQFVEGVRM 565

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 93.6 bits (232), Expect = 7e-20
 Identities = 35/209 (16%), Positives = 71/209 (33%), Gaps = 26/209 (12%)

Query: 413 NRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALL-NLSKHCKSKSMVVESGGLDFIVDMV 471
            ++ +     +P ++KLL          A   L+ NL+    + + + E G +  +V ++
Sbjct: 480 AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 539

Query: 472 KKG---------------------LKVEARQHAAATLFYIASIEEYRKLIGENPEAIPAL 510
            +                         E  +     L  +A     R +I      IP  
Sbjct: 540 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGL-NTIPLF 598

Query: 511 VDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAV 570
           V ++    +  ++ A   +  L           A GA   L  LL S + E + T + AV
Sbjct: 599 VQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN-EGVATYAAAV 657

Query: 571 LATLAEKLDGTIAILHHGALDMIMKILDS 599
           L  ++E  D         ++++   +  +
Sbjct: 658 LFRMSE--DKPQDYKKRLSVELTSSLFRT 684

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  134 bits (339), Expect = 4e-33
 Identities = 58/289 (20%), Positives = 106/289 (36%), Gaps = 15/289 (5%)

Query: 371 LAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLL 430
           + +   +  +   + +       E     A  +  L+         + + G IP+L+K+L
Sbjct: 52  MRSPQMVSAIVRTMQN---TNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKML 107

Query: 431 SSKDSSTQENAIAALLNLSKHC-KSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFY 489
            S   S    AI  L NL  H   +K  V  +GGL  +V ++ K   V+        L  
Sbjct: 108 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQI 166

Query: 490 IASI-EEYRKLIGENPEAIPALVDMVRDGTDRSKK-NALVAIFGLLMHSGNHWRFLAAGA 547
           +A   +E + +I  +     ALV+++R  T           +  L + S N    + AG 
Sbjct: 167 LAYGNQESKLIILAS-GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG 225

Query: 548 VPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKE 607
           +  L   LT    + L+ + L  L  L++    T      G L  ++++L S        
Sbjct: 226 MQALGLHLTDPS-QRLVQNCLWTLRNLSD--AATKQEGMEGLLGTLVQLLGSDDINV-VT 281

Query: 608 YCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASAL 656
               +L  L  N   N + +       + +L   + +   R      A+
Sbjct: 282 CAAGILSNLTCNNYKNKMMVC--QVGGIEALVRTVLRAGDREDITEPAI 328

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  126 bits (318), Expect = 1e-30
 Identities = 54/292 (18%), Positives = 107/292 (36%), Gaps = 13/292 (4%)

Query: 371 LAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLL 430
             A  A+  L   ++D          NK A  V  L+K      + +     + ++++ +
Sbjct: 10  ELATRAIPELTKLLND----EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 65

Query: 431 -SSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFY 489
            ++ D  T       L NLS H +    + +SGG+  +V M+   +      +A  TL  
Sbjct: 66  QNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD-SVLFYAITTLHN 124

Query: 490 IASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG-NHWRFLAAGAV 548
           +   +E  K+       +  +V ++     +        +  L   +  +    LA+G  
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184

Query: 549 PLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEY 608
             L+N++ +   E+L+  +  VL  L+       AI+  G +  +   L   + R   + 
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRL-VQN 243

Query: 609 CVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRIL 660
           C+  L  L                 L+G+L  LL          A+ ++  L
Sbjct: 244 CLWTLRNLSDAATKQEGME-----GLLGTLVQLLGSDDINVVTCAAGILSNL 290

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  106 bits (266), Expect = 4e-24
 Identities = 48/261 (18%), Positives = 89/261 (34%), Gaps = 17/261 (6%)

Query: 371 LAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIF--NRSCLVEVGCIPSLLK 428
           + A G  + L N     +   T E+        R+L   S+   N+  +VE G + +L  
Sbjct: 178 ILASGGPQALVNI----MRTYTYEKLLWTT--SRVLKVLSVCSSNKPAIVEAGGMQALGL 231

Query: 429 LLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLF 488
            L+       +N +  L NLS    +       G L  +V ++     +     AA  L 
Sbjct: 232 HLTDPSQRLVQNCLWTLRNLSDA--ATKQEGMEGLLGTLVQLLGSD-DINVVTCAAGILS 288

Query: 489 YIASIEEYRKLIGENPEAIPALVDMVRDGTDRS--KKNALVAIFGLLMHSGNHWR----F 542
            +       K++      I ALV  V    DR    + A+ A+  L              
Sbjct: 289 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAV 348

Query: 543 LAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTS 602
                +P+++ LL       LI  ++ ++  LA        +   GA+  ++++L     
Sbjct: 349 RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQ 408

Query: 603 RAGKEYCVSLLLALCINGGAN 623
              +   +       + G   
Sbjct: 409 DTQRRTSMGGTQQQFVEGVRM 429

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 93.5 bits (232), Expect = 6e-20
 Identities = 36/222 (16%), Positives = 74/222 (33%), Gaps = 26/222 (11%)

Query: 413 NRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALL-NLSKHCKSKSMVVESGGLDFIVDMV 471
            ++ +     +P ++KLL          A   L+ NL+    + + + E G +  +V ++
Sbjct: 344 AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 403

Query: 472 KKG---------------------LKVEARQHAAATLFYIASIEEYRKLIGENPEAIPAL 510
            +                         E  +     L  +A     R +I      IP  
Sbjct: 404 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGL-NTIPLF 462

Query: 511 VDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAV 570
           V ++    +  ++ A   +  L           A GA   L  LL S + E + T + AV
Sbjct: 463 VQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN-EGVATYAAAV 521

Query: 571 LATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSL 612
           L  ++E  D         ++++   +  +      +   + L
Sbjct: 522 LFRMSE--DKPQDYKKRLSVELTSSLFRTEPMAWNETADLGL 561

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 78.4 bits (193), Expect = 3e-15
 Identities = 22/131 (16%), Positives = 50/131 (38%), Gaps = 8/131 (6%)

Query: 413 NRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVK 472
           NR  +  +  IP  ++LL S   + Q  A   L  L++  ++   +   G    + +++ 
Sbjct: 449 NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH 508

Query: 473 KGLKVEARQHAAATLFYIAS--IEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIF 530
                    +AAA LF ++    ++Y+K +     ++     + R       + A + + 
Sbjct: 509 SR-NEGVATYAAAVLFRMSEDKPQDYKKRL-----SVELTSSLFRTEPMAWNETADLGLD 562

Query: 531 GLLMHSGNHWR 541
                    +R
Sbjct: 563 IGAQGEPLGYR 573

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  123 bits (310), Expect = 3e-32
 Identities = 39/190 (20%), Positives = 81/190 (42%), Gaps = 4/190 (2%)

Query: 388 LLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLN 447
           L     +E      ++  +          +++ G +P+L++LLSS +    + A+ AL N
Sbjct: 21  LNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 80

Query: 448 LSKHCKS-KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEA 506
           ++         V+++G L  +V ++      +  Q A   L  IAS    +     +  A
Sbjct: 81  IASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGA 139

Query: 507 IPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLA-AGAVPLLLNLLTSSDSEELIT 565
           +PALV ++    ++  + AL A+  +        + +  AGA+  L  L +  + E++  
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN-EKIQK 198

Query: 566 DSLAVLATLA 575
           ++   L  L 
Sbjct: 199 EAQEALEKLQ 208

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 98.9 bits (247), Expect = 9e-24
 Identities = 41/212 (19%), Positives = 92/212 (43%), Gaps = 10/212 (4%)

Query: 413 NRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS-KSMVVESGGLDFIVDMV 471
           +         +P +++ L+S D    ++A+  L  ++         V+++G L  +V ++
Sbjct: 4   SHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL 63

Query: 472 KKGLKVEARQHAAATLFYIASI-EEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIF 530
                 +  Q A   L  IAS   E  + + +   A+PALV ++    ++  + AL A+ 
Sbjct: 64  SSP-NEQILQEALWALSNIASGGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALS 121

Query: 531 GLLMHSGNHWRFLA-AGAVPLLLNLLTSSDSE--ELITDSLAVLATLAEKLDGTIAILHH 587
            +        + +  AGA+P L+ LL+S + +  +    +L+ +A+   +     A+   
Sbjct: 122 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEA 179

Query: 588 GALDMIMKILDSCTSRAGKEYCVSLLLALCIN 619
           GAL+ + ++      +  ++     L  L  +
Sbjct: 180 GALEKLEQLQSHENEKI-QKEAQEALEKLQSH 210

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 4/82 (4%)

Query: 370 SLAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKL 429
           ++   GA+  L   +S        +   +  + +  +       +  + E G +  L +L
Sbjct: 133 AVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 188

Query: 430 LSSKDSSTQENAIAALLNLSKH 451
            S ++   Q+ A  AL  L  H
Sbjct: 189 QSHENEKIQKEAQEALEKLQSH 210

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 536 SGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLD-GTIAILHHGALDMIM 594
            G+H        +P ++  L S D +EL   +L  L+ +A   +    A++  GAL  ++
Sbjct: 2   RGSHHHHHHGSELPQMVQQLNSPDQQEL-QSALRKLSQIASGGNEQIQAVIDAGALPALV 60

Query: 595 KILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKAS 654
           ++L S  +    +  +  L  +   G   + A  V     + +L  LLS  + +  ++A 
Sbjct: 61  QLL-SSPNEQILQEALWALSNIASGGNEQIQA--VIDAGALPALVQLLSSPNEQILQEAL 117

Query: 655 ALIRIL 660
             +  +
Sbjct: 118 WALSNI 123

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179

 Score =  121 bits (304), Expect = 6e-32
 Identities = 23/71 (32%), Positives = 35/71 (49%)

Query: 278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLK 337
           PD     IS E+M++P    +G TYDR  I +  +      P T   L   +L+ NL +K
Sbjct: 104 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMK 163

Query: 338 RIIQDWSVDNG 348
            +I  +  +NG
Sbjct: 164 EVIDAFIQENG 174

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  127 bits (320), Expect = 1e-31
 Identities = 47/291 (16%), Positives = 114/291 (39%), Gaps = 10/291 (3%)

Query: 371 LAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLL 430
           ++  G +     F+     +     + + A+ +  +   +      +++ G +P  ++LL
Sbjct: 60  ISTPGVVARFVEFLKR---KENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELL 116

Query: 431 SSKDSSTQENAIAALLNLSKHCKS-KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFY 489
           SS+    QE A+ AL N++      +  V++   L  ++ +  K  ++   ++A   L  
Sbjct: 117 SSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN 176

Query: 490 IASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWR-FLAAGAV 548
           +   +       +    +  L  ++         +A  A+  L     +  +  + AG  
Sbjct: 177 LCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVC 236

Query: 549 PLLLNLLTSSDSEELITDSLAVLATLAEKLD-GTIAILHHGALDMIMKILDSCTSRAGKE 607
             L+ LL   +  ++++ +L  +  +    D  T  IL+  AL  ++ +L S      K+
Sbjct: 237 RRLVELL-MHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESI-KK 294

Query: 608 YCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIR 658
                +  +     A +  ++    ++  +L S+L     R  K+A+  I 
Sbjct: 295 EACWTISNITAGNRAQIQTVI--DANIFPALISILQTAEFRTRKEAAWAIT 343

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 86.5 bits (214), Expect = 4e-18
 Identities = 37/251 (14%), Positives = 84/251 (33%), Gaps = 8/251 (3%)

Query: 413 NRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS---KSMVVESGGLDFIVD 469
           N            +++++ SK    Q +A      L     +     ++   G +   V+
Sbjct: 12  NMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVE 71

Query: 470 MVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAI 529
            +K+      +  +A  L  IAS    +  I     A+P  ++++    +  ++ A+ A+
Sbjct: 72  FLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWAL 131

Query: 530 FGLLMHSGNHWRF-LAAGAVPLLLNLLTSSDSEELITDSLAVLATLA-EKLDGTIAILHH 587
             +   S     + L    +P LL L +  +   +  +++  L+ L   K          
Sbjct: 132 GNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVS 191

Query: 588 GALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSS 647
             L+++  +L    +          L  L       + A++     +   L  LL     
Sbjct: 192 PCLNVLSWLLFVSDTD-VLADACWALSYLSDGPNDKIQAVI--DAGVCRRLVELLMHNDY 248

Query: 648 RASKKASALIR 658
           +    A   + 
Sbjct: 249 KVVSPALRAVG 259

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 82.6 bits (204), Expect = 8e-17
 Identities = 34/229 (14%), Positives = 82/229 (35%), Gaps = 10/229 (4%)

Query: 372 AAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLS 431
                + +L+  +        ++      + +  L+         +++ G    L++LL 
Sbjct: 189 KVSPCLNVLSWLLF----VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM 244

Query: 432 SKDSSTQENAIAALLNLSKHC-KSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYI 490
             D      A+ A+ N+         +++    L  ++ ++    K   ++ A  T+  I
Sbjct: 245 HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNI 303

Query: 491 ASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNH--WRFLAAGAV 548
            +    +     +    PAL+ +++    R++K A  AI               +  G +
Sbjct: 304 TAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCI 363

Query: 549 PLLLNLLTSSDSE--ELITDSLAVLATLAEKLDGTIAILHHGALDMIMK 595
             L +LLT  DS+  ++  + L  +  L E+         +    +I +
Sbjct: 364 KPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEE 412

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 51.4 bits (123), Expect = 6e-07
 Identities = 27/168 (16%), Positives = 61/168 (36%), Gaps = 15/168 (8%)

Query: 371 LAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLL 430
           +    A++ L + +S          K +  + +  +T  +      +++    P+L+ +L
Sbjct: 272 ILNCSALQSLLHLLSS----PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISIL 327

Query: 431 SSKDSSTQENAIAALLNLSKHC--KSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLF 488
            + +  T++ A  A+ N +     +    +VE G +  + D++      +  Q A   L 
Sbjct: 328 QTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM-DSKIVQVALNGLE 386

Query: 489 YIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS 536
            I  + E  +    N   I     ++ +         L  I  L  H 
Sbjct: 387 NILRLGE--QEAKRNGTGINPYCALIEE------AYGLDKIEFLQSHE 426

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85

 Score =  104 bits (261), Expect = 3e-27
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLK 337
           PD+F  P+   +M DPV L +G   DR+ IL+     + T P   + L    L     LK
Sbjct: 12  PDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLL-NSPTDPFNRQMLTESMLEPVPELK 70

Query: 338 RIIQDWSVDN 347
             IQ W  + 
Sbjct: 71  EQIQAWMREK 80

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100

 Score =  104 bits (260), Expect = 6e-27
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLK 337
           PD+F  P+   +M DPV L +G   DR+ IL+     + T P   + L    L     LK
Sbjct: 27  PDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLTESMLEPVPELK 85

Query: 338 RIIQDW 343
             IQ W
Sbjct: 86  EQIQAW 91

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98

 Score = 98.3 bits (245), Expect = 6e-25
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 278 PDDFTCPISLEIMKDPVTLSTGH-TYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVL 336
            D+F  PI   +M DPV L +   T DR++I +   +   T P     L   ++  N  L
Sbjct: 20  CDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ-TDPFNRSPLTMDQIRPNTEL 78

Query: 337 KRIIQDWSVDNGVSIAEESG 356
           K  IQ W  +        SG
Sbjct: 79  KEKIQRWLAERKQQSGPSSG 98

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  105 bits (264), Expect = 3e-24
 Identities = 49/267 (18%), Positives = 106/267 (39%), Gaps = 11/267 (4%)

Query: 399 VAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-KSKSM 457
            A+ +  +   +      +V+ G IP+ + LL+S  +   E A+ AL N++      + +
Sbjct: 121 SAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDL 180

Query: 458 VVESGGLDFIVDMVKKG----LKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDM 513
           V++ G +D ++ ++       L     ++   TL  +   +     +    + +P LV +
Sbjct: 181 VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240

Query: 514 VRDGTDRSKKNALVAIFGLLMHSGNHWR-FLAAGAVPLLLNLLTSSDSEELITDSLAVLA 572
           +         ++  AI  L           +  G VP L+ LL  +    ++T +L  + 
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPALRAIG 299

Query: 573 TLAEKLD-GTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKS 631
            +    D  T  ++  GAL +   +L +  +   KE     +  +       +    V +
Sbjct: 300 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE-ATWTMSNITAGRQDQIQQ--VVN 356

Query: 632 PSLMGSLYSLLSQGSSRASKKASALIR 658
             L+  L  +LS+   +  K+A+  I 
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAIT 383

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 90.1 bits (223), Expect = 4e-19
 Identities = 50/237 (21%), Positives = 95/237 (40%), Gaps = 14/237 (5%)

Query: 372 AAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLS 431
           A E  +  L   +         E      + +  LT         +V+ G +P L+KLL 
Sbjct: 229 AVEQILPTLVRLLHH----NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG 284

Query: 432 SKDSSTQENAIAALLNLSKH-CKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYI 490
           + +      A+ A+ N+     +    V+++G L     ++    K   ++ A  T+  I
Sbjct: 285 ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNI 343

Query: 491 ASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNH--WRFLAAGAV 548
            +  + +     N   +P LV ++     +++K A  AI               +  G +
Sbjct: 344 TAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGII 403

Query: 549 PLLLNLLTSSDSE--ELITDSLAVLATLAEKLDGT----IAILHHGALDMIMKILDS 599
             L+NLL++ D++  ++I D+++ +   AEKL  T    I I   G LD I  +   
Sbjct: 404 EPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRH 460

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 88.5 bits (219), Expect = 1e-18
 Identities = 36/297 (12%), Positives = 112/297 (37%), Gaps = 12/297 (4%)

Query: 371 LAAEGAMKLLANFISDRLLEGTSEE-KNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKL 429
           +   GA+  L   ++   L   +      + + +  L ++             +P+L++L
Sbjct: 181 VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240

Query: 430 LSSKDSSTQENAIAALLNLSKHCKSK-SMVVESGGLDFIVDMVKKGLKVEARQHAAATLF 488
           L   D     ++  A+  L+     +  MVV+ G +  +V ++    ++     A   + 
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIG 299

Query: 489 YIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNH-WRFLAAGA 547
            I +  + +     +  A+     ++ +     +K A   +  +     +   + +  G 
Sbjct: 300 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359

Query: 548 VPLLLNLLTSSDSEELITDSLAVLATLAEK--LDGTIAILHHGALDMIMKILDSCTSRAG 605
           VP L+ +L+ +D  +   ++   +        ++  + ++H G ++ +M +L +  ++  
Sbjct: 360 VPFLVGVLSKAD-FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI- 417

Query: 606 KEYCVSLLLALCING----GANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIR 658
            +  +  +  +            ++++++    +  + +L    +    K +  LI 
Sbjct: 418 IQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 474

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 84.3 bits (208), Expect = 3e-17
 Identities = 45/264 (17%), Positives = 97/264 (36%), Gaps = 13/264 (4%)

Query: 406 LTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIA--ALLNLSKHCKSKS----MVV 459
           +       R  +++ G I  LL LL+  D ST            LS  C++K+    +  
Sbjct: 170 IAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDA 229

Query: 460 ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTD 519
               L  +V ++      E    +   + Y+      R  +      +P LV ++     
Sbjct: 230 VEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL 288

Query: 520 RSKKNALVAIFGLLMHSGNHWR-FLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKL 578
                AL AI  ++  +    +  + AGA+ +  +LLT+     +  ++   ++ +    
Sbjct: 289 PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK-TNIQKEATWTMSNITAGR 347

Query: 579 DGTI-AILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGS 637
              I  +++HG +  ++ +L     +  ++     +      G    +  LV    +   
Sbjct: 348 QDQIQQVVNHGLVPFLVGVLSKADFKT-QKEAAWAITNYTSGGTVEQIVYLVHCGII-EP 405

Query: 638 LYSLLSQGSSRASKKA-SALIRIL 660
           L +LLS   ++  +    A+  I 
Sbjct: 406 LMNLLSAKDTKIIQVILDAISNIF 429

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 81.2 bits (200), Expect = 3e-16
 Identities = 39/254 (15%), Positives = 78/254 (30%), Gaps = 11/254 (4%)

Query: 413 NRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKS--MVVESGGLDFIVDM 470
             +       +  ++K ++S +  +Q  A  A   L    K      ++ +G +   V  
Sbjct: 49  GSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSF 108

Query: 471 VKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIF 530
           + K      +  +A  L  IAS    +     +  AIPA + ++        + A+ A+ 
Sbjct: 109 LGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALG 168

Query: 531 GLLMHS-GNHWRFLAAGAVPLLLNLLTSSDSEE----LITDSLAVLATLAE-KLDGTIAI 584
            +           +  GA+  LL LL   D        + +    L+ L   K       
Sbjct: 169 NIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 228

Query: 585 LHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQ 644
                L  ++++L               +  L       +  ++     ++  L  LL  
Sbjct: 229 AVEQILPTLVRLLHHNDPE-VLADSCWAISYLTDGPNERIEMVV--KKGVVPQLVKLLGA 285

Query: 645 GSSRASKKASALIR 658
                   A   I 
Sbjct: 286 TELPIVTPALRAIG 299

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 79.7 bits (196), Expect = 1e-15
 Identities = 41/265 (15%), Positives = 98/265 (36%), Gaps = 16/265 (6%)

Query: 404 RLLTKSSIFNRSCLVEVGCIPSLLKLL-SSKDSSTQENAIAALLNLSKHCKSKSM-VVES 461
           +LL++        ++  G IP  +  L  +  S  Q  +  AL N++     ++  VV+ 
Sbjct: 83  KLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG 142

Query: 462 GGLDFIVDMVKKGLKVEARQHAAATLFYIAS-IEEYRKLIGENPEAIPALVDMVRDGTDR 520
           G +   + ++         + A   L  IA     +R L+ ++  AI  L+ ++      
Sbjct: 143 GAIPAFISLLASP-HAHISEQAVWALGNIAGDGSAFRDLVIKH-GAIDPLLALLAVPDLS 200

Query: 521 SKKNALVAIFGLLMHSGNHWR------FLAAGAVPLLLNLLTSSDSEELITDSLAVLATL 574
           +     +      + +    +            +P L+ LL  +D  E++ DS   ++ L
Sbjct: 201 TLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND-PEVLADSCWAISYL 259

Query: 575 AEKLDGTI-AILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPS 633
            +  +  I  ++  G +  ++K+L +          +  +  +          ++     
Sbjct: 260 TDGPNERIEMVVKKGVVPQLVKLLGATELPI-VTPALRAIGNIVTGTDEQTQKVI--DAG 316

Query: 634 LMGSLYSLLSQGSSRASKKASALIR 658
            +    SLL+   +   K+A+  + 
Sbjct: 317 ALAVFPSLLTNPKTNIQKEATWTMS 341

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  103 bits (258), Expect = 5e-24
 Identities = 49/219 (22%), Positives = 98/219 (44%), Gaps = 20/219 (9%)

Query: 371 LAAEGAMKLLANFISDRLLEGTSEE-KNKVAYEVRLLT-KSSIFNRSCLVEVGCIPSLLK 428
            + +G M+ L        L+  SE+ +  +A  +R L+ ++ + ++  L EVG + +L++
Sbjct: 123 CSMKGCMRALV-----AQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 177

Query: 429 LL-SSKDSSTQENAIAALLNLSKHCKS--KSMVVESGGLDFIVDMVK---KGLKVEARQH 482
                K  ST ++ ++AL NLS HC      +    G L F+V  +    +   +   + 
Sbjct: 178 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIES 237

Query: 483 AAATLFYIASI----EEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG- 537
               L  ++S+    E++R+++ EN   +  L+  ++  +     NA   ++ L   +  
Sbjct: 238 GGGILRNVSSLIATNEDHRQILREN-NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK 296

Query: 538 NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE 576
           +       GAV +L NL+  S  + +   S A L  L  
Sbjct: 297 DQEALWDMGAVSMLKNLI-HSKHKMIAMGSAAALRNLMA 334

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 91.1 bits (226), Expect = 5e-20
 Identities = 38/263 (14%), Positives = 84/263 (31%), Gaps = 21/263 (7%)

Query: 418 VEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKV 477
                +      + +        A+  L+ LS   + +  + E GGL  I ++++   ++
Sbjct: 29  AHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEM 88

Query: 478 EA----------RQHAAATLFYIASI-EEYRKLIGENPEAIPALVDMVRDGTDRSKKNAL 526
                       R++A   L  +       +  +      + ALV  ++  ++  ++   
Sbjct: 89  YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIA 148

Query: 527 VAIFGLLMHSG--NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDG--TI 582
             +  L   +   +       G+V  L+        E  +   L+ L  L+         
Sbjct: 149 SVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 208

Query: 583 AILHHGALDMIMKILDSC---TSRAGKEYCVSLL--LALCINGGANVVALLVKSPSLMGS 637
                GAL  ++  L       + A  E    +L  ++  I    +   +L ++  L  +
Sbjct: 209 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCL-QT 267

Query: 638 LYSLLSQGSSRASKKASALIRIL 660
           L   L   S      A   +  L
Sbjct: 268 LLQHLKSHSLTIVSNACGTLWNL 290

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 69.9 bits (171), Expect = 5e-13
 Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 8/145 (5%)

Query: 372 AAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTK---SSIFNRSCLVEVGCIPSLLK 428
           A +GA+  L   ++ R    T          +R ++    ++  +R  L E  C+ +LL+
Sbjct: 211 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ 270

Query: 429 LLSSKDSSTQENAIAALLNLSKHCK-SKSMVVESGGLDFIVDMVKKGLKVEARQHAAATL 487
            L S   +   NA   L NLS      +  + + G +  + +++           +AA L
Sbjct: 271 HLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAAL 329

Query: 488 FYIAS---IEEYRKLIGENPEAIPA 509
             + +    +     I     ++P+
Sbjct: 330 RNLMANRPAKYKDANIMSPGSSLPS 354

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 66.4 bits (162), Expect = 6e-12
 Identities = 29/193 (15%), Positives = 70/193 (36%), Gaps = 19/193 (9%)

Query: 371 LAAEGAMKLLANFISDRLLEGTSEEKNKVAYEV-RLLTKSSIFNRSCLVEV-GCIPSLLK 428
           L   G++K L        LE   E   K        L+     N++ +  V G +  L+ 
Sbjct: 166 LREVGSVKALMEC----ALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVG 221

Query: 429 LLSSKDSSTQ----ENAIAALLNLSKHCKS----KSMVVESGGLDFIVDMVKKGLKVEAR 480
            L+ +  +      E+    L N+S    +    + ++ E+  L  ++  +K    +   
Sbjct: 222 TLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIV 280

Query: 481 QHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHW 540
            +A  TL+ +++     +    +  A+  L +++          +  A+  L+ +    +
Sbjct: 281 SNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY 340

Query: 541 RF----LAAGAVP 549
           +         ++P
Sbjct: 341 KDANIMSPGSSLP 353

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  104 bits (260), Expect = 1e-23
 Identities = 51/282 (18%), Positives = 107/282 (37%), Gaps = 11/282 (3%)

Query: 387 RLLEGTSEE-KNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAAL 445
           +LL   S E K +  + +  +   S   R  +++   +  +L L +S   S    A   L
Sbjct: 180 QLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTL 239

Query: 446 LNLSKHCK-SKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENP 504
            NL +  K      V S  L  +  ++      E    A   + Y++   +       + 
Sbjct: 240 SNLCRGKKPQPDWSVVSQALPTLAKLIYSM-DTETLVDACWAISYLSDGPQEAIQAVIDV 298

Query: 505 EAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWR-FLAAGAVPLLLNLLTSSDSEEL 563
                LV+++   +   +  AL A+  ++  +    +  + AG +P L  LL+S   E +
Sbjct: 299 RIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK-ENI 357

Query: 564 ITDSLAVLATL-AEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGG- 621
             ++   ++ + A   +   A++    +  ++K+L+    +  K+     +      G  
Sbjct: 358 KKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKT-KKEACWAISNASSGGLQ 416

Query: 622 -ANVVALLVKSPSLMGSLYSLLSQGSSRASKKA-SALIRILH 661
             +++  LV     +  L  LL    +R  +    AL  IL 
Sbjct: 417 RPDIIRYLVSQG-CIKPLCDLLEIADNRIIEVTLDALENILK 457

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 99.7 bits (248), Expect = 4e-22
 Identities = 47/264 (17%), Positives = 99/264 (37%), Gaps = 8/264 (3%)

Query: 400 AYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS-KSMV 458
           A+ +  +   +      +V+   +P  ++LL +     +E AI AL N++      +  V
Sbjct: 152 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV 211

Query: 459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGT 518
           ++   ++ I+ +     K    + A  TL  +   ++ +       +A+P L  ++    
Sbjct: 212 LQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD 270

Query: 519 DRSKKNALVAIFGLLMHSGNH-WRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK 577
             +  +A  AI  L           +       L+ LL S +S  + T +L  +  +   
Sbjct: 271 TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL-SHESTLVQTPALRAVGNIVTG 329

Query: 578 LDG-TIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMG 636
            D  T  +++ G L  +  +L S      KE     +  +       + A++    +L+ 
Sbjct: 330 NDLQTQVVINAGVLPALRLLLSSPKENIKKE-ACWTISNITAGNTEQIQAVI--DANLIP 386

Query: 637 SLYSLLSQGSSRASKKASALIRIL 660
            L  LL     +  K+A   I   
Sbjct: 387 PLVKLLEVAEYKTKKEACWAISNA 410

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 90.5 bits (224), Expect = 4e-19
 Identities = 44/283 (15%), Positives = 112/283 (39%), Gaps = 12/283 (4%)

Query: 384 ISDRLLEGTSEEKNKVAYEVR-LLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSST-QENA 441
           ++ +L     +E+     + R +L++        +++ G +P L++ +        Q  A
Sbjct: 92  MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEA 151

Query: 442 IAALLNLSKHC-KSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIA-SIEEYRKL 499
             AL N++        +VV++  +   + ++  G  VE ++ A   L  +A    +YR  
Sbjct: 152 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDSTDYRDY 210

Query: 500 IGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRF-LAAGAVPLLLNLLTSS 558
           + +   A+  ++ +         + A   +  L         + + + A+P L  L+ S 
Sbjct: 211 VLQC-NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 269

Query: 559 DSEELITDSLAVLATLAEKLDGTI-AILHHGALDMIMKILDSCTSRAGKEYCVSLLLALC 617
           D  E + D+   ++ L++     I A++       ++++L   ++   +   +  +  + 
Sbjct: 270 D-TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLV-QTPALRAVGNIV 327

Query: 618 INGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRIL 660
                    ++  +  ++ +L  LLS       K+A   I  +
Sbjct: 328 TGNDLQTQVVI--NAGVLPALRLLLSSPKENIKKEACWTISNI 368

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 79.7 bits (196), Expect = 8e-16
 Identities = 43/253 (16%), Positives = 98/253 (38%), Gaps = 10/253 (3%)

Query: 413 NRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS--KSMVVESGGLDFIVDM 470
            +        +P + + L+S D   Q +A      +          +V+++G +  +V+ 
Sbjct: 79  QQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF 138

Query: 471 VKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIF 530
           +++      +  AA  L  IAS    +  +  + +A+P  + ++  G+   K+ A+ A+ 
Sbjct: 139 MRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALG 198

Query: 531 GLLMHSGNH-WRFLAAGAVPLLLNLLTSSDSEEL--ITDSLAVLATLAEKLDGTIAILHH 587
            +   S ++    L   A+  +L L  S+    +   T +L+ L     K       +  
Sbjct: 199 NVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR--GKKPQPDWSVVS 256

Query: 588 GALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSS 647
            AL  + K++ S  +    + C    ++   +G    +  ++    +   L  LLS  S+
Sbjct: 257 QALPTLAKLIYSMDTETLVDAC--WAISYLSDGPQEAIQAVIDV-RIPKRLVELLSHEST 313

Query: 648 RASKKASALIRIL 660
                A   +  +
Sbjct: 314 LVQTPALRAVGNI 326

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 59.3 bits (143), Expect = 3e-09
 Identities = 29/203 (14%), Positives = 72/203 (35%), Gaps = 21/203 (10%)

Query: 375 GAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKD 434
              K L   +S      ++  +      V  +   +      ++  G +P+L  LLSS  
Sbjct: 299 RIPKRLVELLSH----ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK 354

Query: 435 SSTQENAIAALLNLSKH-CKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASI 493
            + ++ A   + N++    +    V+++  +  +V +++   + + ++ A   +   +S 
Sbjct: 355 ENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSG 413

Query: 494 EEYRKLIGE---NPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWR--------- 541
              R  I     +   I  L D++    +R  +  L A+  +L                 
Sbjct: 414 GLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINEN 473

Query: 542 ---FLAAGAVPLLLNLLTSSDSE 561
                 AG +  + N   + + +
Sbjct: 474 ADFIEKAGGMEKIFNCQQNENDK 496

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 99.7 bits (248), Expect = 3e-22
 Identities = 50/218 (22%), Positives = 98/218 (44%), Gaps = 20/218 (9%)

Query: 372 AAEGAMKLLANFISDRLLEGTSEE-KNKVAYEVRLLT-KSSIFNRSCLVEVGCIPSLLKL 429
           + +G M+ L        L+  SE+ +  +A  +R L+ ++ + ++  L EVG + +L++ 
Sbjct: 240 SMKGCMRALV-----AQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMEC 294

Query: 430 L-SSKDSSTQENAIAALLNLSKHCKS--KSMVVESGGLDFIVDMVK---KGLKVEARQHA 483
               K  ST ++ ++AL NLS HC      +    G L F+V  +    +   +   +  
Sbjct: 295 ALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESG 354

Query: 484 AATLFYIASI----EEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNH 539
              L  ++S+    E++R+++ EN   +  L+  ++  +     NA   ++ L   +   
Sbjct: 355 GGILRNVSSLIATNEDHRQILREN-NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKD 413

Query: 540 WRFLA-AGAVPLLLNLLTSSDSEELITDSLAVLATLAE 576
              L   GAV +L NL+  S  + +   S A L  L  
Sbjct: 414 QEALWDMGAVSMLKNLI-HSKHKMIAMGSAAALRNLMA 450

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 85.8 bits (212), Expect = 7e-18
 Identities = 39/290 (13%), Positives = 85/290 (29%), Gaps = 29/290 (10%)

Query: 395 EKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS 454
           E   +    ++                 +      + +        A+  L+ LS   + 
Sbjct: 122 EIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEH 181

Query: 455 KSMVVESGGLDFIVDMVKKGLKVEA----------RQHAAATLFYIASIEEYRK-LIGEN 503
           +  + E GGL  I ++++   ++            R++A   L  +   +   K  +   
Sbjct: 182 RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 241

Query: 504 PEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS--GNHWRFLAAGAVPLLLNLLTSSDSE 561
              + ALV  ++  ++  ++     +  L   +   +       G+V  L+        E
Sbjct: 242 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE 301

Query: 562 ELITDSLAVLATLAEKLDG--TIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCIN 619
             +   L+ L  L+              GAL  ++  L   +         S    L   
Sbjct: 302 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGIL--- 358

Query: 620 GGANVVALLVKSPS---------LMGSLYSLLSQGSSRASKKASALIRIL 660
              NV +L+  +            + +L   L   S      A   +  L
Sbjct: 359 --RNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 406

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 65.4 bits (159), Expect = 2e-11
 Identities = 29/179 (16%), Positives = 67/179 (37%), Gaps = 17/179 (9%)

Query: 371 LAAEGAMKLLANFISDRLLEGTSEEKNKVAYEV-RLLTKSSIFNRSCLVEV-GCIPSLLK 428
           L   G++K L        LE   E   K        L+     N++ +  V G +  L+ 
Sbjct: 282 LREVGSVKALMEC----ALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVG 337

Query: 429 LLSSKDSST----QENAIAALLNLSKHCKS----KSMVVESGGLDFIVDMVKKGLKVEAR 480
            L+ +  +      E+    L N+S    +    + ++ E+  L  ++  +K    +   
Sbjct: 338 TLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIV 396

Query: 481 QHAAATLFYI-ASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGN 538
            +A  TL+ + A   + ++ + +   A+  L +++          +  A+  L+ +   
Sbjct: 397 SNACGTLWNLSARNPKDQEALWDM-GAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 63.1 bits (153), Expect = 1e-10
 Identities = 45/295 (15%), Positives = 87/295 (29%), Gaps = 51/295 (17%)

Query: 413 NRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVK 472
                 +V  + SLL +L + D   +++    LL +S    S   + +SG L  ++ ++ 
Sbjct: 24  TSHLGTKVEMVYSLLSMLGTHD---KDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLH 80

Query: 473 KGLK-----------VEARQHAAATLFYIAS--------------------IEEY----R 497
              K            EAR  A+A L  I                      I  Y     
Sbjct: 81  GNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCW 140

Query: 498 KLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTS 557
           +    +   +    + +    +     A+  +  L     +       G +  +  LL  
Sbjct: 141 EWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQV 200

Query: 558 SDSEELITDS--------LAVLA----TLAEKLDGTIAILHHGALDMIMKILDSCTSRAG 605
                 +T+          A +A    T  +  +        G +  ++  L S  S   
Sbjct: 201 DCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS-ESEDL 259

Query: 606 KEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRIL 660
           ++   S+L  L      N    L +  S+   +   L        K   + +  L
Sbjct: 260 QQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL 314

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968

 Score = 94.1 bits (233), Expect = 6e-20
 Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 2/107 (1%)

Query: 238 LSSLMGFLSYCKCIMFDLVDNEASQQVSKKCCNNMLGGLTPDDFTCPISLEIMKDPVTL- 296
           L    G  S           N+A +Q       ++  G  PD+F  P+   IMKDPV L 
Sbjct: 849 LGRKTGLASPEFIEKLLNFANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMKDPVILP 908

Query: 297 STGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDW 343
           ++    DR++I       +ST P     L+ +++  N  L++ I  +
Sbjct: 909 ASKMNIDRSTIKAHLL-SDSTDPFNRMPLKLEDVTPNEELRQKILCF 954

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 83.1 bits (205), Expect = 1e-19
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 9/76 (11%)

Query: 277 TPDDFTCPISLEIMKDPVTLST-GHTYDRASILKWFRAGNS-----TCPKTG---ERLQS 327
               FTCPI+ E MK PV     GHTY+  +I++   +         CP+ G     ++ 
Sbjct: 4   GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63

Query: 328 KELLVNLVLKRIIQDW 343
            +L+ +  L+R I++ 
Sbjct: 64  SDLIQDEALRRAIENH 79

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 88.5 bits (218), Expect = 2e-18
 Identities = 55/328 (16%), Positives = 105/328 (32%), Gaps = 57/328 (17%)

Query: 388 LLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLN 447
           L       K+  A  ++ L   +   ++ + ++  IP L+ LL          A  AL N
Sbjct: 57  LGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKN 116

Query: 448 LS--KHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPE 505
           +S  +   +K  +    G+  +V +++K   ++  +    TL+ ++S +  +  I +   
Sbjct: 117 ISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD--H 174

Query: 506 AIPALVDMV--------RDGTDRSKKN--------------------------------- 524
           A+ AL D V        R+  +  K                                   
Sbjct: 175 ALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECD 234

Query: 525 ----ALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDG 580
               AL+ I    +   +    L    V LL NL      E    +     A       G
Sbjct: 235 GLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTG 294

Query: 581 TI------AILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGG--ANVVALLVKSP 632
           T        +     + + + +L    + A  E     +  LC         +   ++  
Sbjct: 295 TSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQE 354

Query: 633 SLMGSLYSLLSQGSSRASKKASALIRIL 660
             + ++  LL+    R  K AS  +R L
Sbjct: 355 KALSAIADLLTNEHERVVKAASGALRNL 382

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 72.7 bits (177), Expect = 1e-13
 Identities = 40/223 (17%), Positives = 81/223 (36%), Gaps = 27/223 (12%)

Query: 421 GCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-KSKSMVVESGGLDFIVDMVKKGLKVEA 479
             +P ++ +L  +  + + NA A L +L     K K+ V +  G+  +V ++    K E 
Sbjct: 48  PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP-KKEV 106

Query: 480 RQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDGTDRS-KKNALVAIFGLLMHSG 537
              A   L  I+    +  K+  +N + +PALV ++R   D    +     ++ L  H  
Sbjct: 107 HLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS 166

Query: 538 NHWRFLAAGAVPLLLNLLT----------------SSDSEELITDSLAVLATLAEKLD-- 579
                +      L   ++                   + E ++T++   L  ++ +    
Sbjct: 167 IKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEA 226

Query: 580 GTIAILHHGALDMIMKILDSCT-----SRAGKEYCVSLLLALC 617
                   G +D ++ I+ +            E CV LL  L 
Sbjct: 227 RRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 66.9 bits (162), Expect = 1e-11
 Identities = 32/252 (12%), Positives = 79/252 (31%), Gaps = 48/252 (19%)

Query: 414 RSCLVEVGCIPSLLKLLSS------KDSSTQENAIAALLNLSKHCKS------------- 454
           R      G + +L+ ++ +       DS   EN +  L NLS                  
Sbjct: 228 RKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAP 287

Query: 455 -------------KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASI-----EEY 496
                          ++ +   +   + ++K+       + +A  +  + +         
Sbjct: 288 NVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYI 347

Query: 497 RKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLT 556
           R  + +  +A+ A+ D++ +  +R  K A  A+  L + + N    +   A+P L+  L 
Sbjct: 348 RSALRQE-KALSAIADLLTNEHERVVKAASGALRNLAVDARNK-ELIGKHAIPNLVKNLP 405

Query: 557 SSDSEELITDSLAVLATLAEKL--------DGTIAILHHGALDMIMKILDSCT-SRAGKE 607
                     S   + ++   +        +    +     ++ ++ I  S   S     
Sbjct: 406 GGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVR 465

Query: 608 YCVSLLLALCIN 619
               +L  +   
Sbjct: 466 AAALVLQTIWGY 477

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 65.0 bits (157), Expect = 4e-11
 Identities = 21/148 (14%), Positives = 54/148 (36%), Gaps = 10/148 (6%)

Query: 408 KSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFI 467
               + RS L +   + ++  LL+++     + A  AL NL+   ++K ++ +    + +
Sbjct: 342 TYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLV 401

Query: 468 ------VDMVKKGLKVEARQHAAATLFYIASI-EEYRKLIGENPEAIPALVDMVRDG--T 518
                           +       T+  + +   E  K + E  + I  LV + + G  +
Sbjct: 402 KNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRET-QGIEKLVLINKSGNRS 460

Query: 519 DRSKKNALVAIFGLLMHSGNHWRFLAAG 546
           ++  + A + +  +  +          G
Sbjct: 461 EKEVRAAALVLQTIWGYKELRKPLEKEG 488

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 83.5 bits (206), Expect = 3e-18
 Identities = 29/186 (15%), Positives = 69/186 (37%), Gaps = 21/186 (11%)

Query: 400 AYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-KSKSMV 458
           A  ++         R  + ++  I  LL+LL  ++   Q     AL NL      +K  V
Sbjct: 31  ATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEV 90

Query: 459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMV---R 515
            E  G+  ++ ++K+   +E ++     L+ ++S ++ + L+    EA+  L + +    
Sbjct: 91  AELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT--EALLTLTENIIIPF 148

Query: 516 DGTDRSK-------------KNALVAIFGLLMHSGNHWRFL--AAGAVPLLLNLLTSSDS 560
            G                   N    +  +     +  + +    G +  L++ +  + +
Sbjct: 149 SGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIA 208

Query: 561 EELITD 566
           +    D
Sbjct: 209 DYQPDD 214

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 68.1 bits (166), Expect = 6e-13
 Identities = 24/220 (10%), Positives = 66/220 (30%), Gaps = 26/220 (11%)

Query: 423 IPSLLKLLSSKDS--STQENAIAALLNLSKHCK-SKSMVVESGGLDFIVDMVKKGLKVEA 479
           +   + +L +     S    A   + +       ++  V +  G+  ++ ++K     + 
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ-NEDV 68

Query: 480 RQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNH 539
           ++     L  +   +   KL       +P L+ +++   D   K  +  +   L  +   
Sbjct: 69  QRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL 128

Query: 540 WRFLAAGAVPLLLNLL---------------TSSDSEELITDSLAVLATLAEKLDGTIAI 584
              +   A+  L   +                     ++  +    L  ++         
Sbjct: 129 KNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKA 188

Query: 585 L--HHGALDMIMKILDSCTSR-----AGKEYCVSLLLALC 617
           +    G +D ++  +    +         E CV +L  L 
Sbjct: 189 MRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 83.8 bits (207), Expect = 5e-18
 Identities = 37/190 (19%), Positives = 67/190 (35%), Gaps = 12/190 (6%)

Query: 162 KAIFETDPDDKRVLNDVIRILGRFEDGIRPDKSEVKRVLDYLGITKWSQCNQEVKFLDSE 221
           +  +    + +    D I    R     R +  E +R+     +          + + +E
Sbjct: 96  QRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHS-----YLTRLIAAE 150

Query: 222 ITIEYLNVDKRSELALLSSLMGFLS---YCKCIMFDLVDNEASQQVSKKCCNNMLGGLTP 278
              E     +  E       +         K   +    +E   QV +K     +    P
Sbjct: 151 RERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDI----P 206

Query: 279 DDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKR 338
           D     IS E+M++P    +G TYDR  I +  +      P T   L  ++L+ NL +K 
Sbjct: 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKE 266

Query: 339 IIQDWSVDNG 348
           +I  +  +NG
Sbjct: 267 VIDAFISENG 276

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 84.5 bits (208), Expect = 2e-17
 Identities = 39/264 (14%), Positives = 81/264 (30%), Gaps = 19/264 (7%)

Query: 423 IPSLLKLLSSKDSSTQENAIAALLNLSKHC-KSKSMVVESGGLDFIVDMVKKGLKVEARQ 481
           IP  ++ LSS+D   Q      + +       +K  V + GG+  +VD+++       +Q
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP-NQNVQQ 62

Query: 482 HAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWR 541
            AA  L  +       KL       I   V ++R   +   +  L  +   L  +     
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 542 FLAAGAVPLLLNLL---------------TSSDSEELITDSLAVLATLAEKLDGTIAILH 586
            L A A+P+L + +                     E+  ++   L  L+    G   + +
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 587 HGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGS 646
           +  L   +         A +    S+   +C+    N+   L              ++ +
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCV--LHNLSYRLDAEVPTRYRQLEYNARNA 240

Query: 647 SRASKKASALIRILHEFYERHSSG 670
                          +    +   
Sbjct: 241 YTEKSSTGCFSNKSDKMMNNNYDC 264

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 83.3 bits (205), Expect = 4e-17
 Identities = 46/297 (15%), Positives = 96/297 (32%), Gaps = 31/297 (10%)

Query: 388 LLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLN 447
           L     + +   AY ++         +  + ++G I  L+ LL S + + Q+ A  AL N
Sbjct: 11  LSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRN 70

Query: 448 LSKHC-KSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEA 506
           L      +K       G+   V ++++    E ++     L+ ++S +E ++ +    +A
Sbjct: 71  LVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA--DA 128

Query: 507 IPALVDMV----------------RDGTDRSKKNALVAIFGLLMHSGNHWRFL-AAGAVP 549
           +P L D V                         NA   +  L             +G + 
Sbjct: 129 LPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLID 188

Query: 550 LLLNLLTSSDSEELITD-SLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEY 608
            L+  + +  +     D S+     +   L   +          +     +  +      
Sbjct: 189 SLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTG 248

Query: 609 CVSLLLALCIN-GGANVVALLVKSPSLMGSLY---------SLLSQGSSRASKKASA 655
           C S      +N      +     +P   G LY         +L+ +    A+ +A A
Sbjct: 249 CFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACA 305

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 64.9 bits (157), Expect = 3e-11
 Identities = 30/183 (16%), Positives = 71/183 (38%), Gaps = 17/183 (9%)

Query: 407 TKSSIFNRSCLVEVGCIPSLLKLL-SSKDSSTQENAIAALLNLSKHCKSKS------MVV 459
            +++      L     I + L L+  SK  +T E    AL NL+      S      + +
Sbjct: 269 EETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGL 328

Query: 460 ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTD 519
           +  GL  I  +++ G   +  +  A+ L  ++      +++G   +  P +  ++   T 
Sbjct: 329 KEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHPLLHRVMGN--QVFPEVTRLLTSHTG 385

Query: 520 RSKK------NALVAIFGLLMHSG-NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLA 572
            +        +A   +  L+        ++ ++  +  ++NL  SS S +    +  +L+
Sbjct: 386 NTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLS 445

Query: 573 TLA 575
            + 
Sbjct: 446 DMW 448

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 63.7 bits (154), Expect = 9e-11
 Identities = 17/138 (12%), Positives = 49/138 (35%), Gaps = 7/138 (5%)

Query: 408 KSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFI 467
            SS  ++   ++   +P + +LL S +S    +  + L N+S+H     ++      +  
Sbjct: 318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVT 377

Query: 468 V----DMVKKGLKVEARQHAAATLFYIA-SIEEYRKLIGENPEAIPALVDMVRDG-TDRS 521
                         +    A  T+  +  S  +  K    +   +  ++++ R   + ++
Sbjct: 378 RLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSS-SMLNNIINLCRSSASPKA 436

Query: 522 KKNALVAIFGLLMHSGNH 539
            + A + +  +       
Sbjct: 437 AEAARLLLSDMWSSKELQ 454

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267

 Score = 81.2 bits (199), Expect = 4e-17
 Identities = 28/255 (10%), Positives = 83/255 (32%), Gaps = 13/255 (5%)

Query: 105 TREGARLWMLMKSDRVSNQLRLFIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAI 164
             +  + +  + +  +SN  +   + I   ++ L  +    +  ++E V  +    +   
Sbjct: 15  HPKSGKYFHNLHARDLSNIYQQCYKQIDETINQLVDSTSPSTIGIEEQVADITSTYKLLS 74

Query: 165 FETDPDDKRVLNDVIRILGRFEDGIRPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEITI 224
              + +       +  +   F+              D     + +       +L+     
Sbjct: 75  -TYESESNSFDEHIKDLKKNFKQSSDACPQIDLSTWDKYRTGELTAPKLSELYLNMPTPE 133

Query: 225 EYLNVDKRSELALLSSLMGFLSYCKCIMFDLVDNEASQQVSKKCCNNMLGGLTPDDFTCP 284
               V+    L +L  L    +   C++ DL +      +  +            + TCP
Sbjct: 134 PATMVNNTDTLKILKVLPYIWNDPTCVIPDLQNPADEDDLQIEG--------GKIELTCP 185

Query: 285 ISLEIMKDPVTLST-GHTYDRASILKWFRAGNS-TCPKTG--ERLQSKELLVNLVLKRII 340
           I+ +  + P+      H +DR  I  + +   +  CP+    + +  ++ + + +++   
Sbjct: 186 ITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRC 245

Query: 341 QDWSVDNGVSIAEES 355
           +   +       + S
Sbjct: 246 KIAKMKESQEQDKRS 260

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 81.8 bits (201), Expect = 3e-16
 Identities = 52/326 (15%), Positives = 103/326 (31%), Gaps = 48/326 (14%)

Query: 371 LAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLL 430
           +A EG ++++       +     E + +VA E  +   S       L E   +  L +L 
Sbjct: 286 VAREGILQMIL-----AMATTDDELQQRVACECLIAASSKKDKAKALCE-QGVDILKRLY 339

Query: 431 SSKDSSTQENAIAALLNLSKHC--KSKSMVVESGGLDFIVDMVKKGL-----KVEARQHA 483
            SK+   +  A+  L  L  +    +       G    + +  ++ L       + R+ A
Sbjct: 340 HSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWA 399

Query: 484 AATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRF- 542
           A  L Y+    E ++ + E+  +I AL+D+ R G        +     L           
Sbjct: 400 ADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLP 459

Query: 543 --------------------------------LAAGAVPLLLNLLTSSDSEELITDSLAV 570
                                              G    L  L   ++S         V
Sbjct: 460 EMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALA-KTESHNSQELIARV 518

Query: 571 LATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVK 630
           L  +    +    ++  G +  ++++    T + GK +    L  + I     V     +
Sbjct: 519 LNAVCGLKELRGKVVQEGGVKALLRMALEGTEK-GKRHATQALARIGITINPEVSFSGQR 577

Query: 631 SPSLMGSLYSLLSQGSSRASKKASAL 656
           S  ++  L +LL Q  +      S +
Sbjct: 578 SLDVIRPLLNLLQQDCTALENFESLM 603

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 81.0 bits (199), Expect = 5e-16
 Identities = 36/253 (14%), Positives = 88/253 (34%), Gaps = 7/253 (2%)

Query: 412 FNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMV 471
              + L   G   +L  L  ++  ++QE     L  +    + +  VV+ GG+  ++ M 
Sbjct: 486 KRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMA 545

Query: 472 KKGLKVEARQHAAATLFYIASIEEYRKLIGENPE--AIPALVDMVR-DGTDRSKKNALVA 528
            +G + + ++HA   L  I                  I  L+++++ D T      +L+A
Sbjct: 546 LEGTE-KGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMA 604

Query: 529 IFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDG-TIAILHH 587
           +  L   + +  + +        +      D   L   +   L  L    D   +   ++
Sbjct: 605 LTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNN 664

Query: 588 GALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSS 647
             +  +  + +            +  LA+  +        ++   S +  L++L++  S 
Sbjct: 665 DRVKFLALLCEDEDEETATA--CAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSP 722

Query: 648 RASKKASALIRIL 660
               +   +I  +
Sbjct: 723 AVQHRGIVIILNM 735

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 45.2 bits (106), Expect = 7e-05
 Identities = 15/110 (13%), Positives = 38/110 (34%), Gaps = 3/110 (2%)

Query: 404 RLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS-KSMVVESG 462
            + + S       L     +  L  L+++   + Q   I  +LN+    +     + E+ 
Sbjct: 691 IITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETD 750

Query: 463 GLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVD 512
            ++ +  +  +       +        +A+ E Y ++I  +  A    V 
Sbjct: 751 IMELLSGLG-QLPDDTRAKAREVATQCLAAAERY-RIIERSDNAEIPDVF 798

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 72.4 bits (177), Expect = 4e-14
 Identities = 31/252 (12%), Positives = 82/252 (32%), Gaps = 10/252 (3%)

Query: 377 MKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLL-KLLSSKDS 435
           +       +    +   +++ + A E+      ++ N +   ++  +  L+ + L +  +
Sbjct: 37  LSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA 96

Query: 436 STQENAIAALLNLSKHC-KSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE 494
             +  A   +   S++    +  V+  G L  ++ ++ +      R  A   +  +   +
Sbjct: 97  GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQ 156

Query: 495 EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS-GNHWRFLAAGAVPLLLN 553
           E   L     +    L+  ++    + K  +   +  LL+    +     + G V  L+ 
Sbjct: 157 EAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA 216

Query: 554 LLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYC---- 609
           L+  ++        L  L +L       +       L +   +   C      E      
Sbjct: 217 LV-RTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEEL 275

Query: 610 --VSLLLALCIN 619
                LL  C +
Sbjct: 276 EFCEKLLQTCFS 287

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 54.6 bits (131), Expect = 3e-08
 Identities = 17/136 (12%), Positives = 42/136 (30%), Gaps = 5/136 (3%)

Query: 371 LAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLL 430
           +   GA++ L   +     +     + K  + +  L +         + +     L++ +
Sbjct: 120 VLGLGALRKLLRLLDR---DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM 176

Query: 431 SSKDSSTQENAIAALLNLSKHCKS-KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFY 489
             +    +  +   L NL       K  +   G +  +V +V+        +H    L  
Sbjct: 177 QQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE-HSPFHEHVLGALCS 235

Query: 490 IASIEEYRKLIGENPE 505
           + +           PE
Sbjct: 236 LVTDFPQGVRECREPE 251

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 6/97 (6%)

Query: 371 LAAEGAMKLLANFISDRLLEGTSEE-KNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKL 429
                   +L      R ++   ++ K K A+ ++ L      ++  L  +G +  L+ L
Sbjct: 163 FLRLDGFSVLM-----RAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVAL 217

Query: 430 LSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDF 466
           + ++ S   E+ + AL +L               L  
Sbjct: 218 VRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGL 254

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 44.6 bits (105), Expect = 6e-05
 Identities = 26/170 (15%), Positives = 63/170 (37%), Gaps = 4/170 (2%)

Query: 493 IEEYRKLIGENPEAIPALVDMVRDGTDRS-KKNALVAIFGLLMHSGNHWRFLAAGAVPLL 551
           +E+ +  +    + +P          D+  ++ AL  +  L  +  N   F     + LL
Sbjct: 27  VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLL 86

Query: 552 LNLLTSSDSEELITDSLAVLATLAEKL-DGTIAILHHGALDMIMKILDSCTSRAGKEYCV 610
           +     + +  L   +  ++ T ++ +      +L  GAL  ++++LD       +   +
Sbjct: 87  VGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKAL 146

Query: 611 SLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRIL 660
             +  L     A ++  L         L   + Q   +   K++ L++ L
Sbjct: 147 FAISCLVREQEAGLLQFL--RLDGFSVLMRAMQQQVQKLKVKSAFLLQNL 194

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61

 Score = 64.7 bits (158), Expect = 2e-13
 Identities = 10/52 (19%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 281 FTCPISLEIMKDPV-TLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELL 331
             C IS ++ + PV +  +   ++++ + ++ +      P T E L  +E++
Sbjct: 4   MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIV 54

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 61.9 bits (150), Expect = 6e-12
 Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 7/72 (9%)

Query: 279 DDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCP-------KTGERLQSKELL 331
            +  C I +EI+ +PVTL   HT  +          +  CP               +  L
Sbjct: 14  SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSL 73

Query: 332 VNLVLKRIIQDW 343
           VN+ L  IIQ  
Sbjct: 74  VNVELWTIIQKH 85

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.0 bits (165), Expect = 8e-12
 Identities = 81/574 (14%), Positives = 168/574 (29%), Gaps = 154/574 (26%)

Query: 22  ESISPSTLLISLIDLAHDICTYKSEFFSTN----KRNALKAIRQVHNLLIFLEELRVESA 77
           E   PS +    I+        +   ++ N    K N +  ++    L   L ELR    
Sbjct: 101 EQRQPSMMTRMYIE-------QRDRLYNDNQVFAKYN-VSRLQPYLKLRQALLELR---- 148

Query: 78  DIPGSLVISLSELH---------LTFQRIRYLLEDCTREGARLWMLMKSDRVSNQLRLFI 128
             P   V+    +          +           C  +    W+ +K+      +   +
Sbjct: 149 --PAKNVL----IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202

Query: 129 RAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAIFETDPDDKR---VLNDVIRILGRF 185
           + +   +D    +  D SS +K  +  +  QA           +    VL +V       
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSI--QAELRRLLKSKPYENCLLVLLNV------- 253

Query: 186 EDGIRPDKSEVKRVLDYLGITKWSQCNQEVKFL----DSEITIEYLNVDKRSELALLSSL 241
           ++          +  +   +     C    K L      ++T ++L+    + ++L    
Sbjct: 254 QN---------AKAWNAFNL----SC----KILLTTRFKQVT-DFLSAATTTHISLDHHS 295

Query: 242 MGFLSYCKCIMFDLVDNEASQQVSKKCCNNMLGGLTPDDFTC-P--ISL--EIMKDPVTL 296
           M                +  + +  K  +     L  +  T  P  +S+  E ++D +  
Sbjct: 296 MTL------------TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL-- 341

Query: 297 STGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSIAEESG 356
               T+D      W            + +   +L        II+  S++  +  AE   
Sbjct: 342 ---ATWDN-----W------------KHVNCDKL------TTIIES-SLNV-LEPAEYRK 373

Query: 357 H--------KNRDITRTVLA---GSLAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRL 405
                     +  I   +L+     +     M ++       L+E   +E       + L
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433

Query: 406 LTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLN------LSKHCKSKSMVV 459
             K  + N   L       S++   +   +   ++ I   L+      +  H K+     
Sbjct: 434 ELKVKLENEYALHR-----SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488

Query: 460 ESGG-------LDFIVDMVKK-GLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALV 511
                        F+   ++       A      TL     ++ Y+  I +N      LV
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL---QQLKFYKPYICDNDPKYERLV 545

Query: 512 DMVRD-----GTD--RSKKNALVAIFGLLMHSGN 538
           + + D       +   SK   L+ I   LM    
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLRI--ALMAEDE 577

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.9 bits (152), Expect = 2e-10
 Identities = 83/498 (16%), Positives = 155/498 (31%), Gaps = 124/498 (24%)

Query: 150 KELVDLVMRQARKAIFETDPDDKRVLNDVIRILGRFE-DGIRPDKSEVKRVLDYLGITKW 208
           K+++  V   A    F  + D K V +    IL + E D I   K  V   L        
Sbjct: 19  KDILS-VFEDA----FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73

Query: 209 SQCNQEVKFLDSEITIEY--LNVDKRSELALLSSLMGFLSYCKCIMFDLVDNEASQQVSK 266
            Q     KF++  + I Y  L    ++E    S +       +  +++     A   VS+
Sbjct: 74  KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133

Query: 267 KCC----NNMLGGLTPDDFTCPISLEIM----KDPVTLSTGHTYDRASILK----WFRAG 314
                     L  L P      + ++ +    K  V L    +Y     +     W    
Sbjct: 134 LQPYLKLRQALLELRPAKN---VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190

Query: 315 NSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSIAEESGHKNRDITRTVLAGSLAAE 374
           N  C      L   E+L  L L +I  +W+       +      N               
Sbjct: 191 N--CNSPETVL---EMLQKL-LYQIDPNWT-------SRSDHSSN--------------- 222

Query: 375 GAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLV--EVGCIPSLLK---- 428
             +KL  + I   L               R L KS  +    LV   V            
Sbjct: 223 --IKLRIHSIQAEL---------------RRLLKSKPYENCLLVLLNV-QNAKAWNAFNL 264

Query: 429 ----LLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLD-------F--IVDMVKKGL 475
               LL+++        +   L+ +      S+   S  L            +D   + L
Sbjct: 265 SCKILLTTRFKQ-----VTDFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 476 KVEARQHA--AATLF------YIASIEEYRKLIGEN-PEAIPALVDMVRDGTDRSKKNAL 526
             E         ++        +A+ + ++ +  +     I + ++++     R   + L
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 527 VAIFGLLMHSGNHWRFLAAGAVPL-LLNLL---TSSDSEELITDSLAVLATLAEK--LDG 580
            ++F     S +         +P  LL+L+          ++ + L    +L EK   + 
Sbjct: 379 -SVF---PPSAH---------IPTILLSLIWFDVIKSDVMVVVNKL-HKYSLVEKQPKES 424

Query: 581 TIAILHHGALDMIMKILD 598
           TI+I     L++ +K+ +
Sbjct: 425 TISI-PSIYLELKVKLEN 441

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 2e-06
 Identities = 39/259 (15%), Positives = 75/259 (28%), Gaps = 107/259 (41%)

Query: 20  PCE--SISPSTLLISLI--DLAHDICTYKSEFFSTNKRNALKAIRQV------------- 62
           P E  + +P    +S+I   +   + T+  + +     + L  I +              
Sbjct: 319 PREVLTTNP--RRLSIIAESIRDGLATW--DNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 63  -HNLLIFLEELRVESADIPG-------------------------SLV--------ISLS 88
              L +F       SA IP                          SLV        IS+ 
Sbjct: 375 FDRLSVF-----PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429

Query: 89  ELHLTF-----------QRI--RYLLEDCTREGARL---------WML---MKSDRVSNQ 123
            ++L             + I   Y +         +           +   +K+     +
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489

Query: 124 LRLF-------------IRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAIFETDPD 170
           + LF             IR   TA +          S +  L  L  +  +  I + DP 
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNA-------SGSILNTLQQL--KFYKPYICDNDPK 540

Query: 171 DKRVLNDVIRILGRFEDGI 189
            +R++N ++  L + E+ +
Sbjct: 541 YERLVNAILDFLPKIEENL 559

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 2e-05
 Identities = 48/354 (13%), Positives = 98/354 (27%), Gaps = 115/354 (32%)

Query: 5   LYGL---GRRVLT------------FP-AVH-----PCESISPSTLLISLIDLAHDI-CT 42
           + G+   G+  +                 +       C S  P T+L  L  L + I   
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS--PETVLEMLQKLLYQIDPN 212

Query: 43  YKS------------EFFSTNKRNALKAIRQVHNLLIFLEELR-VESADI-----PGS-- 82
           + S                   R  LK+    + LL+    L  V++A            
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV----LLNVQNAKAWNAFNLSCKI 268

Query: 83  LVI----SLSELHLTFQRIRYLLEDCTREGARLWMLMKSDRVSNQLRLFIRAIGTALDVL 138
           L+      +++           L+           L   +       L ++ +      L
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDH------HSMTLTPDE----VKSLLLKYLDCRPQDL 318

Query: 139 PLAAIDVS----SEVKELV-DLVMR-------------QARKAIFET-DPDDKRVLNDVI 179
           P   +  +    S + E + D +                  ++     +P + R      
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR------ 372

Query: 180 RILGRFED-GIRPDKSEVK-RVLDYLGITKWSQCNQEVKFLDSEITIEYLN----VDKRS 233
                F+   + P  + +   +L  +    W     +V   D  + +  L+    V+K+ 
Sbjct: 373 ---KMFDRLSVFPPSAHIPTILLSLI----W----FDVIKSDVMVVVNKLHKYSLVEKQP 421

Query: 234 ELALLSSLMGFLSYCKCIMFDL-VDNEASQQVSKKCCN--NMLGGLTPDDFTCP 284
           +     S+         I  +L V  E    + +   +  N+      DD   P
Sbjct: 422 K-ESTISIPS-------IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 59.8 bits (145), Expect = 4e-11
 Identities = 19/65 (29%), Positives = 28/65 (43%)

Query: 278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLK 337
              + CPI L  +++ V    GH + +A I+K  R     CP   E L   +L  +   K
Sbjct: 16  ESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAK 75

Query: 338 RIIQD 342
           R I  
Sbjct: 76  REILS 80

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 58.6 bits (142), Expect = 5e-11
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 277 TPDDFTCPISLEIMKDPVTLST-GHTYDRASILK-WFRAGNSTCPKTGERLQSK-ELLVN 333
            PD+  C I  +IM D V +   G++Y    I      +   TCP   +   S   L+ N
Sbjct: 10  IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIAN 69

Query: 334 LVLKRIIQ 341
             L++ + 
Sbjct: 70  KFLRQAVN 77

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 60.4 bits (146), Expect = 5e-11
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 279 DDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSK-ELLVNLVLK 337
             F C    E++  PVT    H   +  + + F+A   +CP     L     ++ N +L+
Sbjct: 77  QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQ 136

Query: 338 RIIQ 341
            ++ 
Sbjct: 137 TLLD 140

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 58.4 bits (141), Expect = 1e-10
 Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 1/91 (1%)

Query: 252 MFDLVDNEASQQVSKKCCNNMLGGLTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWF 311
           +++ V      + +      +      + F C    E++  P+T    H   +  + + F
Sbjct: 24  LWNEVLASLKDRPASGSPFQLFLSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSF 83

Query: 312 RAGNSTCPKTGERLQSK-ELLVNLVLKRIIQ 341
           RA   +CP     L     + VN  L+ ++ 
Sbjct: 84  RAQVFSCPACRYDLGRSYAMQVNQPLQTVLN 114

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 54.8 bits (132), Expect = 5e-10
 Identities = 7/54 (12%), Positives = 18/54 (33%)

Query: 278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELL 331
            D + C     ++  P     GH +  + +     + +  C    E +   ++ 
Sbjct: 13  EDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKVF 66

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 54.8 bits (132), Expect = 8e-10
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 277 TPDDFTCPISLEIMKDPVTLST-GHTYDRASILKWF-RAGNSTCPKTGERLQSKELLVN 333
            PD+  C I  +IM D V +   G++Y    I      +   TCP   +   S + L  
Sbjct: 12  IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSG 70

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 57.3 bits (138), Expect = 9e-10
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 279 DDFTCPISLEIMKDPVTLST-GHTYDRASILKWFRAGNSTCPKTGERLQSKELLV-NLVL 336
            +  CPI L+++K+ +T     H +    I+   R+GN  CP   ++L SK  L  +   
Sbjct: 53  SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNF 112

Query: 337 KRIIQ 341
             +I 
Sbjct: 113 DALIS 117

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 55.2 bits (133), Expect = 1e-09
 Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 279 DDFTCPISLEIMKDPVTLST-GHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLK 337
               C +      D  T+    H++ +  I+++    +  CP    ++     L+N+   
Sbjct: 14  PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLE-TSKYCPICDVQVHKTRPLLNIRSD 72

Query: 338 RIIQD 342
           + +QD
Sbjct: 73  KTLQD 77

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 279 DDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRA-----GNSTCPKTGERLQSKELLVN 333
           ++ TCPI LE++K+PV+    H++ RA I   + +     G   CP          L  N
Sbjct: 18  EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPN 77

Query: 334 LVLKRIIQ 341
           L +  I++
Sbjct: 78  LHVANIVE 85

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 279 DDFTCPISLEIMKDPVTLSTGHTYDRASILKWFR------AGNSTCPKTGERLQSKELLV 332
           ++ TCPI LE++ +P++L  GH+  RA I    +       G S+CP  G     + L  
Sbjct: 11  EEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQA 70

Query: 333 NLVLKRIIQ 341
           N  L  I++
Sbjct: 71  NQHLANIVE 79

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 55.9 bits (134), Expect = 3e-09
 Identities = 19/65 (29%), Positives = 28/65 (43%)

Query: 278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLK 337
              + CPI L  +++ V    GH + +A I+K  R     CP   E L   +L  +   K
Sbjct: 16  ESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAK 75

Query: 338 RIIQD 342
           R I  
Sbjct: 76  REILS 80

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 53.0 bits (128), Expect = 4e-09
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 279 DDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRA-----GNSTCPKTGERLQSKELLVN 333
           ++ TCPI LE++  P++L  GH++ +A +    +      G S+CP      Q + +  N
Sbjct: 18  EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPN 77

Query: 334 LVLKRIIQ 341
             +  I++
Sbjct: 78  RHVANIVE 85

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 53.2 bits (128), Expect = 6e-09
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 279 DDFTCPISLEIMKDPVTLSTGHTYDRASILKWF--RAGNSTCPKTGERLQSKELLVNLVL 336
               CPI LE++K+PV+    H + +  +LK    + G S CP     +  + L  +   
Sbjct: 20  KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRF 79

Query: 337 KRIIQ 341
            ++++
Sbjct: 80  SQLVE 84

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 54.0 bits (129), Expect = 8e-09
 Identities = 10/70 (14%), Positives = 19/70 (27%)

Query: 278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLK 337
              + C     +++ P     GH Y    +     +G   C         +E +  L   
Sbjct: 29  EAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESS 88

Query: 338 RIIQDWSVDN 347
               D +   
Sbjct: 89  SAFPDNAARR 98

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 51.8 bits (124), Expect = 1e-08
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 278 PDDFTCPISLEIMKDPVTLST-GHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVL 336
            + F C I +E ++D             + I +W     + CP     LQ +EL+     
Sbjct: 20  AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWA 79

Query: 337 KRIIQ 341
           + + Q
Sbjct: 80  EEVTQ 84

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 2/68 (2%)

Query: 278 PDDFTCPISLEIMKDPVTLST-GHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVL 336
            D   C I  E     + +    H Y    I K+     + CP     +   +L  N +L
Sbjct: 20  DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTEPDLKNNRIL 78

Query: 337 KRIIQDWS 344
             +++  +
Sbjct: 79  DELVKSLN 86

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 279 DDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELL-VNLVLK 337
              +C I   I+ DPV  S  H + R  IL+  +   S CP         +L        
Sbjct: 22  KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFL 81

Query: 338 RIIQD 342
            I+  
Sbjct: 82  NILNS 86

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 50.4 bits (120), Expect = 2e-07
 Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 279 DDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSK--ELLVNLVL 336
           ++  C I  E   + VTL+  H++    I +W +     CP   + ++SK   L+++  +
Sbjct: 63  NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSKTYSLVLDNCI 121

Query: 337 KRIIQD 342
            +++ +
Sbjct: 122 NKMVNN 127

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 279 DDFTCPISLEIMKDPVTLST-GHTYDRASILKWFRAGNSTCPKTGERLQSKELLVN 333
               C I    + D  T++   HT+ ++ I++ F   ++ CPK    +   + L  
Sbjct: 14  PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 279 DDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRA--GNSTCP 319
            + +C + LE +K+PV +  GH + +A I +W+     +  CP
Sbjct: 14  VEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCP 56

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 46.7 bits (111), Expect = 5e-07
 Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 1/41 (2%)

Query: 279 DDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCP 319
               C I L+    PV+L   H +    +      G   C 
Sbjct: 14  TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGK-RCA 53

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 45.8 bits (109), Expect = 7e-07
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 279 DDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRA--GNSTCP 319
           ++  CPI L+I++ PVT+  GH +    I +      G   CP
Sbjct: 19  EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCP 61

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 47.6 bits (113), Expect = 7e-07
 Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 4/67 (5%)

Query: 279 DDFTCPISLEIMKDPVTLST-GHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLK 337
               C     I+++PV L    H +    +        + CP        ++L +N  L 
Sbjct: 21  KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCI---GTGCPVCYTPAWIQDLKINRQLD 77

Query: 338 RIIQDWS 344
            +IQ  S
Sbjct: 78  SMIQLCS 84

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 46.2 bits (110), Expect = 8e-07
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 279 DDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRA--GNSTCP 319
           ++  CPI L+I++ PVT+  GH +    I +      G   CP
Sbjct: 19  EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCP 61

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 49.4 bits (117), Expect = 4e-06
 Identities = 38/277 (13%), Positives = 87/277 (31%), Gaps = 54/277 (19%)

Query: 412 FNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMV 471
           FN   ++    I  L + + +   + ++  +  + N+++       + + G +  I++ +
Sbjct: 448 FNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYL 507

Query: 472 KKG--LKVEARQHAAATLFYIASIEEYRKLIGENPE----------AIPALVDMVRDGTD 519
                +    R      L     +     LI  NP           AIP L +++   T 
Sbjct: 508 ANKQDIGEPIRILGCRAL---TRM-----LIFTNPGLIFKKYSALNAIPFLFELLPRSTP 559

Query: 520 RSKKN--------------ALVAIFGLLMHSGNHWR------FLAAGAVPLLLNLLTSSD 559
                              AL+A+  L     +                  + NL+   +
Sbjct: 560 VDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDEN 619

Query: 560 SE------ELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDS---CTSRAGKEYCV 610
                   ELI++ ++   T+A K             ++++K+L      + RA     V
Sbjct: 620 VPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRA-----V 674

Query: 611 SLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSS 647
           + + A        +   L+    L+ +   + +    
Sbjct: 675 AAIFANIATTIPLIAKELLTKKELIENAIQVFADQID 711

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 44.4 bits (105), Expect = 4e-06
 Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 280 DFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCP 319
            F C I  +  ++PV     H +  +  L+ FRA    C 
Sbjct: 15  PFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCY 53

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 34/176 (19%), Positives = 70/176 (39%), Gaps = 18/176 (10%)

Query: 423 IPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQH 482
           +  L++LL     +  +NAI+ ++ ++K  +     +    L  +  ++KK   +   Q 
Sbjct: 34  LKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM----LKKLFSLLKKSEAIPLTQE 89

Query: 483 AAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRF 542
            A     +A   E  +L+      IP L    R G +++K N   A+  +   +      
Sbjct: 90  IAKAFGQMAK--EKPELV---KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM---- 140

Query: 543 LAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILD 598
           L A  V   +++L+S +  E    +L  +  + E     +       L  I+ +L 
Sbjct: 141 LMASIVRDFMSMLSSKN-REDKLTALNFIEAMGENSFKYVN----PFLPRIINLLH 191

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 41.7 bits (97), Expect = 1e-04
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 8/62 (12%)

Query: 274 GGLTPDDFTCPISLEIMKD-------PVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQ 326
           G +     +CPI ++   +        V+   GH +    +    +   +TCP   +++ 
Sbjct: 1   GAMGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKIN 59

Query: 327 SK 328
            K
Sbjct: 60  HK 61

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 10/41 (24%), Positives = 13/41 (31%)

Query: 279 DDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCP 319
               C I  E  KD      GH    + +  W  +    CP
Sbjct: 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCP 371

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	685
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.97
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.96
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.96
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.95
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.95
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.95
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.95
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.95
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.94
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.94
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.94
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.94
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.93
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.93
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.93
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.92
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.92
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.92
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.91
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.91
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.9
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.9
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.9
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.9
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.9
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.89
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.89
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.89
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.88
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.88
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.87
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.87
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.87
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.86
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.82
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.8
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.76
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.76
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.75
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.75
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.74
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	99.74
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.72
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.68
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.64
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.56
3grl_A	651	General vesicular transport factor P115; vesicle t	99.47
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.45
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.41
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	99.39
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	99.38
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.37
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.34
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.32
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.31
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.31
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.31
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.3
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.29
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.28
3grl_A	651	General vesicular transport factor P115; vesicle t	99.28
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.28
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.27
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.27
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.26
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.26
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.24
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.22
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.19
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.19
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.18
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.17
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.16
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.16
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.14
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.14
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.13
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.13
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.13
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.09
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.07
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.06
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.05
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.04
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.03
2ect_A	78	Ring finger protein 126; metal binding protein, st	98.99
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.97
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.92
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	98.92
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.89
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.85
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.85
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.85
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.84
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.83
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.82
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.81
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.81
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.8
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.8
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.79
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.78
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.76
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.76
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.71
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.69
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.67
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.63
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.61
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.58
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.49
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.49
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.48
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.43
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.42
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.4
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.36
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.35
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.3
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.28
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.28
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.27
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.27
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.23
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.23
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.23
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.21
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.15
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.14
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.13
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.03
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	97.97
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.96
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.87
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.86
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.83
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.82
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.81
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.75
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	97.7
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.64
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.45
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.41
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	97.39
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.37
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.28
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	97.15
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.14
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.12
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.07
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.06
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.04
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	96.85
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	96.64
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.52
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.39
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.13
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.11
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	95.77
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	94.78
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	94.74
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.7
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	94.57
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.53
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	94.52
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	94.47
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	94.33
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	94.25
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	94.24
3nw0_A	238	Non-structural maintenance of chromosomes element	93.85
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	93.7
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	93.7
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	92.5
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	92.36
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	90.94
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	90.72
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	90.63
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	90.54
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	89.78
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	89.07
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	88.68
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	87.92
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	85.38
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	85.36
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	83.35
1weo_A	93	Cellulose synthase, catalytic subunit (IRX3); stru	83.28
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	82.59

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=5.4e-30  Score=273.99  Aligned_cols=270  Identities=17%  Similarity=0.164  Sum_probs=237.0

Q ss_pred             HHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC-----------CCHHHHHHHHHHhhccccCcc-hhHHHHh-
Q 039015          394 EEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS-----------KDSSTQENAIAALLNLSKHCK-SKSMVVE-  460 (685)
Q Consensus       394 ~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s-----------~~~~~~~~A~~aL~nLs~~~~-~k~~i~~-  460 (685)
                      +.+.+|++.|.+++. ++++|..+++.|+++.|+.+|.+           .++.+|.+|+++|.||+.+++ +|..|.. 
T Consensus        47 ~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~  125 (354)
T 3nmw_A           47 HQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM  125 (354)
T ss_dssp             GTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            445689999999997 68999999999999999999952           246799999999999998775 7887764 


Q ss_pred             cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc--hhHHHHhhcCCCcHHHHHHHh-ccCCHHHHHHHHHHHHHhcC-CC
Q 039015          461 SGGLDFIVDMVKKGLKVEARQHAAATLFYIASI--EEYRKLIGENPEAIPALVDMV-RDGTDRSKKNALVAIFGLLM-HS  536 (685)
Q Consensus       461 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~-~~  536 (685)
                      .|+|+.|+.+|+++ +.++++.|+++|.+|+..  +++|..|.+ .|+||.|+++| +++++..++.|+.+|+||+. .+
T Consensus       126 ~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~i~~-~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          126 KGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLRE-VGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTCCHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             CCcHHHHHHHHCCC-CHHHHHHHHHHHHHHhccCCHHHHHHHHH-CCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence            56799999999998 999999999999999985  579999998 99999999975 66788999999999999998 55


Q ss_pred             CcHHHHH-hcCChHHHHHHhccCCCh---hHHHHHHHHHHHHhc----ChhcHHHHHhcCChHHHHHHhhcCCChhHHHH
Q 039015          537 GNHWRFL-AAGAVPLLLNLLTSSDSE---ELITDSLAVLATLAE----KLDGTIAILHHGALDMIMKILDSCTSRAGKEY  608 (685)
Q Consensus       537 ~n~~~iv-~~G~v~~Lv~lL~~~~~~---~~~~~al~~L~~La~----~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~  608 (685)
                      +|+..++ ..|+++.|+++|....+.   .+++.|+++|.||+.    +++++..+.+.|+++.|+++|+++ +..++++
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~  282 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN  282 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred             hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence            7898888 799999999999543332   589999999999995    899999999999999999999998 9999999


Q ss_pred             HHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcccCC
Q 039015          609 CVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYERHSS  669 (685)
Q Consensus       609 a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~~~~~  669 (685)
                      |+++|++|+..+ ++.++.+.+ .|+++.|+.|+.++++++++.|.+.|..|....+..|.
T Consensus       283 A~~aL~nLa~~~-~~~~~~i~~-~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~~  341 (354)
T 3nmw_A          283 ACGTLWNLSARN-PKDQEALWD-MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK  341 (354)
T ss_dssp             HHHHHHHHTSSC-HHHHHHHHH-TTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHHHhCCC-HHHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHHh
Confidence            999999999765 444556666 89999999999999999999999999999987665554

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.97  E-value=8.3e-30  Score=283.23  Aligned_cols=283  Identities=18%  Similarity=0.228  Sum_probs=243.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccC-cchhHHH
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKH-CKSKSMV  458 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~-~~~k~~i  458 (685)
                      .++.|++.|++++++.|..|+..|++++.+++.++..+++.|+||.|+.+|.++++.++..|+++|.||+.+ +++|..|
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i   82 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            478999999999999999999999999987878898999999999999999999999999999999999987 7899999


Q ss_pred             HhcCcHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhc--------cC--------CHHH
Q 039015          459 VESGGLDFIVDMVK-KGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR--------DG--------TDRS  521 (685)
Q Consensus       459 ~~~g~i~~Lv~lL~-~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~--------~~--------~~~~  521 (685)
                      ++.|+|+.|+++|+ ++ +.++++.|+++|+||+.++++|..|.+  |++|.|+++|.        ++        ++..
T Consensus        83 ~~~G~i~~Lv~lL~~~~-~~~~~~~a~~aL~nLa~~~~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v  159 (457)
T 1xm9_A           83 RRQNGIREAVSLLRRTG-NAEIQKQLTGLLWNLSSTDELKEELIA--DALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHTTCHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTSSSTHHHHHH--HHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHcCCHHHHHHHHhhCC-CHHHHHHHHHHHHHHhcCHHhHHHHHh--ccHHHHHHHHhccccccccCccchhcccccHHH
Confidence            99999999999999 77 899999999999999999999998986  99999999993        22        3455


Q ss_pred             HHHHHHHHHHhcCCCCcHHHHHhc-CChHHHHHHhccC-----CChhHHHHHHHHHHHHhcCh-----------------
Q 039015          522 KKNALVAIFGLLMHSGNHWRFLAA-GAVPLLLNLLTSS-----DSEELITDSLAVLATLAEKL-----------------  578 (685)
Q Consensus       522 ~~~A~~aL~nLs~~~~n~~~iv~~-G~v~~Lv~lL~~~-----~~~~~~~~al~~L~~La~~~-----------------  578 (685)
                      .++|+++|+|||.+++++..+++. |+++.|+.+|.+.     .+..+.+.|+.+|.||+...                 
T Consensus       160 ~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~  239 (457)
T 1xm9_A          160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence            669999999999988899999998 9999999999631     35568899999999997321                 


Q ss_pred             ----------------------------------hcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHH-
Q 039015          579 ----------------------------------DGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGAN-  623 (685)
Q Consensus       579 ----------------------------------~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~-  623 (685)
                                                        .+...+.+.|+++.|+.+|..+.++.+++.|+++|.+||.++++. 
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~  319 (457)
T 1xm9_A          240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence                                              122334455668889998887657999999999999999875432 


Q ss_pred             --HHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc
Q 039015          624 --VVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYE  665 (685)
Q Consensus       624 --~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~  665 (685)
                        ..+.+....|++|.|+.|+.+++.++++.|.++|+.+....+
T Consensus       320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~  363 (457)
T 1xm9_A          320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL  363 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred             HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH
Confidence              213344347999999999999999999999999999987543

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.96  E-value=5.2e-29  Score=280.25  Aligned_cols=284  Identities=17%  Similarity=0.185  Sum_probs=241.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccC--cchhH
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKH--CKSKS  456 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~--~~~k~  456 (685)
                      ..|+.||+.|.+++++.|..|++.|++++..+.++|..+++.|+||.||.+|.+++..+|+.|+++|.||+.+  ++||.
T Consensus        48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~  127 (584)
T 3l6x_A           48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI  127 (584)
T ss_dssp             CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred             ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence            3589999999999999999999999999988899999999999999999999999999999999999999984  78999


Q ss_pred             HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhc------------------cCC
Q 039015          457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR------------------DGT  518 (685)
Q Consensus       457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~------------------~~~  518 (685)
                      .|++.|+|+.|+.+|+++.+.+++++|+++|++||.++++|..|..  |+||+|++++.                  ..+
T Consensus       128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~--~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d  205 (584)
T 3l6x_A          128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD--HALHALTDEVIIPHSGWEREPNEDCKPRHIEW  205 (584)
T ss_dssp             HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH--HTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred             HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh--ccHHHHHHHHhccccccccccccccccccccc
Confidence            9999999999999999743789999999999999999999999996  46999999872                  124


Q ss_pred             HHHHHHHHHHHHHhcCCCC-cHHHHHhc-CChHHHHHHhcc-----CCChhHHHHHHHHHHHHhcChh------------
Q 039015          519 DRSKKNALVAIFGLLMHSG-NHWRFLAA-GAVPLLLNLLTS-----SDSEELITDSLAVLATLAEKLD------------  579 (685)
Q Consensus       519 ~~~~~~A~~aL~nLs~~~~-n~~~iv~~-G~v~~Lv~lL~~-----~~~~~~~~~al~~L~~La~~~~------------  579 (685)
                      +.++++|+++|+||+.+.+ ++..+++. |+++.|+.+|.+     +.+...++.|+++|.||+...+            
T Consensus       206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~  285 (584)
T 3l6x_A          206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEA  285 (584)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC----
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence            6889999999999998775 58889885 557899999953     2456789999999999987521            


Q ss_pred             --------------cHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcH---HHHHHHHhcCCcHHHHHHHH
Q 039015          580 --------------GTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGA---NVVALLVKSPSLMGSLYSLL  642 (685)
Q Consensus       580 --------------~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~---~~~~~l~~~~g~i~~L~~Ll  642 (685)
                                    |...+.+.++++.|+.+|+.+.++.++++|+++|++||.+...   ..+..+.+ .|++|.|+.|+
T Consensus       286 ~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~-~~glp~Lv~LL  364 (584)
T 3l6x_A          286 APNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQ-EKALSAIADLL  364 (584)
T ss_dssp             ----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTS-HHHHHHHHHGG
T ss_pred             cccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHH-cCcHHHHHHHH
Confidence                          1112223334567888887655899999999999999987533   22333333 68899999999


Q ss_pred             hcCChHHHHHHHHHHHHHHHhhc
Q 039015          643 SQGSSRASKKASALIRILHEFYE  665 (685)
Q Consensus       643 ~~g~~~~k~~A~~lL~~l~~~~~  665 (685)
                      .++++.+++.|.++|+.|.....
T Consensus       365 ~s~~~~v~~~A~~aL~nLs~~~~  387 (584)
T 3l6x_A          365 TNEHERVVKAASGALRNLAVDAR  387 (584)
T ss_dssp             GCSCHHHHHHHHHHHHHHHTTCS
T ss_pred             cCCCHHHHHHHHHHHHHHhCChh
Confidence            99999999999999999988643

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.96  E-value=7.9e-29  Score=272.79  Aligned_cols=267  Identities=18%  Similarity=0.158  Sum_probs=233.9

Q ss_pred             HHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC-----------CCHHHHHHHHHHhhccccCcc-hhHHHH-hcC
Q 039015          396 KNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS-----------KDSSTQENAIAALLNLSKHCK-SKSMVV-ESG  462 (685)
Q Consensus       396 ~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s-----------~~~~~~~~A~~aL~nLs~~~~-~k~~i~-~~g  462 (685)
                      +.+|++.|.+++. ++++|..|.+.|++++|+.+|..           .++.++.+|+++|.||+.+++ +|..+. ..|
T Consensus       165 ~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G  243 (458)
T 3nmz_A          165 ICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG  243 (458)
T ss_dssp             THHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence            3489999999986 68999999999999999999952           346799999999999998875 677775 467


Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc--hhHHHHhhcCCCcHHHHHHHh-ccCCHHHHHHHHHHHHHhcC-CCCc
Q 039015          463 GLDFIVDMVKKGLKVEARQHAAATLFYIASI--EEYRKLIGENPEAIPALVDMV-RDGTDRSKKNALVAIFGLLM-HSGN  538 (685)
Q Consensus       463 ~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~-~~~n  538 (685)
                      +|+.|+.+|+++ +.+++..|+++|.+|+..  +++|..|.+ .|+||.||++| .++++..++.|+.+|+||+. +++|
T Consensus       244 aIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~I~~-~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~n  321 (458)
T 3nmz_A          244 CMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLRE-VGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN  321 (458)
T ss_dssp             HHHHHHHGGGCS-CHHHHHHHHHHHHHHTSSCCHHHHHHHHH-TTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred             cHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCHHHHHHHHH-cCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHH
Confidence            799999999998 999999999999999984  579999998 99999999975 56788999999999999998 6689


Q ss_pred             HHHHH-hcCChHHHHHHhccCCCh---hHHHHHHHHHHHHhc----ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHH
Q 039015          539 HWRFL-AAGAVPLLLNLLTSSDSE---ELITDSLAVLATLAE----KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCV  610 (685)
Q Consensus       539 ~~~iv-~~G~v~~Lv~lL~~~~~~---~~~~~al~~L~~La~----~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~  610 (685)
                      +..++ ..|+++.|+++|....+.   .+++.|+++|.||+.    +++++..+.+.|+++.|+.+|+++ +..++++|+
T Consensus       322 k~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~  400 (458)
T 3nmz_A          322 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNAC  400 (458)
T ss_dssp             HHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC-ChHHHHHHH
Confidence            99988 799999999999543332   489999999999984    889999999999999999999998 999999999


Q ss_pred             HHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcccC
Q 039015          611 SLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYERHS  668 (685)
Q Consensus       611 ~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~~~~  668 (685)
                      ++|++|+..++ +.++.+.+ .|+++.|+.|+.++++++++.|.+.|+.|....+..|
T Consensus       401 ~aL~nLa~~~~-~~~~~i~~-~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ky  456 (458)
T 3nmz_A          401 GTLWNLSARNP-KDQEALWD-MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY  456 (458)
T ss_dssp             HHHHHHHSSCH-HHHHHHHH-HTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSCC-
T ss_pred             HHHHHHHcCCH-HHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHhhh
Confidence            99999997654 44556665 7999999999999999999999999999988765555

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.95  E-value=1.5e-27  Score=262.65  Aligned_cols=283  Identities=15%  Similarity=0.155  Sum_probs=242.5

Q ss_pred             hHHHHHHHHHhcC------------CCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCH----------HHHHHhhcCCC-
Q 039015          378 KLLANFISDRLLE------------GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCI----------PSLLKLLSSKD-  434 (685)
Q Consensus       378 ~~~i~~Lv~~L~s------------~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i----------p~Lv~lL~s~~-  434 (685)
                      .+.++.|++.|+.            ++++.+.+|+++|.+++.++++......+.|++          +.+++++.+.. 
T Consensus        69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  148 (458)
T 3nmz_A           69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP  148 (458)
T ss_dssp             HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred             CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence            4678999999975            347999999999999999999999999999998          77777787642 


Q ss_pred             -HH-----HHH-------HHHHHhhccccCcchhHHHHhcCcHHHHHHHhcC----------CCCHHHHHHHHHHHHHhc
Q 039015          435 -SS-----TQE-------NAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKK----------GLKVEARQHAAATLFYIA  491 (685)
Q Consensus       435 -~~-----~~~-------~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~----------~~~~e~~~~Aa~~L~~Ls  491 (685)
                       .+     +++       .|+++|.|++.++++|..|++.|++++|+.+|..          ..+.+.+.+|+++|.||+
T Consensus       149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa  228 (458)
T 3nmz_A          149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT  228 (458)
T ss_dssp             SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence             22     444       9999999999999999999999999999999952          114678999999999999


Q ss_pred             Cchh-HHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC--CCcHHHHHhcCChHHHHHHhccCCChhHHHHHH
Q 039015          492 SIEE-YRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH--SGNHWRFLAAGAVPLLLNLLTSSDSEELITDSL  568 (685)
Q Consensus       492 ~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~--~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al  568 (685)
                      ..++ ++..+....|+||.|+.+|.+++++++.+|+++|.||+..  ++++..++++|+|+.|+++|..+.+..+++.|+
T Consensus       229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~  308 (458)
T 3nmz_A          229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL  308 (458)
T ss_dssp             TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHH
T ss_pred             CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHH
Confidence            8774 7777765357799999999999999999999999999985  458999999999999999875666788999999


Q ss_pred             HHHHHHhc-ChhcHHHHH-hcCChHHHHHHhhcCCCh----hHHHHHHHHHHHHhcc--CcHHHHHHHHhcCCcHHHHHH
Q 039015          569 AVLATLAE-KLDGTIAIL-HHGALDMIMKILDSCTSR----AGKEYCVSLLLALCIN--GGANVVALLVKSPSLMGSLYS  640 (685)
Q Consensus       569 ~~L~~La~-~~~~~~~i~-~~g~v~~Lv~lL~~~~s~----~~~e~a~~~L~~L~~~--~~~~~~~~l~~~~g~i~~L~~  640 (685)
                      .+|+||+. +++++..|. ..|+++.|+++|..+ ++    .+++.|+++|.+|+..  +.+..++.+.+ .|+++.|+.
T Consensus       309 ~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~G~i~~Lv~  386 (458)
T 3nmz_A          309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYR-SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQ  386 (458)
T ss_dssp             HHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCC-CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHH
T ss_pred             HHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCC-CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-cccHHHHHH
Confidence            99999999 778899988 778899999999876 44    4899999999999972  22555667776 899999999


Q ss_pred             HHhcCChHHHHHHHHHHHHHHH
Q 039015          641 LLSQGSSRASKKASALIRILHE  662 (685)
Q Consensus       641 Ll~~g~~~~k~~A~~lL~~l~~  662 (685)
                      ++.+++..+++.|.+.|..|..
T Consensus       387 LL~~~~~~v~~~A~~aL~nLa~  408 (458)
T 3nmz_A          387 HLKSHSLTIVSNACGTLWNLSA  408 (458)
T ss_dssp             HSSCSCHHHHHHHHHHHHHHHS
T ss_pred             HHcCCChHHHHHHHHHHHHHHc
Confidence            9999999999999999999974

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.95  E-value=4e-27  Score=261.62  Aligned_cols=284  Identities=17%  Similarity=0.134  Sum_probs=240.1

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhc-CCCHHHHHHHHHHhhccccCcchhH
Q 039015          378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLS-SKDSSTQENAIAALLNLSKHCKSKS  456 (685)
Q Consensus       378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~-s~~~~~~~~A~~aL~nLs~~~~~k~  456 (685)
                      .+.|+.|++.|++++++.+..|+++|++|+..++++|..++++|+||.|+.+|. +++.++++.|+++|.||+.++++|.
T Consensus        43 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~  122 (457)
T 1xm9_A           43 LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE  122 (457)
T ss_dssp             TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHH
Confidence            457999999999999999999999999999877899999999999999999999 8899999999999999999999999


Q ss_pred             HHHhcCcHHHHHHHhc--------CC-------CCHHHHHHHHHHHHHhcCchhHHHHhhcCC-CcHHHHHHHhccC---
Q 039015          457 MVVESGGLDFIVDMVK--------KG-------LKVEARQHAAATLFYIASIEEYRKLIGENP-EAIPALVDMVRDG---  517 (685)
Q Consensus       457 ~i~~~g~i~~Lv~lL~--------~~-------~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~-g~i~~Lv~lL~~~---  517 (685)
                      .|++ |+++.|+.+|.        .+       .+.++..+|+++|+||+.+++++..+.+ . |+++.|+.+|+++   
T Consensus       123 ~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~  200 (457)
T 1xm9_A          123 ELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN-YSGLIDSLMAYVQNCVAA  200 (457)
T ss_dssp             HHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTT-STTHHHHHHHHHHHHHHH
T ss_pred             HHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHH-cCCCHHHHHHHHHhhccc
Confidence            9999 99999999993        22       1345666999999999999999999988 6 9999999888641   


Q ss_pred             --------------------------------------------------------------------------------
Q 039015          518 --------------------------------------------------------------------------------  517 (685)
Q Consensus       518 --------------------------------------------------------------------------------  517 (685)
                                                                                                      
T Consensus       201 ~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  280 (457)
T 1xm9_A          201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY  280 (457)
T ss_dssp             TCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGG
T ss_pred             cCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHh
Confidence                                                                                            


Q ss_pred             ----------------CHHHHHHHHHHHHHhcCCCCc------HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHh
Q 039015          518 ----------------TDRSKKNALVAIFGLLMHSGN------HWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLA  575 (685)
Q Consensus       518 ----------------~~~~~~~A~~aL~nLs~~~~n------~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La  575 (685)
                                      ++..++.|+++|.||+.....      +..+.++|++|.|+++| .+++..++..|+++|.||+
T Consensus       281 ~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL-~~~~~~v~~~A~~aL~nls  359 (457)
T 1xm9_A          281 HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLL-QSGNSDVVRSGASLLSNMS  359 (457)
T ss_dssp             SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHT-TCSCHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHH-hCCCHhHHHHHHHHHHHHh
Confidence                            234556688999999976543      22334689999999999 6678899999999999999


Q ss_pred             cChhcHHHHHhcCChHHHHHHhhcCCC-----hhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcC-ChHH
Q 039015          576 EKLDGTIAILHHGALDMIMKILDSCTS-----RAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQG-SSRA  649 (685)
Q Consensus       576 ~~~~~~~~i~~~g~v~~Lv~lL~~~~s-----~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g-~~~~  649 (685)
                      .++.++..|.. |+++.|+++|..+..     +.+...++.+|.++...+++. ...+.+ .|+++.|+.|+.++ ++++
T Consensus       360 ~~~~~~~~i~~-~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~-~~~i~~-~g~l~~L~~L~~~~~~~~i  436 (457)
T 1xm9_A          360 RHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQL-AKQYFS-SSMLNNIINLCRSSASPKA  436 (457)
T ss_dssp             TSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHH-HHHHCC-HHHHHHHHHHHHCTTCHHH
T ss_pred             cCHHHHHHHHH-hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHH-HHHHHH-cCCHHHHHHHHcCCCcHHH
Confidence            99988877754 789999999987511     357778999999999876554 444444 79999999999999 9999


Q ss_pred             HHHHHHHHHHHHHhhccc
Q 039015          650 SKKASALIRILHEFYERH  667 (685)
Q Consensus       650 k~~A~~lL~~l~~~~~~~  667 (685)
                      +++|.++|..+..+.+-|
T Consensus       437 ~~~A~~~L~~~~~~~~l~  454 (457)
T 1xm9_A          437 AEAARLLLSDMWSSKELQ  454 (457)
T ss_dssp             HHHHHHHHHTTSSSTTCS
T ss_pred             HHHHHHHHHHHHcchhhh
Confidence            999999999877665543

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.95  E-value=1e-27  Score=256.35  Aligned_cols=244  Identities=18%  Similarity=0.166  Sum_probs=215.8

Q ss_pred             HHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhhcCCchhhHHHh-hCCHHHHHHhhcCCCHHHHHHHHHHhh
Q 039015          379 LLANFISDRLLE-----------GTSEEKNKVAYEVRLLTKSSIFNRSCLVE-VGCIPSLLKLLSSKDSSTQENAIAALL  446 (685)
Q Consensus       379 ~~i~~Lv~~L~s-----------~~~~~~~~a~~~L~~La~~~~~~r~~i~~-~G~ip~Lv~lL~s~~~~~~~~A~~aL~  446 (685)
                      +.++.|+..|.+           .+++.|..|+++|++|+.++..+|..+.. .|+||.|+.+|.+++.++++.|+++|.
T Consensus        73 G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~  152 (354)
T 3nmw_A           73 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLR  152 (354)
T ss_dssp             THHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            457777777742           24678999999999999877778888865 466999999999999999999999999


Q ss_pred             ccccC--cchhHHHHhcCcHHHHHHHh-cCCCCHHHHHHHHHHHHHhcC-chhHHHHhhcCCCcHHHHHHHhccCCH---
Q 039015          447 NLSKH--CKSKSMVVESGGLDFIVDMV-KKGLKVEARQHAAATLFYIAS-IEEYRKLIGENPEAIPALVDMVRDGTD---  519 (685)
Q Consensus       447 nLs~~--~~~k~~i~~~g~i~~Lv~lL-~~~~~~e~~~~Aa~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~---  519 (685)
                      ||+.+  +++|..|++.|+|+.|+++| +.+ +.++++.|+.+|++|+. .++++..|....|+||.|+.+|.++++   
T Consensus       153 nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~  231 (354)
T 3nmw_A          153 NLSWRADVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT  231 (354)
T ss_dssp             HHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSC
T ss_pred             HHhccCCHHHHHHHHHCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCccc
Confidence            99985  46899999999999999985 556 89999999999999998 678999998449999999999987764   


Q ss_pred             -HHHHHHHHHHHHhcC----CCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHh-cChhcHHHHHhcCChHHH
Q 039015          520 -RSKKNALVAIFGLLM----HSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLA-EKLDGTIAILHHGALDMI  593 (685)
Q Consensus       520 -~~~~~A~~aL~nLs~----~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La-~~~~~~~~i~~~g~v~~L  593 (685)
                       ..+++|+++|+||+.    .++++..++++|+++.|+++| .+++..+++.|+++|.||+ .+++++..+.+.|++|.|
T Consensus       232 ~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~L  310 (354)
T 3nmw_A          232 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSML  310 (354)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHH-cCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHH
Confidence             589999999999995    778999999999999999999 5677889999999999999 578999999999999999


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHHhccCcHHHH
Q 039015          594 MKILDSCTSRAGKEYCVSLLLALCINGGANVV  625 (685)
Q Consensus       594 v~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~  625 (685)
                      +++|+++ ++.+++.|+++|.+|+.+.+....
T Consensus       311 v~LL~s~-~~~i~~~A~~aL~nL~~~~~~~~~  341 (354)
T 3nmw_A          311 KNLIHSK-HKMIAMGSAAALRNLMANRPAKYK  341 (354)
T ss_dssp             HTTTTCS-SHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             HHHHhCC-CHHHHHHHHHHHHHHHcCCHHHHh
Confidence            9999998 999999999999999998766533

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.95  E-value=1.2e-26  Score=269.28  Aligned_cols=283  Identities=16%  Similarity=0.150  Sum_probs=245.5

Q ss_pred             hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCC-----------------------------chh---hHHHhhCCHH
Q 039015          377 MKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSI-----------------------------FNR---SCLVEVGCIP  424 (685)
Q Consensus       377 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~-----------------------------~~r---~~i~~~G~ip  424 (685)
                      ..+.++.|+..|++++...+..|++.|.+++.+.+                             .++   ..++++|++|
T Consensus       419 d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp  498 (810)
T 3now_A          419 DKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITT  498 (810)
T ss_dssp             CHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred             ccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHH
Confidence            35689999999999999999999999999997442                             123   6788999999


Q ss_pred             HHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhc--
Q 039015          425 SLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGE--  502 (685)
Q Consensus       425 ~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~--  502 (685)
                      .|+.+|+++++.+|+.|+++|.||+.++++|..+++.|++++|+.+|+++ +...+++|+++|.+|+...+....+..  
T Consensus       499 ~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~-~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~  577 (810)
T 3now_A          499 ALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEG-TEKGKRHATQALARIGITINPEVSFSGQR  577 (810)
T ss_dssp             HHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHTTTHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCChhhhhcchh
Confidence            99999999999999999999999999989999999999999999999999 899999999999999876544433321  


Q ss_pred             CCCcHHHHHHHhccC-CHHHHHHHHHHHHHhcCCC-CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhc
Q 039015          503 NPEAIPALVDMVRDG-TDRSKKNALVAIFGLLMHS-GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDG  580 (685)
Q Consensus       503 ~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~  580 (685)
                      ..|++|+|+.+|.++ +...+..|++||.||+..+ +++..++++|+++.|+.+| .++++.++..|+.+|.||+.+++.
T Consensus       578 ~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL-~s~~~~Vq~~A~~~L~NLa~~~~~  656 (810)
T 3now_A          578 SLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYL-MEDHLYLTRAAAQCLCNLVMSEDV  656 (810)
T ss_dssp             HHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHH-HSCCTTHHHHHHHHHHHHTTSHHH
T ss_pred             hhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhCChHH
Confidence            136899999999865 3455678999999999875 6899999999999999999 567789999999999999999999


Q ss_pred             HHHHHh-cCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 039015          581 TIAILH-HGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRI  659 (685)
Q Consensus       581 ~~~i~~-~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~  659 (685)
                      +..+.+ .|+++.|+.++++. +..++..|+++|.+|+.+++...... ....|+++.|+.|+.+++...+..|.+.+..
T Consensus       657 ~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~~s~~~~~~i-i~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~N  734 (810)
T 3now_A          657 IKMFEGNNDRVKFLALLCEDE-DEETATACAGALAIITSVSVKCCEKI-LAIASWLDILHTLIANPSPAVQHRGIVIILN  734 (810)
T ss_dssp             HHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHCHHHHHHH-HTSTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCHHHHHHH-HHHcCCHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            988885 56799999999987 99999999999999998654444444 4437999999999999999999999999988


Q ss_pred             HHHh
Q 039015          660 LHEF  663 (685)
Q Consensus       660 l~~~  663 (685)
                      +...
T Consensus       735 L~~~  738 (810)
T 3now_A          735 MINA  738 (810)
T ss_dssp             HHTT
T ss_pred             HHhC
Confidence            8654

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.95  E-value=3.2e-26  Score=257.62  Aligned_cols=283  Identities=17%  Similarity=0.138  Sum_probs=232.1

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhc-CCchhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccCcchh
Q 039015          378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKS-SIFNRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLSKHCKSK  455 (685)
Q Consensus       378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~-~~~~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~k  455 (685)
                      .+.|+.|++.|.+++.++|..|+++|++|+.+ +.++|..|+++|+||.|+.+|.+ .+.+++++|+.+|.|||.++++|
T Consensus        89 ~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k  168 (584)
T 3l6x_A           89 LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIK  168 (584)
T ss_dssp             TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGH
T ss_pred             cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhh
Confidence            35799999999999999999999999999985 58999999999999999999997 68899999999999999999999


Q ss_pred             HHHHhcCcHHHHHHHhc-----------------CCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhcc-
Q 039015          456 SMVVESGGLDFIVDMVK-----------------KGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRD-  516 (685)
Q Consensus       456 ~~i~~~g~i~~Lv~lL~-----------------~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~-  516 (685)
                      ..|++ |++++|+++|.                 ...+.+++.+|+++|+||+..+ ++|..|.+..|+|+.||.+|++ 
T Consensus       169 ~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~  247 (584)
T 3l6x_A          169 MEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAE  247 (584)
T ss_dssp             HHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHH
T ss_pred             HHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHh
Confidence            99995 57999999872                 1114789999999999999876 5588888756777788777653 


Q ss_pred             -----CC--------------------------------------------------------------------HHHHH
Q 039015          517 -----GT--------------------------------------------------------------------DRSKK  523 (685)
Q Consensus       517 -----~~--------------------------------------------------------------------~~~~~  523 (685)
                           .+                                                                    +.+++
T Consensus       248 ~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E  327 (584)
T 3l6x_A          248 IGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILE  327 (584)
T ss_dssp             HHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHH
T ss_pred             hcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHH
Confidence                 12                                                                    33444


Q ss_pred             HHHHHHHHhcCCCC-----cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhh
Q 039015          524 NALVAIFGLLMHSG-----NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILD  598 (685)
Q Consensus       524 ~A~~aL~nLs~~~~-----n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~  598 (685)
                      +|++||.||+....     ++..+.+.|++|.|++|| ..++..++..|+++|.||+.++.++..| ..|++|.||.+|.
T Consensus       328 ~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~  405 (584)
T 3l6x_A          328 ASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL-TNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLP  405 (584)
T ss_dssp             HHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhc
Confidence            55556666654321     223344578999999999 5677899999999999999999998877 6788999999998


Q ss_pred             cCC-------ChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcC--ChHHHHHHHHHHHHHHHhhc
Q 039015          599 SCT-------SRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQG--SSRASKKASALIRILHEFYE  665 (685)
Q Consensus       599 ~~~-------s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g--~~~~k~~A~~lL~~l~~~~~  665 (685)
                      ++.       +..+...|+++|.+|+..+++. .+.+.. .|+++.|+.|+.++  .+++++.|+++|..+..+.+
T Consensus       406 ~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~-~~~I~~-~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e  479 (584)
T 3l6x_A          406 GGQQNSSWNFSEDTVISILNTINEVIAENLEA-AKKLRE-TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE  479 (584)
T ss_dssp             SSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHH-HHHHHH-TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred             CCcccccccchHHHHHHHHHHHHHHhcCCHHH-HHHHHH-CCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence            752       3567889999999999877555 445555 89999999999987  88999999999999976543

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.94  E-value=2.8e-26  Score=266.26  Aligned_cols=283  Identities=17%  Similarity=0.187  Sum_probs=245.4

Q ss_pred             hhhhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhcCCchhhHHH-hhCCHHHHHHhhcCCCHHHHHHHHHHhhccccC
Q 039015          375 GAMKLLANFISDRLLEG--TSEEKNKVAYEVRLLTKSSIFNRSCLV-EVGCIPSLLKLLSSKDSSTQENAIAALLNLSKH  451 (685)
Q Consensus       375 ~~~~~~i~~Lv~~L~s~--~~~~~~~a~~~L~~La~~~~~~r~~i~-~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~  451 (685)
                      ++....++.|+++|.++  +.+++..|++.|.+|+. ++..|..++ +.|+||.|+.+|++++..++..|+++|.||+.+
T Consensus       373 g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~-~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~  451 (810)
T 3now_A          373 GAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTL-DAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNA  451 (810)
T ss_dssp             THHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTT-SHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTC
T ss_pred             ccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCC
Confidence            34556789999999887  88999999999999997 667777777 579999999999999999999999999999975


Q ss_pred             cc------------------------------hh---HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHH
Q 039015          452 CK------------------------------SK---SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRK  498 (685)
Q Consensus       452 ~~------------------------------~k---~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~  498 (685)
                      .+                              ++   ..++++|+++.|+.+|+++ ++++++.|+++|.||+.+++++.
T Consensus       452 ~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~-s~~vqe~Aa~aL~NLA~d~~~r~  530 (810)
T 3now_A          452 YEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTE-SHNSQELIARVLNAVCGLKELRG  530 (810)
T ss_dssp             SCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCC-CHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             chhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHH
Confidence            42                              12   5677999999999999999 99999999999999999999999


Q ss_pred             HhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHH---HhcCChHHHHHHhccCCChhHHHHHHHHHHHHh
Q 039015          499 LIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRF---LAAGAVPLLLNLLTSSDSEELITDSLAVLATLA  575 (685)
Q Consensus       499 ~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~i---v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La  575 (685)
                      .+.+ .|++|+|+.+|+++++.+++.|++||.||+.+.+....+   ...|++|+|+.+|.++.+......|+.+|.||+
T Consensus       531 ~Vv~-~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa  609 (810)
T 3now_A          531 KVVQ-EGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLA  609 (810)
T ss_dssp             HHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHH-CCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence            9999 999999999999999999999999999999765433322   124699999999953334445568999999999


Q ss_pred             cC-hhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHH
Q 039015          576 EK-LDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKAS  654 (685)
Q Consensus       576 ~~-~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~  654 (685)
                      .. ++.+..|++.|+++.|+.+|.++ ++.+++.|+.+|.+|+.+  +..+..+..+.|+++.|+.|+.+.+..+++.|.
T Consensus       610 ~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L~NLa~~--~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa  686 (810)
T 3now_A          610 SMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCLCNLVMS--EDVIKMFEGNNDRVKFLALLCEDEDEETATACA  686 (810)
T ss_dssp             TSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHHHHHTTS--HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCC--hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHH
Confidence            87 57788999999999999999987 999999999999999987  445555555579999999999999999999999


Q ss_pred             HHHHHHHHh
Q 039015          655 ALIRILHEF  663 (685)
Q Consensus       655 ~lL~~l~~~  663 (685)
                      +.|..+...
T Consensus       687 ~ALanLt~~  695 (810)
T 3now_A          687 GALAIITSV  695 (810)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhCC
Confidence            999999884

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.94  E-value=1.4e-25  Score=252.76  Aligned_cols=283  Identities=16%  Similarity=0.230  Sum_probs=243.9

Q ss_pred             hHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc-chh
Q 039015          378 KLLANFISDRLLE-GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-KSK  455 (685)
Q Consensus       378 ~~~i~~Lv~~L~s-~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~k  455 (685)
                      .+.|+.|++.|++ ++++.|..|+++|.+++.++++++..++++|+||.|+.+|.+++..+++.|+++|.||+.+. ..|
T Consensus        99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r  178 (510)
T 3ul1_B           99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR  178 (510)
T ss_dssp             TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            3579999999964 56899999999999999989999999999999999999999999999999999999999875 457


Q ss_pred             HHHHhcCcHHHHHHHhcCCC----------------------------------------------CHHHHHHHHHHHHH
Q 039015          456 SMVVESGGLDFIVDMVKKGL----------------------------------------------KVEARQHAAATLFY  489 (685)
Q Consensus       456 ~~i~~~g~i~~Lv~lL~~~~----------------------------------------------~~e~~~~Aa~~L~~  489 (685)
                      ..+.+.|++++|+.+|....                                              +.+++..|+++|.+
T Consensus       179 ~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~  258 (510)
T 3ul1_B          179 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY  258 (510)
T ss_dssp             HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            88878888888887764320                                              56778888888888


Q ss_pred             hcCchhHHH-HhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-CcHHHHHhcCChHHHHHHhccCCChhHHHHH
Q 039015          490 IASIEEYRK-LIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS-GNHWRFLAAGAVPLLLNLLTSSDSEELITDS  567 (685)
Q Consensus       490 Ls~~~~~~~-~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~a  567 (685)
                      |+..++.+. .+.. .|+++.|+.+|.+++..++..|+.+|.|++... .++..+++.|+++.|+.+| .+++..++..|
T Consensus       259 L~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL-~~~~~~v~~~A  336 (510)
T 3ul1_B          259 LTDGPNERIEMVVK-KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEA  336 (510)
T ss_dssp             HTSSCHHHHHHHHT-TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CT-TCSSHHHHHHH
T ss_pred             HhhchhhhHHHHHh-cccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHh-cCCCHHHHHHH
Confidence            887765444 4455 899999999999999999999999999998765 4778889999999999999 67788999999


Q ss_pred             HHHHHHHhc-ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCC
Q 039015          568 LAVLATLAE-KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGS  646 (685)
Q Consensus       568 l~~L~~La~-~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~  646 (685)
                      +++|.||+. ++..+..+.+.|++|.|+.+++++ +..++..|+++|.+++.++..+....+.+ .|+++.|+.++.+.+
T Consensus       337 ~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~-~g~i~~L~~LL~~~d  414 (510)
T 3ul1_B          337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVH-CGIIEPLMNLLSAKD  414 (510)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHH-TTCHHHHHHGGGCSC
T ss_pred             HHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHH-CCCHHHHHHHhcCCC
Confidence            999999976 466777889999999999999998 99999999999999998776666666776 899999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhh
Q 039015          647 SRASKKASALIRILHEFY  664 (685)
Q Consensus       647 ~~~k~~A~~lL~~l~~~~  664 (685)
                      +++...+...|..+-...
T Consensus       415 ~~i~~~~L~aL~nil~~~  432 (510)
T 3ul1_B          415 TKIIQVILDAISNIFQAA  432 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999988888777765543

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.94  E-value=3.9e-25  Score=250.21  Aligned_cols=283  Identities=16%  Similarity=0.223  Sum_probs=243.1

Q ss_pred             hHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc-chh
Q 039015          378 KLLANFISDRLL-EGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-KSK  455 (685)
Q Consensus       378 ~~~i~~Lv~~L~-s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~k  455 (685)
                      .+.|+.|++.|. +.+++.|..|+++|.+++.++.+++..+++.|+||.|+.+|.+++..+++.|+++|.||+.+. ++|
T Consensus       118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r  197 (529)
T 3tpo_A          118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFR  197 (529)
T ss_dssp             TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHH
Confidence            357999999996 456899999999999999988889999999999999999999999999999999999999875 568


Q ss_pred             HHHHhcCcHHHHHHHhcCCC----------------------------------------------CHHHHHHHHHHHHH
Q 039015          456 SMVVESGGLDFIVDMVKKGL----------------------------------------------KVEARQHAAATLFY  489 (685)
Q Consensus       456 ~~i~~~g~i~~Lv~lL~~~~----------------------------------------------~~e~~~~Aa~~L~~  489 (685)
                      ..+++.|++++|+.+|..+.                                              +.+++..|+++|.+
T Consensus       198 ~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~  277 (529)
T 3tpo_A          198 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY  277 (529)
T ss_dssp             HHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            88888888887777664220                                              55677778888888


Q ss_pred             hcCchhH-HHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-CcHHHHHhcCChHHHHHHhccCCChhHHHHH
Q 039015          490 IASIEEY-RKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS-GNHWRFLAAGAVPLLLNLLTSSDSEELITDS  567 (685)
Q Consensus       490 Ls~~~~~-~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~a  567 (685)
                      |+..++. ...+.. .|+++.|+.+|.++++.++..|+.+|.||+... .++..+++.|+++.|+.+| .++++.++..|
T Consensus       278 l~~~~~~~~~~v~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL-~~~~~~i~~~a  355 (529)
T 3tpo_A          278 LTDGPNERIEMVVK-KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEA  355 (529)
T ss_dssp             HHSSCHHHHHHHHT-TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT-TCSSHHHHHHH
T ss_pred             hhhhhhhhHHHHHh-ccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHH-cCCCHHHHHHH
Confidence            8876644 444555 899999999999999999999999999998755 4778889999999999999 67788999999


Q ss_pred             HHHHHHHhc-ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCC
Q 039015          568 LAVLATLAE-KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGS  646 (685)
Q Consensus       568 l~~L~~La~-~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~  646 (685)
                      +++|.||+. ++..+..+.+.|++|.|+.++.++ +..++..|+++|.+++.++..+....+.+ .|++++|+.|+.+.+
T Consensus       356 ~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~-~g~i~~L~~LL~~~d  433 (529)
T 3tpo_A          356 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVH-CGIIEPLMNLLSAKD  433 (529)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHH-TTCHHHHHHGGGCSC
T ss_pred             HHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHH-CcCHHHHHHHhcCCC
Confidence            999999987 466677788999999999999998 99999999999999998766665666766 899999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhh
Q 039015          647 SRASKKASALIRILHEFY  664 (685)
Q Consensus       647 ~~~k~~A~~lL~~l~~~~  664 (685)
                      +++...+...|..+-...
T Consensus       434 ~~i~~~~L~aL~nil~~~  451 (529)
T 3tpo_A          434 TKIIQVILDAISNIFQAA  451 (529)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999988888877776543

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.94  E-value=5.8e-25  Score=247.62  Aligned_cols=278  Identities=18%  Similarity=0.209  Sum_probs=232.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhh-cCCchhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccCc-chhH
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTK-SSIFNRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLSKHC-KSKS  456 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~-~~~~~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~-~~k~  456 (685)
                      .++.+|+.+.|++++.|..|+..+|.+.. +...-...++++|+||.||.+|++ +++.+|..|+++|.||+.+. +++.
T Consensus        58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~  137 (510)
T 3ul1_B           58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK  137 (510)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            48999999999999999999999998653 222335789999999999999975 56899999999999998655 6688


Q ss_pred             HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcH----------------------------
Q 039015          457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAI----------------------------  507 (685)
Q Consensus       457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i----------------------------  507 (685)
                      .+++.|+|+.|+.+|+++ +.++++.|+++|.+|+.+. +++..+.. .|++                            
T Consensus       138 ~vv~~GaIp~Lv~lL~s~-~~~v~e~A~~aL~nLa~d~~~~r~~v~~-~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~  215 (510)
T 3ul1_B          138 AVVDGGAIPAFISLLASP-HAHISEQAVWALGNIAGDGSAFRDLVIK-HGAIDPLLALLAVPDLSTLACGYLRNLTWTLS  215 (510)
T ss_dssp             HHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHHHHhccchhhhHHHHHHHHHHHH
Confidence            999999999999999999 9999999999999999864 66666654 4444                            


Q ss_pred             -------------------HHHHHHhccCCHHHHHHHHHHHHHhcCCCCcH-HHHHhcCChHHHHHHhccCCChhHHHHH
Q 039015          508 -------------------PALVDMVRDGTDRSKKNALVAIFGLLMHSGNH-WRFLAAGAVPLLLNLLTSSDSEELITDS  567 (685)
Q Consensus       508 -------------------~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~-~~iv~~G~v~~Lv~lL~~~~~~~~~~~a  567 (685)
                                         |.|+.+|.+++++++..|+++|.+|+.+..++ ..+++.|+++.|+.+| .+.+..++..+
T Consensus       216 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~a  294 (510)
T 3ul1_B          216 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPA  294 (510)
T ss_dssp             HHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHHHH
T ss_pred             HHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhh-cCCChhhhhHH
Confidence                               44555555556667778888888888766544 5567899999999999 66788999999


Q ss_pred             HHHHHHHhcC-hhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCC
Q 039015          568 LAVLATLAEK-LDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGS  646 (685)
Q Consensus       568 l~~L~~La~~-~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~  646 (685)
                      +.+|.||+.. +..+..+.+.|+++.|+.+|+++ ++.+++.|+++|.+|+.++... ...+.. .|+++.|+.++.+++
T Consensus       295 l~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~-~~~v~~-~g~i~~Lv~lL~~~~  371 (510)
T 3ul1_B          295 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQ-IQQVVN-HGLVPFLVGVLSKAD  371 (510)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHH-HHHHHH-TTHHHHHHHHHHSSC
T ss_pred             HHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHH-HHHHHh-cCCHHHHHHHHcCCC
Confidence            9999999764 66777889999999999999987 9999999999999999886544 445555 799999999999999


Q ss_pred             hHHHHHHHHHHHHHHHh
Q 039015          647 SRASKKASALIRILHEF  663 (685)
Q Consensus       647 ~~~k~~A~~lL~~l~~~  663 (685)
                      ..+++.|.+.|..+...
T Consensus       372 ~~v~~~Aa~aL~Nl~~~  388 (510)
T 3ul1_B          372 FKTQKEAAWAITNYTSG  388 (510)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcc
Confidence            99999999999887653

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.93  E-value=8.6e-25  Score=221.26  Aligned_cols=238  Identities=23%  Similarity=0.310  Sum_probs=220.8

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccC-cchhHHH
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKH-CKSKSMV  458 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~-~~~k~~i  458 (685)
                      .++.|++.|.+++++.+..|++.|.+++..+++++..+.+.|++|.|+.+|.+++..++..|+++|.+|+.+ ++++..+
T Consensus         3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   82 (252)
T 4hxt_A            3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI   82 (252)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            478999999999999999999999999987777999999999999999999999999999999999999988 6779999


Q ss_pred             HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhc-CchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 039015          459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIA-SIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG  537 (685)
Q Consensus       459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls-~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~  537 (685)
                      .+.|+++.|+.+|+++ +.+++..|+++|.+|+ ..++++..+.. .|+++.|++++.++++..+..|+++|.||+...+
T Consensus        83 ~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~  160 (252)
T 4hxt_A           83 VDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPD  160 (252)
T ss_dssp             HHTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence            9999999999999998 9999999999999999 56788999988 9999999999999999999999999999998654


Q ss_pred             -cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHH
Q 039015          538 -NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE-KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLA  615 (685)
Q Consensus       538 -n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~  615 (685)
                       ++..+++.|+++.|+.+| .++++.++..|+.+|.+|+. ++..+..+.+.|+++.|+++++++ ++.+++.|+++|.+
T Consensus       161 ~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~  238 (252)
T 4hxt_A          161 EAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN  238 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence             568889999999999999 56788999999999999998 577778889999999999999988 99999999999999


Q ss_pred             HhccCc
Q 039015          616 LCINGG  621 (685)
Q Consensus       616 L~~~~~  621 (685)
                      |+...+
T Consensus       239 l~~~~~  244 (252)
T 4hxt_A          239 IKSGGW  244 (252)
T ss_dssp             HHHTCB
T ss_pred             HHcCCC
Confidence            998754

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.93  E-value=4.3e-25  Score=224.44  Aligned_cols=235  Identities=21%  Similarity=0.279  Sum_probs=214.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhcccc-CcchhHHHH
Q 039015          381 ANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSK-HCKSKSMVV  459 (685)
Q Consensus       381 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~-~~~~k~~i~  459 (685)
                      .+.++..|.+++++.+..|++.|+++...+..++..+.+.|+||.|+.+|.++++.++..|+++|.||+. +++++..++
T Consensus        14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~   93 (252)
T 4db8_A           14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI   93 (252)
T ss_dssp             HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            6888999999999999999999976555577889999999999999999999999999999999999998 467799999


Q ss_pred             hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHH-HHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-C
Q 039015          460 ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYR-KLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS-G  537 (685)
Q Consensus       460 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~  537 (685)
                      +.|+++.|+.+|+++ +.+++..|+++|.+|+..++.+ ..+.. .|+++.|+.+|.++++.++..|+++|.||+... +
T Consensus        94 ~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  171 (252)
T 4db8_A           94 DAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNE  171 (252)
T ss_dssp             HTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence            999999999999998 9999999999999999999888 77777 999999999999999999999999999999755 5


Q ss_pred             cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHH
Q 039015          538 NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE-KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLAL  616 (685)
Q Consensus       538 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L  616 (685)
                      ++..+++.|+++.|+++| .++++.++..|+.+|.+|+. ++..+..+.+.|+++.|+.+++++ ++.+++.|+.+|.+|
T Consensus       172 ~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~l  249 (252)
T 4db8_A          172 QIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKL  249 (252)
T ss_dssp             HHHHHHHTTCHHHHHHGG-GCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHTT
T ss_pred             HHHHHHHCCCHHHHHHHH-CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHHH
Confidence            777888999999999999 56689999999999999985 577888899999999999999988 999999999999999


Q ss_pred             hcc
Q 039015          617 CIN  619 (685)
Q Consensus       617 ~~~  619 (685)
                      +.+
T Consensus       250 ~~~  252 (252)
T 4db8_A          250 QSH  252 (252)
T ss_dssp             C--
T ss_pred             hcC
Confidence            853

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.93  E-value=4.2e-24  Score=241.72  Aligned_cols=278  Identities=18%  Similarity=0.210  Sum_probs=233.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHh-hcCCchhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccCc-chhH
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLT-KSSIFNRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLSKHC-KSKS  456 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La-~~~~~~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~-~~k~  456 (685)
                      .++.+++.+.|++++.+..|+..++.+. .+.......+++.|+||.|+.+|.. +++.+|..|+++|.|++.+. +++.
T Consensus        77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~  156 (529)
T 3tpo_A           77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK  156 (529)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            4788999999999999999999998864 3333446789999999999999975 56899999999999999876 4578


Q ss_pred             HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc-hhHHHHhhcCCCc-----------------------------
Q 039015          457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASI-EEYRKLIGENPEA-----------------------------  506 (685)
Q Consensus       457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~~g~-----------------------------  506 (685)
                      .+++.|+|+.|+.+|.++ +.++++.|+++|.+|+.+ ++++..+.. .|+                             
T Consensus       157 ~vv~~Gaip~Lv~LL~s~-~~~v~e~A~~aL~nLa~~~~~~r~~i~~-~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~  234 (529)
T 3tpo_A          157 AVVDGGAIPAFISLLASP-HAHISEQAVWALGNIAGAGSAFRDLVIK-HGAIDPLLALLAVPDLSTLACGYLRNLTWTLS  234 (529)
T ss_dssp             HHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhccCHHHHHHHHH-cCCcHHHHHHHhccchhHhHHHHHHHHHHHHH
Confidence            888999999999999999 999999999999999975 466666654 444                             


Q ss_pred             ------------------HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc-HHHHHhcCChHHHHHHhccCCChhHHHHH
Q 039015          507 ------------------IPALVDMVRDGTDRSKKNALVAIFGLLMHSGN-HWRFLAAGAVPLLLNLLTSSDSEELITDS  567 (685)
Q Consensus       507 ------------------i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n-~~~iv~~G~v~~Lv~lL~~~~~~~~~~~a  567 (685)
                                        +|.|+.+|.+++++++.+|+++|.+|+.+..+ ...++++|+++.|+.+| .+++..++..|
T Consensus       235 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL-~~~~~~v~~~a  313 (529)
T 3tpo_A          235 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPA  313 (529)
T ss_dssp             HHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHHHH
T ss_pred             HHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHh-cCCChhHHHHH
Confidence                              45555555556666777888888888876654 45567899999999999 67788999999


Q ss_pred             HHHHHHHhcC-hhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCC
Q 039015          568 LAVLATLAEK-LDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGS  646 (685)
Q Consensus       568 l~~L~~La~~-~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~  646 (685)
                      +.+|.||+.+ +..+..+.+.|+++.|+.+|+++ ++.++..|+++|.+|+.++... ...+.. .|+++.|+.++.+++
T Consensus       314 ~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~-~~~v~~-~g~i~~Lv~lL~~~~  390 (529)
T 3tpo_A          314 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQ-IQQVVN-HGLVPFLVGVLSKAD  390 (529)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHH-HHHHHH-TTHHHHHHHHHHSSC
T ss_pred             HHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHH-HHHHHh-cCcHHHHHHHhcCCC
Confidence            9999999764 66778889999999999999988 9999999999999999886444 444555 899999999999999


Q ss_pred             hHHHHHHHHHHHHHHHh
Q 039015          647 SRASKKASALIRILHEF  663 (685)
Q Consensus       647 ~~~k~~A~~lL~~l~~~  663 (685)
                      ..+++.|.+.|..+...
T Consensus       391 ~~v~~~A~~aL~nl~~~  407 (529)
T 3tpo_A          391 FKTQKAAAWAITNYTSG  407 (529)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcC
Confidence            99999999988887653

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.92  E-value=1.1e-23  Score=237.92  Aligned_cols=281  Identities=18%  Similarity=0.232  Sum_probs=247.6

Q ss_pred             HHHHHHHHHhcCCC-HHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc-chhH
Q 039015          379 LLANFISDRLLEGT-SEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-KSKS  456 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~-~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~k~  456 (685)
                      +.++.|++.|.+++ ++.+..|+++|.+++..+++++..+++.|++|.|+.+|.+++..+++.|+++|.||+.+. .++.
T Consensus       117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~  196 (528)
T 4b8j_A          117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRD  196 (528)
T ss_dssp             TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHH
Confidence            46899999998876 999999999999999977899999999999999999999999999999999999999775 5688


Q ss_pred             HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 039015          457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS  536 (685)
Q Consensus       457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~  536 (685)
                      .+.+.|+++.|+.+|....+..++..|+++|.+|+........... .|+++.|+.+|.++++.++..|+++|.+|+...
T Consensus       197 ~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~  275 (528)
T 4b8j_A          197 LVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT-RPALPALARLIHSNDEEVLTDACWALSYLSDGT  275 (528)
T ss_dssp             HHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC
T ss_pred             HHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence            8999999999999995444899999999999999987544444445 899999999999999999999999999999876


Q ss_pred             CcH-HHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHH
Q 039015          537 GNH-WRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE-KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLL  614 (685)
Q Consensus       537 ~n~-~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~  614 (685)
                      +++ ..+++.|+++.|+.+| .+++..++..|+.+|.+|+. ++.....+.+.|+++.|+.+|.++.++.++..|+++|.
T Consensus       276 ~~~~~~~~~~g~v~~Lv~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~  354 (528)
T 4b8j_A          276 NDKIQAVIEAGVCPRLVELL-LHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTIS  354 (528)
T ss_dssp             HHHHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCHHHHHHHHH-cCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            654 5778999999999999 56678999999999999988 46677778888899999999987547899999999999


Q ss_pred             HHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015          615 ALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF  663 (685)
Q Consensus       615 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~  663 (685)
                      +|+..+++ ....+.. .|+++.|+.++.+++..++..|.+.|..+...
T Consensus       355 nl~~~~~~-~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~  401 (528)
T 4b8j_A          355 NITAGNKD-QIQAVIN-AGIIGPLVNLLQTAEFDIKKEAAWAISNATSG  401 (528)
T ss_dssp             HHHTSCHH-HHHHHHH-TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHH-HHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence            99986544 3445555 79999999999999999999999999988765

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.92  E-value=3.1e-23  Score=234.20  Aligned_cols=278  Identities=17%  Similarity=0.184  Sum_probs=247.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCC-chhhHHHhhCCHHHHHHhhcCCC-HHHHHHHHHHhhccccC-cchh
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSI-FNRSCLVEVGCIPSLLKLLSSKD-SSTQENAIAALLNLSKH-CKSK  455 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~-~~r~~i~~~G~ip~Lv~lL~s~~-~~~~~~A~~aL~nLs~~-~~~k  455 (685)
                      ..++.|+..|.+++++.+..|+..|+.++.... .+...+++.|++|.|+.+|.+++ +.++..|+++|.+++.+ ++++
T Consensus        74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  153 (528)
T 4b8j_A           74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT  153 (528)
T ss_dssp             -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence            458999999999999999999999999976554 67888999999999999999876 99999999999999987 5678


Q ss_pred             HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc-hhHHHHhhcCCCcHHHHHHHh-ccCCHHHHHHHHHHHHHhc
Q 039015          456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASI-EEYRKLIGENPEAIPALVDMV-RDGTDRSKKNALVAIFGLL  533 (685)
Q Consensus       456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs  533 (685)
                      ..+++.|+++.|+.+|.++ +.+++..|+++|.+|+.. ++++..+.. .|+++.|+.+| .+.++..+..|+++|.||+
T Consensus       154 ~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~i~~-~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~  231 (528)
T 4b8j_A          154 KVVIDHGAVPIFVKLLGSS-SDDVREQAVWALGNVAGDSPKCRDLVLA-NGALLPLLAQLNEHTKLSMLRNATWTLSNFC  231 (528)
T ss_dssp             HHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHTCHHHHHHHHH-TTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHH-CCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            8999999999999999998 999999999999999976 467888888 89999999999 5677899999999999999


Q ss_pred             CCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcH-HHHHhcCChHHHHHHhhcCCChhHHHHHHHH
Q 039015          534 MHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGT-IAILHHGALDMIMKILDSCTSRAGKEYCVSL  612 (685)
Q Consensus       534 ~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~-~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~  612 (685)
                      .+..+.......|+++.|+.+| .+.+..++..|+.+|.+|+.....+ ..+.+.|+++.|+.+|.++ ++.++..|+.+
T Consensus       232 ~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~~~  309 (528)
T 4b8j_A          232 RGKPQPSFEQTRPALPALARLI-HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP-SPSVLIPALRT  309 (528)
T ss_dssp             CSSSCCCHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred             cCCCCCcHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHHHH
Confidence            8876666677799999999999 6678899999999999999876554 5678889999999999988 89999999999


Q ss_pred             HHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcC-ChHHHHHHHHHHHHHHH
Q 039015          613 LLALCINGGANVVALLVKSPSLMGSLYSLLSQG-SSRASKKASALIRILHE  662 (685)
Q Consensus       613 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g-~~~~k~~A~~lL~~l~~  662 (685)
                      |.+|+.+++. ..+.+.. .|+++.|+.++.++ ++.++..|.++|..|..
T Consensus       310 L~nl~~~~~~-~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~  358 (528)
T 4b8j_A          310 VGNIVTGDDA-QTQCIID-HQALPCLLSLLTQNLKKSIKKEACWTISNITA  358 (528)
T ss_dssp             HHHHTTSCHH-HHHHHHT-TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHH-HHHHHHH-hhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence            9999987644 4455555 89999999999999 89999999999998875

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.92  E-value=1.5e-23  Score=212.00  Aligned_cols=241  Identities=23%  Similarity=0.292  Sum_probs=219.3

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHhhccccCcc-hhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc-hhHHH
Q 039015          421 GCIPSLLKLLSSKDSSTQENAIAALLNLSKHCK-SKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASI-EEYRK  498 (685)
Q Consensus       421 G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~-~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~-~~~~~  498 (685)
                      |+||.|+.+|.+++++++..|+++|.+++.++. ++..+++.|+++.|+.+|+++ +.+++..|+++|.+|+.. ++++.
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHHH
Confidence            679999999999999999999999999998775 799999999999999999999 899999999999999988 78999


Q ss_pred             HhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhc-CCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC
Q 039015          499 LIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLL-MHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK  577 (685)
Q Consensus       499 ~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs-~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~  577 (685)
                      .+.. .|+++.|+.+|+++++..+..|+++|.||+ .+++++..+++.|+++.|+++| .++++.++..|+.+|.+|+..
T Consensus        81 ~~~~-~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~~  158 (252)
T 4hxt_A           81 AIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASG  158 (252)
T ss_dssp             HHHH-TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcC
Confidence            9988 999999999999999999999999999999 5667899999999999999999 567789999999999999985


Q ss_pred             -hhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHH
Q 039015          578 -LDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASAL  656 (685)
Q Consensus       578 -~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~l  656 (685)
                       +..+..+.+.|+++.|+.++.++ ++.++..|+.+|.+++..+ +.....+.. .|+++.|+.++.++++.+++.|.++
T Consensus       159 ~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~-~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~~  235 (252)
T 4hxt_A          159 PDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGP-TSAIKAIVD-AGGVEVLQKLLTSTDSEVQKEAQRA  235 (252)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSB-HHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCC-HHHHHHHHH-CCCHHHHHHHHCCCcHHHHHHHHHH
Confidence             55567888989999999999987 9999999999999999865 445556666 8999999999999999999999999


Q ss_pred             HHHHHHhhccc
Q 039015          657 IRILHEFYERH  667 (685)
Q Consensus       657 L~~l~~~~~~~  667 (685)
                      |..|.......
T Consensus       236 L~~l~~~~~~~  246 (252)
T 4hxt_A          236 LENIKSGGWLE  246 (252)
T ss_dssp             HHHHHHTCBCC
T ss_pred             HHHHHcCCCcc
Confidence            99998876543

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.91  E-value=4.3e-22  Score=225.10  Aligned_cols=278  Identities=15%  Similarity=0.197  Sum_probs=246.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcC-CchhhHHHhhCCHHHHHHhhcCC-CHHHHHHHHHHhhccccCc-chh
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSS-IFNRSCLVEVGCIPSLLKLLSSK-DSSTQENAIAALLNLSKHC-KSK  455 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~-~~~r~~i~~~G~ip~Lv~lL~s~-~~~~~~~A~~aL~nLs~~~-~~k  455 (685)
                      ..++.|+..|.+++++.+..|+..|+.+.... ..++..+++.|++|.|+.+|.++ ++.++..|+++|.+++.+. +.+
T Consensus        87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~  166 (530)
T 1wa5_B           87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT  166 (530)
T ss_dssp             CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence            34899999999999999999999999986532 45667889999999999999997 8999999999999999875 568


Q ss_pred             HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc-hhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015          456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASI-EEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM  534 (685)
Q Consensus       456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  534 (685)
                      ..+++.|+++.|+.+|+++ +.+++..|+++|.+|+.. ++++..+.. .|+++.|+.++.++++.++..|+++|.+|+.
T Consensus       167 ~~~~~~g~i~~Lv~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~  244 (530)
T 1wa5_B          167 KVVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDSTDYRDYVLQ-CNAMEPILGLFNSNKPSLIRTATWTLSNLCR  244 (530)
T ss_dssp             HHHHHTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCccchHHHHH-cCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence            8888999999999999988 999999999999999986 478888888 8999999999999889999999999999998


Q ss_pred             CC-CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-hhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHH
Q 039015          535 HS-GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK-LDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSL  612 (685)
Q Consensus       535 ~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~-~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~  612 (685)
                      +. ++.......|+++.|+.+| .+.+..++..|+.+|.+|+.. ++....+.+.|+++.|+.+|.++ ++.++..|+.+
T Consensus       245 ~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-~~~v~~~a~~~  322 (530)
T 1wa5_B          245 GKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE-STLVQTPALRA  322 (530)
T ss_dssp             CSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC-ChhhHHHHHHH
Confidence            76 6666777899999999999 567789999999999999975 56677888889999999999987 99999999999


Q ss_pred             HHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 039015          613 LLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHE  662 (685)
Q Consensus       613 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~  662 (685)
                      |.+++.+++.. .+.+.. .|+++.|+.++.+++..++..|.+.|..+..
T Consensus       323 L~~l~~~~~~~-~~~~~~-~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~  370 (530)
T 1wa5_B          323 VGNIVTGNDLQ-TQVVIN-AGVLPALRLLLSSPKENIKKEACWTISNITA  370 (530)
T ss_dssp             HHHHTTSCHHH-HHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHH-HHHHHH-cchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            99999876443 444455 7999999999999999999999999998875

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.91  E-value=6.3e-23  Score=208.35  Aligned_cols=236  Identities=22%  Similarity=0.297  Sum_probs=212.7

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHhhcc-ccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-chhHHH
Q 039015          421 GCIPSLLKLLSSKDSSTQENAIAALLNL-SKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIAS-IEEYRK  498 (685)
Q Consensus       421 G~ip~Lv~lL~s~~~~~~~~A~~aL~nL-s~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~~  498 (685)
                      ...+.++.+|.+++++++..|+++|.++ +.+++++..+++.|+++.|+.+|+++ +.+++..|+++|.+|+. .++++.
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHHH
Confidence            5689999999999999999999999765 55667788999999999999999999 89999999999999997 678999


Q ss_pred             HhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcH-HHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC
Q 039015          499 LIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNH-WRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK  577 (685)
Q Consensus       499 ~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~-~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~  577 (685)
                      .+.. .|+++.|+.+|+++++.++..|+++|.||+.+.+++ ..+++.|+++.|+++| .+++..++..|+.+|.+|+..
T Consensus        91 ~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~  168 (252)
T 4db8_A           91 AVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG  168 (252)
T ss_dssp             HHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence            9998 899999999999999999999999999999999888 8899999999999999 567889999999999999984


Q ss_pred             -hhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHH
Q 039015          578 -LDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASAL  656 (685)
Q Consensus       578 -~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~l  656 (685)
                       ++.+..+.+.|+++.|+.+++++ ++.+++.|+.+|.+|+..++ .....+.+ .|+++.|+.++.++++.+++.|.++
T Consensus       169 ~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~-~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~A~~~  245 (252)
T 4db8_A          169 GNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGN-EQKQAVKE-AGALEKLEQLQSHENEKIQKEAQEA  245 (252)
T ss_dssp             CHHHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCH-HHHHHHHH-TTHHHHHHTTTTCSSSHHHHTHHHH
T ss_pred             ChHHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCH-HHHHHHHH-CCcHHHHHHHhCCCCHHHHHHHHHH
Confidence             56777788999999999999988 99999999999999997654 44555555 8999999999999999999999999


Q ss_pred             HHHHHH
Q 039015          657 IRILHE  662 (685)
Q Consensus       657 L~~l~~  662 (685)
                      |..|..
T Consensus       246 L~~l~~  251 (252)
T 4db8_A          246 LEKLQS  251 (252)
T ss_dssp             HHTTC-
T ss_pred             HHHHhc
Confidence            987643

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.90  E-value=4.6e-22  Score=219.03  Aligned_cols=281  Identities=16%  Similarity=0.189  Sum_probs=245.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccCc--chh
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLSKHC--KSK  455 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~--~~k  455 (685)
                      +.++.|++.|.+++++.+..|++.|.+++..+++++..+.+.|++|.|+.+|.+ .+..++..|+++|.+|+.+.  ..+
T Consensus       107 ~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~  186 (450)
T 2jdq_A          107 GAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPE  186 (450)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCC
Confidence            468999999999999999999999999998777899999999999999999996 78999999999999999765  233


Q ss_pred             HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015          456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM  534 (685)
Q Consensus       456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  534 (685)
                      ..++ .|+++.|+.+|..+ +.+++..|+++|.+|+... +.+..+.. .|+++.|+.+|.++++.++..|+.+|.+|+.
T Consensus       187 ~~~~-~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  263 (450)
T 2jdq_A          187 FAKV-SPCLNVLSWLLFVS-DTDVLADACWALSYLSDGPNDKIQAVID-AGVCRRLVELLMHNDYKVVSPALRAVGNIVT  263 (450)
T ss_dssp             GGGT-GGGHHHHHHHTTCC-CHHHHHHHHHHHHHHTSSSHHHHHHHHH-TTTHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHH-HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHCCCcHHHHHHHH-cCcHHHHHHHHCCCchhHHHHHHHHHHHHhh
Confidence            3333 89999999999988 8999999999999999864 66777777 8999999999999999999999999999998


Q ss_pred             CCC-cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHH
Q 039015          535 HSG-NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE-KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSL  612 (685)
Q Consensus       535 ~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~  612 (685)
                      ..+ ....+++.|+++.|+.+| .+++..++..|+.+|.+++. ++.....+.+.|+++.|+.++.++ ++.++..|+++
T Consensus       264 ~~~~~~~~~~~~~~l~~L~~ll-~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~  341 (450)
T 2jdq_A          264 GDDIQTQVILNCSALQSLLHLL-SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWA  341 (450)
T ss_dssp             SCHHHHHHHHTTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred             CChHHHHHHHHCccHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHH
Confidence            765 455678899999999999 56788999999999999996 567777888888999999999988 99999999999


Q ss_pred             HHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc
Q 039015          613 LLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYE  665 (685)
Q Consensus       613 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~  665 (685)
                      |.+++.++.+.....+.. .|+++.|+.++.+++++++..|.+.|..+....+
T Consensus       342 L~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  393 (450)
T 2jdq_A          342 ITNATSGGSAEQIKYLVE-LGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE  393 (450)
T ss_dssp             HHHHHHHCCHHHHHHHHH-HTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHH-CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence            999998744444454554 7899999999999999999999888887766543

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.90  E-value=1.2e-23  Score=210.48  Aligned_cols=196  Identities=16%  Similarity=0.175  Sum_probs=175.4

Q ss_pred             HHHHHHHHHhcCCCH--HHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhcccc-Ccchh
Q 039015          379 LLANFISDRLLEGTS--EEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSK-HCKSK  455 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~--~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~-~~~~k  455 (685)
                      ..++.|++.|.++++  +.+..|+..|++++.+++.+|..+++.|+||.|+.+|++++.++|+.|+++|.||+. +++||
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            458999999999988  889999999999999899999999999999999999999999999999999999998 46899


Q ss_pred             HHHHhcCcHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhc---cC-------------C
Q 039015          456 SMVVESGGLDFIVDMVK-KGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR---DG-------------T  518 (685)
Q Consensus       456 ~~i~~~g~i~~Lv~lL~-~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~---~~-------------~  518 (685)
                      ..|++.|+|++|+++|+ .+ +.+++++|+++|++||..+++|..|.+  ++|++|++++.   +|             +
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~-~~~~~e~a~~aL~nLS~~~~~k~~i~~--~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~  164 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTR-DLETKKQITGLLWNLSSNDKLKNLMIT--EALLTLTENIIIPFSGWPEGDYPKANGLLD  164 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTSGGGHHHHHH--HHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred             HHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcChhhHHHHHh--ccHHHHHHHHhccccCCcccccccccccch
Confidence            99999999999999998 46 899999999999999999999999987  47999999763   12             4


Q ss_pred             HHHHHHHHHHHHHhcCCC-CcHHHHHhc-CChHHHHHHhccC-----CChhHHHHHHHHHHHHhcC
Q 039015          519 DRSKKNALVAIFGLLMHS-GNHWRFLAA-GAVPLLLNLLTSS-----DSEELITDSLAVLATLAEK  577 (685)
Q Consensus       519 ~~~~~~A~~aL~nLs~~~-~n~~~iv~~-G~v~~Lv~lL~~~-----~~~~~~~~al~~L~~La~~  577 (685)
                      +.++.+|+.+|+||+..+ ++|..|.+. |+|+.|+.+++..     .+...++.|+.+|.||+..
T Consensus       165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            589999999999999854 799999986 6689999999631     3567889999999999864

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.90  E-value=5.2e-22  Score=224.43  Aligned_cols=282  Identities=17%  Similarity=0.195  Sum_probs=248.7

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc-chhHH
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-KSKSM  457 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~k~~  457 (685)
                      +.++.|+..|.+++++++..|++.|.+++..++.++..+.+.|++|.|+.+|.+.+..++..|+++|.+|+.+. .....
T Consensus       173 g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~  252 (530)
T 1wa5_B          173 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDW  252 (530)
T ss_dssp             TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcH
Confidence            46899999999999999999999999999877889999999999999999999999999999999999999876 55556


Q ss_pred             HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 039015          458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS  536 (685)
Q Consensus       458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~  536 (685)
                      ....|+++.|+.+|.++ +.+++..|+++|.+|+... +....+.. .|+++.|+.+|.++++.++..|+.+|.||+...
T Consensus       253 ~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~  330 (530)
T 1wa5_B          253 SVVSQALPTLAKLIYSM-DTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHESTLVQTPALRAVGNIVTGN  330 (530)
T ss_dssp             HHHGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHhHHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHh-cCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCC
Confidence            66789999999999998 8999999999999999764 56667776 899999999999999999999999999999765


Q ss_pred             C-cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHH
Q 039015          537 G-NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE-KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLL  614 (685)
Q Consensus       537 ~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~  614 (685)
                      + ....+++.|+++.|+.+| .+++..++..|+.+|.+|+. ++.....+++.|+++.|+.+|.++ ++.++..|+++|.
T Consensus       331 ~~~~~~~~~~~~l~~L~~lL-~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~  408 (530)
T 1wa5_B          331 DLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAIS  408 (530)
T ss_dssp             HHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcchHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHH
Confidence            4 566778899999999999 56678999999999999986 566677788899999999999988 9999999999999


Q ss_pred             HHhccCcH--HHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc
Q 039015          615 ALCINGGA--NVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYE  665 (685)
Q Consensus       615 ~L~~~~~~--~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~  665 (685)
                      +++..++.  .....+.. .|+++.|+.++.++++.++..|.+.|..+-...+
T Consensus       409 ~l~~~~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~  460 (530)
T 1wa5_B          409 NASSGGLQRPDIIRYLVS-QGCIKPLCDLLEIADNRIIEVTLDALENILKMGE  460 (530)
T ss_dssp             HHHHHTTTCTHHHHHHHH-TTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCcHHHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence            99987544  44555555 8999999999999999999998888887766543

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.90  E-value=5.5e-22  Score=218.35  Aligned_cols=279  Identities=16%  Similarity=0.157  Sum_probs=244.0

Q ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc-chhH
Q 039015          379 LLANFISDRLLEG-TSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-KSKS  456 (685)
Q Consensus       379 ~~i~~Lv~~L~s~-~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~k~  456 (685)
                      +.++.|++.|.++ +++.+..|++.|.+++..+.+++..+++.|++|.|+.+|.++++.+++.|+++|.+++.+. .++.
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~  143 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD  143 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence            4689999999888 8999999999999999877788888899999999999999999999999999999999876 5688


Q ss_pred             HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch--hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015          457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE--EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM  534 (685)
Q Consensus       457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  534 (685)
                      .+++.|+++.|+.+|+.+.+.+++..|+++|.+|+...  ..+..+ . .|+++.|+.++.++++..+..|+++|.+|+.
T Consensus       144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~  221 (450)
T 2jdq_A          144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-V-SPCLNVLSWLLFVSDTDVLADACWALSYLSD  221 (450)
T ss_dssp             HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-T-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTS
T ss_pred             HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-H-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHC
Confidence            88899999999999996438999999999999999764  222222 2 6899999999999999999999999999998


Q ss_pred             CC-CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCh-hcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHH
Q 039015          535 HS-GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKL-DGTIAILHHGALDMIMKILDSCTSRAGKEYCVSL  612 (685)
Q Consensus       535 ~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~-~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~  612 (685)
                      +. ++...+++.|+++.|+.+| .+++..++..|+.+|.+|+... .....+.+.|+++.|+.++.++ ++.++..|+++
T Consensus       222 ~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~  299 (450)
T 2jdq_A          222 GPNDKIQAVIDAGVCRRLVELL-MHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWT  299 (450)
T ss_dssp             SSHHHHHHHHHTTTHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHH
T ss_pred             CCcHHHHHHHHcCcHHHHHHHH-CCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHH
Confidence            65 5677788999999999999 5778899999999999999864 4455678888899999999987 99999999999


Q ss_pred             HHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015          613 LLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF  663 (685)
Q Consensus       613 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~  663 (685)
                      |.+++.++... .+.+.. .|+++.|+.++.++++.++..|.+.|..+...
T Consensus       300 L~~l~~~~~~~-~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~  348 (450)
T 2jdq_A          300 ISNITAGNRAQ-IQTVID-ANIFPALISILQTAEFRTRKEAAWAITNATSG  348 (450)
T ss_dssp             HHHHTTSCHHH-HHHHHH-TTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHH-HHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence            99999866444 444555 79999999999999999999999999888654

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.90  E-value=6e-23  Score=205.43  Aligned_cols=195  Identities=13%  Similarity=0.198  Sum_probs=174.6

Q ss_pred             CHHHHHHhhcCCCH--HHHHHHHHHhhcccc-CcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-chhHH
Q 039015          422 CIPSLLKLLSSKDS--STQENAIAALLNLSK-HCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIAS-IEEYR  497 (685)
Q Consensus       422 ~ip~Lv~lL~s~~~--~~~~~A~~aL~nLs~-~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~  497 (685)
                      .+|.|+.+|.++++  .++..|+++|.+|+. ++++|..|++.|+|++||++|+++ +.++++.|+++|.+|+. ++++|
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~-~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ-NEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHH
Confidence            58999999999888  899999999999996 557899999999999999999999 99999999999999998 57999


Q ss_pred             HHhhcCCCcHHHHHHHhc-cCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhc---cC------------CCh
Q 039015          498 KLIGENPEAIPALVDMVR-DGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLT---SS------------DSE  561 (685)
Q Consensus       498 ~~i~~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~---~~------------~~~  561 (685)
                      ..|.+ .|+||+|+++|. +++...++.|+.+|+||+.+++++..+++. ++++|++++.   ++            .+.
T Consensus        88 ~~I~~-~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~  165 (233)
T 3tt9_A           88 LEVAE-LNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDF  165 (233)
T ss_dssp             HHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred             HHHHH-cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchH
Confidence            99999 999999999998 478999999999999999999999999875 6999998763   11            256


Q ss_pred             hHHHHHHHHHHHHhc-ChhcHHHHHhcCC-hHHHHHHhhcC-----CChhHHHHHHHHHHHHhcc
Q 039015          562 ELITDSLAVLATLAE-KLDGTIAILHHGA-LDMIMKILDSC-----TSRAGKEYCVSLLLALCIN  619 (685)
Q Consensus       562 ~~~~~al~~L~~La~-~~~~~~~i~~~g~-v~~Lv~lL~~~-----~s~~~~e~a~~~L~~L~~~  619 (685)
                      .+.+.|.++|.||+. ++++|.++.+.+| |+.|+.+++.+     .+...+|+|+.+|.+||..
T Consensus       166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            899999999999987 5799999999877 89999998863     2567899999999999975

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.89  E-value=1.1e-22  Score=228.96  Aligned_cols=277  Identities=18%  Similarity=0.172  Sum_probs=247.0

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHh-hCCHHHHHHhhcC-CCHHHHHHHHHHhhccccCcchh
Q 039015          378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVE-VGCIPSLLKLLSS-KDSSTQENAIAALLNLSKHCKSK  455 (685)
Q Consensus       378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~-~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~k  455 (685)
                      .+.++.|+..|+++++..+..|+..|.+++. +..++..+.. .|+++.|+.+|.+ ++..++..|+.+|.+|+.+++++
T Consensus        16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~-~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~   94 (529)
T 1jdh_A           16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL   94 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT-SHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred             HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHc-CCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence            3568999999999999999999999999997 5567777765 4999999999975 48999999999999999999999


Q ss_pred             HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015          456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM  534 (685)
Q Consensus       456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  534 (685)
                      ..|.+.|+++.|+.+|+++ +++++..|+++|.+|+..+ +.+..+.+ .|++|.|+.+|.+++.+.+..++.+|.+|+.
T Consensus        95 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~  172 (529)
T 1jdh_A           95 LAIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNVKFLAITTDCLQILAY  172 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHH-HTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHH-cCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999998 8999999999999999874 67777777 8999999999999999999999999999997


Q ss_pred             C-CCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHH
Q 039015          535 H-SGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLL  613 (685)
Q Consensus       535 ~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L  613 (685)
                      . ++++..+++.|+++.|+++|.++........+..+|.+|+.++.++..+.+.|+++.|+.++.++ ++..++.++++|
T Consensus       173 ~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~~~~a~~~L  251 (529)
T 1jdh_A          173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTL  251 (529)
T ss_dssp             TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS-CHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCC-ChHHHHHHHHHH
Confidence            4 57899999999999999999766677888899999999999999999999999999999999988 999999999999


Q ss_pred             HHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015          614 LALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF  663 (685)
Q Consensus       614 ~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~  663 (685)
                      .+||...+...     ...|+++.|+.++.++++..+..|.++|..|...
T Consensus       252 ~~l~~~~~~~~-----~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~  296 (529)
T 1jdh_A          252 RNLSDAATKQE-----GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN  296 (529)
T ss_dssp             HHHHTTCTTCS-----CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred             HHHhcCChhhH-----HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence            99998753311     1136799999999999999999999999888653

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.89  E-value=2.1e-22  Score=233.17  Aligned_cols=276  Identities=18%  Similarity=0.178  Sum_probs=247.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhh-CCHHHHHHhhcCC-CHHHHHHHHHHhhccccCcchhH
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEV-GCIPSLLKLLSSK-DSSTQENAIAALLNLSKHCKSKS  456 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~-G~ip~Lv~lL~s~-~~~~~~~A~~aL~nLs~~~~~k~  456 (685)
                      +.++.|+..|+++++.++..|+..|.+++.. ..++..+... |+++.|+.+|.+. +.+++..|+.+|.+|+.+++++.
T Consensus        14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~-~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~   92 (644)
T 2z6h_A           14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL   92 (644)
T ss_dssp             TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-TTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHCC-ChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHH
Confidence            4689999999999999999999999999984 4677777754 9999999999874 89999999999999999999999


Q ss_pred             HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC-
Q 039015          457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM-  534 (685)
Q Consensus       457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-  534 (685)
                      .+.+.|+++.|+.+|+++ +.+++..|+.+|.+|+..+ +.+..+.. .|+++.|+.+|++++++.+..++.+|.+|+. 
T Consensus        93 ~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~  170 (644)
T 2z6h_A           93 AIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNVKFLAITTDCLQILAYG  170 (644)
T ss_dssp             HHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHH-CCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc
Confidence            999999999999999998 8999999999999999874 67777777 8999999999999999888889999999996 


Q ss_pred             CCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHH
Q 039015          535 HSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLL  614 (685)
Q Consensus       535 ~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~  614 (685)
                      +++++..+++.|+++.|+++|.+.....++..++.+|.+|+.++.++..+++.|+++.|+.++..+ ++..++.++++|.
T Consensus       171 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~-~~~~~~~a~~~L~  249 (644)
T 2z6h_A          171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLR  249 (644)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCS-CHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHH
Confidence            667999999999999999999666667888999999999999999999999999999999999988 9999999999999


Q ss_pred             HHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015          615 ALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF  663 (685)
Q Consensus       615 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~  663 (685)
                      +||...+..  .   ...|+++.|+.++.++++.++..|.++|..|...
T Consensus       250 nL~~~~~~~--~---~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~  293 (644)
T 2z6h_A          250 NLSDAATKQ--E---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN  293 (644)
T ss_dssp             HHGGGCTTC--C---SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHhhcchhh--h---hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            999875331  1   1136799999999999999999999999888654

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.89  E-value=1.1e-21  Score=220.83  Aligned_cols=280  Identities=16%  Similarity=0.094  Sum_probs=244.8

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccC-cchhHH
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKH-CKSKSM  457 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~-~~~k~~  457 (685)
                      +.++.|++.|++++++.+..|++.|.+++..++.++..+.+.|++|.|+.+|.+++..++..++.+|.+++.. ++++..
T Consensus       101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~  180 (529)
T 1jdh_A          101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI  180 (529)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            4689999999999999999999999999998788899999999999999999999999999999999999975 577999


Q ss_pred             HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 039015          458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG  537 (685)
Q Consensus       458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~  537 (685)
                      +.+.|+++.|+.+|+.+.....+..++.+|.+|+..++++..+.. .|+++.|+.++.++++..+..++++|.||+.+..
T Consensus       181 i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  259 (529)
T 1jdh_A          181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT  259 (529)
T ss_dssp             HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHH-TTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCCh
Confidence            999999999999999885667778899999999999999999998 8999999999999999999999999999997654


Q ss_pred             cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-hhcHHHHHhcCChHHHHHHhhcC-CChhHHHHHHHHHHH
Q 039015          538 NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK-LDGTIAILHHGALDMIMKILDSC-TSRAGKEYCVSLLLA  615 (685)
Q Consensus       538 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~-~~~~~~i~~~g~v~~Lv~lL~~~-~s~~~~e~a~~~L~~  615 (685)
                      ...  ...|+++.|+++| .+.++.++..|+.+|.+|+.+ ++++..+.+.|+++.|++++... .++.+++.|+.+|.+
T Consensus       260 ~~~--~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~n  336 (529)
T 1jdh_A          260 KQE--GMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH  336 (529)
T ss_dssp             TCS--CCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhH--HHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            322  2347899999999 677899999999999999886 57899999999999999988763 247899999999999


Q ss_pred             HhccCcH--HHHHHHHhcCCcHHHHHHHHhcCC-hHHHHHHHHHHHHHHHh
Q 039015          616 LCINGGA--NVVALLVKSPSLMGSLYSLLSQGS-SRASKKASALIRILHEF  663 (685)
Q Consensus       616 L~~~~~~--~~~~~l~~~~g~i~~L~~Ll~~g~-~~~k~~A~~lL~~l~~~  663 (685)
                      |+.++++  ..+..+.. .|+++.|+.++.+++ ...++.|.++|..+...
T Consensus       337 l~~~~~~~~~~~~~i~~-~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~  386 (529)
T 1jdh_A          337 LTSRHQEAEMAQNAVRL-HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC  386 (529)
T ss_dssp             HTSSSTTHHHHHHHHHH-TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred             HHcCCchHHHHHHHHHH-cCChhHHHHHhccccchHHHHHHHHHHHHHhcC
Confidence            9986543  24555665 789999999999986 48888888888877643

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.88  E-value=2e-21  Score=225.04  Aligned_cols=275  Identities=21%  Similarity=0.187  Sum_probs=239.7

Q ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc-chhH
Q 039015          379 LLANFISDRLLEG-TSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-KSKS  456 (685)
Q Consensus       379 ~~i~~Lv~~L~s~-~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~k~  456 (685)
                      +.++.|++.|.++ +++.+..|+..|++|+. +.+++..+.+.|+||.|+.+|.++++.++..|+++|.||+.+. ..+.
T Consensus        56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~  134 (644)
T 2z6h_A           56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM  134 (644)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-SHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred             ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHH
Confidence            5689999999765 89999999999999997 5679999999999999999999999999999999999999875 5577


Q ss_pred             HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-chhHHHHhhcCCCcHHHHHHHhccCC-HHHHHHHHHHHHHhcC
Q 039015          457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIAS-IEEYRKLIGENPEAIPALVDMVRDGT-DRSKKNALVAIFGLLM  534 (685)
Q Consensus       457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~A~~aL~nLs~  534 (685)
                      .+++.|+++.|+.+|+++ +...+..++.+|.+|+. +++++..+.. .|+++.|+.+|++++ ...+..++.+|+||+.
T Consensus       135 ~v~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~~i~~-~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~  212 (644)
T 2z6h_A          135 AVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  212 (644)
T ss_dssp             HHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHCCChHHHHHHHCcC-CHHHHHHHHHHHHHHHhcCcHHHHHHHH-cCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence            888999999999999998 88888888999999996 6799999998 899999999998876 5677899999999999


Q ss_pred             CCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHH
Q 039015          535 HSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLL  614 (685)
Q Consensus       535 ~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~  614 (685)
                      +++++..+++.|+++.|+.++ .+.+..++..++.+|.+|+......  ....+.++.|+.++++. ++.+++.|+++|.
T Consensus       213 ~~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~-d~~v~~~a~~aL~  288 (644)
T 2z6h_A          213 CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSD-DINVVTCAAGILS  288 (644)
T ss_dssp             CTTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred             CcccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence            999999999999999999999 5567899999999999998754321  11124689999999987 9999999999999


Q ss_pred             HHhccCcHHHHHHHHhcCCcHHHHHHHHhcC-C-hHHHHHHHHHHHHHHH
Q 039015          615 ALCINGGANVVALLVKSPSLMGSLYSLLSQG-S-SRASKKASALIRILHE  662 (685)
Q Consensus       615 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g-~-~~~k~~A~~lL~~l~~  662 (685)
                      +|+.+++ ..+..+.+ .|+++.|+.++.+. + +.++..|...|..|..
T Consensus       289 ~L~~~~~-~~~~~v~~-~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~  336 (644)
T 2z6h_A          289 NLTCNNY-KNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTS  336 (644)
T ss_dssp             HHHTTCH-HHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             HHHcCCH-HHHHHHHH-cCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence            9998764 34555555 89999999999874 3 6888999999988853

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.88  E-value=2e-21  Score=229.40  Aligned_cols=274  Identities=22%  Similarity=0.235  Sum_probs=229.7

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV  458 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i  458 (685)
                      ..++.+++.|.+++.+.+..++..|+..      ++..+. .|+||.|+.+|.++++.+++.|+.+|.+|+.++.++..+
T Consensus       115 ~~i~~lv~~L~~~~~~~r~~a~~~l~~~------~~~~i~-~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i  187 (780)
T 2z6g_A          115 SAHPTNVQRLAEPSQMLKHAVVNLINYQ------DDAELA-TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAI  187 (780)
T ss_dssp             -----------CCSCHHHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred             ccHHHHHHHhcCccHHHHHHHHHHHHhh------hHHHHH-hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHH
Confidence            3578899999999988888888887744      334454 899999999999999999999999999999998888888


Q ss_pred             Hh-cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-
Q 039015          459 VE-SGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS-  536 (685)
Q Consensus       459 ~~-~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-  536 (685)
                      ++ .|+++.|+.+|+++.+.+++.+|+.+|.+|+..++++..|+. .|+|+.|+.+|+++++.++..|+++|.||+.+. 
T Consensus       188 ~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~-~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~  266 (780)
T 2z6g_A          188 MRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFK-SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQE  266 (780)
T ss_dssp             TTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST
T ss_pred             HhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCh
Confidence            85 599999999998665899999999999999999999999998 899999999999999999999999999999875 


Q ss_pred             CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHH
Q 039015          537 GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE-KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLA  615 (685)
Q Consensus       537 ~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~  615 (685)
                      +.+..+++.|+++.|+.+| .+.+..+...++.+|.+++. +++++..+.+.|+++.|+.+++.+.....++.++.+|++
T Consensus       267 ~~~~~v~~~g~v~~Lv~lL-~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~  345 (780)
T 2z6g_A          267 GAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKV  345 (780)
T ss_dssp             THHHHHHHTTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHcCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            5666677899999999999 45677888999999999986 688999999999999999999987455667789999999


Q ss_pred             HhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 039015          616 LCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFY  664 (685)
Q Consensus       616 L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~  664 (685)
                      ||..  ......+.. .|+++.|+.++.+++...++.|.+.|..|....
T Consensus       346 Ls~~--~~~~~~i~~-~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~  391 (780)
T 2z6g_A          346 LSVC--SSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA  391 (780)
T ss_dssp             HHTS--TTHHHHHHH-TTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             hhcC--hHHHHHHHH-hchHHHHHHHHcCCchHHHHHHHHHHHHHhccc
Confidence            9976  344556666 899999999999999999999988888887543

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.87  E-value=3.1e-21  Score=190.31  Aligned_cols=195  Identities=21%  Similarity=0.263  Sum_probs=179.4

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccC-cchhHHH
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKH-CKSKSMV  458 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~-~~~k~~i  458 (685)
                      ..+.|+..|.+++++.+..|++.|.+++..+++++..+.+.|++|.|+.+|.++++.++..|+++|.||+.+ ++++..+
T Consensus        13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i   92 (210)
T 4db6_A           13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV   92 (210)
T ss_dssp             CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence            467889999999999999999999999988889999999999999999999999999999999999999964 5778999


Q ss_pred             HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-C
Q 039015          459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH-S  536 (685)
Q Consensus       459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~  536 (685)
                      ++.|+++.|+.+|+++ +..++..|+++|.+|+..+ +.+..+.. .|+++.|+++|+++++.++..|+++|.||+.+ +
T Consensus        93 ~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  170 (210)
T 4db6_A           93 IDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGN  170 (210)
T ss_dssp             HHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred             HHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence            9999999999999999 9999999999999999654 66677777 89999999999999999999999999999987 5


Q ss_pred             CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC
Q 039015          537 GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK  577 (685)
Q Consensus       537 ~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~  577 (685)
                      +++..+++.|+++.|++++ .+++..+++.|+.+|.+|+.+
T Consensus       171 ~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~aL~~l~~~  210 (210)
T 4db6_A          171 EQKQAVKEAGALEKLEQLQ-SHENEKIQKEAQEALEKLQSH  210 (210)
T ss_dssp             HHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHhcC
Confidence            6888899999999999999 577899999999999999863

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.87  E-value=5.1e-21  Score=188.83  Aligned_cols=198  Identities=22%  Similarity=0.283  Sum_probs=178.3

Q ss_pred             HhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccC-cchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-chh
Q 039015          418 VEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKH-CKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIAS-IEE  495 (685)
Q Consensus       418 ~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~  495 (685)
                      ...|+.|.|+.+|.+++..++..|+++|.+|+.+ ++++..+++.|+++.|+.+|+++ +.+++..|+++|.+|+. +++
T Consensus         9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~   87 (210)
T 4db6_A            9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNE   87 (210)
T ss_dssp             ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHH
T ss_pred             cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcH
Confidence            3468899999999999999999999999999954 56788999999999999999999 99999999999999995 668


Q ss_pred             HHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHH
Q 039015          496 YRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS-GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATL  574 (685)
Q Consensus       496 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L  574 (685)
                      ++..+.+ .|+++.|+.+|.++++.++..|+++|.||+.+. +++..+++.|+++.|+++| .+++..++..|+.+|.+|
T Consensus        88 ~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~aL~~l  165 (210)
T 4db6_A           88 QIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNI  165 (210)
T ss_dssp             HHHHHHH-TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHH
Confidence            8888988 999999999999999999999999999999755 4667889999999999999 566889999999999999


Q ss_pred             hcC-hhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhcc
Q 039015          575 AEK-LDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCIN  619 (685)
Q Consensus       575 a~~-~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~  619 (685)
                      +.. ++.+..+.+.|+++.|++++.++ ++.+++.|+.+|.+|+.+
T Consensus       166 ~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~  210 (210)
T 4db6_A          166 ASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQSH  210 (210)
T ss_dssp             HTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC-
T ss_pred             HcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhcC
Confidence            987 88888899999999999999987 999999999999999853

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.87  E-value=3.6e-21  Score=227.27  Aligned_cols=277  Identities=18%  Similarity=0.187  Sum_probs=245.8

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhh-CCHHHHHHhhcC-CCHHHHHHHHHHhhccccCcchh
Q 039015          378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEV-GCIPSLLKLLSS-KDSSTQENAIAALLNLSKHCKSK  455 (685)
Q Consensus       378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~-G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~k  455 (685)
                      .+.++.|+..|.+.++.+|..|+..|.+|+. +..++..+.+. |+++.|+.+|.+ .+..++..|+.+|.+|+.+++++
T Consensus       149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~-~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~  227 (780)
T 2z6g_A          149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL  227 (780)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT-SHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred             hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhC-CChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence            4578999999999999999999999999997 45677777754 899999999976 48999999999999999999999


Q ss_pred             HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015          456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM  534 (685)
Q Consensus       456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  534 (685)
                      ..|.+.|+++.|+.+|+++ +..++..|+++|.+|+... +.+..+.. .|+++.|+.+|.+++...+..|+.+|.+|+.
T Consensus       228 ~~i~~~g~I~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~v~~-~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~  305 (780)
T 2z6g_A          228 LAIFKSGGIPALVNMLGSP-VDSVLFHAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNVKFLAITTDCLQILAY  305 (780)
T ss_dssp             HHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHH-cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999 8999999999999999874 67777777 8999999999999899999999999999996


Q ss_pred             -CCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHH
Q 039015          535 -HSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLL  613 (685)
Q Consensus       535 -~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L  613 (685)
                       +++++..+++.|+++.|+.+|.........+.++.+|.+|+.++.++..+++.|+++.|+.++.++ ++..++.|+++|
T Consensus       306 ~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~~~~a~~~L  384 (780)
T 2z6g_A          306 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTL  384 (780)
T ss_dssp             TCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCS-CHHHHHHHHHHH
T ss_pred             CChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCC-chHHHHHHHHHH
Confidence             467899999999999999999766667778889999999999999999999999999999999987 899999999999


Q ss_pred             HHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015          614 LALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF  663 (685)
Q Consensus       614 ~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~  663 (685)
                      .+||......     ....++++.|+.++.+.++.++..|.++|..|...
T Consensus       385 ~~L~~~~~~~-----~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~  429 (780)
T 2z6g_A          385 RNLSDAATKQ-----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN  429 (780)
T ss_dssp             HHHHTTCTTC-----SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred             HHHhccchhh-----hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence            9999875331     01146799999999999999999999999888653

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.86  E-value=3.5e-21  Score=219.50  Aligned_cols=284  Identities=10%  Similarity=0.136  Sum_probs=233.6

Q ss_pred             hhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhcCCc--------------------------------------hhhHH
Q 039015          377 MKLLANFISDRLLE-GTSEEKNKVAYEVRLLTKSSIF--------------------------------------NRSCL  417 (685)
Q Consensus       377 ~~~~i~~Lv~~L~s-~~~~~~~~a~~~L~~La~~~~~--------------------------------------~r~~i  417 (685)
                      ..+.+..|+..+++ .+......++..|.|++...+.                                      ++..+
T Consensus       374 d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l  453 (778)
T 3opb_A          374 NESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYI  453 (778)
T ss_dssp             CHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHH
Confidence            45568888888874 6667788888888888753321                                      56778


Q ss_pred             HhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHH---HHHHHHHHHHHhcCch
Q 039015          418 VEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVE---ARQHAAATLFYIASIE  494 (685)
Q Consensus       418 ~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e---~~~~Aa~~L~~Ls~~~  494 (685)
                      .++|+||.|+.+++++++.+++.|+++|.|||.+.++|..+++.|++++|+.+|.++ +..   .+.+|+.+|.+|+...
T Consensus       454 ~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~-~~~~~~~k~~AA~ALArLlis~  532 (778)
T 3opb_A          454 LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANK-QDIGEPIRILGCRALTRMLIFT  532 (778)
T ss_dssp             TTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC----CCHHHHHHHHHHHHHHHTS
T ss_pred             HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CCcchHHHHHHHHHHHHHHhcC
Confidence            899999999999999999999999999999999999999999999999999999988 443   8999999999998766


Q ss_pred             hHHHHhhc--CCCcHHHHHHHhcc--CCH------------HHHHHHHHHHHHhcCCCCc-----HHHHHhc-CChHHHH
Q 039015          495 EYRKLIGE--NPEAIPALVDMVRD--GTD------------RSKKNALVAIFGLLMHSGN-----HWRFLAA-GAVPLLL  552 (685)
Q Consensus       495 ~~~~~i~~--~~g~i~~Lv~lL~~--~~~------------~~~~~A~~aL~nLs~~~~n-----~~~iv~~-G~v~~Lv  552 (685)
                      +....++.  ..|+|++|+.+|..  +..            ..+..|+.||.||+..++|     +.++++. |+++.|.
T Consensus       533 np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~  612 (778)
T 3opb_A          533 NPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIE  612 (778)
T ss_dssp             CHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHH
T ss_pred             CHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHH
Confidence            66666642  14899999999983  211            2377999999999998743     7889996 9999999


Q ss_pred             HHhccCCChhHHHHHHHHHHHHhcChhcH-HHHHhcC------ChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHH
Q 039015          553 NLLTSSDSEELITDSLAVLATLAEKLDGT-IAILHHG------ALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVV  625 (685)
Q Consensus       553 ~lL~~~~~~~~~~~al~~L~~La~~~~~~-~~i~~~g------~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~  625 (685)
                      ++| .+++..++..|+.+++||+.++++. ..+...+      .++.|+.+++.+ +...+..|+++|.+++... +.+.
T Consensus       613 ~LL-~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~-~~ia  689 (778)
T 3opb_A          613 NLM-LDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLS-DVESQRAVAAIFANIATTI-PLIA  689 (778)
T ss_dssp             HGG-GCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHC-HHHH
T ss_pred             HHH-hCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCC-hHHH
Confidence            999 5568899999999999999999875 3554322      378899999988 9999999999999997654 4455


Q ss_pred             HHHHhcCCcHHHHHHHHhc--CChHHHHHHHHHHHHHHHhh
Q 039015          626 ALLVKSPSLMGSLYSLLSQ--GSSRASKKASALIRILHEFY  664 (685)
Q Consensus       626 ~~l~~~~g~i~~L~~Ll~~--g~~~~k~~A~~lL~~l~~~~  664 (685)
                      +.+.+..++++.|+.++++  .++..+..+..++..|....
T Consensus       690 ~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~  730 (778)
T 3opb_A          690 KELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI  730 (778)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence            6666635899999999999  78899999999999988743

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.82  E-value=2.3e-19  Score=204.59  Aligned_cols=279  Identities=13%  Similarity=0.146  Sum_probs=228.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhh-CCHHHHHHhhcC-CCHHHHHHHHHHhhccccCcc---
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEV-GCIPSLLKLLSS-KDSSTQENAIAALLNLSKHCK---  453 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~-G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~---  453 (685)
                      ..++.+++.|.+++.+.+..|++.|..++. +++.|..+++. |+++.|+.+|++ .+..+.-.++.+|.||+.+.+   
T Consensus       334 ~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~  412 (778)
T 3opb_A          334 QLSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXX  412 (778)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCC
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccc
Confidence            367888899988887789999999999997 78999999876 779999999995 788899999999999987432   


Q ss_pred             ------------------------------------hhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHH
Q 039015          454 ------------------------------------SKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYR  497 (685)
Q Consensus       454 ------------------------------------~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~  497 (685)
                                                          ++..+.++|+++.|+.+++++ ++.+++.|+++|.+|+.++++|
T Consensus       413 ~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~-s~~~re~A~~aL~nLS~d~~~R  491 (778)
T 3opb_A          413 XXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNL-SPNCKQQVVRIIYNITRSKNFI  491 (778)
T ss_dssp             CCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGS-CHHHHHHHHHHHHHHHTSGGGH
T ss_pred             hhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHH
Confidence                                                345666899999999999999 9999999999999999999999


Q ss_pred             HHhhcCCCcHHHHHHHhccCCHH---HHHHHHHHHHHhcCCCCcHHHHHh---cCChHHHHHHhccCCCh----------
Q 039015          498 KLIGENPEAIPALVDMVRDGTDR---SKKNALVAIFGLLMHSGNHWRFLA---AGAVPLLLNLLTSSDSE----------  561 (685)
Q Consensus       498 ~~i~~~~g~i~~Lv~lL~~~~~~---~~~~A~~aL~nLs~~~~n~~~iv~---~G~v~~Lv~lL~~~~~~----------  561 (685)
                      ..+.+ .|+++.|+.+|.+++..   ++..|+.||.+|+...+....+-.   .|+|++|+.+|..++..          
T Consensus       492 ~~lvq-qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~  570 (778)
T 3opb_A          492 PQLAQ-QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQ  570 (778)
T ss_dssp             HHHHH-TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCC
T ss_pred             HHHHH-CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccccc
Confidence            99999 99999999999988754   899999999999966554433211   38999999999522211          


Q ss_pred             ---hHHHHHHHHHHHHhcCh-----hcHHHHHhc-CChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHH-hc
Q 039015          562 ---ELITDSLAVLATLAEKL-----DGTIAILHH-GALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLV-KS  631 (685)
Q Consensus       562 ---~~~~~al~~L~~La~~~-----~~~~~i~~~-g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~-~~  631 (685)
                         --.-.|+.+|.|||..+     +.+..|+.. |+++.|..+|.+. +..++..|+.++.+|+.+. +...+.+. .+
T Consensus       571 ~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~-n~~VrrAA~elI~NL~~~~-e~i~~k~~~~~  648 (778)
T 3opb_A          571 IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE-NVPLQRSTLELISNMMSHP-LTIAAKFFNLE  648 (778)
T ss_dssp             CCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHTSG-GGTGGGTSCCS
T ss_pred             ccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC-CHHHHHHHHHHHHHHhCCc-HHHHHHHHhhc
Confidence               12668999999999986     347778885 8899999999887 8999999999999999863 21111222 11


Q ss_pred             ----CCcHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 039015          632 ----PSLMGSLYSLLSQGSSRASKKASALIRILHE  662 (685)
Q Consensus       632 ----~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~  662 (685)
                          .+-++.|+.|+.+++...++.|.++|.++..
T Consensus       649 ~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts  683 (778)
T 3opb_A          649 NPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT  683 (778)
T ss_dssp             SHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             CchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence                1137899999999999999999999999964

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.80  E-value=3.3e-18  Score=178.05  Aligned_cols=183  Identities=13%  Similarity=0.141  Sum_probs=165.1

Q ss_pred             CHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHH-hhcCCCHHHHHHHHHHhhccccCc-chhHHHHhcCcHHHHHH
Q 039015          392 TSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLK-LLSSKDSSTQENAIAALLNLSKHC-KSKSMVVESGGLDFIVD  469 (685)
Q Consensus       392 ~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~-lL~s~~~~~~~~A~~aL~nLs~~~-~~k~~i~~~g~i~~Lv~  469 (685)
                      +.+.+..|+..|..++. +.++...|.+.|++|.|+. +|.++++.+++.|+++|.|++.++ ..+..+++.|++++|+.
T Consensus        53 ~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~  131 (296)
T 1xqr_A           53 DQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR  131 (296)
T ss_dssp             HHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence            34678899999999997 6678889999999999999 999999999999999999999876 56889999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCcHHHHHhcCC
Q 039015          470 MVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH-SGNHWRFLAAGA  547 (685)
Q Consensus       470 lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n~~~iv~~G~  547 (685)
                      +|+++.+.+++.+|+++|.+|+.+. +....+.. .|+++.|+.+|++++..+++.|+++|.+|+.. ++.+..++++|+
T Consensus       132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~-~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~  210 (296)
T 1xqr_A          132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLR-LDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM  210 (296)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred             HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence            9996447899999999999998754 56667777 89999999999999999999999999999864 568899999999


Q ss_pred             hHHHHHHhccCCChhHHHHHHHHHHHHhcC
Q 039015          548 VPLLLNLLTSSDSEELITDSLAVLATLAEK  577 (685)
Q Consensus       548 v~~Lv~lL~~~~~~~~~~~al~~L~~La~~  577 (685)
                      ++.|+.+| .+++..+++.|+.+|.+|+..
T Consensus       211 i~~Lv~LL-~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          211 VQQLVALV-RTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHHHHHH-TSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHH-cCCChhHHHHHHHHHHHHHhC
Confidence            99999999 566789999999999999987

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.76  E-value=3.1e-17  Score=170.77  Aligned_cols=183  Identities=16%  Similarity=0.202  Sum_probs=165.5

Q ss_pred             HHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHH-HhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHH
Q 039015          435 SSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVD-MVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVD  512 (685)
Q Consensus       435 ~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~-lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~  512 (685)
                      .+.+..|+..|.++..+.+|+..+.+.|++++|+. +|+++ +++++..|+++|.+++.++ .++..+.+ .|++|.|+.
T Consensus        54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~-~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~-~g~l~~Ll~  131 (296)
T 1xqr_A           54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAAIQEQVLG-LGALRKLLR  131 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHH-CCCHHHHHH
Confidence            46788899999999999899999999999999999 99998 9999999999999998765 68888888 899999999


Q ss_pred             HhccC-CHHHHHHHHHHHHHhcCCC-CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-ChhcHHHHHhcCC
Q 039015          513 MVRDG-TDRSKKNALVAIFGLLMHS-GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE-KLDGTIAILHHGA  589 (685)
Q Consensus       513 lL~~~-~~~~~~~A~~aL~nLs~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~g~  589 (685)
                      +|+++ +..+++.|++||.||+.+. +....++++|+++.|+.+| .+++..++..|+++|.+|+. +++.+..+++.|+
T Consensus       132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL-~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~  210 (296)
T 1xqr_A          132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM-QQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM  210 (296)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred             HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence            99864 7889999999999999765 4567889999999999999 56788999999999999976 4778899999999


Q ss_pred             hHHHHHHhhcCCChhHHHHHHHHHHHHhccCc
Q 039015          590 LDMIMKILDSCTSRAGKEYCVSLLLALCINGG  621 (685)
Q Consensus       590 v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~  621 (685)
                      ++.|+.+|+++ ++.+++.|+.+|.+|+...+
T Consensus       211 i~~Lv~LL~~~-d~~v~~~al~aL~~l~~~~~  241 (296)
T 1xqr_A          211 VQQLVALVRTE-HSPFHEHVLGALCSLVTDFP  241 (296)
T ss_dssp             HHHHHHHHTSC-CSTHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCC-ChhHHHHHHHHHHHHHhCCh
Confidence            99999999988 99999999999999998853

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.76  E-value=5.6e-19  Score=148.28  Aligned_cols=73  Identities=32%  Similarity=0.444  Sum_probs=69.3

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcCc
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGV  349 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~  349 (685)
                      .++++|.||||+++|.|||+++|||+||+.||.+|+.. +.+||.|++.+...+++||..|+++|+.|+.+++.
T Consensus        10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~~   82 (85)
T 2kr4_A           10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQS   82 (85)
T ss_dssp             TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHH
T ss_pred             cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhhh
Confidence            68999999999999999999999999999999999996 78999999999999999999999999999988753

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.75  E-value=9.5e-19  Score=151.25  Aligned_cols=74  Identities=31%  Similarity=0.438  Sum_probs=70.0

Q ss_pred             CCCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcCc
Q 039015          275 GLTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGV  349 (685)
Q Consensus       275 ~~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~  349 (685)
                      ..+|++|.||||+++|.|||+++|||+||+.||.+||.. +.+||.|++++...+++||..|+++|+.|+..|+.
T Consensus        24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~   97 (100)
T 2kre_A           24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQN   97 (100)
T ss_dssp             SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTTC
T ss_pred             ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhhh
Confidence            378999999999999999999999999999999999985 78999999999999999999999999999998864

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.75  E-value=1.4e-18  Score=149.71  Aligned_cols=74  Identities=30%  Similarity=0.399  Sum_probs=70.6

Q ss_pred             CCCCCccCcCccccCCCceeccCc-ccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcCcc
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTG-HTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVS  350 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cg-htfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~~  350 (685)
                      .+|++|.||||+++|.|||+++|| |+|||.||++||.. +.+||.|++++...+++||..|+++|+.|+..++..
T Consensus        18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~   92 (98)
T 1wgm_A           18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ   92 (98)
T ss_dssp             SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred             cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence            789999999999999999999999 99999999999987 789999999999999999999999999999998864

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.74  E-value=3.5e-18  Score=162.05  Aligned_cols=76  Identities=30%  Similarity=0.458  Sum_probs=71.3

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcCccc
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSI  351 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~~~  351 (685)
                      .+|++|.||||+++|.|||+++|||+||+.||.+|+..++.+||.|+.+++..+++||..|+++|+.|+..|++.+
T Consensus       102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~~  177 (179)
T 2f42_A          102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWVE  177 (179)
T ss_dssp             CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTCC
T ss_pred             CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCcC
Confidence            6799999999999999999999999999999999998754589999999999999999999999999999999754

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=99.74  E-value=2.4e-18  Score=170.33  Aligned_cols=215  Identities=14%  Similarity=0.198  Sum_probs=148.5

Q ss_pred             hHHHHHHHHHHHHHHHHhhcc----CCccccCcHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHhcccCCCCCCH
Q 039015          118 DRVSNQLRLFIRAIGTALDVL----PLAAIDVSSEVKELVDLVMRQARKAIFETDPDDKRVLNDVIRILGRFEDGIRPDK  193 (685)
Q Consensus       118 ~~i~~~f~~~~~~l~~~L~~l----P~~~~~~s~~v~e~v~~l~~q~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  193 (685)
                      --++..++.+.++|..+|.+|    +....++++.|++. ....+++..-+.+.+..+..+.....++.++.+.....+.
T Consensus        28 ~d~s~~~~~~~~q~~~~l~~~~~~~~~~~~~~~~~v~~l-~~~y~~l~~~~~~~~~~~~~~~~~K~~yk~~~d~~~~~~~  106 (267)
T 3htk_C           28 RDLSNIYQQCYKQIDETINQLVDSTSPSTIGIEEQVADI-TSTYKLLSTYESESNSFDEHIKDLKKNFKQSSDACPQIDL  106 (267)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHCCCCSSCSHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCH
Confidence            345556666667777777766    33445577777663 4445566666666667777777777778777788888899


Q ss_pred             HHHH-HHHHhcCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHhhhhhhhhccccchhhhhhhhhccCCC
Q 039015          194 SEVK-RVLDYLGITKWSQCNQEVKFLDSEITIEYLNVDKRSELALLSSLMGFLSYCKCIMFDLVDNEASQQVSKKCCNNM  272 (685)
Q Consensus       194 ~~l~-~~~~~l~l~~~~~~~~E~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (685)
                      +.|. +..+++.+++.+.+..+.....     ....-+.......++.+++.+......+.+...+.+        .++.
T Consensus       107 ~twd~y~~~e~~ap~l~~~~~~~~~~~-----~~~~~~~~~~~~~lk~~~~i~~~P~~~lPd~~~~~d--------DDDI  173 (267)
T 3htk_C          107 STWDKYRTGELTAPKLSELYLNMPTPE-----PATMVNNTDTLKILKVLPYIWNDPTCVIPDLQNPAD--------EDDL  173 (267)
T ss_dssp             THHHHHHHTSSCCCCHHHHHHTCCCCS-----CCSCCCCCHHHHHHHHHHHHHHCTTBCCCCCSSTTC--------SSCC
T ss_pred             HHHHHHhcCCcCCchHHHHHHhccccC-----cccccccchHHHHHHHccccccCCCCCCCCCCCCCC--------Cccc
Confidence            9999 5557799999876655321100     000011234556667777777666655543211101        1111


Q ss_pred             CCCCCCCCccCcCccccCCCceec-cCcccccHHHHHHHHHc-CCCCCCC--CCccccCCCCcccHHHHhhHHHHHHh
Q 039015          273 LGGLTPDDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRA-GNSTCPK--TGERLQSKELLVNLVLKRIIQDWSVD  346 (685)
Q Consensus       273 ~~~~~~~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~-~~~~CP~--c~~~l~~~~l~~n~~l~~~i~~~~~~  346 (685)
                      .-.....+|.||||+++|.|||+. .|||+||+.||.+||.. +...||.  |++.+...++.||..|+++++.|..+
T Consensus       174 ~v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r  251 (267)
T 3htk_C          174 QIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK  251 (267)
T ss_dssp             CCCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred             eecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence            122567889999999999999985 99999999999999986 4578999  99999999999999999999999765

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.72  E-value=4.1e-18  Score=140.92  Aligned_cols=74  Identities=54%  Similarity=0.939  Sum_probs=70.8

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcCc
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGV  349 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~  349 (685)
                      .++++|.||||+++|.+||+++|||+||+.||.+|+..++.+||.|++.+...++.||..++++|+.|.++|++
T Consensus         4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~   77 (78)
T 1t1h_A            4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI   77 (78)
T ss_dssp             CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred             CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence            67889999999999999999999999999999999987788999999999988999999999999999999986

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.68  E-value=4.7e-16  Score=160.94  Aligned_cols=78  Identities=29%  Similarity=0.444  Sum_probs=72.6

Q ss_pred             CCCCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcCccc
Q 039015          274 GGLTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSI  351 (685)
Q Consensus       274 ~~~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~~~  351 (685)
                      ...+|++|.||||+++|.|||+++||||||+.||.+|+..++.+||.|+.+++..+++||..|+++|+.|+..|++.+
T Consensus       202 ~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~~  279 (281)
T 2c2l_A          202 KRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVE  279 (281)
T ss_dssp             CCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCSS
T ss_pred             CCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCCC
Confidence            347899999999999999999999999999999999999766679999999998899999999999999999998754

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=1.4e-16  Score=136.33  Aligned_cols=74  Identities=28%  Similarity=0.583  Sum_probs=65.7

Q ss_pred             CCCCCccCcCccccCCCceecc-CcccccHHHHHHHHHcC-----CCCCCC--CCcc-ccCCCCcccHHHHhhHHHHHHh
Q 039015          276 LTPDDFTCPISLEIMKDPVTLS-TGHTYDRASILKWFRAG-----NSTCPK--TGER-LQSKELLVNLVLKRIIQDWSVD  346 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~-cghtfcr~ci~~~~~~~-----~~~CP~--c~~~-l~~~~l~~n~~l~~~i~~~~~~  346 (685)
                      ..+++|.||||+++|.|||+++ |||+||+.||.+||..+     ..+||.  |+.. +...+++||..|+++|..|+..
T Consensus         3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~   82 (94)
T 2yu4_A            3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK   82 (94)
T ss_dssp             SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred             CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence            3467899999999999999996 99999999999999863     469999  6655 8888999999999999999988


Q ss_pred             cCc
Q 039015          347 NGV  349 (685)
Q Consensus       347 ~~~  349 (685)
                      ++.
T Consensus        83 ~~r   85 (94)
T 2yu4_A           83 RHR   85 (94)
T ss_dssp             CCS
T ss_pred             hcc
Confidence            774

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.56  E-value=5.3e-15  Score=126.25  Aligned_cols=74  Identities=24%  Similarity=0.496  Sum_probs=67.4

Q ss_pred             CCCCCccCcCccccCCCceecc-CcccccHHHHHHHHHc-CCCCCCCCCccc-cCCCCcccHHHHhhHHHHHHhcCc
Q 039015          276 LTPDDFTCPISLEIMKDPVTLS-TGHTYDRASILKWFRA-GNSTCPKTGERL-QSKELLVNLVLKRIIQDWSVDNGV  349 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~-cghtfcr~ci~~~~~~-~~~~CP~c~~~l-~~~~l~~n~~l~~~i~~~~~~~~~  349 (685)
                      .+++++.||||+++|.+||+++ |||+||+.||..|+.. +...||.|+..+ ....+.+|..++++++.|...++.
T Consensus         9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~   85 (92)
T 3ztg_A            9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGY   85 (92)
T ss_dssp             CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTC
T ss_pred             cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhH
Confidence            6789999999999999999999 9999999999999975 457999999997 566899999999999999988764

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.47  E-value=5.9e-12  Score=140.38  Aligned_cols=278  Identities=13%  Similarity=0.196  Sum_probs=216.2

Q ss_pred             hHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC--CCHHHHHHHHHHhhccccCcch
Q 039015          378 KLLANFISDRLLE-GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS--KDSSTQENAIAALLNLSKHCKS  454 (685)
Q Consensus       378 ~~~i~~Lv~~L~s-~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s--~~~~~~~~A~~aL~nLs~~~~~  454 (685)
                      ..+|+.|...+++ .-.+.|+.|+..|+.+++   ++|..++ ++++|.|+..|..  .|.++...++.+|.++...++.
T Consensus        20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk---~y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~   95 (651)
T 3grl_A           20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSK---KYRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE   95 (651)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTT---TTTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred             hhHHHHHHHHHhhccchhHHHHHHHHHHHHHH---HhHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence            3479999999964 467899999999999986   5666665 5669999999976  6889999999999887543321


Q ss_pred             ------------------hHHHH-hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch--hHHHHhhcCCCcHHHHHHH
Q 039015          455 ------------------KSMVV-ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE--EYRKLIGENPEAIPALVDM  513 (685)
Q Consensus       455 ------------------k~~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~l  513 (685)
                                        .+.+. +.+.|+.|+.+|+.. +..+|.+++..|..|+.+.  .+++.|...+++|+.||.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~-df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l  174 (651)
T 3grl_A           96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF-DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL  174 (651)
T ss_dssp             ------------CHHHHHHHHHHHSTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred             ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc-cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence                              12232 578999999999988 9999999999999998765  3788888768999999999


Q ss_pred             hccCCHHHHHHHHHHHHHhcCCCCcHHHHHh-cCChHHHHHHhccCC---ChhHHHHHHHHHHHHhcC-hhcHHHHHhcC
Q 039015          514 VRDGTDRSKKNALVAIFGLLMHSGNHWRFLA-AGAVPLLLNLLTSSD---SEELITDSLAVLATLAEK-LDGTIAILHHG  588 (685)
Q Consensus       514 L~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~-~G~v~~Lv~lL~~~~---~~~~~~~al~~L~~La~~-~~~~~~i~~~g  588 (685)
                      |.+.....+..|+..|.+|+.+..+.++++. .|+++.|++++....   ...+...|+.+|.||... +.++..+.+.|
T Consensus       175 L~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~  254 (651)
T 3grl_A          175 LADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS  254 (651)
T ss_dssp             GGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence            9998899999999999999998887777776 599999999996432   346789999999999885 66889999999


Q ss_pred             ChHHHHHHhhcCCC-----hhHHHH---HHHHHHHHhccCc-----HHHHHHHHhcCCcHHHHHHHHhcC--ChHHHHHH
Q 039015          589 ALDMIMKILDSCTS-----RAGKEY---CVSLLLALCINGG-----ANVVALLVKSPSLMGSLYSLLSQG--SSRASKKA  653 (685)
Q Consensus       589 ~v~~Lv~lL~~~~s-----~~~~e~---a~~~L~~L~~~~~-----~~~~~~l~~~~g~i~~L~~Ll~~g--~~~~k~~A  653 (685)
                      .++.|..++..+..     +....+   ++.++..|+..++     ...+..+.+ .|+++.|+.++...  ...++..|
T Consensus       255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~-~g~l~~Ll~ll~~~~~p~~i~~~A  333 (651)
T 3grl_A          255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQ-CGLLQQLCTILMATGVPADILTET  333 (651)
T ss_dssp             CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH-TTHHHHHHHHHTCSSCCHHHHHHH
T ss_pred             CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH-CCCHHHHHHHHccCCCCHHHHHHH
Confidence            99999998875411     112233   6667777776543     234555555 89999999998765  45566555


Q ss_pred             HHHHHHHH
Q 039015          654 SALIRILH  661 (685)
Q Consensus       654 ~~lL~~l~  661 (685)
                      ...+..+.
T Consensus       334 l~tla~~i  341 (651)
T 3grl_A          334 INTVSEVI  341 (651)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555443

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.45  E-value=3.3e-14  Score=128.42  Aligned_cols=69  Identities=22%  Similarity=0.336  Sum_probs=62.9

Q ss_pred             CCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccC-CCCcccHHHHhhHHHHHH
Q 039015          277 TPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQS-KELLVNLVLKRIIQDWSV  345 (685)
Q Consensus       277 ~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~-~~l~~n~~l~~~i~~~~~  345 (685)
                      +++++.||||+++|.+||+++|||+||+.||..|+..+...||.|+..+.. ..+.+|..++++++.|..
T Consensus        49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p  118 (124)
T 3fl2_A           49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP  118 (124)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHST
T ss_pred             CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcc
Confidence            456799999999999999999999999999999999767799999999987 689999999999988854

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.41  E-value=1.1e-13  Score=128.96  Aligned_cols=69  Identities=20%  Similarity=0.353  Sum_probs=63.4

Q ss_pred             CCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCC-CCcccHHHHhhHHHHHH
Q 039015          277 TPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSK-ELLVNLVLKRIIQDWSV  345 (685)
Q Consensus       277 ~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~-~l~~n~~l~~~i~~~~~  345 (685)
                      +++++.||||+++|.+||+++|||+||+.||..|+..+...||.|+..+... .+.+|..++++++.|..
T Consensus        75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p  144 (150)
T 1z6u_A           75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP  144 (150)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred             CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence            4567999999999999999999999999999999998677999999999887 89999999999998853

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=99.39  E-value=1.1e-13  Score=107.68  Aligned_cols=54  Identities=19%  Similarity=0.382  Sum_probs=49.8

Q ss_pred             CccCcCccccCCCceec-cCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccH
Q 039015          280 DFTCPISLEIMKDPVTL-STGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNL  334 (685)
Q Consensus       280 ~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~  334 (685)
                      .|.||||+++|.|||++ +|||+|||.||++|+.. +.+||.|++++...+++||+
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~   57 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIV   57 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECC
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECc
Confidence            58999999999999999 99999999999999987 56799999999999999875

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=99.38  E-value=8.1e-13  Score=152.39  Aligned_cols=73  Identities=29%  Similarity=0.377  Sum_probs=69.4

Q ss_pred             CCCCCccCcCccccCCCceeccCc-ccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcCc
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTG-HTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGV  349 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cg-htfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~  349 (685)
                      ++|++|.|||++++|.|||++++| +||+|.+|++|+.. +.+||.++++++..+++||+.|++.|++|+.+++.
T Consensus       887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~  960 (968)
T 3m62_A          887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE  960 (968)
T ss_dssp             CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred             CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence            789999999999999999999998 69999999999987 78999999999999999999999999999999764

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.37  E-value=3.2e-13  Score=116.78  Aligned_cols=71  Identities=18%  Similarity=0.376  Sum_probs=64.8

Q ss_pred             CCCCccCcCccccCCCceec-cCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcC
Q 039015          277 TPDDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNG  348 (685)
Q Consensus       277 ~~~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~  348 (685)
                      +++++.||||++.+.+|+++ +|||+||+.||.+|+.. ..+||.|+..+...++.+|..++++++.|.+...
T Consensus        19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~   90 (99)
T 2y43_A           19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFARN   90 (99)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHHH
Confidence            45679999999999999998 89999999999999986 6899999999988889999999999999977643

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.34  E-value=2.8e-13  Score=117.34  Aligned_cols=73  Identities=19%  Similarity=0.290  Sum_probs=64.2

Q ss_pred             CCCCCccCcCccccCCCcee-ccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcC
Q 039015          276 LTPDDFTCPISLEIMKDPVT-LSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNG  348 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~-~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~  348 (685)
                      .+.+++.||||++++.+|++ ++|||+||+.||.+|+..+...||.|+..+...++.+|..+.++++...+...
T Consensus        18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~~   91 (100)
T 3lrq_A           18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQL   91 (100)
T ss_dssp             HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHCC
T ss_pred             cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHHH
Confidence            34567999999999999999 89999999999999999855899999999998899999999888877755543

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.32  E-value=7e-13  Score=116.54  Aligned_cols=68  Identities=13%  Similarity=0.319  Sum_probs=61.2

Q ss_pred             CCCCCccCcCccccCCCceec-cCcccccHHHHHHHHHcCCCCCCCCCccccCC----CCcccHHHHhhHHHHH
Q 039015          276 LTPDDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRAGNSTCPKTGERLQSK----ELLVNLVLKRIIQDWS  344 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~----~l~~n~~l~~~i~~~~  344 (685)
                      .+++++.||||++.+.+|+++ +|||+||+.||..|+.. ...||.|+..+...    .+.+|..+.+++..|.
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~   83 (108)
T 2ckl_A           11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV   83 (108)
T ss_dssp             HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred             ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence            356789999999999999998 99999999999999987 58999999998865    6889999999998874

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.31  E-value=1.8e-12  Score=119.14  Aligned_cols=64  Identities=27%  Similarity=0.514  Sum_probs=53.1

Q ss_pred             CCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHH
Q 039015          278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWS  344 (685)
Q Consensus       278 ~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~  344 (685)
                      .+++.||||++.|.+||+++|||+||..||.+|+.. +.+||.|++++...  .+|..+...+..+.
T Consensus        51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~  114 (138)
T 4ayc_A           51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--TYSLVLDNCINKMV  114 (138)
T ss_dssp             HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred             cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence            346899999999999999999999999999999987 78999999998654  34566666665554

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.31  E-value=3.9e-13  Score=112.55  Aligned_cols=65  Identities=31%  Similarity=0.599  Sum_probs=58.4

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHc-----CCCCCCCCCccccCCCCcccHHHHhhH
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRA-----GNSTCPKTGERLQSKELLVNLVLKRII  340 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~-----~~~~CP~c~~~l~~~~l~~n~~l~~~i  340 (685)
                      .+.+++.||||++.+.+|++++|||+||+.||..|+..     +...||.|+..+...++.+|..+++++
T Consensus        15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v   84 (85)
T 2ecw_A           15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV   84 (85)
T ss_dssp             CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred             hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence            67889999999999999999999999999999999987     367999999999988899987776554

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.31  E-value=8.4e-14  Score=115.10  Aligned_cols=65  Identities=32%  Similarity=0.578  Sum_probs=58.0

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcC------CCCCCCCCccccCCCCcccHHHHhhH
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAG------NSTCPKTGERLQSKELLVNLVLKRII  340 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~------~~~CP~c~~~l~~~~l~~n~~l~~~i  340 (685)
                      .+++++.||||++.+.+|++++|||+||+.||.+|+...      ...||.|+..+...++.+|..+++++
T Consensus         8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv   78 (79)
T 2egp_A            8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANIV   78 (79)
T ss_dssp             CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCCC
T ss_pred             hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHhh
Confidence            577899999999999999999999999999999999863      67999999999888888988776554

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=1.5e-12  Score=108.17  Aligned_cols=61  Identities=20%  Similarity=0.245  Sum_probs=53.7

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHh
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKR  338 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~  338 (685)
                      ...+.+.||||++.+.+|++++|||+||+.||.+|+.. ...||.|++.+. ..+.+|..+..
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~   71 (81)
T 2csy_A           11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMA   71 (81)
T ss_dssp             CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHH
T ss_pred             cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHH
Confidence            55678999999999999999999999999999999987 789999999997 57888855543

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.29  E-value=1.3e-12  Score=116.70  Aligned_cols=68  Identities=28%  Similarity=0.506  Sum_probs=62.7

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHH
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDW  343 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~  343 (685)
                      .+++++.||||++.+.+|++++|||+||+.||.+|+..+..+||.|+..+....+.+|..+.+.|..+
T Consensus        14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l   81 (118)
T 3hct_A           14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL   81 (118)
T ss_dssp             CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred             CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence            67889999999999999999999999999999999987666999999999988899999998888765

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=5.8e-13  Score=111.48  Aligned_cols=65  Identities=28%  Similarity=0.580  Sum_probs=58.4

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHc-----CCCCCCCCCccccCCCCcccHHHHhhH
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRA-----GNSTCPKTGERLQSKELLVNLVLKRII  340 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~-----~~~~CP~c~~~l~~~~l~~n~~l~~~i  340 (685)
                      .+.+++.||||++.+.+|++++|||+||+.||..|+..     +...||.|+..+...++.+|..+++++
T Consensus        15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v   84 (85)
T 2ecv_A           15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIV   84 (85)
T ss_dssp             CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCCC
T ss_pred             HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHhh
Confidence            67889999999999999999999999999999999976     477999999999988899988776554

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.28  E-value=4.1e-10  Score=125.60  Aligned_cols=280  Identities=13%  Similarity=0.112  Sum_probs=205.3

Q ss_pred             HHHHHHHHHhcC--CCHHHHHHHHHHHHHHhhcCCc-----------------hhh-HHHhhCCHHHHHHhhcCCCHHHH
Q 039015          379 LLANFISDRLLE--GTSEEKNKVAYEVRLLTKSSIF-----------------NRS-CLVEVGCIPSLLKLLSSKDSSTQ  438 (685)
Q Consensus       379 ~~i~~Lv~~L~s--~~~~~~~~a~~~L~~La~~~~~-----------------~r~-~i~~~G~ip~Lv~lL~s~~~~~~  438 (685)
                      ..++.|+..|+.  .|.+....++..|.++...+.+                 +.. .+.+.+.|+.|+.+|.+.+..++
T Consensus        60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR  139 (651)
T 3grl_A           60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVR  139 (651)
T ss_dssp             HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHH
T ss_pred             hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHH
Confidence            347788888865  4777888889998776543332                 111 23356889999999999999999


Q ss_pred             HHHHHHhhccccCcc--hhHHHH-hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhc
Q 039015          439 ENAIAALLNLSKHCK--SKSMVV-ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR  515 (685)
Q Consensus       439 ~~A~~aL~nLs~~~~--~k~~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~  515 (685)
                      .+++..|..|+.+..  .++.|. ..++++.|+.+|+.. ...+|-.|+.+|.+|+.++....++..-.|+++.|+.+++
T Consensus       140 ~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~-rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~  218 (651)
T 3grl_A          140 WPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS-REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT  218 (651)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc-hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence            999999999987664  488888 569999999999988 8899999999999999877544444443799999999997


Q ss_pred             cCC----HHHHHHHHHHHHHhcCCCC-cHHHHHhcCChHHHHHHhccCCCh-----hHHHH---HHHHHHHHhcC-----
Q 039015          516 DGT----DRSKKNALVAIFGLLMHSG-NHWRFLAAGAVPLLLNLLTSSDSE-----ELITD---SLAVLATLAEK-----  577 (685)
Q Consensus       516 ~~~----~~~~~~A~~aL~nLs~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~-----~~~~~---al~~L~~La~~-----  577 (685)
                      .+.    ..+..+++.+|.||..+.. |+..+.+.|.++.|..+|..+...     ....+   ++.++..|...     
T Consensus       219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~  298 (651)
T 3grl_A          219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG  298 (651)
T ss_dssp             HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred             hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            643    3678899999999998764 999999999999999999533221     12333   66677777553     


Q ss_pred             --hhcHHHHHhcCChHHHHHHhhc-CCChhHHHHHHHHHHHHhccCcHHHHHHHHhc--------CCcHHHHHHHHhcC-
Q 039015          578 --LDGTIAILHHGALDMIMKILDS-CTSRAGKEYCVSLLLALCINGGANVVALLVKS--------PSLMGSLYSLLSQG-  645 (685)
Q Consensus       578 --~~~~~~i~~~g~v~~Lv~lL~~-~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~--------~g~i~~L~~Ll~~g-  645 (685)
                        ..++.++.+.|+++.|++++.. +....++..|+.++..++.+++ ..+..+.+.        +.++..|+.++.+. 
T Consensus       299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~-~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~  377 (651)
T 3grl_A          299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQ-VNQDYFASVNAPSNPPRPAIVVLLMSMVNERQ  377 (651)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCH-HHHHHHHHCEESSSSCEEHHHHHHHHHTCTTS
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCH-HHHHHHhhccCCCCCCcChHHHHHHHHhcccc
Confidence              2467789999999999996654 3356788999999999998773 344444431        12444455545443 


Q ss_pred             ChHHHHHHHHHHHHH
Q 039015          646 SSRASKKASALIRIL  660 (685)
Q Consensus       646 ~~~~k~~A~~lL~~l  660 (685)
                      ....|-.|...++.+
T Consensus       378 ~~~lR~Aa~~cl~ay  392 (651)
T 3grl_A          378 PFVLRCAVLYCFQCF  392 (651)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHH
Confidence            345565555555544

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.28  E-value=6.4e-13  Score=118.20  Aligned_cols=69  Identities=30%  Similarity=0.453  Sum_probs=61.8

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccC-------CCCcccHHHHhhHHHHH
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQS-------KELLVNLVLKRIIQDWS  344 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~-------~~l~~n~~l~~~i~~~~  344 (685)
                      ...+++.||||++++.+|++++|||+||+.||.+|+..+...||.|++.+..       ..+.+|..+..++..|.
T Consensus        11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~   86 (115)
T 3l11_A           11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY   86 (115)
T ss_dssp             CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred             CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence            5567899999999999999999999999999999998778899999999863       56778999999998875

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.27  E-value=1.5e-12  Score=123.53  Aligned_cols=71  Identities=24%  Similarity=0.464  Sum_probs=62.5

Q ss_pred             CCCCCccCcCccccCCCceec-cCcccccHHHHHHHHHcCCCCCCCCCccccC-CCCcccHHHHhhHHHHHHh
Q 039015          276 LTPDDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRAGNSTCPKTGERLQS-KELLVNLVLKRIIQDWSVD  346 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~-~~l~~n~~l~~~i~~~~~~  346 (685)
                      .+.+++.||||++.+.+|+++ +|||+||+.||.+|+..+...||.|+..+.. ..+.+|..+.++|..|...
T Consensus        50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~  122 (165)
T 2ckl_B           50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS  122 (165)
T ss_dssp             CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred             hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence            456789999999999999988 9999999999999999878899999999853 4689999999999988443

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.27  E-value=8.3e-13  Score=117.81  Aligned_cols=69  Identities=20%  Similarity=0.294  Sum_probs=62.8

Q ss_pred             CCCCccCcCccccCCCceec-cCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcC
Q 039015          277 TPDDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNG  348 (685)
Q Consensus       277 ~~~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~  348 (685)
                      +.+++.||||+++|.+||++ +|||+||+.||..|+.   ..||.|+..+...++.+|..+.+++..+.....
T Consensus        19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~~   88 (117)
T 1jm7_B           19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLRN   88 (117)
T ss_dssp             HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHHH
T ss_pred             chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHHH
Confidence            45679999999999999999 9999999999999987   689999999988899999999999998876644

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=6.3e-12  Score=101.80  Aligned_cols=57  Identities=21%  Similarity=0.359  Sum_probs=51.9

Q ss_pred             CCCCCccCcCccccCCCceec-cCcccccHHHHHHHHHcCCCCCCCCCccccCCCCccc
Q 039015          276 LTPDDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVN  333 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n  333 (685)
                      .+++++.||||++.+.+|+++ +|||+||+.||.+|+.. ...||.|++.+...++.+|
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   68 (72)
T 2djb_A           11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG   68 (72)
T ss_dssp             CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred             hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence            678899999999999999997 99999999999999987 7899999999987776655

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=4.6e-12  Score=100.71  Aligned_cols=54  Identities=13%  Similarity=0.358  Sum_probs=49.3

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCC
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKE  329 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~  329 (685)
                      .+++++.||||++.+.+|++++|||+||+.||.+|+..+...||.|++.+...+
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   64 (66)
T 2ecy_A           11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK   64 (66)
T ss_dssp             SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred             cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence            678899999999999999999999999999999999766789999999987654

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.24  E-value=6.5e-12  Score=102.26  Aligned_cols=58  Identities=28%  Similarity=0.435  Sum_probs=49.2

Q ss_pred             CCCCCccCcCccccCCCceecc-CcccccHHHHHHHHHc-CCCCCCCCCccccC-CCCccc
Q 039015          276 LTPDDFTCPISLEIMKDPVTLS-TGHTYDRASILKWFRA-GNSTCPKTGERLQS-KELLVN  333 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~-cghtfcr~ci~~~~~~-~~~~CP~c~~~l~~-~~l~~n  333 (685)
                      .+++++.||||++.|.+||+++ |||+||+.||.+|+.. +...||.|++.+.. ..+.+|
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n   71 (74)
T 2yur_A           11 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP   71 (74)
T ss_dssp             CSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred             cCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence            6788999999999999999999 9999999999999985 34799999997543 334444

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.22  E-value=3.4e-12  Score=112.83  Aligned_cols=69  Identities=22%  Similarity=0.464  Sum_probs=59.1

Q ss_pred             CCCccCcCccccCCCceeccCcccccHHHHHHHHHcC--CCCCCCCCccccCCCCcccHHHHhhHHHHHHh
Q 039015          278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAG--NSTCPKTGERLQSKELLVNLVLKRIIQDWSVD  346 (685)
Q Consensus       278 ~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~--~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~  346 (685)
                      .+.+.||||++.+.+|++++|||+||+.||.+|+..+  ...||.|+..+...++.+|..+.++++.+...
T Consensus        19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~   89 (112)
T 1jm7_A           19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKI   89 (112)
T ss_dssp             HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHH
T ss_pred             cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHH
Confidence            3468999999999999999999999999999999853  46899999999988888887777777666543

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.19  E-value=6.3e-10  Score=109.21  Aligned_cols=187  Identities=16%  Similarity=0.154  Sum_probs=156.9

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV  458 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i  458 (685)
                      ..++.|+..|.++++.+|..|+..|..+..           .+++|.|+.+|.+++..++..|+.+|..+.         
T Consensus        19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~---------   78 (211)
T 3ltm_A           19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG---------   78 (211)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC---------
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC---------
Confidence            358899999999999999999999887642           367999999999999999999999998865         


Q ss_pred             HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 039015          459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGN  538 (685)
Q Consensus       459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n  538 (685)
                       ..++++.|+..|.+. ++.+|..|+.+|..+..           .++++.|+.+|.++++.++..|+.+|.++..    
T Consensus        79 -~~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  141 (211)
T 3ltm_A           79 -DERAVEPLIKALKDE-DGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----  141 (211)
T ss_dssp             -CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred             -CHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Confidence             356899999999988 99999999999988742           4689999999999999999999999999842    


Q ss_pred             HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 039015          539 HWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCI  618 (685)
Q Consensus       539 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~  618 (685)
                            ..+++.|+.+| .+++..++..|+.+|..+..          ...++.|..+++++ ++.++..|+.+|..+..
T Consensus       142 ------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~~  203 (211)
T 3ltm_A          142 ------ERAVEPLIKAL-KDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETG-TGFARKVAVNYLETHKS  203 (211)
T ss_dssp             ------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC---
T ss_pred             ------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHhcCC
Confidence                  35789999999 67889999999999999843          22467788888887 99999999999998887


Q ss_pred             cC
Q 039015          619 NG  620 (685)
Q Consensus       619 ~~  620 (685)
                      ..
T Consensus       204 ~~  205 (211)
T 3ltm_A          204 FN  205 (211)
T ss_dssp             --
T ss_pred             CC
Confidence            64

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=1.3e-11  Score=100.11  Aligned_cols=55  Identities=25%  Similarity=0.546  Sum_probs=49.1

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHc--CCCCCCCCCccccCCCC
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRA--GNSTCPKTGERLQSKEL  330 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~--~~~~CP~c~~~l~~~~l  330 (685)
                      .+++++.||||++.+.+|++++|||+||+.||.+|+..  +...||.|++.+...++
T Consensus        16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~   72 (73)
T 2ysl_A           16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI   72 (73)
T ss_dssp             CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred             hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence            67889999999999999999999999999999999973  46799999999876543

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.18  E-value=1.2e-11  Score=97.99  Aligned_cols=55  Identities=27%  Similarity=0.515  Sum_probs=49.1

Q ss_pred             CCccCcCccc-cCCCc----eeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCccc
Q 039015          279 DDFTCPISLE-IMKDP----VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVN  333 (685)
Q Consensus       279 ~~~~CpIc~~-~m~dP----v~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n  333 (685)
                      +++.||||++ .+.+|    ++++|||+||+.||.+|+..+...||.|+..+...++.++
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~   61 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ   61 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence            4689999999 99999    5679999999999999998777899999999988777665

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.17  E-value=9.2e-10  Score=108.03  Aligned_cols=191  Identities=17%  Similarity=0.176  Sum_probs=157.4

Q ss_pred             hCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHH
Q 039015          420 VGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKL  499 (685)
Q Consensus       420 ~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~  499 (685)
                      .+.++.|+.+|.+++..++..|+.+|..+..          .++++.|+..|.++ +..+|..|+.+|..+.        
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~--------   78 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDE-DAWVRRAAADALGQIG--------   78 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS-CHHHHHHHHHHHHHHC--------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCC-CHHHHHHHHHHHHhhC--------
Confidence            5679999999999999999999999987642          57899999999988 9999999999998764        


Q ss_pred             hhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChh
Q 039015          500 IGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLD  579 (685)
Q Consensus       500 i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~  579 (685)
                        . .++++.|+.+|.++++.++..|+.+|.++..          .++++.|+.+| .+++..++..|+.+|..+..   
T Consensus        79 --~-~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~---  141 (211)
T 3ltm_A           79 --D-ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIGD---  141 (211)
T ss_dssp             --C-GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC---
T ss_pred             --C-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC---
Confidence              2 5689999999999999999999999998842          35789999999 77889999999999998843   


Q ss_pred             cHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 039015          580 GTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRI  659 (685)
Q Consensus       580 ~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~  659 (685)
                             ...++.|+.++++. ++.++..|+.+|..+..             ..+++.|..++.++++.++..|...|..
T Consensus       142 -------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~-------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~  200 (211)
T 3ltm_A          142 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG-------------ERVRAAMEKLAETGTGFARKVAVNYLET  200 (211)
T ss_dssp             -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS-------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred             -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-------------hhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                   23588899999887 99999999999988843             1236678888999999999999999998


Q ss_pred             HHHhhccc
Q 039015          660 LHEFYERH  667 (685)
Q Consensus       660 l~~~~~~~  667 (685)
                      +.......
T Consensus       201 ~~~~~~~~  208 (211)
T 3ltm_A          201 HKSFNHHH  208 (211)
T ss_dssp             --------
T ss_pred             cCCCCCCC
Confidence            87765443

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.16  E-value=1.3e-09  Score=111.89  Aligned_cols=225  Identities=12%  Similarity=0.055  Sum_probs=163.6

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHH
Q 039015          378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSM  457 (685)
Q Consensus       378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~  457 (685)
                      ...++.|+..|.++++.+|..|++.|..+..           .++++.|+.+|.++++.++..|+.+|..+...+..-. 
T Consensus        22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~-   89 (280)
T 1oyz_A           22 KLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED-   89 (280)
T ss_dssp             TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH-
T ss_pred             HhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch-
Confidence            3468999999999999999999999988751           3568999999999999999999999988864432211 


Q ss_pred             HHhcCcHHHHHH-HhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 039015          458 VVESGGLDFIVD-MVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS  536 (685)
Q Consensus       458 i~~~g~i~~Lv~-lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~  536 (685)
                          ..++.|.. +++.. +..+|..|+.+|.++...+.    ... ..+++.|+.++.++++.++..|+.+|.++..  
T Consensus        90 ----~l~~~L~~~~~~d~-~~~vr~~a~~aL~~l~~~~~----~~~-~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--  157 (280)
T 1oyz_A           90 ----NVFNILNNMALNDK-SACVRATAIESTAQRCKKNP----IYS-PKIVEQSQITAFDKSTNVRRATAFAISVIND--  157 (280)
T ss_dssp             ----HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHCG----GGH-HHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred             ----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCC----ccc-HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--
Confidence                12334442 34556 89999999999998863221    011 3468899999999999999999999988743  


Q ss_pred             CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHH
Q 039015          537 GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLAL  616 (685)
Q Consensus       537 ~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L  616 (685)
                              .++++.|+.+| .+++..++..|+.+|..+....        ...++.|+.++++. ++.++..|+.+|..+
T Consensus       158 --------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~-~~~vR~~A~~aL~~~  219 (280)
T 1oyz_A          158 --------KATIPLLINLL-KDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDK-NEEVRIEAIIGLSYR  219 (280)
T ss_dssp             ---------CCHHHHHHHH-TCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCS-CHHHHHHHHHHHHHT
T ss_pred             --------HHHHHHHHHHH-cCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCC-CHHHHHHHHHHHHHh
Confidence                    35899999999 6778889999999998874321        12367788888877 889999999998887


Q ss_pred             hccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 039015          617 CINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRI  659 (685)
Q Consensus       617 ~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~  659 (685)
                      ..             ..+++.|..++.+++  .+..|...|..
T Consensus       220 ~~-------------~~~~~~L~~~l~d~~--vr~~a~~aL~~  247 (280)
T 1oyz_A          220 KD-------------KRVLSVLCDELKKNT--VYDDIIEAAGE  247 (280)
T ss_dssp             TC-------------GGGHHHHHHHHTSSS--CCHHHHHHHHH
T ss_pred             CC-------------HhhHHHHHHHhcCcc--HHHHHHHHHHh
Confidence            52             233556666666543  34444444433

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=2.6e-11  Score=95.35  Aligned_cols=46  Identities=30%  Similarity=0.611  Sum_probs=42.5

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHc--CCCCCCCC
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRA--GNSTCPKT  321 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~--~~~~CP~c  321 (685)
                      .+++++.||||++.+.+|++++|||+||+.||.+|+..  +...||.|
T Consensus        16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            67889999999999999999999999999999999985  46789987

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.14  E-value=1.6e-11  Score=98.96  Aligned_cols=57  Identities=18%  Similarity=0.405  Sum_probs=51.3

Q ss_pred             CCCCCccCcCccccCCCc-------eeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCccc
Q 039015          276 LTPDDFTCPISLEIMKDP-------VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVN  333 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dP-------v~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n  333 (685)
                      ...+++.||||++.+.+|       ++++|||+||+.||.+|+.. ..+||.|+..+...++.++
T Consensus         6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   69 (71)
T 3ng2_A            6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI   69 (71)
T ss_dssp             CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCC
T ss_pred             CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeec
Confidence            456789999999999998       88899999999999999987 6799999999988777765

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.14  E-value=2e-11  Score=116.41  Aligned_cols=68  Identities=28%  Similarity=0.506  Sum_probs=62.3

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHH
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDW  343 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~  343 (685)
                      .++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+..+...++.+|..+.+.|..+
T Consensus        14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l   81 (170)
T 3hcs_A           14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL   81 (170)
T ss_dssp             CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred             CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence            67889999999999999999999999999999999987667999999999988899999888887654

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.13  E-value=6.9e-12  Score=115.34  Aligned_cols=67  Identities=13%  Similarity=0.300  Sum_probs=57.1

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCcccc---------CCCCcccHHHHhhHHH
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQ---------SKELLVNLVLKRIIQD  342 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~---------~~~l~~n~~l~~~i~~  342 (685)
                      .++++|.||||++++.+||+++|||+||+.||.+|+..+...||.|+..+.         ...+.+|..+++.|..
T Consensus        27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~  102 (141)
T 3knv_A           27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES  102 (141)
T ss_dssp             GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred             cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence            678899999999999999999999999999999999886779999998653         2245588888777753

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.13  E-value=2.7e-11  Score=107.81  Aligned_cols=68  Identities=24%  Similarity=0.340  Sum_probs=57.0

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCc-ccHHHHhhHHHH
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELL-VNLVLKRIIQDW  343 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~-~n~~l~~~i~~~  343 (685)
                      .+++++.||||++.+.+|++++|||+||+.||.+|+..+..+||.|+..+...++. ++..+.+++..+
T Consensus        19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l   87 (116)
T 1rmd_A           19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSL   87 (116)
T ss_dssp             HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred             hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence            34567999999999999999999999999999999997678999999999877654 456666666443

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.13  E-value=2.1e-09  Score=104.62  Aligned_cols=184  Identities=16%  Similarity=0.170  Sum_probs=156.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV  458 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i  458 (685)
                      ...+.+++.|.++++.+|..|+..|..+..           .++++.|+.+|.++++.++..|+.+|..+.         
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~---------   73 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG---------   73 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC---------
Confidence            357889999999999999999999887642           357899999999999999999999998764         


Q ss_pred             HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 039015          459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGN  538 (685)
Q Consensus       459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n  538 (685)
                       ..++++.|+..|.+. ++.+|..|+.+|..+..           .++++.|+.+|.++++.++..|+.+|.++.     
T Consensus        74 -~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-----  135 (201)
T 3ltj_A           74 -DERAVEPLIKALKDE-DGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG-----  135 (201)
T ss_dssp             -CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT-----
T ss_pred             -CHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----
Confidence             246899999999988 99999999999988632           458999999999999999999999999884     


Q ss_pred             HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 039015          539 HWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALC  617 (685)
Q Consensus       539 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~  617 (685)
                           ..++++.|+.+| .+++..++..|+.+|..+..          ..+++.|..++++. ++.++..|+.+|..+-
T Consensus       136 -----~~~~~~~L~~~l-~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          136 -----DERAVEPLIKAL-KDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETG-TGFARKVAVNYLETHK  197 (201)
T ss_dssp             -----CGGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHHCC
T ss_pred             -----CHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence                 246889999999 67788999999999998832          12467888888887 9999999999987764

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.09  E-value=3.5e-09  Score=103.01  Aligned_cols=186  Identities=17%  Similarity=0.164  Sum_probs=156.4

Q ss_pred             hhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHH
Q 039015          419 EVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRK  498 (685)
Q Consensus       419 ~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~  498 (685)
                      ..+..+.++.+|.++++.++..|+.+|..+..          .++++.|+..|.++ +..+|..|+.+|..+.       
T Consensus        12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~-~~~vr~~a~~~L~~~~-------   73 (201)
T 3ltj_A           12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDE-DAWVRRAAADALGQIG-------   73 (201)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC-------
T ss_pred             CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCC-CHHHHHHHHHHHHhhC-------
Confidence            34668899999999999999999999987652          47899999999988 9999999999998763       


Q ss_pred             HhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCh
Q 039015          499 LIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKL  578 (685)
Q Consensus       499 ~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~  578 (685)
                         . .++++.|+.+|.++++.++..|+.+|.++..          ..+++.|+.+| .+++..++..|+.+|..+..  
T Consensus        74 ---~-~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~--  136 (201)
T 3ltj_A           74 ---D-ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIGD--  136 (201)
T ss_dssp             ---C-GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHTC--
T ss_pred             ---C-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC--
Confidence               2 4689999999999999999999999998742          35789999999 67889999999999998853  


Q ss_pred             hcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHH
Q 039015          579 DGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIR  658 (685)
Q Consensus       579 ~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~  658 (685)
                              .+.++.|+.++.+. ++.++..|+.+|..+..   +          .+++.|..++.++++.++..|...|.
T Consensus       137 --------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~~---~----------~~~~~L~~~l~d~~~~vr~~A~~aL~  194 (201)
T 3ltj_A          137 --------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG---E----------RVRAAMEKLAETGTGFARKVAVNYLE  194 (201)
T ss_dssp             --------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS---H----------HHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc---h----------hHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence                    34688899999887 99999999999998832   2          23667888889999999999988887


Q ss_pred             HHH
Q 039015          659 ILH  661 (685)
Q Consensus       659 ~l~  661 (685)
                      .+.
T Consensus       195 ~l~  197 (201)
T 3ltj_A          195 THK  197 (201)
T ss_dssp             HCC
T ss_pred             HHH
Confidence            654

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=7.1e-11  Score=95.26  Aligned_cols=52  Identities=15%  Similarity=0.218  Sum_probs=46.8

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCC
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSK  328 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~  328 (685)
                      ...+++.|+||++.+.+|++++|||+||+.||.+|+.. ..+||.|++.+...
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~   62 (71)
T 2d8t_A           11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPED   62 (71)
T ss_dssp             SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHH
T ss_pred             cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHh
Confidence            45678999999999999999999999999999999987 68999999988643

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=2e-10  Score=96.67  Aligned_cols=53  Identities=25%  Similarity=0.453  Sum_probs=47.8

Q ss_pred             CCCCCccCcCccccCCC----ceeccCcccccHHHHHHHHHcC--CCCCCCCCccccCC
Q 039015          276 LTPDDFTCPISLEIMKD----PVTLSTGHTYDRASILKWFRAG--NSTCPKTGERLQSK  328 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~d----Pv~~~cghtfcr~ci~~~~~~~--~~~CP~c~~~l~~~  328 (685)
                      .+.+.+.||||++.+.+    |++++|||+||+.||.+|+...  ...||.|++.+...
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            67888999999999999    9999999999999999999873  57999999987654

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=1e-10  Score=90.22  Aligned_cols=46  Identities=28%  Similarity=0.703  Sum_probs=42.1

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHc--CCCCCCCC
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRA--GNSTCPKT  321 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~--~~~~CP~c  321 (685)
                      .+.+++.||||++.+.+|++++|||+||+.||.+|+..  +...||.|
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            56788999999999999999999999999999999864  57899987

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.04  E-value=5.2e-11  Score=93.76  Aligned_cols=54  Identities=19%  Similarity=0.416  Sum_probs=48.4

Q ss_pred             CCccCcCccccCCCc-------eeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCccc
Q 039015          279 DDFTCPISLEIMKDP-------VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVN  333 (685)
Q Consensus       279 ~~~~CpIc~~~m~dP-------v~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n  333 (685)
                      +++.||||++.+.+|       +.++|||+||+.||.+|+.. +.+||.|+..+...++.++
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   62 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI   62 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence            468999999999998       78899999999999999997 7899999999987776654

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=1.5e-10  Score=92.67  Aligned_cols=51  Identities=18%  Similarity=0.471  Sum_probs=46.6

Q ss_pred             CCCCCccCcCccccCCCc-------eeccCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015          276 LTPDDFTCPISLEIMKDP-------VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQS  327 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dP-------v~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~  327 (685)
                      ...+.+.|+||++.+.+|       ++++|||+||..||.+|+.. ..+||.|++.+..
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH   68 (69)
T ss_dssp             CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred             CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence            567889999999999998       88999999999999999997 7899999998764

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.99  E-value=3.1e-10  Score=93.19  Aligned_cols=57  Identities=19%  Similarity=0.445  Sum_probs=49.1

Q ss_pred             CCCCCccCcCccccCCCc---eeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCccc
Q 039015          276 LTPDDFTCPISLEIMKDP---VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVN  333 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dP---v~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n  333 (685)
                      ...+++.|+||++.|.+|   ++++|||.||+.||.+|+.. ..+||.|++.+....+.+|
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   70 (78)
T 2ect_A           11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN   70 (78)
T ss_dssp             TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred             cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence            556789999999999877   44699999999999999986 6899999999987776665

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.97  E-value=4.6e-10  Score=91.87  Aligned_cols=55  Identities=18%  Similarity=0.280  Sum_probs=46.9

Q ss_pred             CCCCCccCcCccccC--CCceecc--CcccccHHHHHHHHHcCCCCCCCCCccccCCCC
Q 039015          276 LTPDDFTCPISLEIM--KDPVTLS--TGHTYDRASILKWFRAGNSTCPKTGERLQSKEL  330 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m--~dPv~~~--cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l  330 (685)
                      ...+++.||||++.+  .|+++.+  |||+||+.|+.+|+..+...||.||+.+....+
T Consensus         7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A            7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred             ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence            567889999999988  4666666  999999999999997778899999999876543

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.92  E-value=1.1e-08  Score=121.91  Aligned_cols=271  Identities=14%  Similarity=0.106  Sum_probs=195.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHH-------hhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLV-------EVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC  452 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~-------~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~  452 (685)
                      .++.|++.+.+++...+..|+..|..+++..+.   .+.       -.+.+|.++.++.+++..++..|+++|.++....
T Consensus       129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~---~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~  205 (852)
T 4fdd_A          129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAE---ILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISR  205 (852)
T ss_dssp             HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTT---HHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHH---HhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence            588899999999999999999999999975432   222       1346888888899999999999999999887654


Q ss_pred             chhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh--HHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHH
Q 039015          453 KSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE--YRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIF  530 (685)
Q Consensus       453 ~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~  530 (685)
                      .....-.-.+.++.+...+..+ +.++|..|+.+|..|+....  ....+   .+.++.++.++.+.++.++..|+.++.
T Consensus       206 ~~~~~~~~~~~l~~l~~~~~d~-~~~vr~~a~~~L~~l~~~~~~~~~~~l---~~l~~~l~~~~~~~~~~vr~~a~e~l~  281 (852)
T 4fdd_A          206 TQALMLHIDSFIENLFALAGDE-EPEVRKNVCRALVMLLEVRMDRLLPHM---HNIVEYMLQRTQDQDENVALEACEFWL  281 (852)
T ss_dssp             CHHHHTSHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHCHHHHGGGH---HHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhCHHHHHHHH---HHHHHHHHHHccCCcHHHHHHHHHHHH
Confidence            3211111246788888888888 89999999999999976432  12222   247888888888888999999999999


Q ss_pred             HhcCCCCcHHHHHh--cCChHHHHHHhc----------cC-----------CChhHHHHHHHHHHHHhcChhcHHHHHhc
Q 039015          531 GLLMHSGNHWRFLA--AGAVPLLLNLLT----------SS-----------DSEELITDSLAVLATLAEKLDGTIAILHH  587 (685)
Q Consensus       531 nLs~~~~n~~~iv~--~G~v~~Lv~lL~----------~~-----------~~~~~~~~al~~L~~La~~~~~~~~i~~~  587 (685)
                      +++.....+..+..  ...+|.|+..+.          .+           .+-.++..|..+|..++....  ..+.. 
T Consensus       282 ~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~~-  358 (852)
T 4fdd_A          282 TLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELLP-  358 (852)
T ss_dssp             HHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGHH-
T ss_pred             HHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHHH-
Confidence            99876543332211  134566666661          22           112357778888888876422  11221 


Q ss_pred             CChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 039015          588 GALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFY  664 (685)
Q Consensus       588 g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~  664 (685)
                      ..++.+.+.+.+. ++..++.|+.+|..++...++.... ..  .++++.|..++.+.++.++..|.+.+..+..+.
T Consensus       359 ~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~-~l--~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~  431 (852)
T 4fdd_A          359 HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIP-YL--PELIPHLIQCLSDKKALVRSITCWTLSRYAHWV  431 (852)
T ss_dssp             HHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGG-GH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHH-HH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            2356677777776 8999999999999999876543322 22  357899999999999999999999988887754

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=98.92  E-value=4.1e-08  Score=100.59  Aligned_cols=201  Identities=8%  Similarity=0.062  Sum_probs=155.1

Q ss_pred             HHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhH
Q 039015          417 LVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEY  496 (685)
Q Consensus       417 i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~  496 (685)
                      +...+.++.|+..|.++++.++..|+.+|.++.          ..++++.|+.+|.++ +..+|..|+.+|..+...+..
T Consensus        19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~-~~~vR~~A~~aL~~l~~~~~~   87 (280)
T 1oyz_A           19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDK-NYIRRDIGAFILGQIKICKKC   87 (280)
T ss_dssp             HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCS-SHHHHHHHHHHHHHSCCCTTT
T ss_pred             HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC----------CchHHHHHHHHHcCC-CHHHHHHHHHHHHHhcccccc
Confidence            345678999999999999999999999999876          246789999999988 899999999999888643221


Q ss_pred             HHHhhcCCCcHHHHHH-HhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHh
Q 039015          497 RKLIGENPEAIPALVD-MVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLA  575 (685)
Q Consensus       497 ~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La  575 (685)
                      .      ...++.|.. ++.++++.++..|+.+|.++......    ....+++.|+.+| .++++.++..|+.+|.++.
T Consensus        88 ~------~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~  156 (280)
T 1oyz_A           88 E------DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITA-FDKSTNVRRATAFAISVIN  156 (280)
T ss_dssp             H------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHT-TCSCHHHHHHHHHHHHTC-
T ss_pred             c------hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHh-hCCCHHHHHHHHHHHHhcC
Confidence            1      113344443 45677899999999999998632211    1224578899999 6788999999999998775


Q ss_pred             cChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHH
Q 039015          576 EKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASA  655 (685)
Q Consensus       576 ~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~  655 (685)
                      .          .+.++.|+.++++. ++.++..|+.+|..+...+ +          .+++.|..++.+.++.++..|..
T Consensus       157 ~----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~~~-~----------~~~~~L~~~l~d~~~~vR~~A~~  214 (280)
T 1oyz_A          157 D----------KATIPLLINLLKDP-NGDVRNWAAFAININKYDN-S----------DIRDCFVEMLQDKNEEVRIEAII  214 (280)
T ss_dssp             ------------CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCCC-H----------HHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             C----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHhhccCc-H----------HHHHHHHHHhcCCCHHHHHHHHH
Confidence            3          24799999999987 9999999999998885432 1          23668888999999999998888


Q ss_pred             HHHHHH
Q 039015          656 LIRILH  661 (685)
Q Consensus       656 lL~~l~  661 (685)
                      .|..+.
T Consensus       215 aL~~~~  220 (280)
T 1oyz_A          215 GLSYRK  220 (280)
T ss_dssp             HHHHTT
T ss_pred             HHHHhC
Confidence            887654

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.89  E-value=1e-09  Score=87.54  Aligned_cols=49  Identities=31%  Similarity=0.513  Sum_probs=43.4

Q ss_pred             CCCccCcCccccCCCc-eeccCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015          278 PDDFTCPISLEIMKDP-VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQS  327 (685)
Q Consensus       278 ~~~~~CpIc~~~m~dP-v~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~  327 (685)
                      ..+..||||++.+.+| +.++|||+||..||.+|+.. +.+||.|+..+..
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   52 (68)
T 1chc_A            3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred             CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence            3467899999999997 67899999999999999987 6899999998763

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=98.85  E-value=2.9e-09  Score=85.09  Aligned_cols=52  Identities=21%  Similarity=0.485  Sum_probs=44.0

Q ss_pred             CCCCCccCcCccccCC---CceeccCcccccHHHHHHHHHcCCCCCCCCCccccCC
Q 039015          276 LTPDDFTCPISLEIMK---DPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSK  328 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~---dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~  328 (685)
                      ...++..|+||++.+.   ++++++|||.||..||.+|+.. +.+||.|+..+...
T Consensus        10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~   64 (69)
T 2kiz_A           10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ   64 (69)
T ss_dssp             STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred             cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence            4456789999999885   4577899999999999999997 67899999988643

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.85  E-value=1.5e-09  Score=82.53  Aligned_cols=47  Identities=23%  Similarity=0.420  Sum_probs=42.0

Q ss_pred             CCccCcCccccCCC----ceeccCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015          279 DDFTCPISLEIMKD----PVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQ  326 (685)
Q Consensus       279 ~~~~CpIc~~~m~d----Pv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~  326 (685)
                      ++..|+||++.+.+    +++++|||.||..||.+|+.. ..+||.|++.+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence            46889999999976    778899999999999999998 489999998764

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.85  E-value=3.1e-09  Score=86.18  Aligned_cols=52  Identities=21%  Similarity=0.403  Sum_probs=45.5

Q ss_pred             CCCCCccCcCccccCCCceec---cCcccccHHHHHHHHHcCCCCCCCCCccccCC
Q 039015          276 LTPDDFTCPISLEIMKDPVTL---STGHTYDRASILKWFRAGNSTCPKTGERLQSK  328 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~---~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~  328 (685)
                      +..++..|+||++.+.+|..+   +|||.||..||.+|+.. ..+||.|++.+...
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~   65 (74)
T 2ep4_A           11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQL   65 (74)
T ss_dssp             CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSC
T ss_pred             cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCcccccc
Confidence            567789999999999988655   99999999999999997 56999999988643

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.84  E-value=1.3e-09  Score=82.92  Aligned_cols=49  Identities=24%  Similarity=0.529  Sum_probs=43.2

Q ss_pred             CCCCccCcCccccCCC---ceecc-CcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015          277 TPDDFTCPISLEIMKD---PVTLS-TGHTYDRASILKWFRAGNSTCPKTGERLQ  326 (685)
Q Consensus       277 ~~~~~~CpIc~~~m~d---Pv~~~-cghtfcr~ci~~~~~~~~~~CP~c~~~l~  326 (685)
                      +.++..|+||++.+.+   ++.++ |||.||..||.+|+.. +.+||.|++.+.
T Consensus         2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~   54 (55)
T 1iym_A            2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV   54 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred             CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence            4567899999999998   78886 9999999999999987 789999998763

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.83  E-value=2.3e-08  Score=119.04  Aligned_cols=273  Identities=14%  Similarity=0.101  Sum_probs=188.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV  458 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i  458 (685)
                      ..++.+...+.+++++++..|++.|..++...+..-.... .+.++.++.++.+.+..++..|+..+..++.....+..+
T Consensus       215 ~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~  293 (852)
T 4fdd_A          215 SFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVL  293 (852)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHH
Confidence            4577788888889999999999999999975543211111 257888889999999999999999999998766444433


Q ss_pred             H--hcCcHHHHHHHhc----------CC-----------CCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhc
Q 039015          459 V--ESGGLDFIVDMVK----------KG-----------LKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR  515 (685)
Q Consensus       459 ~--~~g~i~~Lv~lL~----------~~-----------~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~  515 (685)
                      .  -...++.++..+.          ..           .+..+|..|+.+|..|+.... ...+   ...++.+..++.
T Consensus       294 ~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~~~---~~l~~~l~~~l~  369 (852)
T 4fdd_A          294 VRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-DELL---PHILPLLKELLF  369 (852)
T ss_dssp             TTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG-GGGH---HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc-HHHH---HHHHHHHHHHhc
Confidence            2  1244666666652          11           022358889999988876443 1222   247888888888


Q ss_pred             cCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhc-HHHHHhcCChHHHH
Q 039015          516 DGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDG-TIAILHHGALDMIM  594 (685)
Q Consensus       516 ~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~-~~~i~~~g~v~~Lv  594 (685)
                      +.+...+..|+.+|.+++........-.-.++++.|+.+| .++++.++..|+.+|.+++..-.. .....-.+.++.|+
T Consensus       370 ~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~  448 (852)
T 4fdd_A          370 HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL-SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELL  448 (852)
T ss_dssp             CSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            8899999999999999987654321112345788899999 778899999999999999863211 00000112357777


Q ss_pred             HHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 039015          595 KILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILH  661 (685)
Q Consensus       595 ~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~  661 (685)
                      ..+.+. ++.+++.|+.+|.++|...+......+   .++++.|..++.....+....+...+..+.
T Consensus       449 ~~L~d~-~~~vr~~a~~aL~~l~~~~~~~l~~~l---~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~  511 (852)
T 4fdd_A          449 KRILDS-NKRVQEAACSAFATLEEEACTELVPYL---AYILDTLVFAFSKYQHKNLLILYDAIGTLA  511 (852)
T ss_dssp             HHHTCS-SHHHHHHHHHHHHHHHHHHGGGGGGGH---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHhCC-CHHHHHHHHHHHHHHHHHhhHhhHhHH---HHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            777776 899999999999999976544322222   356778888887776655544444444443

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.82  E-value=6.9e-10  Score=89.08  Aligned_cols=52  Identities=21%  Similarity=0.424  Sum_probs=46.6

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCC
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKE  329 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~  329 (685)
                      ...+.+.|+||++.+.+ ++++|||+||..||.+|+.. ..+||.|++.+...+
T Consensus        11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A           11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCC
T ss_pred             cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCC
Confidence            56778999999999999 99999999999999999985 889999999887543

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.81  E-value=1.2e-09  Score=83.52  Aligned_cols=47  Identities=17%  Similarity=0.105  Sum_probs=41.6

Q ss_pred             CCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCC
Q 039015          278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSK  328 (685)
Q Consensus       278 ~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~  328 (685)
                      .+++.|+||++.+.+|++++|||+||+.||..|    ...||.|++.+...
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~   50 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLG   50 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCC
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeecC
Confidence            467999999999999999999999999999873    67899999987643

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.81  E-value=2.6e-07  Score=104.35  Aligned_cols=264  Identities=14%  Similarity=0.118  Sum_probs=176.7

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV  458 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i  458 (685)
                      ..++.+...+.+.++.+|..|+..|..++.....   .......+|.|..++.+++..++..|+.+|..++..-...  .
T Consensus       164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~  238 (588)
T 1b3u_A          164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--D  238 (588)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--H
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--H
Confidence            4567777778888999999999999999874322   2234577899999999999999999999999887543321  1


Q ss_pred             HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-
Q 039015          459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG-  537 (685)
Q Consensus       459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-  537 (685)
                      .....++.+..++... +..+|..|+.+|..++..-....  .. ...++.++.++++.++.++..|+.+|..++..-. 
T Consensus       239 ~~~~~~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~~--~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~  314 (588)
T 1b3u_A          239 LEALVMPTLRQAAEDK-SWRVRYMVADKFTELQKAVGPEI--TK-TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA  314 (588)
T ss_dssp             HHHHTHHHHHHHHTCS-SHHHHHHHHHTHHHHHHHHCHHH--HH-HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT
T ss_pred             HHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHHhCccc--ch-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCh
Confidence            2345778888888877 89999999999999875322111  12 4579999999999899999999999999885432 


Q ss_pred             -cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHH
Q 039015          538 -NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLAL  616 (685)
Q Consensus       538 -n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L  616 (685)
                       .+....-..++|.+..++ .+++..++..++.+|..++..-. .... ....+|.+..++++. ++.++..++.+|..+
T Consensus       315 ~~~~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~-~~~~-~~~l~p~l~~~l~d~-~~~Vr~~a~~~l~~l  390 (588)
T 1b3u_A          315 DCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPILG-KDNT-IEHLLPLFLAQLKDE-CPEVRLNIISNLDCV  390 (588)
T ss_dssp             TTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHHC-HHHH-HHHTHHHHHHHHTCS-CHHHHHHHHTTCHHH
T ss_pred             hhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhh-HhHH-HHHHHHHHHHHhCCC-chHHHHHHHHHHHHH
Confidence             222223345677788887 66778888888888877765311 1111 112456666777765 677777777777666


Q ss_pred             hccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 039015          617 CINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRIL  660 (685)
Q Consensus       617 ~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l  660 (685)
                      +...+...   ..  ..++|.|..++.+.+.+.+..+...+..+
T Consensus       391 ~~~~~~~~---~~--~~~lp~l~~~~~d~~~~vr~~~~~~l~~l  429 (588)
T 1b3u_A          391 NEVIGIRQ---LS--QSLLPAIVELAEDAKWRVRLAIIEYMPLL  429 (588)
T ss_dssp             HHHSCHHH---HH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHhcCHHH---HH--HHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            65332211   00  12244444555444445544444444443

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.80  E-value=1.4e-09  Score=98.85  Aligned_cols=55  Identities=18%  Similarity=0.432  Sum_probs=48.9

Q ss_pred             CCCccCcCccccCCCc-------eeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCccc
Q 039015          278 PDDFTCPISLEIMKDP-------VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVN  333 (685)
Q Consensus       278 ~~~~~CpIc~~~m~dP-------v~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n  333 (685)
                      .+++.||||++.+.+|       ++++|||+||..||.+|+.. ..+||.|++.+....+.++
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l   66 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI   66 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEEC
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccccc
Confidence            4679999999999999       89999999999999999987 6799999999987665554

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.80  E-value=2.4e-09  Score=90.67  Aligned_cols=51  Identities=18%  Similarity=0.449  Sum_probs=44.8

Q ss_pred             CCCCCccCcCccccCCC---ceeccCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015          276 LTPDDFTCPISLEIMKD---PVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQS  327 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~d---Pv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~  327 (685)
                      ...++..|+||++.+.+   ++.++|||.||..||.+|+.. +.+||.|+..+..
T Consensus        36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP   89 (91)
T ss_dssp             SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred             ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence            34567899999999988   788899999999999999986 7799999998754

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.79  E-value=1.9e-07  Score=105.48  Aligned_cols=264  Identities=14%  Similarity=0.148  Sum_probs=189.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV  459 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~  459 (685)
                      .++.|...+.+.+..+|..|+..|..++...+.   .....-.+|.+..+..+++...+..|+.+|..+...-...   .
T Consensus        88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~---~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~---~  161 (588)
T 1b3u_A           88 LLPPLESLATVEETVVRDKAVESLRAISHEHSP---SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA---V  161 (588)
T ss_dssp             GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH---HHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---H
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---H
Confidence            456666666778899999999999999974432   1233345777778888888999999999998887554321   1


Q ss_pred             hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcH
Q 039015          460 ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNH  539 (685)
Q Consensus       460 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~  539 (685)
                      ....++.+..++... ++++|..|+.+|..++..-.....  . ...+|.|..++.++++.++..|+.+|..++..-+..
T Consensus       162 ~~~l~~~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~~~~--~-~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~  237 (588)
T 1b3u_A          162 KAELRQYFRNLCSDD-TPMVRRAAASKLGEFAKVLELDNV--K-SEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE  237 (588)
T ss_dssp             HHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCHHHH--H-HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcHHhH--H-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH
Confidence            344677888888877 999999999999998754322222  2 458899999999989999999999999887543321


Q ss_pred             HHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhcc
Q 039015          540 WRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCIN  619 (685)
Q Consensus       540 ~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~  619 (685)
                        .....++|.+..++ .+++..++..++.+|..++..... . ......++.++.++++. ++.++..|+.+|..++..
T Consensus       238 --~~~~~~~~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~~~-~-~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~  311 (588)
T 1b3u_A          238 --DLEALVMPTLRQAA-EDKSWRVRYMVADKFTELQKAVGP-E-ITKTDLVPAFQNLMKDC-EAEVRAAASHKVKEFCEN  311 (588)
T ss_dssp             --HHHHHTHHHHHHHH-TCSSHHHHHHHHHTHHHHHHHHCH-H-HHHHTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHhCc-c-cchhHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHH
Confidence              23345788888888 677788999999999999763211 1 12234578888899887 899999999999999876


Q ss_pred             CcHHHHH-HHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 039015          620 GGANVVA-LLVKSPSLMGSLYSLLSQGSSRASKKASALIRILH  661 (685)
Q Consensus       620 ~~~~~~~-~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~  661 (685)
                      .+..... ...  ..++|.+..++.+.+...+..|...|..+.
T Consensus       312 ~~~~~~~~~~~--~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~  352 (588)
T 1b3u_A          312 LSADCRENVIM--SQILPCIKELVSDANQHVKSALASVIMGLS  352 (588)
T ss_dssp             SCTTTHHHHHH--HTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred             hChhhhhhHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            5433111 111  345777778888877777777666555443

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=2.7e-09  Score=86.81  Aligned_cols=50  Identities=20%  Similarity=0.446  Sum_probs=44.2

Q ss_pred             CCCCccCcCccccCCCc---eeccCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015          277 TPDDFTCPISLEIMKDP---VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQS  327 (685)
Q Consensus       277 ~~~~~~CpIc~~~m~dP---v~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~  327 (685)
                      ..++..|+||++.+.++   +.++|||.||..||.+|+.. +.+||.|++.+..
T Consensus        20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP   72 (75)
T ss_dssp             SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred             cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence            35678999999999988   67799999999999999987 6799999998764

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.76  E-value=4.9e-08  Score=113.26  Aligned_cols=193  Identities=17%  Similarity=0.202  Sum_probs=148.1

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHH-HhcCCCCHHHHHHHHHHHHHhcCc--hhHHH
Q 039015          422 CIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVD-MVKKGLKVEARQHAAATLFYIASI--EEYRK  498 (685)
Q Consensus       422 ~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~-lL~~~~~~e~~~~Aa~~L~~Ls~~--~~~~~  498 (685)
                      .|.+++..|.++++..+..|+.+|.||+.++.++..+...|+|..++. +|... +.++|..|+++|.||+..  .+.+.
T Consensus        35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~-~~~Vr~~A~gaLrnL~~~~g~d~~~  113 (684)
T 4gmo_A           35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDN-NIDSRAAGWEILKVLAQEEEADFCV  113 (684)
T ss_dssp             TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhhcCchHHH
Confidence            355677889999999999999999999998888999999999888765 56666 999999999999999865  47888


Q ss_pred             HhhcCCCcHHHHHHHhccCC---------------------HHHHHHHHHHHHHhcCCC-CcHHHHHhcCChHHHHHHhc
Q 039015          499 LIGENPEAIPALVDMVRDGT---------------------DRSKKNALVAIFGLLMHS-GNHWRFLAAGAVPLLLNLLT  556 (685)
Q Consensus       499 ~i~~~~g~i~~Lv~lL~~~~---------------------~~~~~~A~~aL~nLs~~~-~n~~~iv~~G~v~~Lv~lL~  556 (685)
                      .+.. .|++++|..+++...                     .....+++.+|++||... +....+...|+++.|+..|.
T Consensus       114 ~l~~-~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~  192 (684)
T 4gmo_A          114 HLYR-LDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI  192 (684)
T ss_dssp             HHHH-TTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHH-cChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence            8888 999999999986311                     122346788999999654 45667888999999999984


Q ss_pred             cC--CChhHHHHHHHHHHHHhcC-hhcHHHHHhcCChH---HHHHHhhcCCChhHHHHHHHHHHHHhc
Q 039015          557 SS--DSEELITDSLAVLATLAEK-LDGTIAILHHGALD---MIMKILDSCTSRAGKEYCVSLLLALCI  618 (685)
Q Consensus       557 ~~--~~~~~~~~al~~L~~La~~-~~~~~~i~~~g~v~---~Lv~lL~~~~s~~~~e~a~~~L~~L~~  618 (685)
                      ..  ....+...|+.+|..++.+ +.....+.+.+...   .+..+. .+ +...+-.++++|.++..
T Consensus       193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~-~~-~~~~~~la~giL~Ni~~  258 (684)
T 4gmo_A          193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLA-TG-TDPRAVMACGVLHNVFT  258 (684)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHH-HS-SCTTHHHHHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHh-cC-CcHHHHHHHHHHHhHhh
Confidence            32  2467899999999999886 45556666666432   222233 33 44556778899999753

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.76  E-value=8.7e-08  Score=104.78  Aligned_cols=277  Identities=14%  Similarity=0.094  Sum_probs=188.6

Q ss_pred             HHHHHHHHhcCC--CHHHHHHHHHHHHHHhhcC-CchhhHHHhhCCHHHHHHhhcCC--CHHHHHHHHHHhhccccCcc-
Q 039015          380 LANFISDRLLEG--TSEEKNKVAYEVRLLTKSS-IFNRSCLVEVGCIPSLLKLLSSK--DSSTQENAIAALLNLSKHCK-  453 (685)
Q Consensus       380 ~i~~Lv~~L~s~--~~~~~~~a~~~L~~La~~~-~~~r~~i~~~G~ip~Lv~lL~s~--~~~~~~~A~~aL~nLs~~~~-  453 (685)
                      .++.|+..+.++  ++..+..|+..|..+++.. ...-... -...++.++.+|.+.  +..++..|+.++.++...-. 
T Consensus       129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~  207 (462)
T 1ibr_B          129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  207 (462)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            588899999888  8999999999999999743 1110111 124678888999887  78999999999988653211 


Q ss_pred             h-hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh--HHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHH
Q 039015          454 S-KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE--YRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIF  530 (685)
Q Consensus       454 ~-k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~  530 (685)
                      + .......-.++.+...+..+ +.+++..++.+|..++....  ....+.  .+.++.++..+++.++.++..|+..+.
T Consensus       208 ~~~~~~~~~~l~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~v~~~a~~~l~  284 (462)
T 1ibr_B          208 NFDKESERHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYMG--PALFAITIEAMKSDIDEVALQGIEFWS  284 (462)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCGGGCTTTTT--TTHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            1 01111112355666666666 88999999999998875432  112221  168888888888888999999999988


Q ss_pred             HhcCCC------------------CcHHHHHh---cCChHHHHHHhccC------CChhHHHHHHHHHHHHhcChhcHHH
Q 039015          531 GLLMHS------------------GNHWRFLA---AGAVPLLLNLLTSS------DSEELITDSLAVLATLAEKLDGTIA  583 (685)
Q Consensus       531 nLs~~~------------------~n~~~iv~---~G~v~~Lv~lL~~~------~~~~~~~~al~~L~~La~~~~~~~~  583 (685)
                      +++...                  .....+++   ..++|.+++.|...      .+...+..|..+|..|+..-.  ..
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~  362 (462)
T 1ibr_B          285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DD  362 (462)
T ss_dssp             HHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TT
T ss_pred             HHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HH
Confidence            887532                  00001111   23567777777321      223678888889888876422  12


Q ss_pred             HHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015          584 ILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF  663 (685)
Q Consensus       584 i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~  663 (685)
                      +.. ..++.+...+++. +...++.|+.+|..++.+..........  ..++|.|..++.+.++.++..|.+.|..+...
T Consensus       363 ~~~-~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          363 IVP-HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             HHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            221 2356666677776 8899999999999999764322111111  46899999999999999999999999988886


Q ss_pred             hcc
Q 039015          664 YER  666 (685)
Q Consensus       664 ~~~  666 (685)
                      ...
T Consensus       439 ~~~  441 (462)
T 1ibr_B          439 LPE  441 (462)
T ss_dssp             GGG
T ss_pred             ccc
Confidence            543

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.71  E-value=8.2e-09  Score=91.29  Aligned_cols=49  Identities=16%  Similarity=0.329  Sum_probs=42.1

Q ss_pred             CCccCcCccccCCCce------------------eccCcccccHHHHHHHHHc----CCCCCCCCCccccC
Q 039015          279 DDFTCPISLEIMKDPV------------------TLSTGHTYDRASILKWFRA----GNSTCPKTGERLQS  327 (685)
Q Consensus       279 ~~~~CpIc~~~m~dPv------------------~~~cghtfcr~ci~~~~~~----~~~~CP~c~~~l~~  327 (685)
                      .+..||||++.|.+|+                  +++|||.||..||.+|+..    ++.+||.|+..+..
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            4579999999998876                  6799999999999999963    36799999988754

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.69  E-value=9.7e-08  Score=110.76  Aligned_cols=195  Identities=13%  Similarity=0.099  Sum_probs=145.5

Q ss_pred             cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHH-HHhccCCHHHHHHHHHHHHHhcCCC--C
Q 039015          461 SGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALV-DMVRDGTDRSKKNALVAIFGLLMHS--G  537 (685)
Q Consensus       461 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv-~lL~~~~~~~~~~A~~aL~nLs~~~--~  537 (685)
                      ...|.++++.|+++ +++.|..|+++|.+|+.++..+..+.. .|+|..++ .+|.+.+..++..|+++|.||+.+.  +
T Consensus        33 ~~~i~Pll~~L~S~-~~~~r~~A~~al~~l~~~~~~~~l~~~-~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d  110 (684)
T 4gmo_A           33 EDKILPVLKDLKSP-DAKSRTTAAGAIANIVQDAKCRKLLLR-EQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD  110 (684)
T ss_dssp             HHTTHHHHHHHSSS-CCSHHHHHHHHHHHHTTSHHHHHHHHH-TTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred             hhhHHHHHHHcCCC-CHHHHHHHHHHHHHHHcCcHHHHHHHH-cCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence            34566777889998 999999999999999998899998888 77777665 5788889999999999999999654  5


Q ss_pred             cHHHHHhcCChHHHHHHhccC--------C-----C-------hhHHHHHHHHHHHHhc-ChhcHHHHHhcCChHHHHHH
Q 039015          538 NHWRFLAAGAVPLLLNLLTSS--------D-----S-------EELITDSLAVLATLAE-KLDGTIAILHHGALDMIMKI  596 (685)
Q Consensus       538 n~~~iv~~G~v~~Lv~lL~~~--------~-----~-------~~~~~~al~~L~~La~-~~~~~~~i~~~g~v~~Lv~l  596 (685)
                      .+..+++.|++++|..+|.+.        .     .       ..+.+.++.+|.+||. +.+....+...++++.|+..
T Consensus       111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~  190 (684)
T 4gmo_A          111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR  190 (684)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence            788999999999999998420        0     0       1345678889999986 45566778888889999996


Q ss_pred             hhcC--CChhHHHHHHHHHHHHhccCcHHHHHHHHhcCC---cHHHHHHHHhcCChHHHHHHHHHHHHH
Q 039015          597 LDSC--TSRAGKEYCVSLLLALCINGGANVVALLVKSPS---LMGSLYSLLSQGSSRASKKASALIRIL  660 (685)
Q Consensus       597 L~~~--~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g---~i~~L~~Ll~~g~~~~k~~A~~lL~~l  660 (685)
                      |...  ....+...|+.+|..++.++.+ ..+.+.. .|   ++..|..+..+.+.. +..+..+|..+
T Consensus       191 L~~~~~~~~~v~~~a~~~L~~ls~dn~~-~~~~i~~-~~~~~~~~~ll~~~~~~~~~-~~la~giL~Ni  256 (684)
T 4gmo_A          191 LISADIAPQDIYEEAISCLTTLSEDNLK-VGQAITD-DQETHVYDVLLKLATGTDPR-AVMACGVLHNV  256 (684)
T ss_dssp             HHHHCCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHT-CCSSCHHHHHHHHHHSSCTT-HHHHHHHHHHH
T ss_pred             HHhcCCCcHHHHHHHHHHHHHHhccCHH-HHHHHHh-cchHHHHHHHHHHhcCCcHH-HHHHHHHHHhH
Confidence            5432  2457889999999999998754 4455554 33   345555555444444 44445555444

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.67  E-value=2e-06  Score=98.06  Aligned_cols=263  Identities=13%  Similarity=0.120  Sum_probs=183.6

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchh-HH
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSK-SM  457 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k-~~  457 (685)
                      ..++.+.+.|.+.++.+|..|+.++..+...+++   .+.+.|++|.|..+|.++|+.++.+|+.+|..+..+.... ..
T Consensus       121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~  197 (591)
T 2vgl_B          121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLL  197 (591)
T ss_dssp             HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccch
Confidence            4567788889999999999999999999985554   3444688999999999999999999999999998766432 11


Q ss_pred             HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC--
Q 039015          458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH--  535 (685)
Q Consensus       458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~--  535 (685)
                      -...+.+..|+..+... ++-.+.....+|..+...++.  ..   ...++.+..++++.++.++..|++++.++...  
T Consensus       198 ~l~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~~~~--~~---~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~  271 (591)
T 2vgl_B          198 DLNPQNINKLLTALNEC-TEWGQIFILDCLSNYNPKDDR--EA---QSICERVTPRLSHANSAVVLSAVKVLMKFLELLP  271 (591)
T ss_dssp             CCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCCSHH--HH---HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCC
T ss_pred             hccHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCCChH--HH---HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccC
Confidence            12345677788888777 788888888888887744321  11   23678888889988899999999999998742  


Q ss_pred             -CCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-hh------------------c-HHHH------HhcC
Q 039015          536 -SGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK-LD------------------G-TIAI------LHHG  588 (685)
Q Consensus       536 -~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~-~~------------------~-~~~i------~~~g  588 (685)
                       .+.....+-..+.+.|+.++ + ++..++-.|+..|..++.. +.                  . +.++      .+..
T Consensus       272 ~~~~~~~~~~~~~~~~L~~L~-~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~  349 (591)
T 2vgl_B          272 KDSDYYNMLLKKLAPPLVTLL-S-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQA  349 (591)
T ss_dssp             BTTBSHHHHHHHTHHHHHHHT-T-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSS
T ss_pred             CCHHHHHHHHHHHHHHHHHHh-c-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChh
Confidence             22222223344567777766 3 5677888888888777641 11                  1 1111      1222


Q ss_pred             ChH----HHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 039015          589 ALD----MIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRIL  660 (685)
Q Consensus       589 ~v~----~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l  660 (685)
                      .+.    .|...+++. +...+..++.++..+|...++...       ..++.|+.++.+..+.....+...++.+
T Consensus       350 nv~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~~~~~~-------~~v~~Ll~ll~~~~~~v~~e~i~~l~~i  417 (591)
T 2vgl_B          350 NIAQVLAELKEYATEV-DVDFVRKAVRAIGRCAIKVEQSAE-------RCVSTLLDLIQTKVNYVVQEAIVVIRDI  417 (591)
T ss_dssp             THHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTCHHHHH-------HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhChhHHH-------HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence            344    344455565 889999999999999987643321       2366888889888777766655555444

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.63  E-value=5.9e-09  Score=84.56  Aligned_cols=45  Identities=16%  Similarity=0.211  Sum_probs=41.0

Q ss_pred             CCCccCcCccccCCCceeccCccc-ccHHHHHHHHHcCCCCCCCCCccccC
Q 039015          278 PDDFTCPISLEIMKDPVTLSTGHT-YDRASILKWFRAGNSTCPKTGERLQS  327 (685)
Q Consensus       278 ~~~~~CpIc~~~m~dPv~~~cght-fcr~ci~~~~~~~~~~CP~c~~~l~~  327 (685)
                      .+++.|+||++.+.+|++++|||+ ||..|+..|     ..||.|++.+..
T Consensus        22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF   67 (74)
T ss_dssp             HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred             ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence            456899999999999999999999 999999988     789999998864

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.61  E-value=2.1e-08  Score=105.86  Aligned_cols=50  Identities=20%  Similarity=0.288  Sum_probs=45.3

Q ss_pred             CCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCC
Q 039015          279 DDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSK  328 (685)
Q Consensus       279 ~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~  328 (685)
                      ....|+||.+.+.+|+.++|||+||..||..|+..+..+||.|+..+...
T Consensus       331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~  380 (389)
T 2y1n_A          331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT  380 (389)
T ss_dssp             SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred             CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence            34799999999999999999999999999999986588999999988654

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.58  E-value=1.2e-08  Score=92.67  Aligned_cols=56  Identities=18%  Similarity=0.418  Sum_probs=50.1

Q ss_pred             CCCCccCcCccccCCCc-------eeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCccc
Q 039015          277 TPDDFTCPISLEIMKDP-------VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVN  333 (685)
Q Consensus       277 ~~~~~~CpIc~~~m~dP-------v~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n  333 (685)
                      .++.+.|+||++.+.+|       +.++|||+||..||.+|+.. ..+||.|+..+...++.|+
T Consensus        69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~  131 (133)
T 4ap4_A           69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI  131 (133)
T ss_dssp             SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEE
T ss_pred             CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceee
Confidence            46789999999999988       88899999999999999998 7899999999988777665

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.49  E-value=5.9e-08  Score=80.11  Aligned_cols=48  Identities=21%  Similarity=0.421  Sum_probs=40.0

Q ss_pred             CCccCcCccccCCC--------------ceec-cCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015          279 DDFTCPISLEIMKD--------------PVTL-STGHTYDRASILKWFRAGNSTCPKTGERLQS  327 (685)
Q Consensus       279 ~~~~CpIc~~~m~d--------------Pv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~  327 (685)
                      ++..|+||++.+.+              ++.+ +|||.|+..||.+|+.. +.+||.|++.+..
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~   76 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV   76 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence            45679999998877              4455 59999999999999997 6799999998754

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.49  E-value=7.6e-08  Score=75.53  Aligned_cols=48  Identities=23%  Similarity=0.234  Sum_probs=43.3

Q ss_pred             CCCccCcCccccCCCceec--cCccc-ccHHHHHHHHHcCCCCCCCCCcccc
Q 039015          278 PDDFTCPISLEIMKDPVTL--STGHT-YDRASILKWFRAGNSTCPKTGERLQ  326 (685)
Q Consensus       278 ~~~~~CpIc~~~m~dPv~~--~cght-fcr~ci~~~~~~~~~~CP~c~~~l~  326 (685)
                      +++..|+||++...+++++  +|||. ||..|+.+|+.. +..||.||+.+.
T Consensus         6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~   56 (64)
T 2vje_A            6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ   56 (64)
T ss_dssp             GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred             CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence            4567899999999999987  99999 899999999986 678999999875

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.48  E-value=4e-08  Score=79.86  Aligned_cols=45  Identities=16%  Similarity=0.214  Sum_probs=40.0

Q ss_pred             CCCccCcCccccCCCceeccCccc-ccHHHHHHHHHcCCCCCCCCCccccC
Q 039015          278 PDDFTCPISLEIMKDPVTLSTGHT-YDRASILKWFRAGNSTCPKTGERLQS  327 (685)
Q Consensus       278 ~~~~~CpIc~~~m~dPv~~~cght-fcr~ci~~~~~~~~~~CP~c~~~l~~  327 (685)
                      .+++.|+||++.+.+|++++|||+ ||..|+.+     ...||.|++.+..
T Consensus        23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF   68 (75)
T ss_dssp             HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred             CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence            456899999999999999999999 99999964     4789999998865

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.43  E-value=1.8e-06  Score=98.38  Aligned_cols=252  Identities=13%  Similarity=0.135  Sum_probs=173.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV  459 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~  459 (685)
                      .+..+.+.|.+++.+.+..++..+-.+.-.+.+.      ..+.+.+++++.+++..++..+..++.+++.....-  + 
T Consensus        14 e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~--~-   84 (591)
T 2vgl_B           14 EIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDV------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDM--A-   84 (591)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCC------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHH--H-
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCh------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchH--H-
Confidence            4777889999999888888776665443323221      235678889999999999999988888876532211  1 


Q ss_pred             hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcH
Q 039015          460 ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNH  539 (685)
Q Consensus       460 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~  539 (685)
                       .-++..+..-|.++ ++..|..|+.+|.++.. ++..      ...++.+..++.+.++.+++.|+.+|.++....+. 
T Consensus        85 -~l~~n~l~kdL~~~-n~~ir~~AL~~L~~i~~-~~~~------~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~-  154 (591)
T 2vgl_B           85 -IMAVNSFVKDCEDP-NPLIRALAVRTMGCIRV-DKIT------EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ-  154 (591)
T ss_dssp             -HTTHHHHGGGSSSS-SHHHHHHHHHHHHTCCS-GGGH------HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC-
T ss_pred             -HHHHHHHHHHcCCC-CHHHHHHHHHHHHcCCh-HHHH------HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh-
Confidence             22356666777777 99999999999988852 2222      23467899999999999999999999999864332 


Q ss_pred             HHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHH-HHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 039015          540 WRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTI-AILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCI  618 (685)
Q Consensus       540 ~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~-~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~  618 (685)
                       .+.+.|.++.|..+| .++++.++..|+.+|..++....... .....+.++.|+..+... ++..+-..+.+|..++.
T Consensus       155 -~~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~  231 (591)
T 2vgl_B          155 -MVEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNEC-TEWGQIFILDCLSNYNP  231 (591)
T ss_dssp             -CHHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCC
T ss_pred             -hcccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCC
Confidence             223357889999999 68889999999999999987533110 001112255667766666 88888888888887775


Q ss_pred             cCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 039015          619 NGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRIL  660 (685)
Q Consensus       619 ~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l  660 (685)
                      .++....       .+++.+..++++.++.+...|..++..+
T Consensus       232 ~~~~~~~-------~~l~~l~~~l~~~~~~V~~ea~~~i~~l  266 (591)
T 2vgl_B          232 KDDREAQ-------SICERVTPRLSHANSAVVLSAVKVLMKF  266 (591)
T ss_dssp             CSHHHHH-------HHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred             CChHHHH-------HHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            5433221       2345666666666666665555554443

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.42  E-value=5e-08  Score=83.03  Aligned_cols=66  Identities=17%  Similarity=0.301  Sum_probs=47.9

Q ss_pred             CCccCcCccccCCCceec---cCcccccHHHHHHHHHc----C---CCCCCC--CCcc--ccCCCCcccHHHHhhHHHHH
Q 039015          279 DDFTCPISLEIMKDPVTL---STGHTYDRASILKWFRA----G---NSTCPK--TGER--LQSKELLVNLVLKRIIQDWS  344 (685)
Q Consensus       279 ~~~~CpIc~~~m~dPv~~---~cghtfcr~ci~~~~~~----~---~~~CP~--c~~~--l~~~~l~~n~~l~~~i~~~~  344 (685)
                      +.+.||||++.+.+|+.+   +|||.||+.|+..|+..    |   ...||.  |+..  +....+ .+....++++.|.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i-~~ll~~~~~~ky~   82 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI-ECMVAAEIMQRYK   82 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH-HHHSCHHHHHHHH
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH-HHHCCHHHHHHHH
Confidence            468999999999999865   69999999999999973    3   348999  9887  544322 1222244555665


Q ss_pred             H
Q 039015          345 V  345 (685)
Q Consensus       345 ~  345 (685)
                      +
T Consensus        83 ~   83 (94)
T 1wim_A           83 K   83 (94)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.40  E-value=1.5e-07  Score=73.59  Aligned_cols=48  Identities=19%  Similarity=0.223  Sum_probs=42.7

Q ss_pred             CCccCcCccccCCCceec--cCccc-ccHHHHHHHHHcCCCCCCCCCccccC
Q 039015          279 DDFTCPISLEIMKDPVTL--STGHT-YDRASILKWFRAGNSTCPKTGERLQS  327 (685)
Q Consensus       279 ~~~~CpIc~~~m~dPv~~--~cght-fcr~ci~~~~~~~~~~CP~c~~~l~~  327 (685)
                      ....|+||++...|++++  +|||. ||..|+.+|+.. ...||.||+++..
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~   56 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQL   56 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCE
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhc
Confidence            347899999999999988  99998 999999999886 5789999998853

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.36  E-value=2.7e-07  Score=80.03  Aligned_cols=47  Identities=17%  Similarity=0.350  Sum_probs=40.2

Q ss_pred             CCccCcCccccCCCc------------------eeccCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015          279 DDFTCPISLEIMKDP------------------VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQ  326 (685)
Q Consensus       279 ~~~~CpIc~~~m~dP------------------v~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~  326 (685)
                      ++-.|+||++.|.++                  +.++|||.|+..||.+|+.. +.+||.|++.+.
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~  100 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  100 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence            356799999999876                  33589999999999999987 889999998753

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.35  E-value=1.9e-05  Score=93.66  Aligned_cols=275  Identities=14%  Similarity=0.100  Sum_probs=186.5

Q ss_pred             HHHHHHHHhcCC--CHHHHHHHHHHHHHHhhcCCchhhHHHh--hCCHHHHHHhhcCC--CHHHHHHHHHHhhccccCcc
Q 039015          380 LANFISDRLLEG--TSEEKNKVAYEVRLLTKSSIFNRSCLVE--VGCIPSLLKLLSSK--DSSTQENAIAALLNLSKHCK  453 (685)
Q Consensus       380 ~i~~Lv~~L~s~--~~~~~~~a~~~L~~La~~~~~~r~~i~~--~G~ip~Lv~lL~s~--~~~~~~~A~~aL~nLs~~~~  453 (685)
                      .++.|++.+.++  ++..+..++..|..++....  ...+..  ...++.+...+.++  +..++..|+.+|.++...-.
T Consensus       129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~  206 (876)
T 1qgr_A          129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDID--PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  206 (876)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC--HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC--HhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            478888999888  89999999999999987421  111221  24577778888776  68899999999988764321


Q ss_pred             -h-hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch--hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHH
Q 039015          454 -S-KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE--EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAI  529 (685)
Q Consensus       454 -~-k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL  529 (685)
                       + .........++.+...+... +.+++..++.+|..+....  .....+.  ...++.++..+.+.++.++..|+..+
T Consensus       207 ~~~~~~~~~~~il~~l~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~v~~~al~~l  283 (876)
T 1qgr_A          207 ANFDKESERHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYMG--PALFAITIEAMKSDIDEVALQGIEFW  283 (876)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSGGGCHHHHT--TTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHhcCCchHHHHHHHHHH
Confidence             1 11111123567777777766 8899999999998887533  2222332  36888888888888888999999988


Q ss_pred             HHhcCCC-------------------C--cHHHHHhcCChHHHHHHhcc------CCChhHHHHHHHHHHHHhcChhcHH
Q 039015          530 FGLLMHS-------------------G--NHWRFLAAGAVPLLLNLLTS------SDSEELITDSLAVLATLAEKLDGTI  582 (685)
Q Consensus       530 ~nLs~~~-------------------~--n~~~iv~~G~v~~Lv~lL~~------~~~~~~~~~al~~L~~La~~~~~~~  582 (685)
                      .+++...                   .  ...+-.-...++.++..|..      +.+..++..|..+|..++..-..  
T Consensus       284 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--  361 (876)
T 1qgr_A          284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--  361 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--
T ss_pred             HHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--
Confidence            8887431                   0  11100112356777777742      22346778888888888764221  


Q ss_pred             HHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 039015          583 AILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHE  662 (685)
Q Consensus       583 ~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~  662 (685)
                      .++. ..++.+...+.+. +...++.|+.+|..++...+++......  ..+++.|+..+.+.++.++..|.+.+..+..
T Consensus       362 ~~~~-~~l~~l~~~l~~~-~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~  437 (876)
T 1qgr_A          362 DIVP-HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE  437 (876)
T ss_dssp             GGHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             hhHH-HHHHHHHHHccCC-ChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            1111 2345555667666 8899999999999999876533222222  3468899999999999999999998888887


Q ss_pred             hhc
Q 039015          663 FYE  665 (685)
Q Consensus       663 ~~~  665 (685)
                      ...
T Consensus       438 ~~~  440 (876)
T 1qgr_A          438 LLP  440 (876)
T ss_dssp             HCG
T ss_pred             hCc
Confidence            643

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.30  E-value=3.5e-06  Score=99.72  Aligned_cols=273  Identities=13%  Similarity=0.150  Sum_probs=179.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCC-chhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchh--
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSI-FNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSK--  455 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~-~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k--  455 (685)
                      ..++.+.+.+.+.+...|..|+..|..++.... ..-.... ...+|.|+..+.++++.++..++++|..++..-...  
T Consensus       369 ~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~  447 (861)
T 2bpt_A          369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID  447 (861)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred             HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence            456677777788899999999999999986332 1111111 257889999999999999999999999887542110  


Q ss_pred             HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh------HHHHhhcCCCcHHHHHHHhccCC--HHHHHHHHH
Q 039015          456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE------YRKLIGENPEAIPALVDMVRDGT--DRSKKNALV  527 (685)
Q Consensus       456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~------~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~~A~~  527 (685)
                      ..-.-...++.++..|+..  +.++..|+.+|.+++..-.      ....+   ...++.|+.++.+.+  +.++..++.
T Consensus       448 ~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~~~---~~il~~L~~~l~~~d~~~~vr~~a~~  522 (861)
T 2bpt_A          448 PQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPSPIYNFY---PALVDGLIGAANRIDNEFNARASAFS  522 (861)
T ss_dssp             TTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH---HHHHHHHHHHHTCSCCGGGHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccchhhHHHH---HHHHHHHHHHHhCcCcchHHHHHHHH
Confidence            0001234577888888654  8899999999998865321      12222   236788888887533  678888999


Q ss_pred             HHHHhcCCCCc-HHHHHhcCChHHHHHHhccC--------------CChhHHHHHHHHHHHHhcChhc-HHHHHhcCChH
Q 039015          528 AIFGLLMHSGN-HWRFLAAGAVPLLLNLLTSS--------------DSEELITDSLAVLATLAEKLDG-TIAILHHGALD  591 (685)
Q Consensus       528 aL~nLs~~~~n-~~~iv~~G~v~~Lv~lL~~~--------------~~~~~~~~al~~L~~La~~~~~-~~~i~~~g~v~  591 (685)
                      +|..+....+. ....+. ..++.+++.|...              ....++..++.+|..++..-.. -..... ..++
T Consensus       523 al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~  600 (861)
T 2bpt_A          523 ALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMG  600 (861)
T ss_dssp             HHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHH
T ss_pred             HHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHH
Confidence            99998854432 222222 3667777776321              1234566788888888753211 000111 1356


Q ss_pred             HHHHHhhcCCCh-hHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015          592 MIMKILDSCTSR-AGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF  663 (685)
Q Consensus       592 ~Lv~lL~~~~s~-~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~  663 (685)
                      .++.+++.. +. .+++.++.++..++...+......+   ..+++.|...+.+.+...+..|..++..+.+.
T Consensus       601 ~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~l---~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~  669 (861)
T 2bpt_A          601 LFFRLLEKK-DSAFIEDDVFYAISALAASLGKGFEKYL---ETFSPYLLKALNQVDSPVSITAVGFIADISNS  669 (861)
T ss_dssp             HHHHHHHST-TGGGTHHHHHHHHHHHHHHHGGGGHHHH---HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccC-CCCcHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            677777765 55 7899999999888876544443333   23688889888777778888888877766554

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.28  E-value=1.6e-05  Score=91.10  Aligned_cols=217  Identities=11%  Similarity=0.111  Sum_probs=144.2

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHH
Q 039015          378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSM  457 (685)
Q Consensus       378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~  457 (685)
                      ...+..|.+.|.+.++..+..|++.|..+..  +    .+. ...+|.+..+|.+.++.++..|+.++.++......   
T Consensus       106 ~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~----~~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~---  175 (618)
T 1w63_A          106 LLMTNCIKNDLNHSTQFVQGLALCTLGCMGS--S----EMC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE---  175 (618)
T ss_dssp             HHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC--H----HHH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG---
T ss_pred             HHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC--H----HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH---
Confidence            4568899999999999999999999998863  2    222 35688899999999999999999999999864332   


Q ss_pred             HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhcc---------------CCHHH
Q 039015          458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRD---------------GTDRS  521 (685)
Q Consensus       458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~---------------~~~~~  521 (685)
                      ++ .+.++.+..+|... ++.++..|+.+|..++..+ +....+.   ..+|.|+.+|.+               .++-.
T Consensus       176 ~v-~~~~~~l~~lL~D~-d~~V~~~Al~~L~~i~~~~~~~~~~~~---~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~  250 (618)
T 1w63_A          176 LM-EMFLPATKNLLNEK-NHGVLHTSVVLLTEMCERSPDMLAHFR---KLVPQLVRILKNLIMSGYSPEHDVSGISDPFL  250 (618)
T ss_dssp             GG-GGGGGGTTTSTTCC-CHHHHHHHHHHHHHHCCSHHHHHHHHH---TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHH
T ss_pred             HH-HHHHHHHHHHhCCC-CHhHHHHHHHHHHHHHHhChHHHHHHH---HHHHHHHHHHHHHHcCCCCccccccCCCCChH
Confidence            11 26778888888877 8999999999999998765 3222332   478888888763               36778


Q ss_pred             HHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhcc-----CCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHH
Q 039015          522 KKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTS-----SDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKI  596 (685)
Q Consensus       522 ~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~-----~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~l  596 (685)
                      +...+.+|..++..+...    .....+.|..++..     +.+..+.-.|+.++..+...+..+.     .++..|..+
T Consensus       251 q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~-----~a~~~L~~~  321 (618)
T 1w63_A          251 QVRILRLLRILGRNDDDS----SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRV-----LAINILGRF  321 (618)
T ss_dssp             HHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH-----HHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHH
Confidence            888889998888654221    12344455555421     1123455555666655543322111     123445555


Q ss_pred             hhcCCChhHHHHHHHHHHHHhcc
Q 039015          597 LDSCTSRAGKEYCVSLLLALCIN  619 (685)
Q Consensus       597 L~~~~s~~~~e~a~~~L~~L~~~  619 (685)
                      +.+. ++.++..|+.+|..++..
T Consensus       322 L~~~-d~~vr~~aL~~L~~i~~~  343 (618)
T 1w63_A          322 LLNN-DKNIRYVALTSLLKTVQT  343 (618)
T ss_dssp             HTCS-STTTHHHHHHHHHHHHHH
T ss_pred             HhCC-CCchHHHHHHHHHHHHhh
Confidence            5544 555566666555555543

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.28  E-value=2.5e-05  Score=89.48  Aligned_cols=218  Identities=13%  Similarity=0.081  Sum_probs=140.4

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchh-H
Q 039015          378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSK-S  456 (685)
Q Consensus       378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k-~  456 (685)
                      +..++.+.+.|.+.++.+|..|+.++..+...+++.-.     ++++.+..+|.+.|+.++..|+.+|..+..++... .
T Consensus       141 ~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~  215 (618)
T 1w63_A          141 RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA  215 (618)
T ss_dssp             HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHH
Confidence            45578888889999999999999999999987665322     67888999999999999999999999998764331 1


Q ss_pred             HHHhcCcHHHHHHHhcC--------------CCCHHHHHHHHHHHHHhcCchh-HHHHhhcCCCcHHHHHHHhcc-----
Q 039015          457 MVVESGGLDFIVDMVKK--------------GLKVEARQHAAATLFYIASIEE-YRKLIGENPEAIPALVDMVRD-----  516 (685)
Q Consensus       457 ~i~~~g~i~~Lv~lL~~--------------~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~-----  516 (685)
                      .+  ...++.++.+|..              -.++-.+...+.+|..++..+. ...      ..++.|..++..     
T Consensus       216 ~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~------~~~~~L~~l~~~~~~~~  287 (618)
T 1w63_A          216 HF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE------AMNDILAQVATNTETSK  287 (618)
T ss_dssp             HH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH------TTHHHHHHHHHTSCCSS
T ss_pred             HH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH------HHHHHHHHHHhcccccc
Confidence            22  3678888887763              1257778888888888876542 111      234444444421     


Q ss_pred             -CCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHH
Q 039015          517 -GTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMK  595 (685)
Q Consensus       517 -~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~  595 (685)
                       .+..+...|+.++.++...+    .+. ..++..|..+| .+.+..++..|+..|..++....  . ++. .....++.
T Consensus       288 ~~~~aV~~ea~~~i~~l~~~~----~l~-~~a~~~L~~~L-~~~d~~vr~~aL~~L~~i~~~~p--~-~~~-~~~~~i~~  357 (618)
T 1w63_A          288 NVGNAILYETVLTIMDIKSES----GLR-VLAINILGRFL-LNNDKNIRYVALTSLLKTVQTDH--N-AVQ-RHRSTIVD  357 (618)
T ss_dssp             THHHHHHHHHHHHHHHSCCCH----HHH-HHHHHHHHHHH-TCSSTTTHHHHHHHHHHHHHHHH--H-HHG-GGHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCCCH----HHH-HHHHHHHHHHH-hCCCCchHHHHHHHHHHHHhhCH--H-HHH-HHHHHHHH
Confidence             22355556667776654321    111 13456666666 44556677777777776665311  1 111 12345555


Q ss_pred             HhhcCCChhHHHHHHHHHHHHhcc
Q 039015          596 ILDSCTSRAGKEYCVSLLLALCIN  619 (685)
Q Consensus       596 lL~~~~s~~~~e~a~~~L~~L~~~  619 (685)
                      ++.+. +..++..|+.+|..++..
T Consensus       358 ~l~d~-d~~Ir~~alelL~~l~~~  380 (618)
T 1w63_A          358 CLKDL-DVSIKRRAMELSFALVNG  380 (618)
T ss_dssp             GGGSS-CHHHHHHHHHHHHHHCCS
T ss_pred             HccCC-ChhHHHHHHHHHHHHccc
Confidence            55555 666666666666666654

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.27  E-value=1.7e-05  Score=77.01  Aligned_cols=189  Identities=14%  Similarity=0.090  Sum_probs=144.9

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcc-hhH
Q 039015          378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCK-SKS  456 (685)
Q Consensus       378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~-~k~  456 (685)
                      +..+..|...|...|+..+.+|+..|..+-+.-+..-....=...+|.++.++.+.|..+..+|+.+|.-|-.+.+ ...
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            3467888899999999999999999999988533322222223569999999999999999999999988876553 233


Q ss_pred             HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 039015          457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS  536 (685)
Q Consensus       457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~  536 (685)
                      .+..  .+..+..+++++ +.-.+..|+..|..|......       .+.+..|..++.+.+.+.+..|+.+|.|++...
T Consensus       112 ~y~K--l~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S  181 (265)
T 3b2a_A          112 TFLK--AAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS  181 (265)
T ss_dssp             HHHH--HHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred             HHHH--HHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence            3322  367788888888 899999999999999332222       346778888898889999999999999999766


Q ss_pred             CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChh
Q 039015          537 GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLD  579 (685)
Q Consensus       537 ~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~  579 (685)
                      +...  +-.+++.-+-.+| ++.++.+.+.|+.+|..+.+.+-
T Consensus       182 ~D~~--i~~~I~~eI~elL-~~eD~~l~e~aLd~Le~ils~pi  221 (265)
T 3b2a_A          182 ADSG--HLTLILDEIPSLL-QNDNEFIVELALDVLEKALSFPL  221 (265)
T ss_dssp             SSCC--CGGGTTTTHHHHH-TCSCHHHHHHHHHHHHHHTTSCC
T ss_pred             CCHH--HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCcc
Confidence            5433  1233455577788 56699999999999999988654

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.27  E-value=1.4e-05  Score=94.74  Aligned_cols=272  Identities=10%  Similarity=0.058  Sum_probs=182.1

Q ss_pred             HHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhcCCch-hhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcch-
Q 039015          379 LLANFISDRLLEG--TSEEKNKVAYEVRLLTKSSIFN-RSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS-  454 (685)
Q Consensus       379 ~~i~~Lv~~L~s~--~~~~~~~a~~~L~~La~~~~~~-r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-  454 (685)
                      ..++.+.+.+.++  +.++|..|++++..++..-..+ .........++.+...+.+.+..++..++.+|..+...... 
T Consensus       172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~  251 (876)
T 1qgr_A          172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY  251 (876)
T ss_dssp             HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence            3567777888766  6889999999999887532211 01111123577778888888899999999999988754332 


Q ss_pred             hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhH-----------------------HHHhhcCCCcHHHHH
Q 039015          455 KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEY-----------------------RKLIGENPEAIPALV  511 (685)
Q Consensus       455 k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~-----------------------~~~i~~~~g~i~~Lv  511 (685)
                      -...+....++.++..+... +.+++..|+.++..++.....                       +..+   ...++.++
T Consensus       252 ~~~~~~~~l~~~~~~~~~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ll~~ll  327 (876)
T 1qgr_A          252 METYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL---QYLVPILT  327 (876)
T ss_dssp             CHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH---HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH---HHHhHHHH
Confidence            11222347788888888776 889999999988888654210                       0011   23567777


Q ss_pred             HHhcc-------CCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChh--cHH
Q 039015          512 DMVRD-------GTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLD--GTI  582 (685)
Q Consensus       512 ~lL~~-------~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~--~~~  582 (685)
                      ..+..       .+...++.|+.+|..|+..-+.  .++ ..+++.+...+ .+.+..++..|+.+|..++....  ...
T Consensus       328 ~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l-~~~~~~~r~~a~~~l~~i~~~~~~~~~~  403 (876)
T 1qgr_A          328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHI-KNPDWRYRDAAVMAFGCILEGPEPSQLK  403 (876)
T ss_dssp             HHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHT-TCSSHHHHHHHHHHHHHTSSSSCHHHHH
T ss_pred             HHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHc-cCCChHHHHHHHHHHHHHHcCCCHHHHH
Confidence            77752       2356788888888888643221  112 23456666666 56788999999999999987532  222


Q ss_pred             HHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHH--HHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 039015          583 AILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANV--VALLVKSPSLMGSLYSLLSQGSSRASKKASALIRIL  660 (685)
Q Consensus       583 ~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~--~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l  660 (685)
                      ... ...++.++..+.+. ++.++..|+.+|.+++...+...  ...+   ..+++.|+..+.+. ++.+..|.+.+..+
T Consensus       404 ~~~-~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~l---~~~l~~l~~~l~~~-~~v~~~a~~al~~l  477 (876)
T 1qgr_A          404 PLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLPEAAINDVYL---APLLQCLIEGLSAE-PRVASNVCWAFSSL  477 (876)
T ss_dssp             HHH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGGGTSSTTTH---HHHHHHHHHHTTSC-HHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhCchhcccHHHH---HHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Confidence            222 23578888888887 89999999999999998654321  0111   23567788888774 88888888877777


Q ss_pred             HHhh
Q 039015          661 HEFY  664 (685)
Q Consensus       661 ~~~~  664 (685)
                      ....
T Consensus       478 ~~~~  481 (876)
T 1qgr_A          478 AEAA  481 (876)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6553

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.23  E-value=1.9e-07  Score=76.56  Aligned_cols=45  Identities=18%  Similarity=0.335  Sum_probs=39.9

Q ss_pred             CCccCcCccccCCCceeccCccc-ccHHHHHHHHHcCCCCCCCCCccccCC
Q 039015          279 DDFTCPISLEIMKDPVTLSTGHT-YDRASILKWFRAGNSTCPKTGERLQSK  328 (685)
Q Consensus       279 ~~~~CpIc~~~m~dPv~~~cght-fcr~ci~~~~~~~~~~CP~c~~~l~~~  328 (685)
                      ++..|+||++.+.+|++++|||. ||..|+..|     ..||.|+..+...
T Consensus        17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~   62 (79)
T 2yho_A           17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEHV   62 (79)
T ss_dssp             HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCEE
T ss_pred             CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhCe
Confidence            45789999999999999999999 999999876     3899999988643

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.23  E-value=2.9e-06  Score=105.01  Aligned_cols=269  Identities=11%  Similarity=0.073  Sum_probs=183.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV  459 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~  459 (685)
                      .+..|+..+.+.+.+.|..|...|.+..+.+...-..-.....++.|+..|.+++..+|..|+.+|.+++..-... .  
T Consensus         7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~-~--   83 (1230)
T 1u6g_C            7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY-Q--   83 (1230)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH-H--
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH-H--
Confidence            4778889999999999999999998876532111111112345788999999999999999999999988643321 1  


Q ss_pred             hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHH-------HHhhcCCCcHHHHHHHhc-cCCHHHHHHHHHHHHH
Q 039015          460 ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYR-------KLIGENPEAIPALVDMVR-DGTDRSKKNALVAIFG  531 (685)
Q Consensus       460 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~-------~~i~~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~n  531 (685)
                      -...++.|+..|..+ +..+|..|+.+|..++..-...       ....  ...+|.|+..+. +++...+..|+.+|..
T Consensus        84 ~~~i~~~Ll~~l~d~-~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~--~~llp~L~~~l~~~~~~~~~~~al~~l~~  160 (1230)
T 1u6g_C           84 VETIVDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPASSGSALAANVC--KKITGRLTSAIAKQEDVSVQLEALDIMAD  160 (1230)
T ss_dssp             HHHHHHHHHHHTTCS-SSHHHHHHHHHHHHHHHHCC-----CCTHHHHH--HHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhCCCcccccchHHHHH--HHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence            133577788888777 7788988888888776422111       1111  347899999998 4778999999999999


Q ss_pred             hcCCCC--cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHH
Q 039015          532 LLMHSG--NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYC  609 (685)
Q Consensus       532 Ls~~~~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a  609 (685)
                      ++...+  ...  .-...++.|+..| .+++..++..|+.+|..++.....  .+. ...++.++..+....++..+..+
T Consensus       161 ~~~~~~~~l~~--~~~~ll~~l~~~L-~~~~~~vR~~a~~al~~l~~~~~~--~~~-~~~l~~l~~~L~~~~~~~~r~~a  234 (1230)
T 1u6g_C          161 MLSRQGGLLVN--FHPSILTCLLPQL-TSPRLAVRKRTIIALGHLVMSCGN--IVF-VDLIEHLLSELSKNDSMSTTRTY  234 (1230)
T ss_dssp             HHHHTCSSCTT--THHHHHHHHGGGG-GCSSHHHHHHHHHHHHHHTTTC------C-TTHHHHHHHHHHHTCSSCSCTTH
T ss_pred             HHHHhHhHHHH--HHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHhcCH--HHH-HHHHHHHHHHhccCCchhHHHHH
Confidence            974221  111  1123456667777 567789999999999999875332  121 12378888866654234566778


Q ss_pred             HHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015          610 VSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF  663 (685)
Q Consensus       610 ~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~  663 (685)
                      +.++..++...+.....   .-..+++.++..+++.++..++.|...+..+.+.
T Consensus       235 ~~~l~~l~~~~~~~~~~---~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~  285 (1230)
T 1u6g_C          235 IQCIAAISRQAGHRIGE---YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR  285 (1230)
T ss_dssp             HHHHHHHHHHSSGGGTT---SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhHHHHHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            88888888765442211   1146799999999988888888888777766654

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.23  E-value=2.8e-05  Score=92.00  Aligned_cols=275  Identities=14%  Similarity=0.097  Sum_probs=183.1

Q ss_pred             HHHHHHHHhcCC-CHHHHHHHHHHHHHHhhcCCch-h-hHHHhhCCHHHHHHhhcCC--CHHHHHHHHHHhhccccCcc-
Q 039015          380 LANFISDRLLEG-TSEEKNKVAYEVRLLTKSSIFN-R-SCLVEVGCIPSLLKLLSSK--DSSTQENAIAALLNLSKHCK-  453 (685)
Q Consensus       380 ~i~~Lv~~L~s~-~~~~~~~a~~~L~~La~~~~~~-r-~~i~~~G~ip~Lv~lL~s~--~~~~~~~A~~aL~nLs~~~~-  453 (685)
                      .++.|++.+.++ ++..+..|+..+..+++.-... + -.-.....++.++..|.++  +..++..|+.+|.++...-. 
T Consensus       135 ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~  214 (861)
T 2bpt_A          135 LMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKN  214 (861)
T ss_dssp             HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            578899999888 8999999999999998743211 1 0001123567777788776  78999999999988643211 


Q ss_pred             h-hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh--HHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHH
Q 039015          454 S-KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE--YRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIF  530 (685)
Q Consensus       454 ~-k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~  530 (685)
                      + .........++.+...+..+ +.++|..++.+|..++....  ....+.  ...++.++..+.+.++.++..|+.++.
T Consensus       215 ~~~~~~~~~~ll~~l~~~~~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~l~--~~l~~~~~~~~~~~~~~vr~~a~~~l~  291 (861)
T 2bpt_A          215 NMEREGERNYLMQVVCEATQAE-DIEVQAAAFGCLCKIMSKYYTFMKPYME--QALYALTIATMKSPNDKVASMTVEFWS  291 (861)
T ss_dssp             HHTSHHHHHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHHHGGGCHHHHH--HTHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HccChhHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            1 00011123566677777777 89999999999988875432  222222  146777788888888999999999998


Q ss_pred             HhcCCCC-----------------cH-HHHHhcCChHHHHHHhccC------CChhHHHHHHHHHHHHhcChhcHHHHHh
Q 039015          531 GLLMHSG-----------------NH-WRFLAAGAVPLLLNLLTSS------DSEELITDSLAVLATLAEKLDGTIAILH  586 (685)
Q Consensus       531 nLs~~~~-----------------n~-~~iv~~G~v~~Lv~lL~~~------~~~~~~~~al~~L~~La~~~~~~~~i~~  586 (685)
                      .++....                 +. ...+ ..+++.|+..|...      ++..++..+..+|..++..-.  ..+..
T Consensus       292 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~~  368 (861)
T 2bpt_A          292 TICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHILE  368 (861)
T ss_dssp             HHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGHH
T ss_pred             HHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHHH
Confidence            8875421                 00 1111 34678888888431      224677888888888876421  11111


Q ss_pred             cCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 039015          587 HGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFY  664 (685)
Q Consensus       587 ~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~  664 (685)
                       ..++.+.+.+.+. +...++.|+.+|..++...+........  ..+++.|+..+.+.++..+..|.+.+..+..+.
T Consensus       369 -~l~~~l~~~l~~~-~~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  442 (861)
T 2bpt_A          369 -PVLEFVEQNITAD-NWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMNDQSLQVKETTAWCIGRIADSV  442 (861)
T ss_dssp             -HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHcCCC-ChhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh
Confidence             1245555566666 8889999999999999765422222222  246889999999999999998888887777654

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.21  E-value=7.7e-06  Score=89.15  Aligned_cols=269  Identities=11%  Similarity=0.082  Sum_probs=177.5

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCC--CHHHHHHHHHHhhccccCcchhH-HH
Q 039015          382 NFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSK--DSSTQENAIAALLNLSKHCKSKS-MV  458 (685)
Q Consensus       382 ~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~--~~~~~~~A~~aL~nLs~~~~~k~-~i  458 (685)
                      ..|+..|.+.+... ..++..|..++........   ..+.+|.|+..+.++  +..+++.|+.+|..++.+-.... .-
T Consensus        93 ~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~---w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~  168 (462)
T 1ibr_B           93 NYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQ---WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD  168 (462)
T ss_dssp             HHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTC---CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGG
T ss_pred             HHHHHHhCCCCchh-hHHHHHHHHHHHHhccccc---cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHh
Confidence            44667777776667 7788888888874321111   257899999999888  89999999999999986431110 00


Q ss_pred             HhcCcHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCch-hHH-HHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC
Q 039015          459 VESGGLDFIVDMVKKGL-KVEARQHAAATLFYIASIE-EYR-KLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH  535 (685)
Q Consensus       459 ~~~g~i~~Lv~lL~~~~-~~e~~~~Aa~~L~~Ls~~~-~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~  535 (685)
                      .-...++.++..|.... +.++|..|+.++.++...- +.- ..... .-.++.|...+.++++..+..++.+|..++..
T Consensus       169 ~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~  247 (462)
T 1ibr_B          169 KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER-HFIMQVVCEATQCPDTRVRVAALQNLVKIMSL  247 (462)
T ss_dssp             GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            11347788888888763 6899999999999865321 111 00001 11466677777778889999999999998753


Q ss_pred             CCcH-HHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHH------------------HHh---cCChHHH
Q 039015          536 SGNH-WRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIA------------------ILH---HGALDMI  593 (685)
Q Consensus       536 ~~n~-~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~------------------i~~---~g~v~~L  593 (685)
                      .... ...+..++++.++..+ .+.++.++..|+..+..++........                  +.+   ...+|.+
T Consensus       248 ~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l  326 (462)
T 1ibr_B          248 YYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL  326 (462)
T ss_dssp             CGGGCTTTTTTTHHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHH
Confidence            3211 1112225677777777 567888999999999888765311111                  110   1124556


Q ss_pred             HHHhhcC------CChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 039015          594 MKILDSC------TSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHE  662 (685)
Q Consensus       594 v~lL~~~------~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~  662 (685)
                      ++.|...      .+...+..|+.+|..++..-++.+..      .+++.+...+.+.+.+.|..|...+..+..
T Consensus       327 ~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~------~~~~~l~~~l~~~~~~~r~aal~~l~~l~~  395 (462)
T 1ibr_B          327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP------HVLPFIKEHIKNPDWRYRDAAVMAFGCILE  395 (462)
T ss_dssp             HHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH------HHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred             HHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH------HHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence            6655421      13467889999999998765533222      346788888888888888888877777654

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.15  E-value=2.3e-06  Score=67.82  Aligned_cols=46  Identities=17%  Similarity=0.200  Sum_probs=40.8

Q ss_pred             CCCCccCcCccccCCCceeccCccc-ccHHHHHHHHHcCCCCCCCCCccccC
Q 039015          277 TPDDFTCPISLEIMKDPVTLSTGHT-YDRASILKWFRAGNSTCPKTGERLQS  327 (685)
Q Consensus       277 ~~~~~~CpIc~~~m~dPv~~~cght-fcr~ci~~~~~~~~~~CP~c~~~l~~  327 (685)
                      -.++..|+||++...++++++|||. ||..|+..     ...||+|++.+..
T Consensus        12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE   58 (68)
T ss_dssp             CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred             CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence            3557899999999999999999999 99999983     5789999998864

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.14  E-value=2.4e-05  Score=78.16  Aligned_cols=182  Identities=14%  Similarity=0.068  Sum_probs=136.9

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhcCCch-hhHHHhhCCHHHHHHhhc-CCCHHHHHHHHHHhhccccCcchhHHHHhc
Q 039015          384 ISDRLLEGTSEEKNKVAYEVRLLTKSSIFN-RSCLVEVGCIPSLLKLLS-SKDSSTQENAIAALLNLSKHCKSKSMVVES  461 (685)
Q Consensus       384 Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~-r~~i~~~G~ip~Lv~lL~-s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~  461 (685)
                      +.+.+.+.+...|..|+..|..+....+.. ...+  ...++.|...|. +.+..++..|+.+|..|+..-...-.-.-.
T Consensus        20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~   97 (242)
T 2qk2_A           20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS   97 (242)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred             HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            567788999999999999999998763321 1111  234777888884 889999999999999998532211111124


Q ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-c--
Q 039015          462 GGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG-N--  538 (685)
Q Consensus       462 g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-n--  538 (685)
                      ..++.|+..++.. +..+|..|..+|..+......       ...++.|...|++.++.++..++..|..+....+ .  
T Consensus        98 ~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~~-------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~  169 (242)
T 2qk2_A           98 ACVPSLLEKFKEK-KPNVVTALREAIDAIYASTSL-------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL  169 (242)
T ss_dssp             HHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence            5789999999988 899999999999998764331       2368888999999999999999999999654322 1  


Q ss_pred             HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC
Q 039015          539 HWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK  577 (685)
Q Consensus       539 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~  577 (685)
                      -..... ..+|.|+.+| .+.+..++..|..++..++..
T Consensus       170 ~~~~l~-~l~p~l~~~l-~D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          170 NKKLLK-LLTTSLVKTL-NEPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             CHHHHH-HHHHHHHHHH-TSSCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHH-HHHHHHHHHh-cCCChHHHHHHHHHHHHHHHH
Confidence            122232 4789999999 788899999999999998764

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.13  E-value=4.4e-07  Score=95.38  Aligned_cols=47  Identities=15%  Similarity=0.280  Sum_probs=42.5

Q ss_pred             CCCCCccCcCccccCCCceeccCccc-ccHHHHHHHHHcCCCCCCCCCccccC
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHT-YDRASILKWFRAGNSTCPKTGERLQS  327 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cght-fcr~ci~~~~~~~~~~CP~c~~~l~~  327 (685)
                      .+.+++.|+||++.+.+|++++|||+ ||+.|+..|     ..||.|+..+..
T Consensus       291 ~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~  338 (345)
T 3t6p_A          291 RLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG  338 (345)
T ss_dssp             HHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred             hCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence            45678999999999999999999999 999999987     689999998864

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.03  E-value=5e-06  Score=68.04  Aligned_cols=53  Identities=13%  Similarity=0.258  Sum_probs=43.4

Q ss_pred             CCCCCccCcCccccC--CCceeccCc-----ccccHHHHHHHHHcC-CCCCCCCCccccCC
Q 039015          276 LTPDDFTCPISLEIM--KDPVTLSTG-----HTYDRASILKWFRAG-NSTCPKTGERLQSK  328 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m--~dPv~~~cg-----htfcr~ci~~~~~~~-~~~CP~c~~~l~~~  328 (685)
                      ...++..|+||++-+  .+|++++|+     |.|...||.+|+... ..+||+|+..+...
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~   71 (80)
T 2d8s_A           11 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME   71 (80)
T ss_dssp             CCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred             CCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence            345567899999776  468888996     999999999999863 46999999988643

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=97.97  E-value=1.1e-06  Score=77.31  Aligned_cols=46  Identities=17%  Similarity=0.408  Sum_probs=0.4

Q ss_pred             CccCcCccccCCCce-----------------e-ccCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015          280 DFTCPISLEIMKDPV-----------------T-LSTGHTYDRASILKWFRAGNSTCPKTGERLQ  326 (685)
Q Consensus       280 ~~~CpIc~~~m~dPv-----------------~-~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~  326 (685)
                      +-.|+||++.|.+|.                 . .+|||.|+..||.+|+.. +.+||.|++...
T Consensus        48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~  111 (117)
T 4a0k_B           48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  111 (117)
T ss_dssp             C----------------------------------------------------------------
T ss_pred             CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence            358999999998752                 2 489999999999999998 789999998753

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.96  E-value=1.7e-05  Score=98.01  Aligned_cols=230  Identities=14%  Similarity=0.132  Sum_probs=159.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchh---
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSK---  455 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k---  455 (685)
                      ..++.|++.|.+.++++|..|+.+|..++.....  ..+  ...++.|+..|.+++..++..|+.+|..++..-...   
T Consensus        48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~  123 (1230)
T 1u6g_C           48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG  123 (1230)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccc
Confidence            4577888889889999999999999999864332  111  235778888888888899999999998887443221   


Q ss_pred             ---HHHHhcCcHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCch--hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHH
Q 039015          456 ---SMVVESGGLDFIVDMVKK-GLKVEARQHAAATLFYIASIE--EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAI  529 (685)
Q Consensus       456 ---~~i~~~g~i~~Lv~lL~~-~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL  529 (685)
                         ..-.-...++.|+..+.. + +...+..|+.+|..++...  .....+   ...++.|+..|.++++.+++.|+.+|
T Consensus       124 ~~~~~~~~~~llp~L~~~l~~~~-~~~~~~~al~~l~~~~~~~~~~l~~~~---~~ll~~l~~~L~~~~~~vR~~a~~al  199 (1230)
T 1u6g_C          124 SALAANVCKKITGRLTSAIAKQE-DVSVQLEALDIMADMLSRQGGLLVNFH---PSILTCLLPQLTSPRLAVRKRTIIAL  199 (1230)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSCCS-CHHHHHHHHHHHHHHHHHTCSSCTTTH---HHHHHHHGGGGGCSSHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHHhHhHHHHHH---HHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence               111234678999999984 5 8899999999999987421  111111   23677788888888889999999999


Q ss_pred             HHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHh--cCChHHHHHHhhcCCChhHHH
Q 039015          530 FGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILH--HGALDMIMKILDSCTSRAGKE  607 (685)
Q Consensus       530 ~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~--~g~v~~Lv~lL~~~~s~~~~e  607 (685)
                      ..++...+..  + -...++.|+..|....+...+..++.++..++.... . .+..  ...++.++..+.+. ++.+++
T Consensus       200 ~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~-~-~~~~~l~~l~~~ll~~l~d~-~~~vR~  273 (1230)
T 1u6g_C          200 GHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAG-H-RIGEYLEKIIPLVVKFCNVD-DDELRE  273 (1230)
T ss_dssp             HHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSS-G-GGTTSCTTHHHHHHHHHSSC-CTTTHH
T ss_pred             HHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhH-H-HHHHHHHHHHHHHHHHhcCC-CHHHHH
Confidence            9998755432  1 224578888888554334555667777777765311 1 1211  12378888888776 889999


Q ss_pred             HHHHHHHHHhccCcH
Q 039015          608 YCVSLLLALCINGGA  622 (685)
Q Consensus       608 ~a~~~L~~L~~~~~~  622 (685)
                      .++.++..++...++
T Consensus       274 ~a~~~l~~l~~~~~~  288 (1230)
T 1u6g_C          274 YCIQAFESFVRRCPK  288 (1230)
T ss_dssp             HHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHChH
Confidence            999999998876544

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.87  E-value=3.2e-06  Score=76.19  Aligned_cols=120  Identities=10%  Similarity=0.095  Sum_probs=90.7

Q ss_pred             hCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHH
Q 039015          420 VGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKL  499 (685)
Q Consensus       420 ~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~  499 (685)
                      .+.++.|+.+|.++++.++..|+.+|.++..           ..++.|+..|++. ++.+|..|+.+|.++..       
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~-------   71 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD-------   71 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS-------
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCC-CHHHHHHHHHHHHhcCC-------
Confidence            4678889999999999999999999887642           1368899999987 99999999999988752       


Q ss_pred             hhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHH
Q 039015          500 IGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLAT  573 (685)
Q Consensus       500 i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~  573 (685)
                          .++++.|+.+|.++++.++..|+.+|.++.          +..+++.|+.+| .+++..++..|..+|..
T Consensus        72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l-~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLA-ETGTGFARKVAVNYLET  130 (131)
T ss_dssp             ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHT-TSCCTHHHHHHHHHGGG
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHH-hCCCHHHHHHHHHHHHh
Confidence                346899999999999999999999999884          234688899999 57778888888877754

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.86  E-value=2.2e-06  Score=77.30  Aligned_cols=119  Identities=15%  Similarity=0.118  Sum_probs=92.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV  459 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~  459 (685)
                      .++.|+..|.+.++.+|..|+..|..+..            ..++.|+.+|.++++.++..|+++|.++..         
T Consensus        13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~---------   71 (131)
T 1te4_A           13 GLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD---------   71 (131)
T ss_dssp             --------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS---------
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC---------
Confidence            46778888988888888888877664421            137999999999999999999999998762         


Q ss_pred             hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 039015          460 ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGL  532 (685)
Q Consensus       460 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL  532 (685)
                       ..+++.|+..|+.+ ++.+|..|+.+|..+.          . ..+++.|+.++++.++.++..|+.+|.++
T Consensus        72 -~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~----------~-~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           72 -ERAVEPLIKLLEDD-SGFVRSGAARSLEQIG----------G-ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             -HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHC----------S-HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             -HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC----------c-HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence             34689999999888 8999999999998874          2 45789999999988899999999988653

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.83  E-value=0.0019  Score=73.79  Aligned_cols=254  Identities=15%  Similarity=0.122  Sum_probs=165.8

Q ss_pred             hHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchh
Q 039015          378 KLLANFISDRL--LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSK  455 (685)
Q Consensus       378 ~~~i~~Lv~~L--~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k  455 (685)
                      +..++.+.+.|  .+.++-+|.+|+.++..+.+.+++.   +-..++++.|..+|.+.|+.++.+|+.+|..++.++.. 
T Consensus       145 ~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~-  220 (621)
T 2vgl_A          145 EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE-  220 (621)
T ss_dssp             HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH-
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH-
Confidence            44567778888  7889999999999999999866542   22258999999999999999999999999998765432 


Q ss_pred             HHHHhcCcHHHHHHHhc----CC-C-----------CHHHHHHHHHHHHHhcCc--hhHHHHhhcCCCcHHHHHHHhcc-
Q 039015          456 SMVVESGGLDFIVDMVK----KG-L-----------KVEARQHAAATLFYIASI--EEYRKLIGENPEAIPALVDMVRD-  516 (685)
Q Consensus       456 ~~i~~~g~i~~Lv~lL~----~~-~-----------~~e~~~~Aa~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~lL~~-  516 (685)
                       .+  ...++.+++.|.    .+ .           ++-.+.....+|..++..  ++.+..+.+   .++.++..+.+ 
T Consensus       221 -~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~---~L~~il~~~~~~  294 (621)
T 2vgl_A          221 -EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE---CLETILNKAQEP  294 (621)
T ss_dssp             -HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH---HHHHHHHHHHSC
T ss_pred             -HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH---HHHHHHHhhccC
Confidence             11  134455554443    22 1           356788888888888753  244444433   44444443321 


Q ss_pred             --------CCH--HHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHh
Q 039015          517 --------GTD--RSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILH  586 (685)
Q Consensus       517 --------~~~--~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~  586 (685)
                              .+.  .+.-.|+.++..+...+    .++. .++..|..+| .+.+..++-.|+..|..++........+. 
T Consensus       295 ~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~----~~~~-~~~~~L~~~L-~~~~~niry~aL~~l~~l~~~~~~~~~~~-  367 (621)
T 2vgl_A          295 PKSKKVQHSNAKNAVLFEAISLIIHHDSEP----NLLV-RACNQLGQFL-QHRETNLRYLALESMCTLASSEFSHEAVK-  367 (621)
T ss_dssp             CSCSSHHHHHHHHHHHHHHHHHHHHHCCCH----HHHH-HHHHHHHHHS-SCSCHHHHHHHHHHHHHHTTCTTTHHHHH-
T ss_pred             cccccccccchHHHHHHHHHHHHHhcCCcH----HHHH-HHHHHHHHHh-cCCCcchHHHHHHHHHHHHhccCcHHHHH-
Confidence                    122  55567778888875322    1222 3567788888 56678899999999999987543223332 


Q ss_pred             cCChHHHHHHhh-cCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 039015          587 HGALDMIMKILD-SCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRI  659 (685)
Q Consensus       587 ~g~v~~Lv~lL~-~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~  659 (685)
                       .-...++..++ +. ++.++..++.+|..++..  .++...       +.-|...+.+.+...++.+..-+..
T Consensus       368 -~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~~--~Nv~~I-------v~eL~~yl~~~d~~~~~~~v~~I~~  430 (621)
T 2vgl_A          368 -THIETVINALKTER-DVSVRQRAVDLLYAMCDR--SNAQQI-------VAEMLSYLETADYSIREEIVLKVAI  430 (621)
T ss_dssp             -TTHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCH--HHHHHH-------HHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHhccCC-CHhHHHHHHHHHHHHcCh--hhHHHH-------HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence             23566777777 66 888999999999999865  333333       2256666666666655554433333

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.82  E-value=0.0011  Score=75.81  Aligned_cols=256  Identities=11%  Similarity=0.091  Sum_probs=174.2

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhh--cCCCHHHHHHHHHHhhccccCcchh
Q 039015          378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLL--SSKDSSTQENAIAALLNLSKHCKSK  455 (685)
Q Consensus       378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL--~s~~~~~~~~A~~aL~nLs~~~~~k  455 (685)
                      ...+..+.+.|.+.++-.+.-|+..|..+..  ++    +.+ ..+|.+.++|  .+.++-++..|+.++..+....+. 
T Consensus       110 ~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e----~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~-  181 (621)
T 2vgl_A          110 RLINNAIKNDLASRNPTFMGLALHCIANVGS--RE----MAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD-  181 (621)
T ss_dssp             HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HH----HHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG-
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHhhccCC--HH----HHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh-
Confidence            4568888999999999999999999988853  22    332 4578888999  889999999999999998864332 


Q ss_pred             HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhc----cC-------------C
Q 039015          456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR----DG-------------T  518 (685)
Q Consensus       456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~----~~-------------~  518 (685)
                       .+-..+.++.+..+|... ++.++.+|+.+|..++..+..  .+   ...+|.+++.|.    .+             +
T Consensus       182 -~~~~~~~~~~l~~lL~d~-d~~V~~~a~~~l~~i~~~~~~--~~---~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~  254 (621)
T 2vgl_A          182 -LVPMGDWTSRVVHLLNDQ-HLGVVTAATSLITTLAQKNPE--EF---KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPA  254 (621)
T ss_dssp             -GCCCCSCHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCHH--HH---TTHHHHHHHHHHHHHHCCSSSCSTTEETTEES
T ss_pred             -hcCchhHHHHHHHHhCCC-CccHHHHHHHHHHHHHHhChH--HH---HHHHHHHHHHHHHHHhCCCCCccchhhcCCCC
Confidence             222358999999999877 899999999999998764421  11   235555555443    22             5


Q ss_pred             HHHHHHHHHHHHHhcCCCC--cHHHHHhcCChHHHHHHhccCC----------ChhHHHHHHHHHHHHhcChhcHHHHHh
Q 039015          519 DRSKKNALVAIFGLLMHSG--NHWRFLAAGAVPLLLNLLTSSD----------SEELITDSLAVLATLAEKLDGTIAILH  586 (685)
Q Consensus       519 ~~~~~~A~~aL~nLs~~~~--n~~~iv~~G~v~~Lv~lL~~~~----------~~~~~~~al~~L~~La~~~~~~~~i~~  586 (685)
                      +-++...+..|..++..++  .+..+.+  .++.++..+...+          ...+.-+|+.++..+...++-..    
T Consensus       255 ~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~----  328 (621)
T 2vgl_A          255 PWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV----  328 (621)
T ss_dssp             HHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH----
T ss_pred             chHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH----
Confidence            6788888888888775332  2333332  2333333321111          22677778888888865443222    


Q ss_pred             cCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHh-cCChHHHHHHHHHHHHHH
Q 039015          587 HGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLS-QGSSRASKKASALIRILH  661 (685)
Q Consensus       587 ~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~-~g~~~~k~~A~~lL~~l~  661 (685)
                       .++..|..++.+. ++.++..|+..|..++...+.  ...+..   ....++..+. +.+..++++|..+|..+.
T Consensus       329 -~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~--~~~~~~---~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~  397 (621)
T 2vgl_A          329 -RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS--HEAVKT---HIETVINALKTERDVSVRQRAVDLLYAMC  397 (621)
T ss_dssp             -HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT--HHHHHT---THHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc--HHHHHH---HHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence             2356788888766 889999999999999987542  112222   2567777777 778888888777765553

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.81  E-value=7e-05  Score=75.39  Aligned_cols=189  Identities=11%  Similarity=0.097  Sum_probs=134.1

Q ss_pred             HHHhcCCCHHHHHHHHHHHHH-HhhcCCchhhHHHh-hCCHHHHHHhh-cCCCHHHHHHHHHHhhccccCcc-hhHH-HH
Q 039015          385 SDRLLEGTSEEKNKVAYEVRL-LTKSSIFNRSCLVE-VGCIPSLLKLL-SSKDSSTQENAIAALLNLSKHCK-SKSM-VV  459 (685)
Q Consensus       385 v~~L~s~~~~~~~~a~~~L~~-La~~~~~~r~~i~~-~G~ip~Lv~lL-~s~~~~~~~~A~~aL~nLs~~~~-~k~~-i~  459 (685)
                      -+.+.|.++..|..|+..|.. +..+.+.....-.+ ...+..|...| +..+..++..|+.+|..|+.+-. ..-. =.
T Consensus        22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y  101 (249)
T 2qk1_A           22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDY  101 (249)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence            466789999999999999999 87543321100111 13466777888 67899999999999999984322 1110 11


Q ss_pred             hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHh-hcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 039015          460 ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLI-GENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGN  538 (685)
Q Consensus       460 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i-~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n  538 (685)
                      -.-.++.++..++.. ...++..+..+|..++..-+. ... ..-...++.|+..|++.++.++..++.+|..+......
T Consensus       102 ~~~llp~ll~~l~dk-k~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~  179 (249)
T 2qk1_A          102 VSLVFTPLLDRTKEK-KPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD  179 (249)
T ss_dssp             HHHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence            133688999999887 788999888888887653211 111 10024788899999999999999999999988854432


Q ss_pred             H-HH---HHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 039015          539 H-WR---FLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE  576 (685)
Q Consensus       539 ~-~~---iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~  576 (685)
                      . ..   .+....+|.|.++| .+.+..++..|..+|..++.
T Consensus       180 ~~~~l~~~l~~~iip~l~~~l-~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          180 GYSTLQRYLKDEVVPIVIQIV-NDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CSHHHHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence            1 22   22356899999999 78889999999999998865

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=97.75  E-value=0.00025  Score=70.59  Aligned_cols=185  Identities=15%  Similarity=0.108  Sum_probs=133.6

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhcCc-hhHHHHhhcCCCcHHHHHHHhc-cCCHHHHHHHHHHHHHhcCCCCcHHHHH
Q 039015          466 FIVDMVKKGLKVEARQHAAATLFYIASI-EEYRKLIGENPEAIPALVDMVR-DGTDRSKKNALVAIFGLLMHSGNHWRFL  543 (685)
Q Consensus       466 ~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~n~~~iv  543 (685)
                      .+.+.+.+. ++..|..|+..|..+... +...  -......++.|..++. +.+..++..|+.+|..|+..-...-.-.
T Consensus        19 ~l~~~l~s~-~w~~R~~a~~~L~~l~~~~~~~~--~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~   95 (242)
T 2qk2_A           19 DFYDKLEEK-KWTLRKESLEVLEKLLTDHPKLE--NGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY   95 (242)
T ss_dssp             THHHHHTCS-SHHHHHHHHHHHHHHHHHCSSBC--CCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             HHHhhhccC-CHHHHHHHHHHHHHHHccCCCCC--CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            466777777 899999999999988764 2211  0111246788888884 8889999999999999984322111112


Q ss_pred             hcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccC-cH
Q 039015          544 AAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCING-GA  622 (685)
Q Consensus       544 ~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~-~~  622 (685)
                      -..+++.|+..+ .+.+..+++.|..+|..++.... -..     .++.+...+++. ++.++..++..|..+.... ++
T Consensus        96 ~~~ilp~ll~~l-~d~~~~vr~~a~~aL~~~~~~~~-~~~-----ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~  167 (242)
T 2qk2_A           96 ASACVPSLLEKF-KEKKPNVVTALREAIDAIYASTS-LEA-----QQESIVESLSNK-NPSVKSETALFIARALTRTQPT  167 (242)
T ss_dssp             HHHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTSC-HHH-----HHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHcCC-HHH-----HHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCC
Confidence            233788899998 67788999999999999987532 111     256777788887 9999999999999965443 22


Q ss_pred             H-HHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 039015          623 N-VVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFY  664 (685)
Q Consensus       623 ~-~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~  664 (685)
                      . ....+   ..++|.|..++.+....+|..|...+..+....
T Consensus       168 ~~~~~~l---~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v  207 (242)
T 2qk2_A          168 ALNKKLL---KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM  207 (242)
T ss_dssp             GCCHHHH---HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHH---HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence            1 12222   235889999999999999999998888877654

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=97.70  E-value=0.00059  Score=66.33  Aligned_cols=223  Identities=17%  Similarity=0.125  Sum_probs=161.1

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH-HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHH
Q 039015          422 CIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV-VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKL  499 (685)
Q Consensus       422 ~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i-~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~  499 (685)
                      .+..|..+|...|..++.+|+.+|-++-+.-+..... .-...++.++.++++. +..+...|+.+|..|-.+- -....
T Consensus        34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~-dEkval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQE-NEKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCST-THHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcCCCCCHHH
Confidence            5678899999999999999999999998775442222 2356799999999888 9999999999999886544 23344


Q ss_pred             hhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChh
Q 039015          500 IGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLD  579 (685)
Q Consensus       500 i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~  579 (685)
                      +..   .+.+|.++++++++-....|+..|..|..-...+      +++..+..++ .+.+..++..++.+|.+++...+
T Consensus       113 y~K---l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S~  182 (265)
T 3b2a_A          113 FLK---AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELV-VSPDLYTKVAGFCLFLNMLNSSA  182 (265)
T ss_dssp             HHH---HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGCS
T ss_pred             HHH---HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHH-hCCChhHHHHHHHHHHHhhcccC
Confidence            434   6789999999999999999999999983322222      2456788888 78899999999999999988432


Q ss_pred             cHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccC-cHHHHHHHHhcCCcHHHHHHHH-hcCChHHHHHHHHHH
Q 039015          580 GTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCING-GANVVALLVKSPSLMGSLYSLL-SQGSSRASKKASALI  657 (685)
Q Consensus       580 ~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~-~~~~~~~l~~~~g~i~~L~~Ll-~~g~~~~k~~A~~lL  657 (685)
                      ...-+  .+.+..+-.++++. ++...+.|+.+|..+.... .++....+..   +....-.+. ..|.|..+.+|.-..
T Consensus       183 D~~i~--~~I~~eI~elL~~e-D~~l~e~aLd~Le~ils~pi~~~~~~~~~~---~~~~v~~l~~~~~~~~~~~ka~~v~  256 (265)
T 3b2a_A          183 DSGHL--TLILDEIPSLLQND-NEFIVELALDVLEKALSFPLLENVKIELLK---ISRIVDGLVYREGAPIIRLKAKKVS  256 (265)
T ss_dssp             SCCCG--GGTTTTHHHHHTCS-CHHHHHHHHHHHHHHTTSCCCSCCHHHHHH---HHHHHHHGGGCSSCHHHHHHHHHHH
T ss_pred             CHHHH--HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCcccHhHHHHHHH---HHHHHHHHHHhcCChhHHHHHHHHH
Confidence            11111  12234455678887 9999999999999988753 1222222221   122333444 578888888888776


Q ss_pred             HHHH
Q 039015          658 RILH  661 (685)
Q Consensus       658 ~~l~  661 (685)
                      ..+.
T Consensus       257 ~~le  260 (265)
T 3b2a_A          257 DLID  260 (265)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.64  E-value=0.00074  Score=69.57  Aligned_cols=153  Identities=14%  Similarity=0.119  Sum_probs=125.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHH-HhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRL-LTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV  458 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~-La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i  458 (685)
                      .+..++.+|.+++.+.++.++..|+. +. .+..--..|++.||+..|+++....+..++..++++|.+|-.+.++-..+
T Consensus       119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q-~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gv  197 (339)
T 3dad_A          119 RVNAILEKLYSSSGPELRRSLFSLKQIFQ-EDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGV  197 (339)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHH-TCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHhh-cchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccch
Confidence            36677788888899999999999998 55 47788888999999999999999999999999999999999999998777


Q ss_pred             H-hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh-HHHHhhc---------CCCcHHHHHHHhc---cCCHHHHHH
Q 039015          459 V-ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE-YRKLIGE---------NPEAIPALVDMVR---DGTDRSKKN  524 (685)
Q Consensus       459 ~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~---------~~g~i~~Lv~lL~---~~~~~~~~~  524 (685)
                      + ....|.-|..++.+. ...+...|..+|..++...+ +...+..         ..--+..|+.+|+   +++.+.+.+
T Consensus       198 vs~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~  276 (339)
T 3dad_A          198 VAHSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY  276 (339)
T ss_dssp             HHCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred             hCCHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence            7 567899999999976 89999999999999976653 2222221         0123789999997   678899999


Q ss_pred             HHHHHHHhcC
Q 039015          525 ALVAIFGLLM  534 (685)
Q Consensus       525 A~~aL~nLs~  534 (685)
                      |...|-.+..
T Consensus       277 amtLIN~lL~  286 (339)
T 3dad_A          277 TVTLINKTLA  286 (339)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8887766653

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.45  E-value=0.0068  Score=71.06  Aligned_cols=235  Identities=12%  Similarity=0.085  Sum_probs=154.9

Q ss_pred             HHHHHHHHhcCCC--------HHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccC
Q 039015          380 LANFISDRLLEGT--------SEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKH  451 (685)
Q Consensus       380 ~i~~Lv~~L~s~~--------~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~  451 (685)
                      .+..|...|.+.+        +.++..|+-.|....-++  .+.     .+++.|..+|.+++..+.+.|+-+|.-+-..
T Consensus       430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS--~~e-----ev~e~L~~~L~dd~~~~~~~AalALGli~vG  502 (963)
T 4ady_A          430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGS--ANI-----EVYEALKEVLYNDSATSGEAAALGMGLCMLG  502 (963)
T ss_dssp             HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTC--CCH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCC--CCH-----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc
Confidence            4566666665444        456667777777654322  122     2356788888777776676777776655333


Q ss_pred             cchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhcc-CCHHHHHHHHHHHH
Q 039015          452 CKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRD-GTDRSKKNALVAIF  530 (685)
Q Consensus       452 ~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~  530 (685)
                      ..|.      .++..|++.+....+..++..++-.|..+...        . ...++.+++.|.. .++-++..|+.++.
T Consensus       503 Tgn~------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g--------~-~e~~~~li~~L~~~~dp~vRygaa~alg  567 (963)
T 4ady_A          503 TGKP------EAIHDMFTYSQETQHGNITRGLAVGLALINYG--------R-QELADDLITKMLASDESLLRYGGAFTIA  567 (963)
T ss_dssp             CCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT--------C-GGGGHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             cCCH------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC--------C-hHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            3322      23566666655444778888887777766432        2 4568888888875 55677777777776


Q ss_pred             HhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHH-HhhcCCChhHHHHH
Q 039015          531 GLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMK-ILDSCTSRAGKEYC  609 (685)
Q Consensus       531 nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~-lL~~~~s~~~~e~a  609 (685)
                      --....+|..      +|+.|++.+.++.++.++..|+..|+.++....        ..++.++. +++.+ ++.++..|
T Consensus       568 lAyaGTGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~-d~~VR~gA  632 (963)
T 4ady_A          568 LAYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSH-NAHVRCGT  632 (963)
T ss_dssp             HHTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCS-CHHHHHHH
T ss_pred             HHhcCCCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcC-CHHHHHHH
Confidence            5555666643      466688887677788899999999998876532        34777887 55556 99999999


Q ss_pred             HHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 039015          610 VSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRIL  660 (685)
Q Consensus       610 ~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l  660 (685)
                      +.+|..+|..++..   .      ++..|..++++.++.+++.|.-.|..+
T Consensus       633 alALGli~aGn~~~---~------aid~L~~L~~D~d~~Vrq~Ai~ALG~I  674 (963)
T 4ady_A          633 AFALGIACAGKGLQ---S------AIDVLDPLTKDPVDFVRQAAMIALSMI  674 (963)
T ss_dssp             HHHHHHHTSSSCCH---H------HHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCcH---H------HHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence            99999999776431   1      134666677777777776666555544

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.41  E-value=0.0043  Score=63.91  Aligned_cols=153  Identities=14%  Similarity=0.168  Sum_probs=121.7

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHH-hcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHh
Q 039015          508 PALVDMVRDGTDRSKKNALVAIFG-LLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILH  586 (685)
Q Consensus       508 ~~Lv~lL~~~~~~~~~~A~~aL~n-Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~  586 (685)
                      ..+++-|.+++.+.++.++.-|.. +..+......++..+++..|+.+. ...+.....-++.+|.+|-.+..|...|+.
T Consensus       121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi-~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs  199 (339)
T 3dad_A          121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVG-AAADHNYQSYILRALGQLMLFVDGMLGVVA  199 (339)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHH-TTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHH-HhcChHHHHHHHHHHHHHHhccccccchhC
Confidence            344566677888889999999988 667788999999999999999999 566889999999999999999999988887


Q ss_pred             cC-ChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHH---HHHH-----hcCCcHHHHHHHHh---cCChHHHHHHH
Q 039015          587 HG-ALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVV---ALLV-----KSPSLMGSLYSLLS---QGSSRASKKAS  654 (685)
Q Consensus       587 ~g-~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~---~~l~-----~~~g~i~~L~~Ll~---~g~~~~k~~A~  654 (685)
                      +. .|..+..++.+. .+.+...|+++|..+|..++....   +.+.     .+.-....|+.+++   +++...+.+|-
T Consensus       200 ~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          200 HSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             CHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence            65 488888888865 889999999999999987642221   1111     11224678888997   67888999999


Q ss_pred             HHHHHHHH
Q 039015          655 ALIRILHE  662 (685)
Q Consensus       655 ~lL~~l~~  662 (685)
                      +|++-+-.
T Consensus       279 tLIN~lL~  286 (339)
T 3dad_A          279 TLINKTLA  286 (339)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            98876643

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.39  E-value=0.00017  Score=57.64  Aligned_cols=50  Identities=14%  Similarity=0.333  Sum_probs=40.2

Q ss_pred             CCCccCcCccccCCCceec-cCcccccHHHHHHHHHcC-CCCCCCCCccccC
Q 039015          278 PDDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRAG-NSTCPKTGERLQS  327 (685)
Q Consensus       278 ~~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~-~~~CP~c~~~l~~  327 (685)
                      ...-.|.||.+.+..-..- .|+|.|...||.+||+.. ..+||.|+.....
T Consensus        13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH   64 (74)
T ss_dssp             SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred             CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence            4457899999998754433 799999999999999862 3799999987653

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.37  E-value=0.0014  Score=65.70  Aligned_cols=190  Identities=12%  Similarity=0.097  Sum_probs=130.7

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHH-hcCc-hhHHHHhhcCCCcHHHHHHHh-ccCCHHHHHHHHHHHHHhcCCC---CcH-
Q 039015          467 IVDMVKKGLKVEARQHAAATLFY-IASI-EEYRKLIGENPEAIPALVDMV-RDGTDRSKKNALVAIFGLLMHS---GNH-  539 (685)
Q Consensus       467 Lv~lL~~~~~~e~~~~Aa~~L~~-Ls~~-~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~~~---~n~-  539 (685)
                      +...+.+. ++..|..|+..|.. +... ++.....+.....+..|...+ ++.+..++..|+.+|..|+..-   +.. 
T Consensus        21 f~~~l~s~-~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERITSS-KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHHTCS-SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHhhcC-CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            34556677 89999999999998 8642 221100111123677888888 6778899999999999998422   211 


Q ss_pred             HHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHh-c-CChHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 039015          540 WRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILH-H-GALDMIMKILDSCTSRAGKEYCVSLLLALC  617 (685)
Q Consensus       540 ~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~-~-g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~  617 (685)
                      ...  .-++|.++..+ .+....+++.+..+|..++.+-.- ..... - ..++.|...|++. ++.+++.++.+|..++
T Consensus       100 ~y~--~~llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~  174 (249)
T 2qk1_A          100 DYV--SLVFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASM  174 (249)
T ss_dssp             HHH--HHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHH
Confidence            111  12688899998 566788889988888888763210 00000 0 1246677788887 9999999999999998


Q ss_pred             ccCcH---HHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 039015          618 INGGA---NVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFY  664 (685)
Q Consensus       618 ~~~~~---~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~  664 (685)
                      ...+.   ..... .. ..++|.|..++.+.++.+|..|...+..+.+.-
T Consensus       175 ~~~~~~~~~l~~~-l~-~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~v  222 (249)
T 2qk1_A          175 KEEKDGYSTLQRY-LK-DEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF  222 (249)
T ss_dssp             HHCCSCSHHHHHH-HT-TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCcchhHHHH-HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            76542   22222 21 367999999999999999999999888876653

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.28  E-value=0.014  Score=69.22  Aligned_cols=267  Identities=14%  Similarity=0.138  Sum_probs=176.3

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCc-hhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccC-cchhHH
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIF-NRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKH-CKSKSM  457 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~-~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~-~~~k~~  457 (685)
                      .+..|.+.+......  ..|+..+..++..... ....-.-.+.+|.++..+.+.+..++..|-.++..+... +.+.. 
T Consensus        55 ~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-  131 (986)
T 2iw3_A           55 FFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-  131 (986)
T ss_dssp             HHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-
T ss_pred             HHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-
Confidence            456666666433222  7888889999854422 111222226789999999888889998888777666422 22221 


Q ss_pred             HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhc-CCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 039015          458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGE-NPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS  536 (685)
Q Consensus       458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~  536 (685)
                         ...+|.|+..|.++..+..+..|..++..|+...  ...++. -+..||.+-+.+-+..+++++.|..++-.+|..-
T Consensus       132 ---~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~  206 (986)
T 2iw3_A          132 ---KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETV  206 (986)
T ss_dssp             ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGC
T ss_pred             ---HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcC
Confidence               4568899999986647999999999999998643  222322 1457888888888888999999999999998766


Q ss_pred             CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHH
Q 039015          537 GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLAL  616 (685)
Q Consensus       537 ~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L  616 (685)
                      +|+..   ...+|.|++.+. ++  .-..+++..|..-..-.+.-..-+. =-+|.|.+-|+.. +...+..++-++-|+
T Consensus       207 ~n~d~---~~~~~~~~~~~~-~p--~~~~~~~~~l~~~tfv~~v~~~~l~-~~~p~l~r~l~~~-~~~~~r~~~~~~~n~  278 (986)
T 2iw3_A          207 DNKDI---ERFIPSLIQCIA-DP--TEVPETVHLLGATTFVAEVTPATLS-IMVPLLSRGLNER-ETGIKRKSAVIIDNM  278 (986)
T ss_dssp             CCTTT---GGGHHHHHHHHH-CT--THHHHHHHHHTTCCCCSCCCHHHHH-HHHHHHHHHHTSS-SHHHHHHHHHHHHHH
T ss_pred             CCcch---hhhHHHHHHHhc-Ch--hhhHHHHHHhhcCeeEeeecchhHH-HHHHHHHhhhccC-cchhheeeEEEEcch
Confidence            66642   346888999993 33  2245554444433222221111100 0146666666665 778889999999999


Q ss_pred             hcc--CcHHHHHHHHhcCCcHHHHHHHHhc-CChHHHHHHHHHHHHHHHhhc
Q 039015          617 CIN--GGANVVALLVKSPSLMGSLYSLLSQ-GSSRASKKASALIRILHEFYE  665 (685)
Q Consensus       617 ~~~--~~~~~~~~l~~~~g~i~~L~~Ll~~-g~~~~k~~A~~lL~~l~~~~~  665 (685)
                      |.-  ++..+...+   +.++|.|...... ..|.+++.|...+..|.+...
T Consensus       279 ~~lv~~~~~~~~f~---~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~  327 (986)
T 2iw3_A          279 CKLVEDPQVIAPFL---GKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN  327 (986)
T ss_dssp             HTTCCCHHHHHHHH---TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhcCCHHHHhhhh---hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence            974  333443333   5678887776655 478999999999999988644

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=97.15  E-value=0.00036  Score=53.51  Aligned_cols=48  Identities=21%  Similarity=0.335  Sum_probs=39.9

Q ss_pred             CCccCcCccccCCCceeccCc--c---cccHHHHHHHHHc-CCCCCCCCCcccc
Q 039015          279 DDFTCPISLEIMKDPVTLSTG--H---TYDRASILKWFRA-GNSTCPKTGERLQ  326 (685)
Q Consensus       279 ~~~~CpIc~~~m~dPv~~~cg--h---tfcr~ci~~~~~~-~~~~CP~c~~~l~  326 (685)
                      +.-.|.||++-..+|.+.||.  +   .|.+.|+.+|+.. ++.+||+|+..+.
T Consensus         5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            456899999888888888865  3   7999999999984 6789999998765

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.14  E-value=0.0003  Score=58.61  Aligned_cols=46  Identities=15%  Similarity=0.218  Sum_probs=39.1

Q ss_pred             cCcCccccCCCce-eccCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015          282 TCPISLEIMKDPV-TLSTGHTYDRASILKWFRAGNSTCPKTGERLQS  327 (685)
Q Consensus       282 ~CpIc~~~m~dPv-~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~  327 (685)
                      .|++|.-.+..-. ++||+|.||..|+..|...+..+||.|+.++..
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            5888887777543 569999999999999998888999999988763

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.12  E-value=0.0051  Score=64.75  Aligned_cols=239  Identities=11%  Similarity=0.065  Sum_probs=132.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV  458 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i  458 (685)
                      ..+..|.+.+.++++-.|-.|++.|..+..  ++.-+     ...+.+.+.|.+.++-++..|+-+...|......  .+
T Consensus       104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe--~v  174 (355)
T 3tjz_B          104 IVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD--VV  174 (355)
T ss_dssp             GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH--HH
T ss_pred             HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH--HH
Confidence            457889999999999999999999998874  33222     2356677888899999999999999888754432  22


Q ss_pred             HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccC---CHHHHHHHHHHHHHhcCC
Q 039015          459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDG---TDRSKKNALVAIFGLLMH  535 (685)
Q Consensus       459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~A~~aL~nLs~~  535 (685)
                        .+.+..+-.++... ++.+..+|.++|..+...+.         .++..|+.-+..+   ++-+...-+..+..++..
T Consensus       175 --~~~~~~l~~ll~d~-n~~V~~~Al~lL~ei~~~d~---------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~  242 (355)
T 3tjz_B          175 --KRWVNEAQEAASSD-NIMVQYHALGLLYHVRKNDR---------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLED  242 (355)
T ss_dssp             --HTTHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---
T ss_pred             --HHHHHHHHHHhcCC-CccHHHHHHHHHHHHHhhch---------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccc
Confidence              36889999999888 89999999999999976541         1355556655443   354444444444444332


Q ss_pred             CCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHH
Q 039015          536 SGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLA  615 (685)
Q Consensus       536 ~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~  615 (685)
                      ++   .-.....++.|...| .+.++.+.-+|+.++..+...+.   .+. ..++..|..++.++ ++.++-.|+..|..
T Consensus       243 d~---~~~~~~~~~~l~~~L-~~~~~aVvyEa~k~I~~l~~~~~---~~~-~~a~~~L~~fLss~-d~niryvaLr~L~~  313 (355)
T 3tjz_B          243 ED---GSRDSPLFDFIESCL-RNKHEMVVYEAASAIVNLPGCSA---KEL-APAVSVLQLFCSSP-KAALRYAAVRTLNK  313 (355)
T ss_dssp             -----------------CCC-CCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSS-SSSSHHHHHHCC--
T ss_pred             cc---hhhHHHHHHHHHHHH-cCCChHHHHHHHHHHHhccCCCH---HHH-HHHHHHHHHHHcCC-CchHHHHHHHHHHH
Confidence            21   012234566677777 56678888899999888855322   122 23466677788876 88999999999999


Q ss_pred             HhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHH
Q 039015          616 LCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKAS  654 (685)
Q Consensus       616 L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~  654 (685)
                      +....+.. .+..      -.-+.+++.+++..+...|-
T Consensus       314 l~~~~P~~-v~~~------n~~ie~li~d~n~sI~t~Ai  345 (355)
T 3tjz_B          314 VAMKHPSA-VTAC------NLDLENLVTDANRSIATLAI  345 (355)
T ss_dssp             ---------------------------------------
T ss_pred             HHHHCcHH-HHHH------HHHHHHHccCCcHhHHHHHH
Confidence            88876433 2222      22577788888776665443

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.07  E-value=0.016  Score=62.64  Aligned_cols=232  Identities=14%  Similarity=0.081  Sum_probs=151.4

Q ss_pred             HHHHHhcC-CCHHHHHHHHHHHHHHhhcCCchhhHHHhhC--CHHHHHHhhcC---------------C--CHHHHHHHH
Q 039015          383 FISDRLLE-GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVG--CIPSLLKLLSS---------------K--DSSTQENAI  442 (685)
Q Consensus       383 ~Lv~~L~s-~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G--~ip~Lv~lL~s---------------~--~~~~~~~A~  442 (685)
                      .+...|.+ ++.+.+--++.+|..|.. .+++|..+.+.+  .+|.++.++..               +  ...++-+++
T Consensus       171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l  249 (480)
T 1ho8_A          171 NLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL  249 (480)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred             HHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence            45556654 345556678999999987 678999888653  47777654431               1  245678889


Q ss_pred             HHhhccccCcchhHHHHhcCcH--HHHHHHhcCCCCHHHHHHHHHHHHHhcCch-----hH-HHHhhcCCCcHHHHHHHh
Q 039015          443 AALLNLSKHCKSKSMVVESGGL--DFIVDMVKKGLKVEARQHAAATLFYIASIE-----EY-RKLIGENPEAIPALVDMV  514 (685)
Q Consensus       443 ~aL~nLs~~~~~k~~i~~~g~i--~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-----~~-~~~i~~~~g~i~~Lv~lL  514 (685)
                      -++.-||.+++....+...+..  ..|+.+++......+...+.++|.||....     .. ...+.. .++ +.++..|
T Consensus       250 l~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~-~~~-l~~l~~L  327 (480)
T 1ho8_A          250 LLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLL-GNA-LPTVQSL  327 (480)
T ss_dssp             HHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHH-HCH-HHHHHHH
T ss_pred             HHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHH-ccc-hHHHHHH
Confidence            9999999998877777766644  677888887656788889999999998754     11 222322 233 5566666


Q ss_pred             cc---CCHHHHHHHHH-------HHHHhcCC---------------CC---------cHHHHHhc--CChHHHHHHhcc-
Q 039015          515 RD---GTDRSKKNALV-------AIFGLLMH---------------SG---------NHWRFLAA--GAVPLLLNLLTS-  557 (685)
Q Consensus       515 ~~---~~~~~~~~A~~-------aL~nLs~~---------------~~---------n~~~iv~~--G~v~~Lv~lL~~-  557 (685)
                      ..   ++++...+--.       .+..|++.               +-         |..++-+.  .++..|+++|.+ 
T Consensus       328 ~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~  407 (480)
T 1ho8_A          328 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK  407 (480)
T ss_dssp             HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred             hhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence            54   34444332211       11222211               11         22223221  257789999953 


Q ss_pred             --------CCChhHHHHHHHHHHHHhc-ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 039015          558 --------SDSEELITDSLAVLATLAE-KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCI  618 (685)
Q Consensus       558 --------~~~~~~~~~al~~L~~La~-~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~  618 (685)
                              +.++.+..-|+-=+..++. .|.|+..+-+.|+=..++++|.+. ++.++.+|+.++..+-.
T Consensus       408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~-d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIG  476 (480)
T ss_dssp             HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence                    1245555555656666666 699999888888888889999987 99999999998876654

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.06  E-value=0.032  Score=60.31  Aligned_cols=235  Identities=12%  Similarity=0.121  Sum_probs=154.2

Q ss_pred             HHHHhhcC-CCHHHHHHHHHHhhccccCcchhHHHHhcC--cHHHHHHHhcC----------------CCCHHHHHHHHH
Q 039015          425 SLLKLLSS-KDSSTQENAIAALLNLSKHCKSKSMVVESG--GLDFIVDMVKK----------------GLKVEARQHAAA  485 (685)
Q Consensus       425 ~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g--~i~~Lv~lL~~----------------~~~~e~~~~Aa~  485 (685)
                      .++..|.. .+...+.-++.+|..|...++.|..+.+.+  .++.++.+++.                +.....+-+++-
T Consensus       171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll  250 (480)
T 1ho8_A          171 NLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL  250 (480)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred             HHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence            34455554 345667788999999999899999998543  36777655441                112456788999


Q ss_pred             HHHHhcCchhHHHHhhcCCCcH--HHHHHHhccC-CHHHHHHHHHHHHHhcCCCC-cH----HHHHhcCChHHHHHHhcc
Q 039015          486 TLFYIASIEEYRKLIGENPEAI--PALVDMVRDG-TDRSKKNALVAIFGLLMHSG-NH----WRFLAAGAVPLLLNLLTS  557 (685)
Q Consensus       486 ~L~~Ls~~~~~~~~i~~~~g~i--~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~~-n~----~~iv~~G~v~~Lv~lL~~  557 (685)
                      +++-|++.++....+.. .+.+  +.|+++++.. ...+..-++.+|.||..... +.    ..++-.|.++.+++.|..
T Consensus       251 ~iWlLSF~~~~~~~l~~-~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  329 (480)
T 1ho8_A          251 LIWLLTFNPVFANELVQ-KYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSE  329 (480)
T ss_dssp             HHHHHTTSHHHHHHHHT-TSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHS
T ss_pred             HHHHHHcCHHHHHHHHh-cchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhh
Confidence            99999999998888876 5543  6778888764 47888899999999987542 22    223322333566777643


Q ss_pred             C--CChhHHHHHHHHHHHHhc----------------------ChhcHH---------HHHhcCC--hHHHHHHhhc---
Q 039015          558 S--DSEELITDSLAVLATLAE----------------------KLDGTI---------AILHHGA--LDMIMKILDS---  599 (685)
Q Consensus       558 ~--~~~~~~~~al~~L~~La~----------------------~~~~~~---------~i~~~g~--v~~Lv~lL~~---  599 (685)
                      .  .++++.+..-.+...|..                      +|..+.         .+-+.+.  +..|+++|.+   
T Consensus       330 rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~  409 (480)
T 1ho8_A          330 RKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVR  409 (480)
T ss_dssp             SCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcc
Confidence            3  356666554444444432                      122221         2322222  5788888873   


Q ss_pred             ------CCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 039015          600 ------CTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHE  662 (685)
Q Consensus       600 ------~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~  662 (685)
                            .+++.+..-|+-=+..++.+-| ..+..+.+ -|+-..+..|+.+.++.++..|-..++-+=.
T Consensus       410 ~~~~~~s~d~~~laVAc~Digefvr~~P-~gr~i~~~-lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          410 NGDVNAKQEKIIIQVALNDITHVVELLP-ESIDVLDK-TGGKADIMELLNHSDSRVKYEALKATQAIIG  476 (480)
T ss_dssp             TTCCCSHHHHHHHHHHHHHHHHHHHHCT-THHHHHHH-HSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCcceEEeecccHHHHHHHCc-chhHHHHH-cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence                  1145566667777788887764 44555555 7889999999999999999888777665533

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.04  E-value=0.14  Score=47.93  Aligned_cols=212  Identities=20%  Similarity=0.182  Sum_probs=142.6

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHhhccccCc-chhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHH
Q 039015          421 GCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-KSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKL  499 (685)
Q Consensus       421 G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~  499 (685)
                      ..+..++.+|+++--.+|.+|+.++.+++..- +-.+.     .+..|+.+++.......-...+.++.-++...   ..
T Consensus        32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~---Pe  103 (253)
T 2db0_A           32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK---PE  103 (253)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC---HH
T ss_pred             HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhC---HH
Confidence            45778889998877789999999999988543 22322     34556666666557777666677777776432   22


Q ss_pred             hhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCh
Q 039015          500 IGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH-SGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKL  578 (685)
Q Consensus       500 i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~  578 (685)
                      +.  .+.+|.|..=.+-|++..+.+-..+|-.+... ++.-     .+++.-+..+| ++++..-+-.|+..+..+..+ 
T Consensus       104 ~v--~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~-----~~v~rdi~sml-tskd~~Dkl~aLnFi~alGen-  174 (253)
T 2db0_A          104 LV--KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM-----ASIVRDFMSML-SSKNREDKLTALNFIEAMGEN-  174 (253)
T ss_dssp             HH--HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHT-SCSSHHHHHHHHHHHHTCCTT-
T ss_pred             HH--HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH-----HHHHHHHHHHh-cCCChHHHHHHHHHHHHHhcc-
Confidence            22  24678888878889999999999999888643 3222     23455578888 566655555566665555442 


Q ss_pred             hcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHH
Q 039015          579 DGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIR  658 (685)
Q Consensus       579 ~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~  658 (685)
                       +-.-  -...+|.|..+|.++ +.-++..|+.+|.+++..++ ..+.++..       -++=+.+.++-.+.+...-|.
T Consensus       175 -~~~y--v~PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~np-klRkii~~-------kl~e~~D~S~lv~~~V~egL~  242 (253)
T 2db0_A          175 -SFKY--VNPFLPRIINLLHDG-DEIVRASAVEALVHLATLND-KLRKVVIK-------RLEELNDTSSLVNKTVKEGIS  242 (253)
T ss_dssp             -THHH--HGGGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCH-HHHHHHHH-------HHHHCCCSCHHHHHHHHHHHH
T ss_pred             -Cccc--cCcchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCH-HHHHHHHH-------HHHHhcCcHHHHHHHHHHHHH
Confidence             1111  134689999999998 99999999999999998874 45555432       334455666666666555554


Q ss_pred             HHH
Q 039015          659 ILH  661 (685)
Q Consensus       659 ~l~  661 (685)
                      .+.
T Consensus       243 rl~  245 (253)
T 2db0_A          243 RLL  245 (253)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=96.85  E-value=0.00022  Score=73.00  Aligned_cols=50  Identities=18%  Similarity=0.445  Sum_probs=39.7

Q ss_pred             CCCccCcCccccCCC----cee----ccCcccccHHHHHHHHHcC----------CCCCCCCCccccC
Q 039015          278 PDDFTCPISLEIMKD----PVT----LSTGHTYDRASILKWFRAG----------NSTCPKTGERLQS  327 (685)
Q Consensus       278 ~~~~~CpIc~~~m~d----Pv~----~~cghtfcr~ci~~~~~~~----------~~~CP~c~~~l~~  327 (685)
                      .....|+||...+.+    |-.    ..|||.|...|+.+||...          ..+||.|+++++.
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            345789999999887    432    2699999999999999851          1479999998763

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=96.64  E-value=0.0047  Score=65.04  Aligned_cols=210  Identities=15%  Similarity=0.100  Sum_probs=108.1

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV  458 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i  458 (685)
                      ...+.+.+.|.+.++-++..|+-+...|...+++    +++ ++++.+-+++.+.++.++-+|+.+|..+..++.     
T Consensus       139 ~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe----~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~-----  208 (355)
T 3tjz_B          139 AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD----VVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR-----  208 (355)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH----HHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH-----
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH----HHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch-----
Confidence            4567778888999999999999998888865544    333 789999999999999999999999999986542     


Q ss_pred             HhcCcHHHHHHHhcCC-C-CHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 039015          459 VESGGLDFIVDMVKKG-L-KVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS  536 (685)
Q Consensus       459 ~~~g~i~~Lv~lL~~~-~-~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~  536 (685)
                         .++..++..+..+ . ++-.+..-...+..+...++..    .....++.|..+|++.++.+.-.|+.+|..+...+
T Consensus       209 ---~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~  281 (355)
T 3tjz_B          209 ---LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS----RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCS  281 (355)
T ss_dssp             ---HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CCCCCSSHHHHHHHHHHHTC-----
T ss_pred             ---HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh----hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC
Confidence               1455566666554 1 2333443333333333322111    11456778888889989999999999999885532


Q ss_pred             CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHH
Q 039015          537 GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLA  615 (685)
Q Consensus       537 ~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~  615 (685)
                      ..    .-..++..|..+| ++++..++-.|+..|..++....+.-+..    -..+..++.++ +......|+..|..
T Consensus       282 ~~----~~~~a~~~L~~fL-ss~d~niryvaLr~L~~l~~~~P~~v~~~----n~~ie~li~d~-n~sI~t~Aittllk  350 (355)
T 3tjz_B          282 AK----ELAPAVSVLQLFC-SSPKAALRYAAVRTLNKVAMKHPSAVTAC----NLDLENLVTDA-NRSIATLAITTLLK  350 (355)
T ss_dssp             ----------CCCTHHHHH-HSSSSSSHHHHHHCC--------------------------------------------
T ss_pred             HH----HHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHCcHHHHHH----HHHHHHHccCC-cHhHHHHHHHHhhh
Confidence            21    2244577777778 56677888889988888877433222211    13355567666 76676677766654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.52  E-value=0.031  Score=66.20  Aligned_cols=259  Identities=15%  Similarity=0.164  Sum_probs=172.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcch---hHH
Q 039015          381 ANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS---KSM  457 (685)
Q Consensus       381 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~---k~~  457 (685)
                      +..+++.++..+.+.+..|+..|..+...+...  .....|.+..|.+.+......  +.|+.++..|+.....   -+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~   91 (986)
T 2iw3_A           16 LEELFQKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEP   91 (986)
T ss_dssp             HHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHH
T ss_pred             HHHHHhhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCccc
Confidence            444677777655666778888888877533222  122246788888888764333  8888888888754422   222


Q ss_pred             HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccC-CHHHHHHHHHHHHHhcCC
Q 039015          458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDG-TDRSKKNALVAIFGLLMH  535 (685)
Q Consensus       458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~  535 (685)
                      .. -+.++.++..+... ...+|..|..++..+...- .+..     ..++|.|+..|.++ ..+.|..|+.+|-.|+..
T Consensus        92 ~~-~~~~~~~~~~~~dk-~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~  164 (986)
T 2iw3_A           92 YI-VQLVPAICTNAGNK-DKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDA  164 (986)
T ss_dssp             HH-HTTHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred             ch-HHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence            22 25688888887766 6788887777776664321 1111     23689999988765 589999999999999864


Q ss_pred             CCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHH
Q 039015          536 SGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLA  615 (685)
Q Consensus       536 ~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~  615 (685)
                      ........=-.+||.+.+.+ -+..+++...|..++..+|..-.+++.   ...+|.|++.+..+   .....++-.|..
T Consensus       165 ~~~~~~~~~~~~~p~~~~~~-~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p---~~~~~~~~~l~~  237 (986)
T 2iw3_A          165 AKDQVALRMPELIPVLSETM-WDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADP---TEVPETVHLLGA  237 (986)
T ss_dssp             SHHHHHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCT---THHHHHHHHHTT
T ss_pred             hHHHHHHhccchhcchHhhc-ccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcCh---hhhHHHHHHhhc
Confidence            42221112235788888888 678899999999999999885444432   13489999988743   445566666654


Q ss_pred             HhccC--cHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015          616 LCING--GANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF  663 (685)
Q Consensus       616 L~~~~--~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~  663 (685)
                      .+.=.  ..-....      ++|+|..=+...+...+|+++-+..+|.+.
T Consensus       238 ~tfv~~v~~~~l~~------~~p~l~r~l~~~~~~~~r~~~~~~~n~~~l  281 (986)
T 2iw3_A          238 TTFVAEVTPATLSI------MVPLLSRGLNERETGIKRKSAVIIDNMCKL  281 (986)
T ss_dssp             CCCCSCCCHHHHHH------HHHHHHHHHTSSSHHHHHHHHHHHHHHHTT
T ss_pred             CeeEeeecchhHHH------HHHHHHhhhccCcchhheeeEEEEcchhhh
Confidence            43321  1111122      267888888888888999999999998875

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.39  E-value=0.96  Score=53.15  Aligned_cols=206  Identities=13%  Similarity=0.106  Sum_probs=128.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhh-cCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLL-SSKDSSTQENAIAALLNLSKHCKSKSMV  458 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL-~s~~~~~~~~A~~aL~nLs~~~~~k~~i  458 (685)
                      .++.|...|...+...+..|+..|..+--+. .|..      ++..|+..+ .+.+..++..++.+|..+...       
T Consensus       473 v~e~L~~~L~dd~~~~~~~AalALGli~vGT-gn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g-------  538 (963)
T 4ady_A          473 VYEALKEVLYNDSATSGEAAALGMGLCMLGT-GKPE------AIHDMFTYSQETQHGNITRGLAVGLALINYG-------  538 (963)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-CCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT-------
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhhccc-CCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCC-------
Confidence            3455555555454444444555555443211 1211      234455433 345566777777776654432       


Q ss_pred             HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhc-cCCHHHHHHHHHHHHHhcCCCC
Q 039015          459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR-DGTDRSKKNALVAIFGLLMHSG  537 (685)
Q Consensus       459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~  537 (685)
                       +...++.+++.|....++-+|..++.++.--.....+       ..+|+.|++.+. +.+..++..|+.+|..+....+
T Consensus       539 -~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn-------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~  610 (963)
T 4ady_A          539 -RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGN-------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY  610 (963)
T ss_dssp             -CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC-------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC
T ss_pred             -ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH
Confidence             3456778888887654667766665555422221121       235676777665 4457888899999998776553


Q ss_pred             cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 039015          538 NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALC  617 (685)
Q Consensus       538 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~  617 (685)
                              ..++.++.+|..+.++.++..|..+|..++.......      ++..|..++++. ...++..|+-+|..+.
T Consensus       611 --------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~------aid~L~~L~~D~-d~~Vrq~Ai~ALG~Ig  675 (963)
T 4ady_A          611 --------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS------AIDVLDPLTKDP-VDFVRQAAMIALSMIL  675 (963)
T ss_dssp             --------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH------HHHHHHHHHTCS-SHHHHHHHHHHHHHHS
T ss_pred             --------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH------HHHHHHHHccCC-CHHHHHHHHHHHHHHh
Confidence                    3577788877677789999999999999865433222      235566677776 9999999999999988


Q ss_pred             ccCcH
Q 039015          618 INGGA  622 (685)
Q Consensus       618 ~~~~~  622 (685)
                      ...++
T Consensus       676 ~gtnn  680 (963)
T 4ady_A          676 IQQTE  680 (963)
T ss_dssp             TTCCT
T ss_pred             cCCcc
Confidence            76543

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.13  E-value=0.11  Score=52.36  Aligned_cols=185  Identities=11%  Similarity=0.164  Sum_probs=122.7

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhcCCchh--h-HHHhh-CCHHHHHHhhcCCCHHHHHHHHHHhhccccCc---c-hh
Q 039015          384 ISDRLLEGTSEEKNKVAYEVRLLTKSSIFNR--S-CLVEV-GCIPSLLKLLSSKDSSTQENAIAALLNLSKHC---K-SK  455 (685)
Q Consensus       384 Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r--~-~i~~~-G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~---~-~k  455 (685)
                      |-+.|.|.+...|..|+..|..+........  . .+... ..++.+-..+.+.|..++..++.+|..+...-   . .+
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            4578999999999999999988765332111  1 11112 34556667888899999999999988776432   1 12


Q ss_pred             H--HHHhcCcHHHHHHH-hcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 039015          456 S--MVVESGGLDFIVDM-VKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGL  532 (685)
Q Consensus       456 ~--~i~~~g~i~~Lv~l-L~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL  532 (685)
                      .  ...-..+++.|+.- |.++ ...++..|..++..+.......      ..+++.++..+.+.++.++..++..|..+
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~-k~~~~~~a~~~l~~~~~~~~~~------~~~~e~l~~~l~~Knpkv~~~~l~~l~~~  166 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSS-RATTKTQSMSCILSLCGLDTSI------TQSVELVIPFFEKKLPKLIAAAANCVYEL  166 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCC-CHHHHHHHHHHHHHHHHTSSSS------HHHHHHHGGGGGCSCHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            2  22235567777764 6666 7888888888887765322111      11355666777888999999999888887


Q ss_pred             cCCC--C--cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC
Q 039015          533 LMHS--G--NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK  577 (685)
Q Consensus       533 s~~~--~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~  577 (685)
                      ...-  .  +....+ ..+++.+..+| .+.+..+++.|..++..+-..
T Consensus       167 l~~fg~~~~~~k~~l-~~i~~~l~k~l-~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          167 MAAFGLTNVNVQTFL-PELLKHVPQLA-GHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHTTTTCCHHHHH-HHHGGGHHHHH-TCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHhCCCcCCchhHH-HHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHH
Confidence            5321  1  112122 23566678888 788999999999999888653

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.11  E-value=0.16  Score=50.09  Aligned_cols=231  Identities=16%  Similarity=0.157  Sum_probs=150.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHh-hCCHHHHHH-------hhcCCC-----HHHHHHHHHHhhc
Q 039015          381 ANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVE-VGCIPSLLK-------LLSSKD-----SSTQENAIAALLN  447 (685)
Q Consensus       381 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~-~G~ip~Lv~-------lL~s~~-----~~~~~~A~~aL~n  447 (685)
                      +..++..|.  +++.|..|+.+|..--...++--..+-. .|.+..|++       .|+.+.     ..-..+|+..|.-
T Consensus         5 i~qli~~L~--~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQc   82 (268)
T 2fv2_A            5 IYQWINELS--SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQC   82 (268)
T ss_dssp             HHHHHHHTS--STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhc--CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHH
Confidence            445555554  4455777765554422211222222223 377777754       232211     2344678888888


Q ss_pred             cccCcchhHHHHhcCcHHHHHHHhcCCC----CHHHHHHHHHHHHHhcCch--hHHHHhhcCCCcHHHHHHHhccCCHHH
Q 039015          448 LSKHCKSKSMVVESGGLDFIVDMVKKGL----KVEARQHAAATLFYIASIE--EYRKLIGENPEAIPALVDMVRDGTDRS  521 (685)
Q Consensus       448 Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~----~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~  521 (685)
                      ++.|++.|..+.++...--|-.+|+...    -.-.|..+.+++..|...+  +.-..+.. .+.||..++.++.|+.-.
T Consensus        83 vAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~-tEiiplCLrime~GselS  161 (268)
T 2fv2_A           83 VASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLT-TEIIPLCLRIMESGSELS  161 (268)
T ss_dssp             HHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHH-TTHHHHHHHHHHHSCHHH
T ss_pred             HHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHh-hhHHHHHHHHHhhccHHH
Confidence            9999999999999988888888887551    1355888999999998655  44444455 789999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCcHHHHHh--------cCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCC--h-
Q 039015          522 KKNALVAIFGLLMHSGNHWRFLA--------AGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGA--L-  590 (685)
Q Consensus       522 ~~~A~~aL~nLs~~~~n~~~iv~--------~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~--v-  590 (685)
                      |..|.-.+..+-.++..-..+..        ..+...++.-+..+++..+....+.+-..|+.++.++.++.+.=-  + 
T Consensus       162 KtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lr  241 (268)
T 2fv2_A          162 KTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLK  241 (268)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGT
T ss_pred             HHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhh
Confidence            99999999888766654333322        113333444444567889999999999999999999999854211  1 


Q ss_pred             -HHHHHHhhcCCChhHHHHHHHHHHHH
Q 039015          591 -DMIMKILDSCTSRAGKEYCVSLLLAL  616 (685)
Q Consensus       591 -~~Lv~lL~~~~s~~~~e~a~~~L~~L  616 (685)
                       .....+++.  ++..+..-...+.++
T Consensus       242 d~tf~~~l~~--D~~~k~~l~qLl~n~  266 (268)
T 2fv2_A          242 DTTFAQVLKD--DTTTKRWLAQLVKNL  266 (268)
T ss_dssp             SSTTHHHHTS--CHHHHHHHHHHHHHS
T ss_pred             ChHHHHHHhc--CHHHHHHHHHHHHhc
Confidence             111123332  566666666655554

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=95.77  E-value=0.049  Score=59.41  Aligned_cols=245  Identities=12%  Similarity=0.084  Sum_probs=153.8

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCc--hhhHHHhhCCHHHHHHhh--cC-----CC---HHHHHHHHHHhhc
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIF--NRSCLVEVGCIPSLLKLL--SS-----KD---SSTQENAIAALLN  447 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~--~r~~i~~~G~ip~Lv~lL--~s-----~~---~~~~~~A~~aL~n  447 (685)
                      ..+.|+..|-+...+.|-.|+-.||.+.+....  .|..-......-.|+.+|  +.     +|   ..++|.|+.+|..
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            467788888889999999999999998875431  111000112222233222  21     22   4789999888888


Q ss_pred             cccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHH
Q 039015          448 LSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALV  527 (685)
Q Consensus       448 Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~  527 (685)
                      + .+-+..     ..++..++..+..+ .++++.-+.-.|.++   .+   .+..-.++++.++..|.+.+++++..|+.
T Consensus       255 L-~hLp~e-----~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL---~D---LL~~Ld~Vv~aVL~GL~D~DDDVRAVAAe  321 (800)
T 3oc3_A          255 I-YPLIGP-----NDIIEQLVGFLDSG-DWQVQFSGLIALGYL---KE---FVEDKDGLCRKLVSLLSSPDEDIKLLSAE  321 (800)
T ss_dssp             H-TTTSCS-----CCHHHHHTTGGGCS-CHHHHHHHHHHHHHT---GG---GCCCHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             H-HhCChh-----HHHHHHHHhhcCCC-CeeehhhhHHHHHHH---HH---HHHHHHHHHHHHHhhcCCcccHHHHHHHH
Confidence            7 554333     44556666555666 899999999999999   22   21112568889999999999999999999


Q ss_pred             HHHHhcCCCCcHHHHHhcCChHHHHHHhcc-CCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHH
Q 039015          528 AIFGLLMHSGNHWRFLAAGAVPLLLNLLTS-SDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGK  606 (685)
Q Consensus       528 aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~-~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~  606 (685)
                      +|..++ .++....+     +..+-+.|.+ ++-.......+.+|+.|+..+..  +-....-||.|..++++. -..++
T Consensus       322 tLiPIA-~p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHt-ITSVR  392 (800)
T 3oc3_A          322 LLCHFP-ITDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSP-VPEVR  392 (800)
T ss_dssp             HHTTSC-CSSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCS-SHHHH
T ss_pred             Hhhhhc-chhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCC-cHHHH
Confidence            999998 22222222     2334444432 11123345566777777766531  111122388888899987 89999


Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHH
Q 039015          607 EYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIR  658 (685)
Q Consensus       607 e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~  658 (685)
                      ...+.+|..+.  . ..   .+.-      ....++-+.++.+.+.+..+-+
T Consensus       393 ~AVL~TL~tfL--~-~~---~LRL------IFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          393 TSILNMVKNLS--E-ES---IDFL------VAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHHTTTCC--C-HH---HHHH------HHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--h-hh---HHHH------HHHHHHhCCcHHHHHHHHHHHH
Confidence            99999987776  1 22   2211      3455666777777666555553

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=94.78  E-value=1  Score=53.82  Aligned_cols=259  Identities=13%  Similarity=0.095  Sum_probs=138.9

Q ss_pred             HHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhc------CCCHHHHHHHHHHhhccccCcchhHHHHhc-----C
Q 039015          394 EEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLS------SKDSSTQENAIAALLNLSKHCKSKSMVVES-----G  462 (685)
Q Consensus       394 ~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~------s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~-----g  462 (685)
                      ..|..|...|..++....   ..+.. -.++.+...|.      +.+...++.|+.++..++.....+..-+..     .
T Consensus       376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~  451 (960)
T 1wa5_C          376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN  451 (960)
T ss_dssp             CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred             CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence            456778888888886431   22211 12334444454      456678899999998887542211100000     1


Q ss_pred             cHHH----HHHHhcCC--CCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 039015          463 GLDF----IVDMVKKG--LKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS  536 (685)
Q Consensus       463 ~i~~----Lv~lL~~~--~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~  536 (685)
                      ..+.    ++..|...  ..+-+|..|+++|..++..- ....+   ..+++.++..|.+.+..++..|+.||.+++...
T Consensus       452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~l---~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~  527 (960)
T 1wa5_C          452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQL---IELMPILATFLQTDEYVVYTYAAITIEKILTIR  527 (960)
T ss_dssp             HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHHH---HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred             HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHHH---HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcc
Confidence            2222    23334433  26888999999999987642 12223   237888999888888999999999999998742


Q ss_pred             C---------cHHHHHh--cCChHHHHHHhccCC----ChhHHHHHHHHHHHHhcCh-hcHHHHHhcCChHHHHHHhh--
Q 039015          537 G---------NHWRFLA--AGAVPLLLNLLTSSD----SEELITDSLAVLATLAEKL-DGTIAILHHGALDMIMKILD--  598 (685)
Q Consensus       537 ~---------n~~~iv~--~G~v~~Lv~lL~~~~----~~~~~~~al~~L~~La~~~-~~~~~i~~~g~v~~Lv~lL~--  598 (685)
                      +         .+..+..  ...++.|+.++....    .....+.++.+|..++..- +.-.-... ..++.|+.++.  
T Consensus       528 ~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~  606 (960)
T 1wa5_C          528 ESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIM  606 (960)
T ss_dssp             SCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHH
T ss_pred             cccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHH
Confidence            2         2222221  224455556664321    0001234445554443310 00000000 01244444332  


Q ss_pred             --cCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015          599 --SCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF  663 (685)
Q Consensus       599 --~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~  663 (685)
                        +..++.....++.+|..++...++.....+.  ..++|.+..++..........+-.++..+-+.
T Consensus       607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~--~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~  671 (960)
T 1wa5_C          607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV--DSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ  671 (960)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH--HHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred             HhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH--HHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence              2335566667888888887764333333333  24578888888776555555555555555443

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=94.74  E-value=0.2  Score=49.47  Aligned_cols=148  Identities=11%  Similarity=0.055  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCC-----HHHHHHHHHHhhccccCcch--hHHHHhcCcHHHH
Q 039015          395 EKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKD-----SSTQENAIAALLNLSKHCKS--KSMVVESGGLDFI  467 (685)
Q Consensus       395 ~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~-----~~~~~~A~~aL~nLs~~~~~--k~~i~~~g~i~~L  467 (685)
                      ....|+..++-+|. +++.|..+.++...-.|-.+|...+     .-++..++.+++.|.+.++.  -..+.+.+.+|..
T Consensus        72 RVcnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplC  150 (268)
T 2fv2_A           72 RVCNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLC  150 (268)
T ss_dssp             HHHHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHH
Confidence            44678888888996 8899999999998777888887643     35778888888998876544  3344478899999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCc-------HHHHHH-HhccCCHHHHHHHHHHHHHhcCCCCcH
Q 039015          468 VDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEA-------IPALVD-MVRDGTDRSKKNALVAIFGLLMHSGNH  539 (685)
Q Consensus       468 v~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~-------i~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~~~n~  539 (685)
                      ++.+..| +.-.+..|+-++..+-.++..-.-+.....=       +..+|. +.++++++..+..+.+-..|+.++..+
T Consensus       151 Lrime~G-selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar  229 (268)
T 2fv2_A          151 LRIMESG-SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAR  229 (268)
T ss_dssp             HHHHHHS-CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred             HHHHhhc-cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHH
Confidence            9999999 9999999999999988877766655543332       222333 235678899999999999999888877


Q ss_pred             HHHHh
Q 039015          540 WRFLA  544 (685)
Q Consensus       540 ~~iv~  544 (685)
                      ..+..
T Consensus       230 ~aL~~  234 (268)
T 2fv2_A          230 EALRQ  234 (268)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76654

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.70  E-value=0.24  Score=50.77  Aligned_cols=170  Identities=9%  Similarity=0.024  Sum_probs=105.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHH----HhhcC-CCHHHHHHHHHHhhccccCcchh
Q 039015          381 ANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLL----KLLSS-KDSSTQENAIAALLNLSKHCKSK  455 (685)
Q Consensus       381 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv----~lL~s-~~~~~~~~A~~aL~nLs~~~~~k  455 (685)
                      +..+.+.+ +=..+.+.-++..+|.++. ++.....+.+.+.-..++    ..+.+ ..+..+-.++++++|+..++.++
T Consensus       105 l~~l~kil-~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~  182 (304)
T 3ebb_A          105 LQILWKAI-NCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ  182 (304)
T ss_dssp             HHHHHHHH-TSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH
T ss_pred             HHHHHHHH-cCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH
Confidence            45555554 3344567778888888775 555555555443333333    33332 35667899999999999999998


Q ss_pred             HHHHh--cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhcc-CCHHHHHHHHHHHHHh
Q 039015          456 SMVVE--SGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRD-GTDRSKKNALVAIFGL  532 (685)
Q Consensus       456 ~~i~~--~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~nL  532 (685)
                      ..+..  ..+++.+...+... +..++..++.+++|++..............++..+..++.. .+.+....++.||.+|
T Consensus       183 ~~l~~~~~~il~~~~~~~~~~-nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL  261 (304)
T 3ebb_A          183 KLMMSQRESLMSHAIELKSGS-NKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTL  261 (304)
T ss_dssp             HHHHHTHHHHHHHHHGGGSSC-CHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence            88874  23455555555555 88999999999999986431100010101134444445543 4678888999999999


Q ss_pred             cCCCCcHHHHHhcCChHHHHH
Q 039015          533 LMHSGNHWRFLAAGAVPLLLN  553 (685)
Q Consensus       533 s~~~~n~~~iv~~G~v~~Lv~  553 (685)
                      ...++....+.+.=.+...++
T Consensus       262 ~~~~~~~~~lak~l~~~~~v~  282 (304)
T 3ebb_A          262 ISDDSNAVQLAKSLGVDSQIK  282 (304)
T ss_dssp             HTTCHHHHHHHHHTTHHHHGG
T ss_pred             HhCChhHHHHHHHcCHHHHHH
Confidence            976555555554433333333

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=94.57  E-value=0.014  Score=49.59  Aligned_cols=34  Identities=12%  Similarity=0.203  Sum_probs=28.9

Q ss_pred             CCccCcCccc-cCCCcee--ccCcccccHHHHHHHHH
Q 039015          279 DDFTCPISLE-IMKDPVT--LSTGHTYDRASILKWFR  312 (685)
Q Consensus       279 ~~~~CpIc~~-~m~dPv~--~~cghtfcr~ci~~~~~  312 (685)
                      ++..|+||.+ +..+||.  +.|||+||+.|+..+..
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~   38 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP   38 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence            4688999996 4789998  89999999999998543

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.53  E-value=0.94  Score=46.37  Aligned_cols=185  Identities=13%  Similarity=0.051  Sum_probs=107.4

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHH----HHhcCCCCHHHHHHHHHHHHHhcCchhHHH
Q 039015          423 IPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIV----DMVKKGLKVEARQHAAATLFYIASIEEYRK  498 (685)
Q Consensus       423 ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv----~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~  498 (685)
                      +..+.+++ +...+.+--++.+|.-+..++.....+.+.+.-..++    ..+.....+..+..++.++.||-.++..+.
T Consensus       105 l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~  183 (304)
T 3ebb_A          105 LQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQK  183 (304)
T ss_dssp             HHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHH
T ss_pred             HHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHH
Confidence            44555554 3334444455555555555554444444322222222    333322256779999999999999998888


Q ss_pred             HhhcCC-CcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC--C-cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHH
Q 039015          499 LIGENP-EAIPALVDMVRDGTDRSKKNALVAIFGLLMHS--G-NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATL  574 (685)
Q Consensus       499 ~i~~~~-g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~--~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L  574 (685)
                      .+.... .+++.+...+...+...+..++++++|++...  . ....  ...+...+..++....+.+..-.++.+|.+|
T Consensus       184 ~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~--~~~ll~~l~~il~~~~d~EalyR~LvALGtL  261 (304)
T 3ebb_A          184 LMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG--KAQCLSLISTILEVVQDLEATFRLLVALGTL  261 (304)
T ss_dssp             HHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH--HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence            776521 24445555555567788889999999998532  1 1111  1113444556664456788889999999999


Q ss_pred             hcChhcHHHHHhcCChHHHHH-HhhcCCChhHHHHHH
Q 039015          575 AEKLDGTIAILHHGALDMIMK-ILDSCTSRAGKEYCV  610 (685)
Q Consensus       575 a~~~~~~~~i~~~g~v~~Lv~-lL~~~~s~~~~e~a~  610 (685)
                      ...+.....+.+.=++...+. +...+..+++.+.|-
T Consensus       262 ~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~  298 (304)
T 3ebb_A          262 ISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCR  298 (304)
T ss_dssp             HTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHH
T ss_pred             HhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHH
Confidence            876554555555445555555 444422444444443

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=94.52  E-value=0.48  Score=47.47  Aligned_cols=179  Identities=11%  Similarity=0.131  Sum_probs=119.0

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhC-CHHHHHHhhcCCCHHHHHHHHHHhhccccC---cchhHHH
Q 039015          383 FISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVG-CIPSLLKLLSSKDSSTQENAIAALLNLSKH---CKSKSMV  458 (685)
Q Consensus       383 ~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G-~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~---~~~k~~i  458 (685)
                      .+...|-+.+...+.+|+..|......++  ...+...+ .++.+.--+.+++..+...++.+|..+...   ...+..-
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~--~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~  127 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLADTSP--RSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ  127 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHHCH--HHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhhCh--HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence            33455556788889999999888765332  23332222 233333233467888999998888776321   1111111


Q ss_pred             Hh-cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 039015          459 VE-SGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG  537 (685)
Q Consensus       459 ~~-~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~  537 (685)
                      .+ .-.+|.|+.-+..+ ...+|..+-.++..|...      ..- ...++.+++-+++.+.+.+..++..|..+-...+
T Consensus       128 ~ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v------~~~-~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G  199 (266)
T 2of3_A          128 EEVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDV------VGP-LKMTPMLLDALKSKNARQRSECLLVIEYYITNAG  199 (266)
T ss_dssp             HHHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHH------HCH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHH------CCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence            12 33689999988877 788888888877666432      122 3467888888899999999999888887753333


Q ss_pred             cHHHHHhcCCh---HHHHHHhccCCChhHHHHHHHHHHHHhc
Q 039015          538 NHWRFLAAGAV---PLLLNLLTSSDSEELITDSLAVLATLAE  576 (685)
Q Consensus       538 n~~~iv~~G~v---~~Lv~lL~~~~~~~~~~~al~~L~~La~  576 (685)
                      ..    ..+++   +.+..++ ++.+..+++.|+.++..+-.
T Consensus       200 ~~----~~~~l~~~~~ia~ll-~D~d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          200 IS----PLKSLSVEKTVAPFV-GDKDVNVRNAAINVLVACFK  236 (266)
T ss_dssp             SG----GGGGGCHHHHHGGGG-GCSSHHHHHHHHHHHHHHHH
T ss_pred             CC----ccccccchHHHHHHH-cCCCHHHHHHHHHHHHHHHH
Confidence            22    24478   9999999 78899999999999886644

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=94.47  E-value=0.033  Score=57.98  Aligned_cols=64  Identities=23%  Similarity=0.344  Sum_probs=53.5

Q ss_pred             CCccCcCccccCCCceec-cCccc--ccHHHHHHHHH-cCCCCCCCCCccccCCCCcccHHHHhhHHH
Q 039015          279 DDFTCPISLEIMKDPVTL-STGHT--YDRASILKWFR-AGNSTCPKTGERLQSKELLVNLVLKRIIQD  342 (685)
Q Consensus       279 ~~~~CpIc~~~m~dPv~~-~cght--fcr~ci~~~~~-~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~  342 (685)
                      -.+.||++...|..|+.- .|.|.  |+...+..+.. .+...||.|.+.+...++..+..+..++..
T Consensus       248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~  315 (371)
T 3i2d_A          248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN  315 (371)
T ss_dssp             EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred             EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence            349999999999999976 79997  88877666654 357799999999999999999988877654

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=94.33  E-value=4.6  Score=41.49  Aligned_cols=239  Identities=16%  Similarity=0.142  Sum_probs=167.8

Q ss_pred             HHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcch-hH----HHHh-cCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 039015          416 CLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS-KS----MVVE-SGGLDFIVDMVKKGLKVEARQHAAATLFY  489 (685)
Q Consensus       416 ~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~----~i~~-~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~  489 (685)
                      .+...+.+..|+..|..=+-+.+..+..+..++-....+ +-    .+.+ ...+..|+.--   .+++.-..+-..|..
T Consensus        73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY---e~~diAl~~G~mLRe  149 (341)
T 1upk_A           73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY---ESPEIALNCGIMLRE  149 (341)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG---GSTTTHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh---ccchhHhHHHHHHHH
Confidence            456678999999999998999999999999998766533 22    2222 22233333222   255777788888999


Q ss_pred             hcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCcHHHHHhcC---ChHHHHHHhccCCChhHHH
Q 039015          490 IASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH-SGNHWRFLAAG---AVPLLLNLLTSSDSEELIT  565 (685)
Q Consensus       490 Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n~~~iv~~G---~v~~Lv~lL~~~~~~~~~~  565 (685)
                      ...++.....|-. .+.+-.+.+.++.++=++-.+|..++.-|-.. .......+...   .+...-+|| .+++=-.+.
T Consensus       150 cir~e~la~~iL~-~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll-~S~NYVTkR  227 (341)
T 1upk_A          150 CIRHEPLAKIILW-SEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLL-HSENYVTKR  227 (341)
T ss_dssp             HHTSHHHHHHHHH-SGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHT-TCSSHHHHH
T ss_pred             HHHhHHHHHHHhc-cHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHh-cCCcchhHH
Confidence            9888888887777 77888999999999989999999998887643 33444444433   355566777 566667888


Q ss_pred             HHHHHHHHHhcChhcHHHH---HhcCC-hHHHHHHhhcCCChhHHHHHHHHHHHHhccC--cHHHHHHHHhcCCcHHHHH
Q 039015          566 DSLAVLATLAEKLDGTIAI---LHHGA-LDMIMKILDSCTSRAGKEYCVSLLLALCING--GANVVALLVKSPSLMGSLY  639 (685)
Q Consensus       566 ~al~~L~~La~~~~~~~~i---~~~g~-v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~--~~~~~~~l~~~~g~i~~L~  639 (685)
                      .++.+|..|-.+..+...+   +..+. +..++.+|++. +..++-.|.-+.--...+.  ++.+..++.+ .  -..|+
T Consensus       228 QSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~-N--r~kLl  303 (341)
T 1upk_A          228 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDILLK-N--QAKLI  303 (341)
T ss_dssp             HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHH-T--HHHHH
T ss_pred             HHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeCCCCChHHHHHHHH-H--HHHHH
Confidence            9999999998887776654   33333 88889999998 9999999998887766543  4667777776 3  45666


Q ss_pred             HHHhcC-C-----hHHHHHHHHHHHHHHHh
Q 039015          640 SLLSQG-S-----SRASKKASALIRILHEF  663 (685)
Q Consensus       640 ~Ll~~g-~-----~~~k~~A~~lL~~l~~~  663 (685)
                      .++.+- +     +.-...=+-+++.+...
T Consensus       304 ~fl~~f~~d~~eDeqF~dEK~~lI~~I~~L  333 (341)
T 1upk_A          304 EFLSKFQNDRTEDEQFNDEKTYLVKQIRDL  333 (341)
T ss_dssp             HHHHHTTTTC-CCSHHHHHHHHHHHHHHTC
T ss_pred             HHHHhCCCCCcchhhHHHHHHHHHHHHHhC
Confidence            666542 1     22223333466666554

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=94.25  E-value=1.1  Score=46.01  Aligned_cols=223  Identities=16%  Similarity=0.125  Sum_probs=161.2

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhh--CCHHHHHH-hhcC-CCHHHHHHHHHHhhccccCcchh
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEV--GCIPSLLK-LLSS-KDSSTQENAIAALLNLSKHCKSK  455 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~--G~ip~Lv~-lL~s-~~~~~~~~A~~aL~nLs~~~~~k  455 (685)
                      .+..|+..|..=+-+.|..++....++.+.....|...++.  .- |-++. ++.. +++++...+=.+|.....++.-.
T Consensus        79 ll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~-peil~~L~~gYe~~diAl~~G~mLRecir~e~la  157 (341)
T 1upk_A           79 LLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ-QNILFMLLKGYESPEIALNCGIMLRECIRHEPLA  157 (341)
T ss_dssp             HHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC-THHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHH
T ss_pred             HHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC-HHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHH
Confidence            46677788877888999998888888887666555443321  12 33333 3322 57788888888999999999888


Q ss_pred             HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-chhHHHHh-hcC-CCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 039015          456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIAS-IEEYRKLI-GEN-PEAIPALVDMVRDGTDRSKKNALVAIFGL  532 (685)
Q Consensus       456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~~~i-~~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL  532 (685)
                      ..|...+.+..+......+ +-++...|.+++..|-. +....... ..+ ...+...-.||.+++.-++..++..|..|
T Consensus       158 ~~iL~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgel  236 (341)
T 1upk_A          158 KIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGEL  236 (341)
T ss_dssp             HHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHH
Confidence            8888888899999999988 99999999999987743 33322222 221 13566777899999999999999999999


Q ss_pred             cCCCCcHHHHHhc----CChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHH
Q 039015          533 LMHSGNHWRFLAA----GAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEY  608 (685)
Q Consensus       533 s~~~~n~~~iv~~----G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~  608 (685)
                      -.+..|...|...    .-+..++.+| .+.+..++-+|..++-....+|.-         -+.++.+|...     ++.
T Consensus       237 Lldr~N~~vM~~Yis~~~nLkl~M~LL-~d~sk~Iq~EAFhVFKvFVANP~K---------~~~I~~IL~~N-----r~k  301 (341)
T 1upk_A          237 LLDRHNFTIMTKYISKPENLKLMMNLL-RDKSRNIQFEAFHVFKVFVANPNK---------TQPILDILLKN-----QAK  301 (341)
T ss_dssp             HHSGGGHHHHHHHTTCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHCSSC---------CHHHHHHHHHT-----HHH
T ss_pred             HhCchHHHHHHHHhCCHHHHHHHHHHh-cCchhchhhhhhhheeeeeeCCCC---------ChHHHHHHHHH-----HHH
Confidence            9999988777553    3467788888 678899999999998877655432         34445544432     566


Q ss_pred             HHHHHHHHhcc
Q 039015          609 CVSLLLALCIN  619 (685)
Q Consensus       609 a~~~L~~L~~~  619 (685)
                      -+..|..+-.+
T Consensus       302 Ll~fl~~f~~d  312 (341)
T 1upk_A          302 LIEFLSKFQND  312 (341)
T ss_dssp             HHHHHHHTTTT
T ss_pred             HHHHHHhCCCC
Confidence            66666665543

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=94.24  E-value=0.16  Score=51.17  Aligned_cols=187  Identities=16%  Similarity=0.118  Sum_probs=119.0

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhcCchh---HHHHhh-cCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC----c
Q 039015          467 IVDMVKKGLKVEARQHAAATLFYIASIEE---YRKLIG-ENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG----N  538 (685)
Q Consensus       467 Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~---~~~~i~-~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~----n  538 (685)
                      +-+-|.+. ++..|..|...|..+.....   ...... .-....+.+-..+.+.+..+...|+.+|..++..-.    .
T Consensus        14 l~e~l~sk-~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERLTYK-LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHTTCS-SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhcccC-cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            44567777 89999999988877643221   111111 112245666678888889999999999888875322    1


Q ss_pred             HH--HHHhcCChHHHHHH-hccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHH
Q 039015          539 HW--RFLAAGAVPLLLNL-LTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLA  615 (685)
Q Consensus       539 ~~--~iv~~G~v~~Lv~l-L~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~  615 (685)
                      +.  ...-..+++.|+.- | .+....++..+..++..++........+     +..++..+.+. +|.++..++..|..
T Consensus        93 ~~~~~~~~~~~l~~lveK~l-~~~k~~~~~~a~~~l~~~~~~~~~~~~~-----~e~l~~~l~~K-npkv~~~~l~~l~~  165 (278)
T 4ffb_C           93 NAHNITLISTWTPLLVEKGL-TSSRATTKTQSMSCILSLCGLDTSITQS-----VELVIPFFEKK-LPKLIAAAANCVYE  165 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHTS-SCCCHHHHHHHHHHHHHHHHTSSSSHHH-----HHHHGGGGGCS-CHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHh-cCccHHHHHHHHHHHHHHHHhcCcHHHH-----HHHHHHHHhcc-CHHHHHHHHHHHHH
Confidence            22  22334567777764 5 5677888888888887776532221111     23445566676 99999999999988


Q ss_pred             HhccCcHH---HHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 039015          616 LCINGGAN---VVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFY  664 (685)
Q Consensus       616 L~~~~~~~---~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~  664 (685)
                      +...-+..   ....+   ..+++.+..++.+.++.+|..|..++-.+.++-
T Consensus       166 ~l~~fg~~~~~~k~~l---~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~  214 (278)
T 4ffb_C          166 LMAAFGLTNVNVQTFL---PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT  214 (278)
T ss_dssp             HHHHHTTTTCCHHHHH---HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHhCCCcCCchhHH---HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            76431111   11111   123457788899999999999999998887653

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=93.85  E-value=0.042  Score=54.40  Aligned_cols=49  Identities=14%  Similarity=0.356  Sum_probs=39.9

Q ss_pred             CccCcCccccCCCceec-cCcccccHHHHHHHHHc-CCCCCCCCCccccCC
Q 039015          280 DFTCPISLEIMKDPVTL-STGHTYDRASILKWFRA-GNSTCPKTGERLQSK  328 (685)
Q Consensus       280 ~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~-~~~~CP~c~~~l~~~  328 (685)
                      -..|.||.++...-+.- .|++.|...|+.+|+.. +...||.|+...+..
T Consensus       180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~  230 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE  230 (238)
T ss_dssp             CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred             CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence            46799999998866544 39999999999999975 356999999876544

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=93.70  E-value=0.062  Score=55.82  Aligned_cols=65  Identities=18%  Similarity=0.357  Sum_probs=54.5

Q ss_pred             CCCccCcCccccCCCceec-cCccc--ccHHHHHHHHH-cCCCCCCCCCccccCCCCcccHHHHhhHHH
Q 039015          278 PDDFTCPISLEIMKDPVTL-STGHT--YDRASILKWFR-AGNSTCPKTGERLQSKELLVNLVLKRIIQD  342 (685)
Q Consensus       278 ~~~~~CpIc~~~m~dPv~~-~cght--fcr~ci~~~~~-~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~  342 (685)
                      .-.+.||++...|..|+.- .|.|.  |+...+..+.. .+...||.|++.+...++..+..+..++..
T Consensus       213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~  281 (360)
T 4fo9_A          213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND  281 (360)
T ss_dssp             EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred             EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence            3458999999999999976 79998  88877766665 357799999999998899999988887754

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=93.70  E-value=4.6  Score=37.86  Aligned_cols=215  Identities=14%  Similarity=0.149  Sum_probs=142.0

Q ss_pred             hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhc-CCCHHHHHHHHHHhhccccCcchh
Q 039015          377 MKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLS-SKDSSTQENAIAALLNLSKHCKSK  455 (685)
Q Consensus       377 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~-s~~~~~~~~A~~aL~nLs~~~~~k  455 (685)
                      .+..+..++..|...-..+|.+|+..|..+++.-++....+     +..|+.+++ +........-..+++.++.-... 
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe-  103 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE-  103 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH-
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH-
Confidence            34567888888887778899999999999998666554444     335555554 34445544555666666532211 


Q ss_pred             HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC
Q 039015          456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH  535 (685)
Q Consensus       456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~  535 (685)
                        ++ .+.+|.|..-..-| ++..+.+...+|-.++..+  -..++   +++.-+..++.+.+..-+-.|+..|..|   
T Consensus       104 --~v-~~vVp~lfanyrig-d~kikIn~~yaLeeIaran--P~l~~---~v~rdi~smltskd~~Dkl~aLnFi~al---  171 (253)
T 2db0_A          104 --LV-KSMIPVLFANYRIG-DEKTKINVSYALEEIAKAN--PMLMA---SIVRDFMSMLSSKNREDKLTALNFIEAM---  171 (253)
T ss_dssp             --HH-HHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHC--HHHHH---HHHHHHHHHTSCSSHHHHHHHHHHHHTC---
T ss_pred             --HH-HhhHHHHHHHHhcC-CccceecHHHHHHHHHHhC--hHHHH---HHHHHHHHHhcCCChHHHHHHHHHHHHH---
Confidence              11 23456666666778 9999999999999887633  22232   3567788889888866666666666544   


Q ss_pred             CCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-hhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHH
Q 039015          536 SGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK-LDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLL  614 (685)
Q Consensus       536 ~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~-~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~  614 (685)
                      .+|..+-+. -.+|.|..+| .+.+.-++..|+.+|.++|.. +.-|..|.      ..++-+.+. |..++..-...|.
T Consensus       172 Gen~~~yv~-PfLprL~aLL-~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~-S~lv~~~V~egL~  242 (253)
T 2db0_A          172 GENSFKYVN-PFLPRIINLL-HDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDT-SSLVNKTVKEGIS  242 (253)
T ss_dssp             CTTTHHHHG-GGHHHHHGGG-GCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCS-CHHHHHHHHHHHH
T ss_pred             hccCccccC-cchHHHHHHH-cCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCc-HHHHHHHHHHHHH
Confidence            455544432 2578888899 788899999999999999985 44333332      234445555 7777776666666


Q ss_pred             HHhc
Q 039015          615 ALCI  618 (685)
Q Consensus       615 ~L~~  618 (685)
                      .|..
T Consensus       243 rl~l  246 (253)
T 2db0_A          243 RLLL  246 (253)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=92.50  E-value=3.6  Score=43.49  Aligned_cols=177  Identities=17%  Similarity=0.159  Sum_probs=114.2

Q ss_pred             HHHHhcCCC-HHHHHHHHHHHHHHhhcCCchh-hHHHhhCCHHHHHHhhcC-----------CCHHHHHHHHHHhhcccc
Q 039015          384 ISDRLLEGT-SEEKNKVAYEVRLLTKSSIFNR-SCLVEVGCIPSLLKLLSS-----------KDSSTQENAIAALLNLSK  450 (685)
Q Consensus       384 Lv~~L~s~~-~~~~~~a~~~L~~La~~~~~~r-~~i~~~G~ip~Lv~lL~s-----------~~~~~~~~A~~aL~nLs~  450 (685)
                      .+..|.++. .+...+.+..|+.--..++... ..|. .+|+..|+.+|..           .+...+..++.+|..+-.
T Consensus        71 yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN  149 (383)
T 3eg5_B           71 YIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN  149 (383)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc
Confidence            355555543 2222345566665444443332 2344 6788999998852           245788888999988888


Q ss_pred             CcchhHHHH-hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh--H-HHH----------hhcCCCcHHHHHHHhcc
Q 039015          451 HCKSKSMVV-ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE--Y-RKL----------IGENPEAIPALVDMVRD  516 (685)
Q Consensus       451 ~~~~k~~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~-~~~----------i~~~~g~i~~Lv~lL~~  516 (685)
                      +..+...++ ...++..|+..|.+. ++.++..|+.+|..+|..++  + ...          .++ ..-+..++..|++
T Consensus       150 ~~~G~~~vl~~~~~i~~l~~~L~s~-~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e-~~RF~~lv~~L~~  227 (383)
T 3eg5_B          150 NKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE-VERFQPLLDGLKS  227 (383)
T ss_dssp             SHHHHHHHHTCSSHHHHHHHTCCTT-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHT-SCTTHHHHHTTST
T ss_pred             chhhHHHHHcChHHHHHHHHHhCCC-chHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCC-CCcHHHHHHHHHc
Confidence            888877777 468899999999888 89999999999988876543  1 221          233 5668889999987


Q ss_pred             -CCHHHHHHHHHHHHHhcCCCC-------cHHHHHhcCChHHHHHHhccCCChhHH
Q 039015          517 -GTDRSKKNALVAIFGLLMHSG-------NHWRFLAAGAVPLLLNLLTSSDSEELI  564 (685)
Q Consensus       517 -~~~~~~~~A~~aL~nLs~~~~-------n~~~iv~~G~v~~Lv~lL~~~~~~~~~  564 (685)
                       .+.+.+..++..|-.+....+       -|..+...|..+.+-. |....++.+.
T Consensus       228 ~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~~~~~~L~  282 (383)
T 3eg5_B          228 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LREIENEDMK  282 (383)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTTSCCHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-HhcCCChhHH
Confidence             456666655555555555444       2444566776665555 5444454443

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=92.36  E-value=2.4  Score=41.52  Aligned_cols=176  Identities=17%  Similarity=0.180  Sum_probs=109.0

Q ss_pred             HHHhcCCC-HHHHHHHHHHHHHHhhcCCchhh-HHHhhCCHHHHHHhhcC----C-------CHHHHHHHHHHhhccccC
Q 039015          385 SDRLLEGT-SEEKNKVAYEVRLLTKSSIFNRS-CLVEVGCIPSLLKLLSS----K-------DSSTQENAIAALLNLSKH  451 (685)
Q Consensus       385 v~~L~s~~-~~~~~~a~~~L~~La~~~~~~r~-~i~~~G~ip~Lv~lL~s----~-------~~~~~~~A~~aL~nLs~~  451 (685)
                      ++.|+++. .+.-.+.+..|+..-+.++..+. .| ..||+..|+.+|..    .       +...+..++.+|..+..+
T Consensus         6 i~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~   84 (233)
T 2f31_A            6 IQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN   84 (233)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCC
Confidence            45554442 22223344555544443433222 23 46888888887754    1       456778888899888878


Q ss_pred             cchhHHHH-hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh--H-HHHh----------hcCCCcHHHHHHHhcc-
Q 039015          452 CKSKSMVV-ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE--Y-RKLI----------GENPEAIPALVDMVRD-  516 (685)
Q Consensus       452 ~~~k~~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~-~~~i----------~~~~g~i~~Lv~lL~~-  516 (685)
                      ..+...++ ..+++..|+..|.+. +..++..++.+|..+|..++  . ...+          ++ ..-+..+++.+++ 
T Consensus        85 ~~G~~~vl~~~~~i~~l~~~L~s~-~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e-~~RF~~lv~~l~~~  162 (233)
T 2f31_A           85 KFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE-VERFQPLLDGLKSG  162 (233)
T ss_dssp             HHHHHHHHTSSSHHHHHHTTCCTT-SHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHT-SCTTHHHHHTTSTT
T ss_pred             hHHHHHHHcCcHHHHHHHHHhCCC-CchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCC-cchHHHHHHHHhcC
Confidence            88877777 467899999999887 89999999988887776543  2 2222          23 5567888988875 


Q ss_pred             CCHHHHHHHHHHHHHhcCCCCc-------HHHHHhcCChHHHHHHhccCCChhHH
Q 039015          517 GTDRSKKNALVAIFGLLMHSGN-------HWRFLAAGAVPLLLNLLTSSDSEELI  564 (685)
Q Consensus       517 ~~~~~~~~A~~aL~nLs~~~~n-------~~~iv~~G~v~~Lv~lL~~~~~~~~~  564 (685)
                      ++.+.+..++..+-.+....++       |..+...|..+.+ .-|....++.+.
T Consensus       163 ~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il-~~l~~~~~~~L~  216 (233)
T 2f31_A          163 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL-QELREIENEDMK  216 (233)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHH-HHHHHCCCHHHH
T ss_pred             ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHH-HHHhccCCHHHH
Confidence            4456665555555555555442       4445666655554 444344454443

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=90.94  E-value=4.8  Score=39.25  Aligned_cols=145  Identities=19%  Similarity=0.172  Sum_probs=98.4

Q ss_pred             hcCcHHHHHHHhcC----CC------CHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHH
Q 039015          460 ESGGLDFIVDMVKK----GL------KVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAI  529 (685)
Q Consensus       460 ~~g~i~~Lv~lL~~----~~------~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL  529 (685)
                      ..||+..|+.+|..    +.      +.+....++..|..+..+......+...++++..|+..|.+.++.++..++..|
T Consensus        41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL  120 (233)
T 2f31_A           41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL  120 (233)
T ss_dssp             HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            46788888888752    21      235567788888888877766666666688999999999888899999999999


Q ss_pred             HHhcCCCC--c-HHHHHhc----------CChHHHHHHhccCCChhHHHHHHHHHHHHhcChhc---HHHH---HhcCCh
Q 039015          530 FGLLMHSG--N-HWRFLAA----------GAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDG---TIAI---LHHGAL  590 (685)
Q Consensus       530 ~nLs~~~~--n-~~~iv~~----------G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~---~~~i---~~~g~v  590 (685)
                      ..+|..++  + ...+.++          .-...+++.|..+.+.+....++..+-.+...++.   |..+   ...-|+
T Consensus       121 ~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl  200 (233)
T 2f31_A          121 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL  200 (233)
T ss_dssp             HHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTH
T ss_pred             HHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh
Confidence            99997765  5 5554332          35667888885555667777777777666665433   2222   223456


Q ss_pred             HHHHHHhhcCCChh
Q 039015          591 DMIMKILDSCTSRA  604 (685)
Q Consensus       591 ~~Lv~lL~~~~s~~  604 (685)
                      ..+++-++...++.
T Consensus       201 ~~il~~l~~~~~~~  214 (233)
T 2f31_A          201 HQVLQELREIENED  214 (233)
T ss_dssp             HHHHHHHHHCCCHH
T ss_pred             HHHHHHHhccCCHH
Confidence            66666555432443

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=90.72  E-value=0.66  Score=45.93  Aligned_cols=171  Identities=13%  Similarity=0.115  Sum_probs=87.9

Q ss_pred             CchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 039015          411 IFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYI  490 (685)
Q Consensus       411 ~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~L  490 (685)
                      +..|......=....|..++.+++..++..++..|   .              .+.|..+++.. +.++|..++..   |
T Consensus        64 ~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L---~--------------~~~L~~ll~D~-d~~VR~~aA~~---l  122 (244)
T 1lrv_A           64 WERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRL---P--------------REQLSALMFDE-DREVRITVADR---L  122 (244)
T ss_dssp             HHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTS---C--------------SGGGGGTTTCS-CHHHHHHHHHH---S
T ss_pred             HHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHC---C--------------HHHHHHHHcCC-CHHHHHHHHHh---C
Confidence            44555555543345566677788888888888642   1              13455566666 77888777663   2


Q ss_pred             cCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHH
Q 039015          491 ASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAV  570 (685)
Q Consensus       491 s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~  570 (685)
                      .               .+.|..++++++..++..++..   +              ..+.+..++ .+++..++..++..
T Consensus       123 ~---------------~~~L~~L~~D~d~~VR~~aA~~---l--------------~~~~l~~l~-~D~d~~VR~~aa~~  169 (244)
T 1lrv_A          123 P---------------LEQLEQMAADRDYLVRAYVVQR---I--------------PPGRLFRFM-RDEDRQVRKLVAKR  169 (244)
T ss_dssp             C---------------TGGGGGGTTCSSHHHHHHHHHH---S--------------CGGGGGGTT-TCSCHHHHHHHHHH
T ss_pred             C---------------HHHHHHHHcCCCHHHHHHHHHh---c--------------CHHHHHHHH-cCCCHHHHHHHHHc
Confidence            1               1234455666667777766652   1              012222333 45555555555442


Q ss_pred             HHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHH-----HHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcC
Q 039015          571 LATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSL-----LLALCINGGANVVALLVKSPSLMGSLYSLLSQG  645 (685)
Q Consensus       571 L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~-----L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g  645 (685)
                         +              +.+.+..++++. ++.++..++..     |..+..+....++..+....| .+.|..| .+.
T Consensus       170 ---l--------------~~~ll~~ll~D~-d~~VR~aaa~~l~~~~L~~Ll~D~d~~VR~~aa~~l~-~~~L~~L-~D~  229 (244)
T 1lrv_A          170 ---L--------------PEESLGLMTQDP-EPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHAS-LEALREL-DEP  229 (244)
T ss_dssp             ---S--------------CGGGGGGSTTCS-SHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHHSC-HHHHHHC-CCC
T ss_pred             ---C--------------CHHHHHHHHcCC-CHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHcCC-HHHHHHc-cCC
Confidence               1              012222233433 44444444422     222223333334444433233 4566666 777


Q ss_pred             ChHHHHHHHH
Q 039015          646 SSRASKKASA  655 (685)
Q Consensus       646 ~~~~k~~A~~  655 (685)
                      +..++..|..
T Consensus       230 ~~~VR~aa~~  239 (244)
T 1lrv_A          230 DPEVRLAIAG  239 (244)
T ss_dssp             CHHHHHHHHC
T ss_pred             CHHHHHHHHH
Confidence            8888777654

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=90.63  E-value=5.6  Score=47.30  Aligned_cols=220  Identities=10%  Similarity=0.134  Sum_probs=122.3

Q ss_pred             CCCHHHHHHHHHHHHHHhhcCCchhhHHH---h-hCCHHH----HHHhhcCC---CHHHHHHHHHHhhccccCcchhHHH
Q 039015          390 EGTSEEKNKVAYEVRLLTKSSIFNRSCLV---E-VGCIPS----LLKLLSSK---DSSTQENAIAALLNLSKHCKSKSMV  458 (685)
Q Consensus       390 s~~~~~~~~a~~~L~~La~~~~~~r~~i~---~-~G~ip~----Lv~lL~s~---~~~~~~~A~~aL~nLs~~~~~k~~i  458 (685)
                      +.+...+..|+.++..++.........+.   . ....+.    ++..|.++   .+-++..|+++|..++..- .+.. 
T Consensus       416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~-  493 (960)
T 1wa5_C          416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ-  493 (960)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH-
T ss_pred             chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH-
Confidence            45677888999999999853211110000   0 022222    23334555   7899999999999988653 1221 


Q ss_pred             HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh---------HHHHhhc-CCCcHHHHHHHhccCC--H-H--HHH
Q 039015          459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE---------YRKLIGE-NPEAIPALVDMVRDGT--D-R--SKK  523 (685)
Q Consensus       459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~---------~~~~i~~-~~g~i~~Lv~lL~~~~--~-~--~~~  523 (685)
                       -...++.++..|... +..++..|+.+|.+++...+         .+..+.. -...++.|+.++....  + .  ...
T Consensus       494 -l~~~l~~l~~~L~d~-~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e  571 (960)
T 1wa5_C          494 -LIELMPILATFLQTD-EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE  571 (960)
T ss_dssp             -HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred             -HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence             244678888888877 89999999999999887421         2333322 0135556666666641  1 1  223


Q ss_pred             HHHHHHHHhcC--CCCcHHHHHhcCChHHHHHHhc----cCCChhHHHHHHHHHHHHhcC--hhcHHHHHhcCChHHHHH
Q 039015          524 NALVAIFGLLM--HSGNHWRFLAAGAVPLLLNLLT----SSDSEELITDSLAVLATLAEK--LDGTIAILHHGALDMIMK  595 (685)
Q Consensus       524 ~A~~aL~nLs~--~~~n~~~iv~~G~v~~Lv~lL~----~~~~~~~~~~al~~L~~La~~--~~~~~~i~~~g~v~~Lv~  595 (685)
                      .+..+|..++.  .++... ... ..++.|+..+.    +..+......++.+|..++..  ++....+. ...+|.+..
T Consensus       572 ~l~~al~~vv~~~~~~~~p-~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~-~~~~p~~~~  648 (960)
T 1wa5_C          572 FLMRSIFRVLQTSEDSIQP-LFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTFLT  648 (960)
T ss_dssp             HHHHHHHHHHHHHTTTTGG-GHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhh-HHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH-HHHHHHHHH
Confidence            55566655532  122221 111 14455555553    233556666677777777654  33333332 223577777


Q ss_pred             HhhcCCChhHHHHHHHHHHHHh
Q 039015          596 ILDSCTSRAGKEYCVSLLLALC  617 (685)
Q Consensus       596 lL~~~~s~~~~e~a~~~L~~L~  617 (685)
                      +|... .....+.+..++..+.
T Consensus       649 iL~~~-~~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          649 VFSED-IQEFIPYVFQIIAFVV  669 (960)
T ss_dssp             HHHTT-CTTTHHHHHHHHHHHH
T ss_pred             HHHhh-hHhhHHHHHHHHHHHH
Confidence            77654 4455666666655554

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=90.54  E-value=1.4  Score=44.05  Aligned_cols=141  Identities=14%  Similarity=0.074  Sum_probs=94.3

Q ss_pred             CHHHHHHHHHHHHHhcC---chhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHH
Q 039015          476 KVEARQHAAATLFYIAS---IEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLL  552 (685)
Q Consensus       476 ~~e~~~~Aa~~L~~Ls~---~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv  552 (685)
                      +..+...+..+|..+..   ..+++-.-.+..-.+|.|++-+.+..+.++..+-.+|..|+.-      .--..+++.++
T Consensus       100 N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~  173 (266)
T 2of3_A          100 NPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLL  173 (266)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHH
Confidence            66676677766666532   1111111111023689999998777788888777777666421      11223566677


Q ss_pred             HHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCCh---HHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHH
Q 039015          553 NLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGAL---DMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALL  628 (685)
Q Consensus       553 ~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v---~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l  628 (685)
                      +-+ .+.+...++.++..+..+-... |..   ...++   +.+..++.+. +..+++.|+.++..+..+.|+.+...+
T Consensus       174 ~g~-ksKN~R~R~e~l~~l~~li~~~-G~~---~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~~~Gd~v~k~l  246 (266)
T 2of3_A          174 DAL-KSKNARQRSECLLVIEYYITNA-GIS---PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFKFEGDQMWKAA  246 (266)
T ss_dssp             HGG-GCSCHHHHHHHHHHHHHHHHHH-CSG---GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             HHH-ccCCHHHHHHHHHHHHHHHHhc-CCC---ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            777 5667889999999888885532 222   23468   8899999987 999999999999988887667666554

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=89.78  E-value=10  Score=40.87  Aligned_cols=123  Identities=16%  Similarity=0.192  Sum_probs=91.4

Q ss_pred             cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHH
Q 039015          389 LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIV  468 (685)
Q Consensus       389 ~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv  468 (685)
                      ..|+..++.-|+.-|...-+.-++....-     |..+++|..+.|..+|..|+..|-.++.+ ++-.+     ....|+
T Consensus        38 ~kg~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~  106 (507)
T 3u0r_A           38 VKGGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----VADILT  106 (507)
T ss_dssp             GGSCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHH
Confidence            45788999999999999888777766544     66889999999999999999999999988 44333     467889


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHH
Q 039015          469 DMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFG  531 (685)
Q Consensus       469 ~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~n  531 (685)
                      ++|+.. +.......-.+|..|-..+. +       +.+..|..-+..+++.++..++..|..
T Consensus       107 QlLqtd-d~~E~~~V~~sL~sllk~Dp-k-------~tl~~lf~~i~~~~e~~Rer~lkFi~~  160 (507)
T 3u0r_A          107 QLLQTD-DSAEFNLVNNALLSIFKMDA-K-------GTLGGLFSQILQGEDIVRERAIKFLST  160 (507)
T ss_dssp             HHTTCC-CHHHHHHHHHHHHHHHHHCH-H-------HHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHhcc-chHHHHHHHHHHHHHHhcCh-H-------HHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            999988 66666666666666544332 2       344556665666778888888877643

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=89.07  E-value=6.2  Score=41.66  Aligned_cols=179  Identities=17%  Similarity=0.184  Sum_probs=111.2

Q ss_pred             HHHHhcCCCHHH-HHHHHHHHHHHhhcCCchhh-HHHhhCCHHHHHHhhcC-----------CCHHHHHHHHHHhhcccc
Q 039015          384 ISDRLLEGTSEE-KNKVAYEVRLLTKSSIFNRS-CLVEVGCIPSLLKLLSS-----------KDSSTQENAIAALLNLSK  450 (685)
Q Consensus       384 Lv~~L~s~~~~~-~~~a~~~L~~La~~~~~~r~-~i~~~G~ip~Lv~lL~s-----------~~~~~~~~A~~aL~nLs~  450 (685)
                      .++.|.++.... -.+.+..|+..-+.++..+. .| ..||+..|+.+|..           .+...+..++.+|..+..
T Consensus         9 yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN   87 (386)
T 2bnx_A            9 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN   87 (386)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC
Confidence            355565543222 22344555554444433222 22 36788888887753           145678888889888888


Q ss_pred             CcchhHHHH-hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh--H-HHH----------hhcCCCcHHHHHHHhcc
Q 039015          451 HCKSKSMVV-ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE--Y-RKL----------IGENPEAIPALVDMVRD  516 (685)
Q Consensus       451 ~~~~k~~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~-~~~----------i~~~~g~i~~Lv~lL~~  516 (685)
                      +..+...++ ..+++..|+..|... ++.++..++.+|..+|..++  . ...          .++ ..-+..||+.+.+
T Consensus        88 ~~~Gl~~vl~~~~~i~~l~~sL~s~-~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e-~~RF~~lv~~l~~  165 (386)
T 2bnx_A           88 NKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE-VERFQPLLDGLKS  165 (386)
T ss_dssp             SHHHHHHHHHSSSHHHHHHHTCCTT-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHT-SCTTHHHHHHTST
T ss_pred             CHHHHHHHHcCcHHHHHHHHHhCCC-CchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCc-hhhHHHHHHHHHc
Confidence            887877666 568899999999877 88999999888877776543  2 222          223 5567889998874


Q ss_pred             C-CHHHHHHHHHHHHHhcCCCCc-------HHHHHhcCChHHHHHHhccCCChhHHHH
Q 039015          517 G-TDRSKKNALVAIFGLLMHSGN-------HWRFLAAGAVPLLLNLLTSSDSEELITD  566 (685)
Q Consensus       517 ~-~~~~~~~A~~aL~nLs~~~~n-------~~~iv~~G~v~~Lv~lL~~~~~~~~~~~  566 (685)
                      + +.+.+..++..+-.|....++       |..+...|..+.| .-|....++.+...
T Consensus       166 ~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il-~~Lr~~~~~~L~~Q  222 (386)
T 2bnx_A          166 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL-QELREIENEDMKVQ  222 (386)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHH-HHHTTCCCHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHH-HHHhccCChhHHHH
Confidence            4 456665555555555555542       5556667765555 45544455554433

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=88.68  E-value=0.25  Score=49.04  Aligned_cols=66  Identities=15%  Similarity=0.186  Sum_probs=40.1

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCc
Q 039015          384 ISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGG  463 (685)
Q Consensus       384 Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~  463 (685)
                      |...+...++.+|..++..|                  ..+.|..++.+++..++..++..|   +              
T Consensus        79 l~~L~~D~~~~VR~~aA~~L------------------~~~~L~~ll~D~d~~VR~~aA~~l---~--------------  123 (244)
T 1lrv_A           79 LTPLIRDSDEVVRRAVAYRL------------------PREQLSALMFDEDREVRITVADRL---P--------------  123 (244)
T ss_dssp             GGGGTTCSSHHHHHHHHTTS------------------CSGGGGGTTTCSCHHHHHHHHHHS---C--------------
T ss_pred             HHHHccCcCHHHHHHHHHHC------------------CHHHHHHHHcCCCHHHHHHHHHhC---C--------------
Confidence            34444666777777666431                  124677788888999998888743   1              


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHH
Q 039015          464 LDFIVDMVKKGLKVEARQHAAA  485 (685)
Q Consensus       464 i~~Lv~lL~~~~~~e~~~~Aa~  485 (685)
                      .+.+..+++.. +.++|..++.
T Consensus       124 ~~~L~~L~~D~-d~~VR~~aA~  144 (244)
T 1lrv_A          124 LEQLEQMAADR-DYLVRAYVVQ  144 (244)
T ss_dssp             TGGGGGGTTCS-SHHHHHHHHH
T ss_pred             HHHHHHHHcCC-CHHHHHHHHH
Confidence            11233344444 6777776665

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=87.92  E-value=12  Score=39.38  Aligned_cols=143  Identities=17%  Similarity=0.172  Sum_probs=99.2

Q ss_pred             HHHHhcCcHHHHHHHhcC----C------CCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHH
Q 039015          456 SMVVESGGLDFIVDMVKK----G------LKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNA  525 (685)
Q Consensus       456 ~~i~~~g~i~~Lv~lL~~----~------~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A  525 (685)
                      ..+. .+|+..|+.+|..    +      .+......++..|..+.-+......+...+.+|..|+..|.+.++.+++.|
T Consensus       104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~a  182 (383)
T 3eg5_B          104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDA  182 (383)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHH
T ss_pred             HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHH
Confidence            3444 7789999999851    1      123566778888888887776666666668999999999999899999999


Q ss_pred             HHHHHHhcCCCC--c-HHHHHh----------cCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhc---HH----HHH
Q 039015          526 LVAIFGLLMHSG--N-HWRFLA----------AGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDG---TI----AIL  585 (685)
Q Consensus       526 ~~aL~nLs~~~~--n-~~~iv~----------~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~---~~----~i~  585 (685)
                      +..|..+|..++  + ...+++          .+-...++..|....+.+....++..+-.+...++.   |.    ++.
T Consensus       183 leLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~  262 (383)
T 3eg5_B          183 AKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELM  262 (383)
T ss_dssp             HHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            999999998764  4 444433          345778888885545677777777776666664432   22    233


Q ss_pred             hcCChHHHHHHhhcC
Q 039015          586 HHGALDMIMKILDSC  600 (685)
Q Consensus       586 ~~g~v~~Lv~lL~~~  600 (685)
                      .. |+..++.-|+..
T Consensus       263 ~~-Gl~~il~~lr~~  276 (383)
T 3eg5_B          263 RL-GLHQVLQELREI  276 (383)
T ss_dssp             HT-THHHHHHHHTTS
T ss_pred             HC-ChHHHHHHHhcC
Confidence            43 555566556654

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=85.38  E-value=1.1  Score=49.12  Aligned_cols=184  Identities=17%  Similarity=0.159  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH-hcCcHHHHHHHhcC
Q 039015          395 EKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV-ESGGLDFIVDMVKK  473 (685)
Q Consensus       395 ~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~-~~g~i~~Lv~lL~~  473 (685)
                      +|..|+.+|..+ ..-+..      ..++..|+..+....-+++-.++-.|..+      ++.+. =.++++.++.-|+.
T Consensus       244 VRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D  310 (800)
T 3oc3_A          244 VRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSS  310 (800)
T ss_dssp             HHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCC
Confidence            455666666666 433322      33444555555667788999999998888      11111 25678888888888


Q ss_pred             CCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCC--HHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHH
Q 039015          474 GLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGT--DRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLL  551 (685)
Q Consensus       474 ~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~L  551 (685)
                      . +.+++..||.+|..++ .++.   +   ...+..|-+.|.+-+  .......+..|..|+.++.+.  ......||.|
T Consensus       311 ~-DDDVRAVAAetLiPIA-~p~~---l---~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a--~~dp~LVPRL  380 (800)
T 3oc3_A          311 P-DEDIKLLSAELLCHFP-ITDS---L---DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL--SIPPERLKDI  380 (800)
T ss_dssp             S-SHHHHHHHHHHHTTSC-CSST---H---HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--CCCSGGGGGT
T ss_pred             c-ccHHHHHHHHHhhhhc-chhh---H---HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc--ccChHHHHHH
Confidence            8 8999999999999998 1111   1   113333444444322  223344455666665554321  1123677888


Q ss_pred             HHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHH-HhhcCCChhHHHHHHHHH
Q 039015          552 LNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMK-ILDSCTSRAGKEYCVSLL  613 (685)
Q Consensus       552 v~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~-lL~~~~s~~~~e~a~~~L  613 (685)
                      .-.| ..+-..++..++.+|..+.          ....+..+.+ +|=.. ++.+.+.+..+.
T Consensus       381 ~PFL-RHtITSVR~AVL~TL~tfL----------~~~~LRLIFQNILLE~-neeIl~lS~~VW  431 (800)
T 3oc3_A          381 FPCF-TSPVPEVRTSILNMVKNLS----------EESIDFLVAEVVLIEE-KDEIREMAIKLL  431 (800)
T ss_dssp             GGGG-TCSSHHHHHHHHHHTTTCC----------CHHHHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred             Hhhh-cCCcHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHhCC-cHHHHHHHHHHH
Confidence            8888 5667889999988887776          1112444444 33333 667777666655

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=85.36  E-value=4.8  Score=43.34  Aligned_cols=121  Identities=19%  Similarity=0.178  Sum_probs=80.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhc-CchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHH
Q 039015          472 KKGLKVEARQHAAATLFYIA-SIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPL  550 (685)
Q Consensus       472 ~~~~~~e~~~~Aa~~L~~Ls-~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~  550 (685)
                      .+| +..++..|+..+.... ..++..      ..+|.++++|..+.+..+++.|+..|..+|.+ ++..+++     ..
T Consensus        38 ~kg-~~k~K~LaaQ~I~kffk~FP~l~------~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~kia-----Dv  104 (507)
T 3u0r_A           38 VKG-GTKEKRLAAQFIPKFFKHFPELA------DSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRVA-----DI  104 (507)
T ss_dssp             GGS-CHHHHHHHHHHHHHHGGGCGGGH------HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHHH-----HH
T ss_pred             cCC-CHHHHHHHHHHHHHHHhhChhhH------HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhHH-----HH
Confidence            356 7899999999987654 444544      23688999999999999999999999999988 7766655     45


Q ss_pred             HHHHhccCCChhHHHHHHHHHHHHh-cChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHH
Q 039015          551 LLNLLTSSDSEELITDSLAVLATLA-EKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLA  615 (685)
Q Consensus       551 Lv~lL~~~~~~~~~~~al~~L~~La-~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~  615 (685)
                      |+++|.++.. .-...+-..|..|- .++.        +.+..+..-+..+ .+.+++.++..|..
T Consensus       105 L~QlLqtdd~-~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~-~e~~Rer~lkFi~~  160 (507)
T 3u0r_A          105 LTQLLQTDDS-AEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQG-EDIVRERAIKFLST  160 (507)
T ss_dssp             HHHHTTCCCH-HHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             HHHHHhccch-HHHHHHHHHHHHHHhcChH--------HHHHHHHHHHccc-chHHHHHHHHHHHH
Confidence            9999964433 32333333333332 2222        1234444433345 77788887777744

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=83.35  E-value=11  Score=38.71  Aligned_cols=110  Identities=16%  Similarity=0.175  Sum_probs=88.4

Q ss_pred             HhhccccCcch-hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhc-cCCHHH
Q 039015          444 ALLNLSKHCKS-KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR-DGTDRS  521 (685)
Q Consensus       444 aL~nLs~~~~~-k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~  521 (685)
                      -|+||-.++.| -.-++..+++..+..+.+.. +.++.......|...|.....+..= - ...+|.++..+. ++++++
T Consensus       265 DLL~LLmHdSnAIDGFVk~DGv~~I~TvinYp-N~~l~RaG~KLLLQVSDaksL~~t~-L-~e~LPFi~~~i~~h~eDdv  341 (619)
T 3c2g_A          265 DLLGLLLHDSDAIDGFVRSDGVGAITTVVQYP-NNDLIRAGCKLLLQVSDAKALAKTP-L-ENILPFLLRLIEIHPDDEV  341 (619)
T ss_dssp             HHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHTTCGGGGTSC-C-TTHHHHHHHHHHHCCCHHH
T ss_pred             HHHHHHhcccccccceeecccceeEEEEeecC-CcHHHHhhhheeeeecchHHHhhcc-c-cccchHHHHHhccCCCcce
Confidence            35677777766 67888999999999999999 8999888888888887655433222 1 457899999886 677888


Q ss_pred             HHHHHHHHHHhcCCCC-cHHHHHhcCChHHHHHHhc
Q 039015          522 KKNALVAIFGLLMHSG-NHWRFLAAGAVPLLLNLLT  556 (685)
Q Consensus       522 ~~~A~~aL~nLs~~~~-n~~~iv~~G~v~~Lv~lL~  556 (685)
                      .-...+.|.|...+.. .+...+..|+++.|-..+.
T Consensus       342 vYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~  377 (619)
T 3c2g_A          342 IYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS  377 (619)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             EEecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence            8899999999998775 6777899999999988874

>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1

Probab=83.28  E-value=3  Score=33.74  Aligned_cols=48  Identities=23%  Similarity=0.312  Sum_probs=37.3

Q ss_pred             CCccCcCccccCC-----Cceec--cCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015          279 DDFTCPISLEIMK-----DPVTL--STGHTYDRASILKWFRAGNSTCPKTGERLQ  326 (685)
Q Consensus       279 ~~~~CpIc~~~m~-----dPv~~--~cghtfcr~ci~~~~~~~~~~CP~c~~~l~  326 (685)
                      ..-.|.||.+-.-     +|.+.  .|+...||.|++-=.++|+..||.|+....
T Consensus        15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk   69 (93)
T 1weo_A           15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK   69 (93)
T ss_dssp             SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred             CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence            4468999997643     22222  588899999998888889999999988775

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=82.59  E-value=26  Score=36.86  Aligned_cols=144  Identities=17%  Similarity=0.150  Sum_probs=98.5

Q ss_pred             cCcHHHHHHHhcC----CC------CHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHH
Q 039015          461 SGGLDFIVDMVKK----GL------KVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIF  530 (685)
Q Consensus       461 ~g~i~~Lv~lL~~----~~------~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~  530 (685)
                      .+|+..|+.+|..    +.      +......++..|..+.-+......+...+++|..|+..|.+.++.++..++..|.
T Consensus        46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~  125 (386)
T 2bnx_A           46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS  125 (386)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            6788888888751    11      2455677888888888777666666666899999999998888999999999999


Q ss_pred             HhcCCCC--c-HHHHHh----------cCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhc-------HHHHHhcCCh
Q 039015          531 GLLMHSG--N-HWRFLA----------AGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDG-------TIAILHHGAL  590 (685)
Q Consensus       531 nLs~~~~--n-~~~iv~----------~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~-------~~~i~~~g~v  590 (685)
                      .+|..++  + ...+++          ..-...+|+.|..+.+.++...++..+-.+...++.       |.++.. -|+
T Consensus       126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~-~GL  204 (386)
T 2bnx_A          126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMR-LGL  204 (386)
T ss_dssp             HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH-TTH
T ss_pred             HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-CCh
Confidence            9997664  4 444332          335677888885556677777777777777665443       233444 356


Q ss_pred             HHHHHHhhcCCChhH
Q 039015          591 DMIMKILDSCTSRAG  605 (685)
Q Consensus       591 ~~Lv~lL~~~~s~~~  605 (685)
                      ..++.-|+...++..
T Consensus       205 ~~il~~Lr~~~~~~L  219 (386)
T 2bnx_A          205 HQVLQELREIENEDM  219 (386)
T ss_dssp             HHHHHHHTTCCCHHH
T ss_pred             HHHHHHHhccCChhH
Confidence            666665554324443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	685
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	4e-21
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-15
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	9e-13
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-11
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	7e-05
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	8e-04
d2c2la2	80	g.44.1.2 (A:225-304) STIP1 homology and U box-cont	2e-15
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	2e-13
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	4e-12
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	7e-12
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-11
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-09
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-06
d1wgma_	98	g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu	3e-11
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	5e-10
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	4e-07
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-06
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	4e-06
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	4e-06
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	6e-10
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	2e-09
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	6e-08
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	1e-08
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	3e-07
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	2e-04
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	2e-06
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	3e-06
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	8e-06
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	2e-05
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	7e-05
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	9e-05
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	2e-04
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	3e-04

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 85.5 bits (211), Expect = 4e-21
 Identities = 40/72 (55%), Positives = 49/72 (68%)

Query: 278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLK 337
           P+ F CPISLE+MKDPV +STG TY+R+SI KW  AG+ TCPK+ E L    L  N VLK
Sbjct: 6   PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLK 65

Query: 338 RIIQDWSVDNGV 349
            +I  W   NG+
Sbjct: 66  SLIALWCESNGI 77

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.6 bits (189), Expect = 1e-15
 Identities = 42/194 (21%), Positives = 74/194 (38%), Gaps = 3/194 (1%)

Query: 421 GCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS-KSMVVESGGLDFIVDMVKKGLKVEA 479
             IP L KLL+ +D      A   +  LSK   S  +++     +  IV  ++    VE 
Sbjct: 17  RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 76

Query: 480 RQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAI-FGLLMHSGN 538
            +  A TL  ++   E    I ++   IPALV M+    D     A+  +   LL   G 
Sbjct: 77  ARCTAGTLHNLSHHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA 135

Query: 539 HWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILD 598
                 AG +  ++ LL  ++ + L   +  +        +  + IL  G    ++ I+ 
Sbjct: 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195

Query: 599 SCTSRAGKEYCVSL 612
           + T          +
Sbjct: 196 TYTYEKLLWTTSRV 209

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (166), Expect = 9e-13
 Identities = 36/188 (19%), Positives = 56/188 (29%), Gaps = 22/188 (11%)

Query: 388 LLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLN 447
           L   +     K    +         N + L E G IP L++LL      TQ         
Sbjct: 364 LHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 423

Query: 448 LSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAI 507
                                  V+     E  +     L  +A     R +I      I
Sbjct: 424 QQ--------------------FVEGVRMEEIVEGCTGALHILARDVHNRIVIRGL-NTI 462

Query: 508 PALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDS 567
           P  V ++    +  ++ A   +  L           A GA   L  LL  S +E + T +
Sbjct: 463 PLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL-HSRNEGVATYA 521

Query: 568 LAVLATLA 575
            AVL  ++
Sbjct: 522 AAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (153), Expect = 3e-11
 Identities = 36/194 (18%), Positives = 74/194 (38%), Gaps = 7/194 (3%)

Query: 373 AEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLL-S 431
           A  A+  L   ++D          NK A  V  L+K      + +     + ++++ + +
Sbjct: 15  ATRAIPELTKLLND----EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN 70

Query: 432 SKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIA 491
           + D  T       L NLS H +    + +SGG+  +V M+          +A  TL  + 
Sbjct: 71  TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLL 129

Query: 492 SIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRF-LAAGAVPL 550
             +E  K+       +  +V ++     +        +  L   +       LA+G    
Sbjct: 130 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQA 189

Query: 551 LLNLLTSSDSEELI 564
           L+N++ +   E+L+
Sbjct: 190 LVNIMRTYTYEKLL 203

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 7e-05
 Identities = 36/173 (20%), Positives = 64/173 (36%), Gaps = 6/173 (3%)

Query: 371 LAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLL 430
           + +   +  +   + +       E     A  +  L+         + + G IP+L+K+L
Sbjct: 55  MRSPQMVSAIVRTMQN---TNDVETARCTAGTLHNLSHHRE-GLLAIFKSGGIPALVKML 110

Query: 431 SSKDSSTQENAIAALLNLSKH-CKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFY 489
            S   S    AI  L NL  H   +K  V  +GGL  +V ++ K   V+        L  
Sbjct: 111 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQI 169

Query: 490 IASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRF 542
           +A   +  KLI        ALV+++R  T          +  +L    ++   
Sbjct: 170 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPA 222

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 8e-04
 Identities = 21/126 (16%), Positives = 42/126 (33%), Gaps = 5/126 (3%)

Query: 543 LAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAIL-HHGALDMIMKILDSCT 601
           LA  A+P L  LL   D + ++  +  ++  L++K     AI+     +  I++ + +  
Sbjct: 14  LATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 72

Query: 602 SRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILH 661
                      L  L  +       L +     + +L  +L          A   +  L 
Sbjct: 73  DVETARCTAGTLHNLSHH---REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 129

Query: 662 EFYERH 667
              E  
Sbjct: 130 LHQEGA 135

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.1 bits (168), Expect = 2e-15
 Identities = 23/71 (32%), Positives = 36/71 (50%)

Query: 278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLK 337
           PD     IS E+M++P    +G TYDR  I +  +      P T   L  ++L+ NL +K
Sbjct: 5   PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMK 64

Query: 338 RIIQDWSVDNG 348
            +I  +  +NG
Sbjct: 65  EVIDAFISENG 75

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.3 bits (156), Expect = 2e-13
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 270 NNMLGGLTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWF--RAGNSTCPKTGERLQS 327
            N++  +      CPI LE++K+PV+    H + +  +LK    + G S CP     +  
Sbjct: 12  QNVINAM-QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70

Query: 328 KELLVNLVLKRIIQ 341
           + L  +    ++++
Sbjct: 71  RSLQESTRFSQLVE 84

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (145), Expect = 4e-12
 Identities = 12/54 (22%), Positives = 18/54 (33%)

Query: 279 DDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLV 332
               C I  E  KD      GH    + +  W  +    CP     ++  E +V
Sbjct: 22  TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 75

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (158), Expect = 7e-12
 Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 2/157 (1%)

Query: 423 IPSLLKLLSSKDSSTQENAIAALLNLSKHC-KSKSMVVESGGLDFIVDMVKKGLKVEARQ 481
           IP  ++ LSS+D   Q      + +       +K  V + GG+  +VD+++       +Q
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP-NQNVQQ 62

Query: 482 HAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWR 541
            AA  L  +       KL       I   V ++R   +   +  L  +   L  +     
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 542 FLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKL 578
            L A A+P+L + +    S     +S      +  ++
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 2e-11
 Identities = 37/282 (13%), Positives = 88/282 (31%), Gaps = 9/282 (3%)

Query: 388 LLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLN 447
           L     + +   AY ++         +  + ++G I  L+ LL S + + Q+ A  AL N
Sbjct: 11  LSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRN 70

Query: 448 LSKHC-KSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEA 506
           L      +K       G+   V ++++    E ++     L+ ++S +E ++ +    +A
Sbjct: 71  LVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA--DA 128

Query: 507 IPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITD 566
           +P L D V          +        M        +   A   L NL ++    + + +
Sbjct: 129 LPVLADRVII------PFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 567 SLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVA 626
              ++ +L   +   +A        +   +          +  V            N   
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 627 LLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYERHS 668
               +         +++        +     +     Y   +
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDA 284

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 4e-09
 Identities = 24/178 (13%), Positives = 62/178 (34%), Gaps = 17/178 (9%)

Query: 413 NRSCLVEVGCIPSLLKLLSSKDSSTQ-------ENAIAALLNLSKHCKSKSMVVESGGLD 465
               L     I + L L+                  + A   L     S+ + ++  GL 
Sbjct: 275 GSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLP 334

Query: 466 FIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKK-- 523
            I  +++ G   +  +  A+ L  ++      +++G   +  P +  ++   T  +    
Sbjct: 335 QIARLLQSG-NSDVVRSGASLLSNMSRHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSE 391

Query: 524 ----NALVAIFGLLMHSG-NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE 576
               +A   +  L+        ++ ++  +  ++NL  SS S +    +  +L+ +  
Sbjct: 392 DILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS 449

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 3e-06
 Identities = 20/149 (13%), Positives = 52/149 (34%), Gaps = 13/149 (8%)

Query: 359 NRDITRTVLAGSLAAEGAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLV 418
              ++  +       E  +  +A  +      G S+     A  +  +++  +     + 
Sbjct: 315 KGLMSSGMSQLIGLKEKGLPQIARLLQS----GNSDVVRSGASLLSNMSRHPL-LHRVMG 369

Query: 419 EVGCIPSLLKLLSSKDSS------TQENAIAALLNLSKHC-KSKSMVVESGGLDFIVDMV 471
                P + +LL+S   +         +A   + NL     +       S  L+ I+++ 
Sbjct: 370 N-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLC 428

Query: 472 KKGLKVEARQHAAATLFYIASIEEYRKLI 500
           +     +A + A   L  + S +E + ++
Sbjct: 429 RSSASPKAAEAARLLLSDMWSSKELQGVL 457

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 3e-11
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 278 PDDFTCPISLEIMKDPVTLSTG-HTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVL 336
            D+F  PI   +M DPV L +   T DR++I +   +   T P     L   ++  N  L
Sbjct: 20  CDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ-TDPFNRSPLTMDQIRPNTEL 78

Query: 337 KRIIQDWSVDNGVSIAEESG 356
           K  IQ W  +        SG
Sbjct: 79  KEKIQRWLAERKQQSGPSSG 98

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.8 bits (143), Expect = 5e-10
 Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 3/161 (1%)

Query: 421 GCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKS--MVVESGGLDFIVDMVKKGLKVE 478
             +  ++K ++S +  +Q  A  A   L    K      ++ +G +   V  + K     
Sbjct: 13  WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP 72

Query: 479 ARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLL-MHSG 537
            +  +A  L  IAS    +     +  AIPA + ++        + A+ A+  +    S 
Sbjct: 73  IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 132

Query: 538 NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKL 578
                +  GA+  LL LL   D   L    L  L      L
Sbjct: 133 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 173

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.6 bits (119), Expect = 4e-07
 Identities = 27/163 (16%), Positives = 52/163 (31%), Gaps = 7/163 (4%)

Query: 404 RLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSST-QENAIAALLNLSKHCKSKSMVVESG 462
           +LL++        ++  G IP  +  L   D S  Q  +  AL N++     ++  V  G
Sbjct: 39  KLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG 98

Query: 463 GLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSK 522
           G       +         + A   L  IA      + +     AI  L+ ++      + 
Sbjct: 99  GAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL 158

Query: 523 KNALVAIFGLLMH------SGNHWRFLAAGAVPLLLNLLTSSD 559
               +      +       +           +P L+ LL  +D
Sbjct: 159 ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 201

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 404 RLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS-------KS 456
              +  ++     LV  G I  L+ LLS+KD+   +  + A+ N+ +  +          
Sbjct: 340 NYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSI 399

Query: 457 MVVESGGLDFIVDM 470
           M+ E GGLD I  +
Sbjct: 400 MIEECGGLDKIEAL 413

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.5 bits (111), Expect = 4e-06
 Identities = 43/196 (21%), Positives = 82/196 (41%), Gaps = 8/196 (4%)

Query: 412 FNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMV 471
                +V+ G +P L+KLL + +      A+ A+ N+      ++  V   G   +   +
Sbjct: 221 ERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSL 280

Query: 472 KKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFG 531
               K   ++ A  T+  I +  + +     N   +P LV ++     +++K A  AI  
Sbjct: 281 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 340

Query: 532 LLMHSGNHWR--FLAAGAVPLLLNLLTSSDSE--ELITDSLAVLATLAEKLDGT----IA 583
                        +  G +  L+NLL++ D++  ++I D+++ +   AEKL  T    I 
Sbjct: 341 YTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIM 400

Query: 584 ILHHGALDMIMKILDS 599
           I   G LD I  +   
Sbjct: 401 IEECGGLDKIEALQRH 416

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.1 bits (110), Expect = 4e-06
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 3/98 (3%)

Query: 506 AIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWR--FLAAGAVPLLLNLLTSSDSEEL 563
           ++  +V  +      S+  A  A   LL           + AG +P  ++ L  +D   +
Sbjct: 14  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73

Query: 564 ITDSLAVLATLAEKLD-GTIAILHHGALDMIMKILDSC 600
             +S   L  +A      T A++  GA+   + +L S 
Sbjct: 74  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 111

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.1 bits (130), Expect = 6e-10
 Identities = 15/52 (28%), Positives = 21/52 (40%)

Query: 279 DDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKEL 330
              +C I   I+ DPV  S  H + R  IL+  +   S CP         +L
Sbjct: 22  KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 2e-09
 Identities = 32/257 (12%), Positives = 83/257 (32%), Gaps = 11/257 (4%)

Query: 374 EGAMKLLANFISD---RLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLL-KL 429
           +  +++L+  +        +   +++ + A E+      ++ N +   ++  +  L+ + 
Sbjct: 8   KSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRY 67

Query: 430 LSSKDSSTQENAIAALLNLS-KHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLF 488
           L +  +  +  A   +   S      +  V+  G L  ++ ++ +      R  A   + 
Sbjct: 68  LEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAIS 127

Query: 489 YIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAV 548
            +   +E   L     +    L+  ++    + K  +   +  LL+    H   L +  +
Sbjct: 128 CLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM 187

Query: 549 PLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEY 608
              L  L  ++        L  L +L       +       L +   +   C      E 
Sbjct: 188 VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEE 247

Query: 609 C------VSLLLALCIN 619
                     LL  C +
Sbjct: 248 YQEELEFCEKLLQTCFS 264

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 6e-08
 Identities = 31/226 (13%), Positives = 65/226 (28%), Gaps = 1/226 (0%)

Query: 424 PSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHA 483
           P+  +   + D   +E A+  L +L ++  + +   +  G+  +V    +      R  A
Sbjct: 20  PTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRA 79

Query: 484 AATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRS-KKNALVAIFGLLMHSGNHWRF 542
           A  +   +      +       A+  L+ ++      + +  AL AI  L+         
Sbjct: 80  AQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ 139

Query: 543 LAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTS 602
                   +L        ++L   S  +L  L          L    +   +  L     
Sbjct: 140 FLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEH 199

Query: 603 RAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSR 648
               E+ +  L +L  +    V         L   L          
Sbjct: 200 SPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQH 245

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.9 bits (133), Expect = 1e-08
 Identities = 29/217 (13%), Positives = 71/217 (32%), Gaps = 1/217 (0%)

Query: 404 RLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSST-QENAIAALLNLSKHCKSKSMVVESG 462
           ++L++        +++ G +P L++ +        Q  A  AL N++    +++ VV   
Sbjct: 102 QILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA 161

Query: 463 GLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSK 522
               +   +     VE ++ A   L  +A      +       A+  ++ +         
Sbjct: 162 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLI 221

Query: 523 KNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTI 582
           + A   +  L         +         L  L  S   E + D+   ++ L++     I
Sbjct: 222 RTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAI 281

Query: 583 AILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCIN 619
             +    +   +  L S  S   +   +  +  +   
Sbjct: 282 QAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 318

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.3 bits (121), Expect = 3e-07
 Identities = 29/155 (18%), Positives = 69/155 (44%), Gaps = 2/155 (1%)

Query: 423 IPSLLKLLSSKDSSTQENAIAALLNL--SKHCKSKSMVVESGGLDFIVDMVKKGLKVEAR 480
           +P + + L+S D   Q +A      +   +H     +V+++G +  +V+ +++      +
Sbjct: 78  LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 137

Query: 481 QHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHW 540
             AA  L  IAS    +  +  + +A+P  + ++  G+   K+ A+ A+  +   S ++ 
Sbjct: 138 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 197

Query: 541 RFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLA 575
            ++        +  L +S+   LI  +   L+ L 
Sbjct: 198 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 232

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 12/66 (18%)

Query: 417 LVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS------------KSMVVESGGL 464
           LV  GCI  L  LL   D+   E  + AL N+ K  ++               + ++GG+
Sbjct: 413 LVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGM 472

Query: 465 DFIVDM 470
           + I + 
Sbjct: 473 EKIFNC 478

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 2e-06
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 4/64 (6%)

Query: 279 DDFTCPISLEIMKDPVTLST-GHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLK 337
               C     I+++PV L    H +    +      G   C         ++L +N  L 
Sbjct: 21  KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVC---YTPAWIQDLKINRQLD 77

Query: 338 RIIQ 341
            +IQ
Sbjct: 78  SMIQ 81

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (100), Expect = 3e-06
 Identities = 9/56 (16%), Positives = 10/56 (17%), Gaps = 4/56 (7%)

Query: 279 DDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNL 334
               C       K P  L   HT     +          CP              L
Sbjct: 5   QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGADTPAL 56

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (96), Expect = 8e-06
 Identities = 10/51 (19%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 282 TCPISLEIMKDPVTLS-TGHTYDRASILKWFRAGNSTCPKTGERLQSKELL 331
            C IS ++ + PV    +   ++++ + ++ +      P T E L  +E++
Sbjct: 2   LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVK-DTGNDPITNEPLSIEEIV 51

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 39.2 bits (91), Expect = 7e-05
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%)

Query: 283 CPISLEIMKDPVT-LSTGHTYDRASILKWFRAGNSTCP 319
           CPI LE   +    L   H +    I +W R  N TCP
Sbjct: 8   CPICLEDPSNYSMALPCLHAFCYVCITRWIR-QNPTCP 44

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 38.3 bits (89), Expect = 9e-05
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 5/45 (11%)

Query: 279 DDFTCPISLEIMKDPVTLST----GHTYDRASILKWFRAGNSTCP 319
           D   C + L  ++D          GH +    +  W  + +STCP
Sbjct: 4   DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCP 47

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 2e-04
 Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 4/42 (9%)

Query: 283 CPISLEIMKD----PVTLSTGHTYDRASILKWFRAGNSTCPK 320
           CP+ +E ++         + G+   R    +     N  CP 
Sbjct: 3   CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPA 44

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 3e-04
 Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 5/57 (8%)

Query: 279 DDFTCPISLEIMKDP-----VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKEL 330
           DD  CP              +    GHT   + +   F  G   CP+ G  L+    
Sbjct: 2   DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	685
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.88
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.88
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.87
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.85
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.8
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.8
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.76
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.72
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.71
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.45
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.44
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.4
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.36
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.24
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.06
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.04
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	98.96
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.84
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.83
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.55
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.55
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.52
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.4
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.33
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.32
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.28
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.16
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.85
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.8
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	97.79
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.67
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.6
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	97.59
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.58
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	97.55
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.55
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.52
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.34
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.31
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.17
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	96.83
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	96.7
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.59
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.46
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	95.88
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	95.15
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	94.95
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	93.98
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	91.45
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	91.09
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	83.99
d1weoa_	93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	82.28

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7.1e-23  Score=227.95  Aligned_cols=276  Identities=18%  Similarity=0.179  Sum_probs=243.1

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHh-hCCHHHHHHhhcC-CCHHHHHHHHHHhhccccCcchh
Q 039015          378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVE-VGCIPSLLKLLSS-KDSSTQENAIAALLNLSKHCKSK  455 (685)
Q Consensus       378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~-~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~k  455 (685)
                      ...|+.|++.|.+.+..++..|+..|..++. +...|..++. .|++|.|+.+|.. .+.++++.|+.+|.+|+.+++++
T Consensus        16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~-~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~   94 (529)
T d1jdha_          16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL   94 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT-SHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence            3568999999999999999999999999997 4556666655 4789999999965 67899999999999999999999


Q ss_pred             HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh-HHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015          456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE-YRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM  534 (685)
Q Consensus       456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  534 (685)
                      ..|++.|+++.|+.+|+++ +.+++.+|+++|.+|+.+.+ .+..+.. .|+|+.|+.+|+++++..+..++.+|.+|+.
T Consensus        95 ~~i~~~g~i~~Li~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~  172 (529)
T d1jdha_          95 LAIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNVKFLAITTDCLQILAY  172 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHH-HTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHhCCC-CHHHHHHHHHHHHHhhcccchhhhHHHh-cCCchHHHHHHHccChHHHHHHHHHHHHHhh
Confidence            9999999999999999998 99999999999999988764 5666666 9999999999999999999999999999997


Q ss_pred             CC-CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHH
Q 039015          535 HS-GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLL  613 (685)
Q Consensus       535 ~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L  613 (685)
                      .. +++..+.+.|+++.|+.+|.......+...+..++.+++.+++++..+.+.|+++.|+.++.++ ++..+.+++++|
T Consensus       173 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~~~~a~~~l  251 (529)
T d1jdha_         173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTL  251 (529)
T ss_dssp             TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS-CHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhccc-chhhhhhhhhHH
Confidence            54 4778888999999999999766778899999999999999999999999999999999999988 999999999999


Q ss_pred             HHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 039015          614 LALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHE  662 (685)
Q Consensus       614 ~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~  662 (685)
                      .+++......    .. ..|+++.|+.++.+++...+..|..+|..+..
T Consensus       252 ~~ls~~~~~~----~~-~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~  295 (529)
T d1jdha_         252 RNLSDAATKQ----EG-MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC  295 (529)
T ss_dssp             HHHHTTCTTC----SC-CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             Hhccccccch----hh-hhhcchhhhhhcccccHHHHHHHHHHHHhhcc
Confidence            9998654221    11 14679999999999999999999998888753

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=5.4e-21  Score=206.06  Aligned_cols=280  Identities=16%  Similarity=0.239  Sum_probs=237.7

Q ss_pred             HHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc-chhH
Q 039015          379 LLANFISDRLLE-GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-KSKS  456 (685)
Q Consensus       379 ~~i~~Lv~~L~s-~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~k~  456 (685)
                      +.++.|++.|++ .+++.|..|+++|.+++..+++++..+.+.|++|.|+.+|.+++.++++.|+++|.|++.+. ..+.
T Consensus        56 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~  135 (434)
T d1q1sc_          56 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD  135 (434)
T ss_dssp             TCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHH
Confidence            468999999964 46788999999999999878888999999999999999999999999999999999999765 4466


Q ss_pred             HHHhcCcHHHHHHHhc-----------------------------------------------CCCCHHHHHHHHHHHHH
Q 039015          457 MVVESGGLDFIVDMVK-----------------------------------------------KGLKVEARQHAAATLFY  489 (685)
Q Consensus       457 ~i~~~g~i~~Lv~lL~-----------------------------------------------~~~~~e~~~~Aa~~L~~  489 (685)
                      .+.+.|+++.++.++.                                               .+ +.+++..|+++|.+
T Consensus       136 ~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~~~~~a~~~l~~  214 (434)
T d1q1sc_         136 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAISY  214 (434)
T ss_dssp             HHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhcc-ccchhhhHHhhhcc
Confidence            6667777776666543                                               33 67888899999999


Q ss_pred             hcCchh-HHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-cHHHHHhcCChHHHHHHhccCCChhHHHHH
Q 039015          490 IASIEE-YRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG-NHWRFLAAGAVPLLLNLLTSSDSEELITDS  567 (685)
Q Consensus       490 Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~a  567 (685)
                      |+..+. ....+.. .|+++.|+.++.+++...+..|+.+|.+++.+.+ .+..+++.|+++.|+.+| +++++.++..|
T Consensus       215 l~~~~~~~~~~~~~-~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~~~~~v~~~a  292 (434)
T d1q1sc_         215 LTDGPNERIEMVVK-KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEA  292 (434)
T ss_dssp             HTSSCHHHHHHHHT-TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT-TCSSHHHHHHH
T ss_pred             cchhhhhhHHHHhh-cccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhh-cccchhhhHHH
Confidence            987764 4444555 8999999999999999999999999999997654 677889999999999999 67788999999


Q ss_pred             HHHHHHHhcC-hhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCC
Q 039015          568 LAVLATLAEK-LDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGS  646 (685)
Q Consensus       568 l~~L~~La~~-~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~  646 (685)
                      +.+|.+|+.+ ++....+.+.|+++.++.++.++ ++.++..|+++|.+++...+.+....+.+ .|+++.|+.++.+++
T Consensus       293 ~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~l~~-~~~i~~L~~ll~~~d  370 (434)
T d1q1sc_         293 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVH-CGIIEPLMNLLSAKD  370 (434)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHH-TTCHHHHHHHTTSSC
T ss_pred             HHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc-ChHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCcHHHHHHHhcCCC
Confidence            9999999874 55677788999999999999988 99999999999999998776666666766 899999999999999


Q ss_pred             hHHHHHHHHHHHHHHHh
Q 039015          647 SRASKKASALIRILHEF  663 (685)
Q Consensus       647 ~~~k~~A~~lL~~l~~~  663 (685)
                      +.....+...+..+-++
T Consensus       371 ~~~~~~~l~~l~~ll~~  387 (434)
T d1q1sc_         371 TKIIQVILDAISNIFQA  387 (434)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99888877766655443

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=4e-21  Score=207.05  Aligned_cols=280  Identities=18%  Similarity=0.201  Sum_probs=234.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCc-hhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccCc-chh
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIF-NRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLSKHC-KSK  455 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~-~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~-~~k  455 (685)
                      .+|+.+++.|.+++++.+..|+.+|+++...+.. ....+.+.|++|.|+++|.+ +++.+|..|+++|.|++.+. +.+
T Consensus        13 ~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~   92 (434)
T d1q1sc_          13 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT   92 (434)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh
Confidence            4589999999999999999999999988653332 24678999999999999975 56789999999999998765 568


Q ss_pred             HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhc--------------------------------
Q 039015          456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGE--------------------------------  502 (685)
Q Consensus       456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~--------------------------------  502 (685)
                      ..+++.|+++.++.+|.++ +.+.++.|+++|.+|+.++ +++..+..                                
T Consensus        93 ~~i~~~~~i~~l~~~L~~~-~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~  171 (434)
T d1q1sc_          93 KAVVDGGAIPAFISLLASP-HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS  171 (434)
T ss_dssp             HHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred             hHhhhccchhhhhhccccC-CHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHH
Confidence            8888999999999999998 9999999999999998754 44544433                                


Q ss_pred             --------------CCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-cHHHHHhcCChHHHHHHhccCCChhHHHHH
Q 039015          503 --------------NPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG-NHWRFLAAGAVPLLLNLLTSSDSEELITDS  567 (685)
Q Consensus       503 --------------~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~a  567 (685)
                                    ..++++.|+.++.+++++.+.+|+++|.+|+.+.. ....+...|+++.|+.++ .+++..++..+
T Consensus       172 ~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll-~~~~~~~~~~a  250 (434)
T d1q1sc_         172 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPA  250 (434)
T ss_dssp             HHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHHHH
T ss_pred             HHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhccccc-ccchhhhhhch
Confidence                          12245666677777778888899999999987765 555667899999999999 56788999999


Q ss_pred             HHHHHHHhcC-hhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCC
Q 039015          568 LAVLATLAEK-LDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGS  646 (685)
Q Consensus       568 l~~L~~La~~-~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~  646 (685)
                      +.+|.+++.+ +..+..+.+.|+++.++.++++. ++.+++.|+.+|.+++..+ ......+.. .|+++.++.++.+++
T Consensus       251 l~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~-~~~~~~i~~-~~~i~~li~~l~~~~  327 (434)
T d1q1sc_         251 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGR-QDQIQQVVN-HGLVPFLVGVLSKAD  327 (434)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTTSC-HHHHHHHHH-TTCHHHHHHHHHSSC
T ss_pred             hhhhhhHHhhhhHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhcccc-chhHHHHhh-hhhHHHHHHHHhccC
Confidence            9999999874 56677888999999999999987 9999999999999999875 444555555 789999999999999


Q ss_pred             hHHHHHHHHHHHHHHHh
Q 039015          647 SRASKKASALIRILHEF  663 (685)
Q Consensus       647 ~~~k~~A~~lL~~l~~~  663 (685)
                      ...+..|.+++..+...
T Consensus       328 ~~v~~~a~~~l~nl~~~  344 (434)
T d1q1sc_         328 FKTQKEAAWAITNYTSG  344 (434)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhc
Confidence            99999999988887654

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3e-21  Score=214.68  Aligned_cols=274  Identities=21%  Similarity=0.186  Sum_probs=235.0

Q ss_pred             HHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcch-hH
Q 039015          379 LLANFISDRLLE-GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS-KS  456 (685)
Q Consensus       379 ~~i~~Lv~~L~s-~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~  456 (685)
                      +.++.|+..|.+ ++.+.+..|+..|..++. +++++..+++.|++|.|+.+|++++++++..|+++|.||+.+.++ +.
T Consensus        59 ~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~  137 (529)
T d1jdha_          59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM  137 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHH
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhh
Confidence            468899999854 678899999999999996 788999999999999999999999999999999999999987765 67


Q ss_pred             HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccCC-HHHHHHHHHHHHHhcC
Q 039015          457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDGT-DRSKKNALVAIFGLLM  534 (685)
Q Consensus       457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~A~~aL~nLs~  534 (685)
                      .+.+.|+++.|+.+|+++ +.+.+..++.+|.+|+..+ +++..+.. .|+++.|+.++..++ ...+..++.+|.|++.
T Consensus       138 ~~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~  215 (529)
T d1jdha_         138 AVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHhcCCchHHHHHHHcc-ChHHHHHHHHHHHHHhhhhhHHHHHHHh-cccchHHHHHHHhhhhHHHHHHHHHHHhhhhc
Confidence            777999999999999999 9999999999999999755 66677777 999999999997655 6788899999999999


Q ss_pred             CCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHH
Q 039015          535 HSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLL  614 (685)
Q Consensus       535 ~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~  614 (685)
                      +++++..+++.|+++.|+.++ .+++..+...++++|.+++......  +...|+++.|+++++++ ++..++.|+.+|+
T Consensus       216 ~~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~l~~ls~~~~~~--~~~~~~i~~Lv~ll~~~-~~~~~~~a~~~L~  291 (529)
T d1jdha_         216 CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSD-DINVVTCAAGILS  291 (529)
T ss_dssp             STTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhhhhHHHHh-cccchhhhhhhhhHHHhccccccch--hhhhhcchhhhhhcccc-cHHHHHHHHHHHH
Confidence            999999999999999999999 6677889999999999998654332  22345689999999988 9999999999999


Q ss_pred             HHhccCcHHHHHHHHhcCCcHHHHHHHHhc--CChHHHHHHHHHHHHHH
Q 039015          615 ALCINGGANVVALLVKSPSLMGSLYSLLSQ--GSSRASKKASALIRILH  661 (685)
Q Consensus       615 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~--g~~~~k~~A~~lL~~l~  661 (685)
                      +|+.++.. ....+.+ .|+++.|+.++..  ..+..++.|...|+.+.
T Consensus       292 ~l~~~~~~-~~~~i~~-~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~  338 (529)
T d1jdha_         292 NLTCNNYK-NKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLT  338 (529)
T ss_dssp             HHTTTCHH-HHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             hhccchhH-HHHHHHH-hhhHHHHHHHHHhhhcchhHHHHHHHHhhccc
Confidence            99987644 3444445 7889999888753  45677888888888775

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5e-21  Score=204.34  Aligned_cols=282  Identities=17%  Similarity=0.172  Sum_probs=225.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhcccc-CcchhHHH
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSK-HCKSKSMV  458 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~-~~~~k~~i  458 (685)
                      +|+.|++.|++++++.|..|++.|.++|.+++++|..+.+.|+||.|+++|++++++++..|+.+|.||+. +++++..+
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i   82 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            48999999999999999999999999998899999999999999999999999999999999999999995 45779999


Q ss_pred             HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh-------------------------------------------
Q 039015          459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE-------------------------------------------  495 (685)
Q Consensus       459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-------------------------------------------  495 (685)
                      .+.|+++.++.++.+..+.+++..|+++|.+|+..+.                                           
T Consensus        83 ~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  162 (457)
T d1xm9a1          83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN  162 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred             HHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHH
Confidence            9999999999999866578888888888888765432                                           


Q ss_pred             -------------HHHHhhcCCCcHHHHHHHhc-----------------------------------------------
Q 039015          496 -------------YRKLIGENPEAIPALVDMVR-----------------------------------------------  515 (685)
Q Consensus       496 -------------~~~~i~~~~g~i~~Lv~lL~-----------------------------------------------  515 (685)
                                   ++..+....|+++.|+.+++                                               
T Consensus       163 a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (457)
T d1xm9a1         163 ATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT  242 (457)
T ss_dssp             HHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----
T ss_pred             HHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhh
Confidence                         11212222455565555442                                               


Q ss_pred             ---------------------------------------------------c-CCHHHHHHHHHHHHHhcCCCC------
Q 039015          516 ---------------------------------------------------D-GTDRSKKNALVAIFGLLMHSG------  537 (685)
Q Consensus       516 ---------------------------------------------------~-~~~~~~~~A~~aL~nLs~~~~------  537 (685)
                                                                         . .++..+..+..++.+++....      
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  322 (457)
T d1xm9a1         243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGM  322 (457)
T ss_dssp             -----------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHH
T ss_pred             HHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHH
Confidence                                                               1 123444566677778776544      


Q ss_pred             cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcC-----CChhHHHHHHHH
Q 039015          538 NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSC-----TSRAGKEYCVSL  612 (685)
Q Consensus       538 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~-----~s~~~~e~a~~~  612 (685)
                      .+..+.+.|+++.|+++| .++++.++..++.+|.+|+.+++++..+.+ ++++.++.+|...     .++.++..|+.+
T Consensus       323 ~~~~~~~~~~l~~L~~~l-~~~~~~v~~~a~~~l~~La~~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~~a~~~  400 (457)
T d1xm9a1         323 SQLIGLKEKGLPQIARLL-QSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYT  400 (457)
T ss_dssp             HHHHHTTSCCHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHhhh-cCccHHHHHHHHHHHHHHhhChhHHHHHHH-hhHHHHHHHHhccccCcCCcHHHHHHHHHH
Confidence            244456789999999999 677889999999999999999999888865 6899999977642     145688899999


Q ss_pred             HHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcC-ChHHHHHHHHHHHHHHHhhc
Q 039015          613 LLALCINGGANVVALLVKSPSLMGSLYSLLSQG-SSRASKKASALIRILHEFYE  665 (685)
Q Consensus       613 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g-~~~~k~~A~~lL~~l~~~~~  665 (685)
                      |.+|+.++++. ++.+.+ .|+++.|+.++.+. ++..++.|..+|..|..+.+
T Consensus       401 L~~l~~~~~~~-~~~l~~-~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~  452 (457)
T d1xm9a1         401 VRNLMASQPQL-AKQYFS-SSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHTTCTHH-HHHHCC-HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHHhcCCHHH-HHHHHH-CCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHh
Confidence            99999876544 555555 78999999999875 67899999999999855443

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=1.3e-20  Score=208.09  Aligned_cols=280  Identities=16%  Similarity=0.160  Sum_probs=242.3

Q ss_pred             HHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc-chhH
Q 039015          379 LLANFISDRLLE-GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-KSKS  456 (685)
Q Consensus       379 ~~i~~Lv~~L~s-~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~k~  456 (685)
                      +.++.|+..|++ .+.+.+..|++.|.+++..+......+.+.|++|.++.+|.+++.++++.|+++|.||+.+. ..|.
T Consensus       119 g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~  198 (503)
T d1wa5b_         119 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD  198 (503)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHH
Confidence            468999999975 46789999999999999877778888999999999999999999999999999999998765 6799


Q ss_pred             HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 039015          457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS  536 (685)
Q Consensus       457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~  536 (685)
                      .+.+.|+++.++.++... +.+.+.+++++|.+|+.............++++.|+.++.+++++...+++++|.+|+.+.
T Consensus       199 ~l~~~~~~~~L~~ll~~~-~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~  277 (503)
T d1wa5b_         199 YVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP  277 (503)
T ss_dssp             HHHHTTCHHHHHHGGGSC-CHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred             HHHhhcccccchhhcccC-CHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCC
Confidence            999999999999999998 8999999999999999766433322222679999999999999999999999999999766


Q ss_pred             C-cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChh-cHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHH
Q 039015          537 G-NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLD-GTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLL  614 (685)
Q Consensus       537 ~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~-~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~  614 (685)
                      . ....+++.|+++.|+.++ .+++..+...|+.+|.+++.+.. ....+.+.|+++.+..+++++ ++.++..++++|.
T Consensus       278 ~~~~~~~~~~~~~~~l~~ll-~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~  355 (503)
T d1wa5b_         278 QEAIQAVIDVRIPKRLVELL-SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTIS  355 (503)
T ss_dssp             HHHHHHHHHTTCHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhhhhhcc-cCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence            5 457789999999999999 56778999999999999987644 445667888899999999987 9999999999999


Q ss_pred             HHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015          615 ALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF  663 (685)
Q Consensus       615 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~  663 (685)
                      +++.+++. ....+.. .|+++.++.++.+++..++..|.+.|..+...
T Consensus       356 nl~~~~~~-~~~~i~~-~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~  402 (503)
T d1wa5b_         356 NITAGNTE-QIQAVID-ANLIPPLVKLLEVAEYKTKKEACWAISNASSG  402 (503)
T ss_dssp             HHTTSCHH-HHHHHHH-TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHhhccHH-HHHHHHH-ccccchhHHhcccCChhHHHHHHHHHHHHHhc
Confidence            99987644 4455555 89999999999999999999999988887654

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=1.9e-19  Score=198.67  Aligned_cols=277  Identities=17%  Similarity=0.203  Sum_probs=240.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcch-hHH
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS-KSM  457 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~~  457 (685)
                      +.++.++..|.+++.+.+..|++.|.+++..++.+|..+.+.|+++.|+.++.+.+..++..++++|.||+.+... ...
T Consensus       162 g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~  241 (503)
T d1wa5b_         162 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDW  241 (503)
T ss_dssp             TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCH
T ss_pred             CChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHH
Confidence            4688999999999999999999999999988889999999999999999999999999999999999999987654 444


Q ss_pred             HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 039015          458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS  536 (685)
Q Consensus       458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~  536 (685)
                      ....|+++.++.++.++ +.+.+..++++|.+|+..+ +....+.. .|+++.|+.++.+++...+..|+.+|.|++.+.
T Consensus       242 ~~~~~~l~~l~~~l~~~-d~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~  319 (503)
T d1wa5b_         242 SVVSQALPTLAKLIYSM-DTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHESTLVQTPALRAVGNIVTGN  319 (503)
T ss_dssp             HHHGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHhccc-cHHHHHHHHHHHHhhccCCchhhhhhhh-hhhhhhhhhcccCCchhhhhhHHHHHHHHHHHH
Confidence            45688999999999998 9999999999999998765 45566777 899999999999999999999999999999876


Q ss_pred             C-cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHH
Q 039015          537 G-NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE-KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLL  614 (685)
Q Consensus       537 ~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~  614 (685)
                      + ....+++.|+++.|..++ .++++.++..++++|.|++. ++.....+.+.|+++.++.++..+ +..++..|+++|.
T Consensus       320 ~~~~~~~~~~~~l~~l~~ll-~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~  397 (503)
T d1wa5b_         320 DLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAIS  397 (503)
T ss_dssp             HHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred             HHHHHhhhccchHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHH
Confidence            5 455677899999999999 66788999999999999976 566777888999999999999988 9999999999999


Q ss_pred             HHhccCc--HHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 039015          615 ALCINGG--ANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRIL  660 (685)
Q Consensus       615 ~L~~~~~--~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l  660 (685)
                      +++.++.  ......+.. .|+++.|..++...+......+...|..+
T Consensus       398 nl~~~~~~~~~~~~~l~~-~~~l~~l~~~L~~~d~~~~~~~L~~l~~l  444 (503)
T d1wa5b_         398 NASSGGLQRPDIIRYLVS-QGCIKPLCDLLEIADNRIIEVTLDALENI  444 (503)
T ss_dssp             HHHHHTTTCTHHHHHHHH-TTCHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHhcccccHHHHHHHHH-CCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            9997543  234455665 89999999999999888777665554444

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.80  E-value=1.3e-20  Score=153.75  Aligned_cols=74  Identities=54%  Similarity=0.939  Sum_probs=71.1

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcCc
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGV  349 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~  349 (685)
                      ++|++|.||||+++|.|||+++|||+||+.||++|+..+..+||.|+.++...++.||..|+++|++|+++||+
T Consensus         4 eiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~~~   77 (78)
T d1t1ha_           4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI   77 (78)
T ss_dssp             CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred             CCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHHHHHhCc
Confidence            68999999999999999999999999999999999998778899999999999999999999999999999986

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=2e-20  Score=153.39  Aligned_cols=75  Identities=31%  Similarity=0.483  Sum_probs=71.5

Q ss_pred             CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcCcc
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVS  350 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~~  350 (685)
                      ++|++|.||||+++|.|||+++|||+||+.||.+|+..++.+||.|+.++...++.||..|+++|++|+++|++.
T Consensus         3 eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~~~~~~   77 (80)
T d2c2la2           3 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV   77 (80)
T ss_dssp             CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred             CCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHHHHCCCc
Confidence            689999999999999999999999999999999999987889999999999889999999999999999999864

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.1e-17  Score=169.07  Aligned_cols=195  Identities=13%  Similarity=0.143  Sum_probs=170.9

Q ss_pred             CCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHH-hhcCCCHHHHHHHHHHhhccccCc-chhHHHHhcCcHHHHH
Q 039015          391 GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLK-LLSSKDSSTQENAIAALLNLSKHC-KSKSMVVESGGLDFIV  468 (685)
Q Consensus       391 ~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~-lL~s~~~~~~~~A~~aL~nLs~~~-~~k~~i~~~g~i~~Lv  468 (685)
                      .+.+.+..|+..|..|+. +.+++..+...|+++.|+. +|.+++++++..|+.+|.+++.++ ..+..+.+.|+++.|+
T Consensus        29 ~~~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv  107 (264)
T d1xqra1          29 ADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL  107 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            456788999999999996 7789999999999999985 788899999999999999999866 5688888999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC-CCCcHHHHHhcC
Q 039015          469 DMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM-HSGNHWRFLAAG  546 (685)
Q Consensus       469 ~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~~G  546 (685)
                      .+|.++.+++++..|+++|.+|+.+. .++..+.. .|+++.|++++++++...+..++.+|.||+. +++++..++++|
T Consensus       108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~-~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  186 (264)
T d1xqra1         108 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLR-LDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG  186 (264)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHH-hhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhh
Confidence            99986558899999999999999655 66777777 9999999999999999999999999999985 567999999999


Q ss_pred             ChHHHHHHhccCCChhHHHHHHHHHHHHhcC-hhcHHHHHhcC
Q 039015          547 AVPLLLNLLTSSDSEELITDSLAVLATLAEK-LDGTIAILHHG  588 (685)
Q Consensus       547 ~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~-~~~~~~i~~~g  588 (685)
                      +++.|+.+| .+++..+++.|+.+|.+|+.. +.....+...+
T Consensus       187 ~v~~L~~lL-~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~  228 (264)
T d1xqra1         187 MVQQLVALV-RTEHSPFHEHVLGALCSLVTDFPQGVRECREPE  228 (264)
T ss_dssp             HHHHHHHHH-TSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGG
T ss_pred             hHHHHHHHH-cCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence            999999999 667889999999999999885 45555554433

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.7e-16  Score=160.23  Aligned_cols=206  Identities=16%  Similarity=0.175  Sum_probs=175.3

Q ss_pred             CCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHH-HhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHH
Q 039015          432 SKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVD-MVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPA  509 (685)
Q Consensus       432 s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~-lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~  509 (685)
                      +.+.+.+..|+.+|.+|+.+.+|+..+...|++++++. ++.++ +.+++..|+.+|.+++.++ .++..+.. .|++|.
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~-~~~vr~~A~~~L~~l~~~~~~~~~~~~~-~~~i~~  105 (264)
T d1xqra1          28 AADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAAIQEQVLG-LGALRK  105 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHH
Confidence            34678899999999999999899999999999999986 56677 9999999999999999854 67778888 999999


Q ss_pred             HHHHhcc-CCHHHHHHHHHHHHHhcCCCC-cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-ChhcHHHHHh
Q 039015          510 LVDMVRD-GTDRSKKNALVAIFGLLMHSG-NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE-KLDGTIAILH  586 (685)
Q Consensus       510 Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~  586 (685)
                      |+.++.+ .++..+..|+.+|.+|+.+.. ++..++..|+++.|+++| .+++..++..++.+|.+++. +++.+..+.+
T Consensus       106 Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  184 (264)
T d1xqra1         106 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM-QQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS  184 (264)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHH-hcCchHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            9999965 568899999999999997654 777889999999999999 56788999999999999875 6889999999


Q ss_pred             cCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHH
Q 039015          587 HGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSL  641 (685)
Q Consensus       587 ~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~L  641 (685)
                      .|+++.|+.+++++ ++.+++.|+.+|.+|+..++.........+.+....|..+
T Consensus       185 ~~~v~~L~~lL~~~-~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~l~~~~~L~~~  238 (264)
T d1xqra1         185 MGMVQQLVALVRTE-HSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHR  238 (264)
T ss_dssp             TTHHHHHHHHHTSC-CSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHH
T ss_pred             hhhHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHH
Confidence            99999999999988 9999999999999999887666555443333444444443

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.9e-18  Score=143.94  Aligned_cols=74  Identities=30%  Similarity=0.399  Sum_probs=68.8

Q ss_pred             CCCCCccCcCccccCCCceeccCc-ccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcCcc
Q 039015          276 LTPDDFTCPISLEIMKDPVTLSTG-HTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVS  350 (685)
Q Consensus       276 ~~~~~~~CpIc~~~m~dPv~~~cg-htfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~~  350 (685)
                      ++|++|.||||+++|.|||+++|| |+||+.||.+|+.. +.+||.|++++...+++||..|++.|++|++++...
T Consensus        18 ~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~-~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~~~~   92 (98)
T d1wgma_          18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ   92 (98)
T ss_dssp             SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred             CCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHh-cCCcccccccccchhhcchHHHHHHHHHHHHHHHHh
Confidence            789999999999999999999866 59999999999987 678999999999999999999999999999998753

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=5.8e-15  Score=156.50  Aligned_cols=242  Identities=18%  Similarity=0.204  Sum_probs=189.7

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHhhcccc-CcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-chhHHH
Q 039015          421 GCIPSLLKLLSSKDSSTQENAIAALLNLSK-HCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIAS-IEEYRK  498 (685)
Q Consensus       421 G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~-~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~~  498 (685)
                      +.||.|+++|++++++++..|+++|.||+. ++++|..|.+.|+|+.|+++|+++ +++++..|+++|.+|+. +++++.
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP-NQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHH
Confidence            479999999999999999999999999996 567899999999999999999998 99999999999999995 568899


Q ss_pred             HhhcCCCcHHHHHHHhcc-CCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhc--------------cCCChhH
Q 039015          499 LIGENPEAIPALVDMVRD-GTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLT--------------SSDSEEL  563 (685)
Q Consensus       499 ~i~~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~--------------~~~~~~~  563 (685)
                      .+.+ .|+++.|+.++.+ .++..+..|+++|.+|+....++......|+.+.+..++.              ...+..+
T Consensus        81 ~i~~-~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          81 ETRR-QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHH-TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHH-CCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence            9998 8999999998865 5678899999999999999888887777655444433321              2345678


Q ss_pred             HHHHHHHHHHHhcChhcHHHHHhcCC-hHHHHHHhh--------------------------------------------
Q 039015          564 ITDSLAVLATLAEKLDGTIAILHHGA-LDMIMKILD--------------------------------------------  598 (685)
Q Consensus       564 ~~~al~~L~~La~~~~~~~~i~~~g~-v~~Lv~lL~--------------------------------------------  598 (685)
                      ...++.+|.+++.+++++..+...++ ++.++.+++                                            
T Consensus       160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  239 (457)
T d1xm9a1         160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence            88899999988887777666544433 555544332                                            


Q ss_pred             ------------------------------------------------------cCCChhHHHHHHHHHHHHhccCcH--
Q 039015          599 ------------------------------------------------------SCTSRAGKEYCVSLLLALCINGGA--  622 (685)
Q Consensus       599 ------------------------------------------------------~~~s~~~~e~a~~~L~~L~~~~~~--  622 (685)
                                                                            ...++..++.+..++..++.....  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~  319 (457)
T d1xm9a1         240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccch
Confidence                                                                  111345556677777777765421  


Q ss_pred             -HHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 039015          623 -NVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFY  664 (685)
Q Consensus       623 -~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~  664 (685)
                       ...+......|+++.|+.++.++++.++..|...+..|....
T Consensus       320 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~  362 (457)
T d1xm9a1         320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP  362 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred             HHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhCh
Confidence             122333334789999999999999999999999999987653

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=2e-14  Score=117.56  Aligned_cols=63  Identities=25%  Similarity=0.385  Sum_probs=53.9

Q ss_pred             CCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCc-ccHHHHhhH
Q 039015          278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELL-VNLVLKRII  340 (685)
Q Consensus       278 ~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~-~n~~l~~~i  340 (685)
                      .+++.||||.+.|.+||+++|||+||+.||.+|++.++.+||.|+.++...++. |...+.+.+
T Consensus        21 ~~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~l   84 (86)
T d1rmda2          21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNIL   84 (86)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHH
T ss_pred             ccCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHHHHHHHHh
Confidence            345799999999999999999999999999999987778999999999877654 566665554

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.4e-14  Score=124.05  Aligned_cols=68  Identities=22%  Similarity=0.490  Sum_probs=59.5

Q ss_pred             CCCccCcCccccCCCceeccCcccccHHHHHHHHHcC--CCCCCCCCccccCCCCcccHHHHhhHHHHHH
Q 039015          278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAG--NSTCPKTGERLQSKELLVNLVLKRIIQDWSV  345 (685)
Q Consensus       278 ~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~--~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~  345 (685)
                      .+.+.||||+++|.+|++++|||+||+.||.+|+...  ...||.|+..+...++.+|..+.++++.+.+
T Consensus        19 ~~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~~   88 (103)
T d1jm7a_          19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK   88 (103)
T ss_dssp             HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred             ccCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHHH
Confidence            3458999999999999999999999999999999753  3589999999998899999888888877643

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=4.3e-14  Score=106.35  Aligned_cols=52  Identities=19%  Similarity=0.383  Sum_probs=47.3

Q ss_pred             ccCcCccccCCCceec-cCcccccHHHHHHHHHcCCCCCCCCCccccCCCCccc
Q 039015          281 FTCPISLEIMKDPVTL-STGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVN  333 (685)
Q Consensus       281 ~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n  333 (685)
                      +.||||+++|.|||++ .|||+||+.||.+|+.. +.+||.|++++...+++|.
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~-~~~CP~c~~~l~~~dLipi   53 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEI   53 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEEC
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhh-ccCCCccCCcCCHHhceeC
Confidence            4799999999999988 59999999999999998 7789999999998887663

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=6.7e-14  Score=118.37  Aligned_cols=68  Identities=21%  Similarity=0.292  Sum_probs=60.0

Q ss_pred             CCCCccCcCccccCCCceec-cCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhc
Q 039015          277 TPDDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDN  347 (685)
Q Consensus       277 ~~~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~  347 (685)
                      +++.+.||||.++|.+||++ +|||+||+.||.+|+..   .||.|+..+...++.+|..+..+++.+....
T Consensus        19 l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~---~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~~~   87 (97)
T d1jm7b_          19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT---GCPVCYTPAWIQDLKINRQLDSMIQLCSKLR   87 (97)
T ss_dssp             HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTT---BCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred             hhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHhc---cccccCCcCchhhCcccHHHHHHHHHHHHHH
Confidence            45679999999999999976 89999999999999853   5999999998889999999999998875543

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3e-12  Score=103.31  Aligned_cols=50  Identities=22%  Similarity=0.311  Sum_probs=45.4

Q ss_pred             CccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCC
Q 039015          280 DFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKE  329 (685)
Q Consensus       280 ~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~  329 (685)
                      ...||||++.+.+|++++|||+||+.||.+|+..+..+||.||+.+....
T Consensus        23 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~   72 (79)
T d1fbva4          23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE   72 (79)
T ss_dssp             TTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred             CCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence            35699999999999999999999999999999977789999999997653

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.4e-11  Score=93.17  Aligned_cols=52  Identities=25%  Similarity=0.434  Sum_probs=42.9

Q ss_pred             CCccCcCccccCCCc-----eeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCC
Q 039015          279 DDFTCPISLEIMKDP-----VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKEL  330 (685)
Q Consensus       279 ~~~~CpIc~~~m~dP-----v~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l  330 (685)
                      ++..||||++.+..+     ++++|||+||..||.+|+..+...||.||+.+...++
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~   58 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccccc
Confidence            568999999865322     4568999999999999998877889999999876554

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.7e-11  Score=91.51  Aligned_cols=49  Identities=16%  Similarity=0.091  Sum_probs=42.5

Q ss_pred             CCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCc
Q 039015          279 DDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELL  331 (685)
Q Consensus       279 ~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~  331 (685)
                      +.+.|+||++.+.+|++++|||+||+.||.+|    ..+||.|++.++...-.
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~~~   53 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGADT   53 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCSSC
T ss_pred             CCCCCcccCcccCCCEEecCCCHHhHHHHHcC----CCcCcCCCCcccCCCCC
Confidence            34799999999999999999999999999765    67899999998765443

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=98.96  E-value=1.4e-10  Score=90.52  Aligned_cols=45  Identities=31%  Similarity=0.537  Sum_probs=40.2

Q ss_pred             ccCcCccccCCCcee-ccCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015          281 FTCPISLEIMKDPVT-LSTGHTYDRASILKWFRAGNSTCPKTGERLQ  326 (685)
Q Consensus       281 ~~CpIc~~~m~dPv~-~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~  326 (685)
                      -.||||++.+.+|++ ++|||+||..||.+|+.. +.+||.||.++.
T Consensus         6 d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~i~   51 (68)
T d1chca_           6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVE   51 (68)
T ss_dssp             CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCC
T ss_pred             CCCccCCcCccCCcEEeCCCCcCcHHHHHHHHHh-CCcCCCCCcchH
Confidence            359999999988865 699999999999999997 789999998874

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.84  E-value=5.8e-10  Score=82.78  Aligned_cols=48  Identities=25%  Similarity=0.533  Sum_probs=40.9

Q ss_pred             CCCCccCcCccccCCCc---eec-cCcccccHHHHHHHHHcCCCCCCCCCccc
Q 039015          277 TPDDFTCPISLEIMKDP---VTL-STGHTYDRASILKWFRAGNSTCPKTGERL  325 (685)
Q Consensus       277 ~~~~~~CpIc~~~m~dP---v~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l  325 (685)
                      ++++..|+||++.+.++   +.+ .|||.|+..||.+|+.. +.+||.||+++
T Consensus         2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i   53 (55)
T d1iyma_           2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV   53 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred             CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHh-CCcCCCCCCEe
Confidence            45678899999999763   344 69999999999999987 78999999875

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=6.8e-10  Score=81.49  Aligned_cols=47  Identities=17%  Similarity=0.293  Sum_probs=39.5

Q ss_pred             ccCcCccccCCCc----eeccCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015          281 FTCPISLEIMKDP----VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQS  327 (685)
Q Consensus       281 ~~CpIc~~~m~dP----v~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~  327 (685)
                      +.||||++.|.++    +.++|||+||+.||.+|+..++.+||.||+++..
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            3699999988643    3458999999999999998767789999998864

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.4e-06  Score=95.64  Aligned_cols=264  Identities=14%  Similarity=0.144  Sum_probs=185.4

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV  459 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~  459 (685)
                      .++.+...+.+.+..+|..|+..|..++....   ..-.+.-.+|.+..+.+++....+..|+..+..+...-....   
T Consensus        88 ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~---~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~---  161 (588)
T d1b3ua_          88 LLPPLESLATVEETVVRDKAVESLRAISHEHS---PSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV---  161 (588)
T ss_dssp             GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSC---HHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH---
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHH---
Confidence            46666677788889999999999999986322   222344556766677777777778888877777765433211   


Q ss_pred             hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcH
Q 039015          460 ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNH  539 (685)
Q Consensus       460 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~  539 (685)
                      ....++.+..+++.. ++.+|..|+.++..++..-.....  . ...++.|..++.++++.++..|+.+|..++..-+..
T Consensus       162 ~~~l~~~~~~l~~D~-~~~VR~~a~~~l~~~~~~~~~~~~--~-~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~  237 (588)
T d1b3ua_         162 KAELRQYFRNLCSDD-TPMVRRAAASKLGEFAKVLELDNV--K-SEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE  237 (588)
T ss_dssp             HHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCHHHH--H-HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHhcHHHH--H-HHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH
Confidence            122467788888887 999999999999998764332222  1 346788888999999999999999999887533321


Q ss_pred             HHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhcc
Q 039015          540 WRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCIN  619 (685)
Q Consensus       540 ~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~  619 (685)
                        -....+++.+..++ .+.+..++..++.+|..++..-..  .+.....++.+..++.+. .+.++..|+..|..++..
T Consensus       238 --~~~~~i~~~l~~~~-~D~~~~Vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ll~d~-~~~vr~~a~~~l~~~~~~  311 (588)
T d1b3ua_         238 --DLEALVMPTLRQAA-EDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDC-EAEVRAAASHKVKEFCEN  311 (588)
T ss_dssp             --HHHHHTHHHHHHHH-TCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHHHhc-ccccHHHHHHHHHhHHHHHHHhhh--hhhhhhhhHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence              12233678888888 677888999999999998763211  122334578888889887 999999999999999875


Q ss_pred             CcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 039015          620 GGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRIL  660 (685)
Q Consensus       620 ~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l  660 (685)
                      -+......... ..+++.+..++.+.+...+..+...+..+
T Consensus       312 l~~~~~~~~~~-~~i~~~l~~~~~d~~~~vr~~~~~~l~~~  351 (588)
T d1b3ua_         312 LSADCRENVIM-SQILPCIKELVSDANQHVKSALASVIMGL  351 (588)
T ss_dssp             SCTTTHHHHHH-HTHHHHHHHHHTCSCHHHHHHHHTTGGGG
T ss_pred             HhhhhhhhhhH-HHHHHHHHHhhcCCChHHHHHHHHHHhhh
Confidence            43322222111 34678888888888888877765554443

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=4e-06  Score=91.93  Aligned_cols=264  Identities=15%  Similarity=0.142  Sum_probs=169.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV  459 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~  459 (685)
                      .++.+.+.+.+.++.+|..|+..+..+++.-.   ........+|.+..++.+++..++..|+.++..++..-....  .
T Consensus       165 l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~--~  239 (588)
T d1b3ua_         165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE---LDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED--L  239 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC---HHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHH--H
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc---HHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHH--H
Confidence            45667777788999999999999999997322   223345678888899999999999999999998875432211  1


Q ss_pred             hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC--CC
Q 039015          460 ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH--SG  537 (685)
Q Consensus       460 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~--~~  537 (685)
                      ....++.+..++... +..+|..++.+|..++..-..  .+.. ...++.+..++.+.+..++..|+.+|..++..  ..
T Consensus       240 ~~~i~~~l~~~~~D~-~~~Vr~~~~~~l~~l~~~~~~--~~~~-~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~  315 (588)
T d1b3ua_         240 EALVMPTLRQAAEDK-SWRVRYMVADKFTELQKAVGP--EITK-TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD  315 (588)
T ss_dssp             HHHTHHHHHHHHTCS-SHHHHHHHHHTHHHHHHHHCH--HHHH-HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT
T ss_pred             HHHHHHHHHHhcccc-cHHHHHHHHHhHHHHHHHhhh--hhhh-hhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhh
Confidence            233578888888877 899999999999888643221  1222 45799999999999999999999999888743  23


Q ss_pred             cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 039015          538 NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALC  617 (685)
Q Consensus       538 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~  617 (685)
                      ......-..+++.+..++ ++.+..++..+..++..++..- +..... ...+|.+..++++. ++.++..++..+..++
T Consensus       316 ~~~~~~~~~i~~~l~~~~-~d~~~~vr~~~~~~l~~~~~~~-~~~~~~-~~l~p~l~~~l~d~-~~~v~~~~~~~l~~~~  391 (588)
T d1b3ua_         316 CRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPIL-GKDNTI-EHLLPLFLAQLKDE-CPEVRLNIISNLDCVN  391 (588)
T ss_dssp             THHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHH-CHHHHH-HHTHHHHHHHHTCS-CHHHHHHHHTTCHHHH
T ss_pred             hhhhhhHHHHHHHHHHhh-cCCChHHHHHHHHHHhhhhhcc-chhHHH-HHHHHHHHHHHHhh-hhhhhhHHHHHHHHHH
Confidence            333334445677777777 5666777766666665554311 111111 12345555556554 5666666555555544


Q ss_pred             ccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 039015          618 INGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILH  661 (685)
Q Consensus       618 ~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~  661 (685)
                      ..-+..   .+.  ..+++.+..++.+.+.+.+..+...+..+.
T Consensus       392 ~~~~~~---~~~--~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~  430 (588)
T d1b3ua_         392 EVIGIR---QLS--QSLLPAIVELAEDAKWRVRLAIIEYMPLLA  430 (588)
T ss_dssp             HHSCHH---HHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             hhcchh---hhh--hHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            322111   011  122445555555555555555554444443

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.52  E-value=3.3e-08  Score=85.24  Aligned_cols=49  Identities=16%  Similarity=0.323  Sum_probs=39.7

Q ss_pred             CCCccCcCccccCCCc------------------eeccCcccccHHHHHHHHHc----CCCCCCCCCcccc
Q 039015          278 PDDFTCPISLEIMKDP------------------VTLSTGHTYDRASILKWFRA----GNSTCPKTGERLQ  326 (685)
Q Consensus       278 ~~~~~CpIc~~~m~dP------------------v~~~cghtfcr~ci~~~~~~----~~~~CP~c~~~l~  326 (685)
                      +.+..|+||++.|.++                  ..++|||.||..||..|+..    ++.+||.||..+.
T Consensus        23 ~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~   93 (114)
T d1v87a_          23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             cccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhc
Confidence            3456899999988654                  34689999999999999985    3568999998764

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=4.3e-05  Score=74.33  Aligned_cols=229  Identities=13%  Similarity=0.084  Sum_probs=144.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV  459 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~  459 (685)
                      ..+.|+..|.++++.+|..|+..|..+..           ..++|.|+.+|.+++..++..|+.+|..+.........+ 
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~-   87 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNV-   87 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHH-
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccch-
Confidence            46788899999999999999999876632           245899999999999999999999999887655443333 


Q ss_pred             hcCcHHHHHHH-hcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 039015          460 ESGGLDFIVDM-VKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGN  538 (685)
Q Consensus       460 ~~g~i~~Lv~l-L~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n  538 (685)
                          ++.+... ++.. ++.++..|+.+|..+.......    . ...++.+...+.+.++.++..|+.++....     
T Consensus        88 ----~~~l~~~~l~d~-~~~vr~~a~~aL~~~~~~~~~~----~-~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~-----  152 (276)
T d1oyza_          88 ----FNILNNMALNDK-SACVRATAIESTAQRCKKNPIY----S-PKIVEQSQITAFDKSTNVRRATAFAISVIN-----  152 (276)
T ss_dssp             ----HHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHCGGG----H-HHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred             ----HHHHHHHHhcCC-ChhHHHHHHHHHHHHccccchh----h-HHHHHHHHHHhcCcchHHHHHHHHHHhhcc-----
Confidence                3344444 4455 8999999999998886533211    1 235677777777777888877777776542     


Q ss_pred             HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhc----------------HH----HHH---hcCChHHHHH
Q 039015          539 HWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDG----------------TI----AIL---HHGALDMIMK  595 (685)
Q Consensus       539 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~----------------~~----~i~---~~g~v~~Lv~  595 (685)
                           +..+++.++.++ .+.+......+..++..+......                +.    ++.   ...+++.|+.
T Consensus       153 -----~~~~~~~l~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~L~~  226 (276)
T d1oyza_         153 -----DKATIPLLINLL-KDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCD  226 (276)
T ss_dssp             -------CCHHHHHHHH-TCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             -----hHHHHHHHHHhc-ccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhhHHHHHH
Confidence                 234555566666 344444444444444443322110                00    001   1123566666


Q ss_pred             HhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcC-ChHHHHHHHHHH
Q 039015          596 ILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQG-SSRASKKASALI  657 (685)
Q Consensus       596 lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g-~~~~k~~A~~lL  657 (685)
                      .+.+   +.++..++.+|..+..             .++++.|..++.+. +..++..|...|
T Consensus       227 ~l~d---~~vr~~a~~aL~~ig~-------------~~~~~~L~~~l~~~~d~~vr~~A~~~L  273 (276)
T d1oyza_         227 ELKK---NTVYDDIIEAAGELGD-------------KTLLPVLDTMLYKFDDNEIITSAIDKL  273 (276)
T ss_dssp             HHTS---SSCCHHHHHHHHHHCC-------------GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred             HhCC---hHHHHHHHHHHHHcCC-------------HHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence            5543   3456666666665531             23577787777664 566776665544

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.32  E-value=1.8e-07  Score=70.46  Aligned_cols=49  Identities=18%  Similarity=0.262  Sum_probs=41.6

Q ss_pred             CCCccCcCccccCCCceeccC-----cccccHHHHHHHHHc-CCCCCCCCCcccc
Q 039015          278 PDDFTCPISLEIMKDPVTLST-----GHTYDRASILKWFRA-GNSTCPKTGERLQ  326 (685)
Q Consensus       278 ~~~~~CpIc~~~m~dPv~~~c-----ghtfcr~ci~~~~~~-~~~~CP~c~~~l~  326 (685)
                      ++...|+||++.+.++.+.+|     +|.|++.||.+|+.. ++.+||.|++.+.
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            356789999999999987765     599999999999974 6779999998764

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=2.3e-07  Score=75.68  Aligned_cols=44  Identities=18%  Similarity=0.452  Sum_probs=36.1

Q ss_pred             cCcCccccCCCc------------------eeccCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015          282 TCPISLEIMKDP------------------VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQ  326 (685)
Q Consensus       282 ~CpIc~~~m~dP------------------v~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~  326 (685)
                      .|+||.+.|.+|                  +.++|||.|+..||.+|+.. +.+||+||+...
T Consensus        23 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~   84 (88)
T d3dplr1          23 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE   84 (88)
T ss_dssp             CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred             cCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHH-CCcCCCCCCccc
Confidence            488887776652                  34589999999999999997 789999998764

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=2.3e-05  Score=93.20  Aligned_cols=271  Identities=11%  Similarity=0.090  Sum_probs=174.8

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV  459 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~  459 (685)
                      .|..|++++.+.|++.|.-|+..|......+...-..-.....++.|+++|.+.++++|..|+.+|..|...-.+..  +
T Consensus         4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~--~   81 (1207)
T d1u6gc_           4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ--V   81 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH--H
T ss_pred             hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh--H
Confidence            47888999999999999999988876543222111111123468999999999999999999999998876544321  1


Q ss_pred             hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc----h---hHHHHhhcCCCcHHHHHHHhcc-CCHHHHHHHHHHHHH
Q 039015          460 ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASI----E---EYRKLIGENPEAIPALVDMVRD-GTDRSKKNALVAIFG  531 (685)
Q Consensus       460 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~----~---~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~n  531 (685)
                       ...++.|+..+..+ +...+..+..+|..+...    .   .....+.  ...++.|...+.. .+...+..|+.+|..
T Consensus        82 -~~l~~~L~~~l~~~-~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~~v~~~al~~l~~  157 (1207)
T d1u6gc_          82 -ETIVDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPASSGSALAANVC--KKITGRLTSAIAKQEDVSVQLEALDIMAD  157 (1207)
T ss_dssp             -HHHHHHHHHHTTCS-SSHHHHHHHHHHHHHHHHCC-----CCTHHHHH--HHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhcCC-chhhhHHHHHHHHHHHHhcccccccchhHHHHH--HHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence             23567777777666 677777777776654321    1   1111111  1234445554443 456778888888888


Q ss_pred             hcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHH
Q 039015          532 LLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVS  611 (685)
Q Consensus       532 Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~  611 (685)
                      +....+.-..-....+++.|+..| ++++..++..|+.+|..++..-..  .. -...++.++..+..+.+...+..++.
T Consensus       158 l~~~~g~~l~~~~~~il~~l~~~l-~~~~~~vR~~A~~~l~~l~~~~~~--~~-~~~~~~~ll~~l~~~~~~~~~~~~~~  233 (1207)
T d1u6gc_         158 MLSRQGGLLVNFHPSILTCLLPQL-TSPRLAVRKRTIIALGHLVMSCGN--IV-FVDLIEHLLSELSKNDSMSTTRTYIQ  233 (1207)
T ss_dssp             HHHHTCSSCTTTHHHHHHHHGGGG-GCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred             HHHHhhHhhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHCCH--HH-HHHHHHHHHHHHccCCCHHHHHHHHH
Confidence            864332110001122456677777 567788999999999999874221  11 11236677775544336666777888


Q ss_pred             HHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015          612 LLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF  663 (685)
Q Consensus       612 ~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~  663 (685)
                      ++..++...+......   -..+++.+...+.+.++..++.|...+..+...
T Consensus       234 ~l~~l~~~~~~~~~~~---l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~  282 (1207)
T d1u6gc_         234 CIAAISRQAGHRIGEY---LEKIIPLVVKFCNVDDDELREYCIQAFESFVRR  282 (1207)
T ss_dssp             HHHHHHHHSSGGGTTS---CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcchhhHHH---HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHh
Confidence            8888887665432221   246799999999999998888888877777554

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=0.00036  Score=72.15  Aligned_cols=277  Identities=13%  Similarity=0.077  Sum_probs=172.1

Q ss_pred             HHHHHHHHhcC--CCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC--CCHHHHHHHHHHhhccccCcch-
Q 039015          380 LANFISDRLLE--GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS--KDSSTQENAIAALLNLSKHCKS-  454 (685)
Q Consensus       380 ~i~~Lv~~L~s--~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s--~~~~~~~~A~~aL~nLs~~~~~-  454 (685)
                      .++.++..+.+  .+...+..++..+..++.........-.-...++.++..+.+  .+..++..|+.++.++...... 
T Consensus       128 ~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~  207 (458)
T d1ibrb_         128 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN  207 (458)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHH
T ss_pred             hhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhh
Confidence            46777777755  455667778888887775433322222223457788888865  4568999999999888755432 


Q ss_pred             -hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-h-HHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHH
Q 039015          455 -KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-E-YRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFG  531 (685)
Q Consensus       455 -k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~n  531 (685)
                       ..........+.+...+..+ +++.+..++.+|..+.... + ....+ . ....+.+...+.+.++..+..|+..+..
T Consensus       208 ~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~i~~~~~~~~~~~l-~-~~~~~~~~~~~~~~~~~~~~~a~~~l~~  284 (458)
T d1ibrb_         208 FDKESERHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYM-G-PALFAITIEAMKSDIDEVALQGIEFWSN  284 (458)
T ss_dssp             HTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCGGGCTTTT-T-TTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHhHhhHHHHhcCC-CHHHHHHHHHHHHHHHHHhHHHHHHHH-H-HHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence             11222334566777777777 8999999999998886432 1 11112 1 2344455566677788888888888877


Q ss_pred             hcCCCC---------------------cHHHHHhcCChHHHHHHhcc------CCChhHHHHHHHHHHHHhcChhcHHHH
Q 039015          532 LLMHSG---------------------NHWRFLAAGAVPLLLNLLTS------SDSEELITDSLAVLATLAEKLDGTIAI  584 (685)
Q Consensus       532 Ls~~~~---------------------n~~~iv~~G~v~~Lv~lL~~------~~~~~~~~~al~~L~~La~~~~~~~~i  584 (685)
                      ++....                     ......-...++.+...+..      +.+..++..+..++..++.....  .+
T Consensus       285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~  362 (458)
T d1ibrb_         285 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DI  362 (458)
T ss_dssp             HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--TH
T ss_pred             HHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccH--hh
Confidence            752110                     11111112234445555421      12234666777777777652211  11


Q ss_pred             HhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 039015          585 LHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFY  664 (685)
Q Consensus       585 ~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~  664 (685)
                      .. ..++.+.+.+++. +...++.|+.+|..++............  ..+++.|..++++.++++|..|.+.|..+.++.
T Consensus       363 ~~-~l~~~i~~~l~s~-~~~~r~aal~~l~~i~~~~~~~~~~~~l--~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~  438 (458)
T d1ibrb_         363 VP-HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELL  438 (458)
T ss_dssp             HH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred             hh-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCHhHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence            11 1235555667766 8889999999999988654332212122  457899999999999999999999998887765


Q ss_pred             c
Q 039015          665 E  665 (685)
Q Consensus       665 ~  665 (685)
                      .
T Consensus       439 ~  439 (458)
T d1ibrb_         439 P  439 (458)
T ss_dssp             G
T ss_pred             h
Confidence            3

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=0.00044  Score=66.80  Aligned_cols=208  Identities=10%  Similarity=0.044  Sum_probs=133.1

Q ss_pred             hhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHH
Q 039015          419 EVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRK  498 (685)
Q Consensus       419 ~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~  498 (685)
                      +....+.|+.+|+++++.++..|+.+|..+.          ...+++.++.+++.. +..+|..|+.+|..+........
T Consensus        17 ~~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~----------~~~~~~~l~~~l~d~-~~~vr~~a~~aL~~l~~~~~~~~   85 (276)
T d1oyza_          17 KKLNDDELFRLLDDHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDK-NYIRRDIGAFILGQIKICKKCED   85 (276)
T ss_dssp             HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCS-SHHHHHHHHHHHHHSCCCTTTHH
T ss_pred             ccCCHHHHHHHhcCCCHHHHHHHHHHHHhhC----------CHhHHHHHHHHHcCC-CHHHHHHHHHHHHHhcccccccc
Confidence            3456778999999999999999999997653          245689999999988 99999999999998865443322


Q ss_pred             HhhcCCCcHHHHHH-HhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC
Q 039015          499 LIGENPEAIPALVD-MVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK  577 (685)
Q Consensus       499 ~i~~~~g~i~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~  577 (685)
                      .      .++.|.. ++.+.++.++..|+.+|.+++.......    ..+++.+...+ .+.+..++..++.++..+.  
T Consensus        86 ~------~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~----~~~~~~l~~~~-~d~~~~vr~~a~~~l~~~~--  152 (276)
T d1oyza_          86 N------VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS----PKIVEQSQITA-FDKSTNVRRATAFAISVIN--  152 (276)
T ss_dssp             H------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH----HHHHHHHHHHT-TCSCHHHHHHHHHHHHTC---
T ss_pred             c------hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhh----HHHHHHHHHHh-cCcchHHHHHHHHHHhhcc--
Confidence            2      2344444 4567789999999999999875443221    12456677777 5667777777766655432  


Q ss_pred             hhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHH------------------HHHHHH--hcCCcHHH
Q 039015          578 LDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGAN------------------VVALLV--KSPSLMGS  637 (685)
Q Consensus       578 ~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~------------------~~~~l~--~~~g~i~~  637 (685)
                              +...++.+..++... +...+..+..++..+.......                  ....+.  ....+++.
T Consensus       153 --------~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~  223 (276)
T d1oyza_         153 --------DKATIPLLINLLKDP-NGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSV  223 (276)
T ss_dssp             ----------CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHH
T ss_pred             --------hHHHHHHHHHhcccc-cchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhhHHH
Confidence                    223456666666554 5555555555554444332110                  011111  11336778


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHH
Q 039015          638 LYSLLSQGSSRASKKASALIRILH  661 (685)
Q Consensus       638 L~~Ll~~g~~~~k~~A~~lL~~l~  661 (685)
                      |+..+.+.+  .+..|...|..+.
T Consensus       224 L~~~l~d~~--vr~~a~~aL~~ig  245 (276)
T d1oyza_         224 LCDELKKNT--VYDDIIEAAGELG  245 (276)
T ss_dssp             HHHHHTSSS--CCHHHHHHHHHHC
T ss_pred             HHHHhCChH--HHHHHHHHHHHcC
Confidence            888777543  4555666655553

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.59  E-value=0.0023  Score=66.64  Aligned_cols=277  Identities=12%  Similarity=0.098  Sum_probs=179.5

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhh-CCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH-
Q 039015          382 NFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEV-GCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV-  459 (685)
Q Consensus       382 ~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~-G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~-  459 (685)
                      ..+...|.+++.-....+...+..++..+..+....-.. .....+-.+..+.+...+.-|+..|..|...++.|..+. 
T Consensus       125 ~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~  204 (477)
T d1ho8a_         125 QLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWL  204 (477)
T ss_dssp             HHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHT
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHhccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHH
Confidence            334445555565566777777777776443333321111 223333344466888999999999999999988898886 


Q ss_pred             -hcCcHHHHHHHhcC----------------CCCHHHHHHHHHHHHHhcCchhHHHHhhcCC--CcHHHHHHHhccC-CH
Q 039015          460 -ESGGLDFIVDMVKK----------------GLKVEARQHAAATLFYIASIEEYRKLIGENP--EAIPALVDMVRDG-TD  519 (685)
Q Consensus       460 -~~g~i~~Lv~lL~~----------------~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~--g~i~~Lv~lL~~~-~~  519 (685)
                       +...+++++.+|+.                +.....+-+++-+++-||++++....+.. .  +.|+.|+++++.. ..
T Consensus       205 ~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~-~~~~~i~~l~~i~~~s~KE  283 (477)
T d1ho8a_         205 HEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQ-KYLSDFLDLLKLVKITIKE  283 (477)
T ss_dssp             THHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHT-TSHHHHHHHHHHHHHCCSH
T ss_pred             cccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHH-hhhHHHHHHHHHHHhhhHH
Confidence             35567788887753                11246688999999999999988888876 4  4599999999754 47


Q ss_pred             HHHHHHHHHHHHhcCCCC--c----HHHHHhcCChHHHHHHhccC--CChhHHHHHHHHHHHHhc---------------
Q 039015          520 RSKKNALVAIFGLLMHSG--N----HWRFLAAGAVPLLLNLLTSS--DSEELITDSLAVLATLAE---------------  576 (685)
Q Consensus       520 ~~~~~A~~aL~nLs~~~~--n----~~~iv~~G~v~~Lv~lL~~~--~~~~~~~~al~~L~~La~---------------  576 (685)
                      .+..-++.+|.|++....  +    ...++..++.+. +..|...  .++++.+..-.+-..|..               
T Consensus       284 KvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev  362 (477)
T d1ho8a_         284 KVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAEL  362 (477)
T ss_dssp             HHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            888899999999986543  2    333556665554 5555333  356665544333222221               


Q ss_pred             -------ChhcHH-HH--------HhcCC--hHHHHHHhhc---------CCChhHHHHHHHHHHHHhccCcHHHHHHHH
Q 039015          577 -------KLDGTI-AI--------LHHGA--LDMIMKILDS---------CTSRAGKEYCVSLLLALCINGGANVVALLV  629 (685)
Q Consensus       577 -------~~~~~~-~i--------~~~g~--v~~Lv~lL~~---------~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~  629 (685)
                             +|..+. .+        -+.+.  +..|+++|..         +.++.+..-|+-=+..+|.+-| ..+..+.
T Consensus       363 ~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P-~gr~il~  441 (477)
T d1ho8a_         363 DSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLP-ESIDVLD  441 (477)
T ss_dssp             HHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCT-THHHHHH
T ss_pred             hcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCc-chhHHHH
Confidence                   222221 11        11222  5778888862         1144455566666778887764 3455555


Q ss_pred             hcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 039015          630 KSPSLMGSLYSLLSQGSSRASKKASALIRILHE  662 (685)
Q Consensus       630 ~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~  662 (685)
                      + -|+-..+..|+.+.++.++..|-..++-+=.
T Consensus       442 ~-lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         442 K-TGGKADIMELLNHSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             H-HSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             H-cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            5 7889999999999999999988877765543

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.00033  Score=80.38  Aligned_cols=275  Identities=14%  Similarity=0.049  Sum_probs=162.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcch--hH
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS--KS  456 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~--k~  456 (685)
                      ..++.|+..+++.++.+|..|+++|..++......-..-.-...++.++..+.+.++.+++.|+.+|.++......  ..
T Consensus       436 ~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p  515 (888)
T d1qbkb_         436 ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVP  515 (888)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGG
T ss_pred             hhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            4578888899999999999999999988753221111112246788899988889999999999999998743221  11


Q ss_pred             HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch---hHHHHhhcCCCcHHHHHHHhcc--CCHHHHHHHHHHHHH
Q 039015          457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE---EYRKLIGENPEAIPALVDMVRD--GTDRSKKNALVAIFG  531 (685)
Q Consensus       457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~---~~~~~i~~~~g~i~~Lv~lL~~--~~~~~~~~A~~aL~n  531 (685)
                      .  -...++.++..+... ....+..+..++..++..-   -.+..+..  ..++.++.....  .+.......+.+|..
T Consensus       516 ~--~~~il~~l~~~l~~~-~~~~~~~~~~al~~l~~~~~~~~~~~~~~~--~l~~~l~~~~~~~~~~~~~~~~~le~l~~  590 (888)
T d1qbkb_         516 Y--LAYILDTLVFAFSKY-QHKNLLILYDAIGTLADSVGHHLNKPEYIQ--MLMPPLIQKWNMLKDEDKDLFPLLECLSS  590 (888)
T ss_dssp             G--HHHHHHHHHHHTTTC-CHHHHHHHHHHHHHHHHHHGGGGCSHHHHH--HHHHHHHHHHTTSCTTCTTHHHHHHHHHH
T ss_pred             H--HHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHhhhccccchHHHH--HHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            1  134567777777776 6666666666666554211   11111111  134445544432  122222334455554


Q ss_pred             hcC--CCCcHHHHHhcCChHHHHHHhc----------------cCCChhHHHHHHHHHHHHhcC--hhcHHHHHhcCChH
Q 039015          532 LLM--HSGNHWRFLAAGAVPLLLNLLT----------------SSDSEELITDSLAVLATLAEK--LDGTIAILHHGALD  591 (685)
Q Consensus       532 Ls~--~~~n~~~iv~~G~v~~Lv~lL~----------------~~~~~~~~~~al~~L~~La~~--~~~~~~i~~~g~v~  591 (685)
                      ++.  ........ . ..++.+++++.                ...+.+....++.++..++..  ......+.....++
T Consensus       591 i~~~~~~~~~~~~-~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~  668 (888)
T d1qbkb_         591 VATALQSGFLPYC-E-PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILT  668 (888)
T ss_dssp             HHHHSTTTTHHHH-H-HHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHH
T ss_pred             HHHHhHHHHhhhH-H-HHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHH
Confidence            432  11211111 0 01112222211                123456667777777777652  22222233333467


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 039015          592 MIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFY  664 (685)
Q Consensus       592 ~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~  664 (685)
                      .+...+.+. ++.+++.|..++..++...+......+.   .+++.|..-+.+....++..|.+.+..+....
T Consensus       669 ~l~~~l~~~-~~~vr~~a~~llgdl~~~~~~~~~~~l~---~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~  737 (888)
T d1qbkb_         669 LMYQCMQDK-MPEVRQSSFALLGDLTKACFQHVKPCIA---DFMPILGTNLNPEFISVCNNATWAIGEISIQM  737 (888)
T ss_dssp             HHHHHHTCS-SHHHHHHHHHHHHHHHHHCGGGTGGGHH---HHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCC-ChHHHHHHHHHHHHHHHhhhHHHHHHHH---HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHH
Confidence            777788876 8999999999999998876655433332   24667777777777778888888877665543

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=1.6e-05  Score=65.35  Aligned_cols=44  Identities=11%  Similarity=0.225  Sum_probs=33.6

Q ss_pred             CccCcCccccCCC---ceeccCcccccHHHHHHHHHc----CC---CCCCCCCc
Q 039015          280 DFTCPISLEIMKD---PVTLSTGHTYDRASILKWFRA----GN---STCPKTGE  323 (685)
Q Consensus       280 ~~~CpIc~~~m~d---Pv~~~cghtfcr~ci~~~~~~----~~---~~CP~c~~  323 (685)
                      ...||||++.+..   +...+|||.||+.|+..|+..    +.   .+||.|+-
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            4679999988753   445589999999999999973    22   26998643

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.55  E-value=1.1e-05  Score=68.31  Aligned_cols=109  Identities=10%  Similarity=0.133  Sum_probs=86.2

Q ss_pred             hcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHH
Q 039015          430 LSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPA  509 (685)
Q Consensus       430 L~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~  509 (685)
                      |+++|+.++..|+.+|..+.           ..+++.|+..|.++ ++.+|..|+.+|.++.          . .++++.
T Consensus         1 L~D~~~~VR~~A~~aL~~~~-----------~~~~~~L~~~l~d~-~~~vR~~a~~~L~~~~----------~-~~~~~~   57 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG-----------DEAFEPLLESLSNE-DWRIRGAAAWIIGNFQ----------D-ERAVEP   57 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS-----------STTHHHHHHGGGCS-CHHHHHHHHHHHGGGC----------S-HHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhC-----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHhcc----------h-hhhHHH
Confidence            45667777777777777653           24678899999988 9999999999987653          2 457899


Q ss_pred             HHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHH
Q 039015          510 LVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLA  572 (685)
Q Consensus       510 Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~  572 (685)
                      |+.+|++.++.++..|+.+|..+.          ..++++.|..++ .+++..++..|+.+|.
T Consensus        58 L~~~l~d~~~~VR~~a~~aL~~i~----------~~~~~~~L~~ll-~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          58 LIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLA-ETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHT-TSCCTHHHHHHHHHGG
T ss_pred             HHhhhccchhHHHHHHHHHHHHhC----------ccchHHHHHHHH-cCCCHHHHHHHHHHHH
Confidence            999999999999999999998773          234678888888 6778889888887763

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.00048  Score=79.01  Aligned_cols=278  Identities=13%  Similarity=0.111  Sum_probs=164.7

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc--chhH
Q 039015          379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC--KSKS  456 (685)
Q Consensus       379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~--~~k~  456 (685)
                      ..++.+.+.+.+.++..|..|+.++..++.+..+.-.... ...+|.|+..|+++++.++..|+++|..++..-  ....
T Consensus       395 ~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~  473 (888)
T d1qbkb_         395 HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD  473 (888)
T ss_dssp             HHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHH
T ss_pred             HHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            3466777778888999999999999998864322111111 245788889999999999999999999887532  1122


Q ss_pred             HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch--hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015          457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE--EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM  534 (685)
Q Consensus       457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  534 (685)
                      .. -...++.++..+..+ ++.++..|+.+|.++....  .....+   ...++.|+..+.......+..+..++..++.
T Consensus       474 ~~-~~~~l~~ll~~l~d~-~~~V~~~a~~al~~l~~~~~~~l~p~~---~~il~~l~~~l~~~~~~~~~~~~~al~~l~~  548 (888)
T d1qbkb_         474 TY-LKPLMTELLKRILDS-NKRVQEAACSAFATLEEEACTELVPYL---AYILDTLVFAFSKYQHKNLLILYDAIGTLAD  548 (888)
T ss_dssp             HH-TTTHHHHHHHHHSSS-CHHHHHHHHHHHHHHHHHHTTSSGGGH---HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred             hh-hhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhhhhhhhHH---HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            22 346788899988888 8999999999999987432  111112   2356777777777776666666666666542


Q ss_pred             ---CCCcHHHHHhcCChHHHHHHhccC-CChhHHHHHHHHHHHHhcC--hhcH---HHHHhcCChHHHHHH--------h
Q 039015          535 ---HSGNHWRFLAAGAVPLLLNLLTSS-DSEELITDSLAVLATLAEK--LDGT---IAILHHGALDMIMKI--------L  597 (685)
Q Consensus       535 ---~~~n~~~iv~~G~v~~Lv~lL~~~-~~~~~~~~al~~L~~La~~--~~~~---~~i~~~g~v~~Lv~l--------L  597 (685)
                         ..-+....++ ..++.++.....- .+.......+.+|..++..  ....   ..+.+. .+..+...        .
T Consensus       549 ~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~  626 (888)
T d1qbkb_         549 SVGHHLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQR-CVNLVQKTLAQAMLNNA  626 (888)
T ss_dssp             HHGGGGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             hhhccccchHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence               2222233322 2455555554321 1222223344444444321  1111   111110 01111110        0


Q ss_pred             h----cCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc
Q 039015          598 D----SCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYE  665 (685)
Q Consensus       598 ~----~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~  665 (685)
                      .    ..........+..++..++..-+......+.. ..+++.+...+++.++..++.|..++..+..+..
T Consensus       627 ~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~-~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~  697 (888)
T d1qbkb_         627 QPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVAR-SNILTLMYQCMQDKMPEVRQSSFALLGDLTKACF  697 (888)
T ss_dssp             CTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHT-SCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred             ccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhH-hhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhh
Confidence            0    01133445566666766665433333333333 5688899999999999999999988887776543

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.34  E-value=0.0002  Score=60.06  Aligned_cols=88  Identities=20%  Similarity=0.227  Sum_probs=75.4

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHh
Q 039015          421 GCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLI  500 (685)
Q Consensus       421 G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i  500 (685)
                      .+++.|+..|.+++..++..|+.+|.++.          ..++++.|+..|++. ++.+|..|+.+|..+          
T Consensus        22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~----------~~~~~~~L~~~l~d~-~~~VR~~a~~aL~~i----------   80 (111)
T d1te4a_          22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQ----------DERAVEPLIKLLEDD-SGFVRSGAARSLEQI----------   80 (111)
T ss_dssp             TTHHHHHHGGGCSCHHHHHHHHHHHGGGC----------SHHHHHHHHHHHHHC-CTHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcc----------hhhhHHHHHhhhccc-hhHHHHHHHHHHHHh----------
Confidence            46889999999999999999999998764          245689999999988 899999999999765          


Q ss_pred             hcCCCcHHHHHHHhccCCHHHHHHHHHHHH
Q 039015          501 GENPEAIPALVDMVRDGTDRSKKNALVAIF  530 (685)
Q Consensus       501 ~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~  530 (685)
                      +. .++++.|..++.++++.++..|+.+|-
T Consensus        81 ~~-~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          81 GG-ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             CS-HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             Cc-cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            33 567899999999999999999988873

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.31  E-value=0.0046  Score=68.91  Aligned_cols=267  Identities=11%  Similarity=0.048  Sum_probs=163.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC--CCHHHHHHHHHHhhccccCcchh--H
Q 039015          381 ANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS--KDSSTQENAIAALLNLSKHCKSK--S  456 (685)
Q Consensus       381 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s--~~~~~~~~A~~aL~nLs~~~~~k--~  456 (685)
                      ...|...+.+.|.+.|..|-..|..+..++.        .++++.|..++.+  .+..++..|+..|.|........  .
T Consensus         7 ~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~   78 (861)
T d2bpta1           7 AQLLENSILSPDQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQ   78 (861)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhh
Confidence            3444455678899999999999988876331        2467788888865  45678888988888875433211  0


Q ss_pred             ----HH---H----hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCC-HHHHHH
Q 039015          457 ----MV---V----ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGT-DRSKKN  524 (685)
Q Consensus       457 ----~i---~----~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~  524 (685)
                          ..   +    ....-..++..|.+. +..+|..++.++..++..+-...   .=+..++.|+..+.+.+ ...+..
T Consensus        79 ~~~~~~~~~i~~~~~~~ik~~ll~~l~~~-~~~vr~~~a~~i~~i~~~~~p~~---~wpeli~~L~~~~~s~~~~~~~~~  154 (861)
T d2bpta1          79 QFAQRWITQVSPEAKNQIKTNALTALVSI-EPRIANAAAQLIAAIADIELPHG---AWPELMKIMVDNTGAEQPENVKRA  154 (861)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHGGGT---CCHHHHHHHHHHTSTTSCHHHHHH
T ss_pred             hHHhhhHhcCCHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhCCcC---chHHHHHHHHHHhcCCCcHHHHHH
Confidence                00   0    122345566777777 88999999999888865431110   11246777888877655 556778


Q ss_pred             HHHHHHHhcCCCCcHHHHHhcC---ChHHHHHHhc-cCCChhHHHHHHHHHHHHhcChhcHHH--HHhcCChHHHHHHhh
Q 039015          525 ALVAIFGLLMHSGNHWRFLAAG---AVPLLLNLLT-SSDSEELITDSLAVLATLAEKLDGTIA--ILHHGALDMIMKILD  598 (685)
Q Consensus       525 A~~aL~nLs~~~~n~~~iv~~G---~v~~Lv~lL~-~~~~~~~~~~al~~L~~La~~~~~~~~--i~~~g~v~~Lv~lL~  598 (685)
                      |+.+|..++..-+......-..   .+..+++.+. .+.+..++..++.++.++...-.....  ......++.+...+.
T Consensus       155 al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  234 (861)
T d2bpta1         155 SLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQ  234 (861)
T ss_dssp             HHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhc
Confidence            8899988874433221111111   2233333332 244678889999999988764221110  111113556667777


Q ss_pred             cCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 039015          599 SCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHE  662 (685)
Q Consensus       599 ~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~  662 (685)
                      .. ++..+..+..+|..++...++.....+..  -+...+.....+.++..+..+..++..+..
T Consensus       235 ~~-~~~~~~~~~~~l~~i~~~~~~~~~~~l~~--~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~  295 (861)
T d2bpta1         235 AE-DIEVQAAAFGCLCKIMSKYYTFMKPYMEQ--ALYALTIATMKSPNDKVASMTVEFWSTICE  295 (861)
T ss_dssp             CS-CHHHHHHHHHHHHHHHHHHGGGCHHHHHH--THHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            77 89999999999999987654443333322  122334455556677777777776665544

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00047  Score=81.46  Aligned_cols=232  Identities=15%  Similarity=0.150  Sum_probs=148.9

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhcccc----Ccc
Q 039015          378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSK----HCK  453 (685)
Q Consensus       378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~----~~~  453 (685)
                      +..++.|++.|...++++|..|+++|..++....+..   . ...++.|+..+.+++...+..+..+|..+..    ...
T Consensus        44 ~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~---~-~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~  119 (1207)
T d1u6gc_          44 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ---V-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS  119 (1207)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH---H-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh---H-HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccc
Confidence            3468889999999999999999999999987443321   1 2346778877777777778877777765532    111


Q ss_pred             hh--HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhc-CCCcHHHHHHHhccCCHHHHHHHHHHHH
Q 039015          454 SK--SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGE-NPEAIPALVDMVRDGTDRSKKNALVAIF  530 (685)
Q Consensus       454 ~k--~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~A~~aL~  530 (685)
                      +.  ...+....++.+...+.+..+..++..|..+|..+......  .+.. ....++.|+..+.+.+..+++.|+.+|.
T Consensus       120 ~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~--~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~  197 (1207)
T d1u6gc_         120 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG--LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALG  197 (1207)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS--SCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhH--hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            11  11122334555666666655788888888888877543211  0100 0235777777888888999999999999


Q ss_pred             HhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHh--cCChHHHHHHhhcCCChhHHHH
Q 039015          531 GLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILH--HGALDMIMKILDSCTSRAGKEY  608 (685)
Q Consensus       531 nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~--~g~v~~Lv~lL~~~~s~~~~e~  608 (685)
                      .|+.+-...   .-...++.++..|..+.+...+..++.++..++.....  .+..  ...++.++..+... ++..++.
T Consensus       198 ~l~~~~~~~---~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~l~~i~~~l~~~l~~~-~~~~r~~  271 (1207)
T d1u6gc_         198 HLVMSCGNI---VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVD-DDELREY  271 (1207)
T ss_dssp             HHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSC-CTTTHHH
T ss_pred             HHHHHCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcch--hhHHHHHHHHHHHHHHhcCc-cHHHHHH
Confidence            998654321   11234677777775555445555566666666542111  1211  12367788888877 8899999


Q ss_pred             HHHHHHHHhccCc
Q 039015          609 CVSLLLALCINGG  621 (685)
Q Consensus       609 a~~~L~~L~~~~~  621 (685)
                      ++.++..++...+
T Consensus       272 al~~l~~l~~~~~  284 (1207)
T d1u6gc_         272 CIQAFESFVRRCP  284 (1207)
T ss_dssp             HHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhCh
Confidence            9999988887654

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.83  E-value=0.073  Score=54.95  Aligned_cols=257  Identities=14%  Similarity=0.110  Sum_probs=157.3

Q ss_pred             HHHHHHHHhc-CCCHHHHHHHHHHHHHHhhcCCchhhH---HHhhC--CHHHHHHhhcCCCHHHHHHHHHHhhccccCcc
Q 039015          380 LANFISDRLL-EGTSEEKNKVAYEVRLLTKSSIFNRSC---LVEVG--CIPSLLKLLSSKDSSTQENAIAALLNLSKHCK  453 (685)
Q Consensus       380 ~i~~Lv~~L~-s~~~~~~~~a~~~L~~La~~~~~~r~~---i~~~G--~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~  453 (685)
                      .+..++..|. .+.++...-.+..+..|...++.....   +.+..  ..+++..+|.+++.-+...+..++..++....
T Consensus        75 ~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~  154 (477)
T d1ho8a_          75 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGL  154 (477)
T ss_dssp             THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhccc
Confidence            3566777775 456777777777777777655543232   11212  23455666766777777777777777765543


Q ss_pred             hhHHHHh-cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcC-CCcHHHHHHHhccCCHHHHHHHHHHHHH
Q 039015          454 SKSMVVE-SGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGEN-PEAIPALVDMVRDGTDRSKKNALVAIFG  531 (685)
Q Consensus       454 ~k~~i~~-~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~n  531 (685)
                      ......+ ..-...+...|.++.+.+...-|+..|..|...+++|..+... ...+++|+++|+..              
T Consensus       155 ~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a--------------  220 (477)
T d1ho8a_         155 HNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRA--------------  220 (477)
T ss_dssp             CCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHH--------------
T ss_pred             cccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHH--------------
Confidence            3222221 1111223333434337888888999999999999999998541 34788888887631              


Q ss_pred             hcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcC--ChHHHHHHhhcCCChhHHHHH
Q 039015          532 LLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHG--ALDMIMKILDSCTSRAGKEYC  609 (685)
Q Consensus       532 Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g--~v~~Lv~lL~~~~s~~~~e~a  609 (685)
                                 +..+....++.-..+.....+.=.++-+++.|+.+++....+.+..  .++.|+.+++..+...+..-+
T Consensus       221 -----------~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~  289 (477)
T d1ho8a_         221 -----------TDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLC  289 (477)
T ss_dssp             -----------HC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred             -----------hcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence                       1111222233333222345566778889999999999888887765  389999999877688899999


Q ss_pred             HHHHHHHhccCc----HHHHHHHHhcCCcHHHHHHHHhcC--ChHHHHHHHHHHHHHHH
Q 039015          610 VSLLLALCINGG----ANVVALLVKSPSLMGSLYSLLSQG--SSRASKKASALIRILHE  662 (685)
Q Consensus       610 ~~~L~~L~~~~~----~~~~~~l~~~~g~i~~L~~Ll~~g--~~~~k~~A~~lL~~l~~  662 (685)
                      +++|.|++....    ......+.. .++.+.+..|....  ++....-...|-..|.+
T Consensus       290 l~~l~Nll~~~~~~~~~~~~~~~v~-~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~  347 (477)
T d1ho8a_         290 ISIILQCCSTRVKQHKKVIKQLLLL-GNALPTVQSLSERKYSDEELRQDISNLKEILEN  347 (477)
T ss_dssp             HHHHHHTTSSSSTTHHHHHHHHHHH-HCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhhhhHHHHHHHH-cchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            999999997532    223344444 45555554444433  66666666666555554

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.70  E-value=0.027  Score=62.32  Aligned_cols=277  Identities=10%  Similarity=0.051  Sum_probs=158.8

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCC-CHHHHHHHHHHhhccccCcchh-HHHH
Q 039015          382 NFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSK-DSSTQENAIAALLNLSKHCKSK-SMVV  459 (685)
Q Consensus       382 ~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~-~~~~~~~A~~aL~nLs~~~~~k-~~i~  459 (685)
                      ..+++.+.+.++.++..++..+..++...-....|   ...+|.|+..+.++ +...+..|+.+|..+...-... ..+.
T Consensus        98 ~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~w---peli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~  174 (861)
T d2bpta1          98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAW---PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALV  174 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCC---HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTG
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCch---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            45567778888999999999999887632111011   23467777777664 4567888888888876443221 1111


Q ss_pred             -h-cCcHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCchh-HHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC
Q 039015          460 -E-SGGLDFIVDMVK-KGLKVEARQHAAATLFYIASIEE-YRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH  535 (685)
Q Consensus       460 -~-~g~i~~Lv~lL~-~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~  535 (685)
                       . ...+..++..+. ...+..++..|..++.++...-. +-.........++.|...+++++++.+..+..+|..++..
T Consensus       175 ~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~  254 (861)
T d2bpta1         175 SSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSK  254 (861)
T ss_dssp             GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence             1 233444455443 23368899999999988764322 1111111123677788888889999999999999888643


Q ss_pred             C-CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHH-------------------------------
Q 039015          536 S-GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIA-------------------------------  583 (685)
Q Consensus       536 ~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~-------------------------------  583 (685)
                      . +.-...+.. .+..+......+.++.++..++..+..++........                               
T Consensus       255 ~~~~~~~~l~~-~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l  333 (861)
T d2bpta1         255 YYTFMKPYMEQ-ALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLL  333 (861)
T ss_dssp             HGGGCHHHHHH-THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHH-HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 211111111 2233322222345566666666665554432110000                               


Q ss_pred             ------------------------H---HhcCChHHHHH----HhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcC
Q 039015          584 ------------------------I---LHHGALDMIMK----ILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSP  632 (685)
Q Consensus       584 ------------------------i---~~~g~v~~Lv~----lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~  632 (685)
                                              +   .....++.+..    .+.+. +...++.|+.++..++.............  
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~i~~~~~~~~~~~~l~--  410 (861)
T d2bpta1         334 TRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITAD-NWRNREAAVMAFGSIMDGPDKVQRTYYVH--  410 (861)
T ss_dssp             TCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHHH--
T ss_pred             HHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhH-HHHHHHHHHHHHHHHHhhcchhhHHHHHH--
Confidence                                    0   00001222222    22233 56667777777777776554443333332  


Q ss_pred             CcHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc
Q 039015          633 SLMGSLYSLLSQGSSRASKKASALIRILHEFYE  665 (685)
Q Consensus       633 g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~  665 (685)
                      .+++.+...+.+.++..+..|.+.+..+..+..
T Consensus       411 ~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  443 (861)
T d2bpta1         411 QALPSILNLMNDQSLQVKETTAWCIGRIADSVA  443 (861)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhc
Confidence            357888999999999999999988887776543

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.11  Score=57.56  Aligned_cols=274  Identities=14%  Similarity=0.089  Sum_probs=163.9

Q ss_pred             HHHHHHHHhcCC--CHHHHHHHHHHHHHHhhcCCchhhHHHh--hCCHHHHHHhhcC--CCHHHHHHHHHHhhccccCcc
Q 039015          380 LANFISDRLLEG--TSEEKNKVAYEVRLLTKSSIFNRSCLVE--VGCIPSLLKLLSS--KDSSTQENAIAALLNLSKHCK  453 (685)
Q Consensus       380 ~i~~Lv~~L~s~--~~~~~~~a~~~L~~La~~~~~~r~~i~~--~G~ip~Lv~lL~s--~~~~~~~~A~~aL~nLs~~~~  453 (685)
                      .++.|.+.+.++  +...+..++..|..+++.-..  ..+..  ...++.++..+.+  .+..++..|+.++.+......
T Consensus       129 li~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~--~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~  206 (876)
T d1qgra_         129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  206 (876)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhh
Confidence            478888888654  466777889999988863221  22221  2467888888865  356789999998877654432


Q ss_pred             hh--HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-h-HHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHH
Q 039015          454 SK--SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-E-YRKLIGENPEAIPALVDMVRDGTDRSKKNALVAI  529 (685)
Q Consensus       454 ~k--~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL  529 (685)
                      ..  ......-.++.+...+..+ +.+.+..+...|..+.... + ....+ . ....+.+...+.+..+.....++..+
T Consensus       207 ~~~~~~~~~~~i~~~l~~~~~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~-~-~~l~~~~~~~~~~~~~~~~~~~~~~~  283 (876)
T d1qgra_         207 ANFDKESERHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYM-G-PALFAITIEAMKSDIDEVALQGIEFW  283 (876)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSGGGCHHHH-T-TTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhHHHHHHHH-H-HHHHHHHHHHhccccHHHHHHHHHHH
Confidence            21  1111222456667777777 8999999999998886432 2 22222 2 34555666677777788877777766


Q ss_pred             HHhcCCCC---------------------cHHHHHhcCChHHHHHHhcc------CCChhHHHHHHHHHHHHhcChhcHH
Q 039015          530 FGLLMHSG---------------------NHWRFLAAGAVPLLLNLLTS------SDSEELITDSLAVLATLAEKLDGTI  582 (685)
Q Consensus       530 ~nLs~~~~---------------------n~~~iv~~G~v~~Lv~lL~~------~~~~~~~~~al~~L~~La~~~~~~~  582 (685)
                      ..++....                     +-........++.+...+..      +....+...|..++..++.....  
T Consensus       284 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--  361 (876)
T d1qgra_         284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--  361 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--
T ss_pred             HHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhh--
Confidence            66543111                     11111112234444444421      11233566666666666543211  


Q ss_pred             HHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 039015          583 AILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHE  662 (685)
Q Consensus       583 ~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~  662 (685)
                      .+.. ..++.+.+.+.+. +...++.++.++..+.............  ..+++.+...+.+.++..+..|.+.+..+.+
T Consensus       362 ~~~~-~~~~~i~~~l~~~-~~~~r~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~  437 (876)
T d1qgra_         362 DIVP-HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE  437 (876)
T ss_dssp             GGHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             hhhh-hhHHHHHHhhccc-hHHHHHHHHHHHHhhhhhhhHHHHHHHH--HHHHHHHHHhhcCCccHHHHHHHHHHHHHHH
Confidence            0100 0123344455555 7788888888888877654333333332  2358899999999999999999888888776


Q ss_pred             hh
Q 039015          663 FY  664 (685)
Q Consensus       663 ~~  664 (685)
                      +.
T Consensus       438 ~~  439 (876)
T d1qgra_         438 LL  439 (876)
T ss_dssp             HC
T ss_pred             Hc
Confidence            54

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.015  Score=59.33  Aligned_cols=192  Identities=11%  Similarity=0.097  Sum_probs=123.9

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchh----
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSK----  455 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k----  455 (685)
                      ..+.+...+.+.+++.+..++..|..++...+..-.........+.+...+.+.+.+++..|+..+..++......    
T Consensus       217 ~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~  296 (458)
T d1ibrb_         217 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEA  296 (458)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3455666678889999999999999998755432222222233455566777888999999998887775332110    


Q ss_pred             -----------------HHHHhcCcHHHHHHHhcCC------CCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHH
Q 039015          456 -----------------SMVVESGGLDFIVDMVKKG------LKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVD  512 (685)
Q Consensus       456 -----------------~~i~~~g~i~~Lv~lL~~~------~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~  512 (685)
                                       ....-...++.+...+...      .....+..|..++..++..... ..+   ...++.+..
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~-~~~---~~l~~~i~~  372 (458)
T d1ibrb_         297 SEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIV---PHVLPFIKE  372 (458)
T ss_dssp             CCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THH---HHHHHHHHH
T ss_pred             hhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccH-hhh---hHHHHHHHH
Confidence                             0011122344444544321      1234677788888777643321 111   225667777


Q ss_pred             HhccCCHHHHHHHHHHHHHhcCCCC-cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 039015          513 MVRDGTDRSKKNALVAIFGLLMHSG-NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE  576 (685)
Q Consensus       513 lL~~~~~~~~~~A~~aL~nLs~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~  576 (685)
                      .+.+++...+..|+.+|..++.... ....-.-..+++.++..+ .++++.++..|+.+|..++.
T Consensus       373 ~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l-~d~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         373 HIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM-KDPSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             HTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHH
Confidence            8888889999999999999985432 111112234788899999 67889999999999999875

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.022  Score=63.51  Aligned_cols=239  Identities=15%  Similarity=0.143  Sum_probs=135.2

Q ss_pred             CCHHHHHHhhcC--CCHHHHHHHHHHhhccccCcc-hhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHH
Q 039015          421 GCIPSLLKLLSS--KDSSTQENAIAALLNLSKHCK-SKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYR  497 (685)
Q Consensus       421 G~ip~Lv~lL~s--~~~~~~~~A~~aL~nLs~~~~-~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~  497 (685)
                      ..++.+..++..  ++..+++.++.++..++..-. +-... -...++.++..|++..+++++..|+.++..++......
T Consensus       606 ~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~-l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~  684 (876)
T d1qgra_         606 VVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKY-MEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSN  684 (876)
T ss_dssp             HHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGG-HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHh
Confidence            345666676654  456788888888887764321 11111 13467788888877656889999998888776533221


Q ss_pred             HHhhcCCCcHHHHHHHhccCC--HHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhc----c---CCChh------
Q 039015          498 KLIGENPEAIPALVDMVRDGT--DRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLT----S---SDSEE------  562 (685)
Q Consensus       498 ~~i~~~~g~i~~Lv~lL~~~~--~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~----~---~~~~~------  562 (685)
                      ..-.. ...++.++..+.+++  ...+..++.++..++..-+..  +  ...++.++..|.    .   ..+.+      
T Consensus       685 ~~~~~-~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~--~--~~yl~~~l~~l~~~~~~~~~~~~~~~~~~~~  759 (876)
T d1qgra_         685 IIPFC-DEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGE--F--KKYLEVVLNTLQQASQAQVDKSDYDMVDYLN  759 (876)
T ss_dssp             GHHHH-HHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGG--G--GGGHHHHHHHHHHHHTCCCCTTCHHHHHHHH
T ss_pred             hhhhH-HHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHh--h--HHHHHHHHHHHHHHHhcccCccchhHHHHHH
Confidence            11111 347888999887653  567888888888776332110  0  112334444332    1   11222      


Q ss_pred             -HHHHHHHHHHHH----hcChhc-HHHHHhc-CChHHHHHHhh-----cCCChhHHHHHHHHHHHHhccCcHHHHHHHHh
Q 039015          563 -LITDSLAVLATL----AEKLDG-TIAILHH-GALDMIMKILD-----SCTSRAGKEYCVSLLLALCINGGANVVALLVK  630 (685)
Q Consensus       563 -~~~~al~~L~~L----a~~~~~-~~~i~~~-g~v~~Lv~lL~-----~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~  630 (685)
                       +++.++.+...+    ...... ...+..- .-++.++.++.     .+.+......|+.+|..|+..-|......+..
T Consensus       760 ~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~  839 (876)
T d1qgra_         760 ELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEA  839 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             223333332222    111110 0000000 01234444322     12367788899999999987555566666554


Q ss_pred             cCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc
Q 039015          631 SPSLMGSLYSLLSQGSSRASKKASALIRILHEFYE  665 (685)
Q Consensus       631 ~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~  665 (685)
                      .+.+.+.|.....+.++..|..|.|+.+.+.+..+
T Consensus       840 ~~~v~~ll~~~~~s~~~~~~~~a~~~~~~~~~~~~  874 (876)
T d1qgra_         840 RPMIHELLTEGRRSKTNKAKTLARWATKELRKLKN  874 (876)
T ss_dssp             SHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc
Confidence            34455667777788889999999999999887643

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=1.4  Score=42.37  Aligned_cols=220  Identities=18%  Similarity=0.147  Sum_probs=163.5

Q ss_pred             HHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcch-h----HHHHh-cCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 039015          416 CLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS-K----SMVVE-SGGLDFIVDMVKKGLKVEARQHAAATLFY  489 (685)
Q Consensus       416 ~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k----~~i~~-~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~  489 (685)
                      .+...+.+..|+..|..-+-+.+..++.+..+|-....+ +    +.+.+ ...+..|+.--.   +++.-..+-..|..
T Consensus        64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye---~~eiAl~~G~mLRE  140 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLRE  140 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC---CcchhhhhhHHHHH
Confidence            355678899999999998999999999999999766533 3    33443 333444443333   56788888899999


Q ss_pred             hcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC-CCCcHHHHHhcC---ChHHHHHHhccCCChhHHH
Q 039015          490 IASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM-HSGNHWRFLAAG---AVPLLLNLLTSSDSEELIT  565 (685)
Q Consensus       490 Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~~G---~v~~Lv~lL~~~~~~~~~~  565 (685)
                      ...++.....|.. ...+..+++.++.++-++-.+|..++..|-. +...........   .+...-++| .+++=-.+.
T Consensus       141 cik~e~lak~iL~-s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL-~s~NYVtrR  218 (330)
T d1upka_         141 CIRHEPLAKIILW-SEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLL-HSENYVTKR  218 (330)
T ss_dssp             HHTSHHHHHHHHH-SGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHT-TCSSHHHHH
T ss_pred             HHhhHHHHHHHHc-cHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHh-cCCchHHHH
Confidence            9999988888887 7778889999999999999999999888765 434445555543   345566777 566777889


Q ss_pred             HHHHHHHHHhcChhcHHHH---HhcCC-hHHHHHHhhcCCChhHHHHHHHHHHHHhccC--cHHHHHHHHhcCCcHHHHH
Q 039015          566 DSLAVLATLAEKLDGTIAI---LHHGA-LDMIMKILDSCTSRAGKEYCVSLLLALCING--GANVVALLVKSPSLMGSLY  639 (685)
Q Consensus       566 ~al~~L~~La~~~~~~~~i---~~~g~-v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~--~~~~~~~l~~~~g~i~~L~  639 (685)
                      .++.+|..+-.+..+...+   +..+. +..++.+|++. +..++-.|.-+.--...+.  ++.+...+.. .  -..|+
T Consensus       219 qSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~-sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~-N--r~kLl  294 (330)
T d1upka_         219 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDILLK-N--QAKLI  294 (330)
T ss_dssp             HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHH-T--HHHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCc-hhhHHHHhhhHhhhhhcCCCCCHHHHHHHHH-h--HHHHH
Confidence            9999999999888877764   33333 88889999998 9999999999887777654  3677777776 3  44555


Q ss_pred             HHHhc
Q 039015          640 SLLSQ  644 (685)
Q Consensus       640 ~Ll~~  644 (685)
                      .++.+
T Consensus       295 ~fl~~  299 (330)
T d1upka_         295 EFLSK  299 (330)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            55543

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.3  Score=47.35  Aligned_cols=222  Identities=16%  Similarity=0.120  Sum_probs=161.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhh--CCHHHHHHhhcC-CCHHHHHHHHHHhhccccCcchhH
Q 039015          380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEV--GCIPSLLKLLSS-KDSSTQENAIAALLNLSKHCKSKS  456 (685)
Q Consensus       380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~--G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~k~  456 (685)
                      .+..|+..|..-+-+.|..++.....+-+.....|...++.  .--..|..++.. +++++...+-.+|.....++.-..
T Consensus        70 ~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~G~mLREcik~e~lak  149 (330)
T d1upka_          70 LLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAK  149 (330)
T ss_dssp             HHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHHH
T ss_pred             hHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhhhHHHHHHHhhHHHHH
Confidence            46777888888888999999988888888777777543321  111222233322 578888888899999999999888


Q ss_pred             HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-chhHHHHh-hcC-CCcHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 039015          457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIAS-IEEYRKLI-GEN-PEAIPALVDMVRDGTDRSKKNALVAIFGLL  533 (685)
Q Consensus       457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~~~i-~~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs  533 (685)
                      .|.....+..+......+ +-++...|.+++..|-. +....... ..+ ...+...-.+|.+++.-++..++..|..+-
T Consensus       150 ~iL~s~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLgelL  228 (330)
T d1upka_         150 IILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELL  228 (330)
T ss_dssp             HHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            888888899999999999 99999999999987743 43333332 221 135667778999999999999999999999


Q ss_pred             CCCCcHHHHHhc----CChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHH
Q 039015          534 MHSGNHWRFLAA----GAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYC  609 (685)
Q Consensus       534 ~~~~n~~~iv~~----G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a  609 (685)
                      .+..|...|...    .-+..+|.+| .+.+..++-+|..++-....+|.-         -+.++.+|...     ++.-
T Consensus       229 ldr~N~~vm~~Yvs~~~nLkl~M~LL-rd~sk~Iq~EAFhVFKvFVANpnK---------p~~I~~IL~~N-----r~kL  293 (330)
T d1upka_         229 LDRHNFTIMTKYISKPENLKLMMNLL-RDKSRNIQFEAFHVFKVFVANPNK---------TQPILDILLKN-----QAKL  293 (330)
T ss_dssp             HSGGGHHHHHHHTTCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHCSSC---------CHHHHHHHHHT-----HHHH
T ss_pred             hhhhHHHHHHHHhCCHHHHHHHHHHh-cCchhhHHHHhhhHhhhhhcCCCC---------CHHHHHHHHHh-----HHHH
Confidence            999988877542    3467788888 678889999999988877665442         33344444432     5555


Q ss_pred             HHHHHHHh
Q 039015          610 VSLLLALC  617 (685)
Q Consensus       610 ~~~L~~L~  617 (685)
                      +..|...-
T Consensus       294 l~fl~~f~  301 (330)
T d1upka_         294 IEFLSKFQ  301 (330)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHhCC
Confidence            55555543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.98  E-value=0.02  Score=54.17  Aligned_cols=85  Identities=15%  Similarity=0.130  Sum_probs=44.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHh-----hccccCcch--hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh
Q 039015          423 IPSLLKLLSSKDSSTQENAIAAL-----LNLSKHCKS--KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE  495 (685)
Q Consensus       423 ip~Lv~lL~s~~~~~~~~A~~aL-----~nLs~~~~~--k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~  495 (685)
                      +..|..+++++++.++..|+..|     ..|..+++.  |...+..-..+.|..++..+ +..+|..++..         
T Consensus        68 ~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~-d~~VR~~aa~~---------  137 (233)
T d1lrva_          68 VEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADR-DYLVRAYVVQR---------  137 (233)
T ss_dssp             GGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCS-SHHHHHHHHHH---------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCC-CHHHHHHHHhc---------
Confidence            55666777777777777776543     233333322  22333322344455555555 66666555432         


Q ss_pred             HHHHhhcCCCcHHHHHHHhccCCHHHHHHHH
Q 039015          496 YRKLIGENPEAIPALVDMVRDGTDRSKKNAL  526 (685)
Q Consensus       496 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~  526 (685)
                               ...+.|..+++++++.++..++
T Consensus       138 ---------~~~~~L~~L~~D~d~~VR~~aA  159 (233)
T d1lrva_         138 ---------IPPGRLFRFMRDEDRQVRKLVA  159 (233)
T ss_dssp             ---------SCGGGGGGTTTCSCHHHHHHHH
T ss_pred             ---------cchhHHHHHhcCCCHHHHHHHH
Confidence                     1233444555566666665544

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.45  E-value=0.018  Score=54.46  Aligned_cols=63  Identities=13%  Similarity=0.179  Sum_probs=33.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHH-----hhccccCcch--hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHH
Q 039015          423 IPSLLKLLSSKDSSTQENAIAA-----LLNLSKHCKS--KSMVVESGGLDFIVDMVKKGLKVEARQHAAAT  486 (685)
Q Consensus       423 ip~Lv~lL~s~~~~~~~~A~~a-----L~nLs~~~~~--k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~  486 (685)
                      .+.|..++.+++..++..++..     |..|..+++.  |..++..-+.+.+..+++.. +..+|..++..
T Consensus       116 ~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~-d~~VR~~aa~~  185 (233)
T d1lrva_         116 LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDP-EPEVRRIVASR  185 (233)
T ss_dssp             TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCS-SHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCC-CHHHHHHHHHh
Confidence            4556666666666666666543     2333333322  44444434445555555555 66666666543

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.09  E-value=2.2  Score=41.82  Aligned_cols=178  Identities=18%  Similarity=0.176  Sum_probs=113.6

Q ss_pred             HHHhcCCCHHH-HHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC-----------CCHHHHHHHHHHhhccccCc
Q 039015          385 SDRLLEGTSEE-KNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS-----------KDSSTQENAIAALLNLSKHC  452 (685)
Q Consensus       385 v~~L~s~~~~~-~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s-----------~~~~~~~~A~~aL~nLs~~~  452 (685)
                      +..|.++..+. ....+.-|+.--+.++-.+..-..++|+..|+.+|..           .+...+-.++.+|..+-.+.
T Consensus         8 v~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~   87 (343)
T d2bnxa1           8 IQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNK   87 (343)
T ss_dssp             HHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSH
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHHHhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccH
Confidence            45555543322 2333444443344444333222246678888887742           13557778889998888888


Q ss_pred             chhHHHH-hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch---h----------HHHHhhcCCCcHHHHHHHhccCC
Q 039015          453 KSKSMVV-ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE---E----------YRKLIGENPEAIPALVDMVRDGT  518 (685)
Q Consensus       453 ~~k~~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~---~----------~~~~i~~~~g~i~~Lv~lL~~~~  518 (685)
                      .+...++ ..+++..|+..|.+. ...++..|+.+|..++...   +          .....++ .+-+.++++.+++++
T Consensus        88 ~G~~~vl~~~~~i~~l~~~L~s~-~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e-~~RF~~lv~~l~~~~  165 (343)
T d2bnxa1          88 FGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE-VERFQPLLDGLKSGT  165 (343)
T ss_dssp             HHHHHHHHSSSHHHHHHHTCCTT-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHT-SCTTHHHHHHTSTTS
T ss_pred             HHHHHHHcChHHHHHHHHccCCC-chHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcC-CCcHHHHHHHHhccc
Confidence            8877766 578999999999988 8999999999998887532   1          1223344 677899999988764


Q ss_pred             -HHHHHHHHHHHHHhcCCCC-------cHHHHHhcCChHHHHHHhccCCChhHHH
Q 039015          519 -DRSKKNALVAIFGLLMHSG-------NHWRFLAAGAVPLLLNLLTSSDSEELIT  565 (685)
Q Consensus       519 -~~~~~~A~~aL~nLs~~~~-------n~~~iv~~G~v~~Lv~lL~~~~~~~~~~  565 (685)
                       .+.+..++..+-.|....+       .|..+..+|..+ ++.-|....++.+..
T Consensus       166 ~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~-il~~l~~~~~~~L~~  219 (343)
T d2bnxa1         166 SIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQ-VLQELREIENEDMKV  219 (343)
T ss_dssp             CHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHH-HHHHHTTCCCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHH-HHHHHHccCChHHHH
Confidence             5666666666666665544       255567777554 455554445554443

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.99  E-value=11  Score=36.56  Aligned_cols=146  Identities=17%  Similarity=0.134  Sum_probs=101.8

Q ss_pred             hcCcHHHHHHHhc----CC------CCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHH
Q 039015          460 ESGGLDFIVDMVK----KG------LKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAI  529 (685)
Q Consensus       460 ~~g~i~~Lv~lL~----~~------~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL  529 (685)
                      ..+|+..|+.+|.    ++      .+......+...|..|..+......+...++++..|+..|.+..+.+++.|+..|
T Consensus        43 ~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL  122 (343)
T d2bnxa1          43 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL  122 (343)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHH
Confidence            4667888888773    11      1244566788889888888877777777689999999999998999999999999


Q ss_pred             HHhcCCCC---cHHHH----------HhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhc-------HHHHHhcCC
Q 039015          530 FGLLMHSG---NHWRF----------LAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDG-------TIAILHHGA  589 (685)
Q Consensus       530 ~nLs~~~~---n~~~i----------v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~-------~~~i~~~g~  589 (685)
                      ..+|...+   +...+          -+.+-..++++.|....+.+.+..++..+-.|..+++.       |.++... |
T Consensus       123 ~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~-G  201 (343)
T d2bnxa1         123 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRL-G  201 (343)
T ss_dssp             HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHT-T
T ss_pred             HHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHC-C
Confidence            99996532   33333          33456788898886666677777777777777665433       3334554 5


Q ss_pred             hHHHHHHhhcCCChhHH
Q 039015          590 LDMIMKILDSCTSRAGK  606 (685)
Q Consensus       590 v~~Lv~lL~~~~s~~~~  606 (685)
                      +..++.-|+...++...
T Consensus       202 l~~il~~l~~~~~~~L~  218 (343)
T d2bnxa1         202 LHQVLQELREIENEDMK  218 (343)
T ss_dssp             HHHHHHHHTTCCCHHHH
T ss_pred             hHHHHHHHHccCChHHH
Confidence            66666656654354443

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.28  E-value=1.7  Score=32.85  Aligned_cols=50  Identities=22%  Similarity=0.288  Sum_probs=38.1

Q ss_pred             CCCCccCcCccccCC-----Cceec--cCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015          277 TPDDFTCPISLEIMK-----DPVTL--STGHTYDRASILKWFRAGNSTCPKTGERLQ  326 (685)
Q Consensus       277 ~~~~~~CpIc~~~m~-----dPv~~--~cghtfcr~ci~~~~~~~~~~CP~c~~~l~  326 (685)
                      --..-.|.||.+-.-     +|.+.  .|+...||.|++-=.++|+..||.|+.+..
T Consensus        13 ~~~~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Yk   69 (93)
T d1weoa_          13 NLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK   69 (93)
T ss_dssp             CCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred             hcccchhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhccCccCcccCChhh
Confidence            344578999997654     33222  488889999998878889999999988764