Citrus Sinensis ID: 039018

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
Protein Sequence
PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSIH
Secondary Structure (PSIPRED)
cccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccHHHHHcccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHcccccccEEEcccccccccccHHHHcccccccHHHccccEEEEEEccccccccccHHHcccccccEEEcccccccccccHHHccccHHHccccccEEEEcccccccccccHHHccccccccccHHcccccccEEEcccccccccccHHHHHHcccccEEEccccccccccccccc
Coil and Loop (DISEMBL)
pipngpenlsslryldlsdnqfnstIPEWISRINCtissglgnltslkhsisynvlegklptsfgrlreprsislSWANKSQEILEIFHSfsrdnwtlRSLQILDIACNnlsgaipacisnssarkevGYTSILNLLRITdrsknnfsgvlpaELVTDLVALRSLNLFHNHfkekfpgsih
Flexible Loop (DISEMBL)
pipngpenLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEgklptsfgrlrEPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACisnssarkeVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHnhfkekfpgsih
Low Complexity Region (SEG)
PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSIH
Disordered region (IsUnstruct)
************RYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK********
Disordered Region (DISOPRED)
PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGS**
Disordered Region (DISEMBL)
PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSIH
Disordered Region (DISPRO)
PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSIH
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSIH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	181	2.2.26 [Sep-21-2011]
C0LGT6	1031	LRR receptor-like serine/	yes	no	0.790	0.138	0.302	4e-10
Q9LRT1	1016	Probably inactive leucine	no	no	0.867	0.154	0.289	8e-10
P47735	999	Receptor-like protein kin	no	no	0.850	0.154	0.340	8e-10
Q9FL28	1173	LRR receptor-like serine/	no	no	0.939	0.144	0.304	1e-09
Q9C9H7	847	Receptor-like protein 12	no	no	0.861	0.184	0.348	2e-09
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.883	0.134	0.316	4e-09
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.872	0.138	0.330	1e-08
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.861	0.141	0.305	3e-08
C0LGP4	1010	Probable LRR receptor-lik	no	no	0.883	0.158	0.300	3e-08
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.817	0.123	0.335	4e-08

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score = 64.3 bits (155), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 32/175 (18%)

Query: 8   NLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGR 66
           NLS LR L+L+DN F STIP+ + R           L  L++ ++SYN+LEG++P+S   
Sbjct: 95  NLSFLRLLNLADNSFGSTIPQKVGR-----------LFRLQYLNMSYNLLEGRIPSSLSN 143

Query: 67  LREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARK 126
                ++ LS  +       + H    +  +L  L ILD++ NNL+G  PA + N     
Sbjct: 144 CSRLSTVDLSSNH-------LGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGN----- 191

Query: 127 EVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSIH 181
                  L  L+  D + N   G +P E V  L  +    +  N F   FP +++
Sbjct: 192 -------LTSLQKLDFAYNQMRGEIPDE-VARLTQMVFFQIALNSFSGGFPPALY 238

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 83/197 (42%), Gaps = 40/197 (20%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKL 60
           +P   + L SL + D+S+N  +   P WI           G++T L H   S N L GKL
Sbjct: 287 LPRTLQKLKSLNHFDVSNNLLSGDFPPWI-----------GDMTGLVHLDFSSNELTGKL 335

Query: 61  PTSFGRLREPRSISLSWANKSQEILEIFHSFSR----------------DNWTLRSLQIL 104
           P+S   LR  + ++LS    S E+ E   S                   D +    LQ +
Sbjct: 336 PSSISNLRSLKDLNLSENKLSGEVPESLESCKELMIVQLKGNDFSGNIPDGFFDLGLQEM 395

Query: 105 DIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRS 164
           D + N L+G+IP            G + +   L   D S N+ +G +P E V   + +R 
Sbjct: 396 DFSGNGLTGSIPR-----------GSSRLFESLIRLDLSHNSLTGSIPGE-VGLFIHMRY 443

Query: 165 LNLFHNHFKEKFPGSIH 181
           LNL  NHF  + P  I 
Sbjct: 444 LNLSWNHFNTRVPPEIE 460

Arabidopsis thaliana (taxid: 3702)

>sp|P47735|RLK5_ARATH Receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=RLK5 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 83/191 (43%), Gaps = 37/191 (19%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLP 61
           IP+G   L  L  L+LSDN F  +IP+ I         G  NL++L+  IS N   G +P
Sbjct: 419 IPHGFWGLPRLSLLELSDNSFTGSIPKTI--------IGAKNLSNLR--ISKNRFSGSIP 468

Query: 62  TSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIP----- 116
              G L     IS +  + S EI E           L+ L  LD++ N LSG IP     
Sbjct: 469 NEIGSLNGIIEISGAENDFSGEIPESL-------VKLKQLSRLDLSKNQLSGEIPRELRG 521

Query: 117 ----------ACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLN 166
                         +    KEVG   +LN L   D S N FSG +P EL    + L  LN
Sbjct: 522 WKNLNELNLANNHLSGEIPKEVGILPVLNYL---DLSSNQFSGEIPLELQN--LKLNVLN 576

Query: 167 LFHNHFKEKFP 177
           L +NH   K P
Sbjct: 577 LSYNHLSGKIP 587

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates that controls floral organ abscission. May interact with the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) ligands family.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 93/207 (44%), Gaps = 37/207 (17%)

Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCT-ISSG--------------LGNLT 45
           PIP+   N + L+ LDLS NQ    IP    R+N T IS G                NL 
Sbjct: 399 PIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLE 458

Query: 46  SLKHSISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILD 105
           +L  S++ N L G L    G+L++ R + +S+ + +  I        R+   L+ L IL 
Sbjct: 459 TL--SVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPI-------PREIGNLKDLNILY 509

Query: 106 IACNNLSGAIPACISNSSARKEVGYTS------------ILNLLRITDRSKNNFSGVLPA 153
           +  N  +G IP  +SN +  + +   S             + LL + D S N FSG +PA
Sbjct: 510 LHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPA 569

Query: 154 ELVTDLVALRSLNLFHNHFKEKFPGSI 180
            L + L +L  L+L  N F    P S+
Sbjct: 570 -LFSKLESLTYLSLQGNKFNGSIPASL 595

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 62.4 bits (150), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/195 (34%), Positives = 87/195 (44%), Gaps = 39/195 (20%)

Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGK 59
           PIP     L +L  LD+S N F   IP  IS+           L +L H  +S N LEG+
Sbjct: 366 PIPESISRLLNLEELDISHNNFTGAIPPTISK-----------LVNLLHLDLSKNNLEGE 414

Query: 60  LPTSFGRLR----EPRSISLSWANKSQEILEIFHSFSRDN----------WTLRSLQILD 105
           +P    RL        S S S+ N SQE   I       N            L SL  LD
Sbjct: 415 VPACLWRLNTMVLSHNSFS-SFENTSQEEALIEELDLNSNSFQGPIPYMICKLSSLGFLD 473

Query: 106 IACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSL 165
           ++ N  SG+IP+CI N S     G    LNL        NNFSG LP ++ +    L SL
Sbjct: 474 LSNNLFSGSIPSCIRNFS-----GSIKELNL------GDNNFSGTLP-DIFSKATELVSL 521

Query: 166 NLFHNHFKEKFPGSI 180
           ++ HN  + KFP S+
Sbjct: 522 DVSHNQLEGKFPKSL 536

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score = 60.8 bits (146), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 85/180 (47%), Gaps = 20/180 (11%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLK-HSISYNVLEGKL 60
           +P    N +SL+ L LSDNQ    IP  I           G LTSL   +++ N+ +GK+
Sbjct: 464 LPAEIGNAASLKRLVLSDNQLTGEIPREI-----------GKLTSLSVLNLNANMFQGKI 512

Query: 61  PTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACIS 120
           P   G      ++ L   N   +I +   + ++       LQ L ++ NNLSG+IP+  S
Sbjct: 513 PVELGDCTSLTTLDLGSNNLQGQIPDKITALAQ-------LQCLVLSYNNLSGSIPSKPS 565

Query: 121 NSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180
               + E+   S L    I D S N  SG +P EL   LV L  ++L +NH   + P S+
Sbjct: 566 AYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLV-LVEISLSNNHLSGEIPASL 624

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 91/203 (44%), Gaps = 45/203 (22%)

Query: 11  SLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFGRLREP 70
           S+ YLD S N  +  I +  S INCT      NL SL  ++SYN  +G++P SFG L+  
Sbjct: 205 SMTYLDFSGNSISGYISD--SLINCT------NLKSL--NLSYNNFDGQIPKSFGELKLL 254

Query: 71  RSISLS------WANKSQEILEIFHSF-----SRDNWT------LRS---LQILDIACNN 110
           +S+ LS      W     EI +   S      S +N+T      L S   LQ LD++ NN
Sbjct: 255 QSLDLSHNRLTGWI--PPEIGDTCRSLQNLRLSYNNFTGVIPESLSSCSWLQSLDLSNNN 312

Query: 111 LSGAIPACISNSSARKEV-------------GYTSILNLLRITDRSKNNFSGVLPAELVT 157
           +SG  P  I  S    ++                S    LRI D S N FSGV+P +L  
Sbjct: 313 ISGPFPNTILRSFGSLQILLLSNNLISGDFPTSISACKSLRIADFSSNRFSGVIPPDLCP 372

Query: 158 DLVALRSLNLFHNHFKEKFPGSI 180
              +L  L L  N    + P +I
Sbjct: 373 GAASLEELRLPDNLVTGEIPPAI 395

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 86/190 (45%), Gaps = 34/190 (17%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWIS-------------RINCTISSGLGNLTSLK 48
           IP    N SSL  L L++NQF+  IP  I              RI+ ++   +GNL SL 
Sbjct: 113 IPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRISGSLPVEIGNLLSLS 172

Query: 49  HSISY-NVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIA 107
             ++Y N + G+LP S G L+      L+     Q +  I  S   +     SL +L +A
Sbjct: 173 QLVTYSNNISGQLPRSIGNLKR-----LTSFRAGQNM--ISGSLPSEIGGCESLVMLGLA 225

Query: 108 CNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNL 167
            N LSG +P         KE+G   +L  L      +N FSG +P E +++  +L +L L
Sbjct: 226 QNQLSGELP---------KEIG---MLKKLSQVILWENEFSGFIPRE-ISNCTSLETLAL 272

Query: 168 FHNHFKEKFP 177
           + N      P
Sbjct: 273 YKNQLVGPIP 282

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 80/193 (41%), Gaps = 33/193 (17%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWI-------------SRINCTISSGLGNLTSLK 48
           IP     LS L YLD+  N     IP  +             +R+  ++ S LG+LT+L 
Sbjct: 106 IPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLNLRLDSNRLGGSVPSELGSLTNLV 165

Query: 49  HSISY-NVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIA 107
               Y N + GKLPTS G L     ++LS  N   EI         D   L  +  L + 
Sbjct: 166 QLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEI-------PSDVAQLTQIWSLQLV 218

Query: 108 CNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNL 167
            NN SG  P  + N S+ K +G               N+FSG L  +L   L  L S N+
Sbjct: 219 ANNFSGVFPPALYNLSSLKLLGI------------GYNHFSGRLRPDLGILLPNLLSFNM 266

Query: 168 FHNHFKEKFPGSI 180
             N+F    P ++
Sbjct: 267 GGNYFTGSIPTTL 279

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 87/179 (48%), Gaps = 31/179 (17%)

Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKL 60
           PIP  P  L SL+YL L++N+F   IP+++S   C   +GL         +S N   G +
Sbjct: 284 PIP--PLPLKSLQYLSLAENKFTGEIPDFLSGA-CDTLTGL--------DLSGNHFYGAV 332

Query: 61  PTSFGRLREPRSISLSWANKSQEI-LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI 119
           P  FG      S++LS  N S E+ ++           +R L++LD++ N  SG +P  +
Sbjct: 333 PPFFGSCSLLESLALSSNNFSGELPMDTL-------LKMRGLKVLDLSFNEFSGELPESL 385

Query: 120 SNSSARKEVGYTSILNLLRITDRSKNNFSG-VLPAELVTDLVALRSLNLFHNHFKEKFP 177
           +N SA       S+L L    D S NNFSG +LP         L+ L L +N F  K P
Sbjct: 386 TNLSA-------SLLTL----DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 433

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
449457767	987	PREDICTED: receptor-like protein kinase	0.933	0.171	0.333	1e-14
449511652	1000	PREDICTED: receptor-like protein kinase	0.933	0.169	0.333	1e-14
134142354	1001	LRR receptor-like protein kinase m3 [Mal	0.939	0.169	0.334	3e-13
134142356	998	LRR receptor-like protein kinase m4 [Mal	0.939	0.170	0.334	4e-13
134142352	998	LRR receptor-like protein kinase m2 [Mal	0.939	0.170	0.334	4e-13
356519617	1007	PREDICTED: receptor-like protein kinase	0.939	0.168	0.302	8e-13
47498987	987	leucine-rich repeat receptor-like protei	0.939	0.172	0.310	3e-12
2586087	813	receptor kinase-like protein [Oryza sati	0.850	0.189	0.336	3e-12
297728489	998	Os11g0559200 [Oryza sativa Japonica Grou	0.850	0.154	0.336	4e-12
218185938	495	hypothetical protein OsI_36500 [Oryza sa	0.850	0.311	0.336	4e-12

>gi|449457767|ref|XP_004146619.1| PREDICTED: receptor-like protein kinase HSL1-like [Cucumis sativus]

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 105/207 (50%), Gaps = 38/207 (18%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTISSGLGNLTSLK 48
           +P    +L +LRYLDL+ N F+  IPE  +R             ++  + + LGN+TSLK
Sbjct: 134 LPASISDLPNLRYLDLTGNNFSGDIPESFARFQKLEVLSLVYNLLDGPMPAFLGNITSLK 193

Query: 49  H-SISYNVLE-GKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDI 106
             ++SYN  E  ++PT FG L    ++ + W  +   + EI  S  R    L+ L  LD+
Sbjct: 194 MLNLSYNPFEPSRIPTEFGNL---MNLEVLWLTQCNLVGEIPESLGR----LKRLTDLDL 246

Query: 107 ACNNLSGAIPACISNSSARKEV-------------GYTSILNLLRITDRSKNNFSGVLPA 153
           A NNL G+IP  +   S+  ++             G+++ L  LR+ D S N  +GV+P 
Sbjct: 247 AFNNLDGSIPKSLMELSSVVQIELYNNSLTGELPSGFSN-LTSLRLFDASMNGLTGVIPD 305

Query: 154 ELVTDLVALRSLNLFHNHFKEKFPGSI 180
           EL    + L SLNL+ N  + K P SI
Sbjct: 306 ELCQ--LPLESLNLYENKLEGKLPESI 330

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511652|ref|XP_004164018.1| PREDICTED: receptor-like protein kinase HSL1-like [Cucumis sativus]

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 105/207 (50%), Gaps = 38/207 (18%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTISSGLGNLTSLK 48
           +P    +L +LRYLDL+ N F+  IPE  +R             ++  + + LGN+TSLK
Sbjct: 134 LPASISDLPNLRYLDLTGNNFSGDIPESFARFQKLEVLSLVYNLLDGPMPAFLGNITSLK 193

Query: 49  H-SISYNVLE-GKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDI 106
             ++SYN  E  ++PT FG L    ++ + W  +   + EI  S  R    L+ L  LD+
Sbjct: 194 MLNLSYNPFEPSRIPTEFGNL---MNLEVLWLTQCNLVGEIPESLGR----LKRLTDLDL 246

Query: 107 ACNNLSGAIPACISNSSARKEV-------------GYTSILNLLRITDRSKNNFSGVLPA 153
           A NNL G+IP  +   S+  ++             G+++ L  LR+ D S N  +GV+P 
Sbjct: 247 AFNNLDGSIPKSLMELSSVVQIELYNNSLTGELPSGFSN-LTSLRLFDASMNGLTGVIPD 305

Query: 154 ELVTDLVALRSLNLFHNHFKEKFPGSI 180
           EL    + L SLNL+ N  + K P SI
Sbjct: 306 ELCQ--LPLESLNLYENKLEGKLPESI 330

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|134142354|gb|ABO61513.1| LRR receptor-like protein kinase m3 [Malus x domestica]

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 100/206 (48%), Gaps = 36/206 (17%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTISSGLGNLTSLK 48
           +P    +L +L+YLDL+ N F+  IP+   R             I  TI   LGN+++LK
Sbjct: 132 LPATLPDLPNLKYLDLTGNNFSGPIPDSFGRFQKLEVLSLVYNLIEGTIPPFLGNISTLK 191

Query: 49  H-SISYN-VLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDI 106
             ++SYN  L G++P   G L    ++ + W  +   + EI  S  R    L++L+ LD+
Sbjct: 192 MLNLSYNPFLPGRIPAELGNL---TNLEVLWLTECNIVGEIPDSLGR----LKNLKDLDL 244

Query: 107 ACNNLSGAIPACIS------------NSSARKEVGYTSILNLLRITDRSKNNFSGVLPAE 154
           A N L+G IP  +S            NS   K     S L  LR+ D S N  SG +P E
Sbjct: 245 AINGLTGRIPPSLSELTSVVQIELYNNSLTGKLPPGMSKLTRLRLLDASMNQLSGQIPDE 304

Query: 155 LVTDLVALRSLNLFHNHFKEKFPGSI 180
           L    + L SLNL+ N+F+   P SI
Sbjct: 305 LCR--LPLESLNLYENNFEGSVPASI 328

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|134142356|gb|ABO61514.1| LRR receptor-like protein kinase m4 [Malus x domestica]

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 100/206 (48%), Gaps = 36/206 (17%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTISSGLGNLTSLK 48
           +P    +L +L+YLDL+ N F+  IP+   R             I  TI   LGN+++LK
Sbjct: 132 LPATLPDLPNLKYLDLTGNNFSGPIPDSFGRFQKLEVLSLVYNLIEGTIPPFLGNISTLK 191

Query: 49  H-SISYN-VLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDI 106
             ++SYN  L G++P   G L    ++ + W  +   + EI  S  R    L++L+ LD+
Sbjct: 192 MLNLSYNPFLPGRIPAELGNL---TNLEVLWLTECNIVGEIPDSLGR----LKNLKDLDL 244

Query: 107 ACNNLSGAIPACIS------------NSSARKEVGYTSILNLLRITDRSKNNFSGVLPAE 154
           A N L+G IP  +S            NS   K     S L  LR+ D S N  SG +P E
Sbjct: 245 AINGLTGRIPPSLSELTSVVQIELYNNSLTGKLPPGMSKLTRLRLLDASMNQLSGPIPDE 304

Query: 155 LVTDLVALRSLNLFHNHFKEKFPGSI 180
           L    + L SLNL+ N+F+   P SI
Sbjct: 305 LCR--LPLESLNLYENNFEGSVPASI 328

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|134142352|gb|ABO61512.1| LRR receptor-like protein kinase m2 [Malus x domestica]

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 100/206 (48%), Gaps = 36/206 (17%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTISSGLGNLTSLK 48
           +P    +L +L+YLDL+ N F+  IP+   R             I  TI   LGN+++LK
Sbjct: 132 LPATLPDLPNLKYLDLTGNNFSGPIPDSFGRFQKLEVLSLVYNLIEGTIPPFLGNISTLK 191

Query: 49  H-SISYN-VLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDI 106
             ++SYN  L G++P   G L    ++ + W  +   + EI  S  R    L++L+ LD+
Sbjct: 192 MLNLSYNPFLPGRIPAELGNL---TNLEVLWLTECNIVGEIPDSLGR----LKNLKDLDL 244

Query: 107 ACNNLSGAIPACIS------------NSSARKEVGYTSILNLLRITDRSKNNFSGVLPAE 154
           A N L+G IP  +S            NS   K     S L  LR+ D S N  SG +P E
Sbjct: 245 AINGLTGRIPPSLSELTSVVQIELYNNSLTGKLPPGMSKLTRLRLLDASMNQLSGPIPDE 304

Query: 155 LVTDLVALRSLNLFHNHFKEKFPGSI 180
           L    + L SLNL+ N+F+   P SI
Sbjct: 305 LCR--LPLESLNLYENNFEGSVPASI 328

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519617|ref|XP_003528467.1| PREDICTED: receptor-like protein kinase HSL1-like [Glycine max]

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 106/208 (50%), Gaps = 38/208 (18%)

Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTISSGLGNLTSL 47
           P+PN    L +L+YLDL+ N F+ +IP+                 +  TI + LGN+++L
Sbjct: 139 PLPNTLPQLVNLKYLDLTGNNFSGSIPDSFGTFQNLEVLSLVSNLLEGTIPASLGNVSTL 198

Query: 48  KH-SISYN-VLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILD 105
           K  ++SYN    G++P   G L    ++ + W  +   +  I  S  R    L  LQ LD
Sbjct: 199 KMLNLSYNPFFPGRIPPEIGNL---TNLEVLWLTQCNLVGVIPASLGR----LGRLQDLD 251

Query: 106 IACNNLSGAIPACISNSSARKEV-------------GYTSILNLLRITDRSKNNFSGVLP 152
           +A N+L G+IP+ ++  ++ +++             G  ++ N LR+ D S N+ +G +P
Sbjct: 252 LALNDLYGSIPSSLTELTSLRQIELYNNSLSGELPKGMGNLSN-LRLIDASMNHLTGSIP 310

Query: 153 AELVTDLVALRSLNLFHNHFKEKFPGSI 180
            EL +  + L SLNL+ N F+ + P SI
Sbjct: 311 EELCS--LPLESLNLYENRFEGELPASI 336

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|47498987|gb|AAT28309.1| leucine-rich repeat receptor-like protein kinase [Pyrus pyrifolia]

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 100/206 (48%), Gaps = 36/206 (17%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTISSGLGNLTSLK 48
           +P    ++ +L+YLDL+ N F+  IP+   R             I  TI   LGN+++LK
Sbjct: 121 LPATLSDVPNLKYLDLTGNNFSGPIPDSFGRFQKLEVLSLVYNLIESTIPPFLGNISTLK 180

Query: 49  H-SISYNVLE-GKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDI 106
             ++SYN    G++P   G L    ++ + W  +   + EI  S  R    L++L+ LD+
Sbjct: 181 MLNLSYNPFHPGRIPAELGNL---TNLEVLWLTECNLVGEIPDSLGR----LKNLKDLDL 233

Query: 107 ACNNLSGAIPACISNSSARKEVGY------------TSILNLLRITDRSKNNFSGVLPAE 154
           A N L+G IP  +S  ++  ++               S L  LR+ D S N  SG +P E
Sbjct: 234 AINGLTGRIPPSLSELTSVVQIELYNNSLTGELPPGMSKLTRLRLLDASMNQLSGPIPDE 293

Query: 155 LVTDLVALRSLNLFHNHFKEKFPGSI 180
           L    + L SLNL+ N+F+   P SI
Sbjct: 294 LCR--LPLESLNLYENNFEGSVPASI 317

Source: Pyrus pyrifolia

Species: Pyrus pyrifolia

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2586087|gb|AAB82756.1| receptor kinase-like protein [Oryza sativa Indica Group]

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 89/187 (47%), Gaps = 33/187 (17%)

Query: 8   NLSSLRYLDLSDNQFNSTIPEWISRIN-------------CTISSGLGNLTSLKH-SISY 53
           NLS LR L LSDN  +  IP+ +SR++               I + LGNLTSL    ++ 
Sbjct: 100 NLSFLRTLQLSDNHLSGKIPQELSRLSRLQQLVLNFNSLSGEIPAALGNLTSLSVLELTN 159

Query: 54  NVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSG 113
           N L G +P+S G+L     ++L+    S  I   F         LR L  L +A NNLSG
Sbjct: 160 NTLSGAIPSSLGKLTGLTDLALAENTLSGSIPSSF-------GQLRRLSFLSLAFNNLSG 212

Query: 114 AIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK 173
           AIP  I N S+            L I +   N  SG LP    ++L +L+ + +++N F 
Sbjct: 213 AIPDPIWNISS------------LTIFEVISNKLSGTLPTNAFSNLPSLQEVYMYYNQFH 260

Query: 174 EKFPGSI 180
            + P SI
Sbjct: 261 GRIPASI 267

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297728489|ref|NP_001176608.1| Os11g0559200 [Oryza sativa Japonica Group] gi|77551507|gb|ABA94304.1| Leucine Rich Repeat family protein [Oryza sativa Japonica Group] gi|125577526|gb|EAZ18748.1| hypothetical protein OsJ_34269 [Oryza sativa Japonica Group] gi|255680191|dbj|BAH95336.1| Os11g0559200 [Oryza sativa Japonica Group]

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 89/187 (47%), Gaps = 33/187 (17%)

Query: 8   NLSSLRYLDLSDNQFNSTIPEWISRI-------------NCTISSGLGNLTSLKH-SISY 53
           NLS LR L LSDN  +  IP+ +SR+             +  I + LGNLTSL    ++ 
Sbjct: 100 NLSFLRTLQLSDNHLSGKIPQELSRLIRLQQLVLNFNSLSGEIPAALGNLTSLSVLELTN 159

Query: 54  NVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSG 113
           N L G +P+S G+L     ++L+    S  I   F         LR L  L +A NNLSG
Sbjct: 160 NTLSGAIPSSLGKLTGLTDLALAENTLSGSIPSSF-------GQLRRLSFLSLAFNNLSG 212

Query: 114 AIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK 173
           AIP  I N S+            L I +   N  SG LP    ++L +L+ + +++N F 
Sbjct: 213 AIPDPIWNISS------------LTIFEVISNKLSGTLPTNAFSNLPSLQEVYMYYNQFH 260

Query: 174 EKFPGSI 180
            + P SI
Sbjct: 261 GRIPASI 267

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218185938|gb|EEC68365.1| hypothetical protein OsI_36500 [Oryza sativa Indica Group]

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 89/187 (47%), Gaps = 33/187 (17%)

Query: 8   NLSSLRYLDLSDNQFNSTIPEWISRIN-------------CTISSGLGNLTSLKH-SISY 53
           NLS LR L LSDN  +  IP+ +SR++               I + LGNLTSL    ++ 
Sbjct: 100 NLSFLRTLQLSDNHLSGKIPQELSRLSRLQQLVLNFNSLSGEIPAALGNLTSLSVLELTN 159

Query: 54  NVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSG 113
           N L G +P+S G+L     ++L+    S  I   F         LR L  L +A NNLSG
Sbjct: 160 NTLSGAIPSSLGKLTGLTDLALAENTLSGSIPSSFGQ-------LRRLSFLSLAFNNLSG 212

Query: 114 AIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK 173
           AIP  I N S+            L I +   N  SG LP    ++L +L+ + +++N F 
Sbjct: 213 AIPDPIWNISS------------LTIFEVISNKLSGTLPTNAFSNLPSLQEVYMYYNQFH 260

Query: 174 EKFPGSI 180
            + P SI
Sbjct: 261 GRIPASI 267

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.867	0.185	0.365	1.3e-11
TAIR|locus:2005540	999	HAE "HAESA" [Arabidopsis thali	0.856	0.155	0.336	5.6e-11
TAIR|locus:2091353	1016	AT3G28040 [Arabidopsis thalian	0.834	0.148	0.305	9.4e-11
TAIR|locus:2094563	595	RLP36 "receptor like protein 3	0.861	0.262	0.314	8.6e-10
TAIR|locus:2094613	784	RLP38 "receptor like protein 3	0.861	0.198	0.319	1.3e-09
TAIR|locus:2207036	977	AT1G72180 [Arabidopsis thalian	0.900	0.166	0.333	2.2e-09
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.850	0.151	0.301	2.3e-09
TAIR|locus:2098267	836	IMK2 "inflorescence meristem r	0.762	0.165	0.329	3.7e-09
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.856	0.171	0.291	6.8e-09
TAIR|locus:2154344	1135	AT5G48940 [Arabidopsis thalian	0.933	0.148	0.331	7e-09

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 71/194 (36%), Positives = 91/194 (46%)

Query:     1 PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKL 60
             PIP     L +L  LD+S N F   IP  IS+        L NL  L   +S N LEG++
Sbjct:   366 PIPESISRLLNLEELDISHNNFTGAIPPTISK--------LVNLLHL--DLSKNNLEGEV 415

Query:    61 PTSFGRLR----EPRSISLSWANKSQE---ILEI---FHSFSRDN----WTLRSLQILDI 106
             P    RL        S S S+ N SQE   I E+    +SF          L SL  LD+
Sbjct:   416 PACLWRLNTMVLSHNSFS-SFENTSQEEALIEELDLNSNSFQGPIPYMICKLSSLGFLDL 474

Query:   107 ACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLN 166
             + N  SG+IP+CI N S     G    LNL        NNFSG LP ++ +    L SL+
Sbjct:   475 SNNLFSGSIPSCIRNFS-----GSIKELNL------GDNNFSGTLP-DIFSKATELVSLD 522

Query:   167 LFHNHFKEKFPGSI 180
             + HN  + KFP S+
Sbjct:   523 VSHNQLEGKFPKSL 536

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2005540 HAE "HAESA" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 5.6e-11, P = 5.6e-11
 Identities = 64/190 (33%), Positives = 93/190 (48%)

Query:     2 IPNGPENLSSLRYLDLSDNQFNSTIPEWI-------------SRINCTISSGLGNLTSL- 47
             IP+G   L  L  L+LSDN F  +IP+ I             +R + +I + +G+L  + 
Sbjct:   419 IPHGFWGLPRLSLLELSDNSFTGSIPKTIIGAKNLSNLRISKNRFSGSIPNEIGSLNGII 478

Query:    48 KHSISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIA 107
             + S + N   G++P S  +L++   + LS   K+Q   EI        W  ++L  L++A
Sbjct:   479 EISGAENDFSGEIPESLVKLKQLSRLDLS---KNQLSGEIPRELR--GW--KNLNELNLA 531

Query:   108 CNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNL 167
              N+LSG IP         KEVG   +LN L   D S N FSG +P EL    + L  LNL
Sbjct:   532 NNHLSGEIP---------KEVGILPVLNYL---DLSSNQFSGEIPLELQN--LKLNVLNL 577

Query:   168 FHNHFKEKFP 177
              +NH   K P
Sbjct:   578 SYNHLSGKIP 587

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2091353 AT3G28040 [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 55/180 (30%), Positives = 94/180 (52%)

Query:     2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKL 60
             IP+   +++SL++LDL+ N F+ T+ + +   NC+         SL++ S+S+N LEG++
Sbjct:   140 IPSSLGSITSLQHLDLTGNSFSGTLSDDLFN-NCS---------SLRYLSLSHNHLEGQI 189

Query:    61 PTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACIS 120
             P++  R     S++LS    S        SF    W L  L+ LD++ N+LSG+IP    
Sbjct:   190 PSTLFRCSVLNSLNLSRNRFSGN-----PSFVSGIWRLERLRALDLSSNSLSGSIP---- 240

Query:   121 NSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180
                    +G  S+ NL  +    +N FSG LP+++      L  ++L  NHF  + P ++
Sbjct:   241 -------LGILSLHNLKEL-QLQRNQFSGALPSDIGL-CPHLNRVDLSSNHFSGELPRTL 291

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2094563 RLP36 "receptor like protein 36" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 8.6e-10, P = 8.6e-10
 Identities = 62/197 (31%), Positives = 93/197 (47%)

Query:     2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLP 61
             IP     L +L YLD+S N F   +P  IS++         NLTS+   +SYN LEG++P
Sbjct:   132 IPESISKLVNLEYLDVSHNNFGGQVPRSISKVV--------NLTSV--DLSYNKLEGQVP 181

Query:    62 TSFGRLREPRSISLSWAN-----KSQEILE-------IFHSFSRDN----WT--LRSLQI 103
                 R  +   + LS+ +     KS E+++          S S D     W   ++ L  
Sbjct:   182 DFVWRSSKLDYVDLSYNSFNCFAKSVEVIDGASLTMLNLGSNSVDGPFPKWICKVKDLYA 241

Query:   104 LDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALR 163
             LD++ N+ +G+IP C+  S+      Y   LNL        N+ SGVLP   + D   LR
Sbjct:   242 LDLSNNHFNGSIPQCLKYST------YFHTLNL------RNNSLSGVLPNLFIKDS-QLR 288

Query:   164 SLNLFHNHFKEKFPGSI 180
             SL++  N+   K P S+
Sbjct:   289 SLDVSSNNLVGKLPKSL 305

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2094613 RLP38 "receptor like protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 63/197 (31%), Positives = 93/197 (47%)

Query:     2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLP 61
             +P+    L +L  LDLS N F    P  IS+        L NLTSL   ISYN LEG++P
Sbjct:   294 VPSSLSKLVNLELLDLSHNNFRGLSPRSISK--------LVNLTSL--DISYNKLEGQVP 343

Query:    62 TSFGRLREPRSISLSWAN-----KSQEILE----IFHSFSRDN-------W--TLRSLQI 103
                 +    +S+ LS  +     KS E++     +  +   ++       W    R +  
Sbjct:   344 YFIWKPSNLQSVDLSHNSFFDLGKSVEVVNGAKLVGLNLGSNSLQGPIPQWICNFRFVFF 403

Query:   104 LDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALR 163
             LD++ N  +G+IP C+ NS+        + LNL        N+ SG LP EL  D   LR
Sbjct:   404 LDLSDNRFTGSIPQCLKNSTD------FNTLNL------RNNSLSGFLP-ELCMDSTMLR 450

Query:   164 SLNLFHNHFKEKFPGSI 180
             SL++ +N+F  K P S+
Sbjct:   451 SLDVSYNNFVGKLPKSL 467

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2207036 AT1G72180 [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 61/183 (33%), Positives = 85/183 (46%)

Query:     2 IPN-GPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKL 60
             IPN  P  L SL  LD+S N  N     WI  +N  +S GLGN     H   Y   EG +
Sbjct:   138 IPNLSP--LKSLEILDISGNFLNGEFQSWIGNMNQLVSLGLGN----NH---YE--EGII 186

Query:    61 PTSFGRLREPRSISLSWANKSQEILE-IFHSFSRDNWTLRSLQILD---IACNNLSGAIP 116
             P S G L++   + L+ +N + +I   IF   + D + + +  I D   I  + L     
Sbjct:   187 PESIGGLKKLTWLFLARSNLTGKIPNSIFDLNALDTFDIANNAISDDFPILISRLVNLTK 246

Query:   117 ACISNSSARKEVGYTSILNLLRIT--DRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174
               + N+S   ++    I NL R+   D S N  SGVLP EL   L  LR  +   N+F  
Sbjct:   247 IELFNNSLTGKIP-PEIKNLTRLREFDISSNQLSGVLPEELGV-LKELRVFHCHENNFTG 304

Query:   175 KFP 177
             +FP
Sbjct:   305 EFP 307

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 2.3e-09, P = 2.3e-09
 Identities = 54/179 (30%), Positives = 85/179 (47%)

Query:    11 SLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFGRLREP 70
             +L+ LDLS+N+    +P+W+ R+    S  L N +     +S         TS       
Sbjct:   542 NLQILDLSNNKIKGQVPDWLWRMPTLNSVDLSNNSLSGFHVSVKASPESQLTSVDLSSNA 601

Query:    71 RSISLSWANKSQEILEIFHSFSRDNWT---------LRSLQILDIACNNLSGAIPACISN 121
                 L   +KS   L  F S S +N+T         L SL+ILD++ NNL+G++P C+  
Sbjct:   602 FQGPLFLPSKS---LRYF-SGSNNNFTGKIPRSICGLSSLEILDLSNNNLNGSLPWCLE- 656

Query:   122 SSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180
                       ++++ L   D   N+ SG LP E+  +   LRSL++ HN  + K PGS+
Sbjct:   657 ----------TLMSSLSDLDLRNNSLSGSLP-EIFMNATKLRSLDVSHNRMEGKLPGSL 704

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2098267 IMK2 "inflorescence meristem receptor-like kinase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 3.7e-09, P = 3.7e-09
 Identities = 52/158 (32%), Positives = 77/158 (48%)

Query:    36 TISSGLGNLTSL-KHSISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRD 94
             TIS  +G L SL K S+  NV+ G +P S G L+  R + L + N+    + +    S  
Sbjct:   109 TISEKIGQLGSLRKLSLHNNVIAGSVPRSLGYLKSLRGVYL-FNNRLSGSIPV----SLG 163

Query:    95 NWTLRSLQILDIACNNLSGAIPACISNSSA--RKEVGYTSILNLLRIT----------DR 142
             N  L  LQ LD++ N L+GAIP  ++ S+   R  + + S+   L ++          D 
Sbjct:   164 NCPL--LQNLDLSSNQLTGAIPPSLTESTRLYRLNLSFNSLSGPLPVSVARSYTLTFLDL 221

Query:   143 SKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180
               NN SG +P   V     L++LNL HN F    P S+
Sbjct:   222 QHNNLSGSIPDFFVNGSHPLKTLNLDHNRFSGAVPVSL 259

GO:0004672 "protein kinase activity" evidence=IEA;NAS

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016020 "membrane" evidence=NAS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0008283 "cell proliferation" evidence=RCA

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 6.8e-09, P = 6.8e-09
 Identities = 54/185 (29%), Positives = 94/185 (50%)

Query:     1 PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRI-NC------------TISSGLGNLTSL 47
             P  +   +L  L  LDLS+N  NS IP W+  + N             +I +G  NL  L
Sbjct:   238 PTLSSSADLKLLEVLDLSENSLNSPIPNWLFGLTNLRKLFLRWDFLQGSIPTGFKNLKLL 297

Query:    48 KH-SISYNV-LEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILD 105
             +   +S N+ L+G++P+  G L + + + LS    + +I     +FSR+     SL  LD
Sbjct:   298 ETLDLSNNLALQGEIPSVLGDLPQLKFLDLSANELNGQIHGFLDAFSRNKGN--SLVFLD 355

Query:   106 IACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSL 165
             ++ N L+G +P         + +G  S+ NL  + D S N+F+G +P+  + ++ +L+ L
Sbjct:   356 LSSNKLAGTLP---------ESLG--SLRNLQTL-DLSSNSFTGSVPSS-IGNMASLKKL 402

Query:   166 NLFHN 170
             +L +N
Sbjct:   403 DLSNN 407

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2154344 AT5G48940 [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 7.0e-09, P = 7.0e-09
 Identities = 68/205 (33%), Positives = 93/205 (45%)

Query:     2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRI---------NCTISS----GLGNLTSLK 48
             IP G   L +L +LDLS+N  +  +P  IS           N T+       L +LT L+
Sbjct:   483 IPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQ 542

Query:    49 H-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIA 107
                +S N L GK+P S G L     + LS  + + EI       S  + T  +LQ+LD++
Sbjct:   543 VLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNGEIPS-----SLGHCT--NLQLLDLS 595

Query:   108 CNNLSGAIPACIS---------NSSARKEVGYT----SILNLLRITDRSKNNFSGVLPAE 154
              NN+SG IP  +          N S     G+     S LN L + D S N  SG L A 
Sbjct:   596 SNNISGTIPEELFDIQDLDIALNLSWNSLDGFIPERISALNRLSVLDISHNMLSGDLSA- 654

Query:   155 LVTDLVALRSLNLFHNHFKEKFPGS 179
              ++ L  L SLN+ HN F    P S
Sbjct:   655 -LSGLENLVSLNISHNRFSGYLPDS 678

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.02980001 annotation not avaliable (832 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	181
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 67.6 bits (165), Expect = 2e-13
 Identities = 67/207 (32%), Positives = 98/207 (47%), Gaps = 38/207 (18%)

Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINC-------------TISSGLGNLTSL 47
            IP G  ++ +L  LDLS+N  +  IP  I   +               I + L NLTSL
Sbjct: 133 SIPRG--SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSL 190

Query: 48  KH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEI-LEIFHSFSRDNWTLRSLQILD 105
           +  +++ N L G++P   G+++  + I L + N S EI  EI          L SL  LD
Sbjct: 191 EFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG--------LTSLNHLD 242

Query: 106 IACNNLSGAIPACISNSS--------ARKEVGYT--SILNLLRIT--DRSKNNFSGVLPA 153
           +  NNL+G IP+ + N            K  G    SI +L ++   D S N+ SG +P 
Sbjct: 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP- 301

Query: 154 ELVTDLVALRSLNLFHNHFKEKFPGSI 180
           ELV  L  L  L+LF N+F  K P ++
Sbjct: 302 ELVIQLQNLEILHLFSNNFTGKIPVAL 328

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 56/183 (30%), Positives = 88/183 (48%), Gaps = 32/183 (17%)

Query: 10  SSLRYLDLSDNQFNSTIPEWI-----------SRINCTISSGLGNLTSLKH-SISYNVLE 57
           SSLRYL+LS+N F  +IP              + ++  I + +G+ +SLK   +  NVL 
Sbjct: 118 SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177

Query: 58  GKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPA 117
           GK+P S   L     ++L+    +Q + +I     +    ++SL+ + +  NNLSG IP 
Sbjct: 178 GKIPNSLTNLTSLEFLTLA---SNQLVGQIPRELGQ----MKSLKWIYLGYNNLSGEIP- 229

Query: 118 CISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFP 177
                    E+G  + LN L   D   NN +G +P+ L  +L  L+ L L+ N      P
Sbjct: 230 --------YEIGGLTSLNHL---DLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIP 277

Query: 178 GSI 180
            SI
Sbjct: 278 PSI 280

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 56/189 (29%), Positives = 78/189 (41%), Gaps = 48/189 (25%)

Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKL 60
           PIP+   NL +L+YL L  N+ +  IP  I          L  L SL   +S N L G++
Sbjct: 251 PIPSSLGNLKNLQYLFLYQNKLSGPIPPSI--------FSLQKLISL--DLSDNSLSGEI 300

Query: 61  PTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWT---------LRSLQILDIACNNL 111
           P    +L+                LEI H FS +N+T         L  LQ+L +  N  
Sbjct: 301 PELVIQLQN---------------LEILHLFS-NNFTGKIPVALTSLPRLQVLQLWSNKF 344

Query: 112 SGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNH 171
           SG IP  +               N L + D S NN +G +P E +     L  L LF N 
Sbjct: 345 SGEIPKNLGKH------------NNLTVLDLSTNNLTGEIP-EGLCSSGNLFKLILFSNS 391

Query: 172 FKEKFPGSI 180
            + + P S+
Sbjct: 392 LEGEIPKSL 400

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 61/209 (29%), Positives = 85/209 (40%), Gaps = 50/209 (23%)

Query: 6   PENL---SSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPT 62
           P+NL   ++L  LDLS N     IPE        + S  GNL  L   +  N LEG++P 
Sbjct: 349 PKNLGKHNNLTVLDLSTNNLTGEIPE-------GLCSS-GNLFKL--ILFSNSLEGEIPK 398

Query: 63  SFGRLREPRSISLSWANKSQEI--------LEIFHSFSRDN---------WTLRSLQILD 105
           S G  R  R + L   + S E+        L  F   S +N         W + SLQ+L 
Sbjct: 399 SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLS 458

Query: 106 IACNNLSGAIPAC---------------ISNSSARKEVGYTSILNLLRITDRSKNNFSGV 150
           +A N   G +P                  S +  RK    + ++ L      S+N  SG 
Sbjct: 459 LARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQL----KLSENKLSGE 514

Query: 151 LPAELVTDLVALRSLNLFHNHFKEKFPGS 179
           +P EL +    L SL+L HN    + P S
Sbjct: 515 IPDEL-SSCKKLVSLDLSHNQLSGQIPAS 542

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 57/185 (30%), Positives = 84/185 (45%), Gaps = 32/185 (17%)

Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKL 60
           PIP    +L  L  LDLSDN  +  IPE + +        L NL  L H  S N   GK+
Sbjct: 275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ--------LQNLEIL-HLFS-NNFTGKI 324

Query: 61  PTSFGRLREPRSISLSWANK-SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI 119
           P +   L   + + L W+NK S EI        ++     +L +LD++ NNL+G IP  +
Sbjct: 325 PVALTSLPRLQVLQL-WSNKFSGEI-------PKNLGKHNNLTVLDLSTNNLTGEIPEGL 376

Query: 120 SNS-----------SARKEVGYT-SILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNL 167
            +S           S   E+  +      LR      N+FSG LP+E  T L  +  L++
Sbjct: 377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF-TKLPLVYFLDI 435

Query: 168 FHNHF 172
            +N+ 
Sbjct: 436 SNNNL 440

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 40/144 (27%), Positives = 58/144 (40%), Gaps = 31/144 (21%)

Query: 10  SSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLR 68
             L  LDLS NQF+  +P             LG+L+ L    +S N L G++P      +
Sbjct: 475 KRLENLDLSRNQFSGAVP-----------RKLGSLSELMQLKLSENKLSGEIPDELSSCK 523

Query: 69  EPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEV 128
           +  S+ LS    S +I   F            L  LD++ N LSG IP  + N  +  +V
Sbjct: 524 KLVSLDLSHNQLSGQIPASFSEMP-------VLSQLDLSQNQLSGEIPKNLGNVESLVQV 576

Query: 129 GYTSILNLLRITDRSKNNFSGVLP 152
                       + S N+  G LP
Sbjct: 577 ------------NISHNHLHGSLP 588

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 12/65 (18%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKL 60
           IP    +++SL  LDLS N FN +IPE            LG LTSL+  +++ N L G++
Sbjct: 458 IPPSLGSITSLEVLDLSYNSFNGSIPE-----------SLGQLTSLRILNLNGNSLSGRV 506

Query: 61  PTSFG 65
           P + G
Sbjct: 507 PAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 34/152 (22%)

Query: 19  DNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFGRLREPRSISLSWA 78
           D QF+ST  +W          GLG        +    L G +P    +LR  +SI+LS  
Sbjct: 408 DCQFDSTKGKWFI-------DGLG--------LDNQGLRGFIPNDISKLRHLQSINLSGN 452

Query: 79  NKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLR 138
           +    I     S +       SL++LD++ N+ +G+IP  +              L  LR
Sbjct: 453 SIRGNIPPSLGSIT-------SLEVLDLSYNSFNGSIPESLGQ------------LTSLR 493

Query: 139 ITDRSKNNFSGVLPAELVTDLVALRSLNLFHN 170
           I + + N+ SG +PA L   L+   S N   N
Sbjct: 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 26/146 (17%)

Query: 36  TISSGLGNLTSLKHSISYNVLEGKLPTSFGRLREPRSISLSWANKSQEI-LEIFHSFSRD 94
           +I+  L  L++   S    + +G    +  R+    SI LS  N S +I   IF      
Sbjct: 40  SINDPLKYLSNWNSSADVCLWQGITCNNSSRVV---SIDLSGKNISGKISSAIFR----- 91

Query: 95  NWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAE 154
              L  +Q ++++ N LSG IP  I  +S+            LR  + S NNF+G +P  
Sbjct: 92  ---LPYIQTINLSNNQLSGPIPDDIFTTSSS-----------LRYLNLSNNNFTGSIPR- 136

Query: 155 LVTDLVALRSLNLFHNHFKEKFPGSI 180
               +  L +L+L +N    + P  I
Sbjct: 137 --GSIPNLETLDLSNNMLSGEIPNDI 160

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 36.7 bits (85), Expect = 0.004
 Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 43/119 (36%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKL 60
           IPN    L  L+ ++LS N     IP             LG++TSL+   +SYN   G +
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIP-----------PSLGSITSLEVLDLSYNSFNGSI 482

Query: 61  PTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI 119
           P S G+                               L SL+IL++  N+LSG +PA +
Sbjct: 483 PESLGQ-------------------------------LTSLRILNLNGNSLSGRVPAAL 510

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	181
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.84
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.84
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.79
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.73
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.65
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.64
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.6
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.6
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.6
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.53
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.45
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.39
PLN03150	623	hypothetical protein; Provisional	99.36
PLN03150	623	hypothetical protein; Provisional	99.31
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.27
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.24
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.22
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.22
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.2
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.17
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.16
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.15
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.15
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.15
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.11
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.09
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.02
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.01
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.99
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.98
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.9
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.85
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.73
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.7
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.57
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.51
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.49
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.45
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.44
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.4
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.36
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.35
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.31
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.27
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.13
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.07
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.02
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.02
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.86
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.55
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.52
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.45
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.41
PRK15386	426	type III secretion protein GogB; Provisional	97.35
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.16
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.14
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.14
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.11
PRK15386	426	type III secretion protein GogB; Provisional	97.08
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.96
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.86
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.14
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.12
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.99
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.71
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	95.53
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.38
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.06
smart00370	26	LRR Leucine-rich repeats, outliers.	95.06
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.06
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.88
smart00370	26	LRR Leucine-rich repeats, outliers.	94.88
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.81
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.61
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.68
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.3
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	91.62
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.34
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	86.98
KOG4308	478	consensus LRR-containing protein [Function unknown	86.29
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	85.44
KOG1947	482	consensus Leucine rich repeat proteins, some prote	84.46

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.84  E-value=6.4e-21  Score=164.79  Aligned_cols=168  Identities=33%  Similarity=0.472  Sum_probs=81.4

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccc-------------cccccCCcccccccchh-ccccccccCCCCcccCCC
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRL   67 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l   67 (181)
                      +|..+.++++|+.|++++|.+.+.+|..+..             +.+.+|..++++++|+. ++++|.+.+..|..++.+
T Consensus       156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  235 (968)
T PLN00113        156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL  235 (968)
T ss_pred             CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcC
Confidence            3445555566666666666655555554433             22234455555555555 555555555555555555


Q ss_pred             CCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCC
Q 039018           68 REPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILN  135 (181)
Q Consensus        68 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~  135 (181)
                      ++|++|++++|.+.+..|..+       ..+.+|+.|++++|.+++.+|..+..+++|++ .+..|           .++
T Consensus       236 ~~L~~L~L~~n~l~~~~p~~l-------~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  308 (968)
T PLN00113        236 TSLNHLDLVYNNLTGPIPSSL-------GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ  308 (968)
T ss_pred             CCCCEEECcCceeccccChhH-------hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC
Confidence            555555555555555555554       44444444444444444444444444444444 22222           233


Q ss_pred             cccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCC
Q 039018          136 LLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFP  177 (181)
Q Consensus       136 ~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p  177 (181)
                      +|++|++++|.+.+.+|..+ ..+++|+.|++++|.+++.+|
T Consensus       309 ~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p  349 (968)
T PLN00113        309 NLEILHLFSNNFTGKIPVAL-TSLPRLQVLQLWSNKFSGEIP  349 (968)
T ss_pred             CCcEEECCCCccCCcCChhH-hcCCCCCEEECcCCCCcCcCC
Confidence            34444444444443344333 444444444444444444433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.84  E-value=7.1e-21  Score=164.51  Aligned_cols=171  Identities=32%  Similarity=0.484  Sum_probs=138.4

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccc-------------cccccCCcccccccchh-ccccccccCCCCcccCCC
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRL   67 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l   67 (181)
                      +|..+.++++|++|++++|.+.+.+|+.+..             +.+.+|..++++++|++ ++++|.+.+..|..++.+
T Consensus       180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  259 (968)
T PLN00113        180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL  259 (968)
T ss_pred             CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence            5778888999999999999988888877765             34567888889999999 999999988888889999


Q ss_pred             CCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCC
Q 039018           68 REPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILN  135 (181)
Q Consensus        68 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~  135 (181)
                      ++|++|++++|.+.+..|..+       ..+.+|+.|++++|.+++.+|..+..+++|++ .+.+|           .++
T Consensus       260 ~~L~~L~L~~n~l~~~~p~~l-------~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~  332 (968)
T PLN00113        260 KNLQYLFLYQNKLSGPIPPSI-------FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP  332 (968)
T ss_pred             CCCCEEECcCCeeeccCchhH-------hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCC
Confidence            999999999998888888888       77888888888888888778888888888877 44444           466


Q ss_pred             cccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCCC
Q 039018          136 LLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI  180 (181)
Q Consensus       136 ~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i  180 (181)
                      +|+.|++++|.+.+.+|..+ +.+++|+.|++++|.+++.+|.++
T Consensus       333 ~L~~L~L~~n~l~~~~p~~l-~~~~~L~~L~Ls~n~l~~~~p~~~  376 (968)
T PLN00113        333 RLQVLQLWSNKFSGEIPKNL-GKHNNLTVLDLSTNNLTGEIPEGL  376 (968)
T ss_pred             CCCEEECcCCCCcCcCChHH-hCCCCCcEEECCCCeeEeeCChhH
Confidence            77888888888877777766 777888888888888777776543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.79  E-value=2.9e-21  Score=132.05  Aligned_cols=152  Identities=26%  Similarity=0.389  Sum_probs=106.9

Q ss_pred             CCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccc
Q 039018            6 PENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEI   84 (181)
Q Consensus         6 ~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~   84 (181)
                      +.++.+++.|-+|.|.++            .+|+.+.++.+|++ .+.+|+++ ++|.+++.+++|+.|+++.|++. ..
T Consensus        29 Lf~~s~ITrLtLSHNKl~------------~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~l   94 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT------------VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-IL   94 (264)
T ss_pred             ccchhhhhhhhcccCcee------------ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cC
Confidence            345566666777777776            44555666667766 67777766 66666777777777777666654 55


Q ss_pred             hhHhhhccCCCCCCCCccEEEcccccce-eecCchhhccccccc-ccccc----------cCCcccEEEccCCccccCCC
Q 039018           85 LEIFHSFSRDNWTLRSLQILDIACNNLS-GAIPACISNSSARKE-VGYTS----------ILNLLRITDRSKNNFSGVLP  152 (181)
Q Consensus        85 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~p~~~~~~~~l~~-~~~~n----------~l~~L~~l~l~~n~~~~~~p  152 (181)
                      |..|       +.++.|+.||+.+|.+. ..+|+.|..|..|+- ++..|          .+++|++|.+..|.+. .+|
T Consensus        95 prgf-------gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lp  166 (264)
T KOG0617|consen   95 PRGF-------GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLP  166 (264)
T ss_pred             cccc-------CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCc
Confidence            6666       66666666666666554 245666666655555 33333          5777999999999888 789


Q ss_pred             hhHHHhcccCCEeEecCCcccccCCCCCC
Q 039018          153 AELVTDLVALRSLNLFHNHFKEKFPGSIH  181 (181)
Q Consensus       153 ~~~~~~l~~L~~L~L~~n~l~~~~p~~i~  181 (181)
                      +++ +.+..|+.|++.+|+++ .+|+.++
T Consensus       167 kei-g~lt~lrelhiqgnrl~-vlppel~  193 (264)
T KOG0617|consen  167 KEI-GDLTRLRELHIQGNRLT-VLPPELA  193 (264)
T ss_pred             HHH-HHHHHHHHHhcccceee-ecChhhh
Confidence            999 99999999999999999 8888764

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.73  E-value=1.5e-19  Score=123.72  Aligned_cols=128  Identities=24%  Similarity=0.352  Sum_probs=111.2

Q ss_pred             ccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchh
Q 039018           41 LGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI  119 (181)
Q Consensus        41 l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~  119 (181)
                      +-++..+.. .+++|+++ .+|..+..+.+|+.|++.+|++. .+|..+       ..+++|+.|+++-|++. .+|..|
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~i-------ssl~klr~lnvgmnrl~-~lprgf   98 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSI-------SSLPKLRILNVGMNRLN-ILPRGF   98 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhh-------hhchhhhheecchhhhh-cCcccc
Confidence            445666667 79999999 78889999999999999999987 778888       99999999999999998 999999


Q ss_pred             hccccccc-ccccc------------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCCCC
Q 039018          120 SNSSARKE-VGYTS------------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSIH  181 (181)
Q Consensus       120 ~~~~~l~~-~~~~n------------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i~  181 (181)
                      +..+.|.. ++..|            .+..|+.|.++.|.+. .+|..+ +++++|+.|.+..|.+- ++|..||
T Consensus        99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dv-g~lt~lqil~lrdndll-~lpkeig  170 (264)
T KOG0617|consen   99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDV-GKLTNLQILSLRDNDLL-SLPKEIG  170 (264)
T ss_pred             CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhh-hhhcceeEEeeccCchh-hCcHHHH
Confidence            99999888 44444            5556888999999998 899999 99999999999999998 8888764

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.65  E-value=2.3e-17  Score=125.83  Aligned_cols=45  Identities=38%  Similarity=0.556  Sum_probs=38.8

Q ss_pred             cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCCC
Q 039018          133 ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI  180 (181)
Q Consensus       133 ~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i  180 (181)
                      .+++|+.|++++|.+. .+|.++ +.+..||.+++++|++. .+|+++
T Consensus       433 ~l~kLt~L~L~NN~Ln-~LP~e~-~~lv~Lq~LnlS~NrFr-~lP~~~  477 (565)
T KOG0472|consen  433 QLQKLTFLDLSNNLLN-DLPEEM-GSLVRLQTLNLSFNRFR-MLPECL  477 (565)
T ss_pred             hhhcceeeecccchhh-hcchhh-hhhhhhheecccccccc-cchHHH
Confidence            7788899999999887 889988 88888999999999998 777653

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.64  E-value=1e-17  Score=134.19  Aligned_cols=133  Identities=24%  Similarity=0.375  Sum_probs=102.8

Q ss_pred             ccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceee
Q 039018           36 TISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGA  114 (181)
Q Consensus        36 ~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~  114 (181)
                      .+|.++..+.+|+. +++.|.+. .+|+.+..+++|+.|++++|.++. +....       ....+++.|++++|+++ .
T Consensus       213 N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~-------~~W~~lEtLNlSrNQLt-~  282 (1255)
T KOG0444|consen  213 NIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTE-------GEWENLETLNLSRNQLT-V  282 (1255)
T ss_pred             cCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee-eeccH-------HHHhhhhhhccccchhc-c
Confidence            47778888888888 88888888 788888888899999999888863 33333       45677778888888887 7


Q ss_pred             cCchhhcccccccccccc-------------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCCCC
Q 039018          115 IPACISNSSARKEVGYTS-------------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSIH  181 (181)
Q Consensus       115 ~p~~~~~~~~l~~~~~~n-------------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i~  181 (181)
                      +|+.+..++.|+.+..++             .+..|+.+..++|.+. -+|+.+ ..|..|+.|.|++|++- ++|+.|.
T Consensus       283 LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEgl-cRC~kL~kL~L~~NrLi-TLPeaIH  359 (1255)
T KOG0444|consen  283 LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGL-CRCVKLQKLKLDHNRLI-TLPEAIH  359 (1255)
T ss_pred             chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhh-hhhHHHHHhccccccee-echhhhh
Confidence            888888888877744333             5556778888888887 778887 88888888888888887 7887763

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.60  E-value=2.4e-17  Score=125.65  Aligned_cols=165  Identities=25%  Similarity=0.328  Sum_probs=116.8

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccc------------cccccCCcccccccchh-ccccccccCCCCcccCCCC
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISR------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLR   68 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~   68 (181)
                      +|+++.++..+..+++++|.+. .+|+.++.            ....+|.++..+.++.. ++.+|.+. .+|+..-.|+
T Consensus       106 lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~  183 (565)
T KOG0472|consen  106 LPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMK  183 (565)
T ss_pred             ccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh-hCCHHHHHHH
Confidence            5666666666666666666666 44444443            12245556666666666 66666666 3333333466


Q ss_pred             CCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccc------------cCCc
Q 039018           69 EPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTS------------ILNL  136 (181)
Q Consensus        69 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n------------~l~~  136 (181)
                      .|+.+|...|.+. .+|+.+       +.+.+|..|++..|++. .+| +|..|..|+++..++            .+.+
T Consensus       184 ~L~~ld~~~N~L~-tlP~~l-------g~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~  253 (565)
T KOG0472|consen  184 RLKHLDCNSNLLE-TLPPEL-------GGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNS  253 (565)
T ss_pred             HHHhcccchhhhh-cCChhh-------cchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhccccc
Confidence            6666666666544 556666       88888888888888886 677 678888888854443            7888


Q ss_pred             ccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCCCC
Q 039018          137 LRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSIH  181 (181)
Q Consensus       137 L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i~  181 (181)
                      +.+||+..|++. ..|.++ ..+.+|.+||+|+|.++ .+|.+.|
T Consensus       254 l~vLDLRdNklk-e~Pde~-clLrsL~rLDlSNN~is-~Lp~sLg  295 (565)
T KOG0472|consen  254 LLVLDLRDNKLK-EVPDEI-CLLRSLERLDLSNNDIS-SLPYSLG  295 (565)
T ss_pred             ceeeeccccccc-cCchHH-HHhhhhhhhcccCCccc-cCCcccc
Confidence            999999999999 889998 89999999999999999 7887654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.60  E-value=4e-17  Score=130.82  Aligned_cols=155  Identities=26%  Similarity=0.326  Sum_probs=87.0

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcc-cCCCCCCcEEEcCCCc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTS-FGRLREPRSISLSWAN   79 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~   79 (181)
                      ||+.++++..|++||||.|+++            .+|..+..-+++-+ ++++|+++ .+|.. +.+++-|-+||+++|+
T Consensus        95 iP~diF~l~dLt~lDLShNqL~------------EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   95 IPTDIFRLKDLTILDLSHNQLR------------EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             CCchhcccccceeeecchhhhh------------hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence            5566666666666666666665            23333344444445 56666666 44443 3456666666666666


Q ss_pred             ccccchhHhhhccCCCCCCCCccEEEcccccce-------------------------eecCchhhccccccc-ccccc-
Q 039018           80 KSQEILEIFHSFSRDNWTLRSLQILDIACNNLS-------------------------GAIPACISNSSARKE-VGYTS-  132 (181)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~-------------------------~~~p~~~~~~~~l~~-~~~~n-  132 (181)
                      +. .+|..+       .++..|+.|.+++|++.                         .-+|.++..+.+|.. +++.| 
T Consensus       162 Le-~LPPQ~-------RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~  233 (1255)
T KOG0444|consen  162 LE-MLPPQI-------RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN  233 (1255)
T ss_pred             hh-hcCHHH-------HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence            54 344444       34444444444444331                         124444555555554 44443 


Q ss_pred             ---------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCCC
Q 039018          133 ---------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI  180 (181)
Q Consensus       133 ---------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i  180 (181)
                               .+.+|+.|++|+|+|+ .+-..+ +.+.+|..|++|+|+++ .+|.++
T Consensus       234 Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~-~~W~~lEtLNlSrNQLt-~LP~av  287 (1255)
T KOG0444|consen  234 LPIVPECLYKLRNLRRLNLSGNKIT-ELNMTE-GEWENLETLNLSRNQLT-VLPDAV  287 (1255)
T ss_pred             CCcchHHHhhhhhhheeccCcCcee-eeeccH-HHHhhhhhhccccchhc-cchHHH
Confidence                     5556677777777776 555555 66777777777777777 677655

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.60  E-value=2.5e-16  Score=125.03  Aligned_cols=157  Identities=21%  Similarity=0.216  Sum_probs=117.6

Q ss_pred             CCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCccccc
Q 039018            5 GPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQE   83 (181)
Q Consensus         5 ~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~   83 (181)
                      .|..|.+++.|+|..|++.....           .++-++++|+. ++++|.+....++.+...++|++|+++.|.+...
T Consensus       264 ~Fy~l~kme~l~L~~N~l~~vn~-----------g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l  332 (873)
T KOG4194|consen  264 AFYGLEKMEHLNLETNRLQAVNE-----------GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL  332 (873)
T ss_pred             ceeeecccceeecccchhhhhhc-----------ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccC
Confidence            34556667777777777762222           34567888888 9999999988888888889999999999988866


Q ss_pred             chhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc--------------cCCcccEEEccCCccc
Q 039018           84 ILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS--------------ILNLLRITDRSKNNFS  148 (181)
Q Consensus        84 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n--------------~l~~L~~l~l~~n~~~  148 (181)
                      .+..|       ..+..|+.|.++.|.++..-...|..+++|+. ++..|              .+++|+.|.+.+|++.
T Consensus       333 ~~~sf-------~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk  405 (873)
T KOG4194|consen  333 DEGSF-------RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK  405 (873)
T ss_pred             ChhHH-------HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee
Confidence            66777       56677777777777776444456667777766 44444              7888999999999998


Q ss_pred             cCCChhHHHhcccCCEeEecCCcccccCCCCC
Q 039018          149 GVLPAELVTDLVALRSLNLFHNHFKEKFPGSI  180 (181)
Q Consensus       149 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i  180 (181)
                       .+|+--|.++++|++|||.+|.+...-|.+|
T Consensus       406 -~I~krAfsgl~~LE~LdL~~NaiaSIq~nAF  436 (873)
T KOG4194|consen  406 -SIPKRAFSGLEALEHLDLGDNAIASIQPNAF  436 (873)
T ss_pred             -ecchhhhccCcccceecCCCCcceeeccccc
Confidence             7776555999999999999999985444443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.53  E-value=6.9e-16  Score=122.61  Aligned_cols=129  Identities=20%  Similarity=0.193  Sum_probs=80.5

Q ss_pred             ccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchh
Q 039018           41 LGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI  119 (181)
Q Consensus        41 l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~  119 (181)
                      |..|.++++ ++..|.+...--..+.++++|+.|++++|.+....++.+       .-+++|..|++++|+++.--+..|
T Consensus       265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W-------sftqkL~~LdLs~N~i~~l~~~sf  337 (873)
T KOG4194|consen  265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW-------SFTQKLKELDLSSNRITRLDEGSF  337 (873)
T ss_pred             eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh-------hhcccceeEeccccccccCChhHH
Confidence            344555555 566666654444455566666666666666666666666       566777777777777762223456


Q ss_pred             hccccccc-ccccc-----------cCCcccEEEccCCccccCCCh--hHHHhcccCCEeEecCCcccccCC
Q 039018          120 SNSSARKE-VGYTS-----------ILNLLRITDRSKNNFSGVLPA--ELVTDLVALRSLNLFHNHFKEKFP  177 (181)
Q Consensus       120 ~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~~~~p~--~~~~~l~~L~~L~L~~n~l~~~~p  177 (181)
                      ..++.|.+ .+..|           ++++|+.|||++|.++..+.+  ..|.+++.|+.|.|.+|++. .||
T Consensus       338 ~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~  408 (873)
T KOG4194|consen  338 RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIP  408 (873)
T ss_pred             HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecc
Confidence            66666555 34444           667777777777777654332  23366777788888888777 555

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.45  E-value=3.4e-14  Score=117.80  Aligned_cols=158  Identities=25%  Similarity=0.321  Sum_probs=123.5

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccc--------------cccccCCccc--ccccchh-ccccccccCCCCccc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISR--------------INCTISSGLG--NLTSLKH-SISYNVLEGKLPTSF   64 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~--------------~~~~l~~~l~--~l~~L~~-~l~~n~~~~~~~~~~   64 (181)
                      +|+...++++|++|++..|.+. .+|+.+..              .....| ..+  .+..|+. ++.+|.+++..-..+
T Consensus       302 ip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp-~~~e~~~~~Lq~LylanN~Ltd~c~p~l  379 (1081)
T KOG0618|consen  302 IPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLP-SYEENNHAALQELYLANNHLTDSCFPVL  379 (1081)
T ss_pred             CCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccc-cccchhhHHHHHHHHhcCcccccchhhh
Confidence            6888899999999999999998 77764433              000111 122  3567778 899999998877788


Q ss_pred             CCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccc-cccc---------cC
Q 039018           65 GRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEV-GYTS---------IL  134 (181)
Q Consensus        65 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~-~~~n---------~l  134 (181)
                      .+.++|++|++++|++.......+       .++..|+.|++|+|+++ .+|.++..++.|+++ .-+|         .+
T Consensus       380 ~~~~hLKVLhLsyNrL~~fpas~~-------~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l  451 (1081)
T KOG0618|consen  380 VNFKHLKVLHLSYNRLNSFPASKL-------RKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFPELAQL  451 (1081)
T ss_pred             ccccceeeeeecccccccCCHHHH-------hchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeechhhhhc
Confidence            899999999999999874333445       78999999999999999 999999999999884 3334         78


Q ss_pred             CcccEEEccCCccccC-CChhHHHhcccCCEeEecCCc
Q 039018          135 NLLRITDRSKNNFSGV-LPAELVTDLVALRSLNLFHNH  171 (181)
Q Consensus       135 ~~L~~l~l~~n~~~~~-~p~~~~~~l~~L~~L~L~~n~  171 (181)
                      +.|+.+|++.|+++.. +|..  ...++|++|||++|.
T Consensus       452 ~qL~~lDlS~N~L~~~~l~~~--~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  452 PQLKVLDLSCNNLSEVTLPEA--LPSPNLKYLDLSGNT  487 (1081)
T ss_pred             CcceEEecccchhhhhhhhhh--CCCcccceeeccCCc
Confidence            8899999999999843 3322  344899999999987

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.39  E-value=2.1e-14  Score=113.75  Aligned_cols=139  Identities=32%  Similarity=0.432  Sum_probs=101.8

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK   80 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (181)
                      ||.++.++..|+.+||+.|++. -+|           ..++.++ |++ .+++|++. .+|+.++....|..||.+.|.+
T Consensus       113 ip~~i~~L~~lt~l~ls~NqlS-~lp-----------~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei  178 (722)
T KOG0532|consen  113 IPEAICNLEALTFLDLSSNQLS-HLP-----------DGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEI  178 (722)
T ss_pred             cchhhhhhhHHHHhhhccchhh-cCC-----------hhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhh
Confidence            5667777777777777777776 333           3333332 455 66777776 6777777777777777777776


Q ss_pred             cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcc
Q 039018           81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLV  160 (181)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~  160 (181)
                      . .+|..+       +.+.+|+.+.+..|++. .+|+++..++             |..||+|+|+++ .+|-++ .+|.
T Consensus       179 ~-slpsql-------~~l~slr~l~vrRn~l~-~lp~El~~Lp-------------Li~lDfScNkis-~iPv~f-r~m~  234 (722)
T KOG0532|consen  179 Q-SLPSQL-------GYLTSLRDLNVRRNHLE-DLPEELCSLP-------------LIRLDFSCNKIS-YLPVDF-RKMR  234 (722)
T ss_pred             h-hchHHh-------hhHHHHHHHHHhhhhhh-hCCHHHhCCc-------------eeeeecccCcee-ecchhh-hhhh
Confidence            5 555666       67777777777777776 6777776544             889999999999 899888 9999


Q ss_pred             cCCEeEecCCcccccCCCC
Q 039018          161 ALRSLNLFHNHFKEKFPGS  179 (181)
Q Consensus       161 ~L~~L~L~~n~l~~~~p~~  179 (181)
                      .|++|-|.+|.+. .-|..
T Consensus       235 ~Lq~l~LenNPLq-SPPAq  252 (722)
T KOG0532|consen  235 HLQVLQLENNPLQ-SPPAQ  252 (722)
T ss_pred             hheeeeeccCCCC-CChHH
Confidence            9999999999998 55543

>PLN03150 hypothetical protein; Provisional

Probab=99.36  E-value=2.3e-12  Score=106.88  Aligned_cols=112  Identities=29%  Similarity=0.417  Sum_probs=84.9

Q ss_pred             chh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccc
Q 039018           47 LKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSAR  125 (181)
Q Consensus        47 L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l  125 (181)
                      ++. ++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+       ..+.+|+.|++++|.+++.+|+.++.++  
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-------~~l~~L~~LdLs~N~lsg~iP~~l~~L~--  490 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-------GSITSLEVLDLSYNSFNGSIPESLGQLT--  490 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHH-------hCCCCCCEEECCCCCCCCCCchHHhcCC--
Confidence            444 677888888888888888888888888888887888777       7888888888888888888888877744  


Q ss_pred             ccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCC
Q 039018          126 KEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFP  177 (181)
Q Consensus       126 ~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p  177 (181)
                                +|++|++++|.+++.+|..+.....++..+++.+|...+..|
T Consensus       491 ----------~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        491 ----------SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             ----------CCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence                      488888888888888887772223466777888776554444

>PLN03150 hypothetical protein; Provisional

Probab=99.31  E-value=3.6e-12  Score=105.78  Aligned_cols=92  Identities=28%  Similarity=0.419  Sum_probs=85.2

Q ss_pred             CCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccc
Q 039018           69 EPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFS  148 (181)
Q Consensus        69 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~  148 (181)
                      .++.|++++|.+.+..|..+       ..+.+|+.|++++|.++|.+|..++.++            +|+.|++++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i-------~~L~~L~~L~Ls~N~l~g~iP~~~~~l~------------~L~~LdLs~N~ls  479 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDI-------SKLRHLQSINLSGNSIRGNIPPSLGSIT------------SLEVLDLSYNSFN  479 (623)
T ss_pred             EEEEEECCCCCccccCCHHH-------hCCCCCCEEECCCCcccCcCChHHhCCC------------CCCEEECCCCCCC
Confidence            37889999999999999999       9999999999999999999999998855            4999999999999


Q ss_pred             cCCChhHHHhcccCCEeEecCCcccccCCCCC
Q 039018          149 GVLPAELVTDLVALRSLNLFHNHFKEKFPGSI  180 (181)
Q Consensus       149 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i  180 (181)
                      +.+|+.+ +.+++|+.|+|++|.++|.+|..+
T Consensus       480 g~iP~~l-~~L~~L~~L~Ls~N~l~g~iP~~l  510 (623)
T PLN03150        480 GSIPESL-GQLTSLRILNLNGNSLSGRVPAAL  510 (623)
T ss_pred             CCCchHH-hcCCCCCEEECcCCcccccCChHH
Confidence            9999988 999999999999999999999865

>PLN03210 Resistant to P

Probab=99.27  E-value=3.9e-11  Score=105.84  Aligned_cols=44  Identities=20%  Similarity=0.089  Sum_probs=33.9

Q ss_pred             CcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCC
Q 039018          135 NLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGS  179 (181)
Q Consensus       135 ~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~  179 (181)
                      ++|+.|++++|...+.+|..+ +.+++|+.|++++|...+.+|..
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si-~~L~~L~~L~Ls~C~~L~~LP~~  821 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSI-QNLHKLEHLEIENCINLETLPTG  821 (1153)
T ss_pred             ccchheeCCCCCCccccChhh-hCCCCCCEEECCCCCCcCeeCCC
Confidence            467888888887666788887 88999999999887655577754

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.24  E-value=1.6e-11  Score=103.01  Aligned_cols=75  Identities=24%  Similarity=0.249  Sum_probs=55.1

Q ss_pred             CCccEEEcccccceeecCchhhccccccc-ccccc-------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCC
Q 039018           99 RSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHN  170 (181)
Q Consensus        99 ~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n  170 (181)
                      .+|+.|++++|+++ .+|...   ++|+. .+.+|       ...+|+.|++++|+++ .+|..+ ..+++|+.++|++|
T Consensus       382 ~~L~~LdLs~N~Lt-~LP~l~---s~L~~LdLS~N~LssIP~l~~~L~~L~Ls~NqLt-~LP~sl-~~L~~L~~LdLs~N  455 (788)
T PRK15387        382 SGLKELIVSGNRLT-SLPVLP---SELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESL-IHLSSETTVNLEGN  455 (788)
T ss_pred             cccceEEecCCccc-CCCCcc---cCCCEEEccCCcCCCCCcchhhhhhhhhccCccc-ccChHH-hhccCCCeEECCCC
Confidence            45777888888777 556533   33444 44444       1234788999999998 899888 89999999999999


Q ss_pred             cccccCCCC
Q 039018          171 HFKEKFPGS  179 (181)
Q Consensus       171 ~l~~~~p~~  179 (181)
                      ++++..|..
T Consensus       456 ~Ls~~~~~~  464 (788)
T PRK15387        456 PLSERTLQA  464 (788)
T ss_pred             CCCchHHHH
Confidence            999876543

>PLN03210 Resistant to P

Probab=99.22  E-value=9.8e-11  Score=103.35  Aligned_cols=80  Identities=16%  Similarity=0.132  Sum_probs=50.7

Q ss_pred             CCCCCccEEEcccccceeecCchhhccccccc-ccccc--------cCCcccEEEccCCccccCCChhHHHhcccCCEeE
Q 039018           96 WTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS--------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLN  166 (181)
Q Consensus        96 ~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n--------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~  166 (181)
                      +.+++|+.|++++|...+.+|... .+++|++ .+.++        ...+|+.|++++|.++ .+|.++ ..+++|+.|+
T Consensus       799 ~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si-~~l~~L~~L~  875 (1153)
T PLN03210        799 QNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWI-EKFSNLSFLD  875 (1153)
T ss_pred             hCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHH-hcCCCCCEEE
Confidence            566666666666653333555543 3455555 33332        2345778888888887 788887 8899999999


Q ss_pred             ecC-CcccccCCCC
Q 039018          167 LFH-NHFKEKFPGS  179 (181)
Q Consensus       167 L~~-n~l~~~~p~~  179 (181)
                      +++ +.+. .+|..
T Consensus       876 L~~C~~L~-~l~~~  888 (1153)
T PLN03210        876 MNGCNNLQ-RVSLN  888 (1153)
T ss_pred             CCCCCCcC-ccCcc
Confidence            987 4444 56654

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.22  E-value=3.1e-11  Score=101.45  Aligned_cols=39  Identities=31%  Similarity=0.518  Sum_probs=26.4

Q ss_pred             cccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCC
Q 039018          136 LLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGS  179 (181)
Q Consensus       136 ~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~  179 (181)
                      +|+.|++++|+++ .+|..+   .+.|+.|++++|.++ .+|+.
T Consensus       347 sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt-~LP~~  385 (754)
T PRK15370        347 ELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALT-NLPEN  385 (754)
T ss_pred             cccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCC-CCCHh
Confidence            5677777777776 566544   256777777777777 56654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.20  E-value=3.2e-11  Score=84.37  Aligned_cols=127  Identities=28%  Similarity=0.299  Sum_probs=47.5

Q ss_pred             CCCcCCCeeeccCcccccccCccccccccccCCccc-ccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccc
Q 039018            7 ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLG-NLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEI   84 (181)
Q Consensus         7 ~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~-~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~   84 (181)
                      .+...++.|+|++|.|. .+.            .++ .+.+|+. ++++|.+. .+. .+..+++|+.|++++|.+....
T Consensus        16 ~n~~~~~~L~L~~n~I~-~Ie------------~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~   80 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIS-TIE------------NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSIS   80 (175)
T ss_dssp             ---------------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-C
T ss_pred             ccccccccccccccccc-ccc------------chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccc
Confidence            34556888999999998 222            244 4678888 99999998 443 5778899999999999987543


Q ss_pred             hhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCCh---hHHHhccc
Q 039018           85 LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPA---ELVTDLVA  161 (181)
Q Consensus        85 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~---~~~~~l~~  161 (181)
                       +.+.      ..+++|+.|++++|+|. .+. .+..+..         +++|+.|++.+|.++. .+.   .++..+|+
T Consensus        81 -~~l~------~~lp~L~~L~L~~N~I~-~l~-~l~~L~~---------l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~  141 (175)
T PF14580_consen   81 -EGLD------KNLPNLQELYLSNNKIS-DLN-ELEPLSS---------LPKLRVLSLEGNPVCE-KKNYRLFVIYKLPS  141 (175)
T ss_dssp             -HHHH------HH-TT--EEE-TTS----SCC-CCGGGGG----------TT--EEE-TT-GGGG-STTHHHHHHHH-TT
T ss_pred             -cchH------HhCCcCCEEECcCCcCC-ChH-HhHHHHc---------CCCcceeeccCCcccc-hhhHHHHHHHHcCh
Confidence             3330      35789999999999986 322 2333333         6669999999999984 343   34478999


Q ss_pred             CCEeEe
Q 039018          162 LRSLNL  167 (181)
Q Consensus       162 L~~L~L  167 (181)
                      |+.||-
T Consensus       142 Lk~LD~  147 (175)
T PF14580_consen  142 LKVLDG  147 (175)
T ss_dssp             -SEETT
T ss_pred             hheeCC
Confidence            999873

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.17  E-value=4.4e-11  Score=100.56  Aligned_cols=155  Identities=19%  Similarity=0.254  Sum_probs=90.3

Q ss_pred             cCCCeeeccCcccccccCccccc----------cccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCC
Q 039018           10 SSLRYLDLSDNQFNSTIPEWISR----------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWA   78 (181)
Q Consensus        10 ~~L~~L~ls~n~i~~~~p~~~~~----------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n   78 (181)
                      .+|+.|++++|.++ .+|..+..          -...+|..+.  .+|+. ++++|.+. .+|..+.  .+|++|++++|
T Consensus       220 ~nL~~L~Ls~N~Lt-sLP~~l~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N  293 (754)
T PRK15370        220 GNIKTLYANSNQLT-SIPATLPDTIQEMELSINRITELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDN  293 (754)
T ss_pred             cCCCEEECCCCccc-cCChhhhccccEEECcCCccCcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCC
Confidence            46788888888777 45543321          0112333332  35666 77777777 5665543  47788888877


Q ss_pred             cccccchh----Hhhhcc------CCC--CCCCCccEEEcccccceeecCchhhccccccc-ccccc--------cCCcc
Q 039018           79 NKSQEILE----IFHSFS------RDN--WTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS--------ILNLL  137 (181)
Q Consensus        79 ~~~~~~~~----~~~~~~------~~~--~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n--------~l~~L  137 (181)
                      .+.. +|.    .+..+-      ..+  ....+|+.|++++|.++ .+|..+.  ++|+. .+.+|        ..++|
T Consensus       294 ~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp~~L  369 (754)
T PRK15370        294 SIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQITVLPETLPPTI  369 (754)
T ss_pred             cccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCccc-cCChhhc--CcccEEECCCCCCCcCChhhcCCc
Confidence            7653 222    111110      000  11245777777777776 4565443  45555 34444        23467


Q ss_pred             cEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCC
Q 039018          138 RITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGS  179 (181)
Q Consensus       138 ~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~  179 (181)
                      +.|++++|.++ .+|..+ .  ..|+.|++++|.++ .+|++
T Consensus       370 ~~LdLs~N~Lt-~LP~~l-~--~sL~~LdLs~N~L~-~LP~s  406 (754)
T PRK15370        370 TTLDVSRNALT-NLPENL-P--AALQIMQASRNNLV-RLPES  406 (754)
T ss_pred             CEEECCCCcCC-CCCHhH-H--HHHHHHhhccCCcc-cCchh
Confidence            88888888888 677766 3  35788888888888 67754

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.16  E-value=2.7e-12  Score=95.36  Aligned_cols=133  Identities=22%  Similarity=0.252  Sum_probs=88.9

Q ss_pred             CCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccch
Q 039018            7 ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEIL   85 (181)
Q Consensus         7 ~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~   85 (181)
                      -.|+.|+.+|+|+|.|+            .+.+++.-.+.++. ++++|.+. .+ +++..+++|+.||+++|.+.....
T Consensus       281 dTWq~LtelDLS~N~I~------------~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~~~G  346 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLIT------------QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAECVG  346 (490)
T ss_pred             chHhhhhhccccccchh------------hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhHhhhh
Confidence            34566777777777776            34445555667777 77777776 33 236677777777777776653221


Q ss_pred             hHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccC-CChhHHHhcccCCE
Q 039018           86 EIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGV-LPAELVTDLVALRS  164 (181)
Q Consensus        86 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~-~p~~~~~~l~~L~~  164 (181)
                        ++      .++.+++.|.++.|.+.     .+..+..         +.+|..||+++|+|..- -...+ +++|.|.+
T Consensus       347 --wh------~KLGNIKtL~La~N~iE-----~LSGL~K---------LYSLvnLDl~~N~Ie~ldeV~~I-G~LPCLE~  403 (490)
T KOG1259|consen  347 --WH------LKLGNIKTLKLAQNKIE-----TLSGLRK---------LYSLVNLDLSSNQIEELDEVNHI-GNLPCLET  403 (490)
T ss_pred             --hH------hhhcCEeeeehhhhhHh-----hhhhhHh---------hhhheeccccccchhhHHHhccc-ccccHHHH
Confidence              11      46677777777777764     2222222         66799999999999731 12356 89999999


Q ss_pred             eEecCCcccccCC
Q 039018          165 LNLFHNHFKEKFP  177 (181)
Q Consensus       165 L~L~~n~l~~~~p  177 (181)
                      +.|.+|.+++ +|
T Consensus       404 l~L~~NPl~~-~v  415 (490)
T KOG1259|consen  404 LRLTGNPLAG-SV  415 (490)
T ss_pred             HhhcCCCccc-cc
Confidence            9999999984 44

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.15  E-value=2e-12  Score=98.80  Aligned_cols=58  Identities=24%  Similarity=0.300  Sum_probs=30.5

Q ss_pred             CeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcC-CCccc
Q 039018           13 RYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLS-WANKS   81 (181)
Q Consensus        13 ~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~-~n~~~   81 (181)
                      ..++|..|+|+ .+|+          .+|+.+++|+. +++.|.++..-|+.|.++.++..|-+. +|+|+
T Consensus        70 veirLdqN~I~-~iP~----------~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~  129 (498)
T KOG4237|consen   70 VEIRLDQNQIS-SIPP----------GAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT  129 (498)
T ss_pred             eEEEeccCCcc-cCCh----------hhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence            34555556655 4443          33555556655 666666665555555555555444332 25444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.15  E-value=6.5e-12  Score=96.04  Aligned_cols=18  Identities=39%  Similarity=0.425  Sum_probs=10.1

Q ss_pred             CCCCcCCCeeeccCcccc
Q 039018            6 PENLSSLRYLDLSDNQFN   23 (181)
Q Consensus         6 ~~~l~~L~~L~ls~n~i~   23 (181)
                      +..+++|+.|++++|.+.
T Consensus        77 l~~~~~L~~L~l~~~~~~   94 (319)
T cd00116          77 LTKGCGLQELDLSDNALG   94 (319)
T ss_pred             HHhcCceeEEEccCCCCC
Confidence            334556666666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.15  E-value=1.3e-12  Score=108.66  Aligned_cols=158  Identities=30%  Similarity=0.473  Sum_probs=80.9

Q ss_pred             CCCeeeccCcccccccCccccc------------cccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCC
Q 039018           11 SLRYLDLSDNQFNSTIPEWISR------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSW   77 (181)
Q Consensus        11 ~L~~L~ls~n~i~~~~p~~~~~------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~   77 (181)
                      +|++++++.|.+. .+|++++.            ....+|..+..+.+|+. .+..|.++ .+|.....+++|++|++..
T Consensus       242 nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~  319 (1081)
T KOG0618|consen  242 NLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQS  319 (1081)
T ss_pred             cceeeecchhhhh-cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehh
Confidence            4555555555555 44444433            11244455555666666 66666666 5566566666666666666


Q ss_pred             CcccccchhHhhhccCCCCCC-CCccEEEcccccceeecCch-hhccccccc-ccccc-----------cCCcccEEEcc
Q 039018           78 ANKSQEILEIFHSFSRDNWTL-RSLQILDIACNNLSGAIPAC-ISNSSARKE-VGYTS-----------ILNLLRITDRS  143 (181)
Q Consensus        78 n~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~i~~~~p~~-~~~~~~l~~-~~~~n-----------~l~~L~~l~l~  143 (181)
                      |.+. ..|+.+-      ... ..+..++.+.|++. .+|.. =..+..|+. ++.+|           +..+|++|+++
T Consensus       320 N~L~-~lp~~~l------~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLs  391 (1081)
T KOG0618|consen  320 NNLP-SLPDNFL------AVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLS  391 (1081)
T ss_pred             cccc-ccchHHH------hhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeec
Confidence            6654 3333221      001 11222222222222 11100 001111222 11222           45557888888


Q ss_pred             CCccccCCChhHHHhcccCCEeEecCCcccccCCCCC
Q 039018          144 KNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI  180 (181)
Q Consensus       144 ~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i  180 (181)
                      +|++. .+|...+.+++.|+.|+||+|.++ .+|..+
T Consensus       392 yNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tv  426 (1081)
T KOG0618|consen  392 YNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTV  426 (1081)
T ss_pred             ccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHH
Confidence            88877 667666677888888888888877 676543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.11  E-value=1.1e-11  Score=94.87  Aligned_cols=155  Identities=23%  Similarity=0.214  Sum_probs=78.9

Q ss_pred             CCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCC---CcEEEcCCCcccc
Q 039018            7 ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLRE---PRSISLSWANKSQ   82 (181)
Q Consensus         7 ~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~---L~~L~l~~n~~~~   82 (181)
                      ...+.++.++++++.+.+ .+..+    ..++..+..+.+|+. ++++|.+....+..+..+.+   |+.|++++|.+..
T Consensus        48 ~~~~~l~~l~l~~~~~~~-~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~  122 (319)
T cd00116          48 RPQPSLKELCLSLNETGR-IPRGL----QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD  122 (319)
T ss_pred             hhCCCceEEeccccccCC-cchHH----HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch
Confidence            344456666666665542 11111    123344555667777 77777776444444444443   7777777776653


Q ss_pred             c----chhHhhhccCCCCCC-CCccEEEccccccee----ecCchhhccccccc-ccccc---------------cCCcc
Q 039018           83 E----ILEIFHSFSRDNWTL-RSLQILDIACNNLSG----AIPACISNSSARKE-VGYTS---------------ILNLL  137 (181)
Q Consensus        83 ~----~~~~~~~~~~~~~~~-~~L~~L~l~~n~i~~----~~p~~~~~~~~l~~-~~~~n---------------~l~~L  137 (181)
                      .    ....+       ..+ ++|+.+++++|.+++    .++..+..+++|++ .+.+|               ..++|
T Consensus       123 ~~~~~l~~~l-------~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L  195 (319)
T cd00116         123 RGLRLLAKGL-------KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNL  195 (319)
T ss_pred             HHHHHHHHHH-------HhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCC
Confidence            1    12223       344 666777777666652    12233444445555 33333               12256


Q ss_pred             cEEEccCCccccCCChhH---HHhcccCCEeEecCCccc
Q 039018          138 RITDRSKNNFSGVLPAEL---VTDLVALRSLNLFHNHFK  173 (181)
Q Consensus       138 ~~l~l~~n~~~~~~p~~~---~~~l~~L~~L~L~~n~l~  173 (181)
                      ++|++++|.+.+.....+   +..+++|+.|++++|.++
T Consensus       196 ~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         196 EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             CEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            666666666543221111   134455666666666655

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.09  E-value=8.2e-11  Score=92.84  Aligned_cols=151  Identities=30%  Similarity=0.384  Sum_probs=79.7

Q ss_pred             CCCCCCCCc-CCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCc
Q 039018            2 IPNGPENLS-SLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWAN   79 (181)
Q Consensus         2 lp~~~~~l~-~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~   79 (181)
                      ||+....++ +|+.|++++|++.            .+|..++.++.|+. ++++|++. .+|...+..++|+.|++++|.
T Consensus       131 i~~~~~~~~~nL~~L~l~~N~i~------------~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~  197 (394)
T COG4886         131 IPPLIGLLKSNLKELDLSDNKIE------------SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNK  197 (394)
T ss_pred             Cccccccchhhcccccccccchh------------hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCc
Confidence            344444442 5555555555555            22223455555555 55555555 444433455555555555555


Q ss_pred             ccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc----------cCCcccEEEccCCccc
Q 039018           80 KSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS----------ILNLLRITDRSKNNFS  148 (181)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n----------~l~~L~~l~l~~n~~~  148 (181)
                      +. .+|...       .....|+.+.+++|.+. ..+..+.....+.. .+..|          .++.++++++++|.++
T Consensus       198 i~-~l~~~~-------~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         198 IS-DLPPEI-------ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             cc-cCchhh-------hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchhccccccceecccccccc
Confidence            54 333332       23334555555555322 33333333333333 11111          4555888888888888


Q ss_pred             cCCChhHHHhcccCCEeEecCCcccccCC
Q 039018          149 GVLPAELVTDLVALRSLNLFHNHFKEKFP  177 (181)
Q Consensus       149 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~p  177 (181)
                       .++. + +.+.+++.|++++|.++..+|
T Consensus       269 -~i~~-~-~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         269 -SISS-L-GSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             -cccc-c-cccCccCEEeccCccccccch
Confidence             5554 5 788888888888888875444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.02  E-value=7.4e-12  Score=99.61  Aligned_cols=141  Identities=28%  Similarity=0.381  Sum_probs=85.8

Q ss_pred             CCeeeccCcccccccCccccc------------cccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCC
Q 039018           12 LRYLDLSDNQFNSTIPEWISR------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWA   78 (181)
Q Consensus        12 L~~L~ls~n~i~~~~p~~~~~------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n   78 (181)
                      -...|++.|++. .+|..++.            -...+|..++.+..|.. +++.|+++ .+|..++.++ |+.|-+++|
T Consensus        77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhhhccccccc-cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence            345778888877 45544332            01134444555555555 55555555 4555554443 445555554


Q ss_pred             cccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHh
Q 039018           79 NKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTD  158 (181)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~  158 (181)
                      ++. .+|+.+       +...+|..+|.+.|.+. .+|..++.            +.+|+.+++..|++. .+|++. ..
T Consensus       154 kl~-~lp~~i-------g~~~tl~~ld~s~nei~-slpsql~~------------l~slr~l~vrRn~l~-~lp~El-~~  210 (722)
T KOG0532|consen  154 KLT-SLPEEI-------GLLPTLAHLDVSKNEIQ-SLPSQLGY------------LTSLRDLNVRRNHLE-DLPEEL-CS  210 (722)
T ss_pred             ccc-cCCccc-------ccchhHHHhhhhhhhhh-hchHHhhh------------HHHHHHHHHhhhhhh-hCCHHH-hC
Confidence            443 344444       44455555555555554 55555554            555888999999998 889888 64


Q ss_pred             cccCCEeEecCCcccccCCCCC
Q 039018          159 LVALRSLNLFHNHFKEKFPGSI  180 (181)
Q Consensus       159 l~~L~~L~L~~n~l~~~~p~~i  180 (181)
                      + .|..||+++|+++ .||-.|
T Consensus       211 L-pLi~lDfScNkis-~iPv~f  230 (722)
T KOG0532|consen  211 L-PLIRLDFSCNKIS-YLPVDF  230 (722)
T ss_pred             C-ceeeeecccCcee-ecchhh
Confidence            4 5899999999999 888665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.01  E-value=6e-10  Score=77.99  Aligned_cols=109  Identities=27%  Similarity=0.280  Sum_probs=41.5

Q ss_pred             ccccccchh-ccccccccCCCCcccC-CCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCch
Q 039018           41 LGNLTSLKH-SISYNVLEGKLPTSFG-RLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPAC  118 (181)
Q Consensus        41 l~~l~~L~~-~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~  118 (181)
                      +.+...+++ ++++|.++. + +.++ .+.+|+.|++++|.+...  +.+       ..+.+|+.|++++|+++ .+.+.
T Consensus        15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l-------~~L~~L~~L~L~~N~I~-~i~~~   82 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGL-------PGLPRLKTLDLSNNRIS-SISEG   82 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S----TT-----------TT--EEE--SS----S-CHH
T ss_pred             ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCc-------cChhhhhhcccCCCCCC-ccccc
Confidence            345567788 999999983 4 3465 588999999999998743  346       78899999999999998 55544


Q ss_pred             hh-cccccccccccccCCcccEEEccCCccccC-CChhHHHhcccCCEeEecCCcccc
Q 039018          119 IS-NSSARKEVGYTSILNLLRITDRSKNNFSGV-LPAELVTDLVALRSLNLFHNHFKE  174 (181)
Q Consensus       119 ~~-~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~-~p~~~~~~l~~L~~L~L~~n~l~~  174 (181)
                      +. .            +++|+.|++++|+|... --..+ +.+++|+.|+|.+|+++.
T Consensus        83 l~~~------------lp~L~~L~L~~N~I~~l~~l~~L-~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   83 LDKN------------LPNLQELYLSNNKISDLNELEPL-SSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             HHHH-------------TT--EEE-TTS---SCCCCGGG-GG-TT--EEE-TT-GGGG
T ss_pred             hHHh------------CCcCCEEECcCCcCCChHHhHHH-HcCCCcceeeccCCcccc
Confidence            43 4            44599999999999742 12345 789999999999999983

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.99  E-value=2.1e-09  Score=90.57  Aligned_cols=142  Identities=20%  Similarity=0.238  Sum_probs=74.2

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK   80 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (181)
                      ||+.+.  ++|+.|++++|+++ .+|.              .+++|+. ++++|.++ .+|..   .++|+.|+++.|.+
T Consensus       216 LP~~l~--~~L~~L~L~~N~Lt-~LP~--------------lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L  274 (788)
T PRK15387        216 LPDCLP--AHITTLVIPDNNLT-SLPA--------------LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPL  274 (788)
T ss_pred             CCcchh--cCCCEEEccCCcCC-CCCC--------------CCCCCcEEEecCCccC-cccCc---ccccceeeccCCch
Confidence            555553  36777777777776 3442              1345666 67777777 44532   34566666666655


Q ss_pred             cccchhH---hhhcc------CC-CCCCCCccEEEcccccceeecCchhhccccccccccccc-------CCcccEEEcc
Q 039018           81 SQEILEI---FHSFS------RD-NWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSI-------LNLLRITDRS  143 (181)
Q Consensus        81 ~~~~~~~---~~~~~------~~-~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~-------l~~L~~l~l~  143 (181)
                      .. +|..   +..+-      .. ....++|+.|++++|+++ .+|.....+..|  .+.+|.       ..+|+.|+++
T Consensus       275 ~~-Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~-~Lp~lp~~L~~L--~Ls~N~L~~LP~lp~~Lq~LdLS  350 (788)
T PRK15387        275 TH-LPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA-SLPALPSELCKL--WAYNNQLTSLPTLPSGLQELSVS  350 (788)
T ss_pred             hh-hhhchhhcCEEECcCCccccccccccccceeECCCCccc-cCCCCccccccc--ccccCccccccccccccceEecC
Confidence            42 2221   11000      00 012356888888888887 455433322222  233331       1357888888


Q ss_pred             CCccccCCChhHHHhcccCCEeEecCCccc
Q 039018          144 KNNFSGVLPAELVTDLVALRSLNLFHNHFK  173 (181)
Q Consensus       144 ~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~  173 (181)
                      +|+++ .+|..    ..+|+.|++++|.++
T Consensus       351 ~N~Ls-~LP~l----p~~L~~L~Ls~N~L~  375 (788)
T PRK15387        351 DNQLA-SLPTL----PSELYKLWAYNNRLT  375 (788)
T ss_pred             CCccC-CCCCC----Ccccceehhhccccc
Confidence            88887 55632    123344444444444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.98  E-value=4.6e-10  Score=88.61  Aligned_cols=148  Identities=28%  Similarity=0.397  Sum_probs=114.5

Q ss_pred             CCCCcCCCeeeccCcccccccCccccccccccCCcccccc-cchh-ccccccccCCCCcccCCCCCCcEEEcCCCccccc
Q 039018            6 PENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLT-SLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQE   83 (181)
Q Consensus         6 ~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~-~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~   83 (181)
                      +..++.++.+++.+|.+.            .++....... +|+. ++++|.+. .+|..++.+++|+.|+++.|.+. .
T Consensus       112 ~~~~~~l~~L~l~~n~i~------------~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~  177 (394)
T COG4886         112 LLELTNLTSLDLDNNNIT------------DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-D  177 (394)
T ss_pred             hhcccceeEEecCCcccc------------cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-h
Confidence            344567888899999988            3444455564 8888 99999999 67777899999999999999987 4


Q ss_pred             chhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc----------cCCcccEEEccCCccccCCC
Q 039018           84 ILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS----------ILNLLRITDRSKNNFSGVLP  152 (181)
Q Consensus        84 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n----------~l~~L~~l~l~~n~~~~~~p  152 (181)
                      +|...       +....|..+++++|+++ .+|........|.+ ...+|          .+..+..+.+.+|++. ..+
T Consensus       178 l~~~~-------~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~  248 (394)
T COG4886         178 LPKLL-------SNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLP  248 (394)
T ss_pred             hhhhh-------hhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-ecc
Confidence            55554       57899999999999998 88887666666766 33333          5566777778888887 446


Q ss_pred             hhHHHhcccCCEeEecCCcccccCCC
Q 039018          153 AELVTDLVALRSLNLFHNHFKEKFPG  178 (181)
Q Consensus       153 ~~~~~~l~~L~~L~L~~n~l~~~~p~  178 (181)
                      ..+ +.+++++.|++++|.++ .++.
T Consensus       249 ~~~-~~l~~l~~L~~s~n~i~-~i~~  272 (394)
T COG4886         249 ESI-GNLSNLETLDLSNNQIS-SISS  272 (394)
T ss_pred             chh-ccccccceecccccccc-cccc
Confidence            666 88999999999999998 5553

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.90  E-value=1.1e-09  Score=63.57  Aligned_cols=60  Identities=33%  Similarity=0.499  Sum_probs=34.5

Q ss_pred             CccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcc
Q 039018          100 SLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHF  172 (181)
Q Consensus       100 ~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l  172 (181)
                      +|+.+++++|+++..-++.|..++            +|+++++++|.++ .++...|.++++|++|++++|++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~------------~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLP------------NLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGT------------TESEEEETSSSES-EEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCC------------CCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCcC
Confidence            456666666666633334555533            3666666666666 33333336677777777776654

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.85  E-value=4.2e-09  Score=61.04  Aligned_cols=61  Identities=33%  Similarity=0.369  Sum_probs=42.1

Q ss_pred             CCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCcc
Q 039018           68 REPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNF  147 (181)
Q Consensus        68 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~  147 (181)
                      ++|++|++++|.+....+..|       ..+++|+.+++++|.++..-|+.|..++            +|+++++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f-------~~l~~L~~L~l~~N~l~~i~~~~f~~l~------------~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSF-------SNLPNLETLDLSNNNLTSIPPDAFSNLP------------NLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTT-------TTGTTESEEEETSSSESEEETTTTTTST------------TESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHH-------cCCCCCCEeEccCCccCccCHHHHcCCC------------CCCEEeCcCCcC
Confidence            456777777777775555666       7777777778777777755556666644            377777777764

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.73  E-value=5.9e-09  Score=77.90  Aligned_cols=108  Identities=21%  Similarity=0.245  Sum_probs=83.6

Q ss_pred             cccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCch
Q 039018           40 GLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPAC  118 (181)
Q Consensus        40 ~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~  118 (181)
                      .+...+.|.+ ++++|.+. .+.+++.-.++++.|++++|.+...  +.+       ..+.+|+.||+++|.++ ..-++
T Consensus       279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nL-------a~L~~L~~LDLS~N~Ls-~~~Gw  347 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNL-------AELPQLQLLDLSGNLLA-ECVGW  347 (490)
T ss_pred             ecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhh-------hhcccceEeecccchhH-hhhhh
Confidence            4445677778 99999998 7888888899999999999988633  225       67889999999999887 54444


Q ss_pred             hhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCccc
Q 039018          119 ISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK  173 (181)
Q Consensus       119 ~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~  173 (181)
                      --.            +.+.++|.++.|.+. .+ ..+ .++=+|.+||+++|++.
T Consensus       348 h~K------------LGNIKtL~La~N~iE-~L-SGL-~KLYSLvnLDl~~N~Ie  387 (490)
T KOG1259|consen  348 HLK------------LGNIKTLKLAQNKIE-TL-SGL-RKLYSLVNLDLSSNQIE  387 (490)
T ss_pred             Hhh------------hcCEeeeehhhhhHh-hh-hhh-Hhhhhheeccccccchh
Confidence            333            444889999999987 33 245 77888999999999985

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.70  E-value=2.4e-09  Score=82.31  Aligned_cols=107  Identities=23%  Similarity=0.292  Sum_probs=80.4

Q ss_pred             ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEccc-ccceeecC-chhhccccccc
Q 039018           50 SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIAC-NNLSGAIP-ACISNSSARKE  127 (181)
Q Consensus        50 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-n~i~~~~p-~~~~~~~~l~~  127 (181)
                      ++..|.+....+..|+.+.+|+.||+++|.|+...|++|       ..+.++..|-+.+ |+|+ .+| +.|+.+..   
T Consensus        73 rLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF-------~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~s---  141 (498)
T KOG4237|consen   73 RLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAF-------KGLASLLSLVLYGNNKIT-DLPKGAFGGLSS---  141 (498)
T ss_pred             EeccCCcccCChhhccchhhhceecccccchhhcChHhh-------hhhHhhhHHHhhcCCchh-hhhhhHhhhHHH---
Confidence            588999996667789999999999999999999999999       8888877776555 8998 555 56777554   


Q ss_pred             ccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCC
Q 039018          128 VGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPG  178 (181)
Q Consensus       128 ~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~  178 (181)
                               ++.|.+.-|++. .+++..|..+++|+.|.+-+|.+. .+++
T Consensus       142 ---------lqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q-~i~~  181 (498)
T KOG4237|consen  142 ---------LQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQ-SICK  181 (498)
T ss_pred             ---------HHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhh-hhcc
Confidence                     666666667766 555555577777777777777665 4443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.57  E-value=6.2e-09  Score=78.72  Aligned_cols=161  Identities=19%  Similarity=0.155  Sum_probs=102.1

Q ss_pred             CCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCC-------------cccCCCCCC
Q 039018            5 GPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLP-------------TSFGRLREP   70 (181)
Q Consensus         5 ~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~-------------~~~~~l~~L   70 (181)
                      ++.++++|+++|||+|-+....++.+.       .-+.++..|++ ++.+|.+...-.             ...+.-++|
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~-------~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~L  159 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLE-------ELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKL  159 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHH-------HHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcce
Confidence            456677999999999999866555442       33556778888 888888763211             223445678


Q ss_pred             cEEEcCCCcccccchh----Hhhh---------------------ccCCCCCCCCccEEEccccccee----ecCchhhc
Q 039018           71 RSISLSWANKSQEILE----IFHS---------------------FSRDNWTLRSLQILDIACNNLSG----AIPACISN  121 (181)
Q Consensus        71 ~~L~l~~n~~~~~~~~----~~~~---------------------~~~~~~~~~~L~~L~l~~n~i~~----~~p~~~~~  121 (181)
                      +++..++|++......    .|+.                     +...+..+++|+.||+..|.++.    .+...+..
T Consensus       160 rv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s  239 (382)
T KOG1909|consen  160 RVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSS  239 (382)
T ss_pred             EEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcc
Confidence            8888888876422211    1110                     11233567888888888887762    24445666


Q ss_pred             cccccccccc-c----------------cCCcccEEEccCCccccC----CChhHHHhcccCCEeEecCCccc
Q 039018          122 SSARKEVGYT-S----------------ILNLLRITDRSKNNFSGV----LPAELVTDLVALRSLNLFHNHFK  173 (181)
Q Consensus       122 ~~~l~~~~~~-n----------------~l~~L~~l~l~~n~~~~~----~p~~~~~~l~~L~~L~L~~n~l~  173 (181)
                      +++|+++.++ +                ..++|+.+.+.+|.|+..    +...+ ...+.|..|+|++|.+.
T Consensus       240 ~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~-~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  240 WPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACM-AEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             cchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHH-hcchhhHHhcCCccccc
Confidence            6776663222 1                666788888888888742    22234 45677888888888873

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.51  E-value=1.1e-07  Score=81.62  Aligned_cols=130  Identities=22%  Similarity=0.233  Sum_probs=92.3

Q ss_pred             CCcCCCeeeccCcccccccCccccccccccCCcccccccchh-cccccc--ccCCCCcccCCCCCCcEEEcCCCcccccc
Q 039018            8 NLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNV--LEGKLPTSFGRLREPRSISLSWANKSQEI   84 (181)
Q Consensus         8 ~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~--~~~~~~~~~~~l~~L~~L~l~~n~~~~~~   84 (181)
                      ++...+.+.+.+|.+. .++           ... .++.|++ .+..|.  +.....+.|..++.|++||+++|.-.+.+
T Consensus       521 ~~~~~rr~s~~~~~~~-~~~-----------~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~L  587 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIE-HIA-----------GSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKL  587 (889)
T ss_pred             chhheeEEEEeccchh-hcc-----------CCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcC
Confidence            4456677777777776 222           222 2335666 566664  44233444778999999999998877789


Q ss_pred             hhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCE
Q 039018           85 LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRS  164 (181)
Q Consensus        85 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~  164 (181)
                      |+.+       +.+.+|++|+++.+.++ .+|..+++++.            |.+|++..+.....+|... ..+.+|++
T Consensus       588 P~~I-------~~Li~LryL~L~~t~I~-~LP~~l~~Lk~------------L~~Lnl~~~~~l~~~~~i~-~~L~~Lr~  646 (889)
T KOG4658|consen  588 PSSI-------GELVHLRYLDLSDTGIS-HLPSGLGNLKK------------LIYLNLEVTGRLESIPGIL-LELQSLRV  646 (889)
T ss_pred             ChHH-------hhhhhhhcccccCCCcc-ccchHHHHHHh------------hheeccccccccccccchh-hhcccccE
Confidence            9999       99999999999999998 99999998655            7778877766554444444 66788888


Q ss_pred             eEecCCc
Q 039018          165 LNLFHNH  171 (181)
Q Consensus       165 L~L~~n~  171 (181)
                      |.+....
T Consensus       647 L~l~~s~  653 (889)
T KOG4658|consen  647 LRLPRSA  653 (889)
T ss_pred             EEeeccc
Confidence            8776543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.49  E-value=1.1e-08  Score=77.35  Aligned_cols=25  Identities=40%  Similarity=0.474  Sum_probs=18.0

Q ss_pred             CCCCcCCCeeeccCcccccccCccc
Q 039018            6 PENLSSLRYLDLSDNQFNSTIPEWI   30 (181)
Q Consensus         6 ~~~l~~L~~L~ls~n~i~~~~p~~~   30 (181)
                      +..+..++.++|++|.+.....+++
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i   50 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAI   50 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHH
Confidence            3456788999999999875544433

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.45  E-value=4.3e-09  Score=86.47  Aligned_cols=126  Identities=25%  Similarity=0.257  Sum_probs=73.1

Q ss_pred             CCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhH-h
Q 039018           11 SLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEI-F   88 (181)
Q Consensus        11 ~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~   88 (181)
                      .|.+.++++|.+.            .+..++.-++.++. +++.|++. ... .+..+++|++||+++|.+. .+|.. .
T Consensus       165 ~L~~a~fsyN~L~------------~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~  229 (1096)
T KOG1859|consen  165 KLATASFSYNRLV------------LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSM  229 (1096)
T ss_pred             hHhhhhcchhhHH------------hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccch
Confidence            3445555666555            33344455566666 67777766 332 5666777777777777654 23221 1


Q ss_pred             hhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEec
Q 039018           89 HSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLF  168 (181)
Q Consensus        89 ~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~  168 (181)
                             ..+. |+.|.+.+|.++ .+- .+.+            +.+|+.||+++|-+.+..-=.....+..|+.|.|.
T Consensus       230 -------~gc~-L~~L~lrnN~l~-tL~-gie~------------LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~Le  287 (1096)
T KOG1859|consen  230 -------VGCK-LQLLNLRNNALT-TLR-GIEN------------LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLE  287 (1096)
T ss_pred             -------hhhh-heeeeecccHHH-hhh-hHHh------------hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhc
Confidence                   1222 666777777665 221 2333            44478888888887753222223667778888888


Q ss_pred             CCccc
Q 039018          169 HNHFK  173 (181)
Q Consensus       169 ~n~l~  173 (181)
                      +|.+.
T Consensus       288 GNPl~  292 (1096)
T KOG1859|consen  288 GNPLC  292 (1096)
T ss_pred             CCccc
Confidence            88774

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.44  E-value=1.3e-07  Score=50.85  Aligned_cols=39  Identities=36%  Similarity=0.462  Sum_probs=28.4

Q ss_pred             cccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCC
Q 039018          136 LLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFP  177 (181)
Q Consensus       136 ~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p  177 (181)
                      +|++|++++|+|+ .+|..+ +.+++|+.|++++|+++ +++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l-~~l~~L~~L~l~~N~i~-~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPEL-SNLPNLETLNLSNNPIS-DIS   40 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHG-TTCTTSSEEEETSSCCS-BEG
T ss_pred             cceEEEccCCCCc-ccCchH-hCCCCCCEEEecCCCCC-CCc
Confidence            4778888888887 677666 78888888888888887 554

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.40  E-value=2.3e-08  Score=82.37  Aligned_cols=144  Identities=25%  Similarity=0.299  Sum_probs=101.9

Q ss_pred             CCCCCCCcCCCeeeccCccccc---------ccCccccc------------cccccCCcccccccchh-ccccccccCCC
Q 039018            3 PNGPENLSSLRYLDLSDNQFNS---------TIPEWISR------------INCTISSGLGNLTSLKH-SISYNVLEGKL   60 (181)
Q Consensus         3 p~~~~~l~~L~~L~ls~n~i~~---------~~p~~~~~------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~   60 (181)
                      |-.|+.++.|++|.+.++.+..         ++..-||.            -.+.+..++ ....|.+ +.++|.+. ..
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~-~m  179 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV-LM  179 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH-hH
Confidence            5567888999999999998752         11111111            001111111 1345666 78888887 67


Q ss_pred             CcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCch-hhcccccccccccccCCcccE
Q 039018           61 PTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPAC-ISNSSARKEVGYTSILNLLRI  139 (181)
Q Consensus        61 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~-~~~~~~l~~~~~~n~l~~L~~  139 (181)
                      +.++.-++.++.|++++|++....  .+       ..+.+|..||+++|.+. .+|.. ...            + .|+.
T Consensus       180 D~SLqll~ale~LnLshNk~~~v~--~L-------r~l~~LkhLDlsyN~L~-~vp~l~~~g------------c-~L~~  236 (1096)
T KOG1859|consen  180 DESLQLLPALESLNLSHNKFTKVD--NL-------RRLPKLKHLDLSYNCLR-HVPQLSMVG------------C-KLQL  236 (1096)
T ss_pred             HHHHHHHHHhhhhccchhhhhhhH--HH-------Hhcccccccccccchhc-cccccchhh------------h-hhee
Confidence            788888899999999999987443  66       68899999999999987 55542 222            2 2899


Q ss_pred             EEccCCccccCCChhHHHhcccCCEeEecCCcccc
Q 039018          140 TDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE  174 (181)
Q Consensus       140 l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~  174 (181)
                      |++.+|.++ .+- .+ .++.+|+.||+++|.+.+
T Consensus       237 L~lrnN~l~-tL~-gi-e~LksL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  237 LNLRNNALT-TLR-GI-ENLKSLYGLDLSYNLLSE  268 (1096)
T ss_pred             eeecccHHH-hhh-hH-HhhhhhhccchhHhhhhc
Confidence            999999998 443 56 899999999999999874

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.36  E-value=4.6e-08  Score=65.16  Aligned_cols=104  Identities=21%  Similarity=0.208  Sum_probs=70.4

Q ss_pred             ccccccccCCCC---cccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccc
Q 039018           50 SISYNVLEGKLP---TSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARK  126 (181)
Q Consensus        50 ~l~~n~~~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~  126 (181)
                      +++.|++. .++   ..+....+|+..++++|.+. .+|..|.      .+.+.++.+++.+|.++ .+|.++..|+.  
T Consensus        33 dLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft------~kf~t~t~lNl~~neis-dvPeE~Aam~a--  101 (177)
T KOG4579|consen   33 DLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFT------IKFPTATTLNLANNEIS-DVPEELAAMPA--  101 (177)
T ss_pred             ccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHh------hccchhhhhhcchhhhh-hchHHHhhhHH--
Confidence            45555544 222   33445566777788888776 4555552      45567888888888887 78887877555  


Q ss_pred             cccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCC
Q 039018          127 EVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFP  177 (181)
Q Consensus       127 ~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p  177 (181)
                                |+.+++++|.+. ..|+.+ ..+.++..|+...|.+. +||
T Consensus       102 ----------Lr~lNl~~N~l~-~~p~vi-~~L~~l~~Lds~~na~~-eid  139 (177)
T KOG4579|consen  102 ----------LRSLNLRFNPLN-AEPRVI-APLIKLDMLDSPENARA-EID  139 (177)
T ss_pred             ----------hhhcccccCccc-cchHHH-HHHHhHHHhcCCCCccc-cCc
Confidence                      777888888887 667777 55777778887777765 444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.35  E-value=9.4e-08  Score=63.69  Aligned_cols=90  Identities=23%  Similarity=0.257  Sum_probs=71.0

Q ss_pred             CCcEEEcCCCcccc--cchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCc
Q 039018           69 EPRSISLSWANKSQ--EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNN  146 (181)
Q Consensus        69 ~L~~L~l~~n~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~  146 (181)
                      .+..++++.+.+-+  ..+..+       .+..+|+..++++|.+. .+|..|...           .+.++++++++|+
T Consensus        28 E~h~ldLssc~lm~i~davy~l-------~~~~el~~i~ls~N~fk-~fp~kft~k-----------f~t~t~lNl~~ne   88 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYML-------SKGYELTKISLSDNGFK-KFPKKFTIK-----------FPTATTLNLANNE   88 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHH-------hCCceEEEEecccchhh-hCCHHHhhc-----------cchhhhhhcchhh
Confidence            35567777776542  223334       66788999999999998 888877652           3458999999999


Q ss_pred             cccCCChhHHHhcccCCEeEecCCcccccCCCCC
Q 039018          147 FSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI  180 (181)
Q Consensus       147 ~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i  180 (181)
                      ++ .+|.++ +.++.|+.++++.|.+. ..|+.|
T Consensus        89 is-dvPeE~-Aam~aLr~lNl~~N~l~-~~p~vi  119 (177)
T KOG4579|consen   89 IS-DVPEEL-AAMPALRSLNLRFNPLN-AEPRVI  119 (177)
T ss_pred             hh-hchHHH-hhhHHhhhcccccCccc-cchHHH
Confidence            99 899997 99999999999999998 777654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=2.3e-07  Score=72.34  Aligned_cols=67  Identities=25%  Similarity=0.247  Sum_probs=37.2

Q ss_pred             CCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCccc-CCCCCCcEEEcCCCcccc
Q 039018            7 ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSF-GRLREPRSISLSWANKSQ   82 (181)
Q Consensus         7 ~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~   82 (181)
                      ..|++++.||++.|-+..-.         .+..-...+++|+. .++.|.+.-...... ..+.+++.|.++.|.++.
T Consensus       143 k~~~~v~~LdLS~NL~~nw~---------~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~  211 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNWF---------PVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSW  211 (505)
T ss_pred             hhCCcceeecchhhhHHhHH---------HHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCH
Confidence            34667777777777655111         11222345667777 777777652221111 235677777777777653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.27  E-value=2.5e-07  Score=73.71  Aligned_cols=142  Identities=28%  Similarity=0.286  Sum_probs=81.9

Q ss_pred             CCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccc
Q 039018            6 PENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEI   84 (181)
Q Consensus         6 ~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~   84 (181)
                      +..+++|+.+++.+|.|.            .+...+..+.+|++ ++++|.++..  ..+..++.|+.|++++|.+... 
T Consensus        91 l~~~~~l~~l~l~~n~i~------------~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~-  155 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIE------------KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI-  155 (414)
T ss_pred             cccccceeeeeccccchh------------hcccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc-
Confidence            556677777888888877            22222456777777 7888777732  2355666677777777776522 


Q ss_pred             hhHhhhccCCCCCCCCccEEEcccccceeecCch-hhccccccc-ccccc------------------------------
Q 039018           85 LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPAC-ISNSSARKE-VGYTS------------------------------  132 (181)
Q Consensus        85 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~-~~~~~~l~~-~~~~n------------------------------  132 (181)
                       ..+       ..+..|+.+++++|++. .+... ...+..+.. ++.+|                              
T Consensus       156 -~~~-------~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l  226 (414)
T KOG0531|consen  156 -SGL-------ESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGL  226 (414)
T ss_pred             -cCC-------ccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCc
Confidence             222       34667777777777776 22221 344444444 33333                              


Q ss_pred             -cCCc--ccEEEccCCccccCCChhHHHhcccCCEeEecCCccc
Q 039018          133 -ILNL--LRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK  173 (181)
Q Consensus       133 -~l~~--L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~  173 (181)
                       ....  |+.+++++|++. .++..+ ..+.++..+++..|.+.
T Consensus       227 ~~~~~~~L~~l~l~~n~i~-~~~~~~-~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  227 NELVMLHLRELYLSGNRIS-RSPEGL-ENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             ccchhHHHHHHhcccCccc-cccccc-cccccccccchhhcccc
Confidence             1111  455666666665 333333 55666666666666554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.13  E-value=4.6e-07  Score=67.02  Aligned_cols=166  Identities=17%  Similarity=0.169  Sum_probs=99.4

Q ss_pred             CCcCCCeeeccCcccccccCccccc----------------ccc-----------ccCCcccccccchh-ccccccccCC
Q 039018            8 NLSSLRYLDLSDNQFNSTIPEWISR----------------INC-----------TISSGLGNLTSLKH-SISYNVLEGK   59 (181)
Q Consensus         8 ~l~~L~~L~ls~n~i~~~~p~~~~~----------------~~~-----------~l~~~l~~l~~L~~-~l~~n~~~~~   59 (181)
                      -+..+..+++|+|.|.....++++.                +++           .+.+.+-+|+.++. ++++|.+...
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            3567888999999987665555554                111           13334556788888 8888888766


Q ss_pred             CCccc----CCCCCCcEEEcCCCccccc----chhHhhhcc--CCCCCCCCccEEEcccccceeecCc-----hhhcccc
Q 039018           60 LPTSF----GRLREPRSISLSWANKSQE----ILEIFHSFS--RDNWTLRSLQILDIACNNLSGAIPA-----CISNSSA  124 (181)
Q Consensus        60 ~~~~~----~~l~~L~~L~l~~n~~~~~----~~~~~~~~~--~~~~~~~~L~~L~l~~n~i~~~~p~-----~~~~~~~  124 (181)
                      .|..+    +.-+.|.+|.+++|.+...    +..++-++.  .-+..-+.|+...+..|++. ..|.     .+.....
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~  186 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHEN  186 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcC
Confidence            66443    4557788888887765322    222221211  11134467777777777765 3332     1333334


Q ss_pred             ccc-ccccc----------------cCCcccEEEccCCccccC----CChhHHHhcccCCEeEecCCccccc
Q 039018          125 RKE-VGYTS----------------ILNLLRITDRSKNNFSGV----LPAELVTDLVALRSLNLFHNHFKEK  175 (181)
Q Consensus       125 l~~-~~~~n----------------~l~~L~~l~l~~n~~~~~----~p~~~~~~l~~L~~L~L~~n~l~~~  175 (181)
                      |++ -+.+|                .+.+|++||+..|-++-.    +...+ ..|+.|+.|.+.+|.++..
T Consensus       187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al-~~W~~lrEL~lnDClls~~  257 (388)
T COG5238         187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL-CEWNLLRELRLNDCLLSNE  257 (388)
T ss_pred             ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh-cccchhhhccccchhhccc
Confidence            444 33444                566788888888888732    22233 5677788888888877643

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.07  E-value=7e-07  Score=71.15  Aligned_cols=107  Identities=25%  Similarity=0.343  Sum_probs=58.6

Q ss_pred             ccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchh
Q 039018           41 LGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI  119 (181)
Q Consensus        41 l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~  119 (181)
                      +..++++.. ++.+|.+.. +...+..+++|++|++++|.+...-  .+       ..+..|+.|++++|.++ .+.. +
T Consensus        91 l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l-------~~l~~L~~L~l~~N~i~-~~~~-~  158 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GL-------STLTLLKELNLSGNLIS-DISG-L  158 (414)
T ss_pred             cccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--ch-------hhccchhhheeccCcch-hccC-C
Confidence            445555555 666666652 2222455666666666666655322  12       33444666666666664 2211 1


Q ss_pred             hcccccccccccccCCcccEEEccCCccccCCChh-HHHhcccCCEeEecCCccc
Q 039018          120 SNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAE-LVTDLVALRSLNLFHNHFK  173 (181)
Q Consensus       120 ~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~-~~~~l~~L~~L~L~~n~l~  173 (181)
                      ..            +..|+.+++++|++. .+... . ..+.+++.+.+..|.+.
T Consensus       159 ~~------------l~~L~~l~l~~n~i~-~ie~~~~-~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  159 ES------------LKSLKLLDLSYNRIV-DIENDEL-SELISLEELDLGGNSIR  199 (414)
T ss_pred             cc------------chhhhcccCCcchhh-hhhhhhh-hhccchHHHhccCCchh
Confidence            11            344777777777776 33431 2 56667777777777665

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.02  E-value=9.7e-06  Score=43.51  Aligned_cols=36  Identities=19%  Similarity=0.274  Sum_probs=18.9

Q ss_pred             CCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccce
Q 039018           69 EPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLS  112 (181)
Q Consensus        69 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~  112 (181)
                      +|++|++++|.+. .+|..+       .++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l-------~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPEL-------SNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHG-------TTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchH-------hCCCCCCEEEecCCCCC
Confidence            4556666666555 334445       55566666666665554

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=1e-06  Score=68.85  Aligned_cols=38  Identities=24%  Similarity=0.248  Sum_probs=23.7

Q ss_pred             CCcccEEEccCCccccCCC--hhHHHhcccCCEeEecCCccc
Q 039018          134 LNLLRITDRSKNNFSGVLP--AELVTDLVALRSLNLFHNHFK  173 (181)
Q Consensus       134 l~~L~~l~l~~n~~~~~~p--~~~~~~l~~L~~L~L~~n~l~  173 (181)
                      .++|++|+++.|++. ..+  ..+ ..+++|+.|....|.++
T Consensus       300 f~kL~~L~i~~N~I~-~w~sl~~l-~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  300 FPKLEYLNISENNIR-DWRSLNHL-RTLENLKHLRITLNYLN  339 (505)
T ss_pred             cccceeeecccCccc-cccccchh-hccchhhhhhccccccc
Confidence            566777777777775 322  234 45666667666666665

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.86  E-value=1.9e-05  Score=68.24  Aligned_cols=110  Identities=28%  Similarity=0.324  Sum_probs=83.5

Q ss_pred             ccchh-ccccccccCCCCcccCCCCCCcEEEcCCCc--ccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhc
Q 039018           45 TSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWAN--KSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISN  121 (181)
Q Consensus        45 ~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~--~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~  121 (181)
                      ...+. .+.+|.+. ..+.. ...++|++|-+..|.  +....++.|       ..++.|.+||+++|.-.+.+|..++.
T Consensus       523 ~~~rr~s~~~~~~~-~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff-------~~m~~LrVLDLs~~~~l~~LP~~I~~  593 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE-HIAGS-SENPKLRTLLLQRNSDWLLEISGEFF-------RSLPLLRVLDLSGNSSLSKLPSSIGE  593 (889)
T ss_pred             hheeEEEEeccchh-hccCC-CCCCccceEEEeecchhhhhcCHHHH-------hhCcceEEEECCCCCccCcCChHHhh
Confidence            44455 55566665 44443 234579999888886  444445557       78999999999998665699999998


Q ss_pred             ccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCC
Q 039018          122 SSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFP  177 (181)
Q Consensus       122 ~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p  177 (181)
                      +-            +|++|++++..+. .+|..+ +++..|.+|++..+.-...+|
T Consensus       594 Li------------~LryL~L~~t~I~-~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~  635 (889)
T KOG4658|consen  594 LV------------HLRYLDLSDTGIS-HLPSGL-GNLKKLIYLNLEVTGRLESIP  635 (889)
T ss_pred             hh------------hhhcccccCCCcc-ccchHH-HHHHhhheecccccccccccc
Confidence            54            4999999999999 899999 999999999999876544443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.55  E-value=8.2e-05  Score=62.84  Aligned_cols=121  Identities=24%  Similarity=0.254  Sum_probs=78.1

Q ss_pred             ccchh-cccccccc-CCCCcccC-CCCCCcEEEcCCCcccc-cchhHhhhccCCCCCCCCccEEEcccccceeecCchhh
Q 039018           45 TSLKH-SISYNVLE-GKLPTSFG-RLREPRSISLSWANKSQ-EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACIS  120 (181)
Q Consensus        45 ~~L~~-~l~~n~~~-~~~~~~~~-~l~~L~~L~l~~n~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~  120 (181)
                      .+|+. ++++.... ...+..++ .+|+|+.|.+.+-.+.. ......       ..+++|..||+|+..++ .+ ..++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc-------~sFpNL~sLDIS~TnI~-nl-~GIS  192 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLC-------ASFPNLRSLDISGTNIS-NL-SGIS  192 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHh-------hccCccceeecCCCCcc-Cc-HHHh
Confidence            34555 55443321 11223333 36888888887755532 233344       67788999999998887 33 5677


Q ss_pred             cccccccccccc-------------cCCcccEEEccCCccccCCChhH------HHhcccCCEeEecCCccccc
Q 039018          121 NSSARKEVGYTS-------------ILNLLRITDRSKNNFSGVLPAEL------VTDLVALRSLNLFHNHFKEK  175 (181)
Q Consensus       121 ~~~~l~~~~~~n-------------~l~~L~~l~l~~n~~~~~~p~~~------~~~l~~L~~L~L~~n~l~~~  175 (181)
                      .+++|+.+.+.|             .+++|++||+|..... ..+..+      ...+|.|+.||.|+..+.+.
T Consensus       193 ~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  193 RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            888888865555             7889999999987655 222211      13588999999998776543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.52  E-value=0.00013  Score=51.86  Aligned_cols=54  Identities=19%  Similarity=0.172  Sum_probs=31.1

Q ss_pred             ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccce
Q 039018           50 SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLS  112 (181)
Q Consensus        50 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~  112 (181)
                      ++++|.+. .+ +.+..++.|.+|.+++|.+....|.--       ..+++|+.|.+.+|.+.
T Consensus        48 DLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~-------~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   48 DLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLD-------TFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             cccccchh-hc-ccCCCccccceEEecCCcceeeccchh-------hhccccceEEecCcchh
Confidence            56666555 22 235566666666666666665544443       34456666666666654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.45  E-value=0.00014  Score=53.48  Aligned_cols=104  Identities=19%  Similarity=0.188  Sum_probs=67.2

Q ss_pred             ccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCc--ccccchhHhhhccCCCCCCCCccEEEcccccceeecCchh
Q 039018           43 NLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWAN--KSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI  119 (181)
Q Consensus        43 ~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~--~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~  119 (181)
                      ....|+. .+.+..++ .+ ..+..+++|+.|.++.|.  +.+.++...       -++++|++++++.|++.  .+.++
T Consensus        41 ~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-------e~~P~l~~l~ls~Nki~--~lstl  109 (260)
T KOG2739|consen   41 EFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLA-------EKAPNLKVLNLSGNKIK--DLSTL  109 (260)
T ss_pred             cccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehh-------hhCCceeEEeecCCccc--ccccc
Confidence            3445555 55555555 22 346678899999999994  444443333       45699999999999986  24444


Q ss_pred             hcccccccccccccCCcccEEEccCCccccCCC---hhHHHhcccCCEeEe
Q 039018          120 SNSSARKEVGYTSILNLLRITDRSKNNFSGVLP---AELVTDLVALRSLNL  167 (181)
Q Consensus       120 ~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p---~~~~~~l~~L~~L~L  167 (181)
                      .-++.         +.+|..|++.+|..+. +-   ..+|.-+++|++|+=
T Consensus       110 ~pl~~---------l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  110 RPLKE---------LENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             chhhh---------hcchhhhhcccCCccc-cccHHHHHHHHhhhhccccc
Confidence            44444         5557888888877763 22   235577888888764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=9.1e-06  Score=61.04  Aligned_cols=143  Identities=16%  Similarity=0.087  Sum_probs=82.6

Q ss_pred             CCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCc-cccc-chhH
Q 039018           11 SLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWAN-KSQE-ILEI   87 (181)
Q Consensus        11 ~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~-~~~~   87 (181)
                      .||.||||...|+..-          +..-+..|.+|+. .+.++.+.+.+...+.+-.+|+.++++++. ++.. +.-.
T Consensus       186 Rlq~lDLS~s~it~st----------l~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll  255 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVST----------LHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLL  255 (419)
T ss_pred             hhHHhhcchhheeHHH----------HHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHH
Confidence            4788888888876211          1123566777777 788888887777777777888888887754 2211 1223


Q ss_pred             hhhccCCCCCCCCccEEEcccccceeecCchhhc--cccccc-ccccc--------------cCCcccEEEccCCcc-cc
Q 039018           88 FHSFSRDNWTLRSLQILDIACNNLSGAIPACISN--SSARKE-VGYTS--------------ILNLLRITDRSKNNF-SG  149 (181)
Q Consensus        88 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~--~~~l~~-~~~~n--------------~l~~L~~l~l~~n~~-~~  149 (181)
                      +       ..+..|+.|+++.+.+....-..+..  -.+|+. .+.|.              .++++.+||++.|.. +.
T Consensus       256 ~-------~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~  328 (419)
T KOG2120|consen  256 L-------SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN  328 (419)
T ss_pred             H-------HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc
Confidence            4       56777888888777654221110000  001111 11221              566778888877643 22


Q ss_pred             CCChhHHHhcccCCEeEecCCc
Q 039018          150 VLPAELVTDLVALRSLNLFHNH  171 (181)
Q Consensus       150 ~~p~~~~~~l~~L~~L~L~~n~  171 (181)
                      ....++ -+++.|++|.++.|.
T Consensus       329 ~~~~~~-~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  329 DCFQEF-FKFNYLQHLSLSRCY  349 (419)
T ss_pred             hHHHHH-Hhcchheeeehhhhc
Confidence            222233 567778888877766

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.35  E-value=0.00045  Score=54.67  Aligned_cols=129  Identities=16%  Similarity=0.198  Sum_probs=63.5

Q ss_pred             CCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchh
Q 039018            8 NLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILE   86 (181)
Q Consensus         8 ~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~   86 (181)
                      .++.++.|++++|.++ .+|+        +|.      +|++ .+++|.-...+|+.+  ..+|+.|++++|.....+|.
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP~--------LP~------sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~  112 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLPV--------LPN------ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE  112 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccCC--------CCC------CCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence            4678889999999877 4442        222      2444 455533322455443  24677777776632223333


Q ss_pred             HhhhccCCCCCCCCccEEEcccccce--eecCchhhccccccc-ccccc-----cCCcccEEEccCCccccCCChhHHHh
Q 039018           87 IFHSFSRDNWTLRSLQILDIACNNLS--GAIPACISNSSARKE-VGYTS-----ILNLLRITDRSKNNFSGVLPAELVTD  158 (181)
Q Consensus        87 ~~~~~~~~~~~~~~L~~L~l~~n~i~--~~~p~~~~~~~~l~~-~~~~n-----~l~~L~~l~l~~n~~~~~~p~~~~~~  158 (181)
                      .             |+.|++..+...  +.+|..+..+.---. .....     -.++|++|++++|... .+|+.+   
T Consensus       113 s-------------Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~L---  175 (426)
T PRK15386        113 S-------------VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKL---  175 (426)
T ss_pred             c-------------cceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCcccc---
Confidence            2             333444443321  144444332210000 00000     1245777888777655 455433   


Q ss_pred             cccCCEeEecCC
Q 039018          159 LVALRSLNLFHN  170 (181)
Q Consensus       159 l~~L~~L~L~~n  170 (181)
                      -.+|+.|.++.+
T Consensus       176 P~SLk~L~ls~n  187 (426)
T PRK15386        176 PESLQSITLHIE  187 (426)
T ss_pred             cccCcEEEeccc
Confidence            246677777655

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.16  E-value=0.00038  Score=58.94  Aligned_cols=16  Identities=19%  Similarity=0.285  Sum_probs=7.7

Q ss_pred             cCCCCCCcEEEcCCCc
Q 039018           64 FGRLREPRSISLSWAN   79 (181)
Q Consensus        64 ~~~l~~L~~L~l~~n~   79 (181)
                      +..+++|++||+|...
T Consensus       216 LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  216 LFNLKKLRVLDISRDK  231 (699)
T ss_pred             HhcccCCCeeeccccc
Confidence            3445555555555433

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.14  E-value=0.00012  Score=55.10  Aligned_cols=43  Identities=16%  Similarity=0.159  Sum_probs=30.6

Q ss_pred             cCCcccEEEccCCccccC-CChhHHHhcccCCEeEecCCcccccC
Q 039018          133 ILNLLRITDRSKNNFSGV-LPAELVTDLVALRSLNLFHNHFKEKF  176 (181)
Q Consensus       133 ~l~~L~~l~l~~n~~~~~-~p~~~~~~l~~L~~L~L~~n~l~~~~  176 (181)
                      ..+++..|+++.|+|... ..+.+ .+++.|+.|.+++|.+.+.+
T Consensus       222 ~~p~~~~LnL~~~~idswasvD~L-n~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  222 PFPSLSCLNLGANNIDSWASVDAL-NGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             CCCcchhhhhcccccccHHHHHHH-cCCchhheeeccCCcccccc
Confidence            556677788888887632 12345 67888999999999887654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.14  E-value=0.00072  Score=48.22  Aligned_cols=105  Identities=18%  Similarity=0.124  Sum_probs=63.4

Q ss_pred             CCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccch-hHh
Q 039018           11 SLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEIL-EIF   88 (181)
Q Consensus        11 ~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~   88 (181)
                      ....+||++|.+. .++            .+..++.|+. .+.+|.++..-|.--..++++..|.+.+|.+..... +-+
T Consensus        43 ~~d~iDLtdNdl~-~l~------------~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL  109 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KLD------------NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPL  109 (233)
T ss_pred             ccceecccccchh-hcc------------cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchh
Confidence            3455777777776 222            2556777777 888888885544433446778888888887752211 223


Q ss_pred             hhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccC
Q 039018           89 HSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSK  144 (181)
Q Consensus        89 ~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~  144 (181)
                             ..+++|++|.+-+|+++ ..+..-..+        -..+++|++||++.
T Consensus       110 -------a~~p~L~~Ltll~Npv~-~k~~YR~yv--------l~klp~l~~LDF~k  149 (233)
T KOG1644|consen  110 -------ASCPKLEYLTLLGNPVE-HKKNYRLYV--------LYKLPSLRTLDFQK  149 (233)
T ss_pred             -------ccCCccceeeecCCchh-cccCceeEE--------EEecCcceEeehhh
Confidence                   56778888888888776 222210000        00256688888755

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.11  E-value=0.00032  Score=52.34  Aligned_cols=71  Identities=21%  Similarity=0.197  Sum_probs=48.9

Q ss_pred             CCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCccc-------------CCCCC
Q 039018            4 NGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSF-------------GRLRE   69 (181)
Q Consensus         4 ~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~-------------~~l~~   69 (181)
                      +++.+|++|+..++|+|.+....|+-+       .+-+.+-+.|.+ .+++|.+...--..+             ..-+.
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L-------~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~  158 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEEL-------GDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPK  158 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHH-------HHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCC
Confidence            356789999999999999997777733       344556666777 778877763211112             24467


Q ss_pred             CcEEEcCCCccc
Q 039018           70 PRSISLSWANKS   81 (181)
Q Consensus        70 L~~L~l~~n~~~   81 (181)
                      |++...+.|++.
T Consensus       159 Le~vicgrNRle  170 (388)
T COG5238         159 LEVVICGRNRLE  170 (388)
T ss_pred             ceEEEeccchhc
Confidence            888888888764

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.08  E-value=0.0019  Score=51.26  Aligned_cols=115  Identities=17%  Similarity=0.124  Sum_probs=63.3

Q ss_pred             cccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccc-cceeecCchh
Q 039018           42 GNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACN-NLSGAIPACI  119 (181)
Q Consensus        42 ~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~i~~~~p~~~  119 (181)
                      ..+.+++. ++++|.+. .+|.   -..+|+.|.++++.-...+|+.+         ..+|+.|.+++| .+. .+|..+
T Consensus        49 ~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---------P~nLe~L~Ls~Cs~L~-sLP~sL  114 (426)
T PRK15386         49 EEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---------PEGLEKLTVCHCPEIS-GLPESV  114 (426)
T ss_pred             HHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---------hhhhhheEccCccccc-cccccc
Confidence            34667777 88988877 6662   23469999998765444555544         257899999988 555 677654


Q ss_pred             hccccccccc---ccccCCcccEEEccCCccccCCChhHHHhc-ccCCEeEecCCccc
Q 039018          120 SNSSARKEVG---YTSILNLLRITDRSKNNFSGVLPAELVTDL-VALRSLNLFHNHFK  173 (181)
Q Consensus       120 ~~~~~l~~~~---~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l-~~L~~L~L~~n~l~  173 (181)
                      ..+. +....   ...-.++|+.|.+.+++..  ....+...+ ++|++|++++|...
T Consensus       115 e~L~-L~~n~~~~L~~LPssLk~L~I~~~n~~--~~~~lp~~LPsSLk~L~Is~c~~i  169 (426)
T PRK15386        115 RSLE-IKGSATDSIKNVPNGLTSLSINSYNPE--NQARIDNLISPSLKTLSLTGCSNI  169 (426)
T ss_pred             ceEE-eCCCCCcccccCcchHhheeccccccc--cccccccccCCcccEEEecCCCcc
Confidence            3322 00000   0011233445554322111  000000112 46899999988765

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.96  E-value=0.0045  Score=40.74  Aligned_cols=123  Identities=22%  Similarity=0.246  Sum_probs=54.3

Q ss_pred             CCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccc
Q 039018            4 NGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQ   82 (181)
Q Consensus         4 ~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~   82 (181)
                      ..+.++++|+.+.+.. .+. .+++          ..+..++.++. .+..+ +...-...+..+++++.+.+.. .+..
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~-~I~~----------~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~   71 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIK-KIGE----------NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKS   71 (129)
T ss_dssp             TTTTT-TT--EEEETS-T---EE-T----------TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-E
T ss_pred             HHHhCCCCCCEEEECC-Cee-EeCh----------hhccccccccccccccc-ccccceeeeecccccccccccc-cccc
Confidence            4566777888888875 444 3443          34666767777 66654 4433445567777788888864 3332


Q ss_pred             cchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccC
Q 039018           83 EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVAL  162 (181)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L  162 (181)
                      .....|       ..+..++.+.+..+ +...-...+..+             .++.+.+.. .+. .++...|..+++|
T Consensus        72 i~~~~F-------~~~~~l~~i~~~~~-~~~i~~~~f~~~-------------~l~~i~~~~-~~~-~i~~~~F~~~~~l  128 (129)
T PF13306_consen   72 IGDNAF-------SNCTNLKNIDIPSN-ITEIGSSSFSNC-------------NLKEINIPS-NIT-KIEENAFKNCTKL  128 (129)
T ss_dssp             E-TTTT-------TT-TTECEEEETTT--BEEHTTTTTT--------------T--EEE-TT-B-S-S----GGG-----
T ss_pred             cccccc-------cccccccccccCcc-ccEEchhhhcCC-------------CceEEEECC-Ccc-EECCccccccccC
Confidence            333445       55788888887665 442333445543             366676654 333 4454444666655


Q ss_pred             C
Q 039018          163 R  163 (181)
Q Consensus       163 ~  163 (181)
                      +
T Consensus       129 ~  129 (129)
T PF13306_consen  129 K  129 (129)
T ss_dssp             -
T ss_pred             C
Confidence            3

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.86  E-value=0.00047  Score=31.04  Aligned_cols=18  Identities=33%  Similarity=0.517  Sum_probs=11.1

Q ss_pred             CCEeEecCCcccccCCCCC
Q 039018          162 LRSLNLFHNHFKEKFPGSI  180 (181)
Q Consensus       162 L~~L~L~~n~l~~~~p~~i  180 (181)
                      |++|+|++|+++ .+|++|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            566666666666 566554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.14  E-value=0.0028  Score=28.39  Aligned_cols=12  Identities=42%  Similarity=0.476  Sum_probs=5.2

Q ss_pred             ccEEEccCCccc
Q 039018          137 LRITDRSKNNFS  148 (181)
Q Consensus       137 L~~l~l~~n~~~  148 (181)
                      |++|++++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.12  E-value=0.0033  Score=26.31  Aligned_cols=13  Identities=38%  Similarity=0.641  Sum_probs=5.8

Q ss_pred             cCCEeEecCCccc
Q 039018          161 ALRSLNLFHNHFK  173 (181)
Q Consensus       161 ~L~~L~L~~n~l~  173 (181)
                      +|+.|++++|.++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4555666666555

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.99  E-value=0.0029  Score=47.95  Aligned_cols=39  Identities=31%  Similarity=0.453  Sum_probs=29.1

Q ss_pred             CCCCcEEEcCCCcccc--cchhHhhhccCCCCCCCCccEEEcccccce
Q 039018           67 LREPRSISLSWANKSQ--EILEIFHSFSRDNWTLRSLQILDIACNNLS  112 (181)
Q Consensus        67 l~~L~~L~l~~n~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~  112 (181)
                      .+.++.+|+.+|.++.  .+..-+       ..++.|+.|+++.|.+.
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~il-------e~lP~l~~LNls~N~L~  110 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAIL-------EQLPALTTLNLSCNSLS  110 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHH-------hcCccceEeeccCCcCC
Confidence            5678888888888763  333445       67888999999988876

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.71  E-value=0.0096  Score=44.02  Aligned_cols=66  Identities=21%  Similarity=0.240  Sum_probs=44.8

Q ss_pred             ccccccchh-ccccc--cccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccce
Q 039018           41 LGNLTSLKH-SISYN--VLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLS  112 (181)
Q Consensus        41 l~~l~~L~~-~l~~n--~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~  112 (181)
                      +..+++|+. .++.|  .+.+.++-....+++|++++++.|++.-  ...+.    ....+.+|..|++.+|..+
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~----pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLR----PLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccc----hhhhhcchhhhhcccCCcc
Confidence            445778888 88888  6665666556667999999999998752  12210    1156677888888887665

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.53  E-value=0.00098  Score=50.43  Aligned_cols=86  Identities=20%  Similarity=0.134  Sum_probs=47.9

Q ss_pred             CCcEEEcCCCccccc-chhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCC-c
Q 039018           69 EPRSISLSWANKSQE-ILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKN-N  146 (181)
Q Consensus        69 ~L~~L~l~~n~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n-~  146 (181)
                      .++++|+++..++.. +...+       ..+.+|+.+.+.++++.+.+..+++.-.+            |+.++++++ .
T Consensus       186 Rlq~lDLS~s~it~stl~~iL-------s~C~kLk~lSlEg~~LdD~I~~~iAkN~~------------L~~lnlsm~sG  246 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGIL-------SQCSKLKNLSLEGLRLDDPIVNTIAKNSN------------LVRLNLSMCSG  246 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHH-------HHHHhhhhccccccccCcHHHHHHhcccc------------ceeeccccccc
Confidence            366667766655432 12223       45666777777777766555555555333            666666653 3


Q ss_pred             cccCCChhHHHhcccCCEeEecCCccc
Q 039018          147 FSGVLPAELVTDLVALRSLNLFHNHFK  173 (181)
Q Consensus       147 ~~~~~p~~~~~~l~~L~~L~L~~n~l~  173 (181)
                      ++..-.+.++..|..|+.|+|+++.+.
T Consensus       247 ~t~n~~~ll~~scs~L~~LNlsWc~l~  273 (419)
T KOG2120|consen  247 FTENALQLLLSSCSRLDELNLSWCFLF  273 (419)
T ss_pred             cchhHHHHHHHhhhhHhhcCchHhhcc
Confidence            443333344466666666666666554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.38  E-value=0.0039  Score=46.87  Aligned_cols=95  Identities=17%  Similarity=0.077  Sum_probs=61.6

Q ss_pred             ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccccc
Q 039018           50 SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVG  129 (181)
Q Consensus        50 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~  129 (181)
                      ++-+|.+.+.  .-...|+.|++|.|+-|+++..  ..+       ..|++|+.|+|..|.|. .+ +++..+++     
T Consensus        25 Ncwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl-------~rCtrLkElYLRkN~I~-sl-dEL~YLkn-----   86 (388)
T KOG2123|consen   25 NCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APL-------QRCTRLKELYLRKNCIE-SL-DELEYLKN-----   86 (388)
T ss_pred             cccCCCccHH--HHHHhcccceeEEeeccccccc--hhH-------HHHHHHHHHHHHhcccc-cH-HHHHHHhc-----
Confidence            4555555532  1234688888888888887633  223       56788888888888875 32 23444444     


Q ss_pred             ccccCCcccEEEccCCccccCCCh----hHHHhcccCCEeE
Q 039018          130 YTSILNLLRITDRSKNNFSGVLPA----ELVTDLVALRSLN  166 (181)
Q Consensus       130 ~~n~l~~L~~l~l~~n~~~~~~p~----~~~~~l~~L~~L~  166 (181)
                          +++|+.|.|..|.-.+.-+.    .++..+|+|+.||
T Consensus        87 ----lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   87 ----LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ----CchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence                67788888888877654332    2336788888876

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.06  E-value=0.023  Score=26.38  Aligned_cols=20  Identities=40%  Similarity=0.399  Sum_probs=12.6

Q ss_pred             CcccEEEccCCccccCCChhH
Q 039018          135 NLLRITDRSKNNFSGVLPAEL  155 (181)
Q Consensus       135 ~~L~~l~l~~n~~~~~~p~~~  155 (181)
                      ++|++|++++|++. .+|...
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~   21 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHH
Confidence            34666777777766 566554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.06  E-value=0.023  Score=26.38  Aligned_cols=20  Identities=40%  Similarity=0.399  Sum_probs=12.6

Q ss_pred             CcccEEEccCCccccCCChhH
Q 039018          135 NLLRITDRSKNNFSGVLPAEL  155 (181)
Q Consensus       135 ~~L~~l~l~~n~~~~~~p~~~  155 (181)
                      ++|++|++++|++. .+|...
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~   21 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHH
Confidence            34666777777766 566554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.06  E-value=0.003  Score=47.43  Aligned_cols=64  Identities=27%  Similarity=0.222  Sum_probs=38.0

Q ss_pred             CCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCC--cccCCCCCCcEEEcCCCcccccc
Q 039018            8 NLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLP--TSFGRLREPRSISLSWANKSQEI   84 (181)
Q Consensus         8 ~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~   84 (181)
                      +|+.|++|.||=|.|...-             .+..|+.|++ ++..|.+. .+.  ..+.++++|+.|.+..|+..+..
T Consensus        39 kMp~lEVLsLSvNkIssL~-------------pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~a  104 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLA-------------PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEA  104 (388)
T ss_pred             hcccceeEEeeccccccch-------------hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCccccc
Confidence            4555666666666665211             2556777777 77777766 322  22456677777777777665544


Q ss_pred             h
Q 039018           85 L   85 (181)
Q Consensus        85 ~   85 (181)
                      +
T Consensus       105 g  105 (388)
T KOG2123|consen  105 G  105 (388)
T ss_pred             c
Confidence            3

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.88  E-value=0.016  Score=26.95  Aligned_cols=20  Identities=35%  Similarity=0.584  Sum_probs=17.0

Q ss_pred             cccCCEeEecCCcccccCCCC
Q 039018          159 LVALRSLNLFHNHFKEKFPGS  179 (181)
Q Consensus       159 l~~L~~L~L~~n~l~~~~p~~  179 (181)
                      +++|+.|+|++|.++ .+|+.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            467999999999999 77764

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.88  E-value=0.016  Score=26.95  Aligned_cols=20  Identities=35%  Similarity=0.584  Sum_probs=17.0

Q ss_pred             cccCCEeEecCCcccccCCCC
Q 039018          159 LVALRSLNLFHNHFKEKFPGS  179 (181)
Q Consensus       159 l~~L~~L~L~~n~l~~~~p~~  179 (181)
                      +++|+.|+|++|.++ .+|+.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            467999999999999 77764

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.81  E-value=0.17  Score=33.09  Aligned_cols=105  Identities=16%  Similarity=0.177  Sum_probs=54.2

Q ss_pred             cccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCch
Q 039018           40 GLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPAC  118 (181)
Q Consensus        40 ~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~  118 (181)
                      .+.++.+|+. .+.. .+...-...+..+++++.+.+..+ +.......|       ..+..++.+.+.. .+...-...
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F-------~~~~~l~~i~~~~-~~~~i~~~~   76 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAF-------SNCKSLESITFPN-NLKSIGDNA   76 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTT-------TT-TT-EEEEETS-TT-EE-TTT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeee-------ecccccccccccc-ccccccccc
Confidence            4666777777 6654 344344566788888999998765 443334456       6777899998866 443122344


Q ss_pred             hhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecC
Q 039018          119 ISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFH  169 (181)
Q Consensus       119 ~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~  169 (181)
                      +..+.            .++.+++..+ +. .++...|..+ .|+.+.+..
T Consensus        77 F~~~~------------~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   77 FSNCT------------NLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TTT-T------------TECEEEETTT--B-EEHTTTTTT--T--EEE-TT
T ss_pred             ccccc------------cccccccCcc-cc-EEchhhhcCC-CceEEEECC
Confidence            55544            4788888665 44 3444444776 788887764

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=93.61  E-value=0.014  Score=26.54  Aligned_cols=20  Identities=35%  Similarity=0.373  Sum_probs=13.3

Q ss_pred             CcCCCeeeccCcccccccCc
Q 039018            9 LSSLRYLDLSDNQFNSTIPE   28 (181)
Q Consensus         9 l~~L~~L~ls~n~i~~~~p~   28 (181)
                      +++|+.|++++|.|.+....
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~   20 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGAS   20 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHH
Confidence            47899999999999854443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.68  E-value=0.0023  Score=46.80  Aligned_cols=87  Identities=17%  Similarity=0.140  Sum_probs=53.9

Q ss_pred             cCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEcc
Q 039018           64 FGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRS  143 (181)
Q Consensus        64 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~  143 (181)
                      +......+.||++.|+.. .+...|       ..+..+..++++.|.+. ..|..+++...            +..++..
T Consensus        38 i~~~kr~tvld~~s~r~v-n~~~n~-------s~~t~~~rl~~sknq~~-~~~~d~~q~~e------------~~~~~~~   96 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV-NLGKNF-------SILTRLVRLDLSKNQIK-FLPKDAKQQRE------------TVNAASH   96 (326)
T ss_pred             hhccceeeeehhhhhHHH-hhccch-------HHHHHHHHHhccHhhHh-hChhhHHHHHH------------HHHHHhh
Confidence            444566777888777654 223344       55667777788888776 77777777554            4445555


Q ss_pred             CCccccCCChhHHHhcccCCEeEecCCccc
Q 039018          144 KNNFSGVLPAELVTDLVALRSLNLFHNHFK  173 (181)
Q Consensus       144 ~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~  173 (181)
                      .|..+ ..|... +..+.++++++..|.+.
T Consensus        97 ~n~~~-~~p~s~-~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   97 KNNHS-QQPKSQ-KKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             ccchh-hCCccc-cccCCcchhhhccCcch
Confidence            55554 556555 66666666666655543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.30  E-value=0.071  Score=38.26  Aligned_cols=33  Identities=30%  Similarity=0.199  Sum_probs=15.5

Q ss_pred             CcccEEEccCC-ccccCCChhHHHhcccCCEeEec
Q 039018          135 NLLRITDRSKN-NFSGVLPAELVTDLVALRSLNLF  168 (181)
Q Consensus       135 ~~L~~l~l~~n-~~~~~~p~~~~~~l~~L~~L~L~  168 (181)
                      ++|+.|++++| +|+..--..+ .++++|+.|.+.
T Consensus       151 ~~L~~L~lsgC~rIT~~GL~~L-~~lknLr~L~l~  184 (221)
T KOG3864|consen  151 PSLQDLDLSGCPRITDGGLACL-LKLKNLRRLHLY  184 (221)
T ss_pred             cchheeeccCCCeechhHHHHH-HHhhhhHHHHhc
Confidence            34556666544 4443323333 455555555443

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=91.62  E-value=0.12  Score=24.08  Aligned_cols=17  Identities=29%  Similarity=0.628  Sum_probs=10.9

Q ss_pred             cCCEeEecCCcccccCCC
Q 039018          161 ALRSLNLFHNHFKEKFPG  178 (181)
Q Consensus       161 ~L~~L~L~~n~l~~~~p~  178 (181)
                      +|+.|++++|+++ ++|+
T Consensus         3 ~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             ccceeecCCCccc-cCcc
Confidence            4566666666666 6664

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.34  E-value=0.013  Score=43.07  Aligned_cols=45  Identities=9%  Similarity=-0.021  Sum_probs=32.0

Q ss_pred             ccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCccc
Q 039018           36 TISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKS   81 (181)
Q Consensus        36 ~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~   81 (181)
                      .+|+.++....++. ++..|+.+ ..|.+++.++++++++...+.+.
T Consensus        79 ~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   79 FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence            45566677777766 66666666 77777888888888887777654

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=86.98  E-value=0.51  Score=22.01  Aligned_cols=15  Identities=47%  Similarity=0.689  Sum_probs=12.9

Q ss_pred             CcCCCeeeccCcccc
Q 039018            9 LSSLRYLDLSDNQFN   23 (181)
Q Consensus         9 l~~L~~L~ls~n~i~   23 (181)
                      +++|+.|+++.|.|+
T Consensus         1 L~~L~~L~L~~NkI~   15 (26)
T smart00365        1 LTNLEELDLSQNKIK   15 (26)
T ss_pred             CCccCEEECCCCccc
Confidence            467899999999997

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=86.29  E-value=0.015  Score=47.34  Aligned_cols=37  Identities=27%  Similarity=0.273  Sum_probs=21.2

Q ss_pred             cccEEEccCCccccCCCh----hHHHhcccCCEeEecCCccc
Q 039018          136 LLRITDRSKNNFSGVLPA----ELVTDLVALRSLNLFHNHFK  173 (181)
Q Consensus       136 ~L~~l~l~~n~~~~~~p~----~~~~~l~~L~~L~L~~n~l~  173 (181)
                      .+++++++.|.++..-..    .+ ..++.++.+.++.|.+.
T Consensus       263 ~l~~l~l~~nsi~~~~~~~L~~~l-~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  263 TLRVLDLSRNSITEKGVRDLAEVL-VSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hhhhhhhhcCCccccchHHHHHHH-hhhHHHHHhhcccCccc
Confidence            356677777776643322    22 34556666666666654

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=85.44  E-value=0.62  Score=21.97  Aligned_cols=14  Identities=57%  Similarity=0.795  Sum_probs=12.6

Q ss_pred             cCCCeeeccCcccc
Q 039018           10 SSLRYLDLSDNQFN   23 (181)
Q Consensus        10 ~~L~~L~ls~n~i~   23 (181)
                      ++|+.|+|++|.+.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            57999999999997

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=84.46  E-value=0.66  Score=37.37  Aligned_cols=65  Identities=17%  Similarity=0.127  Sum_probs=31.7

Q ss_pred             CCCCCccEEEccccc-ceeecCchhhcccccccccccccCCcccEEEccCCc-cccCCChhHHHhcccCCEeEecCCc
Q 039018           96 WTLRSLQILDIACNN-LSGAIPACISNSSARKEVGYTSILNLLRITDRSKNN-FSGVLPAELVTDLVALRSLNLFHNH  171 (181)
Q Consensus        96 ~~~~~L~~L~l~~n~-i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~-~~~~~p~~~~~~l~~L~~L~L~~n~  171 (181)
                      ..+.+|+.++++.+. ++...-..+..           .++.|+.|.+.++. ++..--..+...++.|+.|+++++.
T Consensus       240 ~~~~~L~~l~l~~~~~isd~~l~~l~~-----------~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  240 SICRKLKSLDLSGCGLVTDIGLSALAS-----------RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hhcCCcCccchhhhhccCchhHHHHHh-----------hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            344666667766665 43222122221           12346666655554 3433223343556666666666544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	181
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-09
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-09
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 87/179 (48%), Gaps = 31/179 (17%)
Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKL 60
           PIP  P  L SL+YL L++N+F   IP+++S   C   +GL         +S N   G +
Sbjct: 259 PIP--PLPLKSLQYLSLAENKFTGEIPDFLSGA-CDTLTGL--------DLSGNHFYGAV 307
Query: 61  PTSFGRLREPRSISLSWANKSQEI-LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI 119
           P  FG      S++LS  N S E+ ++           +R L++LD++ N  SG +P  +
Sbjct: 308 PPFFGSCSLLESLALSSNNFSGELPMDTL-------LKMRGLKVLDLSFNEFSGELPESL 360
Query: 120 SNSSARKEVGYTSILNLLRITDRSKNNFSG-VLPAELVTDLVALRSLNLFHNHFKEKFP 177
           +N SA       S+L L    D S NNFSG +LP         L+ L L +N F  K P
Sbjct: 361 TNLSA-------SLLTL----DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 408

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 87/179 (48%), Gaps = 31/179 (17%)
Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKL 60
           PIP  P  L SL+YL L++N+F   IP+++S   C   +GL         +S N   G +
Sbjct: 262 PIP--PLPLKSLQYLSLAENKFTGEIPDFLSGA-CDTLTGL--------DLSGNHFYGAV 310
Query: 61  PTSFGRLREPRSISLSWANKSQEI-LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI 119
           P  FG      S++LS  N S E+ ++           +R L++LD++ N  SG +P  +
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTL-------LKMRGLKVLDLSFNEFSGELPESL 363
Query: 120 SNSSARKEVGYTSILNLLRITDRSKNNFSG-VLPAELVTDLVALRSLNLFHNHFKEKFP 177
           +N SA       S+L L    D S NNFSG +LP         L+ L L +N F  K P
Sbjct: 364 TNLSA-------SLLTL----DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKL 60
           PIP     L+ L YL ++    +  IP+++S+I           T +    SYN L G L
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK----------TLVTLDFSYNALSGTL 141
Query: 61  PTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACIS 120
           P S   L     I+      S  I + + SFS      +    + I+ N L+G IP   +
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFS------KLFTSMTISRNRLTGKIPPTFA 195
Query: 121 N 121
           N
Sbjct: 196 N 196

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	181
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 88.4 bits (220), Expect = 5e-21
 Identities = 56/183 (30%), Positives = 84/183 (45%), Gaps = 33/183 (18%)

Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGK 59
           PIP  P  L SL+YL L++N+F   IP+++S          G   +L    +S N   G 
Sbjct: 262 PIP--PLPLKSLQYLSLAENKFTGEIPDFLS----------GACDTLTGLDLSGNHFYGA 309

Query: 60  LPTSFGRLREPRSISLSWANKSQEI-LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPAC 118
           +P  FG      S++LS  N S E+ ++           +R L++LD++ N  SG +P  
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTL-------LKMRGLKVLDLSFNEFSGELPES 362

Query: 119 ISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAEL-VTDLVALRSLNLFHNHFKEKFP 177
           ++N SA            L   D S NNFSG +   L       L+ L L +N F  K P
Sbjct: 363 LTNLSAS-----------LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411

Query: 178 GSI 180
            ++
Sbjct: 412 PTL 414

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 88.0 bits (219), Expect = 6e-21
 Identities = 47/191 (24%), Positives = 66/191 (34%), Gaps = 30/191 (15%)

Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGK 59
            +  G   L+SL  LDLS N  +                       LKH +IS N + G 
Sbjct: 143 KVSGGL-KLNSLEVLDLSANSISGANVVGWVL--------SDGCGELKHLAISGNKISGD 193

Query: 60  LPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI 119
           +     R      + +S  N S  I  +            +LQ LDI+ N LSG     I
Sbjct: 194 VD--VSRCVNLEFLDVSSNNFSTGIPFLGD--------CSALQHLDISGNKLSGDFSRAI 243

Query: 120 SNSSARKEVGY----------TSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFH 169
           S  +  K +               L  L+    ++N F+G +P  L      L  L+L  
Sbjct: 244 STCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303

Query: 170 NHFKEKFPGSI 180
           NHF    P   
Sbjct: 304 NHFYGAVPPFF 314

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 83.8 bits (208), Expect = 2e-19
 Identities = 38/180 (21%), Positives = 54/180 (30%), Gaps = 32/180 (17%)

Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKL 60
            IP    +  SL +LDL+ N FN TIP  +              +     I+ N + GK 
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAM-----------FKQSGK---IAANFIAGKR 574

Query: 61  PTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACIS 120
                     +    +        LE     S     L +    +I      G       
Sbjct: 575 YVYIKNDGMKKECHGAGNL-----LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629

Query: 121 NSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180
           N               +   D S N  SG +P E+   +  L  LNL HN      P  +
Sbjct: 630 N------------NGSMMFLDMSYNMLSGYIPKEI-GSMPYLFILNLGHNDISGSIPDEV 676

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 83.4 bits (207), Expect = 3e-19
 Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 34/175 (19%)

Query: 8   NLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGR 66
           + S+L++LD+S N+ +      I              T LK  +IS N   G +P     
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAI-----------STCTELKLLNISSNQFVGPIPPL--P 267

Query: 67  LREPRSISLSWANKSQEI-LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSAR 125
           L+  + +SL+    + EI   +  +         +L  LD++ N+  GA+P    +    
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGA-------CDTLTGLDLSGNHFYGAVPPFFGS---- 316

Query: 126 KEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180
                    +LL     S NNFSG LP + +  +  L+ L+L  N F  + P S+
Sbjct: 317 --------CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.7 bits (200), Expect = 3e-18
 Identities = 45/194 (23%), Positives = 72/194 (37%), Gaps = 38/194 (19%)

Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINC-------------TISSGLGNLTSL 47
            IP    N S L  L LS N  + TIP  +  ++               I   L  + +L
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468

Query: 48  KH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDI 106
           +   + +N L G++P+          ISLS  N+      +     +    L +L IL +
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSN-NR------LTGEIPKWIGRLENLAILKL 521

Query: 107 ACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLN 166
           + N+ SG IPA + +               L   D + N F+G +PA +       +S  
Sbjct: 522 SNNSFSGNIPAELGD------------CRSLIWLDLNTNLFNGTIPAAM-----FKQSGK 564

Query: 167 LFHNHFKEKFPGSI 180
           +  N    K    I
Sbjct: 565 IAANFIAGKRYVYI 578

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.8 bits (195), Expect = 1e-17
 Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 34/183 (18%)

Query: 1   PIPN--GPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLE 57
           PI         ++L+ L L +N F   IP  +            N + L    +S+N L 
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-----------SNCSELVSLHLSFNYLS 431

Query: 58  GKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPA 117
           G +P+S G L + R + L       EI +           +++L+ L +  N+L+G IP+
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL-------MYVKTLETLILDFNDLTGEIPS 484

Query: 118 CISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFP 177
            +SN +          LN + +   S N  +G +P  +   L  L  L L +N F    P
Sbjct: 485 GLSNCTN---------LNWISL---SNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNIP 531

Query: 178 GSI 180
             +
Sbjct: 532 AEL 534

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.2 bits (183), Expect = 4e-16
 Identities = 44/196 (22%), Positives = 74/196 (37%), Gaps = 36/196 (18%)

Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGK 59
            + +   +L+ L  L LS++  N ++                   SL    +S N L G 
Sbjct: 68  AVSSSLLSLTGLESLFLSNSHINGSVSG------------FKCSASLTSLDLSRNSLSGP 115

Query: 60  LPT--SFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPA 117
           + T  S G     + +++S  N      ++          L SL++LD++ N++SGA   
Sbjct: 116 VTTLTSLGSCSGLKFLNVSS-NTLDFPGKVSGGLK-----LNSLEVLDLSANSISGANVV 169

Query: 118 CISNSSARKEV-----------GYTSILNL--LRITDRSKNNFSGVLPAELVTDLVALRS 164
               S    E+           G   +     L   D S NNFS  +P   + D  AL+ 
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQH 227

Query: 165 LNLFHNHFKEKFPGSI 180
           L++  N     F  +I
Sbjct: 228 LDISGNKLSGDFSRAI 243

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 65.3 bits (160), Expect = 5e-13
 Identities = 35/152 (23%), Positives = 55/152 (36%), Gaps = 29/152 (19%)

Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKL 60
                   LS+    +++   +                   G++  L   +SYN+L G +
Sbjct: 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN--------NGSMMFL--DMSYNMLSGYI 648

Query: 61  PTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACIS 120
           P   G +     ++L   + S  I +           LR L ILD++ N L G IP  +S
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSIPD---EVGD----LRGLNILDLSSNKLDGRIPQAMS 701

Query: 121 NSSARKEVGYTSILNLLRITDRSKNNFSGVLP 152
                        L +L   D S NN SG +P
Sbjct: 702 A------------LTMLTEIDLSNNNLSGPIP 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.8 bits (138), Expect = 4e-10
 Identities = 28/140 (20%), Positives = 46/140 (32%), Gaps = 19/140 (13%)

Query: 42  GNLTSLK-HSISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRS 100
             +TS+   S   NV    + +S   L    S+ LS ++ +  +               S
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGF--------KCSAS 101

Query: 101 LQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLV 160
           L  LD++ N+LSG +    S  S           + L+  + S N             L 
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGS----------CSGLKFLNVSSNTLDFPGKVSGGLKLN 151

Query: 161 ALRSLNLFHNHFKEKFPGSI 180
           +L  L+L  N          
Sbjct: 152 SLEVLDLSANSISGANVVGW 171

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 14/77 (18%)

Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWIS-------------RINCTISSGLGNLTSL 47
            IP    ++  L  L+L  N  + +IP+ +              +++  I   +  LT L
Sbjct: 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706

Query: 48  KH-SISYNVLEGKLPTS 63
               +S N L G +P  
Sbjct: 707 TEIDLSNNNLSGPIPEM 723

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 83.0 bits (206), Expect = 1e-19
 Identities = 43/179 (24%), Positives = 70/179 (39%), Gaps = 35/179 (19%)

Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSI--SYNVLEG 58
            +P    +L +L  +    N+ +  IP              G+ + L  S+  S N L G
Sbjct: 140 TLPPSISSLPNLVGITFDGNRISGAIP-----------DSYGSFSKLFTSMTISRNRLTG 188

Query: 59  KLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPAC 118
           K+P +F  L     + LS      +   +F        + ++ Q + +A N+L+  +   
Sbjct: 189 KIPPTFANLN-LAFVDLSRNMLEGDASVLF-------GSDKNTQKIHLAKNSLAFDLG-- 238

Query: 119 ISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFP 177
                   +VG +  LN L   D   N   G LP  L T L  L SLN+  N+   + P
Sbjct: 239 --------KVGLSKNLNGL---DLRNNRIYGTLPQGL-TQLKFLHSLNVSFNNLCGEIP 285

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 82.6 bits (205), Expect = 2e-19
 Identities = 39/175 (22%), Positives = 58/175 (33%), Gaps = 36/175 (20%)

Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGK 59
           PIP     L+ L YL ++    +  IP+++             + +L     SYN L G 
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFL-----------SQIKTLVTLDFSYNALSGT 140

Query: 60  LPTSFGRLREPRSISLSWANKSQEI-LEIFHSFSRDNWTLRSL-QILDIACNNLSGAIPA 117
           LP S   L     I+      S  I                 L   + I+ N L+G IP 
Sbjct: 141 LPPSISSLPNLVGITFDGNRISGAIPDSYGS--------FSKLFTSMTISRNRLTGKIPP 192

Query: 118 CISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHF 172
             +N            LNL  + D S+N   G             + ++L  N  
Sbjct: 193 TFAN------------LNLAFV-DLSRNMLEGDASVLF-GSDKNTQKIHLAKNSL 233

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 77.2 bits (191), Expect = 1e-17
 Identities = 35/183 (19%), Positives = 67/183 (36%), Gaps = 37/183 (20%)

Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGK 59
            IP+    + +L  LD S N  + T+P             + +L +L   +   N + G 
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNALSGTLP-----------PSISSLPNLVGITFDGNRISGA 164

Query: 60  LPTSFGRLRE-PRSISLSWANKSQEI-LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPA 117
           +P S+G   +   S+++S    + +I     +          +L  +D++ N L G    
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL---------NLAFVDLSRNMLEGDASV 215

Query: 118 CISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFP 177
              +         T  ++L      +KN+ +  L    V     L  L+L +N      P
Sbjct: 216 LFGSDKN------TQKIHL------AKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLP 261

Query: 178 GSI 180
             +
Sbjct: 262 QGL 264

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 72.2 bits (178), Expect = 1e-15
 Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 34/171 (19%)

Query: 1   PIPNGPENLSSL-RYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGK 59
            IP+   + S L   + +S N+    IP   + +N         L  +   +S N+LEG 
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN---------LAFV--DLSRNMLEGD 212

Query: 60  LPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI 119
               FG  +  + I L+  + + ++ ++           ++L  LD+  N + G +P  +
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVG--------LSKNLNGLDLRNNRIYGTLPQGL 264

Query: 120 SNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHN 170
           +         +   LN+      S NN  G +P      L         +N
Sbjct: 265 TQLK------FLHSLNV------SFNNLCGEIPQGGN--LQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 70.6 bits (174), Expect = 4e-15
 Identities = 40/181 (22%), Positives = 63/181 (34%), Gaps = 30/181 (16%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSI--SYNVLEGK 59
           + +       +  LDLS        P         I S L NL  L        N L G 
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYP---------IPSSLANLPYLNFLYIGGINNLVGP 92

Query: 60  LPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI 119
           +P +  +L +   + ++  N S  I +     S+    +++L  LD + N LSG +P  I
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPD---FLSQ----IKTLVTLDFSYNALSGTLPPSI 145

Query: 120 SNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGS 179
           S+            L  L       N  SG +P    +      S+ +  N    K P +
Sbjct: 146 SS------------LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193

Query: 180 I 180
            
Sbjct: 194 F 194

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 48.3 bits (116), Expect = 3e-07
 Identities = 35/148 (23%), Positives = 50/148 (33%), Gaps = 24/148 (16%)

Query: 39  SGLGNLTSL-----KHSISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSR 93
             LGN T+L               G L  +  +     ++ LS      +   I  S + 
Sbjct: 16  KDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLS-GLNLPKPYPIPSSLAN 74

Query: 94  DNWTLRSLQILDIA-CNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLP 152
               L  L  L I   NNL G IP  I+             L  L     +  N SG +P
Sbjct: 75  ----LPYLNFLYIGGINNLVGPIPPAIAK------------LTQLHYLYITHTNVSGAIP 118

Query: 153 AELVTDLVALRSLNLFHNHFKEKFPGSI 180
             L + +  L +L+  +N      P SI
Sbjct: 119 DFL-SQIKTLVTLDFSYNALSGTLPPSI 145

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.4 bits (165), Expect = 1e-13
 Identities = 36/188 (19%), Positives = 59/188 (31%), Gaps = 34/188 (18%)

Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEG- 58
           P+   P    ++  ++LS+NQ +    E                + L   ++  N+L   
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELF-----------STGSPLSSINLMGNMLTEI 472

Query: 59  ------KLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLS 112
                     +F       SI L   NK   + ++   F      L  L  +D++ N+ S
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLR-FNK---LTKLSDDFRATT--LPYLVGIDLSYNSFS 526

Query: 113 GAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHF 172
              P    NSS  K         +    D   N      P  + T   +L  L +  N  
Sbjct: 527 K-FPTQPLNSSTLKG------FGIRNQRDAQGNRTLREWPEGI-TLCPSLTQLQIGSNDI 578

Query: 173 KEKFPGSI 180
             K    I
Sbjct: 579 -RKVNEKI 585

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.4 bits (165), Expect = 1e-13
 Identities = 36/185 (19%), Positives = 61/185 (32%), Gaps = 27/185 (14%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWI--------SRINCTISSGLGNLTSLKH-SIS 52
           +      L+ LR   + ++ F +              ++   T      NL  L    + 
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257

Query: 53  YNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSR--DNWTLRSLQILDIACNN 110
                 KLPT    L E + I+++  N+     ++   +    D      +QI+ I  NN
Sbjct: 258 NCPNLTKLPTFLKALPEMQLINVAC-NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316

Query: 111 L-SGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFH 169
           L +  +   +             +L          N   G LPA      + L SLNL +
Sbjct: 317 LKTFPVETSLQKMKK------LGMLEC------LYNQLEGKLPA--FGSEIKLASLNLAY 362

Query: 170 NHFKE 174
           N   E
Sbjct: 363 NQITE 367

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.7 bits (158), Expect = 8e-13
 Identities = 32/175 (18%), Positives = 59/175 (33%), Gaps = 25/175 (14%)

Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGK 59
           P+    + +  L  L+   NQ    +P              G+   L   +++YN +   
Sbjct: 321 PVETSLQKMKKLGMLECLYNQLEGKLPA------------FGSEIKLASLNLAYNQITEI 368

Query: 60  LPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI 119
                G   +  ++S +  NK + I  IF + S     +  +  +D + N +        
Sbjct: 369 PANFCGFTEQVENLSFAH-NKLKYIPNIFDAKS-----VSVMSAIDFSYNEIGSVDGKNF 422

Query: 120 SNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174
                         ++ + +   S N  S   P EL +    L S+NL  N   E
Sbjct: 423 DPLDP--TPFKGINVSSINL---SNNQISK-FPKELFSTGSPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 20/198 (10%), Positives = 44/198 (22%), Gaps = 34/198 (17%)

Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHS-ISYNVLEGK 59
            +P+    L+ L  L L  +                   G+    S +         +  
Sbjct: 96  RVPDAIGQLTELEVLALGSHGEKVNERL-------FGPKGISANMSDEQKQKMRMHYQKT 148

Query: 60  LPTSFGRLREPR--SISLSWANKSQEILEIFHSFSRDNW----------------TLRSL 101
                 R          ++   + + I +      +D                   L  L
Sbjct: 149 FVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKL 208

Query: 102 QILDIACNNLSGAIPACISNSSARKEVGYTSILNL-------LRITDRSKNNFSGVLPAE 154
           +   +  +            +   +        +L       L   +         LP  
Sbjct: 209 RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF 268

Query: 155 LVTDLVALRSLNLFHNHF 172
           L   L  ++ +N+  N  
Sbjct: 269 LK-ALPEMQLINVACNRG 285

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 18/183 (9%), Positives = 58/183 (31%), Gaps = 25/183 (13%)

Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVL-EG 58
            +P   + L  ++ ++++ N+   +  +     +    +       ++   I YN L   
Sbjct: 264 KLPTFLKALPEMQLINVACNRG-ISGEQLKD--DWQALADAPVGEKIQIIYIGYNNLKTF 320

Query: 59  KLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPAC 118
            + TS  ++++   +   + N+   +     +F         L  L++A N ++      
Sbjct: 321 PVETSLQKMKKLGMLECLY-NQ---LEGKLPAFGS----EIKLASLNLAYNQITEIPANF 372

Query: 119 ISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPG 178
              +           +  L     + N    +        +  + +++  +N        
Sbjct: 373 CGFTEQ---------VENLSF---AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420

Query: 179 SIH 181
           +  
Sbjct: 421 NFD 423

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 15/143 (10%), Positives = 36/143 (25%), Gaps = 32/143 (22%)

Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCT--------------ISSGLGNLTS 46
                 +N   L  +DL  N+  + + +                        +   N ++
Sbjct: 479 DENENFKNTYLLTSIDLRFNKL-TKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSST 537

Query: 47  LKH-------SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLR 99
           LK            N    + P           + +   N  +++         +     
Sbjct: 538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS-NDIRKV---------NEKITP 587

Query: 100 SLQILDIACNNLSGAIPACISNS 122
           ++ +LDI  N       + +   
Sbjct: 588 NISVLDIKDNPNISIDLSYVCPY 610

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 30/188 (15%), Positives = 51/188 (27%), Gaps = 38/188 (20%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKL 60
                   S L  ++L  N   + IP+   +     +    N   L    + +N L   L
Sbjct: 449 PKELFSTGSPLSSINLMGNML-TEIPKNSLK---DENENFKNTYLLTSIDLRFNKLTK-L 503

Query: 61  PTSF--GRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDI------ACNNLS 112
              F    L     I LS  N        F  F        +L+   I        N   
Sbjct: 504 SDDFRATTLPYLVGIDLS-YNS-------FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTL 555

Query: 113 GAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHF 172
              P  I+   +         L  L+I     N+    +  ++      +  L++  N  
Sbjct: 556 REWPEGITLCPS---------LTQLQI---GSNDIRK-VNEKI---TPNISVLDIKDNPN 599

Query: 173 KEKFPGSI 180
                  +
Sbjct: 600 ISIDLSYV 607

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.2 bits (164), Expect = 1e-13
 Identities = 25/173 (14%), Positives = 52/173 (30%), Gaps = 25/173 (14%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLP 61
           I    + L+ L+ +  +++ F                     +     +  Y        
Sbjct: 440 ISKAIQRLTKLQIIYFANSPFTYDNIA---------------VDWEDANSDYAKQYENEE 484

Query: 62  TSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISN 121
            S+  L++   + L       ++ +  +        L  LQ L+IACN    A       
Sbjct: 485 LSWSNLKDLTDVELYNCPNMTQLPDFLYD-------LPELQSLNIACNRGISAAQLKADW 537

Query: 122 SSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174
           +    +         ++I     NN      +  +  +V L  L+  HN  + 
Sbjct: 538 TRLADDEDT---GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH 587

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.3 bits (159), Expect = 6e-13
 Identities = 29/181 (16%), Positives = 56/181 (30%), Gaps = 31/181 (17%)

Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLE--- 57
                     +   + LS N+      E  +            ++++   +S N++    
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFAT--------GSPISTI--ILSNNLMTSIP 713

Query: 58  ----GKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSG 113
                    ++       +I L + NK   + + F +      TL  L  +D++ N  S 
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRF-NKLTSLSDDFRA-----TTLPYLSNMDVSYNCFSS 767

Query: 114 AIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK 173
             P    NSS  K         +    D   N      P  + T   +L  L +  N  +
Sbjct: 768 -FPTQPLNSSQLKA------FGIRHQRDAEGNRILRQWPTGI-TTCPSLIQLQIGSNDIR 819

Query: 174 E 174
           +
Sbjct: 820 K 820

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.1 bits (143), Expect = 7e-11
 Identities = 31/175 (17%), Positives = 53/175 (30%), Gaps = 28/175 (16%)

Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGK 59
           P     + +  L  LD   N+    +               G    L    + YN +E  
Sbjct: 564 PASASLQKMVKLGLLDCVHNKV-RHLEA------------FGTNVKLTDLKLDYNQIEEI 610

Query: 60  LPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI 119
                    +   +  S  NK + I  IF++ S     +  +  +D + N +       I
Sbjct: 611 PEDFCAFTDQVEGLGFSH-NKLKYIPNIFNAKS-----VYVMGSVDFSYNKIGS-EGRNI 663

Query: 120 SNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174
           S S    +    S + L      S N      P EL      + ++ L +N    
Sbjct: 664 SCSMDDYKGINASTVTL------SYNEIQK-FPTELFATGSPISTIILSNNLMTS 711

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.6 bits (139), Expect = 2e-10
 Identities = 22/197 (11%), Positives = 52/197 (26%), Gaps = 45/197 (22%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRI----------------------NCTISS 39
                 NL  L  ++L +    + +P+++  +                         ++ 
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 40  GLGNLTSLKH-SISYNVLEG-KLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWT 97
                  ++   + YN LE      S  ++ +   +     NK    +    +F      
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH-NK----VRHLEAFGT---- 593

Query: 98  LRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVT 157
              L  L +  N +   IP                  + +     S N    +       
Sbjct: 594 NVKLTDLKLDYNQIEE-IPEDFCAF-----------TDQVEGLGFSHNKLKYIPNIFNAK 641

Query: 158 DLVALRSLNLFHNHFKE 174
            +  + S++  +N    
Sbjct: 642 SVYVMGSVDFSYNKIGS 658

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.4 bits (123), Expect = 3e-08
 Identities = 25/195 (12%), Positives = 53/195 (27%), Gaps = 28/195 (14%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLP 61
           +P+    L+ L+ L    +    +   +    +  ++  +      +  + Y  +     
Sbjct: 339 VPDAIGQLTELKVLSFGTHSETVSGRLF---GDEELTPDMSEERKHRIRMHYKKMFLDYD 395

Query: 62  TSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWT----------------LRSLQILD 105
                       +++   + + I +      +D                   L  LQI+ 
Sbjct: 396 QRLNLSDL-LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIY 454

Query: 106 IACNNLSGAIPACISNSSARKEVGYTSI-------LNLLRITDRSKNNFSGVLPAELVTD 158
            A +  +    A     +                 L  L   +         LP  L  D
Sbjct: 455 FANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YD 513

Query: 159 LVALRSLNLFHNHFK 173
           L  L+SLN+  N   
Sbjct: 514 LPELQSLNIACNRGI 528

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 23/168 (13%), Positives = 45/168 (26%), Gaps = 27/168 (16%)

Query: 8   NLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGR 66
           N   +  L L+       +P+            +G LT LK  S   +            
Sbjct: 321 NNGRVTGLSLAGFGAKGRVPD-----------AIGQLTELKVLSFGTHSETVSGRLFGDE 369

Query: 67  LREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARK 126
              P               ++F          + L + D+  + ++           +R 
Sbjct: 370 ELTPDMSEERKHRIRMHYKKMFLD------YDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 127 EVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174
            +  T I NL         N    +   +   L  L+ +   ++ F  
Sbjct: 424 SLKDTQIGNL--------TNRITFISKAI-QRLTKLQIIYFANSPFTY 462

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 23/147 (15%), Positives = 41/147 (27%), Gaps = 33/147 (22%)

Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCT--------------ISSGLGNLTS 46
           P     +N   L  +DL  N+  +++ +                        +   N + 
Sbjct: 719 PKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQ 777

Query: 47  LKH-------SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLR 99
           LK            N +  + PT          + +   N  +++         D     
Sbjct: 778 LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS-NDIRKV---------DEKLTP 827

Query: 100 SLQILDIACNNL-SGAIPACISNSSAR 125
            L ILDIA N   S  + +      A 
Sbjct: 828 QLYILDIADNPNISIDVTSVCPYIEAG 854

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.0 bits (159), Expect = 7e-13
 Identities = 32/181 (17%), Positives = 61/181 (33%), Gaps = 18/181 (9%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKL 60
             +    L ++RYL+L  +    +I   ++ +          L  L+H ++  N + G  
Sbjct: 288 FSHSLHGLFNVRYLNLKRSFTKQSIS--LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK 345

Query: 61  PTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACIS 120
              F  L   + +SLS  + +        +F   +     L IL++  N +S       S
Sbjct: 346 SNMFTGLINLKYLSLSN-SFTSLRTLTNETFV--SLAHSPLHILNLTKNKISKIESDAFS 402

Query: 121 NSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180
                        L  L + D   N     L  +    L  +  + L +N + +    S 
Sbjct: 403 W------------LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450

Query: 181 H 181
            
Sbjct: 451 A 451

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 33/181 (18%), Positives = 60/181 (33%), Gaps = 25/181 (13%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKL 60
                  L +L+ L LS+N+  +   E +          +   +SLK   +S N ++   
Sbjct: 137 KLGTQVQLENLQELLLSNNKIQALKSEELD---------IFANSSLKKLELSSNQIKEFS 187

Query: 61  PTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACIS 120
           P  F  +     + L+       + E             S++ L ++ + LS        
Sbjct: 188 PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELA----NTSIRNLSLSNSQLSTTSNTTFL 243

Query: 121 NSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180
                        L +L +   S NN + V        L  L    L +N+ +  F  S+
Sbjct: 244 GLKWTN-------LTMLDL---SYNNLNVVGNDSF-AWLPQLEYFFLEYNNIQHLFSHSL 292

Query: 181 H 181
           H
Sbjct: 293 H 293

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 32/171 (18%), Positives = 55/171 (32%), Gaps = 33/171 (19%)

Query: 8   NLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLK------HSISYNVLEGKLP 61
            L +L  LDLS+N   +   + +         GL  L  L         +  +   G   
Sbjct: 478 PLRNLTILDLSNNNIANINDDML--------EGLEKLEILDLQHNNLARLWKHANPGGPI 529

Query: 62  TSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISN 121
                L     ++L      +  +E+F         L  L+I+D+  NNL+    +  +N
Sbjct: 530 YFLKGLSHLHILNLESNGFDEIPVEVFKD-------LFELKIIDLGLNNLNTLPASVFNN 582

Query: 122 SSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHF 172
                          L+  +  KN  + V           L  L++  N F
Sbjct: 583 ------------QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.9 bits (143), Expect = 9e-11
 Identities = 29/181 (16%), Positives = 57/181 (31%), Gaps = 29/181 (16%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLP 61
                   ++L  L L  N                      NL +L   +S+N L     
Sbjct: 89  SDKTFAFCTNLTELHLMSNSIQKIKNNPF--------VKQKNLITL--DLSHNGLSSTKL 138

Query: 62  TSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISN 121
            +  +L   + + LS  NK    ++   S   D +   SL+ L+++ N +    P C   
Sbjct: 139 GTQVQLENLQELLLSN-NK----IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193

Query: 122 SSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTD--LVALRSLNLFHNHFKEKFPGS 179
                       +  L     +       L  +L  +    ++R+L+L ++        +
Sbjct: 194 ------------IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 180 I 180
            
Sbjct: 242 F 242

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 27/182 (14%), Positives = 56/182 (30%), Gaps = 20/182 (10%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLP 61
            P     +  L  L L++ Q   ++ E +      +     ++ +L  S+S + L     
Sbjct: 187 SPGCFHAIGRLFGLFLNNVQLGPSLTEKL-----CLELANTSIRNL--SLSNSQLSTTSN 239

Query: 62  TSFGRLREP--RSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI 119
           T+F  L+      + LS+ N +    + F         L  L+   +  NN+       +
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW-------LPQLEYFFLEYNNIQHLFSHSL 292

Query: 120 SNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGS 179
                 + +   ++         S  +   +        L  L  LN+  N         
Sbjct: 293 HGLFNVRYL---NLKRSFTKQSISLASLPKIDDFSF-QWLKCLEHLNMEDNDIPGIKSNM 348

Query: 180 IH 181
             
Sbjct: 349 FT 350

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 37/175 (21%), Positives = 55/175 (31%), Gaps = 30/175 (17%)

Query: 8   NLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFGRL 67
             S L  LD+  N  +   PE            L  L  L  ++ +N L      +F   
Sbjct: 47  RYSQLTSLDVGFNTISKLEPELC--------QKLPMLKVL--NLQHNELSQLSDKTFAFC 96

Query: 68  REPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE 127
                + L   +  +     F          ++L  LD++ N LS             +E
Sbjct: 97  TNLTELHLMSNSIQKIKNNPFVK-------QKNLITLDLSHNGLSSTKLGTQVQLENLQE 149

Query: 128 VGYTSILNLLRITDRSKNNFSGVLPAEL-VTDLVALRSLNLFHNHFKEKFPGSIH 181
                 L L      S N    +   EL +    +L+ L L  N  KE  PG  H
Sbjct: 150 ------LLL------SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 33/171 (19%)

Query: 11  SLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFGRLREP 70
           S    D S  +  + +P+ +            N+T L  ++++N L      +F R  + 
Sbjct: 5   SHEVADCSHLKL-TQVPDDLPT----------NITVL--NLTHNQLRRLPAANFTRYSQL 51

Query: 71  RSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGY 130
            S+ + +   S+   E+          L  L++L++  N LS       +  +       
Sbjct: 52  TSLDVGFNTISKLEPELCQK-------LPMLKVLNLQHNELSQLSDKTFAFCTN------ 98

Query: 131 TSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSIH 181
              L  L +     N+   +           L +L+L HN       G+  
Sbjct: 99  ---LTELHL---MSNSIQKIKNNPF-VKQKNLITLDLSHNGLSSTKLGTQV 142

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 30/188 (15%), Positives = 62/188 (32%), Gaps = 29/188 (15%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKL 60
             N    L +L+YL LS++  +      +  +       L + + L   +++ N +    
Sbjct: 345 KSNMFTGLINLKYLSLSNSFTS------LRTLTNETFVSLAH-SPLHILNLTKNKISKIE 397

Query: 61  PTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACIS 120
             +F  L     + L   N+  + L     +      L ++  + ++ N          +
Sbjct: 398 SDAFSWLGHLEVLDLG-LNEIGQELT-GQEWRG----LENIFEIYLSYNKYLQLTRNSFA 451

Query: 121 N--------------SSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLN 166
                           +          L  L I D S NN +  +  +++  L  L  L+
Sbjct: 452 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILD 510

Query: 167 LFHNHFKE 174
           L HN+   
Sbjct: 511 LQHNNLAR 518

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 16/117 (13%)

Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKL 60
                 + LS L  L+L  N F+    E        +   L  L  +   +  N L    
Sbjct: 527 GPIYFLKGLSHLHILNLESNGFDEIPVE--------VFKDLFELKII--DLGLNNLNTLP 576

Query: 61  PTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPA 117
            + F      +S++L     +    ++F          R+L  LD+  N       +
Sbjct: 577 ASVFNNQVSLKSLNLQKNLITSVEKKVFGP------AFRNLTELDMRFNPFDCTCES 627

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 62.7 bits (153), Expect = 3e-12
 Identities = 34/182 (18%), Positives = 63/182 (34%), Gaps = 31/182 (17%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKL 60
            P+    LS L+++ +        +P+ +                L+  +++ N L   L
Sbjct: 96  FPDQAFRLSHLQHMTIDAAGLME-LPDTM-----------QQFAGLETLTLARNPLR-AL 142

Query: 61  PTSFGRLREPRSISLSWANKSQEILEIF--HSFSRDNWTLRSLQILDIACNNLSGAIPAC 118
           P S   L   R +S+    +  E+ E       S ++  L +LQ L +    +  ++PA 
Sbjct: 143 PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS 201

Query: 119 ISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPG 178
           I+N            L  L+      +  S  L   +   L  L  L+L        +P 
Sbjct: 202 IAN------------LQNLKSLKIRNSPLSA-LGPAI-HHLPKLEELDLRGCTALRNYPP 247

Query: 179 SI 180
             
Sbjct: 248 IF 249

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.8 bits (143), Expect = 6e-11
 Identities = 30/180 (16%), Positives = 58/180 (32%), Gaps = 25/180 (13%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKL 60
           +P    +L+ LR L +      + +PE ++  +   S     L +L+   + +  +   L
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLA--STDASGEHQGLVNLQSLRLEWTGIR-SL 198

Query: 61  PTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACIS 120
           P S   L+  +S+ +   +    +    H        L  L+ LD+         P    
Sbjct: 199 PASIANLQNLKSLKIRN-SPLSALGPAIHH-------LPKLEELDLRGCTALRNYPPIFG 250

Query: 121 NSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180
                           L+       +    LP ++   L  L  L+L       + P  I
Sbjct: 251 G------------RAPLKRLILKDCSNLLTLPLDI-HRLTQLEKLDLRGCVNLSRLPSLI 297

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.9 bits (107), Expect = 4e-06
 Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 23/134 (17%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINC------------TISSGLGNLTSLKH 49
                + L +L+ L L       ++P  I+ +               +   + +L  L+ 
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEE 233

Query: 50  -SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEI-LEIFHSFSRDNWTLRSLQILDIA 107
             +         P  FG     + + L   +    + L+I          L  L+ LD+ 
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR--------LTQLEKLDLR 285

Query: 108 CNNLSGAIPACISN 121
                  +P+ I+ 
Sbjct: 286 GCVNLSRLPSLIAQ 299

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 23/182 (12%), Positives = 46/182 (25%), Gaps = 30/182 (16%)

Query: 8   NLSSLRYLDLSDNQFNSTIPEWISRIN---------CTISSGLGNLTSLKHSISYNVLEG 58
           + S    L    +       + +S+              +    N  + +          
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK 69

Query: 59  KLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPAC 118
                     +P  ++L   +           F    + L  LQ + I    L   +P  
Sbjct: 70  ATADLLEDATQPGRVALELRSVP------LPQFPDQAFRLSHLQHMTIDAAGLM-ELPDT 122

Query: 119 ISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPG 178
           +                 L     ++N     LPA +   L  LR L++       + P 
Sbjct: 123 MQQ------------FAGLETLTLARNPLR-ALPASI-ASLNRLRELSIRACPELTELPE 168

Query: 179 SI 180
            +
Sbjct: 169 PL 170

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 14/89 (15%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINC-------------TISSGLGNLTSLK 48
           +     +L  L  LDL         P                     T+   +  LT L+
Sbjct: 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE 280

Query: 49  H-SISYNVLEGKLPTSFGRLREPRSISLS 76
              +   V   +LP+   +L     I + 
Sbjct: 281 KLDLRGCVNLSRLPSLIAQLPANCIILVP 309

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 38/182 (20%), Positives = 68/182 (37%), Gaps = 31/182 (17%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKL 60
                 +L SL +LDLS N  +              S      TSLK+  +S+N +   +
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGC---------CSQSDFGTTSLKYLDLSFNGVIT-M 388

Query: 61  PTSFGRLREPRSISLSWANKSQEI-LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI 119
            ++F  L +   +    +N  Q     +F S       LR+L  LDI+  +   A     
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS-------LRNLIYLDISHTHTRVAFNGIF 441

Query: 120 SNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGS 179
           +             L+ L +   + N+F      ++ T+L  L  L+L     ++  P +
Sbjct: 442 NG------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489

Query: 180 IH 181
            +
Sbjct: 490 FN 491

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.9 bits (143), Expect = 7e-11
 Identities = 33/181 (18%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKL 60
           + +    L  L +LD   +         +            +L +L +  IS+       
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSV----------FLSLRNLIYLDISHTHTRVAF 437

Query: 61  PTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWT-LRSLQILDIACNNLSGAIPACI 119
              F  L     + ++  N          +F  D +T LR+L  LD++   L    P   
Sbjct: 438 NGIFNGLSSLEVLKMA-GNS------FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 120 SNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGS 179
           ++ S+ +       LN+      S NNF  +        L +L+ L+   NH        
Sbjct: 491 NSLSSLQV------LNM------SHNNFFSLDTFPY-KCLNSLQVLDYSLNHIMTSKKQE 537

Query: 180 I 180
           +
Sbjct: 538 L 538

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.9 bits (143), Expect = 8e-11
 Identities = 32/177 (18%), Positives = 55/177 (31%), Gaps = 32/177 (18%)

Query: 6   PENL-SSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTS 63
           P+NL  S + LDLS N                      +   L+   +S   ++     +
Sbjct: 23  PDNLPFSTKNLDLSFNPLRHLGS-----------YSFFSFPELQVLDLSRCEIQTIEDGA 71

Query: 64  FGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSS 123
           +  L    ++ L+        L  F         L SLQ L     NL+      I +  
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSG-------LSSLQKLVAVETNLASLENFPIGH-- 122

Query: 124 ARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180
                     L  L+  + + N        E  ++L  L  L+L  N  +  +   +
Sbjct: 123 ----------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 40/167 (23%), Positives = 58/167 (34%), Gaps = 32/167 (19%)

Query: 8   NLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKL-PTSFG 65
           +L +L YLD+S                         L+SL+   ++ N  +    P  F 
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGI-----------FNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 66  RLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSAR 125
            LR    + LS     Q     F+S       L SLQ+L+++ NN               
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNS-------LSSLQVLNMSHNNFFSLDTFPYKC---- 516

Query: 126 KEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHF 172
                   LN L++ D S N+       EL     +L  LNL  N F
Sbjct: 517 --------LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.2 bits (136), Expect = 7e-10
 Identities = 28/195 (14%), Positives = 55/195 (28%), Gaps = 35/195 (17%)

Query: 8   NLSSLRYLDLSDNQFNSTIPEWIS-------------RINCTISSGLGNLTSLKH-SISY 53
           +   L+ LDLS  +  +                     I          L+SL+      
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 54  NVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSG 113
             L        G L+  + ++++  N  Q   ++   FS     L +L+ LD++ N +  
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAH-NLIQSF-KLPEYFS----NLTNLEHLDLSSNKIQS 163

Query: 114 AIPACISNSSARKEVGYT-------------SILNLLRIT--DRSKNNFSGVLPAELVTD 158
                +        +  +                  +R+       N  S  +    +  
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 223

Query: 159 LVALRSLNLFHNHFK 173
           L  L    L    F+
Sbjct: 224 LAGLEVHRLVLGEFR 238

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 32/204 (15%), Positives = 59/204 (28%), Gaps = 44/204 (21%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKL 60
                 +L +L+ L+++ N   S            +     NLT+L+H  +S N ++   
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFK----------LPEYFSNLTNLEHLDLSSNKIQSIY 165

Query: 61  PTSFGRLRE----PRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIP 116
            T    L +      S+ LS    +      F            L  L +  N  S  + 
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI--------RLHKLTLRNNFDSLNVM 217

Query: 117 ACISNSSARKEV------GYTSILNLLRIT---------------DRSKNNFSGVLPAEL 155
                  A  EV       + +  NL +                   +  ++      +L
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277

Query: 156 VTDLVALRSLNLFHNHFKEKFPGS 179
              L  + S +L     +     S
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFS 301

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 9e-07
 Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 18/117 (15%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKL 60
           +P+    L +L +LDLS  Q     P               +L+SL+  ++S+N      
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAF-----------NSLSSLQVLNMSHNNFFSLD 510

Query: 61  PTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPA 117
              +  L   + +  S  +      +    F        SL  L++  N+ +     
Sbjct: 511 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHF------PSSLAFLNLTQNDFACTCEH 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.8 bits (135), Expect = 8e-10
 Identities = 35/181 (19%), Positives = 55/181 (30%), Gaps = 28/181 (15%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLP 61
           +P+G   LS+L+ L LS N+           +    +S   +LT L  SI  N    +L 
Sbjct: 293 LPSGLVGLSTLKKLVLSANK--------FENLCQISASNFPSLTHL--SIKGNTKRLELG 342

Query: 62  T-SFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACIS 120
           T     L   R + LS  +  +               L  LQ L+++ N           
Sbjct: 343 TGCLENLENLRELDLSH-DDIETSDCCNLQLRN----LSHLQSLNLSYNEPLSLKTEAFK 397

Query: 121 NSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180
                           L + D +              +L  L+ LNL H+          
Sbjct: 398 E------------CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445

Query: 181 H 181
            
Sbjct: 446 D 446

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 35/168 (20%), Positives = 59/168 (35%), Gaps = 28/168 (16%)

Query: 7   ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTS-FG 65
            NLS L+ L+LS N+  S   E               L  L   +++  L+ K   S F 
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFK--------ECPQLELL--DLAFTRLKVKDAQSPFQ 422

Query: 66  RLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSAR 125
            L   + ++LS +       ++F         L +LQ L++  N+         ++    
Sbjct: 423 NLHLLKVLNLSHSLLDISSEQLFDG-------LPALQHLNLQGNHFPKGNIQKTNSLQT- 474

Query: 126 KEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK 173
                   L  L I   S  + S  +     T L  +  ++L HN   
Sbjct: 475 --------LGRLEILVLSFCDLSS-IDQHAFTSLKMMNHVDLSHNRLT 513

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 33/178 (18%), Positives = 59/178 (33%), Gaps = 30/178 (16%)

Query: 7   ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFG 65
           ENL +LR LDLS +         I   +C     L NL+ L+  ++SYN        +F 
Sbjct: 347 ENLENLRELDLSHDD--------IETSDCCNLQ-LRNLSHLQSLNLSYNEPLSLKTEAFK 397

Query: 66  RLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSAR 125
              +   + L++      + +    F      L  L++L+++ + L  +           
Sbjct: 398 ECPQLELLDLAFTRLK--VKDAQSPFQN----LHLLKVLNLSHSLLDISSEQLFDG---- 447

Query: 126 KEVGYTSILNLLRITDRSKNNFSGV--LPAELVTDLVALRSLNLFHNHFKEKFPGSIH 181
                   L  L+  +   N+F          +  L  L  L L           +  
Sbjct: 448 --------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 32/184 (17%), Positives = 65/184 (35%), Gaps = 29/184 (15%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKL 60
                +    L  LDL+  +      +          S   NL  LK  ++S+++L+   
Sbjct: 392 KTEAFKECPQLELLDLAFTRLKVKDAQ----------SPFQNLHLLKVLNLSHSLLDISS 441

Query: 61  PTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACIS 120
              F  L   + ++L   +  +  ++  +S       L  L+IL ++  +LS       +
Sbjct: 442 EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT----LGRLEILVLSFCDLSSIDQHAFT 497

Query: 121 NSSARKEV------------GYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLF 168
           +      V               S L  + + + + N+ S  +   L+  L   R++NL 
Sbjct: 498 SLKMMNHVDLSHNRLTSSSIEALSHLKGIYL-NLASNHISI-ILPSLLPILSQQRTINLR 555

Query: 169 HNHF 172
            N  
Sbjct: 556 QNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 26/190 (13%), Positives = 52/190 (27%), Gaps = 38/190 (20%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEW------------------ISRINCTISSGLGN 43
           I  G  + +  + L+    Q    I +                      I+  +  GL  
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253

Query: 44  LTSLKHSISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQI 103
           ++    ++  +        +F      + + L+      E+             L +L+ 
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTA-THLSELPSGLVG-------LSTLKK 305

Query: 104 LDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALR 163
           L ++ N          SN               L       N     L    + +L  LR
Sbjct: 306 LVLSANKFENLCQISASN------------FPSLTHLSIKGNTKRLELGTGCLENLENLR 353

Query: 164 SLNLFHNHFK 173
            L+L H+  +
Sbjct: 354 ELDLSHDDIE 363

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 27/180 (15%), Positives = 48/180 (26%), Gaps = 31/180 (17%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKL 60
             +  ++   L  L L+ N                    L    +LKH       +    
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETA-----------LSGPKALKHLFFIQTGISSID 121

Query: 61  PTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACIS 120
                  +   S+ L   + S   L               L++LD   N +       +S
Sbjct: 122 FIPLHNQKTLESLYLGSNHISSIKLPKGFP-------TEKLKVLDFQNNAIHYLSKEDMS 174

Query: 121 NSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180
           +      +     LNL      + N+ +G+ P     D    +SLN             +
Sbjct: 175 SLQQATNL----SLNL------NGNDIAGIEP--GAFDSAVFQSLNFGGTQNLLVIFKGL 222

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 29/177 (16%), Positives = 53/177 (29%), Gaps = 31/177 (17%)

Query: 6   PENL-SSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSF 64
           P  L +S   L+ S N         +  I  T  S L NLT L   ++   +      +F
Sbjct: 28  PGTLPNSTECLEFSFNV--------LPTIQNTTFSRLINLTFL--DLTRCQIYWIHEDTF 77

Query: 65  GRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSA 124
                  ++ L+  N    + E   + S      ++L+ L      +S      + N   
Sbjct: 78  QSQHRLDTLVLTA-NPLIFMAE--TALSG----PKALKHLFFIQTGISSIDFIPLHN--- 127

Query: 125 RKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSIH 181
                       L       N+ S +   +       L+ L+  +N         + 
Sbjct: 128 ---------QKTLESLYLGSNHISSIKLPKG-FPTEKLKVLDFQNNAIHYLSKEDMS 174

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.9 bits (104), Expect = 9e-06
 Identities = 29/177 (16%), Positives = 52/177 (29%), Gaps = 34/177 (19%)

Query: 8   NLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGR 66
            L +L +LDL+  Q      +              +   L    ++ N L     T+   
Sbjct: 55  RLINLTFLDLTRCQIYWIHED-----------TFQSQHRLDTLVLTANPLIFMAETALSG 103

Query: 67  LREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARK 126
            +  + +       S       H+        ++L+ L +  N++S              
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHN-------QKTLESLYLGSNHISSIKLPKGFP----- 151

Query: 127 EVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALR--SLNLFHNHFKEKFPGSIH 181
                     L++ D   N     L  E ++ L      SLNL  N      PG+  
Sbjct: 152 -------TEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD 200

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 18/111 (16%)

Query: 3   PNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPT 62
            N  + L  L  L LS    +S              + L  +  +   +S+N L      
Sbjct: 469 TNSLQTLGRLEILVLSFCDLSSIDQHAF--------TSLKMMNHV--DLSHNRLTSSSIE 518

Query: 63  SFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSG 113
           +   L+    ++L+  + S  +  +          L   + +++  N L  
Sbjct: 519 ALSHLKG-IYLNLASNHISIILPSLLPI-------LSQQRTINLRQNPLDC 561

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.7 bits (129), Expect = 5e-09
 Identities = 36/176 (20%), Positives = 59/176 (33%), Gaps = 17/176 (9%)

Query: 3   PNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLP 61
                NL +L  LDLS NQ  S                 G L SLK    S N +     
Sbjct: 116 DGYFRNLKALTRLDLSKNQIRSLYLHPS----------FGKLNSLKSIDFSSNQIFLVCE 165

Query: 62  TSFGRLREP--RSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI 119
                L+       SL+ AN     + +      + +    L+ILD++ N  +  I    
Sbjct: 166 HELEPLQGKTLSFFSLA-ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF 224

Query: 120 SNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLV--ALRSLNLFHNHFK 173
           SN+ ++ +     + + +       +N            L   ++R L+L H    
Sbjct: 225 SNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVF 279

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.6 bits (121), Expect = 6e-08
 Identities = 24/176 (13%), Positives = 59/176 (33%), Gaps = 15/176 (8%)

Query: 7   ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFGR 66
             L +L+ L+LS N         +  +  +   GL  +  +   +  N +      +F  
Sbjct: 311 YGLDNLQVLNLSYNL--------LGELYSSNFYGLPKVAYI--DLQKNHIAIIQDQTFKF 360

Query: 67  LREPRSISLSWAN-KSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSAR 125
           L + +++ L      +   +            L +L  +++  N +  +     +     
Sbjct: 361 LEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILY 420

Query: 126 KEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSIH 181
             +        L+I   ++N FS     +  ++  +L  L L  N  +  +   + 
Sbjct: 421 FLLRVPH----LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.2 bits (120), Expect = 8e-08
 Identities = 34/177 (19%), Positives = 55/177 (31%), Gaps = 28/177 (15%)

Query: 6   PENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKL-PTSF 64
           P+ L++   L LS N         I  +  +    L  L  L   +        +   +F
Sbjct: 20  PQVLNTTERLLLSFNY--------IRTVTASSFPFLEQLQLL--ELGSQYTPLTIDKEAF 69

Query: 65  GRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSA 124
             L   R + L   +K   +     +F      L  L  L +    LS A+         
Sbjct: 70  RNLPNLRILDLGS-SKIYFLHP--DAFQG----LFHLFELRLYFCGLSDAVL-------- 114

Query: 125 RKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSIH 181
             + GY   L  L   D SKN    +        L +L+S++   N         + 
Sbjct: 115 --KDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE 169

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 39/176 (22%), Positives = 65/176 (36%), Gaps = 30/176 (17%)

Query: 7   ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFGR 66
           E L  L+ L+L+ N+        I++I      GL NL  L  ++SYN+L     ++F  
Sbjct: 287 ETLKDLKVLNLAYNK--------INKIADEAFYGLDNLQVL--NLSYNLLGELYSSNFYG 336

Query: 67  LREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARK 126
           L +   I L   N       I     +    L  LQ LD+  N L+      I    +  
Sbjct: 337 LPKVAYIDLQ-KNH------IAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIP 384

Query: 127 EV--GYTSILNL------LRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174
           ++      ++ L        +   S+N    +     +  +  L+ L L  N F  
Sbjct: 385 DIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS 440

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 39/173 (22%), Positives = 62/173 (35%), Gaps = 20/173 (11%)

Query: 8   NLSSLRYLDLSDNQFN-----STIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPT 62
            L  L+ LDL DN         +IP+     N  ++    NLT+    +S N LE     
Sbjct: 360 FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDIL 419

Query: 63  SF-GRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISN 121
            F  R+   + + L+             + S       SL+ L +  N L  A    +  
Sbjct: 420 YFLLRVPHLQILILN--QNRFSSCSGDQTPSE----NPSLEQLFLGENMLQLAWETELCW 473

Query: 122 SSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174
                       L+ L++   + N  +  LP  + + L ALR L+L  N    
Sbjct: 474 DVFEG-------LSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTV 518

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 28/181 (15%), Positives = 51/181 (28%), Gaps = 30/181 (16%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKL 60
           +      L  L++LD   +                  S   +L  L +  ISY   +   
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTE----------FSAFLSLEKLLYLDISYTNTKIDF 440

Query: 61  PTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACIS 120
              F  L    ++ ++  +     L    +         +L  LD++   L         
Sbjct: 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFA------NTTNLTFLDLSKCQLEQISWGVFD 494

Query: 121 NSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180
                +       LN+      S NN    L +     L +L +L+   N  +       
Sbjct: 495 TLHRLQL------LNM------SHNNLLF-LDSSHYNQLYSLSTLDCSFNRIETSKGILQ 541

Query: 181 H 181
           H
Sbjct: 542 H 542

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 38/180 (21%), Positives = 63/180 (35%), Gaps = 27/180 (15%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLP 61
           I      L SL YLDLS N         +S   C   S LG  +     +S+N     + 
Sbjct: 342 ISFKKVALPSLSYLDLSRNA--------LSFSGCCSYSDLGTNSLRHLDLSFNGAII-MS 392

Query: 62  TSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISN 121
            +F  L E + +     +  + + E F +F      L  L  LDI+  N           
Sbjct: 393 ANFMGLEELQHLDFQH-STLKRVTE-FSAFLS----LEKLLYLDISYTNTKIDFDGIFLG 446

Query: 122 SSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSIH 181
            ++         LN L++   + N+F     + +  +   L  L+L     ++   G   
Sbjct: 447 LTS---------LNTLKM---AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 31/171 (18%), Positives = 57/171 (33%), Gaps = 32/171 (18%)

Query: 6   PENL-SSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTS 63
           P+++ SS + +DLS N                      N + L+   +S   +E     +
Sbjct: 27  PDDIPSSTKNIDLSFNPLKILKSY-----------SFSNFSELQWLDLSRCEIETIEDKA 75

Query: 64  FGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSS 123
           +  L    ++ L+  N  Q       SFS     L SL+ L      L+      I    
Sbjct: 76  WHGLHHLSNLILTG-NPIQSFSP--GSFSG----LTSLENLVAVETKLASLESFPIGQ-- 126

Query: 124 ARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174
                     L  L+  + + N           ++L  L  ++L +N+ + 
Sbjct: 127 ----------LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 32/181 (17%), Positives = 56/181 (30%), Gaps = 31/181 (17%)

Query: 8   NLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFGRL 67
            L  L  L L+ N   S  P           SGL +L +L        L        G+L
Sbjct: 78  GLHHLSNLILTGNPIQSFSPGSF--------SGLTSLENL--VAVETKLASLESFPIGQL 127

Query: 68  REPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE 127
              + ++++  N      ++   FS     L +L  +D++ N +       +       +
Sbjct: 128 ITLKKLNVAH-NFIHSC-KLPAYFS----NLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181

Query: 128 VGYTSILNLLRIT---------------DRSKNNFSGVLPAELVTDLVALRSLNLFHNHF 172
           V  +  ++L  I                    N  S  +    + +L  L    L    F
Sbjct: 182 VNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241

Query: 173 K 173
           K
Sbjct: 242 K 242

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 31/201 (15%), Positives = 59/201 (29%), Gaps = 38/201 (18%)

Query: 2   IPNGP-ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGK 59
           + + P   L +L+ L+++ N  +S            + +   NLT+L H  +SYN ++  
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSC----------KLPAYFSNLTNLVHVDLSYNYIQTI 168

Query: 60  LPTSFGRLREPR----SISLSWANKSQEILEIFHSFS------RDN-----------WTL 98
                  LRE      S+ +S         + F          R N             L
Sbjct: 169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL 228

Query: 99  RSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTD 158
             L +  +            I   S  + +   +I         +  N       +    
Sbjct: 229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF----RLTYTNDFSDDIVKF-HC 283

Query: 159 LVALRSLNLFHNHFKEKFPGS 179
           L  + +++L     K      
Sbjct: 284 LANVSAMSLAGVSIKYLEDVP 304

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 29/203 (14%), Positives = 61/203 (30%), Gaps = 26/203 (12%)

Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKL 60
            +    +NL+ L    L   +F       +     +I  GL ++T  +  ++Y       
Sbjct: 220 IMKTCLQNLAGLHVHRLILGEFKDERN--LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDD 277

Query: 61  PTSFGRLREPRSISLSWANKSQEILEIFHSFSRDN-------------WTLRSLQILDIA 107
              F  L    ++SL+     + + ++   F   +               L  L+ L + 
Sbjct: 278 IVKFHCLANVSAMSLAG-VSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLT 336

Query: 108 CNNLSGAIPACI----------SNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVT 157
            N  S +                N+ +       S L    +     +    ++ +    
Sbjct: 337 MNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFM 396

Query: 158 DLVALRSLNLFHNHFKEKFPGSI 180
            L  L+ L+  H+  K     S 
Sbjct: 397 GLEELQHLDFQHSTLKRVTEFSA 419

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 27/191 (14%), Positives = 46/191 (24%), Gaps = 26/191 (13%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSI----SYNVLE 57
           I +       L  L L  N  +S I +       T    L  L   +  +        LE
Sbjct: 196 IQDQAFQGIKLHELTLRGNFNSSNIMK-------TCLQNLAGLHVHRLILGEFKDERNLE 248

Query: 58  GKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPA 117
              P+    L +                  F         L ++  + +A  ++      
Sbjct: 249 IFEPSIMEGLCDVTIDEFRLTY-----TNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDV 303

Query: 118 CISNSSARKEVGYTSI-------LNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHN 170
                     +    +       L  L+    + N  S          L +L  L+L  N
Sbjct: 304 PKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKK---VALPSLSYLDLSRN 360

Query: 171 HFKEKFPGSIH 181
                   S  
Sbjct: 361 ALSFSGCCSYS 371

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 34/168 (20%), Positives = 60/168 (35%), Gaps = 30/168 (17%)

Query: 7   ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFGR 66
           ++L +L+ L++ DN         +  I+    SGL +L  L  ++    L      +   
Sbjct: 125 QDLYNLKSLEVGDND--------LVYISHRAFSGLNSLEQL--TLEKCNLTSIPTEALSH 174

Query: 67  LREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARK 126
           L     + L        I +  +SF R    L  L++L+I+       +           
Sbjct: 175 LHGLIVLRLRH-LNINAIRD--YSFKR----LYRLKVLEISHWPYLDTMTPNCLYGLNLT 227

Query: 127 EVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174
                  L++      +  N +  +P   V  LV LR LNL +N    
Sbjct: 228 S------LSI------THCNLT-AVPYLAVRHLVYLRFLNLSYNPIST 262

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 39/174 (22%), Positives = 63/174 (36%), Gaps = 30/174 (17%)

Query: 7   ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFGR 66
            NL +LR L L  N+        +  I   + +GL NLT L   IS N +   L   F  
Sbjct: 77  NNLFNLRTLGLRSNR--------LKLIPLGVFTGLSNLTKL--DISENKIVILLDYMFQD 126

Query: 67  LREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARK 126
           L   +S+ +   N    I     +FS     L SL+ L +   NL+      +S+     
Sbjct: 127 LYNLKSLEVGD-NDLVYISH--RAFS----GLNSLEQLTLEKCNLTSIPTEALSH----- 174

Query: 127 EVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180
                  L+ L +      N +  +       L  L+ L + H  + +    + 
Sbjct: 175 -------LHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 30/167 (17%)

Query: 8   NLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFGRL 67
           +   L  L+L++N         +S +     + L NL +L   +  N L+      F  L
Sbjct: 54  SFPHLEELELNENI--------VSAVEPGAFNNLFNLRTL--GLRSNRLKLIPLGVFTGL 103

Query: 68  REPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE 127
                + +S  NK   +L+  + F      L +L+ L++  N+L        S       
Sbjct: 104 SNLTKLDISE-NKIVILLD--YMFQD----LYNLKSLEVGDNDLVYISHRAFSG------ 150

Query: 128 VGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174
                 LN L      K N +  +P E ++ L  L  L L H +   
Sbjct: 151 ------LNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINA 190

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 34/167 (20%), Positives = 63/167 (37%), Gaps = 33/167 (19%)

Query: 6   PENL-SSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSF 64
           PE + +  R LDL  N+        I  +N    +   +L  L   ++ N++    P +F
Sbjct: 27  PEGIPTETRLLDLGKNR--------IKTLNQDEFASFPHLEEL--ELNENIVSAVEPGAF 76

Query: 65  GRLREPRSISLSWANKSQEI-LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSS 123
             L   R++ L  +N+ + I L +F         L +L  LDI+ N +       + +  
Sbjct: 77  NNLFNLRTLGLR-SNRLKLIPLGVFTG-------LSNLTKLDISENKIV-----ILLDYM 123

Query: 124 ARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHN 170
            +        L  L+  +   N+    +     + L +L  L L   
Sbjct: 124 FQD-------LYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKC 162

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 33/169 (19%)

Query: 7   ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFGR 66
             L++L  L+L DN+        ++ I       L  L  L   +  N +E     +F R
Sbjct: 109 NGLANLNTLELFDNR--------LTTIPNGAFVYLSKLKEL--WLRNNPIESIPSYAFNR 158

Query: 67  LREPRSISLSWANKSQEI-LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSAR 125
           +   R + L    +   I    F         L +L+ L++A  NL   IP         
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEG-------LSNLRYLNLAMCNLR-EIPNLTPLIKLD 210

Query: 126 KEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174
           +       L+L      S N+ S  +       L+ L+ L +  +  + 
Sbjct: 211 E-------LDL------SGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQV 245

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 42/170 (24%), Positives = 64/170 (37%), Gaps = 32/170 (18%)

Query: 2   IPNG-PENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKL 60
           IP+     + SLR LDL +          +S I+     GL NL  L  +++   L  ++
Sbjct: 151 IPSYAFNRIPSLRRLDLGEL--KR-----LSYISEGAFEGLSNLRYL--NLAMCNLR-EI 200

Query: 61  PTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACIS 120
           P     L +   + LS  N    I     SF      L  LQ L +  + +         
Sbjct: 201 PN-LTPLIKLDELDLSG-NHLSAIRP--GSF----QGLMHLQKLWMIQSQIQVIERNAFD 252

Query: 121 NSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHN 170
           N            L  L   + + NN + +LP +L T L  L  ++L HN
Sbjct: 253 N------------LQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 37/171 (21%), Positives = 59/171 (34%), Gaps = 32/171 (18%)

Query: 6   PENLS-SLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSF 64
           P+ +S + R L+L +NQ        I  I       L +L  L   +S N +      +F
Sbjct: 59  PDGISTNTRLLNLHENQ--------IQIIKVNSFKHLRHLEIL--QLSRNHIRTIEIGAF 108

Query: 65  GRLREPRSISLSWANKSQEI-LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSS 123
             L    ++ L   N+   I    F         L  L+ L +  N +  +IP+   N  
Sbjct: 109 NGLANLNTLELFD-NRLTTIPNGAFVY-------LSKLKELWLRNNPIE-SIPSYAFNR- 158

Query: 124 ARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174
                     +  LR  D  +      +       L  LR LNL   + +E
Sbjct: 159 ----------IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.4 bits (120), Expect = 7e-08
 Identities = 33/178 (18%), Positives = 59/178 (33%), Gaps = 38/178 (21%)

Query: 6   PENLSSLRYLDLSDNQFNSTIPEWISRIN---------CTISSGLGNLTSLKHSISYNVL 56
           PE  +SL YLD  DN+ ++ +PE  + +            +      L  +  +   N L
Sbjct: 96  PELPASLEYLDACDNRLST-LPELPASLKHLDVDNNQLTMLPELPALLEYI--NADNNQL 152

Query: 57  EGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIP 116
              LP     L     +S+   N+   + E             SL+ LD++ N L  ++P
Sbjct: 153 T-MLPELPTSLEV---LSVRN-NQLTFLPE----------LPESLEALDVSTNLLE-SLP 196

Query: 117 ACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174
           A    +                     +N  +  +P  +   L    ++ L  N    
Sbjct: 197 AVPVRN--------HHSEETEIFFRCRENRIT-HIPENI-LSLDPTCTIILEDNPLSS 244

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 33/179 (18%), Positives = 61/179 (34%), Gaps = 31/179 (17%)

Query: 7   ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKL---PTS 63
             L  ++ + + +++        +  + C+ S  L +L  L   +S N++  +       
Sbjct: 307 SLLEKVKRITVENSK--------VFLVPCSFSQHLKSLEFL--DLSENLMVEEYLKNSAC 356

Query: 64  FGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSS 123
            G     +++ LS  N  + + +           L++L  LDI+ N       +C     
Sbjct: 357 KGAWPSLQTLVLSQ-NHLRSMQKTGEILLT----LKNLTSLDISRNTFHPMPDSCQWPEK 411

Query: 124 ARK--------EVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174
            R          V  T I   L + D S NN            L  L+ L +  N  K 
Sbjct: 412 MRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLD-----SFSLFLPRLQELYISRNKLKT 465

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 30/169 (17%)

Query: 7   ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVL-EGKLPTSFG 65
            +L SL +LDLSDN         +S ++ +    L +L  L  ++  N      + + F 
Sbjct: 71  YSLGSLEHLDLSDNH--------LSSLSSSWFGPLSSLKYL--NLMGNPYQTLGVTSLFP 120

Query: 66  RLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSAR 125
            L   +++ +       EI      F+     L SL  L+I   +L       + +    
Sbjct: 121 NLTNLQTLRIGNVETFSEIRR--IDFA----GLTSLNELEIKALSLRNYQSQSLKS---- 170

Query: 126 KEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174
                   +  +       +  +  L       L ++R L L   +   
Sbjct: 171 --------IRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 29/177 (16%), Positives = 51/177 (28%), Gaps = 31/177 (17%)

Query: 6   PENL-SSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSF 64
           P  L ++++ LDLS N+        I+ I         NL  L   +  + +      +F
Sbjct: 21  PSGLTAAMKSLDLSFNK--------ITYIGHGDLRACANLQVL--ILKSSRINTIEGDAF 70

Query: 65  GRLREPRSISLSWANKSQEI-LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSS 123
             L     + LS  N    +    F         L SL+ L++  N     +        
Sbjct: 71  YSLGSLEHLDLS-DNHLSSLSSSWFGP-------LSSLKYLNLMGNPYQ-TLGVT----- 116

Query: 124 ARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180
                     L  L+            +       L +L  L +     +     S+
Sbjct: 117 -----SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 31/165 (18%)

Query: 7   ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFGR 66
             L+SL  L+L DN         ++ I       L  L  L   +  N +E     +F R
Sbjct: 120 NGLASLNTLELFDNW--------LTVIPSGAFEYLSKLREL--WLRNNPIESIPSYAFNR 169

Query: 67  LREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARK 126
           +     + L    K + I E   +F      L +L+ L++   N+   +P         +
Sbjct: 170 VPSLMRLDLGELKKLEYISE--GAFEG----LFNLKYLNLGMCNIK-DMPNLTPLVGLEE 222

Query: 127 EVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNH 171
                  L +      S N+F   +       L +L+ L + ++ 
Sbjct: 223 -------LEM------SGNHFP-EIRPGSFHGLSSLKKLWVMNSQ 253

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 47/188 (25%), Positives = 67/188 (35%), Gaps = 44/188 (23%)

Query: 2   IPNG-PENLSSLRYLDLSDNQFNSTIPE------------------WISRINCTISSGLG 42
           IP+G  E LS LR L L +N    +IP                    +  I+     GL 
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196

Query: 43  NLTSLKHSISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQ 102
           NL  L  ++    ++  +P     L     + +S  N   EI     SF      L SL+
Sbjct: 197 NLKYL--NLGMCNIK-DMPN-LTPLVGLEELEMSG-NHFPEIRP--GSFHG----LSSLK 245

Query: 103 ILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVAL 162
            L +  + +S                     L  L   + + NN S  LP +L T L  L
Sbjct: 246 KLWVMNSQVSLIERNAFDG------------LASLVELNLAHNNLS-SLPHDLFTPLRYL 292

Query: 163 RSLNLFHN 170
             L+L HN
Sbjct: 293 VELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.9 bits (96), Expect = 8e-05
 Identities = 34/171 (19%), Positives = 57/171 (33%), Gaps = 32/171 (18%)

Query: 6   PENL-SSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSF 64
           P+ + S+ RYL+L +N         I  I       L +L  L+  +  N +      +F
Sbjct: 70  PQGIPSNTRYLNLMENN--------IQMIQADTFRHLHHLEVLQ--LGRNSIRQIEVGAF 119

Query: 65  GRLREPRSISLSWANKSQEI-LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSS 123
             L    ++ L   N    I    F         L  L+ L +  N +  +IP+   N  
Sbjct: 120 NGLASLNTLELFD-NWLTVIPSGAFEY-------LSKLRELWLRNNPIE-SIPSYAFNR- 169

Query: 124 ARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174
                     +  L   D  +      +       L  L+ LNL   + K+
Sbjct: 170 ----------VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 37/175 (21%), Positives = 58/175 (33%), Gaps = 34/175 (19%)

Query: 8   NLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLE--GKLPTSFG 65
            L SL+ L  + N+  +   E            L +L  L   +S N L   G    S  
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSE----------VDLPSLEFL--DLSRNGLSFKGCCSQSDF 370

Query: 66  RLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSAR 125
                + + LS+ N    +   F         L  L+ LD   +NL       +S  S  
Sbjct: 371 GTTSLKYLDLSF-NGVITMSSNFLG-------LEQLEHLDFQHSNLKQ-----MSEFSVF 417

Query: 126 KEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180
             +     L++      S  +   V    +   L +L  L +  N F+E F   I
Sbjct: 418 LSLRNLIYLDI------SHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 32/173 (18%), Positives = 60/173 (34%), Gaps = 32/173 (18%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLP 61
           + +    L  L +LD   +               ++   L NL  L   IS+        
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEF-------SVFLSLRNLIYL--DISHTHTRVAFN 438

Query: 62  TSFGRLREPRSISLSWANKSQEIL--EIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI 119
             F  L     + ++  N  QE    +IF         LR+L  LD++   L       +
Sbjct: 439 GIFNGLSSLEVLKMAG-NSFQENFLPDIFTE-------LRNLTFLDLSQCQLE-----QL 485

Query: 120 SNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHF 172
           S ++          L+ L++ + + N     +P  +   L +L+ + L  N +
Sbjct: 486 SPTAFNS-------LSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 33/175 (18%)

Query: 8   NLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGR 66
           +L SL +LDLS N         +S   C   S     TSLK+  +S+N +   + ++F  
Sbjct: 345 DLPSLEFLDLSRNG--------LSFKGCCSQS-DFGTTSLKYLDLSFNGVI-TMSSNFLG 394

Query: 67  LREPRSISLSWANKSQEILE--IFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSA 124
           L +   +     +  +++ E  +F S       LR+L  LDI+  +   A     +    
Sbjct: 395 LEQLEHLDFQH-SNLKQMSEFSVFLS-------LRNLIYLDISHTHTRVAFNGIFNG--- 443

Query: 125 RKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGS 179
                    L+ L +   + N+F      ++ T+L  L  L+L     ++  P +
Sbjct: 444 ---------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 38/168 (22%), Positives = 59/168 (35%), Gaps = 33/168 (19%)

Query: 8   NLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTS-FG 65
             +SL+YLDLS N   +            +SS    L  L+H    ++ L+     S F 
Sbjct: 371 GTTSLKYLDLSFNGVIT------------MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 66  RLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSAR 125
            LR    + +S    ++        F+     L SL++L +A N+        I      
Sbjct: 419 SLRNLIYLDIS-HTHTRVAFN--GIFNG----LSSLEVLKMAGNSFQENFLPDIFTE--- 468

Query: 126 KEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK 173
                   L  L   D S+      L       L +L+ LN+  N  K
Sbjct: 469 --------LRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 35/176 (19%), Positives = 60/176 (34%), Gaps = 30/176 (17%)

Query: 6   PENL-SSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSF 64
           P+NL  S + LDLS N         +  +          L  L   +S   ++     ++
Sbjct: 23  PDNLPFSTKNLDLSFNP--------LRHLGSYSFFSFPELQVL--DLSRCEIQTIEDGAY 72

Query: 65  GRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSA 124
             L    ++ L+  N  Q +     +FS     L SLQ L     NL+      I +   
Sbjct: 73  QSLSHLSTLILTG-NPIQSLAL--GAFSG----LSSLQKLVAVETNLASLENFPIGH--- 122

Query: 125 RKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180
                    L  L+  + + N        E  ++L  L  L+L  N  +  +   +
Sbjct: 123 ---------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 32/182 (17%), Positives = 57/182 (31%), Gaps = 31/182 (17%)

Query: 7   ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFGR 66
           ++LS L  L L+ N   S              SGL +L  L        L        G 
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAF--------SGLSSLQKL--VAVETNLASLENFPIGH 122

Query: 67  LREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARK 126
           L+  + ++++  N  Q   ++   FS     L +L+ LD++ N +       +       
Sbjct: 123 LKTLKELNVAH-NLIQSF-KLPEYFSN----LTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 127 EVGYTSILNLLRIT---------------DRSKNNFSGVLPAELVTDLVALRSLNLFHNH 171
            +  +  L+L  +                    N  S  +    +  L  L    L    
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 172 FK 173
           F+
Sbjct: 237 FR 238

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 35/172 (20%), Positives = 61/172 (35%), Gaps = 28/172 (16%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLP 61
           + +    L  L +LD   +     + E+      ++   L NL  L   IS+        
Sbjct: 93  MSSNFLGLEQLEHLDFQHSNL-KQMSEF------SVFLSLRNLIYL--DISHTHTRVAFN 143

Query: 62  TSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISN 121
             F  L     + ++  +  +  L     F+     LR+L  LD++   L   +     N
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLP--DIFTE----LRNLTFLDLSQCQLE-QLSPTAFN 196

Query: 122 SSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK 173
           S           L+ L++ + S NNF   L       L +L+ L+   NH  
Sbjct: 197 S-----------LSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 35/172 (20%), Positives = 66/172 (38%), Gaps = 35/172 (20%)

Query: 7   ENLSSLRYLDLSDNQFNSTIPEWISRINCTISS--GLGNLTSLKHSISYNVLEGKLPTSF 64
           + L+ L  L LS N         +S   C   S  G  +L  L   +S+N +   + ++F
Sbjct: 49  DKLTQLTKLSLSSNG--------LSFKGCCSQSDFGTTSLKYL--DLSFNGVI-TMSSNF 97

Query: 65  GRLREPRSISLSWANKSQEILE--IFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNS 122
             L +   +     +  +++ E  +F S       LR+L  LDI+  +   A     +  
Sbjct: 98  LGLEQLEHLDFQ-HSNLKQMSEFSVFLS-------LRNLIYLDISHTHTRVAFNGIFNG- 148

Query: 123 SARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174
                      L+ L +   + N+F      ++ T+L  L  L+L     ++
Sbjct: 149 -----------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 189

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 43/166 (25%), Positives = 65/166 (39%), Gaps = 30/166 (18%)

Query: 8   NLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYN-VLEGKLPTSFGR 66
           +L +L YLD+S                  I +GL +L  LK  ++ N   E  LP  F  
Sbjct: 124 SLRNLIYLDISHTH--------TRVAFNGIFNGLSSLEVLK--MAGNSFQENFLPDIFTE 173

Query: 67  LREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARK 126
           LR    + LS   + +++     +F+     L SLQ+L+++ NN                
Sbjct: 174 LRNLTFLDLSQ-CQLEQLSP--TAFNS----LSSLQVLNMSHNNFFSLDTFPYKC----- 221

Query: 127 EVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHF 172
                  LN L++ D S N+       EL     +L  LNL  N F
Sbjct: 222 -------LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 39/175 (22%), Positives = 58/175 (33%), Gaps = 33/175 (18%)

Query: 6   PENL-SSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGK--LPT 62
           P  + SS   L+L  N+        +  +   +   L  LT L  S+S N L  K     
Sbjct: 23  PTGIPSSATRLELESNK--------LQSLPHGVFDKLTQLTKL--SLSSNGLSFKGCCSQ 72

Query: 63  SFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNS 122
           S       + + LS+ N    +   F         L  L+ LD   +NL       +  S
Sbjct: 73  SDFGTTSLKYLDLSF-NGVITMSSNFLG-------LEQLEHLDFQHSNLKQMSEFSVFLS 124

Query: 123 SARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFP 177
                      L  L   D S  +   V    +   L +L  L +  N F+E F 
Sbjct: 125 -----------LRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFL 167

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 32/179 (17%), Positives = 52/179 (29%), Gaps = 20/179 (11%)

Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKL 60
           P P        L  L+L +  +  T   W++ +   +  GL  L     SI+        
Sbjct: 112 PPPLLEATGPDLNILNLRNVSWA-TRDAWLAELQQWLKPGLKVL-----SIAQAHSLNFS 165

Query: 61  PTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWT-LRSLQILDIACNNLSGAIPACI 119
                      ++ LS  N       +  +     +  L+ L + +      SG   A  
Sbjct: 166 CEQVRVFPALSTLDLSD-NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224

Query: 120 SNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPG 178
           +                L+  D S N+      A        L SLNL     K+   G
Sbjct: 225 AA------------RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG 271

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 25/166 (15%), Positives = 42/166 (25%), Gaps = 29/166 (17%)

Query: 8   NLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHS-ISYNVLEGKLPTSFGR 66
              +L  LDLSDN          +            L  L           G        
Sbjct: 171 VFPALSTLDLSDNPELGERGLISA----LCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226

Query: 67  LREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARK 126
             + + + LS  +           +         L  L+++   L   +P  +       
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDW------PSQLNSLNLSFTGLK-QVPKGLPAK---- 275

Query: 127 EVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHF 172
                     L + D S N            +L  + +L+L  N F
Sbjct: 276 ----------LSVLDLSYNRLDRN---PSPDELPQVGNLSLKGNPF 308

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 30/187 (16%), Positives = 56/187 (29%), Gaps = 40/187 (21%)

Query: 9   LSSLRYLDLSDNQFNS---TIPEWISRINC------TISSGLGNLTSLKHSISYNVLEGK 59
            +    L++ ++   +    +P  I+ +        ++ +    L +L   +S N L   
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTL--EVSGNQLT-S 95

Query: 60  LPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNW------TLRSLQILDIACNNLSG 113
           LP     L E    S    +       +   +   N           LQ L ++ N L+ 
Sbjct: 96  LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA- 154

Query: 114 AIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK 173
           ++PA  S                L       N  +  LP         L+ L++  N   
Sbjct: 155 SLPALPSE---------------LCKLWAYNNQLT-SLPML----PSGLQELSVSDNQLA 194

Query: 174 EKFPGSI 180
              P   
Sbjct: 195 S-LPTLP 200

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 35/169 (20%), Positives = 56/169 (33%), Gaps = 47/169 (27%)

Query: 6   PENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFG 65
           P   S L+ L +SDNQ  +++P                L  L      N L   LP    
Sbjct: 177 PMLPSGLQELSVSDNQL-ASLPT-----------LPSELYKL--WAYNNRLT-SLPALPS 221

Query: 66  RLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSAR 125
            L+E   + +S  N+   +                L+ L ++ N L+ ++P   S     
Sbjct: 222 GLKE---LIVSG-NRLTSLPV----------LPSELKELMVSGNRLT-SLPMLPSG---- 262

Query: 126 KEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174
                      L      +N  +  LP  L   L +  ++NL  N   E
Sbjct: 263 -----------LLSLSVYRNQLT-RLPESL-IHLSSETTVNLEGNPLSE 298

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 36/184 (19%), Positives = 57/184 (30%), Gaps = 49/184 (26%)

Query: 6   PENLSSLRYLDLSDNQFNSTIPEWISRI---------NCTISSGLGNLTSLKHSISYNVL 56
           P     LR L++S NQ  +++P     +            + +    L  L   I  N L
Sbjct: 77  PALPPELRTLEVSGNQL-TSLPVLPPGLLELSIFSNPLTHLPALPSGLCKL--WIFGNQL 133

Query: 57  EGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIP 116
              LP     L+E   +S+S  N+   +  +             L  L    N L+ ++P
Sbjct: 134 T-SLPVLPPGLQE---LSVS-DNQLASLPALPS----------ELCKLWAYNNQLT-SLP 177

Query: 117 ACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKF 176
              S             L  L +   S N  +  LP         L  L  ++N      
Sbjct: 178 MLPSG------------LQELSV---SDNQLA-SLPTLPSE----LYKLWAYNNRLTS-L 216

Query: 177 PGSI 180
           P   
Sbjct: 217 PALP 220

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 30/179 (16%), Positives = 49/179 (27%), Gaps = 45/179 (25%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINC------TISSGLGNLTSLKHSISYNV 55
           +P  P  L  L             +P  + ++        ++      L  L  S+S N 
Sbjct: 96  LPVLPPGLLELSIFSNPLTHL-PALPSGLCKLWIFGNQLTSLPVLPPGLQEL--SVSDNQ 152

Query: 56  LEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAI 115
           L   LP     L     +     N+   +                LQ L ++ N L+ ++
Sbjct: 153 LA-SLPALPSEL---CKLWAYN-NQLTSLPM----------LPSGLQELSVSDNQLA-SL 196

Query: 116 PACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174
           P   S                L       N  +  LPA        L+ L +  N    
Sbjct: 197 PTLPSE---------------LYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLTS 235

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 25/175 (14%), Positives = 55/175 (31%), Gaps = 28/175 (16%)

Query: 6   PENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFG 65
            +N +  +   ++D+         + +   ++     N+  L   +S N L         
Sbjct: 6   KQNGNRYKIEKVTDSS--------LKQALASLRQSAWNVKEL--DLSGNPLSQISAADLA 55

Query: 66  RLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACIS----- 120
              +   ++LS  N   E L++          L +L+ LD+  N +   +    S     
Sbjct: 56  PFTKLELLNLSS-NVLYETLDLES--------LSTLRTLDLNNNYVQ-ELLVGPSIETLH 105

Query: 121 -NSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174
             ++    V   S     +    + N  +  L          ++ L+L  N    
Sbjct: 106 AANNNISRVS-CSRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDT 158

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 23/169 (13%), Positives = 48/169 (28%), Gaps = 41/169 (24%)

Query: 7   ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFG 65
              + L  L+LS N       +            L +L++L+   ++ N +         
Sbjct: 55  APFTKLELLNLSSNVL-YETLD------------LESLSTLRTLDLNNNYV-----QELL 96

Query: 66  RLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSAR 125
                 ++  +  N    +              +  + + +A N ++             
Sbjct: 97  VGPSIETLHAA-NNNISRV---------SCSRGQGKKNIYLANNKITMLRDLDEGC---- 142

Query: 126 KEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174
                    + ++  D   N    V  AEL      L  LNL +N   +
Sbjct: 143 --------RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 18/169 (10%), Positives = 45/169 (26%), Gaps = 35/169 (20%)

Query: 6   PENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEG-KLPTSF 64
                  + + L++N+        I+ +          +  L   +  N ++        
Sbjct: 116 CSRGQGKKNIYLANNK--------ITMLRDLDEGCRSRVQYL--DLKLNEIDTVNFAELA 165

Query: 65  GRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSA 124
                   ++L + N   ++        +       L+ LD++ N L+  +     +   
Sbjct: 166 ASSDTLEHLNLQY-NFIYDV--------KGQVVFAKLKTLDLSSNKLA-FMGPEFQS--- 212

Query: 125 RKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK 173
                       +       N    ++   L      L   +L  N F 
Sbjct: 213 ---------AAGVTWISLRNNKLV-LIEKAL-RFSQNLEHFDLRGNGFH 250

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 30/168 (17%)

Query: 6   PENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFG 65
           P + SS  +L+ + N F  ++ +  S         L  L +L   +  N L+        
Sbjct: 349 PPSPSSFTFLNFTQNVFTDSVFQGCST--------LKRLQTL--ILQRNGLK-NFFKVAL 397

Query: 66  RLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSAR 125
             +     SL   + S   L   H++ R      S+ +L+++ N L+G++  C+      
Sbjct: 398 MTKNMS--SLETLDVSLNSLN-SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK--- 451

Query: 126 KEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK 173
                      +++ D   N     +P + VT L AL+ LN+  N  K
Sbjct: 452 -----------VKVLDLHNNRIM-SIPKD-VTHLQALQELNVASNQLK 486

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 36/164 (21%), Positives = 52/164 (31%), Gaps = 30/164 (18%)

Query: 7   ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFGR 66
             L  L  L L            +  +   +  GL  L  L   +  N L+     +F  
Sbjct: 102 HGLGRLHTLHLDRCG--------LQELGPGLFRGLAALQYL--YLQDNALQALPDDTFRD 151

Query: 67  LREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARK 126
           L     + L   N+   + E   +F      L SL  L +  N ++   P    +     
Sbjct: 152 LGNLTHLFLHG-NRISSVPE--RAFRG----LHSLDRLLLHQNRVAHVHPHAFRD----- 199

Query: 127 EVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHN 170
                  L  L       NN S  LP E +  L AL+ L L  N
Sbjct: 200 -------LGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 36/168 (21%), Positives = 52/168 (30%), Gaps = 31/168 (18%)

Query: 8   NLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLP-TSFGR 66
              +L  L L  N         ++RI+    +GL  L  L   +S N     +   +F  
Sbjct: 54  ACRNLTILWLHSNV--------LARIDAAAFTGLALLEQL--DLSDNAQLRSVDPATFHG 103

Query: 67  LREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARK 126
           L    ++ L      QE+      F      L +LQ L +  N L  A+P          
Sbjct: 104 LGRLHTLHLD-RCGLQELGP--GLFRG----LAALQYLYLQDNALQ-ALPDDTFRD---- 151

Query: 127 EVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174
                  L  L       N  S  +P      L +L  L L  N    
Sbjct: 152 -------LGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAH 191

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 36/164 (21%), Positives = 56/164 (34%), Gaps = 29/164 (17%)

Query: 7   ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFGR 66
             L+ L  LDLSDN         +  ++     GLG L +L   +    L+   P  F  
Sbjct: 77  TGLALLEQLDLSDN-------AQLRSVDPATFHGLGRLHTL--HLDRCGLQELGPGLFRG 127

Query: 67  LREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARK 126
           L   + + L   N  Q + +   +F      L +L  L +  N +S              
Sbjct: 128 LAALQYLYLQD-NALQALPD--DTFRD----LGNLTHLFLHGNRISSVPERAFRG----- 175

Query: 127 EVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHN 170
                  L+ L      +N  +  +      DL  L +L LF N
Sbjct: 176 -------LHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFAN 211

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 27/178 (15%), Positives = 61/178 (34%), Gaps = 30/178 (16%)

Query: 7   ENLSSLRYLDLSDNQFNSTIPEW--------------ISRINCTISSGLGNLTSLKHSIS 52
           + +  L Y+ ++D    +TIP+               I++++     GL NL  L   +S
Sbjct: 168 QGMKKLSYIRIADTNI-TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKL--GLS 224

Query: 53  YNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLS 112
           +N +      S       R + L+  NK  ++              + +Q++ +  NN+S
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNN-NKLVKVPGGLAD-------HKYIQVVYLHNNNIS 276

Query: 113 GAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHN 170
                 I ++        T   +   ++  S       +       +    ++ L + 
Sbjct: 277 -----AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 18/171 (10%), Positives = 49/171 (28%), Gaps = 25/171 (14%)

Query: 3   PNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPT 62
                 L+ L  L++  +         +          + N++ L   +        L  
Sbjct: 167 RKDFAGLTFLEELEIDASD--------LQSYEPKSLKSIQNVSHL--ILHMKQHILLLEI 216

Query: 63  SFGRLREPRSISLSWAN-KSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISN 121
                     + L   +  +    E+    +       + + + I   +L   +   ++ 
Sbjct: 217 FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQ 275

Query: 122 SSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHF 172
                       ++ L   + S+N     +P  +   L +L+ + L  N +
Sbjct: 276 ------------ISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.3 bits (97), Expect = 6e-05
 Identities = 30/166 (18%), Positives = 57/166 (34%), Gaps = 32/166 (19%)

Query: 8   NLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTS-FGR 66
           +L SL +LDLS N         +S ++ +    L +LT L  ++  N  +    TS F  
Sbjct: 98  SLGSLEHLDLSYNY--------LSNLSSSWFKPLSSLTFL--NLLGNPYKTLGETSLFSH 147

Query: 67  LREPRSISLSWANKSQEI-LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSAR 125
           L + + + +   +   +I  + F         L  L+ L+I  ++L  +       S   
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAG-------LTFLEELEIDASDLQ-SYEPKSLKS--- 196

Query: 126 KEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNH 171
                   +  +            +L    V    ++  L L    
Sbjct: 197 --------IQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTD 233

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 36/186 (19%), Positives = 64/186 (34%), Gaps = 35/186 (18%)

Query: 7   ENLSSLRYLDLSDNQFNSTIPEW-------------------ISRINCTISSGLGNLTSL 47
           + LSSL +L+L  N +  T+ E                     ++I     +GL  L  L
Sbjct: 121 KPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179

Query: 48  KHSISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIA 107
              I  + L+   P S   ++    + L    +   +LEIF           S++ L++ 
Sbjct: 180 --EIDASDLQSYEPKSLKSIQNVSHLILHM-KQHILLLEIF--VDV----TSSVECLELR 230

Query: 108 CNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNL 167
             +L     + +S       +   +    ++ITD S      +L       +  L  L  
Sbjct: 231 DTDLDTFHFSELSTGETNSLIKKFT-FRNVKITDESLFQVMKLL-----NQISGLLELEF 284

Query: 168 FHNHFK 173
             N  K
Sbjct: 285 SRNQLK 290

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 33/176 (18%), Positives = 60/176 (34%), Gaps = 31/176 (17%)

Query: 6   PENL-SSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSF 64
           P  L  +++ LDLS+N+        I+ I+ +      NL +L   ++ N +      SF
Sbjct: 47  PSGLTEAVKSLDLSNNR--------ITYISNSDLQRCVNLQAL--VLTSNGINTIEEDSF 96

Query: 65  GRLREPRSISLSWANKSQEI-LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSS 123
             L     + LS+ N    +    F         L SL  L++  N         +  +S
Sbjct: 97  SSLGSLEHLDLSY-NYLSNLSSSWFKP-------LSSLTFLNLLGNPYK-----TLGETS 143

Query: 124 ARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGS 179
               +    IL +         +    +  +    L  L  L +  +  +   P S
Sbjct: 144 LFSHLTKLQILRVGN------MDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 193

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 25/175 (14%), Positives = 53/175 (30%), Gaps = 28/175 (16%)

Query: 6   PENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFG 65
            +N +  +   ++D+     +          +     N+  L   +S N L         
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALAS--------LRQSAWNVKEL--DLSGNPLSQISAADLA 55

Query: 66  RLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACIS----- 120
              +   ++LS  N   E L++          L +L+ LD+  N +   +    S     
Sbjct: 56  PFTKLELLNLSS-NVLYETLDLES--------LSTLRTLDLNNNYVQ-ELLVGPSIETLH 105

Query: 121 -NSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174
             ++    V   S     +    + N  +  L          ++ L+L  N    
Sbjct: 106 AANNNISRVS-CSRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDT 158

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 23/169 (13%), Positives = 48/169 (28%), Gaps = 41/169 (24%)

Query: 7   ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFG 65
              + L  L+LS N       +            L +L++L+   ++ N +         
Sbjct: 55  APFTKLELLNLSSNVL-YETLD------------LESLSTLRTLDLNNNYV-----QELL 96

Query: 66  RLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSAR 125
                 ++  +  N    +              +  + + +A N ++             
Sbjct: 97  VGPSIETLHAAN-NNISRV---------SCSRGQGKKNIYLANNKITMLRDLDEGC---- 142

Query: 126 KEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174
                    + ++  D   N    V  AEL      L  LNL +N   +
Sbjct: 143 --------RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 35/169 (20%), Positives = 61/169 (36%), Gaps = 32/169 (18%)

Query: 6   PENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFG 65
           P  +S   +LD S+N         ++         L  L +L   +  N L+ +L     
Sbjct: 320 PSKISPFLHLDFSNNL--------LTDTVFENCGHLTELETL--ILQMNQLK-ELSKIAE 368

Query: 66  RLREPRSI-SLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSA 124
              + +S+  L  +  S    E     S      +SL  L+++ N L+  I  C      
Sbjct: 369 MTTQMKSLQQLDISQNSVSYDEKKGDCSW----TKSLLSLNMSSNILTDTIFRC------ 418

Query: 125 RKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK 173
                   +   +++ D   N     +P + V  L AL+ LN+  N  K
Sbjct: 419 --------LPPRIKVLDLHSNKIK-SIPKQ-VVKLEALQELNVASNQLK 457

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 34/175 (19%), Positives = 60/175 (34%), Gaps = 35/175 (20%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLP 61
           +P  P ++    Y+DLS N         I+ +N T  S L +L  L   +        + 
Sbjct: 25  VPELPAHV---NYVDLSLNS--------IAELNETSFSRLQDLQFL--KVEQQTPGLVIR 71

Query: 62  T-SFGRLREPRSISLSWANKSQEILE-IFHSFSRDNWTLRSLQILDIACNNL-SGAIPAC 118
             +F  L     + L   N+  ++    F+        L +L++L +   NL    +   
Sbjct: 72  NNTFRGLSSLIILKLD-YNQFLQLETGAFNG-------LANLEVLTLTQCNLDGAVLSG- 122

Query: 119 ISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK 173
                      +   L  L +     NN   + PA    ++     L+L  N  K
Sbjct: 123 ----------NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.3 bits (97), Expect = 8e-05
 Identities = 23/181 (12%), Positives = 58/181 (32%), Gaps = 17/181 (9%)

Query: 1   PIPNGP-ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGK 59
            +     + L+SL  L L DN      P        +    +     L   +++N ++  
Sbjct: 119 VLSGNFFKPLTSLEMLVLRDNNIKKIQPA-------SFFLNMRRFHVL--DLTFNKVKSI 169

Query: 60  LPTSFGRLREPRSISLS-WANKSQEILEIFHSFSRDN--WTLRSLQILDIACNNLSGAIP 116
                   +      L   +   Q++ E +  + +    +   S+  LD++ N    ++ 
Sbjct: 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA 229

Query: 117 ACISNSSARKEVGYTSI-LNLLRITDRSKNNFSGVLPAELVTDLVA--LRSLNLFHNHFK 173
               ++ A  ++    +  +    +     NF           L A  +++ +L  +   
Sbjct: 230 KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD-PDNFTFKGLEASGVKTCDLSKSKIF 288

Query: 174 E 174
            
Sbjct: 289 A 289

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.8 bits (99), Expect = 5e-05
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 40/169 (23%)

Query: 7   ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFG 65
            N++ L  L + +N+     P             L NL+ L    I  N +      +  
Sbjct: 218 ANMTRLNSLKIGNNKITDLSP-------------LANLSQLTWLEIGTNQISD--INAVK 262

Query: 66  RLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSAR 125
            L + + +++  +N+  +I  + +        L  L  L +  N L       I      
Sbjct: 263 DLTKLKMLNVG-SNQISDISVLNN--------LSQLNSLFLNNNQLGNEDMEVIGG---- 309

Query: 126 KEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174
                   L  L     S+N+ + + P   +  L  + S +  +   K+
Sbjct: 310 --------LTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 38.3 bits (90), Expect = 6e-04
 Identities = 28/169 (16%), Positives = 60/169 (35%), Gaps = 41/169 (24%)

Query: 7   ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFG 65
           +NL++LR L L+++  +   P             L NLT +   ++  N       +   
Sbjct: 107 QNLTNLRELYLNEDNISDISP-------------LANLTKMYSLNLGANHNL-SDLSPLS 152

Query: 66  RLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSAR 125
            +     ++++  +K +++  I          L  L  L +  N +    P  +++    
Sbjct: 153 NMTGLNYLTVTE-SKVKDVTPI--------ANLTDLYSLSLNYNQIEDISP--LAS---- 197

Query: 126 KEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174
                   L  L       N  + + P   V ++  L SL + +N   +
Sbjct: 198 --------LTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITD 235

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 37.9 bits (89), Expect = 8e-04
 Identities = 31/178 (17%), Positives = 63/178 (35%), Gaps = 37/178 (20%)

Query: 7   ENLSSLRYLDLSDNQFNSTIP-------EWISRINCTIS--SGLGNLTSLKH-SISYNVL 56
           E L++L YL+L+ NQ     P         +      I+  S L NLT+L+   ++ + +
Sbjct: 63  EYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNI 122

Query: 57  EGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIP 116
                +    L +  S++L   +   ++  + +        +  L  L +  + +    P
Sbjct: 123 SD--ISPLANLTKMYSLNLGANHNLSDLSPLSN--------MTGLNYLTVTESKVKDVTP 172

Query: 117 ACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174
             I+N            L  L     + N    + P   +  L +L     + N   +
Sbjct: 173 --IAN------------LTDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQITD 213

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 29/125 (23%)

Query: 6   PENLSSLRYLDLSDNQFNSTIPEWISRIN---------CTISSGLGNLTSLKHSISYNVL 56
            +   SL  L++S+N+    +P    R+            +     NL  L   + YN L
Sbjct: 313 CDLPPSLEELNVSNNKL-IELPALPPRLERLIASFNHLAEVPELPQNLKQL--HVEYNPL 369

Query: 57  EGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIP 116
             + P     +       L   +   E+ E            ++L+ L +  N L    P
Sbjct: 370 R-EFPDIPESVE-----DLRMNSHLAEVPE----------LPQNLKQLHVETNPLR-EFP 412

Query: 117 ACISN 121
               +
Sbjct: 413 DIPES 417

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 34/178 (19%), Positives = 55/178 (30%), Gaps = 37/178 (20%)

Query: 2   IPNGPENLSSLRYLDLSDNQFNSTIPE----WISRINCTISSGLGNLTSLKH-SISYNVL 56
           +P  P++L SL   + +    +   P      +S         L N + LK   +  N L
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSL 165

Query: 57  EGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIP 116
           + KLP     L     I+    N+    LE           L  L  +    N+L   +P
Sbjct: 166 K-KLPDLPPSLEF---IAAG-NNQ----LEELPELQN----LPFLTAIYADNNSLK-KLP 211

Query: 117 ACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174
               +               L       N     LP   + +L  L ++   +N  K 
Sbjct: 212 DLPLS---------------LESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLLKT 251

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 31/172 (18%), Positives = 54/172 (31%), Gaps = 31/172 (18%)

Query: 6   PENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPT-SF 64
           P    S + L L +          +  I     S L N++ +   +S +V   +L + SF
Sbjct: 27  PSLPPSTQTLKLIETH--------LRTIPSHAFSNLPNISRI--YVSIDVTLQQLESHSF 76

Query: 65  GRLREPRSISLSWANKSQEI-LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSS 123
             L +   I +        I  +           L  L+ L I    L    P      S
Sbjct: 77  YNLSKVTHIEIRNTRNLTYIDPDALKE-------LPLLKFLGIFNTGLK-MFPDLTKVYS 128

Query: 124 ARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVA-LRSLNLFHNHFKE 174
                      ++  I + + N +   +P      L     +L L++N F  
Sbjct: 129 ----------TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS 170

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.1 bits (97), Expect = 7e-05
 Identities = 26/174 (14%), Positives = 58/174 (33%), Gaps = 36/174 (20%)

Query: 7   ENLSSLRYLDLSDNQFNSTIP-------EWISRINCTIS--SGLGNLTSLKH-SISYNVL 56
             L++L  L+L++NQ     P        +++     IS  S + +LT L+      N +
Sbjct: 284 AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKV 343

Query: 57  EGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIP 116
                +S   L     +S    N+  ++  + +        L  +  L +     + A  
Sbjct: 344 SD--VSSLANLTNINWLSAGH-NQISDLTPLAN--------LTRITQLGLNDQAWTNAPV 392

Query: 117 ACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHN 170
                          +    + I +  KN    ++    ++D  +    ++  N
Sbjct: 393 ---------------NYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWN 431

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 22/167 (13%), Positives = 56/167 (33%), Gaps = 30/167 (17%)

Query: 8   NLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFGRL 67
            L++ + +   ++         + ++   +      +  L  +++   +E     +F   
Sbjct: 43  TLNNQKIVTFKNST--------MRKLPAALLDSFRQVELL--NLNDLQIEEIDTYAFAYA 92

Query: 68  REPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE 127
              + + +   N  + +    H F      +  L +L +  N+LS ++P  I ++     
Sbjct: 93  HTIQKLYMG-FNAIRYLPP--HVFQN----VPLLTVLVLERNDLS-SLPRGIFHN----- 139

Query: 128 VGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174
                    L     S NN    +  +      +L++L L  N    
Sbjct: 140 ------TPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH 179

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 30/175 (17%), Positives = 59/175 (33%), Gaps = 36/175 (20%)

Query: 8   NLSSLRYLDLSDNQFNSTIPE---------WISRINCTISSGLGNLTSLKH-SISYNVLE 57
              ++  LD S N   + +            +   N T ++ L N   L    +SYN LE
Sbjct: 203 IPIAVEELDASHNSI-NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE 261

Query: 58  GKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPA 117
             +   F +++    + +S  N+   +             + +L++LD++ N+L   +  
Sbjct: 262 KIMYHPFVKMQRLERLYIS-NNRLVALNLYGQP-------IPTLKVLDLSHNHLL-HVER 312

Query: 118 CISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHF 172
                            + L       N+    L          L++L L HN +
Sbjct: 313 NQPQ------------FDRLENLYLDHNSIV-TLKLST---HHTLKNLTLSHNDW 351

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 16/107 (14%)

Query: 7   ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFGR 66
             + +LRYLDLS N         +  ++  + S L  L  L   +  N +      +F  
Sbjct: 85  VPVPNLRYLDLSSNH--------LHTLDEFLFSDLQALEVL--LLYNNHIVVVDRNAFED 134

Query: 67  LREPRSISLSWANKSQEI-LEIFHSFSRDNWTLRSLQILDIACNNLS 112
           + + + + LS  N+     +E+    ++    L  L +LD++ N L 
Sbjct: 135 MAQLQKLYLS-QNQISRFPVELIKDGNK----LPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 36/167 (21%), Positives = 57/167 (34%), Gaps = 29/167 (17%)

Query: 8   NLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFGRL 67
            L++L  L LS N         ++ I+      + NL  L   +S N L       F  L
Sbjct: 62  RLTNLHSLLLSHNH--------LNFISSEAFVPVPNLRYLD--LSSNHLHTLDEFLFSDL 111

Query: 68  REPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE 127
           +    + L   N    +    ++F      +  LQ L ++ N +S      I + +    
Sbjct: 112 QALEVLLLY-NNHIVVVDR--NAFED----MAQLQKLYLSQNQISRFPVELIKDGNK--- 161

Query: 128 VGYTSILNLLRITDRSKNNFSGVLPAELVTDLVAL--RSLNLFHNHF 172
                 L  L + D S N     LP   +  L A     L L +N  
Sbjct: 162 ------LPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPL 201

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 38.0 bits (89), Expect = 6e-04
 Identities = 34/195 (17%), Positives = 64/195 (32%), Gaps = 42/195 (21%)

Query: 8   NLSSLRYLDLSDNQFNSTIPE-----------------WISRINCTISSGLGNLTSLKHS 50
           +   L+ LDLS  +   TI +                  I  +     SGL +L  L   
Sbjct: 50  SFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL--V 106

Query: 51  ISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNN 110
                L        G L+  + ++++  N  Q   ++   FS     L +L+ LD++ N 
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAH-NLIQS-FKLPEYFSN----LTNLEHLDLSSNK 160

Query: 111 LSGAIPACI-SNSSARKEVGYTSILNLLRITDRSKNNFSGV--------------LPAEL 155
           +  +I             +  +  L+L  +       F  +              +P  +
Sbjct: 161 IQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGI 219

Query: 156 VTDLVALRSLNLFHN 170
              L +L+ + L  N
Sbjct: 220 FDRLTSLQKIWLHTN 234

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 7e-04
 Identities = 26/172 (15%), Positives = 52/172 (30%), Gaps = 41/172 (23%)

Query: 10  SSLRYLDLSDNQFNSTIPE---WISRINC-TISSGLGNLTSLKHSISYNVLEGKLPTSFG 65
           + +        +    +     W++  NC +  + L  L  L + I  N           
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS-------- 215

Query: 66  RLREPRSISLSWANKSQEILEIF--HSFSR-----DN-WTLRSLQILDIACNNLSGAIPA 117
           R     +I L   +   E+  +     +        N    ++    +++C  L      
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL----- 270

Query: 118 CISNSSARKEVGYTSILNLLRITDRSKNNFSGVL-PAELVTDLVALRSLNLF 168
               ++  K+V  T  L+    T  S ++ S  L P E           +L 
Sbjct: 271 ----TTRFKQV--TDFLSAATTTHISLDHHSMTLTPDE---------VKSLL 307

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 38.3 bits (89), Expect = 8e-04
 Identities = 26/184 (14%), Positives = 43/184 (23%), Gaps = 40/184 (21%)

Query: 8   NLSSLRYLDLSDNQFNSTIPE------------------WISRINCTISSGLGNLTSLKH 49
               L  +++S N     I                     +  IN      L NL  L  
Sbjct: 52  GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL-- 109

Query: 50  SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILE-IFHSFSRDNWTLRSLQILDIAC 108
            IS   ++           +   + +        I    F   S +        IL +  
Sbjct: 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE------SVILWLNK 163

Query: 109 NNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLF 168
           N +   I     N              L  +     NN    LP ++         L++ 
Sbjct: 164 NGIQ-EIHNSAFNG-----------TQLDELNLSDNNNLE-ELPNDVFHGASGPVILDIS 210

Query: 169 HNHF 172
               
Sbjct: 211 RTRI 214

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	181
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.91
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.84
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.83
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.83
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.83
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.82
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.82
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.82
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.82
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.82
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.81
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.8
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.8
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.79
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.79
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.79
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.79
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.79
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.79
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.79
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.78
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.78
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.78
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.78
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.78
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.78
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.77
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.77
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.77
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.77
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.77
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.77
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.77
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.77
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.77
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.77
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.76
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.76
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.76
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.76
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.75
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.75
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.75
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.74
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.74
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.74
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.74
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.74
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.74
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.74
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.73
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.71
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.71
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.71
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.71
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.71
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.7
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.7
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.7
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.7
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.7
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.69
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.69
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.69
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.68
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.67
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.67
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.66
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.65
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.64
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.64
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.63
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.63
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.63
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.62
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.62
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.62
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.62
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.61
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.61
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.61
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.6
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.6
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.6
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.59
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.59
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.59
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.58
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.54
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.52
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.52
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.52
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.52
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.52
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.51
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.51
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.5
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.48
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.48
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.48
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.45
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.42
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.38
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.34
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.2
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.1
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.05
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.02
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.99
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.99
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.84
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.77
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.74
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.66
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.65
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.6
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.59
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.37
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.27
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.21
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.19
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.79
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.51
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.38
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.25
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.18
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.16
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.92
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.87
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.62
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.5
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.91  E-value=2.7e-24  Score=180.51  Aligned_cols=177  Identities=25%  Similarity=0.284  Sum_probs=129.9

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccc-------------cccccCCcccccccchh-ccccccccCCCCcccCCC
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRL   67 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l   67 (181)
                      +|..+..+++|+.|++++|.+.+.+|..+..             +.+.+|..++.+++|+. ++++|.+.+.+|..++.+
T Consensus       458 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l  537 (768)
T 3rgz_A          458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC  537 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC
T ss_pred             CCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence            3445555566666666666666555555543             34456666777777777 777777777777777777


Q ss_pred             CCCcEEEcCCCcccccchhHhhhc--------------------------------------------------------
Q 039018           68 REPRSISLSWANKSQEILEIFHSF--------------------------------------------------------   91 (181)
Q Consensus        68 ~~L~~L~l~~n~~~~~~~~~~~~~--------------------------------------------------------   91 (181)
                      ++|++|++++|.+.+.+|..+...                                                        
T Consensus       538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~  617 (768)
T 3rgz_A          538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS  617 (768)
T ss_dssp             TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred             CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence            777777777777766666543211                                                        


Q ss_pred             -------cCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcccEEEccCCccccCCC
Q 039018           92 -------SRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFSGVLP  152 (181)
Q Consensus        92 -------~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~~~~p  152 (181)
                             +..+..+..|+.|++++|+++|.+|.+++.++.|++ .+.+|           .+++|++|++++|+++|.+|
T Consensus       618 ~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip  697 (768)
T 3rgz_A          618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP  697 (768)
T ss_dssp             CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred             ceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence                   112344677889999999999999999999999888 66666           67789999999999999999


Q ss_pred             hhHHHhcccCCEeEecCCcccccCCCC
Q 039018          153 AELVTDLVALRSLNLFHNHFKEKFPGS  179 (181)
Q Consensus       153 ~~~~~~l~~L~~L~L~~n~l~~~~p~~  179 (181)
                      ..+ +.++.|++|++++|+++|.+|..
T Consensus       698 ~~l-~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          698 QAM-SALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             GGG-GGCCCCSEEECCSSEEEEECCSS
T ss_pred             hHH-hCCCCCCEEECcCCcccccCCCc
Confidence            888 99999999999999999999864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=1.5e-24  Score=164.70  Aligned_cols=170  Identities=26%  Similarity=0.365  Sum_probs=118.9

Q ss_pred             CCCCCCCCcCCCeeeccC-cccccccCccccc-------------cccccCCcccccccchh-ccccccccCCCCcccCC
Q 039018            2 IPNGPENLSSLRYLDLSD-NQFNSTIPEWISR-------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGR   66 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~-n~i~~~~p~~~~~-------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~   66 (181)
                      +|..+.++++|+.|++++ |.+.+.+|+.+..             +.+.+|..+.++++|++ ++++|.+.+..|..+..
T Consensus        68 ~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  147 (313)
T 1ogq_A           68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS  147 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred             cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhc
Confidence            566677777777777774 7777667766654             34456667777777777 77777777777777777


Q ss_pred             CCCCcEEEcCCCcccccchhHhhhccCCCCCCC-CccEEEcccccce-----------------------eecCchhhcc
Q 039018           67 LREPRSISLSWANKSQEILEIFHSFSRDNWTLR-SLQILDIACNNLS-----------------------GAIPACISNS  122 (181)
Q Consensus        67 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~i~-----------------------~~~p~~~~~~  122 (181)
                      +++|++|++++|.+.+..|..+       ..+. .|+.|++++|+++                       +..|..+..+
T Consensus       148 l~~L~~L~L~~N~l~~~~p~~l-------~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l  220 (313)
T 1ogq_A          148 LPNLVGITFDGNRISGAIPDSY-------GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD  220 (313)
T ss_dssp             CTTCCEEECCSSCCEEECCGGG-------GCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTT
T ss_pred             CCCCCeEECcCCcccCcCCHHH-------hhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcC
Confidence            7777777777777776666666       4444 4555555555444                       4444455555


Q ss_pred             ccccc-ccccc----------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCC
Q 039018          123 SARKE-VGYTS----------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGS  179 (181)
Q Consensus       123 ~~l~~-~~~~n----------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~  179 (181)
                      ++|++ .+.+|          .+++|++|++++|++++.+|..+ ..+++|+.|++++|.++|.+|..
T Consensus       221 ~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          221 KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL-TQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             SCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGG-GGCTTCCEEECCSSEEEEECCCS
T ss_pred             CCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHH-hcCcCCCEEECcCCcccccCCCC
Confidence            55555 33333          45678888999998888888887 88999999999999999888864

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.90  E-value=1e-23  Score=177.09  Aligned_cols=117  Identities=30%  Similarity=0.393  Sum_probs=56.8

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccc-------------cccccCCcccccccchh-ccccccccCCCCcccCCC
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRL   67 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l   67 (181)
                      +|..+.++++|+.|++++|.+.+.+|+.+..             +.+.+|..+..+++|+. ++++|.+.+..|..+..+
T Consensus       410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l  489 (768)
T 3rgz_A          410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC  489 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred             cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcC
Confidence            3445555566666666666665555554443             22344444445555555 555555554455555555


Q ss_pred             CCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccc
Q 039018           68 REPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSAR  125 (181)
Q Consensus        68 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l  125 (181)
                      ++|++|++++|.+.+..|..+       +.+++|+.|++++|++++.+|..++.+++|
T Consensus       490 ~~L~~L~L~~N~l~~~~p~~~-------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  540 (768)
T 3rgz_A          490 TNLNWISLSNNRLTGEIPKWI-------GRLENLAILKLSNNSFSGNIPAELGDCRSL  540 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGG-------GGCTTCCEEECCSSCCEEECCGGGGGCTTC
T ss_pred             CCCCEEEccCCccCCcCChHH-------hcCCCCCEEECCCCcccCcCCHHHcCCCCC
Confidence            555555555555544444444       333444444444444433333333333333

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=9.5e-24  Score=161.30  Aligned_cols=170  Identities=19%  Similarity=0.219  Sum_probs=132.9

Q ss_pred             CCCCCCCCCcCCCeeeccCcccccccCccccc------------cccccCCcccccccchh-ccccccccCCCCcccCC-
Q 039018            1 PIPNGPENLSSLRYLDLSDNQFNSTIPEWISR------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGR-   66 (181)
Q Consensus         1 ~lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~-   66 (181)
                      ++|..++++++|++|++++|.+. .+|+.+..            ....+|..++++++|+. ++++|.+.+.+|..+.. 
T Consensus        95 ~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~  173 (328)
T 4fcg_A           95 QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLAST  173 (328)
T ss_dssp             SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE
T ss_pred             hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhc
Confidence            36778888888888888888888 67765544            11256667777777777 77777777677766554 


Q ss_pred             --------CCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----
Q 039018           67 --------LREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----  132 (181)
Q Consensus        67 --------l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----  132 (181)
                              +++|++|++++|.+. .+|..+       ..+++|+.|++++|.++ .+|..+..+++|++ .+.+|     
T Consensus       174 ~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l-------~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~  244 (328)
T 4fcg_A          174 DASGEHQGLVNLQSLRLEWTGIR-SLPASI-------ANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRN  244 (328)
T ss_dssp             C-CCCEEESTTCCEEEEEEECCC-CCCGGG-------GGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCB
T ss_pred             cchhhhccCCCCCEEECcCCCcC-cchHhh-------cCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhh
Confidence                    777888888777776 566666       78888888888888888 57777888888888 55554     


Q ss_pred             ------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCCCC
Q 039018          133 ------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSIH  181 (181)
Q Consensus       133 ------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i~  181 (181)
                            .+++|++|++++|.+.+.+|..+ ..+++|+.|+|++|.+.+.+|++++
T Consensus       245 ~p~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~l~~L~~L~L~~n~~~~~iP~~l~  298 (328)
T 4fcg_A          245 YPPIFGGRAPLKRLILKDCSNLLTLPLDI-HRLTQLEKLDLRGCVNLSRLPSLIA  298 (328)
T ss_dssp             CCCCTTCCCCCCEEECTTCTTCCBCCTTG-GGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred             hHHHhcCCCCCCEEECCCCCchhhcchhh-hcCCCCCEEeCCCCCchhhccHHHh
Confidence                  57789999999998888899887 9999999999999999999998763

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.90  E-value=9.1e-24  Score=160.37  Aligned_cols=158  Identities=21%  Similarity=0.258  Sum_probs=127.2

Q ss_pred             cCCCeeeccCccccc--ccCccccc--------------cccccCCcccccccchh-ccccccccCCCCcccCCCCCCcE
Q 039018           10 SSLRYLDLSDNQFNS--TIPEWISR--------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRS   72 (181)
Q Consensus        10 ~~L~~L~ls~n~i~~--~~p~~~~~--------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~   72 (181)
                      .+++.|++++|.+.+  .+|+.+..              +.+.+|..++++++|+. ++++|.+.+..|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            578999999999998  78887765              33478889999999999 99999999899999999999999


Q ss_pred             EEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccc-cccc-ccccc-----------cCCcccE
Q 039018           73 ISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSS-ARKE-VGYTS-----------ILNLLRI  139 (181)
Q Consensus        73 L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~-~l~~-~~~~n-----------~l~~L~~  139 (181)
                      |++++|.+.+..|..+       ..+++|+.|++++|++++.+|..++.+. .|++ .+.+|           .+. |++
T Consensus       130 L~Ls~N~l~~~~p~~~-------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~  201 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSI-------SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAF  201 (313)
T ss_dssp             EECCSSEEESCCCGGG-------GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSE
T ss_pred             EeCCCCccCCcCChHH-------hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccE
Confidence            9999999998899999       8999999999999999999999999888 8887 55555           222 666


Q ss_pred             EEccCCccccCCChhHHHhcccCCEeEecCCcccccC
Q 039018          140 TDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKF  176 (181)
Q Consensus       140 l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~  176 (181)
                      |++++|.+++..|..+ ..+++|+.|++++|.+++.+
T Consensus       202 L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~  237 (313)
T 1ogq_A          202 VDLSRNMLEGDASVLF-GSDKNTQKIHLAKNSLAFDL  237 (313)
T ss_dssp             EECCSSEEEECCGGGC-CTTSCCSEEECCSSEECCBG
T ss_pred             EECcCCcccCcCCHHH-hcCCCCCEEECCCCceeeec
Confidence            6676666665555444 55555555555555555433

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.84  E-value=1.2e-20  Score=144.09  Aligned_cols=162  Identities=18%  Similarity=0.208  Sum_probs=137.2

Q ss_pred             CCCCCCCCCcCCCeeeccCcccccccCccccc-------------cccccCCcccc---------cccchh-cccccccc
Q 039018            1 PIPNGPENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTISSGLGN---------LTSLKH-SISYNVLE   57 (181)
Q Consensus         1 ~lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~~l~~~l~~---------l~~L~~-~l~~n~~~   57 (181)
                      ++|..+.++++|++|++++|.+. .+|+.+..             ..+.+|..+..         +++|++ ++++|.+.
T Consensus       118 ~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  196 (328)
T 4fcg_A          118 ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR  196 (328)
T ss_dssp             CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC
T ss_pred             chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC
Confidence            36888888899999999999888 77877665             34456666554         889999 99999998


Q ss_pred             CCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc----
Q 039018           58 GKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS----  132 (181)
Q Consensus        58 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n----  132 (181)
                       .+|..++.+++|++|++++|.+.+ +|..+       ..+++|+.|++++|.+.+.+|..++.+++|++ .+.+|    
T Consensus       197 -~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l-------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~  267 (328)
T 4fcg_A          197 -SLPASIANLQNLKSLKIRNSPLSA-LGPAI-------HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL  267 (328)
T ss_dssp             -CCCGGGGGCTTCCEEEEESSCCCC-CCGGG-------GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred             -cchHhhcCCCCCCEEEccCCCCCc-Cchhh-------ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence             888889999999999999999884 55667       78899999999999888888988999999988 55554    


Q ss_pred             -------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCccc
Q 039018          133 -------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK  173 (181)
Q Consensus       133 -------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~  173 (181)
                             .+++|++|++++|.+.+.+|+.+ +.+++|+.+++..+.+.
T Consensus       268 ~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l-~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLI-AQLPANCIILVPPHLQA  314 (328)
T ss_dssp             BCCTTGGGCTTCCEEECTTCTTCCCCCGGG-GGSCTTCEEECCGGGSC
T ss_pred             hcchhhhcCCCCCEEeCCCCCchhhccHHH-hhccCceEEeCCHHHHH
Confidence                   67889999999999999999998 99999999999987765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.83  E-value=6.3e-20  Score=136.54  Aligned_cols=153  Identities=22%  Similarity=0.251  Sum_probs=109.8

Q ss_pred             CCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccc
Q 039018            4 NGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQ   82 (181)
Q Consensus         4 ~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~   82 (181)
                      +.+..+++|+.|++++|.+.+ ++            .+..+++|++ ++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus        57 ~~l~~l~~L~~L~l~~n~l~~-~~------------~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  123 (272)
T 3rfs_A           57 QGIQYLPNVRYLALGGNKLHD-IS------------ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS  123 (272)
T ss_dssp             TTGGGCTTCCEEECTTSCCCC-CG------------GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC
T ss_pred             cccccCCCCcEEECCCCCCCC-ch------------hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCc
Confidence            346777888888888888873 22            3566777777 777777775555556777788888888777776


Q ss_pred             cchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcccEEEccCCccccC
Q 039018           83 EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFSGV  150 (181)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~~~  150 (181)
                      ..+..+       ..+++|+.|++++|.+++..+..+..+++|++ .+.+|           .+++|++|++++|.+++.
T Consensus       124 ~~~~~~-------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (272)
T 3rfs_A          124 LPDGVF-------DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV  196 (272)
T ss_dssp             CCTTTT-------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             cCHHHh-------ccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence            555556       67777777777777777444455667777666 44444           456788999999998855


Q ss_pred             CChhHHHhcccCCEeEecCCcccccCC
Q 039018          151 LPAELVTDLVALRSLNLFHNHFKEKFP  177 (181)
Q Consensus       151 ~p~~~~~~l~~L~~L~L~~n~l~~~~p  177 (181)
                      .+..+ ..+++|+.|++++|.+.+..|
T Consensus       197 ~~~~~-~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          197 PDGVF-DRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             CTTTT-TTCTTCCEEECCSSCBCCCTT
T ss_pred             CHHHH-hCCcCCCEEEccCCCccccCc
Confidence            44444 888899999998888876655

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=9.4e-20  Score=134.06  Aligned_cols=153  Identities=24%  Similarity=0.281  Sum_probs=99.8

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK   80 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (181)
                      +|..+.  +.++.|++++|.+.+..+           ..+.++++|++ ++++|.+.+..+..+..+++|++|++++|.+
T Consensus        29 ~p~~~~--~~l~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   95 (251)
T 3m19_A           29 VPSGIP--ADTEKLDLQSTGLATLSD-----------ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL   95 (251)
T ss_dssp             CCSCCC--TTCCEEECTTSCCCCCCT-----------TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             cCCCCC--CCCCEEEccCCCcCccCH-----------hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc
Confidence            455443  467777777777764333           33556667777 7777777765555666777777777777776


Q ss_pred             cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcccEEEccCCccc
Q 039018           81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFS  148 (181)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~  148 (181)
                      .+..+..+       ..+++|+.|++++|++++..+..+..+++|++ .+.+|           .+++|++|++++|+++
T Consensus        96 ~~~~~~~~-------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A           96 ASLPLGVF-------DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             CCCCTTTT-------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             cccChhHh-------cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence            65555555       66677777777777776333344566666555 33333           3566888888888888


Q ss_pred             cCCChhHHHhcccCCEeEecCCccccc
Q 039018          149 GVLPAELVTDLVALRSLNLFHNHFKEK  175 (181)
Q Consensus       149 ~~~p~~~~~~l~~L~~L~L~~n~l~~~  175 (181)
                      +..+..+ ..+++|+.|++++|.+++.
T Consensus       169 ~~~~~~~-~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          169 SVPHGAF-DRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCCTTTT-TTCTTCCEEECCSCCBCTT
T ss_pred             ccCHHHH-hCCCCCCEEEeeCCceeCC
Confidence            4434344 7888888888888888765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.83  E-value=6e-21  Score=157.30  Aligned_cols=172  Identities=20%  Similarity=0.239  Sum_probs=100.3

Q ss_pred             CCCCCCCCcCCCeeeccCcccccc-cC-----ccccccccccCCccc--ccccchh-ccccccccCCCCcccCCCCCCcE
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNST-IP-----EWISRINCTISSGLG--NLTSLKH-SISYNVLEGKLPTSFGRLREPRS   72 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~-~p-----~~~~~~~~~l~~~l~--~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~   72 (181)
                      ||..++++++|++|++++|.+.+. ++     .......+.+|..++  ++++|+. ++++|.+.+.+|..++++++|++
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL  277 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence            688899999999999999999963 11     100001111566777  8888888 88888888888888888888999


Q ss_pred             EEcCCCc-ccc-cchhHhhhccCCCCCCCCccEEEcccccceeecCc--hhhccccccc-ccccc----------cCCcc
Q 039018           73 ISLSWAN-KSQ-EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPA--CISNSSARKE-VGYTS----------ILNLL  137 (181)
Q Consensus        73 L~l~~n~-~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~--~~~~~~~l~~-~~~~n----------~l~~L  137 (181)
                      |++++|. +.+ .+|..+..+. ....+++|+.|++++|.++ .+|.  .++.+++|++ .+.+|          .+++|
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~L~-~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L  355 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQALA-DAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKL  355 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHH-HSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEE
T ss_pred             EECcCCCCCccccchHHHHhhh-ccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCC
Confidence            9988887 777 6777663210 0001144444555444444 4444  4444444444 22222          12234


Q ss_pred             cEEEccCCccccCCChhHHHhccc-CCEeEecCCcccccCCC
Q 039018          138 RITDRSKNNFSGVLPAELVTDLVA-LRSLNLFHNHFKEKFPG  178 (181)
Q Consensus       138 ~~l~l~~n~~~~~~p~~~~~~l~~-L~~L~L~~n~l~~~~p~  178 (181)
                      ++|++++|.++ .+|..+ ..+++ |+.|++++|.++ .+|.
T Consensus       356 ~~L~L~~N~l~-~lp~~l-~~l~~~L~~L~Ls~N~l~-~lp~  394 (636)
T 4eco_A          356 ASLNLAYNQIT-EIPANF-CGFTEQVENLSFAHNKLK-YIPN  394 (636)
T ss_dssp             SEEECCSSEEE-ECCTTS-EEECTTCCEEECCSSCCS-SCCS
T ss_pred             CEEECCCCccc-cccHhh-hhhcccCcEEEccCCcCc-ccch
Confidence            44444444444 444443 44444 444444444444 3443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.83  E-value=1e-19  Score=136.06  Aligned_cols=162  Identities=19%  Similarity=0.098  Sum_probs=85.7

Q ss_pred             CCCCCcCCCeeeccCcccccccCccccc-------------ccccc-CCcccccccchh-ccccccccCCCCcccCCCCC
Q 039018            5 GPENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTI-SSGLGNLTSLKH-SISYNVLEGKLPTSFGRLRE   69 (181)
Q Consensus         5 ~~~~l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~~l-~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~   69 (181)
                      .+.++++|+.|++++|.+++..|..+..             ....+ +..+..+++|+. ++++|.+.+..+..+..+++
T Consensus        51 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  130 (285)
T 1ozn_A           51 SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA  130 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcC
Confidence            4556666666666666665433433322             01111 334444555555 55555555444444555555


Q ss_pred             CcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcc
Q 039018           70 PRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLL  137 (181)
Q Consensus        70 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L  137 (181)
                      |++|++++|.+.+..+..+       ..+++|+.|++++|++++..+..+..+++|++ .+.+|           .+++|
T Consensus       131 L~~L~l~~n~l~~~~~~~~-------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  203 (285)
T 1ozn_A          131 LQYLYLQDNALQALPDDTF-------RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL  203 (285)
T ss_dssp             CCEEECCSSCCCCCCTTTT-------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             CCEEECCCCcccccCHhHh-------ccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccc
Confidence            5555555555544333334       55666666666666665333344555666555 33333           34556


Q ss_pred             cEEEccCCccccCCChhHHHhcccCCEeEecCCcccc
Q 039018          138 RITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE  174 (181)
Q Consensus       138 ~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~  174 (181)
                      +.|++++|.+++ ++...+..+++|+.|++++|.+..
T Consensus       204 ~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          204 MTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCccC
Confidence            666666666663 343323666666666666666653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.82  E-value=2.8e-20  Score=157.48  Aligned_cols=175  Identities=18%  Similarity=0.203  Sum_probs=139.9

Q ss_pred             CCCCCCCCcCCCeeeccCcccccc-cCccc-----cccccccCCccc--ccccchh-ccccccccCCCCcccCCCCCCcE
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNST-IPEWI-----SRINCTISSGLG--NLTSLKH-SISYNVLEGKLPTSFGRLREPRS   72 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~-~p~~~-----~~~~~~l~~~l~--~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~   72 (181)
                      ||..++++++|+.|++++|.+.+. +|...     ....+.+|..++  ++++|+. ++++|.+.+.+|..++.+++|+.
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            788999999999999999999962 21111     001123667777  9999999 99999999899999999999999


Q ss_pred             EEcCCCc-ccc-cchhHhhhccCCCCCCCCccEEEcccccceeecCc--hhhccccccc-ccccc---------cCCccc
Q 039018           73 ISLSWAN-KSQ-EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPA--CISNSSARKE-VGYTS---------ILNLLR  138 (181)
Q Consensus        73 L~l~~n~-~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~--~~~~~~~l~~-~~~~n---------~l~~L~  138 (181)
                      |++++|. +.+ .+|..+..+......+++|+.|++++|.++ .+|.  .++.+++|++ .+.+|         .+++|+
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~  598 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLT  598 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEES
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcce
Confidence            9999998 887 788887544433455669999999999998 8888  8889888888 55555         456788


Q ss_pred             EEEccCCccccCCChhHHHhccc-CCEeEecCCcccccCCCCC
Q 039018          139 ITDRSKNNFSGVLPAELVTDLVA-LRSLNLFHNHFKEKFPGSI  180 (181)
Q Consensus       139 ~l~l~~n~~~~~~p~~~~~~l~~-L~~L~L~~n~l~~~~p~~i  180 (181)
                      .|++++|.++ .+|..+ ..+++ |+.|+|++|.++ .+|..+
T Consensus       599 ~L~Ls~N~l~-~lp~~l-~~l~~~L~~L~Ls~N~L~-~lp~~~  638 (876)
T 4ecn_A          599 DLKLDYNQIE-EIPEDF-CAFTDQVEGLGFSHNKLK-YIPNIF  638 (876)
T ss_dssp             EEECCSSCCS-CCCTTS-CEECTTCCEEECCSSCCC-SCCSCC
T ss_pred             EEECcCCccc-cchHHH-hhccccCCEEECcCCCCC-cCchhh
Confidence            8899998888 788777 88888 888888888888 788765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.82  E-value=1.1e-20  Score=155.72  Aligned_cols=133  Identities=18%  Similarity=0.278  Sum_probs=97.6

Q ss_pred             cCCcccccccchh-ccccccccCC-----------------CCcccC--CCCCCcEEEcCCCcccccchhHhhhccCCCC
Q 039018           37 ISSGLGNLTSLKH-SISYNVLEGK-----------------LPTSFG--RLREPRSISLSWANKSQEILEIFHSFSRDNW   96 (181)
Q Consensus        37 l~~~l~~l~~L~~-~l~~n~~~~~-----------------~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~   96 (181)
                      +|..++++++|++ ++++|.+++.                 +|+.++  .+++|++|++++|.+.+.+|..+       +
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-------~  270 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-------K  270 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-------T
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-------h
Confidence            8889999999999 9999999975                 899999  99999999999999998999888       9


Q ss_pred             CCCCccEEEccccc-cee-ecCchhhcc------ccccc-ccccc------------cCCcccEEEccCCccccCCChhH
Q 039018           97 TLRSLQILDIACNN-LSG-AIPACISNS------SARKE-VGYTS------------ILNLLRITDRSKNNFSGVLPAEL  155 (181)
Q Consensus        97 ~~~~L~~L~l~~n~-i~~-~~p~~~~~~------~~l~~-~~~~n------------~l~~L~~l~l~~n~~~~~~p~~~  155 (181)
                      ++++|+.|++++|+ +++ .+|..++.+      ++|++ .+.+|            .+++|++|++++|.++|.+| .+
T Consensus       271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~  349 (636)
T 4eco_A          271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AF  349 (636)
T ss_dssp             TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CC
T ss_pred             cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hh
Confidence            99999999999998 988 889888775      55444 22222            23344555555555554444 33


Q ss_pred             HHhcccCCEeEecCCcccccCCCC
Q 039018          156 VTDLVALRSLNLFHNHFKEKFPGS  179 (181)
Q Consensus       156 ~~~l~~L~~L~L~~n~l~~~~p~~  179 (181)
                       +.+++|+.|++++|.++ .+|.+
T Consensus       350 -~~l~~L~~L~L~~N~l~-~lp~~  371 (636)
T 4eco_A          350 -GSEIKLASLNLAYNQIT-EIPAN  371 (636)
T ss_dssp             -EEEEEESEEECCSSEEE-ECCTT
T ss_pred             -CCCCCCCEEECCCCccc-cccHh
Confidence             44555555555555554 44443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.82  E-value=7.9e-20  Score=136.67  Aligned_cols=163  Identities=20%  Similarity=0.189  Sum_probs=103.7

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccc-------------cccccCCcccccccchh-cccccc-ccCCCCcccCC
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTISSGLGNLTSLKH-SISYNV-LEGKLPTSFGR   66 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~~l~~~l~~l~~L~~-~l~~n~-~~~~~~~~~~~   66 (181)
                      +|..+  .++|+.|++++|.+++..++.+..             +....+..+.++++|+. ++++|. +....+..+..
T Consensus        26 ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~  103 (285)
T 1ozn_A           26 VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG  103 (285)
T ss_dssp             CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred             CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcC
Confidence            45544  468999999999998544444432             22223455566666666 666665 55334555666


Q ss_pred             CCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cC
Q 039018           67 LREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------IL  134 (181)
Q Consensus        67 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l  134 (181)
                      +++|++|++++|.+.+..+..+       ..+++|+.|++++|++++..+..+..+++|++ .+.+|           .+
T Consensus       104 l~~L~~L~l~~n~l~~~~~~~~-------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  176 (285)
T 1ozn_A          104 LGRLHTLHLDRCGLQELGPGLF-------RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL  176 (285)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTT-------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CcCCCEEECCCCcCCEECHhHh-------hCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCc
Confidence            6666666666666665555555       66777777777777776444445666777666 44444           45


Q ss_pred             CcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccc
Q 039018          135 NLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE  174 (181)
Q Consensus       135 ~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~  174 (181)
                      ++|++|++++|.+++..|..+ ..+++|+.|++++|.+++
T Consensus       177 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~  215 (285)
T 1ozn_A          177 HSLDRLLLHQNRVAHVHPHAF-RDLGRLMTLYLFANNLSA  215 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCSC
T ss_pred             cccCEEECCCCcccccCHhHc-cCcccccEeeCCCCcCCc
Confidence            567777777777775556555 677777777777777764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=1.2e-19  Score=131.17  Aligned_cols=142  Identities=21%  Similarity=0.241  Sum_probs=115.8

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK   80 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (181)
                      ||..+.  ..++.|++++|.+++..|.          ..+..+++|+. ++++|.+++..+..+..+++|++|++++|.+
T Consensus        26 iP~~~~--~~~~~L~L~~N~l~~~~~~----------~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l   93 (220)
T 2v70_A           26 IPEHIP--QYTAELRLNNNEFTVLEAT----------GIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL   93 (220)
T ss_dssp             CCSCCC--TTCSEEECCSSCCCEECCC----------CCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CccCCC--CCCCEEEcCCCcCCccCch----------hhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence            455443  3567888888888743332          34678889999 9999999977777899999999999999999


Q ss_pred             cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcc
Q 039018           81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLV  160 (181)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~  160 (181)
                      .+..+..+       ..+++|++|++++|++++..|..+..+            ++|++|++++|++++..|..+ ..++
T Consensus        94 ~~~~~~~~-------~~l~~L~~L~Ls~N~l~~~~~~~~~~l------------~~L~~L~L~~N~l~~~~~~~~-~~l~  153 (220)
T 2v70_A           94 ENVQHKMF-------KGLESLKTLMLRSNRITCVGNDSFIGL------------SSVRLLSLYDNQITTVAPGAF-DTLH  153 (220)
T ss_dssp             CCCCGGGG-------TTCSSCCEEECTTSCCCCBCTTSSTTC------------TTCSEEECTTSCCCCBCTTTT-TTCT
T ss_pred             CccCHhHh-------cCCcCCCEEECCCCcCCeECHhHcCCC------------ccCCEEECCCCcCCEECHHHh-cCCC
Confidence            87777778       889999999999999987777778774            459999999999996667777 9999


Q ss_pred             cCCEeEecCCccccc
Q 039018          161 ALRSLNLFHNHFKEK  175 (181)
Q Consensus       161 ~L~~L~L~~n~l~~~  175 (181)
                      +|+.|++++|.+.+.
T Consensus       154 ~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          154 SLSTLNLLANPFNCN  168 (220)
T ss_dssp             TCCEEECCSCCEECS
T ss_pred             CCCEEEecCcCCcCC
Confidence            999999999998754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.82  E-value=3.5e-20  Score=139.85  Aligned_cols=171  Identities=23%  Similarity=0.223  Sum_probs=112.0

Q ss_pred             CCCC-CCCCcCCCeeeccCcccccc--cCccccc------------cccccCCcccccccchh-ccccccccCCCC-ccc
Q 039018            2 IPNG-PENLSSLRYLDLSDNQFNST--IPEWISR------------INCTISSGLGNLTSLKH-SISYNVLEGKLP-TSF   64 (181)
Q Consensus         2 lp~~-~~~l~~L~~L~ls~n~i~~~--~p~~~~~------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~-~~~   64 (181)
                      +|.. +.++++|+.|++++|.+...  .|..+..            ....+|..+..+++|+. ++++|.+.+..+ ..+
T Consensus        43 i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  122 (306)
T 2z66_A           43 LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF  122 (306)
T ss_dssp             CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTT
T ss_pred             cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhh
Confidence            4544 57888888888888887622  1222221            11235555667777777 777777774433 457


Q ss_pred             CCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEccccccee-ecCchhhccccccc-ccccc----------
Q 039018           65 GRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSG-AIPACISNSSARKE-VGYTS----------  132 (181)
Q Consensus        65 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~-~~p~~~~~~~~l~~-~~~~n----------  132 (181)
                      ..+++|++|++++|.+.+..+..+       ..+++|+.|++++|.+++ ..|..+..+++|++ .+.+|          
T Consensus       123 ~~l~~L~~L~l~~n~l~~~~~~~~-------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  195 (306)
T 2z66_A          123 LSLRNLIYLDISHTHTRVAFNGIF-------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF  195 (306)
T ss_dssp             TTCTTCCEEECTTSCCEECSTTTT-------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             hhccCCCEEECCCCcCCccchhhc-------ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHh
Confidence            777788888888777766666666       666777777777777664 45666666666666 44444          


Q ss_pred             -cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCCC
Q 039018          133 -ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI  180 (181)
Q Consensus       133 -~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i  180 (181)
                       .+++|++|++++|.+++..+..+ ..+++|+.|++++|.+++..|..+
T Consensus       196 ~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~  243 (306)
T 2z66_A          196 NSLSSLQVLNMSHNNFFSLDTFPY-KCLNSLQVLDYSLNHIMTSKKQEL  243 (306)
T ss_dssp             TTCTTCCEEECTTSCCSBCCSGGG-TTCTTCCEEECTTSCCCBCSSSSC
T ss_pred             cCCCCCCEEECCCCccCccChhhc-cCcccCCEeECCCCCCcccCHHHH
Confidence             45667778888777774433344 777777888888877776666544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.82  E-value=4.1e-19  Score=131.98  Aligned_cols=124  Identities=20%  Similarity=0.234  Sum_probs=63.1

Q ss_pred             cccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhh
Q 039018           42 GNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACIS  120 (181)
Q Consensus        42 ~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~  120 (181)
                      .++++|++ ++++|.+....+..+..+++|++|++++|.+.+..+..+       ..+++|+.|++++|.+++..+..+.
T Consensus        82 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------~~l~~L~~L~Ls~n~l~~~~~~~~~  154 (270)
T 2o6q_A           82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF-------DSLTKLTYLSLGYNELQSLPKGVFD  154 (270)
T ss_dssp             SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT-------TTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh-------CcCcCCCEEECCCCcCCccCHhHcc
Confidence            44555555 555555554333444555555555555555554444444       5566666666666666533333355


Q ss_pred             ccccccc-ccccc-----------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCccc
Q 039018          121 NSSARKE-VGYTS-----------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK  173 (181)
Q Consensus       121 ~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~  173 (181)
                      .+++|++ .+.+|           .+++|++|++++|.++ .+|...+..+++|+.|++++|.+.
T Consensus       155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCee
Confidence            5555554 33333           2344555555555555 233322245555555555555544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.82  E-value=1.9e-19  Score=142.45  Aligned_cols=77  Identities=19%  Similarity=0.146  Sum_probs=39.6

Q ss_pred             CCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcccEEEccCCccccCCChhHHHhcccCC
Q 039018           96 WTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFSGVLPAELVTDLVALR  163 (181)
Q Consensus        96 ~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~  163 (181)
                      ..+++|+.|++++|.+++..|..+..+++|++ .+.+|           .+++|++|++++|++++..|..+ ..+++|+
T Consensus       296 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~  374 (455)
T 3v47_A          296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF-LGLPNLK  374 (455)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTT-TTCTTCC
T ss_pred             ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhc-ccccccc
Confidence            34455555555555555444445555555555 33333           34455555555555554444444 5555555


Q ss_pred             EeEecCCccc
Q 039018          164 SLNLFHNHFK  173 (181)
Q Consensus       164 ~L~L~~n~l~  173 (181)
                      +|++++|.++
T Consensus       375 ~L~L~~N~l~  384 (455)
T 3v47_A          375 ELALDTNQLK  384 (455)
T ss_dssp             EEECCSSCCS
T ss_pred             EEECCCCccc
Confidence            5555555555

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.81  E-value=2.9e-19  Score=132.76  Aligned_cols=155  Identities=21%  Similarity=0.265  Sum_probs=127.5

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK   80 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (181)
                      +|..+.  +.++.|++++|.+.+ ++.          ..+.++++|+. ++++|.+....+..+..+++|++|++++|.+
T Consensus        31 ip~~~~--~~l~~L~l~~n~l~~-~~~----------~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l   97 (270)
T 2o6q_A           31 IPSNIP--ADTKKLDLQSNKLSS-LPS----------KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL   97 (270)
T ss_dssp             CCSCCC--TTCSEEECCSSCCSC-CCT----------TSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC
T ss_pred             cCCCCC--CCCCEEECcCCCCCe-eCH----------HHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC
Confidence            565553  679999999999983 332          45788999999 9999999955555568899999999999999


Q ss_pred             cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcccEEEccCCccc
Q 039018           81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFS  148 (181)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~  148 (181)
                      ....+..+       ..+.+|+.|++++|.+++..+..+..+++|++ .+.+|           .+++|+.|++++|.++
T Consensus        98 ~~~~~~~~-------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  170 (270)
T 2o6q_A           98 QALPIGVF-------DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK  170 (270)
T ss_dssp             CCCCTTTT-------TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CcCCHhHc-------ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence            87666677       88999999999999999666677899999999 56555           5788999999999999


Q ss_pred             cCCChhHHHhcccCCEeEecCCcccccCCC
Q 039018          149 GVLPAELVTDLVALRSLNLFHNHFKEKFPG  178 (181)
Q Consensus       149 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~  178 (181)
                      + ++...|..+++|+.|++++|.+++ +|.
T Consensus       171 ~-~~~~~~~~l~~L~~L~L~~N~l~~-~~~  198 (270)
T 2o6q_A          171 R-VPEGAFDKLTELKTLKLDNNQLKR-VPE  198 (270)
T ss_dssp             C-CCTTTTTTCTTCCEEECCSSCCSC-CCT
T ss_pred             E-eChhHhccCCCcCEEECCCCcCCc-CCH
Confidence            4 554433899999999999999994 544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.81  E-value=2.8e-19  Score=133.12  Aligned_cols=165  Identities=16%  Similarity=0.156  Sum_probs=111.4

Q ss_pred             CCCCCcCCCeeeccCcccccccCccccc-------------cccccCCcccccccchh-ccccccccCCCCcccCCCCCC
Q 039018            5 GPENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREP   70 (181)
Q Consensus         5 ~~~~l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L   70 (181)
                      .+.++++|+.|++++|.+.+..+..+..             +....+..+.++++|+. ++++|.+.+..+..+..+++|
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  126 (276)
T 2z62_A           47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL  126 (276)
T ss_dssp             TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred             HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence            5666677777777777766433333332             22223345666677777 777777765555456777777


Q ss_pred             cEEEcCCCccccc-chhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccc----c-ccccc----------cC
Q 039018           71 RSISLSWANKSQE-ILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARK----E-VGYTS----------IL  134 (181)
Q Consensus        71 ~~L~l~~n~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~----~-~~~~n----------~l  134 (181)
                      ++|++++|.+... +|..+       ..+++|+.|++++|++++..+..+..+..++    + .+.+|          ..
T Consensus       127 ~~L~l~~n~l~~~~l~~~~-------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~  199 (276)
T 2z62_A          127 KELNVAHNLIQSFKLPEYF-------SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE  199 (276)
T ss_dssp             CEEECCSSCCCCCCCCGGG-------GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS
T ss_pred             CEEECcCCccceecCchhh-------ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC
Confidence            7777777776642 46666       7778888888888888765556666666655    3 33333          23


Q ss_pred             CcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCC
Q 039018          135 NLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFP  177 (181)
Q Consensus       135 ~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p  177 (181)
                      .+|+.|++++|.++ .+|..++..+++|+.|++++|.+++..|
T Consensus       200 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          200 IRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             CcccEEECCCCcee-ecCHhHhcccccccEEEccCCcccccCC
Confidence            36899999999998 5565555889999999999999987665

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.81  E-value=1.9e-19  Score=130.09  Aligned_cols=140  Identities=21%  Similarity=0.292  Sum_probs=112.6

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK   80 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (181)
                      ||..+.  +.|+.|++++|.|.+ ++.          ..+..+++|+. ++++|.+.+..|..+..+++|++|++++|.+
T Consensus        26 iP~~l~--~~l~~L~l~~n~i~~-i~~----------~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           26 IPTNLP--ETITEIRLEQNTIKV-IPP----------GAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             CCSSCC--TTCCEEECCSSCCCE-ECT----------TSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred             CCCccC--cCCCEEECCCCcCCC-cCH----------hHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence            565553  678889999998883 332          35678888999 9999999877788899999999999999998


Q ss_pred             cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcc
Q 039018           81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLV  160 (181)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~  160 (181)
                      ....+..|       ..+.+|+.|++++|++++..|..+..+            ++|++|++++|.+++..+..+ ..++
T Consensus        93 ~~l~~~~f-------~~l~~L~~L~L~~N~l~~~~~~~~~~l------------~~L~~L~L~~N~l~~~~~~~~-~~l~  152 (220)
T 2v9t_B           93 TELPKSLF-------EGLFSLQLLLLNANKINCLRVDAFQDL------------HNLNLLSLYDNKLQTIAKGTF-SPLR  152 (220)
T ss_dssp             CCCCTTTT-------TTCTTCCEEECCSSCCCCCCTTTTTTC------------TTCCEEECCSSCCSCCCTTTT-TTCT
T ss_pred             CccCHhHc-------cCCCCCCEEECCCCCCCEeCHHHcCCC------------CCCCEEECCCCcCCEECHHHH-hCCC
Confidence            86555566       788999999999999987667777774            459999999999995444445 8899


Q ss_pred             cCCEeEecCCcccc
Q 039018          161 ALRSLNLFHNHFKE  174 (181)
Q Consensus       161 ~L~~L~L~~n~l~~  174 (181)
                      +|+.|+|++|.+..
T Consensus       153 ~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          153 AIQTMHLAQNPFIC  166 (220)
T ss_dssp             TCCEEECCSSCEEC
T ss_pred             CCCEEEeCCCCcCC
Confidence            99999999998864

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=4.3e-19  Score=129.00  Aligned_cols=141  Identities=23%  Similarity=0.295  Sum_probs=116.5

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK   80 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (181)
                      +|..+.  ++|+.|++++|.+.+..|           ..+..+++|+. ++++|.+....+..+..+++|++|++++|.+
T Consensus        34 ip~~~~--~~L~~L~Ls~n~i~~~~~-----------~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l  100 (229)
T 3e6j_A           34 VPAGIP--TNAQILYLHDNQITKLEP-----------GVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL  100 (229)
T ss_dssp             CCSCCC--TTCSEEECCSSCCCCCCT-----------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cCCCCC--CCCCEEEcCCCccCccCH-----------HHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence            566553  789999999999985334           45678899999 9999999855556678999999999999999


Q ss_pred             cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcc
Q 039018           81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLV  160 (181)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~  160 (181)
                      .+..+..+       ..+.+|+.|++++|+++ .+|..+..+            ++|++|++++|+++ .++...+..++
T Consensus       101 ~~l~~~~~-------~~l~~L~~L~Ls~N~l~-~lp~~~~~l------------~~L~~L~L~~N~l~-~~~~~~~~~l~  159 (229)
T 3e6j_A          101 TVLPSAVF-------DRLVHLKELFMCCNKLT-ELPRGIERL------------THLTHLALDQNQLK-SIPHGAFDRLS  159 (229)
T ss_dssp             CCCCTTTT-------TTCTTCCEEECCSSCCC-SCCTTGGGC------------TTCSEEECCSSCCC-CCCTTTTTTCT
T ss_pred             CccChhHh-------CcchhhCeEeccCCccc-ccCcccccC------------CCCCEEECCCCcCC-ccCHHHHhCCC
Confidence            87666667       88999999999999998 888888774            45999999999999 55544448999


Q ss_pred             cCCEeEecCCcccccC
Q 039018          161 ALRSLNLFHNHFKEKF  176 (181)
Q Consensus       161 ~L~~L~L~~n~l~~~~  176 (181)
                      +|+.|++++|.+.+..
T Consensus       160 ~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          160 SLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             TCCEEECTTSCBCTTB
T ss_pred             CCCEEEeeCCCccCCc
Confidence            9999999999988654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.80  E-value=9.7e-20  Score=137.42  Aligned_cols=129  Identities=24%  Similarity=0.221  Sum_probs=106.0

Q ss_pred             Ccccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccc-cchhHhhhccCCCCCCCCccEEEcccccceeecC
Q 039018           39 SGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQ-EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIP  116 (181)
Q Consensus        39 ~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p  116 (181)
                      ..+..+++|+. ++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+       ..+++|+.|++++|.+++..|
T Consensus       120 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-------~~l~~L~~L~Ls~n~l~~~~~  192 (306)
T 2z66_A          120 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF-------TELRNLTFLDLSQCQLEQLSP  192 (306)
T ss_dssp             TTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC-------TTCTTCCEEECTTSCCCEECT
T ss_pred             hhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH-------hhCcCCCEEECCCCCcCCcCH
Confidence            35777888888 888888887777778888899999998888765 456666       788888899998888887667


Q ss_pred             chhhccccccc-ccccc-----------cCCcccEEEccCCccccCCChhHHHhcc-cCCEeEecCCccccc
Q 039018          117 ACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFSGVLPAELVTDLV-ALRSLNLFHNHFKEK  175 (181)
Q Consensus       117 ~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~~~~p~~~~~~l~-~L~~L~L~~n~l~~~  175 (181)
                      ..+..+++|++ .+.+|           .+++|++|++++|.+++..|..+ ..++ +|+.|++++|.+++.
T Consensus       193 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL-QHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC-CCCCTTCCEEECTTCCEECS
T ss_pred             HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH-HhhhccCCEEEccCCCeecc
Confidence            88888888888 55555           46789999999999998777777 7774 899999999999864

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.80  E-value=3.5e-19  Score=133.84  Aligned_cols=154  Identities=22%  Similarity=0.207  Sum_probs=81.6

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK   80 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (181)
                      +|..+.  +.++.|++++|.+.+..+..           +..+++|+. ++++|.+++. +. .+.+++|++|++++|.+
T Consensus        25 ip~~~~--~~l~~L~L~~N~l~~~~~~~-----------~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~Ls~N~l   89 (290)
T 1p9a_G           25 LPPDLP--KDTTILHLSENLLYTFSLAT-----------LMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGTLDLSHNQL   89 (290)
T ss_dssp             CCSCCC--TTCCEEECTTSCCSEEEGGG-----------GTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCEEECCSSCC
T ss_pred             CCCCCC--CCCCEEEcCCCcCCccCHHH-----------hhcCCCCCEEECCCCccCcc-cC-CCCCCcCCEEECCCCcC
Confidence            555553  57788888888887444433           334444444 4444444421 11 13444444444444444


Q ss_pred             cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcccEEEccCCccc
Q 039018           81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFS  148 (181)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~  148 (181)
                      . .+|..+       ..+++|+.|++++|++++..|..+..+++|++ .+.+|           .+++|+.|++++|+++
T Consensus        90 ~-~l~~~~-------~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G           90 Q-SLPLLG-------QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             S-SCCCCT-------TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             C-cCchhh-------ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence            3 223333       34444444444444444222233444444444 22222           2455777888888777


Q ss_pred             cCCChhHHHhcccCCEeEecCCcccccCCCCC
Q 039018          149 GVLPAELVTDLVALRSLNLFHNHFKEKFPGSI  180 (181)
Q Consensus       149 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i  180 (181)
                       .+|..+|..+++|+.|+|++|.++ .+|..+
T Consensus       162 -~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~  191 (290)
T 1p9a_G          162 -ELPAGLLNGLENLDTLLLQENSLY-TIPKGF  191 (290)
T ss_dssp             -CCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred             -ccCHHHhcCcCCCCEEECCCCcCC-ccChhh
Confidence             555554477778888888888877 666654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.79  E-value=2.6e-20  Score=141.15  Aligned_cols=120  Identities=16%  Similarity=0.078  Sum_probs=72.0

Q ss_pred             ccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccc--hhHhhhccCCCCCCCCccEEEccccccee--ecC-ch
Q 039018           45 TSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEI--LEIFHSFSRDNWTLRSLQILDIACNNLSG--AIP-AC  118 (181)
Q Consensus        45 ~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~~~~~~~~L~~L~l~~n~i~~--~~p-~~  118 (181)
                      ++|++ ++++|.+.+..+..++.+++|++|++++|.+.+..  +..+     .+..+++|+.|++++|++++  .++ ..
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----~~~~l~~L~~L~L~~N~l~~~~~~~~~~  223 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL-----CPLKFPTLQVLALRNAGMETPSGVCSAL  223 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS-----CTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH-----HhccCCCCCEEECCCCcCcchHHHHHHH
Confidence            67777 77777777666677777777777777777765432  2221     01466777777777777762  122 22


Q ss_pred             hhccccccc-ccccc------------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCccc
Q 039018          119 ISNSSARKE-VGYTS------------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK  173 (181)
Q Consensus       119 ~~~~~~l~~-~~~~n------------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~  173 (181)
                      +..+++|++ .+.+|            .+++|++|++++|.++ .+|..+ .  ++|+.|+|++|.++
T Consensus       224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~-~--~~L~~L~Ls~N~l~  287 (312)
T 1wwl_A          224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL-P--AKLSVLDLSYNRLD  287 (312)
T ss_dssp             HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC-C--SEEEEEECCSSCCC
T ss_pred             HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc-c--CCceEEECCCCCCC
Confidence            335555555 33333            2345666666666666 556554 2  56666666666666

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.79  E-value=1.1e-18  Score=138.37  Aligned_cols=156  Identities=21%  Similarity=0.158  Sum_probs=79.2

Q ss_pred             CCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccc
Q 039018            4 NGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQ   82 (181)
Q Consensus         4 ~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~   82 (181)
                      ..+.++++|+.|++++|.+.+.           .+..+.++++|+. ++++|.+....+..+..+++|++|++++|.+..
T Consensus        93 ~~~~~l~~L~~L~Ls~n~i~~~-----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  161 (452)
T 3zyi_A           93 DTFRHLHHLEVLQLGRNSIRQI-----------EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES  161 (452)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEE-----------CTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE
T ss_pred             HHcCCCCCCCEEECCCCccCCc-----------ChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce
Confidence            3344444444444444444422           2244556666666 666666664444456666666666666666654


Q ss_pred             cchhHhhhc-----------------c-CCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------
Q 039018           83 EILEIFHSF-----------------S-RDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------  132 (181)
Q Consensus        83 ~~~~~~~~~-----------------~-~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------  132 (181)
                      ..+..+..+                 + ..+..+.+|+.|++++|.++ .+| .+..+++|++ .+.+|           
T Consensus       162 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~  239 (452)
T 3zyi_A          162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFH  239 (452)
T ss_dssp             ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGT
T ss_pred             eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCccccc
Confidence            333333100                 0 01234444555555555444 222 2344444444 33333           


Q ss_pred             cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCccc
Q 039018          133 ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK  173 (181)
Q Consensus       133 ~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~  173 (181)
                      .+++|+.|++++|++++..+..+ ..+++|+.|+|++|.++
T Consensus       240 ~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~  279 (452)
T 3zyi_A          240 GLSSLKKLWVMNSQVSLIERNAF-DGLASLVELNLAHNNLS  279 (452)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCS
T ss_pred             CccCCCEEEeCCCcCceECHHHh-cCCCCCCEEECCCCcCC
Confidence            34555666666666654444444 66666666666666666

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.79  E-value=1.5e-19  Score=134.48  Aligned_cols=151  Identities=22%  Similarity=0.221  Sum_probs=112.9

Q ss_pred             CCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCccccc
Q 039018            5 GPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQE   83 (181)
Q Consensus         5 ~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~   83 (181)
                      .+.++++|++|++++|.+++..+           ..+..+++|++ ++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus        80 ~l~~l~~L~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  148 (272)
T 3rfs_A           80 ALKELTNLTYLILTGNQLQSLPN-----------GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL  148 (272)
T ss_dssp             GGTTCTTCCEEECTTSCCCCCCT-----------TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             hhcCCCCCCEEECCCCccCccCh-----------hHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCcc
Confidence            56788899999999999883333           23566777777 7888887755555577788888888888877755


Q ss_pred             chhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcccEEEccCCccccCC
Q 039018           84 ILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFSGVL  151 (181)
Q Consensus        84 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~~~~  151 (181)
                      .+..+       ..+++|+.|++++|++++..+..+..+++|++ .+.+|           .+++|+++++++|.+.+. 
T Consensus       149 ~~~~~-------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-  220 (272)
T 3rfs_A          149 PKGVF-------DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-  220 (272)
T ss_dssp             CTTTT-------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-
T ss_pred             CHHHh-------ccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-
Confidence            55556       67777888888888777555555677777777 45444           467799999999988743 


Q ss_pred             ChhHHHhcccCCEeEecCCcccccCCCCCC
Q 039018          152 PAELVTDLVALRSLNLFHNHFKEKFPGSIH  181 (181)
Q Consensus       152 p~~~~~~l~~L~~L~L~~n~l~~~~p~~i~  181 (181)
                             ++.|+.+++..|.++|.+|.+++
T Consensus       221 -------~~~l~~l~~~~n~~~g~ip~~~~  243 (272)
T 3rfs_A          221 -------CPGIRYLSEWINKHSGVVRNSAG  243 (272)
T ss_dssp             -------TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred             -------CcHHHHHHHHHHhCCCcccCccc
Confidence                   55677888999999999998875

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.79  E-value=1.1e-19  Score=148.49  Aligned_cols=112  Identities=18%  Similarity=0.185  Sum_probs=51.4

Q ss_pred             cccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccc-cchhHhhhccCCCCCCCCccEEEcccccceeecCchh
Q 039018           42 GNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQ-EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI  119 (181)
Q Consensus        42 ~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~  119 (181)
                      ..+++|+. ++++|.+.+..|..+..+++|++|++++|.+.+ ..|..+       ..+++|+.|++++|++++..|..+
T Consensus       421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-------~~l~~L~~L~Ls~n~l~~~~~~~~  493 (606)
T 3vq2_A          421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF-------ANTTNLTFLDLSKCQLEQISWGVF  493 (606)
T ss_dssp             TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC-------TTCTTCCEEECTTSCCCEECTTTT
T ss_pred             hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhh-------ccCCCCCEEECCCCcCCccChhhh
Confidence            33444444 444444443344444444444444444444433 123333       445555555555555554444445


Q ss_pred             hcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCccc
Q 039018          120 SNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK  173 (181)
Q Consensus       120 ~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~  173 (181)
                      ..+++            |++|++++|++++..|..+ ..+++|+.|++++|+++
T Consensus       494 ~~l~~------------L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          494 DTLHR------------LQLLNMSHNNLLFLDSSHY-NQLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             TTCTT------------CCEEECCSSCCSCEEGGGT-TTCTTCCEEECTTSCCC
T ss_pred             ccccc------------CCEEECCCCcCCCcCHHHc-cCCCcCCEEECCCCcCc
Confidence            55444            4445555554443334333 44444555555555444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.79  E-value=1.3e-18  Score=142.25  Aligned_cols=176  Identities=22%  Similarity=0.216  Sum_probs=82.8

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccc-------------cccccCC-cccccccchh-ccccccccCCC--Cccc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTISS-GLGNLTSLKH-SISYNVLEGKL--PTSF   64 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~~l~~-~l~~l~~L~~-~l~~n~~~~~~--~~~~   64 (181)
                      +|..+.++++|+.|++++|.+.+..|..+..             +.+.++. .+..+++|+. ++++|.+.+..  +..+
T Consensus       293 lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  372 (606)
T 3t6q_A          293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL  372 (606)
T ss_dssp             CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT
T ss_pred             CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhc
Confidence            4555555566666666666655433433322             1112222 2444555555 55555554332  3445


Q ss_pred             CCCCCCcEEEcCCCcccccchhHhhhcc------------------CCCCCCCCccEEEcccccceeecCchhhcccccc
Q 039018           65 GRLREPRSISLSWANKSQEILEIFHSFS------------------RDNWTLRSLQILDIACNNLSGAIPACISNSSARK  126 (181)
Q Consensus        65 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~------------------~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~  126 (181)
                      ..+++|++|++++|.+.+..+..+..++                  ..+..+++|+.|++++|.+++..|..+..+++|+
T Consensus       373 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  452 (606)
T 3t6q_A          373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ  452 (606)
T ss_dssp             TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCC
T ss_pred             ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCC
Confidence            5555555555555555444444431100                  0013344444444444444433444444445544


Q ss_pred             c-ccccc--------------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCC
Q 039018          127 E-VGYTS--------------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPG  178 (181)
Q Consensus       127 ~-~~~~n--------------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~  178 (181)
                      + .+.+|              .+++|++|++++|.+++..|..+ ..+++|+.|+|++|.+++..|.
T Consensus       453 ~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~  518 (606)
T 3t6q_A          453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF-TSLKMMNHVDLSHNRLTSSSIE  518 (606)
T ss_dssp             EEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCCGGGGG
T ss_pred             EEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh-ccccCCCEEECCCCccCcCChh
Confidence            4 23322              23445555555555554444444 5555666666666665554443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.79  E-value=8.7e-20  Score=154.49  Aligned_cols=133  Identities=20%  Similarity=0.238  Sum_probs=102.3

Q ss_pred             cCCcccccccchh-ccccccccC-----------------CCCcccC--CCCCCcEEEcCCCcccccchhHhhhccCCCC
Q 039018           37 ISSGLGNLTSLKH-SISYNVLEG-----------------KLPTSFG--RLREPRSISLSWANKSQEILEIFHSFSRDNW   96 (181)
Q Consensus        37 l~~~l~~l~~L~~-~l~~n~~~~-----------------~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~   96 (181)
                      +|..++++++|+. ++++|.+++                 .+|+.++  .+++|++|++++|.+.+.+|..+       .
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-------~  512 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-------Y  512 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-------G
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-------h
Confidence            8888999999999 999999997                 3888888  99999999999999988999888       8


Q ss_pred             CCCCccEEEccccc-cee-ecCchhhccc-------cccc-ccccc------------cCCcccEEEccCCccccCCChh
Q 039018           97 TLRSLQILDIACNN-LSG-AIPACISNSS-------ARKE-VGYTS------------ILNLLRITDRSKNNFSGVLPAE  154 (181)
Q Consensus        97 ~~~~L~~L~l~~n~-i~~-~~p~~~~~~~-------~l~~-~~~~n------------~l~~L~~l~l~~n~~~~~~p~~  154 (181)
                      .+++|+.|++++|+ +++ .+|..++.+.       +|++ .+.+|            .+++|+.|++++|.++ .+| .
T Consensus       513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~  590 (876)
T 4ecn_A          513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-A  590 (876)
T ss_dssp             GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-C
T ss_pred             CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-h
Confidence            99999999999998 887 7888877765       6555 33333            3445666666666666 556 4


Q ss_pred             HHHhcccCCEeEecCCcccccCCCCC
Q 039018          155 LVTDLVALRSLNLFHNHFKEKFPGSI  180 (181)
Q Consensus       155 ~~~~l~~L~~L~L~~n~l~~~~p~~i  180 (181)
                      + +.+++|+.|+|++|.++ .+|..+
T Consensus       591 ~-~~L~~L~~L~Ls~N~l~-~lp~~l  614 (876)
T 4ecn_A          591 F-GTNVKLTDLKLDYNQIE-EIPEDF  614 (876)
T ss_dssp             C-CTTSEESEEECCSSCCS-CCCTTS
T ss_pred             h-cCCCcceEEECcCCccc-cchHHH
Confidence            4 66666666666666666 566544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=2.3e-18  Score=123.15  Aligned_cols=143  Identities=22%  Similarity=0.306  Sum_probs=108.7

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK   80 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (181)
                      +|..+  .++|+.|++++|.+. .++.          ..+..+++|++ ++++|.+.+..+..+..+++|++|++++|.+
T Consensus        22 ~p~~~--~~~l~~L~l~~n~l~-~~~~----------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l   88 (208)
T 2o6s_A           22 VPTGI--PAQTTYLDLETNSLK-SLPN----------GVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL   88 (208)
T ss_dssp             CCSCC--CTTCSEEECCSSCCC-CCCT----------TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCC--CCCCcEEEcCCCccC-cCCh----------hhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence            45444  458999999999998 3332          34678889999 9999999865556678899999999999998


Q ss_pred             cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcc
Q 039018           81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLV  160 (181)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~  160 (181)
                      .+..+..+       ..+++|+.|++++|++++..+..+..++            +|++|++++|.++ .++...+..++
T Consensus        89 ~~~~~~~~-------~~l~~L~~L~L~~N~l~~~~~~~~~~l~------------~L~~L~l~~N~l~-~~~~~~~~~l~  148 (208)
T 2o6s_A           89 QSLPNGVF-------DKLTQLKELALNTNQLQSLPDGVFDKLT------------QLKDLRLYQNQLK-SVPDGVFDRLT  148 (208)
T ss_dssp             CCCCTTTT-------TTCTTCCEEECCSSCCCCCCTTTTTTCT------------TCCEEECCSSCCS-CCCTTTTTTCT
T ss_pred             CccCHhHh-------cCccCCCEEEcCCCcCcccCHhHhccCC------------cCCEEECCCCccc-eeCHHHhccCC
Confidence            86666667       7889999999999999854445566644            4888888888888 44444337788


Q ss_pred             cCCEeEecCCcccccCC
Q 039018          161 ALRSLNLFHNHFKEKFP  177 (181)
Q Consensus       161 ~L~~L~L~~n~l~~~~p  177 (181)
                      +|+.|++++|.+.+..|
T Consensus       149 ~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A          149 SLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             TCCEEECCSCCBCCCTT
T ss_pred             CccEEEecCCCeecCCC
Confidence            88888888887766554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.79  E-value=1.5e-18  Score=137.23  Aligned_cols=157  Identities=21%  Similarity=0.160  Sum_probs=84.1

Q ss_pred             CCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccc
Q 039018            4 NGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQ   82 (181)
Q Consensus         4 ~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~   82 (181)
                      ..+.++++|+.|++++|.+.+..+           ..+.++++|+. ++++|.+....+..+..+++|++|++++|.+..
T Consensus        82 ~~~~~l~~L~~L~Ls~n~i~~i~~-----------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~  150 (440)
T 3zyj_A           82 NSFKHLRHLEILQLSRNHIRTIEI-----------GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES  150 (440)
T ss_dssp             TTTSSCSSCCEEECCSSCCCEECG-----------GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE
T ss_pred             HHhhCCCCCCEEECCCCcCCccCh-----------hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc
Confidence            445556666666666666553222           34556666666 666666664444456666666666666666654


Q ss_pred             cchhHhhhc-----------------c-CCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------
Q 039018           83 EILEIFHSF-----------------S-RDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------  132 (181)
Q Consensus        83 ~~~~~~~~~-----------------~-~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------  132 (181)
                      ..+..+..+                 + ..+..+.+|+.|++++|.++ .+|. +..+++|++ .+.+|           
T Consensus       151 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~  228 (440)
T 3zyj_A          151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQ  228 (440)
T ss_dssp             ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEECTTTTT
T ss_pred             cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCCCcccCEEECCCCccCccChhhhc
Confidence            433333100                 0 01144455555555555554 3332 444444444 33333           


Q ss_pred             cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccc
Q 039018          133 ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE  174 (181)
Q Consensus       133 ~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~  174 (181)
                      .+++|+.|++++|++++..+..+ ..+++|+.|+|++|.+++
T Consensus       229 ~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~  269 (440)
T 3zyj_A          229 GLMHLQKLWMIQSQIQVIERNAF-DNLQSLVEINLAHNNLTL  269 (440)
T ss_dssp             TCTTCCEEECTTCCCCEECTTSS-TTCTTCCEEECTTSCCCC
T ss_pred             cCccCCEEECCCCceeEEChhhh-cCCCCCCEEECCCCCCCc
Confidence            44556666666666664444444 666677777777777763

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.79  E-value=6.8e-19  Score=143.89  Aligned_cols=144  Identities=22%  Similarity=0.207  Sum_probs=111.2

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK   80 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (181)
                      ||..+.  +.+++|||++|.|+ .+|.          ..|.++++|++ ++++|.+.+..++.|.++++|++|++++|.+
T Consensus        46 vP~~lp--~~~~~LdLs~N~i~-~l~~----------~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l  112 (635)
T 4g8a_A           46 IPDNLP--FSTKNLDLSFNPLR-HLGS----------YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI  112 (635)
T ss_dssp             CCSSSC--TTCCEEECTTSCCC-EECT----------TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             cCCCCC--cCCCEEEeeCCCCC-CCCH----------HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence            565552  47899999999998 3332          45788999999 9999999976677899999999999999999


Q ss_pred             cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCcccc-CCChhHHHhc
Q 039018           81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSG-VLPAELVTDL  159 (181)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~-~~p~~~~~~l  159 (181)
                      .+..+..|       ..+.+|++|++++|++++..+..++.+++            |++|++++|.+++ .+|..+ +.+
T Consensus       113 ~~l~~~~f-------~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~------------L~~L~Ls~N~l~~~~~~~~~-~~l  172 (635)
T 4g8a_A          113 QSLALGAF-------SGLSSLQKLVAVETNLASLENFPIGHLKT------------LKELNVAHNLIQSFKLPEYF-SNL  172 (635)
T ss_dssp             CEECGGGG-------TTCTTCCEEECTTSCCCCSTTCCCTTCTT------------CCEEECCSSCCCCCCCCGGG-GGC
T ss_pred             CCCCHHHh-------cCCCCCCEEECCCCcCCCCChhhhhcCcc------------cCeeccccCccccCCCchhh-ccc
Confidence            87666778       89999999999999998554556777554            7777777777764 245555 777


Q ss_pred             ccCCEeEecCCcccccCCC
Q 039018          160 VALRSLNLFHNHFKEKFPG  178 (181)
Q Consensus       160 ~~L~~L~L~~n~l~~~~p~  178 (181)
                      ++|+.|++++|.+++..|.
T Consensus       173 ~~L~~L~L~~N~l~~~~~~  191 (635)
T 4g8a_A          173 TNLEHLDLSSNKIQSIYCT  191 (635)
T ss_dssp             TTCCEEECCSSCCCEECGG
T ss_pred             hhhhhhcccCccccccccc
Confidence            7777777777777654443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.78  E-value=1.7e-18  Score=128.86  Aligned_cols=113  Identities=20%  Similarity=0.199  Sum_probs=62.7

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK   80 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (181)
                      +|..+.  ++|+.|++++|.+++..+.           .+.++++|++ ++++|.+....+..+..+++|++|++++|.+
T Consensus        22 ip~~l~--~~l~~L~ls~n~l~~~~~~-----------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           22 IPDNLP--FSTKNLDLSFNPLRHLGSY-----------SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             CCSSSC--TTCCEEECTTCCCCEECTT-----------TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             cCCCCC--CCccEEECCCCcccccCHh-----------HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            566553  5799999999999843332           3455555666 6666665544444555566666666666655


Q ss_pred             cccchhHhhhcc-----------------CCCCCCCCccEEEccccccee-ecCchhhccccccc
Q 039018           81 SQEILEIFHSFS-----------------RDNWTLRSLQILDIACNNLSG-AIPACISNSSARKE  127 (181)
Q Consensus        81 ~~~~~~~~~~~~-----------------~~~~~~~~L~~L~l~~n~i~~-~~p~~~~~~~~l~~  127 (181)
                      .+..+..+..+.                 ..+..+++|+.|++++|.+++ .+|..+..+++|++
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~  153 (276)
T 2z62_A           89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH  153 (276)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred             CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCE
Confidence            544444441000                 011445555555555555543 23555555555444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.78  E-value=2e-18  Score=122.57  Aligned_cols=110  Identities=16%  Similarity=0.216  Sum_probs=73.8

Q ss_pred             ccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEccccc-ceeecCch
Q 039018           41 LGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNN-LSGAIPAC  118 (181)
Q Consensus        41 l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-i~~~~p~~  118 (181)
                      +..+++|+. ++++|.+.+..+..++.+++|++|++++|.+....+..+       ..+++|+.|++++|. ++ .+| .
T Consensus        84 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l-------~~l~~L~~L~L~~n~~i~-~~~-~  154 (197)
T 4ezg_A           84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI-------NTLPKVNSIDLSYNGAIT-DIM-P  154 (197)
T ss_dssp             GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHH-------TTCSSCCEEECCSCTBCC-CCG-G
T ss_pred             hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHH-------hhCCCCCEEEccCCCCcc-ccH-h
Confidence            555666666 666666665556666666777777777766665556666       666677777777765 44 444 3


Q ss_pred             hhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccc
Q 039018          119 ISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE  174 (181)
Q Consensus       119 ~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~  174 (181)
                      +..            +++|++|++++|.++ .++ .+ ..+++|+.|++++|++.+
T Consensus       155 l~~------------l~~L~~L~l~~n~i~-~~~-~l-~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          155 LKT------------LPELKSLNIQFDGVH-DYR-GI-EDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             GGG------------CSSCCEEECTTBCCC-CCT-TG-GGCSSCCEEEECBC----
T ss_pred             hcC------------CCCCCEEECCCCCCc-ChH-Hh-ccCCCCCEEEeeCcccCC
Confidence            444            455899999999998 455 55 889999999999998864

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.78  E-value=3e-18  Score=136.53  Aligned_cols=173  Identities=19%  Similarity=0.094  Sum_probs=86.5

Q ss_pred             CCCCCCcCCCeeeccCcccccccCccccc------------cccccC-Ccccccccchh-ccccccccCCCCcccCCCCC
Q 039018            4 NGPENLSSLRYLDLSDNQFNSTIPEWISR------------INCTIS-SGLGNLTSLKH-SISYNVLEGKLPTSFGRLRE   69 (181)
Q Consensus         4 ~~~~~l~~L~~L~ls~n~i~~~~p~~~~~------------~~~~l~-~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~   69 (181)
                      ..+.++++|+.|++++|.+.+..|..+..            ....+| ..+.++++|+. ++++|.+.+..+..+..+++
T Consensus        50 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  129 (477)
T 2id5_A           50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN  129 (477)
T ss_dssp             TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence            44555555555555555555444444332            001222 23455556666 66666655545555555555


Q ss_pred             CcEEEcCCCcccccchhHhhhcc-----------------CCCCCCCCccEEEcccccceeecCchhhccccccc-cccc
Q 039018           70 PRSISLSWANKSQEILEIFHSFS-----------------RDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYT  131 (181)
Q Consensus        70 L~~L~l~~n~~~~~~~~~~~~~~-----------------~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~  131 (181)
                      |+.|++++|.+.+..+..+..+.                 ..+..+++|+.|++++|.+++..+..+..+++|++ .+.+
T Consensus       130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~  209 (477)
T 2id5_A          130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH  209 (477)
T ss_dssp             CCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEEC
T ss_pred             CCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCC
Confidence            55555555555444443330000                 00044555555555555555444445555555555 2322


Q ss_pred             c-----------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCC
Q 039018          132 S-----------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFP  177 (181)
Q Consensus       132 n-----------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p  177 (181)
                      |           ...+|+.|++++|.++ .+|...+..+++|+.|+|++|.+++..+
T Consensus       210 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  265 (477)
T 2id5_A          210 WPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEG  265 (477)
T ss_dssp             CTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEECT
T ss_pred             CccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCccCh
Confidence            2           1225666666666666 4554333666667777776666664333

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.78  E-value=2.1e-18  Score=131.40  Aligned_cols=168  Identities=15%  Similarity=0.105  Sum_probs=95.6

Q ss_pred             CCCCCcCCCeeeccCcccccccCccccc------------cccccCCcccccccchh-ccccccccCCCCcccCCCCCCc
Q 039018            5 GPENLSSLRYLDLSDNQFNSTIPEWISR------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPR   71 (181)
Q Consensus         5 ~~~~l~~L~~L~ls~n~i~~~~p~~~~~------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~   71 (181)
                      .+.++++|++|++++|.+.+..|+.+..            ....+|..+.  ++|+. ++++|.+.+..+..+..+++|+
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~  148 (330)
T 1xku_A           71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMI  148 (330)
T ss_dssp             TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCC
T ss_pred             hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCcccc
Confidence            4556666666666666666444544432            0112222222  34444 4555555433333455555555


Q ss_pred             EEEcCCCcccc--cchhHhhhcc------------C--CCCCCCCccEEEcccccceeecCchhhccccccc-ccccc--
Q 039018           72 SISLSWANKSQ--EILEIFHSFS------------R--DNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS--  132 (181)
Q Consensus        72 ~L~l~~n~~~~--~~~~~~~~~~------------~--~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n--  132 (181)
                      +|++++|.+..  ..+..+..+.            .  .....++|+.|++++|.+++..|..+..+++|++ .+.+|  
T Consensus       149 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  228 (330)
T 1xku_A          149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI  228 (330)
T ss_dssp             EEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC
T ss_pred             EEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence            66655555432  2223331110            0  0011256667777777776555667777777776 44444  


Q ss_pred             ---------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccC
Q 039018          133 ---------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKF  176 (181)
Q Consensus       133 ---------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~  176 (181)
                               .+++|++|++++|.++ .+|..+ ..+++|+.|++++|.+++..
T Consensus       229 ~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l-~~l~~L~~L~l~~N~i~~~~  279 (330)
T 1xku_A          229 SAVDNGSLANTPHLRELHLNNNKLV-KVPGGL-ADHKYIQVVYLHNNNISAIG  279 (330)
T ss_dssp             CEECTTTGGGSTTCCEEECCSSCCS-SCCTTT-TTCSSCCEEECCSSCCCCCC
T ss_pred             ceeChhhccCCCCCCEEECCCCcCc-cCChhh-ccCCCcCEEECCCCcCCccC
Confidence                     4567888888888888 778777 88888888888888888433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.78  E-value=3.4e-18  Score=125.68  Aligned_cols=149  Identities=15%  Similarity=0.209  Sum_probs=122.4

Q ss_pred             cCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHh
Q 039018           10 SSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIF   88 (181)
Q Consensus        10 ~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~   88 (181)
                      ...+.++++++.++ .+|.           .+.  +.++. ++++|.+.+..+..+..+++|++|++++|.+.+..+..+
T Consensus        14 ~~~~~l~~~~~~l~-~~p~-----------~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~   79 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPS-----------GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF   79 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCS-----------CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             CCCeEEecCCCCcc-ccCC-----------CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh
Confidence            34678999999998 5554           332  46777 899999998888889999999999999999998777778


Q ss_pred             hhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcccEEEccCCccccCCChhHH
Q 039018           89 HSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFSGVLPAELV  156 (181)
Q Consensus        89 ~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~~~~p~~~~  156 (181)
                             ..+++|+.|++++|.+++..+..+..+++|++ .+.+|           .+++|++|++++|.+++..+..+ 
T Consensus        80 -------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-  151 (251)
T 3m19_A           80 -------DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF-  151 (251)
T ss_dssp             -------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-
T ss_pred             -------ccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHc-
Confidence                   89999999999999999666677889999998 56655           57889999999999994433355 


Q ss_pred             HhcccCCEeEecCCcccccCCCCC
Q 039018          157 TDLVALRSLNLFHNHFKEKFPGSI  180 (181)
Q Consensus       157 ~~l~~L~~L~L~~n~l~~~~p~~i  180 (181)
                      ..+++|+.|+|++|.+++..+..+
T Consensus       152 ~~l~~L~~L~L~~N~l~~~~~~~~  175 (251)
T 3m19_A          152 DKLTNLQTLSLSTNQLQSVPHGAF  175 (251)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             CcCcCCCEEECCCCcCCccCHHHH
Confidence            899999999999999995544443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.78  E-value=7e-19  Score=135.28  Aligned_cols=165  Identities=17%  Similarity=0.194  Sum_probs=110.4

Q ss_pred             CCCCCcCCCeeeccCcccccccCccccc------------cccccCCc-ccccccchh-ccccccccCCCCc--ccCCCC
Q 039018            5 GPENLSSLRYLDLSDNQFNSTIPEWISR------------INCTISSG-LGNLTSLKH-SISYNVLEGKLPT--SFGRLR   68 (181)
Q Consensus         5 ~~~~l~~L~~L~ls~n~i~~~~p~~~~~------------~~~~l~~~-l~~l~~L~~-~l~~n~~~~~~~~--~~~~l~   68 (181)
                      .+.++++|+.|++++|.+++..|..+..            ....++.. ++++++|++ ++++|.+. .+|.  .+..++
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~  149 (353)
T 2z80_A           71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLT  149 (353)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCT
T ss_pred             HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCC
Confidence            5777788888888888777544544432            01123332 566777777 77777777 3443  566777


Q ss_pred             CCcEEEcCCCc-ccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCC
Q 039018           69 EPRSISLSWAN-KSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILN  135 (181)
Q Consensus        69 ~L~~L~l~~n~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~  135 (181)
                      +|++|++++|. +....+..+       ..+++|+.|++++|.+++..|..+..+++|++ .+.+|           .++
T Consensus       150 ~L~~L~l~~n~~~~~~~~~~~-------~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~  222 (353)
T 2z80_A          150 KLQILRVGNMDTFTKIQRKDF-------AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS  222 (353)
T ss_dssp             TCCEEEEEESSSCCEECTTTT-------TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTT
T ss_pred             CCcEEECCCCccccccCHHHc-------cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcc
Confidence            77777777773 444445556       77888888888888888777888888888887 44444           356


Q ss_pred             cccEEEccCCccccC-------------------------------CChhHHHhcccCCEeEecCCcccccCCCC
Q 039018          136 LLRITDRSKNNFSGV-------------------------------LPAELVTDLVALRSLNLFHNHFKEKFPGS  179 (181)
Q Consensus       136 ~L~~l~l~~n~~~~~-------------------------------~p~~~~~~l~~L~~L~L~~n~l~~~~p~~  179 (181)
                      +|+.|++++|.+++.                               +|+.+ ..+++|+.|++++|.++ .+|..
T Consensus       223 ~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l-~~l~~L~~L~Ls~N~l~-~i~~~  295 (353)
T 2z80_A          223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL-NQISGLLELEFSRNQLK-SVPDG  295 (353)
T ss_dssp             TEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHH-HTCTTCCEEECCSSCCC-CCCTT
T ss_pred             cccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHH-hcccCCCEEECCCCCCC-ccCHH
Confidence            677777777777642                               23334 66777788888888777 66654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.78  E-value=5.9e-19  Score=126.23  Aligned_cols=140  Identities=21%  Similarity=0.208  Sum_probs=113.6

Q ss_pred             CCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccc
Q 039018            4 NGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQ   82 (181)
Q Consensus         4 ~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~   82 (181)
                      ..+.++++|+.|++++|.++ .+|.          ..+..+++|++ ++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus        46 ~~~~~l~~L~~L~l~~n~l~-~~~~----------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  114 (208)
T 2o6s_A           46 GVFDELTSLTQLYLGGNKLQ-SLPN----------GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS  114 (208)
T ss_dssp             TTTTTCTTCSEEECCSSCCC-CCCT----------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             hhhcccccCcEEECCCCccC-ccCh----------hhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcc
Confidence            34678999999999999998 3443          34678999999 999999996666668899999999999999987


Q ss_pred             cchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccC
Q 039018           83 EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVAL  162 (181)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L  162 (181)
                      ..+..+       ..+++|+.|++++|++++..+..+..++            +|+++++++|.+.+        .++.|
T Consensus       115 ~~~~~~-------~~l~~L~~L~l~~N~l~~~~~~~~~~l~------------~L~~L~l~~N~~~~--------~~~~l  167 (208)
T 2o6s_A          115 LPDGVF-------DKLTQLKDLRLYQNQLKSVPDGVFDRLT------------SLQYIWLHDNPWDC--------TCPGI  167 (208)
T ss_dssp             CCTTTT-------TTCTTCCEEECCSSCCSCCCTTTTTTCT------------TCCEEECCSCCBCC--------CTTTT
T ss_pred             cCHhHh-------ccCCcCCEEECCCCccceeCHHHhccCC------------CccEEEecCCCeec--------CCCCH
Confidence            666667       8899999999999999854444566644            48889999987763        45567


Q ss_pred             CEeEecCCcccccCCCCCC
Q 039018          163 RSLNLFHNHFKEKFPGSIH  181 (181)
Q Consensus       163 ~~L~L~~n~l~~~~p~~i~  181 (181)
                      +.|+++.|.++|.+|.+++
T Consensus       168 ~~L~~~~n~~~g~ip~~~~  186 (208)
T 2o6s_A          168 RYLSEWINKHSGVVRNSAG  186 (208)
T ss_dssp             HHHHHHHHHCTTTBBCTTS
T ss_pred             HHHHHHHHhCCceeeccCc
Confidence            7888888899988888764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.77  E-value=1.9e-18  Score=141.20  Aligned_cols=158  Identities=16%  Similarity=0.099  Sum_probs=125.1

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK   80 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (181)
                      +|..+.  +.++.|++++|.+++..|           ..+.++++|++ ++++|.+.+..|..+..+++|++|++++|.+
T Consensus        27 iP~~l~--~~l~~L~Ls~n~i~~~~~-----------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   93 (606)
T 3t6q_A           27 IPGTLP--NSTECLEFSFNVLPTIQN-----------TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL   93 (606)
T ss_dssp             CCTTSC--TTCCEEECTTCCCSEECT-----------TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             CcCCCC--CcCcEEEccCCccCcCCh-----------hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence            566654  378899999999884333           45678888888 8888888877788888888888888888888


Q ss_pred             cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcccEEEccCCccc
Q 039018           81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFS  148 (181)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~  148 (181)
                      .+..|..+       ..+.+|++|++++|.+++..|..++.+++|++ .+.+|           .+++|++|++++|.++
T Consensus        94 ~~~~~~~~-------~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  166 (606)
T 3t6q_A           94 IFMAETAL-------SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH  166 (606)
T ss_dssp             SEECTTTT-------SSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC
T ss_pred             cccChhhh-------cccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc
Confidence            87777777       88888888888888887555667788888888 55554           4567999999999999


Q ss_pred             cCCChhHHHhcccCC--EeEecCCcccccCCCCC
Q 039018          149 GVLPAELVTDLVALR--SLNLFHNHFKEKFPGSI  180 (181)
Q Consensus       149 ~~~p~~~~~~l~~L~--~L~L~~n~l~~~~p~~i  180 (181)
                      +..|..+ +.+++|+  .|++++|.+++..|..+
T Consensus       167 ~~~~~~~-~~l~~L~~l~L~l~~n~l~~~~~~~~  199 (606)
T 3t6q_A          167 YLSKEDM-SSLQQATNLSLNLNGNDIAGIEPGAF  199 (606)
T ss_dssp             EECHHHH-HTTTTCCSEEEECTTCCCCEECTTTT
T ss_pred             ccChhhh-hhhcccceeEEecCCCccCccChhHh
Confidence            6556556 9999999  89999999997777654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.77  E-value=1.6e-18  Score=141.68  Aligned_cols=140  Identities=21%  Similarity=0.183  Sum_probs=83.3

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK   80 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (181)
                      +|..+.  ++|+.|++++|.+++..+           ..+.++++|++ ++++|.+.+..|..+.++++|++|++++|.+
T Consensus        26 ip~~~~--~~l~~L~Ls~n~l~~~~~-----------~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l   92 (606)
T 3vq2_A           26 VPDDIP--SSTKNIDLSFNPLKILKS-----------YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI   92 (606)
T ss_dssp             CCTTSC--TTCCEEECTTSCCCEECT-----------TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             CCCCCC--CCcCEEECCCCCcCEeCh-----------hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc
Confidence            555543  677788888887773222           34566677777 7777777655566667777777777777776


Q ss_pred             cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCcccc-CCChhHHHhc
Q 039018           81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSG-VLPAELVTDL  159 (181)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~-~~p~~~~~~l  159 (181)
                      .+..|..+       ..+.+|++|++++|.+++..+..++.+++            |++|++++|.+.+ .+|..+ +.+
T Consensus        93 ~~~~p~~~-------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~------------L~~L~L~~n~l~~~~lp~~~-~~l  152 (606)
T 3vq2_A           93 QSFSPGSF-------SGLTSLENLVAVETKLASLESFPIGQLIT------------LKKLNVAHNFIHSCKLPAYF-SNL  152 (606)
T ss_dssp             CCCCTTSS-------TTCTTCCEEECTTSCCCCSSSSCCTTCTT------------CCEEECCSSCCCCCCCCGGG-GTC
T ss_pred             cccChhhc-------CCcccCCEEEccCCccccccccccCCCCC------------CCEEeCCCCcccceechHhH-hhc
Confidence            66556666       66777777777777766444455555444            4444444444442 234444 444


Q ss_pred             ccCCEeEecCCcccc
Q 039018          160 VALRSLNLFHNHFKE  174 (181)
Q Consensus       160 ~~L~~L~L~~n~l~~  174 (181)
                      ++|+.|++++|.+++
T Consensus       153 ~~L~~L~Ls~n~l~~  167 (606)
T 3vq2_A          153 TNLVHVDLSYNYIQT  167 (606)
T ss_dssp             TTCCEEECCSSCCCE
T ss_pred             CCCCEEEccCCccee
Confidence            444444444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.77  E-value=9.4e-18  Score=137.33  Aligned_cols=171  Identities=17%  Similarity=0.127  Sum_probs=125.3

Q ss_pred             CCCCCCCcCCCeeeccCcccccccCccccc------------cccccCCc-ccccccchh-ccccccccCCCCcccCCCC
Q 039018            3 PNGPENLSSLRYLDLSDNQFNSTIPEWISR------------INCTISSG-LGNLTSLKH-SISYNVLEGKLPTSFGRLR   68 (181)
Q Consensus         3 p~~~~~l~~L~~L~ls~n~i~~~~p~~~~~------------~~~~l~~~-l~~l~~L~~-~l~~n~~~~~~~~~~~~l~   68 (181)
                      |..+.++++|+.|++++|.+.+..|..+..            ....+|.. ++.+++|+. ++++|.+.+..|..++.++
T Consensus        92 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  171 (597)
T 3oja_B           92 TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT  171 (597)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred             hHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCC
Confidence            346777777777777777777555544433            11134443 577888888 8888888877777788888


Q ss_pred             CCcEEEcCCCcccccchhHhhhc----------------------------------------------------cCCCC
Q 039018           69 EPRSISLSWANKSQEILEIFHSF----------------------------------------------------SRDNW   96 (181)
Q Consensus        69 ~L~~L~l~~n~~~~~~~~~~~~~----------------------------------------------------~~~~~   96 (181)
                      +|++|++++|.+.+.....+..+                                                    +..+.
T Consensus       172 ~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~  251 (597)
T 3oja_B          172 SLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLL  251 (597)
T ss_dssp             TCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGG
T ss_pred             cCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhc
Confidence            88888888887764322211110                                                    01125


Q ss_pred             CCCCccEEEcccccceeecCchhhccccccc-ccccc----------cCCcccEEEccCCccccCCChhHHHhcccCCEe
Q 039018           97 TLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS----------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSL  165 (181)
Q Consensus        97 ~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n----------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L  165 (181)
                      .+++|+.|++++|.+++..|..++.+++|++ .+.+|          .+++|+.|++++|.++ .+|..+ ..+++|+.|
T Consensus       252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~-~~l~~L~~L  329 (597)
T 3oja_B          252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQ-PQFDRLENL  329 (597)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGH-HHHTTCSEE
T ss_pred             cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCccc-ccCCCCCEE
Confidence            5678899999999998888889999999999 56666          4788999999999998 788887 899999999


Q ss_pred             EecCCccccc
Q 039018          166 NLFHNHFKEK  175 (181)
Q Consensus       166 ~L~~n~l~~~  175 (181)
                      +|++|.+++.
T Consensus       330 ~L~~N~l~~~  339 (597)
T 3oja_B          330 YLDHNSIVTL  339 (597)
T ss_dssp             ECCSSCCCCC
T ss_pred             ECCCCCCCCc
Confidence            9999999843

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.77  E-value=6.2e-18  Score=128.81  Aligned_cols=159  Identities=17%  Similarity=0.188  Sum_probs=85.5

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccc-------------cccccCCcccccccchh-ccccccccCCCCcccCCC
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRL   67 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l   67 (181)
                      +|..+.  +.++.|++++|.+++..+..+..             +....|..+.++++|+. ++++|.+. .+|..+.  
T Consensus        46 lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--  120 (330)
T 1xku_A           46 VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--  120 (330)
T ss_dssp             CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--
T ss_pred             cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--
Confidence            565553  68999999999999544433322             12222444444445554 55555444 3333322  


Q ss_pred             CCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEccccccee--ecCchhhccccccc-ccccc--------cCCc
Q 039018           68 REPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSG--AIPACISNSSARKE-VGYTS--------ILNL  136 (181)
Q Consensus        68 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~--~~p~~~~~~~~l~~-~~~~n--------~l~~  136 (181)
                      ++|++|++++|.+.+..+..+       ..+++|+.|++++|.++.  ..+..+..+++|++ .+.+|        ..++
T Consensus       121 ~~L~~L~l~~n~l~~~~~~~~-------~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~  193 (330)
T 1xku_A          121 KTLQELRVHENEITKVRKSVF-------NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS  193 (330)
T ss_dssp             TTCCEEECCSSCCCBBCHHHH-------TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTT
T ss_pred             ccccEEECCCCcccccCHhHh-------cCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccccc
Confidence            445555555555554444555       677788888888887752  45566777777766 34333        1133


Q ss_pred             ccEEEccCCccccCCChhHHHhcccCCEeEecCCccc
Q 039018          137 LRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK  173 (181)
Q Consensus       137 L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~  173 (181)
                      |++|++++|.+++..|..+ ..+++|+.|++++|.++
T Consensus       194 L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~  229 (330)
T 1xku_A          194 LTELHLDGNKITKVDAASL-KGLNNLAKLGLSFNSIS  229 (330)
T ss_dssp             CSEEECTTSCCCEECTGGG-TTCTTCCEEECCSSCCC
T ss_pred             CCEEECCCCcCCccCHHHh-cCCCCCCEEECCCCcCc
Confidence            4445555554443333333 44444444444444444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.77  E-value=2e-18  Score=137.50  Aligned_cols=153  Identities=23%  Similarity=0.280  Sum_probs=94.2

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK   80 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (181)
                      +|..+.  +.++.|++++|.+++..|+           .+.++++|++ ++++|.+.+..|..+.++++|++|++++|.+
T Consensus        26 ip~~~~--~~l~~L~L~~n~l~~~~~~-----------~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l   92 (477)
T 2id5_A           26 VPEGIP--TETRLLDLGKNRIKTLNQD-----------EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL   92 (477)
T ss_dssp             CCSCCC--TTCSEEECCSSCCCEECTT-----------TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCCC--CCCcEEECCCCccceECHh-----------HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence            666653  6899999999999954443           3555666666 6666666655566666666666666666666


Q ss_pred             cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcccEEEccCCccc
Q 039018           81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFS  148 (181)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~  148 (181)
                      ....+..+       ..+++|+.|++++|.+++..|..+..+++|++ .+.+|           .+++|+.|++++|.++
T Consensus        93 ~~~~~~~~-------~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  165 (477)
T 2id5_A           93 KLIPLGVF-------TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT  165 (477)
T ss_dssp             CSCCTTSS-------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred             CccCcccc-------cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence            54433444       55666666666666666555555666666665 33333           3455666666666666


Q ss_pred             cCCChhHHHhcccCCEeEecCCccccc
Q 039018          149 GVLPAELVTDLVALRSLNLFHNHFKEK  175 (181)
Q Consensus       149 ~~~p~~~~~~l~~L~~L~L~~n~l~~~  175 (181)
                       .++...+..+++|+.|++++|.+++.
T Consensus       166 -~~~~~~l~~l~~L~~L~l~~n~i~~~  191 (477)
T 2id5_A          166 -SIPTEALSHLHGLIVLRLRHLNINAI  191 (477)
T ss_dssp             -SCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred             -ccChhHhcccCCCcEEeCCCCcCcEe
Confidence             34443336666666666666666543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.77  E-value=3e-18  Score=135.48  Aligned_cols=149  Identities=21%  Similarity=0.215  Sum_probs=104.4

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK   80 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (181)
                      +|..+.  +.++.|++++|++.+..+           ..+.++++|+. ++++|.+....+..+.++++|++|++++|.+
T Consensus        58 iP~~~~--~~l~~L~L~~n~i~~~~~-----------~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l  124 (440)
T 3zyj_A           58 VPDGIS--TNTRLLNLHENQIQIIKV-----------NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL  124 (440)
T ss_dssp             CCSCCC--TTCSEEECCSCCCCEECT-----------TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred             CCCCCC--CCCcEEEccCCcCCeeCH-----------HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence            566654  678999999999984333           45788999999 9999999977778899999999999999999


Q ss_pred             cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc------------cCCcccEEEccCCcc
Q 039018           81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS------------ILNLLRITDRSKNNF  147 (181)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n------------~l~~L~~l~l~~n~~  147 (181)
                      ....+..+       ..+++|+.|++++|+++...+..+..+++|++ .+.++            .+++|++|++++|.+
T Consensus       125 ~~~~~~~~-------~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l  197 (440)
T 3zyj_A          125 TTIPNGAF-------VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL  197 (440)
T ss_dssp             SSCCTTTS-------CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred             CeeCHhHh-------hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence            86666667       78888999999998888555556667777766 33331            344455555555544


Q ss_pred             ccCCChhHHHhcccCCEeEecCCccc
Q 039018          148 SGVLPAELVTDLVALRSLNLFHNHFK  173 (181)
Q Consensus       148 ~~~~p~~~~~~l~~L~~L~L~~n~l~  173 (181)
                      + .+|. + ..+++|+.|+|++|.++
T Consensus       198 ~-~~~~-~-~~l~~L~~L~Ls~N~l~  220 (440)
T 3zyj_A          198 R-EIPN-L-TPLIKLDELDLSGNHLS  220 (440)
T ss_dssp             S-SCCC-C-TTCSSCCEEECTTSCCC
T ss_pred             c-cccc-c-CCCcccCEEECCCCccC
Confidence            4 3332 2 34444444444444444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.77  E-value=1.2e-17  Score=129.95  Aligned_cols=169  Identities=17%  Similarity=0.133  Sum_probs=119.5

Q ss_pred             CCCCCCcCCCeeeccCcccccccCccccc------------cccccCCc-ccccccchh-ccccccccCCCCcccCCCCC
Q 039018            4 NGPENLSSLRYLDLSDNQFNSTIPEWISR------------INCTISSG-LGNLTSLKH-SISYNVLEGKLPTSFGRLRE   69 (181)
Q Consensus         4 ~~~~~l~~L~~L~ls~n~i~~~~p~~~~~------------~~~~l~~~-l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~   69 (181)
                      ..+.++++|+.|++++|.+.+..|..+..            ....+|.. +.++++|++ ++++|.+.+..+..+..+++
T Consensus        87 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  166 (390)
T 3o6n_A           87 YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS  166 (390)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTT
T ss_pred             hhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCC
Confidence            35666777777777777776544444433            11134444 467778888 88888887666667778888


Q ss_pred             CcEEEcCCCcccccchhHhhhc----------------------------------------------------cCCCCC
Q 039018           70 PRSISLSWANKSQEILEIFHSF----------------------------------------------------SRDNWT   97 (181)
Q Consensus        70 L~~L~l~~n~~~~~~~~~~~~~----------------------------------------------------~~~~~~   97 (181)
                      |++|++++|.+.+.....+..+                                                    ...+..
T Consensus       167 L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~  246 (390)
T 3o6n_A          167 LQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLN  246 (390)
T ss_dssp             CCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGG
T ss_pred             CCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcC
Confidence            8888888877654321111110                                                    001245


Q ss_pred             CCCccEEEcccccceeecCchhhccccccc-ccccc----------cCCcccEEEccCCccccCCChhHHHhcccCCEeE
Q 039018           98 LRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS----------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLN  166 (181)
Q Consensus        98 ~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n----------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~  166 (181)
                      +++|+.|++++|.+++..|..+..+++|++ .+.+|          .+++|++|++++|+++ .+|..+ ..+++|+.|+
T Consensus       247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~-~~l~~L~~L~  324 (390)
T 3o6n_A          247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQ-PQFDRLENLY  324 (390)
T ss_dssp             CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGH-HHHTTCSEEE
T ss_pred             CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccc-cccCcCCEEE
Confidence            678888889999888777888889999988 55555          5788999999999998 778777 8899999999


Q ss_pred             ecCCcccc
Q 039018          167 LFHNHFKE  174 (181)
Q Consensus       167 L~~n~l~~  174 (181)
                      +++|.++.
T Consensus       325 L~~N~i~~  332 (390)
T 3o6n_A          325 LDHNSIVT  332 (390)
T ss_dssp             CCSSCCCC
T ss_pred             CCCCccce
Confidence            99999983

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.77  E-value=2.3e-18  Score=136.50  Aligned_cols=158  Identities=18%  Similarity=0.155  Sum_probs=115.5

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK   80 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (181)
                      +|..+.  ++++.|++++|.|.+..|           ..+.++++|+. ++++|.+.+..+..+..+++|++|++++|.+
T Consensus        69 iP~~~~--~~l~~L~L~~n~i~~~~~-----------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  135 (452)
T 3zyi_A           69 VPQGIP--SNTRYLNLMENNIQMIQA-----------DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL  135 (452)
T ss_dssp             CCSCCC--TTCSEEECCSSCCCEECT-----------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             cCCCCC--CCccEEECcCCcCceECH-----------HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence            565553  689999999999984333           55788999999 9999999988888999999999999999999


Q ss_pred             cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-cccc-------------------------c--
Q 039018           81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYT-------------------------S--  132 (181)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~-------------------------n--  132 (181)
                      ....+..+       ..+++|+.|++++|+++...+..+..+++|++ .+.+                         |  
T Consensus       136 ~~~~~~~~-------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l  208 (452)
T 3zyi_A          136 TVIPSGAF-------EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI  208 (452)
T ss_dssp             SBCCTTTS-------SSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             CccChhhh-------cccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence            86666667       78888999999988887444445666666665 3322                         1  


Q ss_pred             -------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCCC
Q 039018          133 -------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI  180 (181)
Q Consensus       133 -------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i  180 (181)
                             .+++|+.|++++|.+++..|..+ ..+++|+.|++++|.+++..|..+
T Consensus       209 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~  262 (452)
T 3zyi_A          209 KDMPNLTPLVGLEELEMSGNHFPEIRPGSF-HGLSSLKKLWVMNSQVSLIERNAF  262 (452)
T ss_dssp             SSCCCCTTCTTCCEEECTTSCCSEECGGGG-TTCTTCCEEECTTSCCCEECTTTT
T ss_pred             cccccccccccccEEECcCCcCcccCcccc-cCccCCCEEEeCCCcCceECHHHh
Confidence                   33456666666666664445555 677777777777777775555443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.77  E-value=3.1e-18  Score=135.50  Aligned_cols=138  Identities=19%  Similarity=0.234  Sum_probs=116.3

Q ss_pred             cCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHh
Q 039018           10 SSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIF   88 (181)
Q Consensus        10 ~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~   88 (181)
                      +.|+.|++++|.+.+..|           ..++.+++|+. ++++|.+.+..|..+..+++|++|++++|.+.+..+..+
T Consensus       275 ~~L~~L~l~~n~l~~~~~-----------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  343 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLK-----------SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF  343 (455)
T ss_dssp             SCCCEEECCSSCCCEECT-----------TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred             cCceEEEecCccccccch-----------hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHh
Confidence            578888888888875444           45678888988 999999987778888899999999999999887778888


Q ss_pred             hhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEec
Q 039018           89 HSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLF  168 (181)
Q Consensus        89 ~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~  168 (181)
                             ..+++|+.|++++|++++..|..+..+            ++|++|++++|+++ .+|...+..+++|+.|+++
T Consensus       344 -------~~l~~L~~L~Ls~N~l~~~~~~~~~~l------------~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~  403 (455)
T 3v47_A          344 -------ENLDKLEVLDLSYNHIRALGDQSFLGL------------PNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLH  403 (455)
T ss_dssp             -------TTCTTCCEEECCSSCCCEECTTTTTTC------------TTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECC
T ss_pred             -------cCcccCCEEECCCCcccccChhhcccc------------ccccEEECCCCccc-cCCHhHhccCCcccEEEcc
Confidence                   889999999999999987778888774            45999999999999 4565444899999999999


Q ss_pred             CCcccccCCC
Q 039018          169 HNHFKEKFPG  178 (181)
Q Consensus       169 ~n~l~~~~p~  178 (181)
                      +|+++++.|.
T Consensus       404 ~N~l~~~~~~  413 (455)
T 3v47_A          404 TNPWDCSCPR  413 (455)
T ss_dssp             SSCBCCCTTT
T ss_pred             CCCcccCCCc
Confidence            9999998874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.77  E-value=6.5e-18  Score=128.85  Aligned_cols=169  Identities=20%  Similarity=0.131  Sum_probs=102.0

Q ss_pred             CCCCCCCcCCCeeeccCcccccccCccccc------------cccccCCcccccccchh-ccccccccCCCCcccCCCCC
Q 039018            3 PNGPENLSSLRYLDLSDNQFNSTIPEWISR------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLRE   69 (181)
Q Consensus         3 p~~~~~l~~L~~L~ls~n~i~~~~p~~~~~------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~   69 (181)
                      |..+.++++|+.|++++|.+++..|+.+..            ....+|..+.  ++|++ ++++|.+....+..+..+++
T Consensus        71 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~  148 (332)
T 2ft3_A           71 KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRN  148 (332)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSS
T ss_pred             HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCcc
Confidence            345666777777777777776444544432            0112333332  45555 56666665433344666777


Q ss_pred             CcEEEcCCCcccc--cchhHhhhc---------------cCCCCCCCCccEEEcccccceeecCchhhccccccc-cccc
Q 039018           70 PRSISLSWANKSQ--EILEIFHSF---------------SRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYT  131 (181)
Q Consensus        70 L~~L~l~~n~~~~--~~~~~~~~~---------------~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~  131 (181)
                      |++|++++|.+..  ..+..+..+               +.  .-..+|+.|++++|.+++..+..+..+++|++ .+.+
T Consensus       149 L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~--~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~  226 (332)
T 2ft3_A          149 MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH  226 (332)
T ss_dssp             CCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCS--SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCS
T ss_pred             CCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCc--cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence            7777777766642  223322110               00  01145666677777776555566777777777 4544


Q ss_pred             c-----------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCC
Q 039018          132 S-----------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFP  177 (181)
Q Consensus       132 n-----------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p  177 (181)
                      |           .+++|++|++++|+++ .+|..+ ..+++|+.|++++|.+++..+
T Consensus       227 N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l-~~l~~L~~L~l~~N~l~~~~~  281 (332)
T 2ft3_A          227 NQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL-PDLKLLQVVYLHTNNITKVGV  281 (332)
T ss_dssp             SCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG-GGCTTCCEEECCSSCCCBCCT
T ss_pred             CcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh-hcCccCCEEECCCCCCCccCh
Confidence            4           5667888888888888 788777 888888888888888884433

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.76  E-value=2.8e-18  Score=121.45  Aligned_cols=130  Identities=21%  Similarity=0.221  Sum_probs=95.7

Q ss_pred             CeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCc-ccCCCCCCcEEEcCCCcccccchhHhhh
Q 039018           13 RYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPT-SFGRLREPRSISLSWANKSQEILEIFHS   90 (181)
Q Consensus        13 ~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~   90 (181)
                      +.+++++|+++ .+|+           .+..  .+++ ++++|.+.+..+. .+..+++|++|++++|.+.+..|..+  
T Consensus        11 ~~l~~s~~~l~-~ip~-----------~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--   74 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPR-----------DIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF--   74 (192)
T ss_dssp             TEEECTTSCCS-SCCS-----------CCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT--
T ss_pred             CEEEcCCCCcC-cCcc-----------CCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc--
Confidence            67888888886 4554           2222  5666 7888888754443 37788888888888888887777777  


Q ss_pred             ccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCC
Q 039018           91 FSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHN  170 (181)
Q Consensus        91 ~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n  170 (181)
                           ..+.+|+.|++++|++++..+..+..+            ++|++|++++|++++..|..+ ..+++|+.|+|++|
T Consensus        75 -----~~l~~L~~L~Ls~N~l~~~~~~~~~~l------------~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           75 -----EGASHIQELQLGENKIKEISNKMFLGL------------HQLKTLNLYDNQISCVMPGSF-EHLNSLTSLNLASN  136 (192)
T ss_dssp             -----TTCTTCCEEECCSCCCCEECSSSSTTC------------TTCCEEECCSSCCCEECTTSS-TTCTTCCEEECTTC
T ss_pred             -----CCcccCCEEECCCCcCCccCHHHhcCC------------CCCCEEECCCCcCCeeCHHHh-hcCCCCCEEEeCCC
Confidence                 788888888888888886666666663            448888888888886667666 78888888888888


Q ss_pred             cccccC
Q 039018          171 HFKEKF  176 (181)
Q Consensus       171 ~l~~~~  176 (181)
                      .+++..
T Consensus       137 ~l~c~c  142 (192)
T 1w8a_A          137 PFNCNC  142 (192)
T ss_dssp             CBCCSG
T ss_pred             CccCcC
Confidence            877654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=5.8e-18  Score=130.73  Aligned_cols=139  Identities=25%  Similarity=0.235  Sum_probs=97.5

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCccc-ccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLG-NLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWAN   79 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~-~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~   79 (181)
                      +|..+.  +.++.|++++|.|++..+           ..+. .+++|+. ++++|.+....+..+..+++|++|++++|.
T Consensus        33 iP~~~~--~~l~~L~Ls~N~l~~l~~-----------~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (361)
T 2xot_A           33 VPQSLP--SYTALLDLSHNNLSRLRA-----------EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH   99 (361)
T ss_dssp             CCSSCC--TTCSEEECCSSCCCEECT-----------TSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             cCccCC--CCCCEEECCCCCCCccCh-----------hhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence            555543  457888888888883222           2344 7788888 888888886666778888889999999888


Q ss_pred             ccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHH---
Q 039018           80 KSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELV---  156 (181)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~---  156 (181)
                      +....+..|       ..+.+|+.|++++|++++..|..+..+++            |++|++++|+++ .+|..+|   
T Consensus       100 l~~~~~~~~-------~~l~~L~~L~L~~N~i~~~~~~~~~~l~~------------L~~L~L~~N~l~-~l~~~~~~~~  159 (361)
T 2xot_A          100 LHTLDEFLF-------SDLQALEVLLLYNNHIVVVDRNAFEDMAQ------------LQKLYLSQNQIS-RFPVELIKDG  159 (361)
T ss_dssp             CCEECTTTT-------TTCTTCCEEECCSSCCCEECTTTTTTCTT------------CCEEECCSSCCC-SCCGGGTC--
T ss_pred             CCcCCHHHh-------CCCcCCCEEECCCCcccEECHHHhCCccc------------CCEEECCCCcCC-eeCHHHhcCc
Confidence            876666667       78888899999988888666777777555            666666666665 4454443   


Q ss_pred             HhcccCCEeEecCCccc
Q 039018          157 TDLVALRSLNLFHNHFK  173 (181)
Q Consensus       157 ~~l~~L~~L~L~~n~l~  173 (181)
                      ..+++|+.|+|++|.++
T Consensus       160 ~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A          160 NKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             --CTTCCEEECCSSCCC
T ss_pred             ccCCcCCEEECCCCCCC
Confidence            34556666666666665

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.76  E-value=2e-18  Score=139.57  Aligned_cols=151  Identities=18%  Similarity=0.140  Sum_probs=107.9

Q ss_pred             CCCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCc
Q 039018            1 PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWAN   79 (181)
Q Consensus         1 ~lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~   79 (181)
                      +||..+.  ++|++|++++|.+++..|           ..+.++++|++ ++++|.+.+..|..++.+++|++|++++|.
T Consensus        19 ~ip~~~~--~~L~~L~Ls~n~l~~~~~-----------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~   85 (549)
T 2z81_A           19 SIPSGLT--AAMKSLDLSFNKITYIGH-----------GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH   85 (549)
T ss_dssp             SCCSCCC--TTCCEEECCSSCCCEECS-----------STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             cccccCC--CCccEEECcCCccCccCh-----------hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence            3677664  789999999999984333           45788999999 999999998777889999999999999999


Q ss_pred             ccccchhHhhhccCCCCCCCCccEEEccccccee-ecCchhhccccccc-ccccc------------cCCcccEEEccCC
Q 039018           80 KSQEILEIFHSFSRDNWTLRSLQILDIACNNLSG-AIPACISNSSARKE-VGYTS------------ILNLLRITDRSKN  145 (181)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~-~~p~~~~~~~~l~~-~~~~n------------~l~~L~~l~l~~n  145 (181)
                      +.+..+..+       +.+++|++|++++|.+++ ..|..++.+++|++ .+.+|            .+++|++|++++|
T Consensus        86 l~~~~~~~~-------~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n  158 (549)
T 2z81_A           86 LSSLSSSWF-------GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL  158 (549)
T ss_dssp             CCSCCHHHH-------TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             cCccCHHHh-------ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence            988777888       899999999999999975 35667777666444 22222            2334444555555


Q ss_pred             ccccCCChhHHHhcccCCEeEecCCcc
Q 039018          146 NFSGVLPAELVTDLVALRSLNLFHNHF  172 (181)
Q Consensus       146 ~~~~~~p~~~~~~l~~L~~L~L~~n~l  172 (181)
                      .+++..|..+ +.+++|+.|+++.|.+
T Consensus       159 ~l~~~~~~~l-~~l~~L~~L~l~~n~~  184 (549)
T 2z81_A          159 SLRNYQSQSL-KSIRDIHHLTLHLSES  184 (549)
T ss_dssp             TCCEECTTTT-TTCSEEEEEEEECSBS
T ss_pred             cccccChhhh-hccccCceEecccCcc
Confidence            4444444444 4444455555544443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.76  E-value=1.9e-18  Score=132.89  Aligned_cols=152  Identities=20%  Similarity=0.189  Sum_probs=86.4

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK   80 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (181)
                      +|..+.  ++|+.|++++|.+++ +|.          ..+.++++|+. ++++|.+.+..+..+..+++|++|++++|.+
T Consensus        46 iP~~~~--~~L~~L~l~~n~i~~-~~~----------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  112 (353)
T 2z80_A           46 IPSGLT--EAVKSLDLSNNRITY-ISN----------SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL  112 (353)
T ss_dssp             CCTTCC--TTCCEEECTTSCCCE-ECT----------TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             cccccc--ccCcEEECCCCcCcc-cCH----------HHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence            666654  589999999999984 332          23556666666 6666666655555566666666666666666


Q ss_pred             cccchhHhhhccCCCCCCCCccEEEcccccce--------------------------eecCchhhccccccc-ccccc-
Q 039018           81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLS--------------------------GAIPACISNSSARKE-VGYTS-  132 (181)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~--------------------------~~~p~~~~~~~~l~~-~~~~n-  132 (181)
                      .+..+..+       ..+++|++|++++|+++                          +..+..+..+++|++ .+.+| 
T Consensus       113 ~~~~~~~~-------~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          113 SNLSSSWF-------KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             SSCCHHHH-------TTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             CcCCHhHh-------CCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            54444445       44445555555554444                          233334444444444 22222 


Q ss_pred             ----------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccc
Q 039018          133 ----------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE  174 (181)
Q Consensus       133 ----------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~  174 (181)
                                .+++|++|++++|.+. .+|..++..+++|+.|++++|.+++
T Consensus       186 l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~  236 (353)
T 2z80_A          186 LQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDT  236 (353)
T ss_dssp             CCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTT
T ss_pred             cCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccc
Confidence                      3344555555555554 4444443456666666666666664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.76  E-value=2.5e-18  Score=130.22  Aligned_cols=74  Identities=24%  Similarity=0.179  Sum_probs=32.1

Q ss_pred             CCCCccEEEcccccceeecC-chhhccccccc-ccccc--------cCCcccEEEccCCccccCCChhHHHhcccCCEeE
Q 039018           97 TLRSLQILDIACNNLSGAIP-ACISNSSARKE-VGYTS--------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLN  166 (181)
Q Consensus        97 ~~~~L~~L~l~~n~i~~~~p-~~~~~~~~l~~-~~~~n--------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~  166 (181)
                      .+++|+.|++++|++++..| ..+..+++|++ .+.+|        ..++|++|++++|+++ .+|. + ..+++|+.|+
T Consensus       226 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~-~~p~-~-~~l~~L~~L~  302 (312)
T 1wwl_A          226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLD-RNPS-P-DELPQVGNLS  302 (312)
T ss_dssp             TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEEEEEECCSSCCC-SCCC-T-TTSCEEEEEE
T ss_pred             cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhccCCceEEECCCCCCC-CChh-H-hhCCCCCEEe
Confidence            34445555555555443332 22333444444 33333        0124445555555554 2233 3 4455555555


Q ss_pred             ecCCccc
Q 039018          167 LFHNHFK  173 (181)
Q Consensus       167 L~~n~l~  173 (181)
                      +++|+++
T Consensus       303 L~~N~l~  309 (312)
T 1wwl_A          303 LKGNPFL  309 (312)
T ss_dssp             CTTCTTT
T ss_pred             ccCCCCC
Confidence            5555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.76  E-value=6.5e-18  Score=116.90  Aligned_cols=138  Identities=19%  Similarity=0.164  Sum_probs=115.0

Q ss_pred             CCcCCCeeeccCcccc-cccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccch
Q 039018            8 NLSSLRYLDLSDNQFN-STIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEIL   85 (181)
Q Consensus         8 ~l~~L~~L~ls~n~i~-~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~   85 (181)
                      ..++|+.|++++|.+. +.+|           ..+..+++|+. ++++|.+.+.  ..+..+++|++|++++|.+.+..|
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~-----------~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~   88 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIE-----------GLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD   88 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCS-----------SCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCC
T ss_pred             CcccCCEEECCCCCCChhhHH-----------HHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHH
Confidence            3478999999999997 5444           44678899999 9999999854  778999999999999999987778


Q ss_pred             hHhhhccCCCCCCCCccEEEcccccceeecC--chhhcccccccccccccCCcccEEEccCCccccCCCh---hHHHhcc
Q 039018           86 EIFHSFSRDNWTLRSLQILDIACNNLSGAIP--ACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPA---ELVTDLV  160 (181)
Q Consensus        86 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p--~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~---~~~~~l~  160 (181)
                      ..+       ..+++|+.|++++|.++ .+|  ..+..            +++|++|++++|.++ .+|.   ..+..++
T Consensus        89 ~~~-------~~l~~L~~L~Ls~N~l~-~~~~~~~l~~------------l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~  147 (168)
T 2ell_A           89 MLA-------EKLPNLTHLNLSGNKLK-DISTLEPLKK------------LECLKSLDLFNCEVT-NLNDYRESVFKLLP  147 (168)
T ss_dssp             HHH-------HHCTTCCEEECBSSSCC-SSGGGGGGSS------------CSCCCEEECCSSGGG-TSTTHHHHHHTTCS
T ss_pred             HHH-------hhCCCCCEEeccCCccC-cchhHHHHhc------------CCCCCEEEeeCCcCc-chHHHHHHHHHhCc
Confidence            877       77999999999999998 444  55666            455999999999999 5554   3448999


Q ss_pred             cCCEeEecCCcccccCCCCC
Q 039018          161 ALRSLNLFHNHFKEKFPGSI  180 (181)
Q Consensus       161 ~L~~L~L~~n~l~~~~p~~i  180 (181)
                      +|+.|++++|.+. ++|.+.
T Consensus       148 ~L~~L~l~~n~~~-~~~~~~  166 (168)
T 2ell_A          148 QLTYLDGYDREDQ-EAPDSD  166 (168)
T ss_dssp             SCCEETTEETTSC-BCCSSS
T ss_pred             cCcEecCCCCChh-hccccc
Confidence            9999999999998 777653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.75  E-value=9.9e-18  Score=134.79  Aligned_cols=128  Identities=25%  Similarity=0.333  Sum_probs=110.5

Q ss_pred             cccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccc--cchhHhhhccCCCCCCCCccEEEcccccceeecCch
Q 039018           42 GNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQ--EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPAC  118 (181)
Q Consensus        42 ~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~  118 (181)
                      ..+++|+. ++++|.+.+..|..++.+++|++|++++|.+.+  ..|..+       ..+++|+.|++++|.+++.+|..
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~-------~~l~~L~~L~Ls~N~l~~~l~~~  393 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT-------TQMKSLQQLDISQNSVSYDEKKG  393 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH-------TTCTTCCEEECCSSCCBCCGGGC
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHH-------hhCCCCCEEECCCCcCCcccccc
Confidence            57788889 999999998889999999999999999999986  566778       89999999999999998657764


Q ss_pred             -hhccccccc-ccccccC---------CcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCC
Q 039018          119 -ISNSSARKE-VGYTSIL---------NLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGS  179 (181)
Q Consensus       119 -~~~~~~l~~-~~~~n~l---------~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~  179 (181)
                       +..+++|++ .+.+|.+         ++|++|++++|+++ .+|..+ ..+++|+.|++++|.++ .+|..
T Consensus       394 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~-~~l~~L~~L~L~~N~l~-~l~~~  462 (520)
T 2z7x_B          394 DCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQV-VKLEALQELNVASNQLK-SVPDG  462 (520)
T ss_dssp             SCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGG-GGCTTCCEEECCSSCCC-CCCTT
T ss_pred             hhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhh-hcCCCCCEEECCCCcCC-ccCHH
Confidence             778888888 6666633         68999999999999 899888 69999999999999999 67764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.75  E-value=2.1e-18  Score=139.85  Aligned_cols=131  Identities=20%  Similarity=0.234  Sum_probs=92.3

Q ss_pred             cccccccchh-ccccccccCCCC-cccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccce-eecC
Q 039018           40 GLGNLTSLKH-SISYNVLEGKLP-TSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLS-GAIP  116 (181)
Q Consensus        40 ~l~~l~~L~~-~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~p  116 (181)
                      .+..+++|+. ++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+       ..+++|+.|++++|.++ +.+|
T Consensus       391 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------~~l~~L~~L~l~~n~l~~~~~p  463 (570)
T 2z63_A          391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF-------NGLSSLEVLKMAGNSFQENFLP  463 (570)
T ss_dssp             EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTT-------TTCTTCCEEECTTCEEGGGEEC
T ss_pred             cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhh-------hcCCcCcEEECcCCcCccccch
Confidence            3566667777 777777665444 346667777777777777666666666       66777777777777765 4566


Q ss_pred             chhhccccccc-ccccc-----------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCC
Q 039018          117 ACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPG  178 (181)
Q Consensus       117 ~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~  178 (181)
                      ..+..+++|++ .+.+|           .+++|++|++++|++++..+..+ ..+++|+.|++++|.+++..|.
T Consensus       464 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF-DRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSSCBCCCTTT
T ss_pred             hhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh-hcccCCcEEEecCCcccCCCcc
Confidence            66666666666 44444           45678999999999985555555 8899999999999999887764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.75  E-value=4.9e-18  Score=123.87  Aligned_cols=153  Identities=14%  Similarity=0.149  Sum_probs=106.5

Q ss_pred             CCCCCcCCCeeeccCcc-cccccCccccccccccCCcccccccchh-cccc-ccccCCCCcccCCCCCCcEEEcCCCccc
Q 039018            5 GPENLSSLRYLDLSDNQ-FNSTIPEWISRINCTISSGLGNLTSLKH-SISY-NVLEGKLPTSFGRLREPRSISLSWANKS   81 (181)
Q Consensus         5 ~~~~l~~L~~L~ls~n~-i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~   81 (181)
                      .+.++++|+.|++++|. ++ .++.          ..+.++++|++ ++++ |.+....+..+..+++|++|++++|.+.
T Consensus        50 ~~~~l~~L~~L~l~~n~~l~-~i~~----------~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~  118 (239)
T 2xwt_C           50 AFSNLPNISRIYVSIDVTLQ-QLES----------HSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK  118 (239)
T ss_dssp             TTTTCTTCCEEEEECCSSCC-EECT----------TTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC
T ss_pred             HccCCCCCcEEeCCCCCCcc-eeCH----------hHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc
Confidence            45555666666666664 44 2221          34667777777 7877 7777555566777888888888887776


Q ss_pred             ccchhHhhhccCCCCCCCCcc---EEEcccc-cceeecCchhhcccccc-c-ccccc----------cCCcccEEEccCC
Q 039018           82 QEILEIFHSFSRDNWTLRSLQ---ILDIACN-NLSGAIPACISNSSARK-E-VGYTS----------ILNLLRITDRSKN  145 (181)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~L~---~L~l~~n-~i~~~~p~~~~~~~~l~-~-~~~~n----------~l~~L~~l~l~~n  145 (181)
                      + +|. +       ..+.+|+   .+++++| .+++..+..+..+++|+ + .+.+|          ..++|+.+++++|
T Consensus       119 ~-lp~-~-------~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n  189 (239)
T 2xwt_C          119 M-FPD-L-------TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN  189 (239)
T ss_dssp             S-CCC-C-------TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC
T ss_pred             c-ccc-c-------ccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC
Confidence            4 444 5       6666666   8888888 88755555688888888 6 45454          2357899999999


Q ss_pred             c-cccCCChhHHHhc-ccCCEeEecCCcccccCCCC
Q 039018          146 N-FSGVLPAELVTDL-VALRSLNLFHNHFKEKFPGS  179 (181)
Q Consensus       146 ~-~~~~~p~~~~~~l-~~L~~L~L~~n~l~~~~p~~  179 (181)
                      + ++ .++...|..+ ++|+.|++++|.++ .+|..
T Consensus       190 ~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~  223 (239)
T 2xwt_C          190 KYLT-VIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK  223 (239)
T ss_dssp             TTCC-EECTTTTTTCSBCCSEEECTTCCCC-CCCCT
T ss_pred             CCcc-cCCHHHhhccccCCcEEECCCCccc-cCChh
Confidence            5 88 5554444888 99999999999998 56653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.74  E-value=8.3e-18  Score=139.19  Aligned_cols=157  Identities=19%  Similarity=0.208  Sum_probs=106.5

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK   80 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (181)
                      ||..+.  ++++.|++++|.+++..+           ..+.++++|++ ++++|.+.+..|..++.+++|++|++++|.+
T Consensus        19 ip~~~~--~~l~~L~Ls~n~l~~~~~-----------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l   85 (680)
T 1ziw_A           19 VPDDLP--TNITVLNLTHNQLRRLPA-----------ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL   85 (680)
T ss_dssp             CCSCSC--TTCSEEECCSSCCCCCCG-----------GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred             cccccC--CCCcEEECCCCCCCCcCH-----------HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence            666654  688999999999884333           23566677777 7777777766666667777777777777766


Q ss_pred             cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcccEEEccCCccc
Q 039018           81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFS  148 (181)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~  148 (181)
                      .+..+..|       ..+.+|++|++++|.+++..|..++.+++|++ .+.+|           .+++|++|++++|.++
T Consensus        86 ~~l~~~~~-------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  158 (680)
T 1ziw_A           86 SQLSDKTF-------AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ  158 (680)
T ss_dssp             CCCCTTTT-------TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred             CccChhhh-------ccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc
Confidence            64444455       66777777777777776444456666666666 44444           4567888888888888


Q ss_pred             cCCChhHHH--hcccCCEeEecCCcccccCCCC
Q 039018          149 GVLPAELVT--DLVALRSLNLFHNHFKEKFPGS  179 (181)
Q Consensus       149 ~~~p~~~~~--~l~~L~~L~L~~n~l~~~~p~~  179 (181)
                      +..+..+ .  .+++|+.|++++|.+++..|.+
T Consensus       159 ~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~  190 (680)
T 1ziw_A          159 ALKSEEL-DIFANSSLKKLELSSNQIKEFSPGC  190 (680)
T ss_dssp             CBCHHHH-GGGTTCEESEEECTTCCCCCBCTTG
T ss_pred             ccCHHHh-hccccccccEEECCCCcccccChhh
Confidence            5444433 4  3478888899888888666654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.74  E-value=1.9e-17  Score=126.32  Aligned_cols=157  Identities=18%  Similarity=0.234  Sum_probs=90.4

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCc-
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWAN-   79 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-   79 (181)
                      +|..+.  ++|+.|++++|.+.+..|+           .+.++++|++ ++++|.+.+..|..++.+++|++|++++|. 
T Consensus        48 ip~~~~--~~l~~L~l~~n~i~~~~~~-----------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  114 (332)
T 2ft3_A           48 VPKEIS--PDTTLLDLQNNDISELRKD-----------DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL  114 (332)
T ss_dssp             CCSCCC--TTCCEEECCSSCCCEECTT-----------TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC
T ss_pred             cCCCCC--CCCeEEECCCCcCCccCHh-----------HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC
Confidence            444442  5677777777777643333           3444555555 555555554444445555555555555554 


Q ss_pred             --------------------ccccchhHhhhccCCCCCCCCccEEEccccccee--ecCchhhcc---------------
Q 039018           80 --------------------KSQEILEIFHSFSRDNWTLRSLQILDIACNNLSG--AIPACISNS---------------  122 (181)
Q Consensus        80 --------------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~--~~p~~~~~~---------------  122 (181)
                                          +....+..+       ..+++|+.|++++|.++.  ..|..+..+               
T Consensus       115 ~~l~~~~~~~L~~L~l~~n~i~~~~~~~~-------~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l  187 (332)
T 2ft3_A          115 VEIPPNLPSSLVELRIHDNRIRKVPKGVF-------SGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGI  187 (332)
T ss_dssp             CSCCSSCCTTCCEEECCSSCCCCCCSGGG-------SSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSC
T ss_pred             CccCccccccCCEEECCCCccCccCHhHh-------CCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCcc
Confidence                                443333334       677888888888887752  344444433               


Q ss_pred             -----ccccc-ccccc-----------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCCC
Q 039018          123 -----SARKE-VGYTS-----------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI  180 (181)
Q Consensus       123 -----~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i  180 (181)
                           ++|++ .+.+|           .+++|++|++++|.+++..+..+ ..+++|+.|++++|.++ .+|.++
T Consensus       188 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~-~lp~~l  260 (332)
T 2ft3_A          188 PKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL-SFLPTLRELHLDNNKLS-RVPAGL  260 (332)
T ss_dssp             CSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG-GGCTTCCEEECCSSCCC-BCCTTG
T ss_pred             CccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh-hCCCCCCEEECCCCcCe-ecChhh
Confidence                 22333 22222           45567777777777774444455 77778888888888877 677654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.74  E-value=1.4e-17  Score=137.84  Aligned_cols=163  Identities=26%  Similarity=0.261  Sum_probs=79.0

Q ss_pred             CCCCCCCcCCCeeeccCcccccccCc-cccc-------------cccccCCcccccccchh-cccccccc--CCCCcccC
Q 039018            3 PNGPENLSSLRYLDLSDNQFNSTIPE-WISR-------------INCTISSGLGNLTSLKH-SISYNVLE--GKLPTSFG   65 (181)
Q Consensus         3 p~~~~~l~~L~~L~ls~n~i~~~~p~-~~~~-------------~~~~l~~~l~~l~~L~~-~l~~n~~~--~~~~~~~~   65 (181)
                      |..+..+++|+.|++++|.+.+.+|. .+..             +....+..+..+++|+. ++++|.+.  +..|..+.
T Consensus       398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~  477 (680)
T 1ziw_A          398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ  477 (680)
T ss_dssp             TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred             hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence            45666677777777777777654442 1111             11112223333444444 44444433  23444455


Q ss_pred             CCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeec----C----chhhccccccc-ccccc----
Q 039018           66 RLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAI----P----ACISNSSARKE-VGYTS----  132 (181)
Q Consensus        66 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~----p----~~~~~~~~l~~-~~~~n----  132 (181)
                      .+++|++|++++|.+.+..+..+       ..+.+|+.|++++|++++..    |    ..+..+++|++ .+.+|    
T Consensus       478 ~l~~L~~L~Ls~N~l~~i~~~~~-------~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~  550 (680)
T 1ziw_A          478 PLRNLTILDLSNNNIANINDDML-------EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE  550 (680)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTT-------TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCC
T ss_pred             cCCCCCEEECCCCCCCcCChhhh-------ccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCC
Confidence            55555555555555554444444       55555666666665554221    1    11444444444 33332    


Q ss_pred             -------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCccc
Q 039018          133 -------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK  173 (181)
Q Consensus       133 -------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~  173 (181)
                             .+++|+.+++++|+++ .+|...|..+++|+.|+|++|.++
T Consensus       551 i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~  597 (680)
T 1ziw_A          551 IPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSLKSLNLQKNLIT  597 (680)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCCC
T ss_pred             CCHHHcccccCcceeECCCCCCC-cCCHhHhCCCCCCCEEECCCCcCC
Confidence                   3344555555555555 334333355555555555555555

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.74  E-value=5e-18  Score=132.11  Aligned_cols=100  Identities=20%  Similarity=0.162  Sum_probs=49.8

Q ss_pred             CCCCcCCCeeeccCcccccccCccccc-------------cccccCCcccccccchh-ccccccccCCCCcccCCCCCCc
Q 039018            6 PENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPR   71 (181)
Q Consensus         6 ~~~l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~   71 (181)
                      +.++++|++|++++|.+.+..+..+..             +....|..++++++|+. ++++|.+....+..+..+++|+
T Consensus        65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  144 (390)
T 3o6n_A           65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  144 (390)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence            355677888888888777433333322             11222333444455555 5555554422222234455555


Q ss_pred             EEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccce
Q 039018           72 SISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLS  112 (181)
Q Consensus        72 ~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~  112 (181)
                      +|++++|.+.+..+..+       ..+++|+.|++++|.++
T Consensus       145 ~L~L~~n~l~~~~~~~~-------~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          145 TLSMSNNNLERIEDDTF-------QATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             EEECCSSCCCBCCTTTT-------SSCTTCCEEECCSSCCS
T ss_pred             EEECCCCccCccChhhc-------cCCCCCCEEECCCCcCC
Confidence            55555555444334444       55555555555555554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.74  E-value=9.4e-18  Score=142.22  Aligned_cols=149  Identities=23%  Similarity=0.223  Sum_probs=71.6

Q ss_pred             CcCCCeeeccCcccccccCccccc-------------ccccc-CCcccccccchh-ccccccccCCCCcccCCCCCCcEE
Q 039018            9 LSSLRYLDLSDNQFNSTIPEWISR-------------INCTI-SSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSI   73 (181)
Q Consensus         9 l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~~l-~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L   73 (181)
                      .++|+.|++++|.|++..|..+..             ....+ |..+.++++|+. ++++|.+.+..|+.++.+++|++|
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred             CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence            467777888888777444433221             00011 233444444444 455444444444444445555555


Q ss_pred             EcCCCcccccchhH--hhhccCCCCCCCCccEEEcccccceeecC-chhhcccccccccccccCCcccEEEccCCccccC
Q 039018           74 SLSWANKSQEILEI--FHSFSRDNWTLRSLQILDIACNNLSGAIP-ACISNSSARKEVGYTSILNLLRITDRSKNNFSGV  150 (181)
Q Consensus        74 ~l~~n~~~~~~~~~--~~~~~~~~~~~~~L~~L~l~~n~i~~~~p-~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~  150 (181)
                      ++++|.+.+..+..  +       ..+++|+.|++++|.+++..+ ..++.+            ++|++|++++|.+++.
T Consensus       103 ~Ls~n~l~~~~~~~~~~-------~~L~~L~~L~Ls~N~l~~~~~~~~~~~L------------~~L~~L~Ls~N~i~~~  163 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYF-------RNLKALTRLDLSKNQIRSLYLHPSFGKL------------NSLKSIDFSSNQIFLV  163 (844)
T ss_dssp             ECTTCCCSSCCSTTCCC-------SSCSSCCEEEEESCCCCCCCCCGGGGTC------------SSCCEEEEESSCCCCC
T ss_pred             eCcCCCCCcccccCccc-------cccCCCCEEECCCCcccccccchhHhhC------------CCCCEEECCCCcCCee
Confidence            55544444333222  3       444555555555555443322 234443            4455556655555544


Q ss_pred             CChhHHHhc--ccCCEeEecCCcccccCC
Q 039018          151 LPAELVTDL--VALRSLNLFHNHFKEKFP  177 (181)
Q Consensus       151 ~p~~~~~~l--~~L~~L~L~~n~l~~~~p  177 (181)
                      .+..+ ..+  ++|+.|+++.|.+.+.+|
T Consensus       164 ~~~~l-~~l~~~~L~~L~L~~n~l~~~~~  191 (844)
T 3j0a_A          164 CEHEL-EPLQGKTLSFFSLAANSLYSRVS  191 (844)
T ss_dssp             CSGGG-HHHHHCSSCCCEECCSBSCCCCC
T ss_pred             CHHHc-ccccCCccceEECCCCccccccc
Confidence            44444 444  445555555555544443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.74  E-value=3.4e-18  Score=136.96  Aligned_cols=104  Identities=14%  Similarity=0.060  Sum_probs=80.7

Q ss_pred             CCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhh-ccccccc-ccccc---------cCC
Q 039018           67 LREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACIS-NSSARKE-VGYTS---------ILN  135 (181)
Q Consensus        67 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~-~~~~l~~-~~~~n---------~l~  135 (181)
                      +++|+.|++++|.+.+..|..+       ..+++|+.|++++|.+++..|..+. .+++|++ .+.+|         .++
T Consensus       119 l~~L~~L~L~~N~l~~~~~~~~-------~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~  191 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDLDE-------GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA  191 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCG-------GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCT
T ss_pred             cCCCCEEECCCCCCCCCCchhh-------cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCC
Confidence            3455566666666555555555       7788999999999999887777775 7888888 56666         578


Q ss_pred             cccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCCC
Q 039018          136 LLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI  180 (181)
Q Consensus       136 ~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i  180 (181)
                      +|++|++++|.+++ +|..+ ..+++|+.|+|++|.++ .+|..+
T Consensus       192 ~L~~L~Ls~N~l~~-~~~~~-~~l~~L~~L~Ls~N~l~-~lp~~l  233 (487)
T 3oja_A          192 KLKTLDLSSNKLAF-MGPEF-QSAAGVTWISLRNNKLV-LIEKAL  233 (487)
T ss_dssp             TCCEEECCSSCCCE-ECGGG-GGGTTCSEEECTTSCCC-EECTTC
T ss_pred             CCCEEECCCCCCCC-CCHhH-cCCCCccEEEecCCcCc-ccchhh
Confidence            89999999999994 56566 89999999999999999 577765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.74  E-value=5.3e-18  Score=138.78  Aligned_cols=100  Identities=20%  Similarity=0.162  Sum_probs=49.2

Q ss_pred             CCCCcCCCeeeccCcccccccCccccc-------------cccccCCcccccccchh-ccccccccCCCCcccCCCCCCc
Q 039018            6 PENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPR   71 (181)
Q Consensus         6 ~~~l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~   71 (181)
                      +.++++|+.|++++|.+.+..|..+..             +.+..|..++++++|+. ++++|.+....+..++.+++|+
T Consensus        71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  150 (597)
T 3oja_B           71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  150 (597)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence            355678888888888887544433322             12222233344444444 4444444422222234444444


Q ss_pred             EEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccce
Q 039018           72 SISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLS  112 (181)
Q Consensus        72 ~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~  112 (181)
                      +|++++|.+.+..|..+       ..+++|+.|++++|.++
T Consensus       151 ~L~Ls~N~l~~~~~~~~-------~~l~~L~~L~L~~N~l~  184 (597)
T 3oja_B          151 TLSMSNNNLERIEDDTF-------QATTSLQNLQLSSNRLT  184 (597)
T ss_dssp             EEECCSSCCCBCCTTTT-------TTCTTCCEEECTTSCCS
T ss_pred             EEEeeCCcCCCCChhhh-------hcCCcCcEEECcCCCCC
Confidence            44444444444444444       44555555555555544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=2.4e-17  Score=119.09  Aligned_cols=133  Identities=23%  Similarity=0.320  Sum_probs=110.2

Q ss_pred             CeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhc
Q 039018           13 RYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSF   91 (181)
Q Consensus        13 ~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~   91 (181)
                      +.++++++.++ .+|.           .+.  +.++. ++++|.+.+..+..+..+++|++|++++|.+.+..|..|   
T Consensus        14 ~~v~c~~~~l~-~iP~-----------~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~---   76 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPT-----------NLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF---   76 (220)
T ss_dssp             TEEECTTSCCS-SCCS-----------SCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT---
T ss_pred             CEEEcCCCCcC-cCCC-----------ccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh---
Confidence            57899999988 4554           332  56777 899999997777789999999999999999998888888   


Q ss_pred             cCCCCCCCCccEEEcccccceeecCc-hhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCC
Q 039018           92 SRDNWTLRSLQILDIACNNLSGAIPA-CISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHN  170 (181)
Q Consensus        92 ~~~~~~~~~L~~L~l~~n~i~~~~p~-~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n  170 (181)
                          ..+.+|++|++++|.++ .+|. .+..            +++|++|++++|++++..|..+ ..+++|+.|+|++|
T Consensus        77 ----~~l~~L~~L~Ls~N~l~-~l~~~~f~~------------l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N  138 (220)
T 2v9t_B           77 ----QGLRSLNSLVLYGNKIT-ELPKSLFEG------------LFSLQLLLLNANKINCLRVDAF-QDLHNLNLLSLYDN  138 (220)
T ss_dssp             ----TTCSSCCEEECCSSCCC-CCCTTTTTT------------CTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSS
T ss_pred             ----hCCcCCCEEECCCCcCC-ccCHhHccC------------CCCCCEEECCCCCCCEeCHHHc-CCCCCCCEEECCCC
Confidence                99999999999999998 5554 4566            4459999999999996656666 99999999999999


Q ss_pred             cccccCCCCC
Q 039018          171 HFKEKFPGSI  180 (181)
Q Consensus       171 ~l~~~~p~~i  180 (181)
                      .+++..+..+
T Consensus       139 ~l~~~~~~~~  148 (220)
T 2v9t_B          139 KLQTIAKGTF  148 (220)
T ss_dssp             CCSCCCTTTT
T ss_pred             cCCEECHHHH
Confidence            9995544444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.74  E-value=2e-17  Score=124.18  Aligned_cols=149  Identities=19%  Similarity=0.134  Sum_probs=104.3

Q ss_pred             CCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCccc
Q 039018            3 PNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKS   81 (181)
Q Consensus         3 p~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~   81 (181)
                      |..+.++++|+.|++++|.+++ ++.            .+.+++|+. ++++|.+. .+|..+..+++|++|++++|.+.
T Consensus        48 ~~~~~~l~~L~~L~L~~n~l~~-~~~------------~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~  113 (290)
T 1p9a_G           48 LATLMPYTRLTQLNLDRAELTK-LQV------------DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT  113 (290)
T ss_dssp             GGGGTTCTTCCEEECTTSCCCE-EEC------------CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC
T ss_pred             HHHhhcCCCCCEEECCCCccCc-ccC------------CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCc
Confidence            4567788899999999998873 222            145566666 66666666 55666666666666776666666


Q ss_pred             ccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcccEEEccCCcccc
Q 039018           82 QEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFSG  149 (181)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~~  149 (181)
                      +..+..|       ..+++|+.|++++|++++..+..+..+++|++ .+.+|           .+++|++|++++|+++ 
T Consensus       114 ~l~~~~~-------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-  185 (290)
T 1p9a_G          114 SLPLGAL-------RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-  185 (290)
T ss_dssp             CCCSSTT-------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             ccCHHHH-------cCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-
Confidence            5444555       66666666666666666433344556666666 44444           3677999999999999 


Q ss_pred             CCChhHHHhcccCCEeEecCCcccc
Q 039018          150 VLPAELVTDLVALRSLNLFHNHFKE  174 (181)
Q Consensus       150 ~~p~~~~~~l~~L~~L~L~~n~l~~  174 (181)
                      .+|..+ ..+..|+.++|++|.+..
T Consensus       186 ~ip~~~-~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          186 TIPKGF-FGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CCCTTT-TTTCCCSEEECCSCCBCC
T ss_pred             ccChhh-cccccCCeEEeCCCCccC
Confidence            889888 778899999999998864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.73  E-value=1.6e-18  Score=144.74  Aligned_cols=143  Identities=18%  Similarity=0.130  Sum_probs=112.4

Q ss_pred             CCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCccc
Q 039018            3 PNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKS   81 (181)
Q Consensus         3 p~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~   81 (181)
                      |..+..++.|+.|+|++|.+. .+|           ..+..+++|+. ++++|.++ .+|..++.+++|++|++++|.+.
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~-----------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~  283 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NIS-----------ANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT  283 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCC-----------GGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCC-----------hhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence            566778889999999999988 444           44567888999 99999998 88888999999999999999988


Q ss_pred             ccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcc-
Q 039018           82 QEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLV-  160 (181)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~-  160 (181)
                       .+|..+       +.+.+|++|++++|.++ .+|..++.++            +|++|++++|.+++.+|..+ ..+. 
T Consensus       284 -~lp~~~-------~~l~~L~~L~L~~N~l~-~lp~~~~~l~------------~L~~L~L~~N~l~~~~p~~~-~~~~~  341 (727)
T 4b8c_D          284 -SLPAEL-------GSCFQLKYFYFFDNMVT-TLPWEFGNLC------------NLQFLGVEGNPLEKQFLKIL-TEKSV  341 (727)
T ss_dssp             -SCCSSG-------GGGTTCSEEECCSSCCC-CCCSSTTSCT------------TCCCEECTTSCCCSHHHHHH-HHHHH
T ss_pred             -ccChhh-------cCCCCCCEEECCCCCCC-ccChhhhcCC------------CccEEeCCCCccCCCChHHH-hhcch
Confidence             678888       88999999999999997 8888888744            48999999999997777666 4432 


Q ss_pred             cCCEeEecCCcccccCCCCC
Q 039018          161 ALRSLNLFHNHFKEKFPGSI  180 (181)
Q Consensus       161 ~L~~L~L~~n~l~~~~p~~i  180 (181)
                      .+..++|++|.+++.+|..+
T Consensus       342 ~~~~l~l~~N~l~~~~p~~l  361 (727)
T 4b8c_D          342 TGLIFYLRDNRPEIPLPHER  361 (727)
T ss_dssp             HHHHHHHHHCCCCCCCCCC-
T ss_pred             hhhHHhhccCcccCcCcccc
Confidence            23357788888888888765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.73  E-value=3e-17  Score=133.04  Aligned_cols=157  Identities=24%  Similarity=0.162  Sum_probs=95.3

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK   80 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (181)
                      ||..+.  ++++.|++++|.+++..+           ..+.++++|++ ++++|.+.+..+..+..+++|++|++++|.+
T Consensus        22 ip~~l~--~~l~~L~Ls~n~l~~~~~-----------~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l   88 (570)
T 2z63_A           22 IPDNLP--FSTKNLDLSFNPLRHLGS-----------YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (570)
T ss_dssp             CCSSSC--SSCCEEECCSCCCCEECT-----------TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             cCCCcc--ccccEEEccCCccCccCh-----------hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence            555442  467888888888773222           34566777777 7777777655556677777777777777776


Q ss_pred             cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc------------cCCcccEEEccCCcc
Q 039018           81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS------------ILNLLRITDRSKNNF  147 (181)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n------------~l~~L~~l~l~~n~~  147 (181)
                      ....+..+       ..+.+|++|++++|.+++..+..++.+++|++ .+.+|            .+++|++|++++|.+
T Consensus        89 ~~~~~~~~-------~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l  161 (570)
T 2z63_A           89 QSLALGAF-------SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  161 (570)
T ss_dssp             CEECTTTT-------TTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred             CccCHhhh-------cCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc
Confidence            65555666       66666666666666665322224555555444 22222            244567777777776


Q ss_pred             ccCCChhHHHhcccC----CEeEecCCcccccCCCC
Q 039018          148 SGVLPAELVTDLVAL----RSLNLFHNHFKEKFPGS  179 (181)
Q Consensus       148 ~~~~p~~~~~~l~~L----~~L~L~~n~l~~~~p~~  179 (181)
                      ++..+..+ +.+.+|    +.+++++|.+++..|..
T Consensus       162 ~~~~~~~~-~~l~~L~~~~~~L~l~~n~l~~~~~~~  196 (570)
T 2z63_A          162 QSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGA  196 (570)
T ss_dssp             CEECGGGG-HHHHTCTTCCCEEECTTCCCCEECTTT
T ss_pred             ceecHHHc-cchhccchhhhhcccCCCCceecCHHH
Confidence            64444444 666666    66677777766544443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=6e-17  Score=117.61  Aligned_cols=130  Identities=22%  Similarity=0.283  Sum_probs=109.4

Q ss_pred             CCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhh
Q 039018           12 LRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHS   90 (181)
Q Consensus        12 L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~   90 (181)
                      -+.++.+++.++ .+|.           .+.  ++|+. ++++|.+.+..|..+..+++|++|++++|.+....+..+  
T Consensus        21 ~~~v~c~~~~l~-~ip~-----------~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~--   84 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPA-----------GIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVF--   84 (229)
T ss_dssp             TTEEECTTSCCS-SCCS-----------CCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--
T ss_pred             CCEeEccCCCcC-ccCC-----------CCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhc--
Confidence            456889998888 4554           332  67888 999999998888889999999999999999976655667  


Q ss_pred             ccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCC
Q 039018           91 FSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHN  170 (181)
Q Consensus        91 ~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n  170 (181)
                           ..+++|+.|++++|++++..+..+..            +++|++|++++|+++ .+|..+ ..+++|+.|+|++|
T Consensus        85 -----~~l~~L~~L~Ls~N~l~~l~~~~~~~------------l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~L~~N  145 (229)
T 3e6j_A           85 -----DSLTQLTVLDLGTNQLTVLPSAVFDR------------LVHLKELFMCCNKLT-ELPRGI-ERLTHLTHLALDQN  145 (229)
T ss_dssp             -----TTCTTCCEEECCSSCCCCCCTTTTTT------------CTTCCEEECCSSCCC-SCCTTG-GGCTTCSEEECCSS
T ss_pred             -----ccCCCcCEEECCCCcCCccChhHhCc------------chhhCeEeccCCccc-ccCccc-ccCCCCCEEECCCC
Confidence                 88999999999999999554555666            445999999999999 889888 99999999999999


Q ss_pred             cccccCC
Q 039018          171 HFKEKFP  177 (181)
Q Consensus       171 ~l~~~~p  177 (181)
                      .+++ +|
T Consensus       146 ~l~~-~~  151 (229)
T 3e6j_A          146 QLKS-IP  151 (229)
T ss_dssp             CCCC-CC
T ss_pred             cCCc-cC
Confidence            9994 54

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=3.1e-17  Score=118.48  Aligned_cols=135  Identities=19%  Similarity=0.201  Sum_probs=111.2

Q ss_pred             CCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCC-cccCCCCCCcEEEcCCCcccccchhHhh
Q 039018           12 LRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLP-TSFGRLREPRSISLSWANKSQEILEIFH   89 (181)
Q Consensus        12 L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~   89 (181)
                      -+.+++++|.++ .+|+           .+.  ..++. ++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+ 
T Consensus        13 ~~~l~~s~n~l~-~iP~-----------~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~-   77 (220)
T 2v70_A           13 GTTVDCSNQKLN-KIPE-----------HIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF-   77 (220)
T ss_dssp             TTEEECCSSCCS-SCCS-----------CCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTT-
T ss_pred             CCEeEeCCCCcc-cCcc-----------CCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHh-
Confidence            358999999998 4554           222  23456 899999996644 457899999999999999997777788 


Q ss_pred             hccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecC
Q 039018           90 SFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFH  169 (181)
Q Consensus        90 ~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~  169 (181)
                            ..+.+|+.|++++|.+++..+..+..+            ++|++|++++|++++..|..+ ..+++|+.|+|++
T Consensus        78 ------~~l~~L~~L~Ls~N~l~~~~~~~~~~l------------~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~  138 (220)
T 2v70_A           78 ------EGASGVNEILLTSNRLENVQHKMFKGL------------ESLKTLMLRSNRITCVGNDSF-IGLSSVRLLSLYD  138 (220)
T ss_dssp             ------TTCTTCCEEECCSSCCCCCCGGGGTTC------------SSCCEEECTTSCCCCBCTTSS-TTCTTCSEEECTT
T ss_pred             ------CCCCCCCEEECCCCccCccCHhHhcCC------------cCCCEEECCCCcCCeECHhHc-CCCccCCEEECCC
Confidence                  899999999999999996666667774            459999999999996667777 9999999999999


Q ss_pred             CcccccCCCCC
Q 039018          170 NHFKEKFPGSI  180 (181)
Q Consensus       170 n~l~~~~p~~i  180 (181)
                      |.+++..|..|
T Consensus       139 N~l~~~~~~~~  149 (220)
T 2v70_A          139 NQITTVAPGAF  149 (220)
T ss_dssp             SCCCCBCTTTT
T ss_pred             CcCCEECHHHh
Confidence            99997767765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.72  E-value=9.5e-18  Score=126.90  Aligned_cols=149  Identities=15%  Similarity=0.037  Sum_probs=93.0

Q ss_pred             CCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCccccc--
Q 039018            7 ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQE--   83 (181)
Q Consensus         7 ~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--   83 (181)
                      .++++|+.|++++|.+.+..+..-       ...+..+++|++ ++++|.+.+..+..++.+++|++|++++|.+.+.  
T Consensus       114 ~~~~~L~~L~Ls~n~i~~~~~~~~-------~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  186 (310)
T 4glp_A          114 ATGLALSSLRLRNVSWATGRSWLA-------ELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG  186 (310)
T ss_dssp             CCCBCCSSCEEESCCCSSTTSSHH-------HHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH
T ss_pred             ccCCCCCEEEeecccccchhhhhH-------HHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh
Confidence            455556666666666553332100       022345777888 8888888766677788888888888888876542  


Q ss_pred             ch--hHhhhccCCCCCCCCccEEEcccccceeecCc----hhhccccccc-ccccc-----------c---CCcccEEEc
Q 039018           84 IL--EIFHSFSRDNWTLRSLQILDIACNNLSGAIPA----CISNSSARKE-VGYTS-----------I---LNLLRITDR  142 (181)
Q Consensus        84 ~~--~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~----~~~~~~~l~~-~~~~n-----------~---l~~L~~l~l  142 (181)
                      .+  ..+       ..+++|++|++++|+++ .++.    .++.+++|++ .+.+|           .   +++|++|++
T Consensus       187 ~~~~~~~-------~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~L  258 (310)
T 4glp_A          187 LMAALCP-------HKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNL  258 (310)
T ss_dssp             HHTTSCT-------TSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEEC
T ss_pred             hhHHHhh-------hcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEEC
Confidence            11  112       46677888888888776 3333    2456666666 44444           1   246777777


Q ss_pred             cCCccccCCChhHHHhcccCCEeEecCCcccc
Q 039018          143 SKNNFSGVLPAELVTDLVALRSLNLFHNHFKE  174 (181)
Q Consensus       143 ~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~  174 (181)
                      ++|+++ .+|..+ .  ++|+.|+|++|.+++
T Consensus       259 s~N~l~-~lp~~~-~--~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          259 SFAGLE-QVPKGL-P--AKLRVLDLSSNRLNR  286 (310)
T ss_dssp             CSSCCC-SCCSCC-C--SCCSCEECCSCCCCS
T ss_pred             CCCCCC-chhhhh-c--CCCCEEECCCCcCCC
Confidence            777777 666655 2  677777777777774

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=3.1e-17  Score=116.42  Aligned_cols=133  Identities=19%  Similarity=0.260  Sum_probs=112.5

Q ss_pred             CCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccch
Q 039018            7 ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEIL   85 (181)
Q Consensus         7 ~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~   85 (181)
                      ..+++|+.|++++|.+. .+           + ++..+++|+. ++++|.+.  .+..+..+++|++|++++|.+.+..+
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l-----------~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~  105 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DL-----------T-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKI  105 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CC-----------T-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGS
T ss_pred             hhcCCccEEeccCCCcc-Ch-----------H-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccC
Confidence            45788999999999998 33           3 3778899999 99999665  34578999999999999999987777


Q ss_pred             hHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCc-cccCCChhHHHhcccCCE
Q 039018           86 EIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNN-FSGVLPAELVTDLVALRS  164 (181)
Q Consensus        86 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~-~~~~~p~~~~~~l~~L~~  164 (181)
                      ..+       ..+++|+.|++++|.+++..|..+..+            ++|++|++++|. ++ .+| .+ ..+++|+.
T Consensus       106 ~~l-------~~l~~L~~L~Ls~n~i~~~~~~~l~~l------------~~L~~L~L~~n~~i~-~~~-~l-~~l~~L~~  163 (197)
T 4ezg_A          106 PNL-------SGLTSLTLLDISHSAHDDSILTKINTL------------PKVNSIDLSYNGAIT-DIM-PL-KTLPELKS  163 (197)
T ss_dssp             CCC-------TTCTTCCEEECCSSBCBGGGHHHHTTC------------SSCCEEECCSCTBCC-CCG-GG-GGCSSCCE
T ss_pred             hhh-------cCCCCCCEEEecCCccCcHhHHHHhhC------------CCCCEEEccCCCCcc-ccH-hh-cCCCCCCE
Confidence            777       899999999999999987777878774            459999999998 66 666 56 89999999


Q ss_pred             eEecCCcccccCC
Q 039018          165 LNLFHNHFKEKFP  177 (181)
Q Consensus       165 L~L~~n~l~~~~p  177 (181)
                      |++++|.+++ ++
T Consensus       164 L~l~~n~i~~-~~  175 (197)
T 4ezg_A          164 LNIQFDGVHD-YR  175 (197)
T ss_dssp             EECTTBCCCC-CT
T ss_pred             EECCCCCCcC-hH
Confidence            9999999984 44

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.71  E-value=2e-17  Score=140.25  Aligned_cols=159  Identities=18%  Similarity=0.178  Sum_probs=113.6

Q ss_pred             CCCCCCCcCCCeeeccCccccccc-Cccccc-------------cccccCCcccccccchh-ccccccccCCCCcc--cC
Q 039018            3 PNGPENLSSLRYLDLSDNQFNSTI-PEWISR-------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTS--FG   65 (181)
Q Consensus         3 p~~~~~l~~L~~L~ls~n~i~~~~-p~~~~~-------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~--~~   65 (181)
                      |..+.++++|++|++++|.+.+.+ |..+..             +....|..++++++|++ ++++|.+.+..+..  ++
T Consensus        41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~  120 (844)
T 3j0a_A           41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR  120 (844)
T ss_dssp             SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS
T ss_pred             hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccc
Confidence            445555566666666665433333 333332             22344677899999999 99999999766655  89


Q ss_pred             CCCCCcEEEcCCCcccccch-hHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccC
Q 039018           66 RLREPRSISLSWANKSQEIL-EIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSK  144 (181)
Q Consensus        66 ~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~  144 (181)
                      .+++|++|++++|.+.+..+ ..+       +++++|+.|++++|.+++..+..+..+..          ++|+.|+++.
T Consensus       121 ~L~~L~~L~Ls~N~l~~~~~~~~~-------~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~----------~~L~~L~L~~  183 (844)
T 3j0a_A          121 NLKALTRLDLSKNQIRSLYLHPSF-------GKLNSLKSIDFSSNQIFLVCEHELEPLQG----------KTLSFFSLAA  183 (844)
T ss_dssp             SCSSCCEEEEESCCCCCCCCCGGG-------GTCSSCCEEEEESSCCCCCCSGGGHHHHH----------CSSCCCEECC
T ss_pred             ccCCCCEEECCCCcccccccchhH-------hhCCCCCEEECCCCcCCeeCHHHcccccC----------CccceEECCC
Confidence            99999999999999976544 567       89999999999999999888888876511          3477777777


Q ss_pred             CccccCCChhHHHhccc------CCEeEecCCcccccCCCC
Q 039018          145 NNFSGVLPAELVTDLVA------LRSLNLFHNHFKEKFPGS  179 (181)
Q Consensus       145 n~~~~~~p~~~~~~l~~------L~~L~L~~n~l~~~~p~~  179 (181)
                      |.+.+..|..+ +.+++      |+.|++++|.+++.+|..
T Consensus       184 n~l~~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  223 (844)
T 3j0a_A          184 NSLYSRVSVDW-GKCMNPFRNMVLEILDVSGNGWTVDITGN  223 (844)
T ss_dssp             SBSCCCCCCCC-CSSSCTTTTCCBSEEBCSSCCSSTTTTSG
T ss_pred             Cccccccccch-hhcCCccccCceeEEecCCCcCchhHHHH
Confidence            77776665544 44444      777777777777666543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.71  E-value=1.1e-16  Score=121.06  Aligned_cols=62  Identities=27%  Similarity=0.425  Sum_probs=32.3

Q ss_pred             CCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCccc
Q 039018            5 GPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKS   81 (181)
Q Consensus         5 ~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~   81 (181)
                      .+..+++|+.|++++|.+.+ ++.            +..+++|+. ++++|.+.+ + ..+..+++|++|++++|.+.
T Consensus        58 ~~~~l~~L~~L~L~~n~i~~-~~~------------~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~  120 (308)
T 1h6u_A           58 GVQYLNNLIGLELKDNQITD-LAP------------LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQIT  120 (308)
T ss_dssp             TGGGCTTCCEEECCSSCCCC-CGG------------GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCC
T ss_pred             hhhccCCCCEEEccCCcCCC-Chh------------HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCCCC
Confidence            45666777777777777762 221            344444444 555554442 2 23444455555555554443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.71  E-value=4.8e-17  Score=115.28  Aligned_cols=127  Identities=21%  Similarity=0.262  Sum_probs=99.4

Q ss_pred             CeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhc
Q 039018           13 RYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSF   91 (181)
Q Consensus        13 ~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~   91 (181)
                      +.+++++|.++ .+|+           .+.  +++++ ++++|.+. .+|..+..+++|++|++++|.+.+..+..|   
T Consensus        13 ~~l~~~~~~l~-~ip~-----------~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f---   74 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPK-----------GIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSF---   74 (193)
T ss_dssp             TEEECTTSCCS-SCCS-----------CCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTT---
T ss_pred             CEEEcCCCCCC-cCCC-----------CCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHc---
Confidence            56888888888 4554           222  46677 88888888 777888889999999999998887777777   


Q ss_pred             cCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCc
Q 039018           92 SRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNH  171 (181)
Q Consensus        92 ~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~  171 (181)
                          ..+.+|+.|++++|.+++..|..+..+            ++|++|++++|.++ .+|...|..+++|+.|++++|.
T Consensus        75 ----~~l~~L~~L~Ls~N~l~~i~~~~f~~l------------~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           75 ----SNMTQLLTLILSYNRLRCIPPRTFDGL------------KSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             ----TTCTTCCEEECCSSCCCBCCTTTTTTC------------TTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSC
T ss_pred             ----cCCCCCCEEECCCCccCEeCHHHhCCC------------CCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCC
Confidence                888999999999999886666667764            44888999999988 5565444888899999999888


Q ss_pred             ccc
Q 039018          172 FKE  174 (181)
Q Consensus       172 l~~  174 (181)
                      +..
T Consensus       138 ~~C  140 (193)
T 2wfh_A          138 LYC  140 (193)
T ss_dssp             EEC
T ss_pred             eec
Confidence            753

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.71  E-value=1.4e-17  Score=121.45  Aligned_cols=148  Identities=20%  Similarity=0.208  Sum_probs=113.8

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-cccccc-ccCCCCcccCCCCCCcEEEcCC-C
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNV-LEGKLPTSFGRLREPRSISLSW-A   78 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~-~~~~~~~~~~~l~~L~~L~l~~-n   78 (181)
                      +|. +.  +.|+.|++++|+++ .+|.          ..+.++++|+. ++++|. ++...+..+..+++|++|++++ |
T Consensus        26 ip~-~~--~~l~~L~l~~n~l~-~i~~----------~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n   91 (239)
T 2xwt_C           26 IPS-LP--PSTQTLKLIETHLR-TIPS----------HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR   91 (239)
T ss_dssp             CCC-CC--TTCCEEEEESCCCS-EECT----------TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET
T ss_pred             cCC-CC--CcccEEEEeCCcce-EECH----------HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC
Confidence            565 33  48999999999998 3332          35788999999 999997 8755666889999999999998 9


Q ss_pred             cccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccc---c-ccccc------------cCCccc-EEE
Q 039018           79 NKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARK---E-VGYTS------------ILNLLR-ITD  141 (181)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~---~-~~~~n------------~l~~L~-~l~  141 (181)
                      .+....+..|       ..+++|+.|++++|+++ .+|. +..+++|+   + .+.+|            .+++|+ +++
T Consensus        92 ~l~~i~~~~f-------~~l~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~  162 (239)
T 2xwt_C           92 NLTYIDPDAL-------KELPLLKFLGIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK  162 (239)
T ss_dssp             TCCEECTTSE-------ECCTTCCEEEEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEE
T ss_pred             CeeEcCHHHh-------CCCCCCCEEeCCCCCCc-cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEE
Confidence            9886666777       88999999999999998 5777 77777766   4 33332            456677 888


Q ss_pred             ccCCccccCCChhHHHhcccCCEeEecCCc-ccc
Q 039018          142 RSKNNFSGVLPAELVTDLVALRSLNLFHNH-FKE  174 (181)
Q Consensus       142 l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~-l~~  174 (181)
                      +++|.++ .+|...|.. ++|+.|++++|. +++
T Consensus       163 l~~n~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~  194 (239)
T 2xwt_C          163 LYNNGFT-SVQGYAFNG-TKLDAVYLNKNKYLTV  194 (239)
T ss_dssp             CCSCCCC-EECTTTTTT-CEEEEEECTTCTTCCE
T ss_pred             cCCCCCc-ccCHhhcCC-CCCCEEEcCCCCCccc
Confidence            8888887 666655344 778888888884 773

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.71  E-value=2e-17  Score=133.64  Aligned_cols=153  Identities=18%  Similarity=0.147  Sum_probs=101.7

Q ss_pred             CCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCccc
Q 039018            3 PNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKS   81 (181)
Q Consensus         3 p~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~   81 (181)
                      |..+.++++|++|++++|.+.+..|           ..++++++|++ ++++|.+.+..+..++.+++|++|++++|.+.
T Consensus        43 ~~~~~~l~~L~~L~Ls~n~i~~~~~-----------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  111 (549)
T 2z81_A           43 HGDLRACANLQVLILKSSRINTIEG-----------DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ  111 (549)
T ss_dssp             SSTTSSCTTCCEEECTTSCCCEECT-----------TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCS
T ss_pred             hhhhhcCCcccEEECCCCCcCccCh-----------hhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCccc
Confidence            5678999999999999999985444           34566777777 77777777555555777777777777777765


Q ss_pred             c-cchhHhhhccCCCCCCCCccEEEcccccceeecC-chhhccccccc-ccccc-----------cCCcccEEEccCCcc
Q 039018           82 Q-EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIP-ACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNF  147 (181)
Q Consensus        82 ~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p-~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~  147 (181)
                      + ..|..+       ..+++|+.|++++|.+.+.+| ..+..+++|++ .+.+|           .+++|+++++++|.+
T Consensus       112 ~~~~~~~~-------~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  184 (549)
T 2z81_A          112 TLGVTSLF-------PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES  184 (549)
T ss_dssp             SSCSSCSC-------TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred             ccchhhhh-------hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence            4 234445       566666666666665322443 45666666666 33333           345577777777776


Q ss_pred             ccCCChhHHHhcccCCEeEecCCcccc
Q 039018          148 SGVLPAELVTDLVALRSLNLFHNHFKE  174 (181)
Q Consensus       148 ~~~~p~~~~~~l~~L~~L~L~~n~l~~  174 (181)
                      . .+|..+++.+++|++|++++|.+++
T Consensus       185 ~-~~~~~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          185 A-FLLEIFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             T-THHHHHHHSTTTBSEEEEESCBCTT
T ss_pred             c-ccchhhHhhcccccEEEccCCcccc
Confidence            5 5565554567777777777777774

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.71  E-value=7.4e-17  Score=114.12  Aligned_cols=120  Identities=21%  Similarity=0.263  Sum_probs=102.4

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK   80 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (181)
                      ||..+..  .|+.|++++|.+.+..++          ..++.+++|+. ++++|.+++..|..+..+++|++|++++|.+
T Consensus        23 ip~~~~~--~l~~L~l~~n~i~~~~~~----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l   90 (192)
T 1w8a_A           23 IPRDIPL--HTTELLLNDNELGRISSD----------GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             CCSCCCT--TCSEEECCSCCCCSBCCS----------CSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred             CccCCCC--CCCEEECCCCcCCccCCc----------cccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence            6666643  899999999999833332          13788999999 9999999988899999999999999999999


Q ss_pred             cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCC
Q 039018           81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLP  152 (181)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p  152 (181)
                      .+..+..+       ..+++|+.|++++|++++..|..+..++            +|+++++++|.+.+..+
T Consensus        91 ~~~~~~~~-------~~l~~L~~L~L~~N~l~~~~~~~~~~l~------------~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           91 KEISNKMF-------LGLHQLKTLNLYDNQISCVMPGSFEHLN------------SLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CEECSSSS-------TTCTTCCEEECCSSCCCEECTTSSTTCT------------TCCEEECTTCCBCCSGG
T ss_pred             CccCHHHh-------cCCCCCCEEECCCCcCCeeCHHHhhcCC------------CCCEEEeCCCCccCcCc
Confidence            98777778       8999999999999999988888888744            49999999999986554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.71  E-value=8.2e-17  Score=109.21  Aligned_cols=129  Identities=16%  Similarity=0.143  Sum_probs=106.1

Q ss_pred             CCcCCCeeeccCcccc-cccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccch
Q 039018            8 NLSSLRYLDLSDNQFN-STIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEIL   85 (181)
Q Consensus         8 ~l~~L~~L~ls~n~i~-~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~   85 (181)
                      ..++|+.|++++|.+. +.+|           ..+..+++|+. ++++|.+.+.  ..++.+++|++|++++|.+.+..|
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~-----------~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~   81 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLE-----------GLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLE   81 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCC-----------SCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTH
T ss_pred             CCccCeEEEccCCcCChhHHH-----------HHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHH
Confidence            3478999999999997 5444           44678899999 9999999854  778999999999999999987788


Q ss_pred             hHhhhccCCCCCCCCccEEEcccccceee-cCchhhcccccccccccccCCcccEEEccCCccccCCCh---hHHHhccc
Q 039018           86 EIFHSFSRDNWTLRSLQILDIACNNLSGA-IPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPA---ELVTDLVA  161 (181)
Q Consensus        86 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~---~~~~~l~~  161 (181)
                      ..+       ..+++|+.|++++|.+++. .+..+..            +++|++|++++|.+++ ++.   ..+..+++
T Consensus        82 ~~~-------~~l~~L~~L~ls~N~i~~~~~~~~~~~------------l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~  141 (149)
T 2je0_A           82 VLA-------EKCPNLTHLNLSGNKIKDLSTIEPLKK------------LENLKSLDLFNCEVTN-LNDYRENVFKLLPQ  141 (149)
T ss_dssp             HHH-------HHCTTCCEEECTTSCCCSHHHHGGGGG------------CTTCCEEECTTCGGGG-STTHHHHHHHHCTT
T ss_pred             HHh-------hhCCCCCEEECCCCcCCChHHHHHHhh------------CCCCCEEeCcCCcccc-hHHHHHHHHHHCCC
Confidence            887       7799999999999999842 2366776            4459999999999995 454   34499999


Q ss_pred             CCEeEecC
Q 039018          162 LRSLNLFH  169 (181)
Q Consensus       162 L~~L~L~~  169 (181)
                      |+.|++++
T Consensus       142 L~~L~l~d  149 (149)
T 2je0_A          142 LTYLDGYD  149 (149)
T ss_dssp             CCEETTBC
T ss_pred             cccccCCC
Confidence            99999863

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.70  E-value=3.9e-17  Score=131.30  Aligned_cols=146  Identities=20%  Similarity=0.280  Sum_probs=86.7

Q ss_pred             CCCcCCCeeeccCcccccccCccccc-------------ccc--ccCCcccccccchh-ccccccccCCCCcc-cCCCCC
Q 039018            7 ENLSSLRYLDLSDNQFNSTIPEWISR-------------INC--TISSGLGNLTSLKH-SISYNVLEGKLPTS-FGRLRE   69 (181)
Q Consensus         7 ~~l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~--~l~~~l~~l~~L~~-~l~~n~~~~~~~~~-~~~l~~   69 (181)
                      ..+++|+.|++++|.+.+..|..+..             +.+  .+|..++.+++|+. ++++|.+.+.+|.. +..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            56778888888888887555543321             000  12223344444444 44444444323322 344444


Q ss_pred             CcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCcccc
Q 039018           70 PRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSG  149 (181)
Q Consensus        70 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~  149 (181)
                      |+.|++++|.+.+..|..+       .  .+|+.|++++|+++ .+|..+..            +++|++|++++|+++ 
T Consensus       401 L~~L~Ls~N~l~~~~~~~l-------~--~~L~~L~Ls~N~l~-~ip~~~~~------------l~~L~~L~L~~N~l~-  457 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCL-------P--PRIKVLDLHSNKIK-SIPKQVVK------------LEALQELNVASNQLK-  457 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSC-------C--TTCCEEECCSSCCC-CCCGGGGG------------CTTCCEEECCSSCCC-
T ss_pred             CCEEECcCCCCCcchhhhh-------c--ccCCEEECCCCccc-ccchhhhc------------CCCCCEEECCCCcCC-
Confidence            4444444444443333322       1  45555555555555 55554444            566999999999999 


Q ss_pred             CCChhHHHhcccCCEeEecCCccccc
Q 039018          150 VLPAELVTDLVALRSLNLFHNHFKEK  175 (181)
Q Consensus       150 ~~p~~~~~~l~~L~~L~L~~n~l~~~  175 (181)
                      .+|...+..+++|+.|++++|+++++
T Consensus       458 ~l~~~~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          458 SVPDGIFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             ccCHHHhccCCcccEEECcCCCCccc
Confidence            78876348999999999999999865

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.70  E-value=2.3e-17  Score=124.82  Aligned_cols=153  Identities=19%  Similarity=0.145  Sum_probs=100.0

Q ss_pred             CcCCCeeeccCcccccccCccccccccccCCcc-cccccchh-ccccccccCCCC----cccCCCCCCcEEEcCCCcccc
Q 039018            9 LSSLRYLDLSDNQFNSTIPEWISRINCTISSGL-GNLTSLKH-SISYNVLEGKLP----TSFGRLREPRSISLSWANKSQ   82 (181)
Q Consensus         9 l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l-~~l~~L~~-~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~~~~   82 (181)
                      +++|+.|++++|.+.+..|..+          + ..+++|+. ++++|.+.+..+    ..+..+++|++|++++|.+.+
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~----------~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  159 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLP----------LEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA  159 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCS----------SSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC
T ss_pred             cCceeEEEeeCCEeccchhhhh----------hhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch
Confidence            3457777888777775555321          1 56777777 777777775443    233457777888887777766


Q ss_pred             cchhHhhhccCCCCCCCCccEEEcccccceee--c--Cchhhccccccc-ccccc--------------cCCcccEEEcc
Q 039018           83 EILEIFHSFSRDNWTLRSLQILDIACNNLSGA--I--PACISNSSARKE-VGYTS--------------ILNLLRITDRS  143 (181)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~--~--p~~~~~~~~l~~-~~~~n--------------~l~~L~~l~l~  143 (181)
                      ..+..+       ..+++|+.|++++|++.+.  +  +..++.+++|++ .+.+|              .+++|++|+++
T Consensus       160 ~~~~~~-------~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls  232 (310)
T 4glp_A          160 FSCEQV-------RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLS  232 (310)
T ss_dssp             CCTTSC-------CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECT
T ss_pred             hhHHHh-------ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECC
Confidence            666666       7777788888887776531  2  222356666777 44444              23667778888


Q ss_pred             CCccccCCChhHHHhc---ccCCEeEecCCcccccCCCCC
Q 039018          144 KNNFSGVLPAELVTDL---VALRSLNLFHNHFKEKFPGSI  180 (181)
Q Consensus       144 ~n~~~~~~p~~~~~~l---~~L~~L~L~~n~l~~~~p~~i  180 (181)
                      +|++++..|+.+ ..+   ++|+.|+|++|.++ .+|..+
T Consensus       233 ~N~l~~~~p~~~-~~~~~~~~L~~L~Ls~N~l~-~lp~~~  270 (310)
T 4glp_A          233 HNSLRATVNPSA-PRCMWSSALNSLNLSFAGLE-QVPKGL  270 (310)
T ss_dssp             TSCCCCCCCSCC-SSCCCCTTCCCEECCSSCCC-SCCSCC
T ss_pred             CCCCCccchhhH-HhccCcCcCCEEECCCCCCC-chhhhh
Confidence            887775556555 554   57778888888777 667654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.70  E-value=9.3e-17  Score=121.50  Aligned_cols=140  Identities=19%  Similarity=0.230  Sum_probs=107.7

Q ss_pred             CCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccc
Q 039018            6 PENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEI   84 (181)
Q Consensus         6 ~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~   84 (181)
                      +.++++|+.|++++|.+.+ ++            .+..+++|+. ++++|.+.+ ++. +..+++|++|++++|.+.+..
T Consensus        81 ~~~l~~L~~L~L~~n~l~~-~~------------~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~  145 (308)
T 1h6u_A           81 LKNLTKITELELSGNPLKN-VS------------AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNIS  145 (308)
T ss_dssp             GTTCCSCCEEECCSCCCSC-CG------------GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred             HccCCCCCEEEccCCcCCC-ch------------hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCc
Confidence            7888999999999999883 23            3677888888 888888874 443 788888888888888877543


Q ss_pred             hhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc---------cCCcccEEEccCCccccCCChh
Q 039018           85 LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS---------ILNLLRITDRSKNNFSGVLPAE  154 (181)
Q Consensus        85 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n---------~l~~L~~l~l~~n~~~~~~p~~  154 (181)
                      +  +       ..+++|+.|++++|.++ .++. +..+++|++ .+.+|         .+++|++|++++|+++ .++ .
T Consensus       146 ~--l-------~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~-~~~-~  212 (308)
T 1h6u_A          146 P--L-------AGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQIS-DVS-P  212 (308)
T ss_dssp             G--G-------GGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCC-BCG-G
T ss_pred             c--c-------cCCCCccEEEccCCcCC-CChh-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccC-ccc-c
Confidence            3  5       67888888888888887 3444 777777777 44444         5667899999999998 444 3


Q ss_pred             HHHhcccCCEeEecCCcccc
Q 039018          155 LVTDLVALRSLNLFHNHFKE  174 (181)
Q Consensus       155 ~~~~l~~L~~L~L~~n~l~~  174 (181)
                      + ..+++|+.|++++|.+++
T Consensus       213 l-~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          213 L-ANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             G-TTCTTCCEEEEEEEEEEC
T ss_pred             c-cCCCCCCEEEccCCeeec
Confidence            5 889999999999999874

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.70  E-value=4.4e-17  Score=123.67  Aligned_cols=151  Identities=17%  Similarity=0.158  Sum_probs=103.6

Q ss_pred             CCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccc-------------------cCCCCcc
Q 039018            4 NGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVL-------------------EGKLPTS   63 (181)
Q Consensus         4 ~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~-------------------~~~~~~~   63 (181)
                      ..+.++++|+.|++++|.+.+..+             +..+++|++ ++++|.+                   .+..+  
T Consensus        52 ~~~~~l~~L~~L~Ls~n~l~~~~~-------------~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~--  116 (317)
T 3o53_A           52 ADLAPFTKLELLNLSSNVLYETLD-------------LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSC--  116 (317)
T ss_dssp             HHHTTCTTCCEEECTTSCCEEEEE-------------ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEE--
T ss_pred             HHhhCCCcCCEEECCCCcCCcchh-------------hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCc--
Confidence            356778888888888888874322             334444444 4444444                   32211  


Q ss_pred             cCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhh-ccccccc-ccccc---------
Q 039018           64 FGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACIS-NSSARKE-VGYTS---------  132 (181)
Q Consensus        64 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~-~~~~l~~-~~~~n---------  132 (181)
                       ..+++|++|++++|.+.+..+..+       ..+++|+.|++++|.+++..+..+. .+++|++ .+.+|         
T Consensus       117 -~~~~~L~~L~l~~N~l~~~~~~~~-------~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  188 (317)
T 3o53_A          117 -SRGQGKKNIYLANNKITMLRDLDE-------GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV  188 (317)
T ss_dssp             -CCCSSCEEEECCSSCCCSGGGBCT-------GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC
T ss_pred             -cccCCCCEEECCCCCCCCccchhh-------hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc
Confidence             224566777777777665555555       6778888888888888866566553 6777777 55555         


Q ss_pred             cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCCC
Q 039018          133 ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI  180 (181)
Q Consensus       133 ~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i  180 (181)
                      .+++|++|++++|+++ .+|..+ ..+++|+.|++++|.++ .+|..+
T Consensus       189 ~l~~L~~L~Ls~N~l~-~l~~~~-~~l~~L~~L~L~~N~l~-~l~~~~  233 (317)
T 3o53_A          189 VFAKLKTLDLSSNKLA-FMGPEF-QSAAGVTWISLRNNKLV-LIEKAL  233 (317)
T ss_dssp             CCTTCCEEECCSSCCC-EECGGG-GGGTTCSEEECTTSCCC-EECTTC
T ss_pred             ccccCCEEECCCCcCC-cchhhh-cccCcccEEECcCCccc-chhhHh
Confidence            4778899999999998 556666 88899999999999988 677654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.70  E-value=1.2e-16  Score=129.89  Aligned_cols=128  Identities=19%  Similarity=0.264  Sum_probs=107.0

Q ss_pred             cccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccc--cchhHhhhccCCCCCCCCccEEEcccccceeecCc-
Q 039018           42 GNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQ--EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPA-  117 (181)
Q Consensus        42 ~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~-  117 (181)
                      ..+++|+. ++++|.+.+..|..+..+++|++|++++|.+.+  ..|..+       ..+++|+.|++++|.+++.+|. 
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-------~~l~~L~~L~l~~N~l~~~~~~~  422 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT-------KNMSSLETLDVSLNSLNSHAYDR  422 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTT-------TTCTTCCEEECTTSCCBSCCSSC
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhh-------cCCCCCCEEECCCCcCCCccChh
Confidence            56788888 999999998888889999999999999999875  345667       8899999999999999865665 


Q ss_pred             hhhccccccc-ccccccC---------CcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCC
Q 039018          118 CISNSSARKE-VGYTSIL---------NLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGS  179 (181)
Q Consensus       118 ~~~~~~~l~~-~~~~n~l---------~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~  179 (181)
                      .+..+++|++ .+.+|.+         ++|++|++++|+++ .+|..+ ..+++|+.|+|++|.++ .+|..
T Consensus       423 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~-~~l~~L~~L~L~~N~l~-~l~~~  491 (562)
T 3a79_B          423 TCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDV-THLQALQELNVASNQLK-SVPDG  491 (562)
T ss_dssp             CCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTT-TSSCCCSEEECCSSCCC-CCCTT
T ss_pred             hhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhh-cCCCCCCEEECCCCCCC-CCCHH
Confidence            4777888888 5666632         68999999999998 889888 58999999999999999 67765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.69  E-value=1.2e-16  Score=111.53  Aligned_cols=132  Identities=20%  Similarity=0.255  Sum_probs=98.3

Q ss_pred             CCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhh
Q 039018           12 LRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHS   90 (181)
Q Consensus        12 L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~   90 (181)
                      .+.+++++++++ .+|.           .+  .++++. ++++|.+.+..+..+..+++|++|++++|.+.+..+..+  
T Consensus         9 ~~~l~~~~~~l~-~~p~-----------~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--   72 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPT-----------GI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF--   72 (177)
T ss_dssp             TTEEECCSSCCS-SCCT-----------TC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT--
T ss_pred             CCEEEecCCCCc-cCCC-----------CC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHc--
Confidence            467888888887 4443           22  246777 888888885555567888899999999888876665666  


Q ss_pred             ccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCC
Q 039018           91 FSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHN  170 (181)
Q Consensus        91 ~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n  170 (181)
                           ..+.+|+.|++++|.+++..+..+..            +++|++|++++|.++ .+|..++..+++|+.|++++|
T Consensus        73 -----~~l~~L~~L~l~~N~l~~~~~~~~~~------------l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           73 -----DKLTKLTILYLHENKLQSLPNGVFDK------------LTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             -----TTCTTCCEEECCSSCCCCCCTTTTTT------------CTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSS
T ss_pred             -----cCCCccCEEECCCCCccccCHHHhhC------------CcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCC
Confidence                 78889999999999888444445565            344888999999888 556554478888999999999


Q ss_pred             cccccCC
Q 039018          171 HFKEKFP  177 (181)
Q Consensus       171 ~l~~~~p  177 (181)
                      .+++..|
T Consensus       135 ~~~~~~~  141 (177)
T 2o6r_A          135 PWDCSCP  141 (177)
T ss_dssp             CBCCCHH
T ss_pred             CeeccCc
Confidence            8876543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.69  E-value=1.5e-16  Score=122.88  Aligned_cols=141  Identities=23%  Similarity=0.211  Sum_probs=114.8

Q ss_pred             CCC-CCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccc
Q 039018            5 GPE-NLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQ   82 (181)
Q Consensus         5 ~~~-~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~   82 (181)
                      .+. ++++|+.|++++|+|.+..+           ..+..+++|+. ++++|.+....+..+..+++|++|++++|.+..
T Consensus        58 ~~~~~l~~L~~L~L~~N~i~~i~~-----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~  126 (361)
T 2xot_A           58 WTPTRLTNLHSLLLSHNHLNFISS-----------EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV  126 (361)
T ss_dssp             SSSSCCTTCCEEECCSSCCCEECT-----------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             hhhhcccccCEEECCCCcCCccCh-----------hhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccE
Confidence            344 89999999999999983222           45788999999 999999997777779999999999999999998


Q ss_pred             cchhHhhhccCCCCCCCCccEEEcccccceeecCchh-hcccccccccccccCCcccEEEccCCccccCCChhHHHhccc
Q 039018           83 EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI-SNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVA  161 (181)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~-~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~  161 (181)
                      ..+..|       ..+.+|+.|++++|+++ .+|..+ ..+..         +++|+.|++++|+++ .+|...+..++.
T Consensus       127 ~~~~~~-------~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~---------l~~L~~L~L~~N~l~-~l~~~~~~~l~~  188 (361)
T 2xot_A          127 VDRNAF-------EDMAQLQKLYLSQNQIS-RFPVELIKDGNK---------LPKLMLLDLSSNKLK-KLPLTDLQKLPA  188 (361)
T ss_dssp             ECTTTT-------TTCTTCCEEECCSSCCC-SCCGGGTC-------------CTTCCEEECCSSCCC-CCCHHHHHHSCH
T ss_pred             ECHHHh-------CCcccCCEEECCCCcCC-eeCHHHhcCccc---------CCcCCEEECCCCCCC-ccCHHHhhhccH
Confidence            778888       89999999999999998 566543 21111         556999999999999 667554488887


Q ss_pred             --CCEeEecCCcccc
Q 039018          162 --LRSLNLFHNHFKE  174 (181)
Q Consensus       162 --L~~L~L~~n~l~~  174 (181)
                        ++.|+|++|.+..
T Consensus       189 ~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          189 WVKNGLYLHNNPLEC  203 (361)
T ss_dssp             HHHTTEECCSSCEEC
T ss_pred             hhcceEEecCCCccC
Confidence              4899999998863

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.69  E-value=1.7e-16  Score=119.16  Aligned_cols=139  Identities=26%  Similarity=0.262  Sum_probs=77.9

Q ss_pred             CCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccc
Q 039018            6 PENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEI   84 (181)
Q Consensus         6 ~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~   84 (181)
                      +..+++|+.|++++|.+.+            ++. +..+++|+. ++++|.+.+ ++ .+..+++|++|++++|.+... 
T Consensus        64 ~~~l~~L~~L~L~~n~l~~------------~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~-  127 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGNKLTD------------IKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI-  127 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCC------------CGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC-
T ss_pred             HhcCCCCCEEEccCCccCC------------Ccc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC-
Confidence            4455555556666555552            112 455556666 666666553 22 355666666666666665532 


Q ss_pred             hhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc---------cCCcccEEEccCCccccCCChh
Q 039018           85 LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS---------ILNLLRITDRSKNNFSGVLPAE  154 (181)
Q Consensus        85 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n---------~l~~L~~l~l~~n~~~~~~p~~  154 (181)
                       ..+       ..+++|+.|++++|++++ + ..+..+++|++ .+.+|         .+++|++|++++|.++ .++ .
T Consensus       128 -~~l-------~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~-~l~-~  195 (291)
T 1h6t_A          128 -NGL-------VHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLR-A  195 (291)
T ss_dssp             -GGG-------GGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-BCG-G
T ss_pred             -hhh-------cCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCC-CCh-h
Confidence             234       555666666666666653 2 34555555555 33333         3455667777777666 344 2


Q ss_pred             HHHhcccCCEeEecCCccc
Q 039018          155 LVTDLVALRSLNLFHNHFK  173 (181)
Q Consensus       155 ~~~~l~~L~~L~L~~n~l~  173 (181)
                      + ..+++|+.|++++|.++
T Consensus       196 l-~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          196 L-AGLKNLDVLELFSQECL  213 (291)
T ss_dssp             G-TTCTTCSEEEEEEEEEE
T ss_pred             h-ccCCCCCEEECcCCccc
Confidence            4 66667777777776665

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.68  E-value=1.2e-16  Score=129.72  Aligned_cols=147  Identities=18%  Similarity=0.280  Sum_probs=88.3

Q ss_pred             CCCcCCCeeeccCcccccccCccccc-------------ccc--ccCCcccccccchh-ccccccccCCCCc-ccCCCCC
Q 039018            7 ENLSSLRYLDLSDNQFNSTIPEWISR-------------INC--TISSGLGNLTSLKH-SISYNVLEGKLPT-SFGRLRE   69 (181)
Q Consensus         7 ~~l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~--~l~~~l~~l~~L~~-~l~~n~~~~~~~~-~~~~l~~   69 (181)
                      ..+++|+.|++++|.+.+..|..+..             +.+  .+|..+.++++|+. ++++|.+.+.+|. .+..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            56677778888888777545543321             000  11223444455555 5555555542332 2444555


Q ss_pred             CcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCcccc
Q 039018           70 PRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSG  149 (181)
Q Consensus        70 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~  149 (181)
                      |++|++++|.+.+..|..+       .  .+|+.|++++|+++ .+|..+..            +++|++|++++|+++ 
T Consensus       430 L~~L~l~~n~l~~~~~~~l-------~--~~L~~L~L~~N~l~-~ip~~~~~------------l~~L~~L~L~~N~l~-  486 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCL-------P--PKVKVLDLHNNRIM-SIPKDVTH------------LQALQELNVASNQLK-  486 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSC-------C--TTCSEEECCSSCCC-CCCTTTTS------------SCCCSEEECCSSCCC-
T ss_pred             CCEEECCCCCCCcchhhhh-------c--CcCCEEECCCCcCc-ccChhhcC------------CCCCCEEECCCCCCC-
Confidence            5555555555443333222       1  45566666666555 55554444            566999999999999 


Q ss_pred             CCChhHHHhcccCCEeEecCCcccccC
Q 039018          150 VLPAELVTDLVALRSLNLFHNHFKEKF  176 (181)
Q Consensus       150 ~~p~~~~~~l~~L~~L~L~~n~l~~~~  176 (181)
                      .+|...+..+++|+.|++++|++.++.
T Consensus       487 ~l~~~~~~~l~~L~~L~l~~N~~~c~c  513 (562)
T 3a79_B          487 SVPDGVFDRLTSLQYIWLHDNPWDCTC  513 (562)
T ss_dssp             CCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred             CCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence            788773399999999999999998754

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.67  E-value=4.1e-16  Score=127.45  Aligned_cols=153  Identities=23%  Similarity=0.209  Sum_probs=74.4

Q ss_pred             CCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCccc-
Q 039018            4 NGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKS-   81 (181)
Q Consensus         4 ~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~-   81 (181)
                      ..+..++.|+.++++++......+.          ..+..+..++. +++.|.+.+..+..+..+++++.|++++|.+. 
T Consensus       414 ~~~~~l~~L~~l~l~~~~~~~~~~~----------~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~  483 (635)
T 4g8a_A          414 SNFLGLEQLEHLDFQHSNLKQMSEF----------SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE  483 (635)
T ss_dssp             SCCTTCTTCCEEECTTSEEESTTSS----------CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred             ccccccccccchhhhhccccccccc----------cccccccccccccccccccccccccccccchhhhhhhhhhccccc
Confidence            3444555555666555554432222          22334444444 55555555444444445555555555554432 


Q ss_pred             ccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcccEEEccCCcccc
Q 039018           82 QEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFSG  149 (181)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~~  149 (181)
                      ...|..+       ..+++|+.|++++|++++..|..+..+++|++ .+.+|           .+++|++|++++|++++
T Consensus       484 ~~~~~~~-------~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~  556 (635)
T 4g8a_A          484 NFLPDIF-------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT  556 (635)
T ss_dssp             GEECSCC-------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred             ccCchhh-------hhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence            2233334       44555555555555555444444444333222 11111           13446666666666665


Q ss_pred             CCChhHHHhc-ccCCEeEecCCcccc
Q 039018          150 VLPAELVTDL-VALRSLNLFHNHFKE  174 (181)
Q Consensus       150 ~~p~~~~~~l-~~L~~L~L~~n~l~~  174 (181)
                      ..|+.+ ..+ ++|+.|+|++|+++.
T Consensus       557 ~~~~~l-~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          557 SKKQEL-QHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             CCSSCT-TCCCTTCCEEECTTCCBCC
T ss_pred             CCHHHH-HhhhCcCCEEEeeCCCCcc
Confidence            555544 555 456666666666653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.67  E-value=1.5e-16  Score=110.93  Aligned_cols=133  Identities=18%  Similarity=0.141  Sum_probs=109.3

Q ss_pred             CCCCCcCCCeeeccCcccccccCccccccccccCCcccccc-cchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccc
Q 039018            5 GPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLT-SLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQ   82 (181)
Q Consensus         5 ~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~-~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~   82 (181)
                      .+.++.+|+.|++++|.++ .+|.            +..+. +|+. ++++|.+.+.  ..+..+++|++|++++|.+.+
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~------------~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~   78 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIEN------------LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR   78 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCC------------GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHH------------hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc
Confidence            3567889999999999998 3332            44454 8999 9999999954  678999999999999999986


Q ss_pred             cchhHhhhccCCCCCCCCccEEEcccccceeecCc--hhhcccccccccccccCCcccEEEccCCccccCCChh---HHH
Q 039018           83 EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPA--CISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAE---LVT  157 (181)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~--~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~---~~~  157 (181)
                      ..+..+       ..+++|+.|++++|.++ .+|.  .+..            +++|+++++++|.++ .+|..   ++.
T Consensus        79 ~~~~~~-------~~l~~L~~L~L~~N~i~-~~~~~~~l~~------------l~~L~~L~l~~N~i~-~~~~~~~~~~~  137 (176)
T 1a9n_A           79 IGEGLD-------QALPDLTELILTNNSLV-ELGDLDPLAS------------LKSLTYLCILRNPVT-NKKHYRLYVIY  137 (176)
T ss_dssp             ECSCHH-------HHCTTCCEEECCSCCCC-CGGGGGGGGG------------CTTCCEEECCSSGGG-GSTTHHHHHHH
T ss_pred             cCcchh-------hcCCCCCEEECCCCcCC-cchhhHhhhc------------CCCCCEEEecCCCCC-CcHhHHHHHHH
Confidence            655666       78899999999999997 6676  5666            455999999999998 67765   349


Q ss_pred             hcccCCEeEecCCccc
Q 039018          158 DLVALRSLNLFHNHFK  173 (181)
Q Consensus       158 ~l~~L~~L~L~~n~l~  173 (181)
                      .+++|+.|+++.|...
T Consensus       138 ~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          138 KVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             HCTTCSEETTEECCHH
T ss_pred             HCCccceeCCCcCCHH
Confidence            9999999999998764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.66  E-value=6.3e-16  Score=118.27  Aligned_cols=121  Identities=20%  Similarity=0.172  Sum_probs=67.4

Q ss_pred             ccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchh
Q 039018           41 LGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI  119 (181)
Q Consensus        41 l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~  119 (181)
                      +..+++|+. ++++|.+.+.. . +..+++|++|++++|.+....+  +       ..+++|+.|++++|.+++ + +.+
T Consensus       195 ~~~l~~L~~L~l~~n~l~~~~-~-~~~~~~L~~L~l~~n~l~~~~~--~-------~~l~~L~~L~l~~n~l~~-~-~~~  261 (347)
T 4fmz_A          195 LASLTSLHYFTAYVNQITDIT-P-VANMTRLNSLKIGNNKITDLSP--L-------ANLSQLTWLEIGTNQISD-I-NAV  261 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG-G-GGGCTTCCEEECCSSCCCCCGG--G-------TTCTTCCEEECCSSCCCC-C-GGG
T ss_pred             ccCCCccceeecccCCCCCCc-h-hhcCCcCCEEEccCCccCCCcc--h-------hcCCCCCEEECCCCccCC-C-hhH
Confidence            334444444 45555444221 1 4455555555555555543222  3       555566666666665542 2 335


Q ss_pred             hccccccc-ccccc---------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCccccc
Q 039018          120 SNSSARKE-VGYTS---------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEK  175 (181)
Q Consensus       120 ~~~~~l~~-~~~~n---------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~  175 (181)
                      ..+++|++ .+.+|         .+++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.
T Consensus       262 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~  326 (347)
T 4fmz_A          262 KDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVI-GGLTNLTTLFLSQNHITDI  326 (347)
T ss_dssp             TTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHH-HTCTTCSEEECCSSSCCCC
T ss_pred             hcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHh-hccccCCEEEccCCccccc
Confidence            55555555 33333         45667777777777775555555 7777777777777777744

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.65  E-value=6.2e-16  Score=116.12  Aligned_cols=141  Identities=18%  Similarity=0.240  Sum_probs=115.8

Q ss_pred             CCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccch
Q 039018            7 ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEIL   85 (181)
Q Consensus         7 ~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~   85 (181)
                      ..+++|+.|++++|.+. .++            ++..+++|+. ++++|.+.+ ++. +..+++|++|++++|.+.. .+
T Consensus        43 ~~l~~L~~L~l~~~~i~-~~~------------~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~  106 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIK-SVQ------------GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LS  106 (291)
T ss_dssp             HHHHTCCEEECTTSCCC-CCT------------TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GG
T ss_pred             hhcCcccEEEccCCCcc-cCh------------hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Ch
Confidence            45778999999999998 223            3778899999 999999995 444 8999999999999999875 33


Q ss_pred             hHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc---------cCCcccEEEccCCccccCCChhH
Q 039018           86 EIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS---------ILNLLRITDRSKNNFSGVLPAEL  155 (181)
Q Consensus        86 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n---------~l~~L~~l~l~~n~~~~~~p~~~  155 (181)
                       .+       ..+++|+.|++++|++++ + ..+..+++|++ .+.+|         .+++|++|++++|.+++ ++. +
T Consensus       107 -~l-------~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~-~~~-l  174 (291)
T 1h6t_A          107 -SL-------KDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD-IVP-L  174 (291)
T ss_dssp             -GG-------TTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-CGG-G
T ss_pred             -hh-------ccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCcccc-chh-h
Confidence             36       899999999999999984 4 56888888888 55555         67789999999999984 444 5


Q ss_pred             HHhcccCCEeEecCCcccccCC
Q 039018          156 VTDLVALRSLNLFHNHFKEKFP  177 (181)
Q Consensus       156 ~~~l~~L~~L~L~~n~l~~~~p  177 (181)
                       ..+++|+.|++++|.++ .+|
T Consensus       175 -~~l~~L~~L~L~~N~i~-~l~  194 (291)
T 1h6t_A          175 -AGLTKLQNLYLSKNHIS-DLR  194 (291)
T ss_dssp             -TTCTTCCEEECCSSCCC-BCG
T ss_pred             -cCCCccCEEECCCCcCC-CCh
Confidence             88999999999999998 454

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.64  E-value=1.9e-15  Score=123.86  Aligned_cols=142  Identities=26%  Similarity=0.267  Sum_probs=102.3

Q ss_pred             CCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCccccc
Q 039018            5 GPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQE   83 (181)
Q Consensus         5 ~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~   83 (181)
                      .+..+++|+.|+|++|.+.+ ++           . +..+++|+. ++++|.+.+ ++ .+..+++|+.|++++|.+...
T Consensus        60 ~l~~l~~L~~L~Ls~N~l~~-~~-----------~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l  124 (605)
T 1m9s_A           60 GIQYLPNVTKLFLNGNKLTD-IK-----------P-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI  124 (605)
T ss_dssp             TGGGCTTCCEEECTTSCCCC-CG-----------G-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC
T ss_pred             HHccCCCCCEEEeeCCCCCC-Ch-----------h-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC
Confidence            46777888888888888773 22           2 567777777 788887773 33 577778888888888877642


Q ss_pred             chhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc---------cCCcccEEEccCCccccCCCh
Q 039018           84 ILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS---------ILNLLRITDRSKNNFSGVLPA  153 (181)
Q Consensus        84 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n---------~l~~L~~l~l~~n~~~~~~p~  153 (181)
                        +.+       ..+++|+.|++++|.+++.  ..+..+++|++ .+.+|         .+++|+.|++++|.++ .++ 
T Consensus       125 --~~l-------~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~-~l~-  191 (605)
T 1m9s_A          125 --NGL-------VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLR-  191 (605)
T ss_dssp             --GGG-------GGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-BCG-
T ss_pred             --ccc-------cCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCC-CCh-
Confidence              335       6677788888887777633  55677777776 44444         5677889999999888 444 


Q ss_pred             hHHHhcccCCEeEecCCccccc
Q 039018          154 ELVTDLVALRSLNLFHNHFKEK  175 (181)
Q Consensus       154 ~~~~~l~~L~~L~L~~n~l~~~  175 (181)
                      .+ ..+++|+.|+|++|.+++.
T Consensus       192 ~l-~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          192 AL-AGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             GG-TTCTTCSEEECCSEEEECC
T ss_pred             HH-ccCCCCCEEEccCCcCcCC
Confidence            45 8889999999999988743

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.64  E-value=1.5e-15  Score=112.42  Aligned_cols=140  Identities=17%  Similarity=0.218  Sum_probs=82.5

Q ss_pred             CCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccc
Q 039018            6 PENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEI   84 (181)
Q Consensus         6 ~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~   84 (181)
                      +..+++|+.|++++|.++ .++            ++..+++|+. ++++|.+.+ ++. +..+++|++|++++|.+.+ +
T Consensus        37 ~~~l~~L~~L~l~~n~i~-~l~------------~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l  100 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQ-SLA------------GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-L  100 (263)
T ss_dssp             HHHHTTCSEEECTTSCCC-CCT------------TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-C
T ss_pred             hhhcCcCcEEECcCCCcc-cch------------HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-c
Confidence            445667777777777766 222            2455566666 666666663 333 5666666666666666543 2


Q ss_pred             hhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc---------cCCcccEEEccCCccccCCChh
Q 039018           85 LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS---------ILNLLRITDRSKNNFSGVLPAE  154 (181)
Q Consensus        85 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n---------~l~~L~~l~l~~n~~~~~~p~~  154 (181)
                      +..        .. .+|+.|++++|++++ ++ .+..+++|++ .+.+|         .+++|++|++++|.+++.  ..
T Consensus       101 ~~~--------~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~--~~  167 (263)
T 1xeu_A          101 NGI--------PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT--GG  167 (263)
T ss_dssp             TTC--------CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC--TT
T ss_pred             Ccc--------cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch--HH
Confidence            221        12 555555555555542 22 3444444444 23332         355688888888888843  44


Q ss_pred             HHHhcccCCEeEecCCccccc
Q 039018          155 LVTDLVALRSLNLFHNHFKEK  175 (181)
Q Consensus       155 ~~~~l~~L~~L~L~~n~l~~~  175 (181)
                      + ..+++|+.|++++|.+++.
T Consensus       168 l-~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          168 L-TRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             S-TTCCCCCEEEEEEEEEECC
T ss_pred             h-ccCCCCCEEeCCCCcccCC
Confidence            5 7888888888888888743

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.64  E-value=1.7e-16  Score=129.26  Aligned_cols=106  Identities=20%  Similarity=0.158  Sum_probs=81.3

Q ss_pred             chh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccc
Q 039018           47 LKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSAR  125 (181)
Q Consensus        47 L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l  125 (181)
                      |+. ++++|.++ .+|. ++.+++|+.|++++|.+. .+|..+       +.+++|+.|++++|.++ .+| .++.    
T Consensus       443 L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~-------~~l~~L~~L~Ls~N~l~-~lp-~l~~----  506 (567)
T 1dce_A          443 VRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPAL-------AALRCLEVLQASDNALE-NVD-GVAN----  506 (567)
T ss_dssp             CSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGG-------GGCTTCCEEECCSSCCC-CCG-GGTT----
T ss_pred             ceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhh-------hcCCCCCEEECCCCCCC-CCc-ccCC----
Confidence            444 56667776 3565 777778888888888777 667777       77788888888888877 356 5665    


Q ss_pred             ccccccccCCcccEEEccCCccccCC-ChhHHHhcccCCEeEecCCcccccCC
Q 039018          126 KEVGYTSILNLLRITDRSKNNFSGVL-PAELVTDLVALRSLNLFHNHFKEKFP  177 (181)
Q Consensus       126 ~~~~~~n~l~~L~~l~l~~n~~~~~~-p~~~~~~l~~L~~L~L~~n~l~~~~p  177 (181)
                              +++|+.|++++|++++.. |..+ +.+++|+.|+|++|.+++..|
T Consensus       507 --------l~~L~~L~Ls~N~l~~~~~p~~l-~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          507 --------LPRLQELLLCNNRLQQSAAIQPL-VSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             --------CSSCCEEECCSSCCCSSSTTGGG-GGCTTCCEEECTTSGGGGSSS
T ss_pred             --------CCCCcEEECCCCCCCCCCCcHHH-hcCCCCCEEEecCCcCCCCcc
Confidence                    556999999999999655 8888 999999999999999995433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.63  E-value=8.3e-18  Score=130.74  Aligned_cols=125  Identities=20%  Similarity=0.180  Sum_probs=89.9

Q ss_pred             ccchh-cccccccc-CCCC---cccCCCCCCcEEEcCCCccccc-----chhHhhhccCCCCCCCCccEEEcccccce--
Q 039018           45 TSLKH-SISYNVLE-GKLP---TSFGRLREPRSISLSWANKSQE-----ILEIFHSFSRDNWTLRSLQILDIACNNLS--  112 (181)
Q Consensus        45 ~~L~~-~l~~n~~~-~~~~---~~~~~l~~L~~L~l~~n~~~~~-----~~~~~~~~~~~~~~~~~L~~L~l~~n~i~--  112 (181)
                      ++|+. ++++|.+. ...+   ..+..+++|++|++++|.+...     .+..+       ..+++|+.|++++|.++  
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l-------~~~~~L~~L~Ls~n~l~~~  231 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL-------AYCQELKVLDLQDNTFTHL  231 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG-------GGCTTCCEEECCSSCCHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHh-------hcCCCccEEECcCCCCCcH
Confidence            56666 66666665 2222   3445566777777777766521     12234       67888999999999885  


Q ss_pred             --eecCchhhccccccc-ccccc---------------c--CCcccEEEccCCcccc----CCChhHHHhcccCCEeEec
Q 039018          113 --GAIPACISNSSARKE-VGYTS---------------I--LNLLRITDRSKNNFSG----VLPAELVTDLVALRSLNLF  168 (181)
Q Consensus       113 --~~~p~~~~~~~~l~~-~~~~n---------------~--l~~L~~l~l~~n~~~~----~~p~~~~~~l~~L~~L~L~  168 (181)
                        +.+|..+..+++|++ .+.+|               .  +++|++|++++|.+++    .+|..++..+++|++|+++
T Consensus       232 g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~  311 (386)
T 2ca6_A          232 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN  311 (386)
T ss_dssp             HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred             HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEcc
Confidence              467778888888888 55555               1  7889999999999986    3777775678999999999


Q ss_pred             CCcccccC
Q 039018          169 HNHFKEKF  176 (181)
Q Consensus       169 ~n~l~~~~  176 (181)
                      +|.+++..
T Consensus       312 ~N~l~~~~  319 (386)
T 2ca6_A          312 GNRFSEED  319 (386)
T ss_dssp             TSBSCTTS
T ss_pred             CCcCCcch
Confidence            99998654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.63  E-value=1.4e-16  Score=127.64  Aligned_cols=154  Identities=16%  Similarity=0.089  Sum_probs=97.1

Q ss_pred             CCCCcCCCeeeccCcccccccCc-cccc-------cccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcC
Q 039018            6 PENLSSLRYLDLSDNQFNSTIPE-WISR-------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLS   76 (181)
Q Consensus         6 ~~~l~~L~~L~ls~n~i~~~~p~-~~~~-------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~   76 (181)
                      +..+++|+.|++++|.+.+..+. .+..       +.+..+   ..+++|+. ++++|.+.+..|..++.+++|++|+++
T Consensus        76 l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  152 (487)
T 3oja_A           76 LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK  152 (487)
T ss_dssp             CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECT
T ss_pred             cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECC
Confidence            66778888888888887732211 1100       111111   12455666 677777766556666667777777777


Q ss_pred             CCcccccchhHhhhccCCCC-CCCCccEEEcccccceeecCchhhccccccc-ccccc----------cCCcccEEEccC
Q 039018           77 WANKSQEILEIFHSFSRDNW-TLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS----------ILNLLRITDRSK  144 (181)
Q Consensus        77 ~n~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n----------~l~~L~~l~l~~  144 (181)
                      +|.+.+..|..+       . .+++|+.|++++|.+++. |. ...+++|++ .+.+|          .+++|+.|++++
T Consensus       153 ~N~l~~~~~~~l-------~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~  223 (487)
T 3oja_A          153 LNEIDTVNFAEL-------AASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN  223 (487)
T ss_dssp             TSCCCEEEGGGG-------GGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTT
T ss_pred             CCCCCCcChHHH-------hhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecC
Confidence            777666555555       3 455566666666655533 22 223445555 33333          356799999999


Q ss_pred             CccccCCChhHHHhcccCCEeEecCCccc
Q 039018          145 NNFSGVLPAELVTDLVALRSLNLFHNHFK  173 (181)
Q Consensus       145 n~~~~~~p~~~~~~l~~L~~L~L~~n~l~  173 (181)
                      |.++ .+|..+ ..+++|+.|++++|.+.
T Consensus       224 N~l~-~lp~~l-~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          224 NKLV-LIEKAL-RFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             SCCC-EECTTC-CCCTTCCEEECTTCCBC
T ss_pred             CcCc-ccchhh-ccCCCCCEEEcCCCCCc
Confidence            9999 578777 88999999999999987

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.63  E-value=8.7e-17  Score=134.33  Aligned_cols=119  Identities=18%  Similarity=0.171  Sum_probs=102.0

Q ss_pred             cCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeec
Q 039018           37 ISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAI  115 (181)
Q Consensus        37 l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~  115 (181)
                      .+..+..+..|+. ++++|.+. .+|..+..+++|++|++++|.+. .+|..+       +.+.+|+.|+|++|.++ .+
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~-------~~l~~L~~L~Ls~N~l~-~l  285 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEI-------KNLSNLRVLDLSHNRLT-SL  285 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG-------GGGTTCCEEECTTSCCS-SC
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhh-------hCCCCCCEEeCcCCcCC-cc
Confidence            4566788899999 99999998 78888889999999999999988 788888       89999999999999998 88


Q ss_pred             CchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCC
Q 039018          116 PACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGS  179 (181)
Q Consensus       116 p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~  179 (181)
                      |..++.++            +|++|++++|.++ .+|..+ +.+++|+.|+|++|.+++.+|..
T Consensus       286 p~~~~~l~------------~L~~L~L~~N~l~-~lp~~~-~~l~~L~~L~L~~N~l~~~~p~~  335 (727)
T 4b8c_D          286 PAELGSCF------------QLKYFYFFDNMVT-TLPWEF-GNLCNLQFLGVEGNPLEKQFLKI  335 (727)
T ss_dssp             CSSGGGGT------------TCSEEECCSSCCC-CCCSST-TSCTTCCCEECTTSCCCSHHHHH
T ss_pred             ChhhcCCC------------CCCEEECCCCCCC-ccChhh-hcCCCccEEeCCCCccCCCChHH
Confidence            99888854            4999999999998 889887 99999999999999999877654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.62  E-value=1.6e-15  Score=120.60  Aligned_cols=118  Identities=20%  Similarity=0.282  Sum_probs=74.7

Q ss_pred             ccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchh
Q 039018           41 LGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI  119 (181)
Q Consensus        41 l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~  119 (181)
                      +..+++|+. ++++|.+.+. +. +..+++|+.|++++|.+.+..+  +       ..+++|+.|++++|++++..|  +
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~-------~~l~~L~~L~L~~n~l~~~~~--~  327 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--I-------SNLKNLTYLTLYFNNISDISP--V  327 (466)
T ss_dssp             GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--G-------GGCTTCSEEECCSSCCSCCGG--G
T ss_pred             hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--h-------cCCCCCCEEECcCCcCCCchh--h
Confidence            445556666 6666666532 22 5566666666666666554322  4       566777777777777764433  5


Q ss_pred             hccccccc-ccccc---------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccc
Q 039018          120 SNSSARKE-VGYTS---------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE  174 (181)
Q Consensus       120 ~~~~~l~~-~~~~n---------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~  174 (181)
                      ..+++|++ .+.+|         .+++|+.|++++|++++..|  + ..+++|+.|++++|.+++
T Consensus       328 ~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~-~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          328 SSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--L-ANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG--G-TTCTTCCEEECCCEEEEC
T ss_pred             ccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch--h-hcCCCCCEEeccCCcccC
Confidence            56666666 44444         55667788888888775544  4 777888888888887774

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.62  E-value=3.3e-15  Score=105.77  Aligned_cols=115  Identities=22%  Similarity=0.253  Sum_probs=97.5

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK   80 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (181)
                      +|..+.  +.|+.|++++|.|+            .+|..+.++++|+. ++++|.++...+..|..+++|++|++++|.+
T Consensus        25 ip~~~~--~~l~~L~L~~n~i~------------~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           25 LPKGIP--RDVTELYLDGNQFT------------LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             CCSCCC--TTCCEEECCSSCCC------------SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCCC--CCCCEEECCCCcCc------------hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            666653  68999999999998            34456788999999 9999999977778899999999999999999


Q ss_pred             cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCcccc
Q 039018           81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSG  149 (181)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~  149 (181)
                      ....+..|       ..+++|+.|++++|.+++..+..+..+            ++|+.+++++|.+..
T Consensus        91 ~~i~~~~f-------~~l~~L~~L~L~~N~l~~~~~~~~~~l------------~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           91 RCIPPRTF-------DGLKSLRLLSLHGNDISVVPEGAFNDL------------SALSHLAIGANPLYC  140 (193)
T ss_dssp             CBCCTTTT-------TTCTTCCEEECCSSCCCBCCTTTTTTC------------TTCCEEECCSSCEEC
T ss_pred             CEeCHHHh-------CCCCCCCEEECCCCCCCeeChhhhhcC------------ccccEEEeCCCCeec
Confidence            98777788       899999999999999984444457664            459999999999874

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.62  E-value=1.9e-15  Score=116.08  Aligned_cols=43  Identities=19%  Similarity=0.271  Sum_probs=31.4

Q ss_pred             CcccEEEccC-CccccCCChhHHHhcccCCEeEecCCcccccCCCC
Q 039018          135 NLLRITDRSK-NNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGS  179 (181)
Q Consensus       135 ~~L~~l~l~~-n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~  179 (181)
                      .+|+.+++++ |.++ .+|...|..+++|+.|++++|+++ .+|..
T Consensus       177 ~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~  220 (350)
T 4ay9_X          177 TQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSY  220 (350)
T ss_dssp             EEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCSS
T ss_pred             cchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccChh
Confidence            3477777764 5555 677665588888888898888888 67654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.62  E-value=1.7e-15  Score=112.21  Aligned_cols=138  Identities=17%  Similarity=0.167  Sum_probs=111.6

Q ss_pred             CCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchh
Q 039018            8 NLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILE   86 (181)
Q Consensus         8 ~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~   86 (181)
                      ++..+..+++++|.+++ ++            .+.++++|+. ++++|.+. .++ .+..+++|++|++++|.+.+..+ 
T Consensus        17 ~l~~l~~l~l~~~~i~~-~~------------~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~-   80 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTD-LV------------SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP-   80 (263)
T ss_dssp             HHHHHHHHHHTCSCTTS-EE------------CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-
T ss_pred             HHHHHHHHHhcCCCccc-cc------------chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh-
Confidence            45677788899998872 22            3678899999 99999998 566 68899999999999999986544 


Q ss_pred             HhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc---------cCCcccEEEccCCccccCCChhHH
Q 039018           87 IFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS---------ILNLLRITDRSKNNFSGVLPAELV  156 (181)
Q Consensus        87 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n---------~l~~L~~l~l~~n~~~~~~p~~~~  156 (181)
                       +       ..+++|+.|++++|+++ .+|....  ++|++ .+.+|         .+++|++|++++|+++ .++ .+ 
T Consensus        81 -l-------~~l~~L~~L~L~~N~l~-~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~-~~~-~l-  146 (263)
T 1xeu_A           81 -L-------KDLTKLEELSVNRNRLK-NLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLK-SIV-ML-  146 (263)
T ss_dssp             -G-------TTCSSCCEEECCSSCCS-CCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCC-BCG-GG-
T ss_pred             -h-------ccCCCCCEEECCCCccC-CcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCC-CCh-HH-
Confidence             7       89999999999999998 4554333  77777 55555         6778999999999998 455 56 


Q ss_pred             HhcccCCEeEecCCccccc
Q 039018          157 TDLVALRSLNLFHNHFKEK  175 (181)
Q Consensus       157 ~~l~~L~~L~L~~n~l~~~  175 (181)
                      ..+++|+.|++++|.+++.
T Consensus       147 ~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          147 GFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             GGCTTCCEEECTTSCCCBC
T ss_pred             ccCCCCCEEECCCCcCcch
Confidence            8899999999999999853

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.61  E-value=4.2e-15  Score=113.71  Aligned_cols=149  Identities=22%  Similarity=0.273  Sum_probs=107.3

Q ss_pred             CCCCcCCCeeeccCcccccccCccccc------------cccccCCcccccccchh-ccccccccCCCCcccCCCCCCcE
Q 039018            6 PENLSSLRYLDLSDNQFNSTIPEWISR------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRS   72 (181)
Q Consensus         6 ~~~l~~L~~L~ls~n~i~~~~p~~~~~------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~   72 (181)
                      +..+++|+.|++++|.+.+ ++. +..            ....++. +..+++|+. ++++|.+.. .+. +..+++|++
T Consensus       173 ~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~  247 (347)
T 4fmz_A          173 IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITD-LSP-LANLSQLTW  247 (347)
T ss_dssp             GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCE
T ss_pred             hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCE
Confidence            5667778888888887763 332 211            0001111 667888888 899998884 443 788899999


Q ss_pred             EEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcccEE
Q 039018           73 ISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLLRIT  140 (181)
Q Consensus        73 L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L~~l  140 (181)
                      |++++|.+...  +.+       ..+++|+.|++++|.+++ + +.+..+++|++ .+.+|           .+++|++|
T Consensus       248 L~l~~n~l~~~--~~~-------~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  316 (347)
T 4fmz_A          248 LEIGTNQISDI--NAV-------KDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL  316 (347)
T ss_dssp             EECCSSCCCCC--GGG-------TTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred             EECCCCccCCC--hhH-------hcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence            99998887753  345       778888888888888873 3 45777888888 55555           67889999


Q ss_pred             EccCCccccCCChhHHHhcccCCEeEecCCccc
Q 039018          141 DRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK  173 (181)
Q Consensus       141 ~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~  173 (181)
                      ++++|.+++ ++. + ..+++|+.|++++|.++
T Consensus       317 ~L~~n~l~~-~~~-~-~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          317 FLSQNHITD-IRP-L-ASLSKMDSADFANQVIK  346 (347)
T ss_dssp             ECCSSSCCC-CGG-G-GGCTTCSEESSSCC---
T ss_pred             EccCCcccc-ccC-h-hhhhccceeehhhhccc
Confidence            999999995 443 5 89999999999999986

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.61  E-value=3.2e-17  Score=127.43  Aligned_cols=41  Identities=12%  Similarity=0.024  Sum_probs=25.4

Q ss_pred             cccccchh-ccccccccC----CCCcccCCCCCCcEEEcCCCcccc
Q 039018           42 GNLTSLKH-SISYNVLEG----KLPTSFGRLREPRSISLSWANKSQ   82 (181)
Q Consensus        42 ~~l~~L~~-~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~   82 (181)
                      ..+++|+. ++++|.+..    .++..+..+++|++|++++|.+..
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~  136 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP  136 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCH
Confidence            45666666 677766664    244555666666666666666643

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.61  E-value=3.9e-16  Score=118.84  Aligned_cols=149  Identities=14%  Similarity=0.096  Sum_probs=94.7

Q ss_pred             CCCCCCcCCCeeeccCcccccc-cCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCC-cc
Q 039018            4 NGPENLSSLRYLDLSDNQFNST-IPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWA-NK   80 (181)
Q Consensus         4 ~~~~~l~~L~~L~ls~n~i~~~-~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~~   80 (181)
                      ..+.++++|+.|++++|.+.+. +|           ..+..+++|++ ++++|.+.+..+..++.+++|++|++++| .+
T Consensus        87 ~~~~~~~~L~~L~L~~~~l~~~~~~-----------~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l  155 (336)
T 2ast_B           87 AEHFSPFRVQHMDLSNSVIEVSTLH-----------GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF  155 (336)
T ss_dssp             CSCCCCBCCCEEECTTCEECHHHHH-----------HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSC
T ss_pred             hhhccCCCCCEEEccCCCcCHHHHH-----------HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCC
Confidence            3455677788888888777632 33           33556777777 77777776666666777777777777777 45


Q ss_pred             cc-cchhHhhhccCCCCCCCCccEEEcccc-cceee-cCchhhccc-cccc-ccccc--------------cCCcccEEE
Q 039018           81 SQ-EILEIFHSFSRDNWTLRSLQILDIACN-NLSGA-IPACISNSS-ARKE-VGYTS--------------ILNLLRITD  141 (181)
Q Consensus        81 ~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n-~i~~~-~p~~~~~~~-~l~~-~~~~n--------------~l~~L~~l~  141 (181)
                      .+ .++..+       ..+++|+.|++++| .+++. ++..+..++ +|++ .+.+|              .+++|++|+
T Consensus       156 ~~~~l~~~~-------~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~  228 (336)
T 2ast_B          156 SEFALQTLL-------SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  228 (336)
T ss_dssp             CHHHHHHHH-------HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             CHHHHHHHH-------hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence            54 245555       56677777777777 66643 455566666 6665 33332              455667777


Q ss_pred             ccCCc-cccCCChhHHHhcccCCEeEecCCc
Q 039018          142 RSKNN-FSGVLPAELVTDLVALRSLNLFHNH  171 (181)
Q Consensus       142 l~~n~-~~~~~p~~~~~~l~~L~~L~L~~n~  171 (181)
                      +++|. +++..+..+ ..+++|+.|++++|.
T Consensus       229 l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          229 LSDSVMLKNDCFQEF-FQLNYLQHLSLSRCY  258 (336)
T ss_dssp             CTTCTTCCGGGGGGG-GGCTTCCEEECTTCT
T ss_pred             CCCCCcCCHHHHHHH-hCCCCCCEeeCCCCC
Confidence            77766 554455555 666677777776663

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.60  E-value=7.1e-15  Score=116.86  Aligned_cols=71  Identities=21%  Similarity=0.143  Sum_probs=38.8

Q ss_pred             ccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchh
Q 039018           41 LGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI  119 (181)
Q Consensus        41 l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~  119 (181)
                      ++.+++|++ ++++|.+.+ ++  ++.+++|++|++++|.+.+. +  +       ..+++|+.|++++|++++ ++  +
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~l-~--~-------~~l~~L~~L~l~~N~l~~-l~--l  144 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTKL-D--V-------SQNPLLTYLNCARNTLTE-ID--V  144 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSCC-C--C-------TTCTTCCEEECTTSCCSC-CC--C
T ss_pred             cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCee-c--C-------CCCCcCCEEECCCCccce-ec--c
Confidence            455566666 666666653 22  55666666666666665532 2  3       555666666666666553 22  4


Q ss_pred             hccccccc
Q 039018          120 SNSSARKE  127 (181)
Q Consensus       120 ~~~~~l~~  127 (181)
                      +.+++|++
T Consensus       145 ~~l~~L~~  152 (457)
T 3bz5_A          145 SHNTQLTE  152 (457)
T ss_dssp             TTCTTCCE
T ss_pred             ccCCcCCE
Confidence            44444444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.60  E-value=1e-14  Score=115.96  Aligned_cols=148  Identities=18%  Similarity=0.117  Sum_probs=93.5

Q ss_pred             CCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccc
Q 039018            6 PENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEI   84 (181)
Q Consensus         6 ~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~   84 (181)
                      ++.+++|+.|++++|.+++ ++             ++.+++|++ ++++|.+.+ ++  ++.+++|++|++++|.+.+..
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~-~~-------------~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~  143 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTN-LD-------------VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEID  143 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSC-CC-------------CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCC
T ss_pred             cccCCCCCEEECcCCCCce-ee-------------cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccceec
Confidence            6777888888888888873 22             344555555 555555553 22  455555555555555544321


Q ss_pred             hhHhhh----------cc--CCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc--------cCCcccEEEcc
Q 039018           85 LEIFHS----------FS--RDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS--------ILNLLRITDRS  143 (181)
Q Consensus        85 ~~~~~~----------~~--~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n--------~l~~L~~l~l~  143 (181)
                      ...+..          ..  ..+..+++|+.|++++|++++ +|  +..+++|++ .+.+|        .+++|++|+++
T Consensus       144 l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls  220 (457)
T 3bz5_A          144 VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCS  220 (457)
T ss_dssp             CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECC
T ss_pred             cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCeeccccCCCCCEEECc
Confidence            000000          00  012567788888888888874 45  667777777 44444        56778899999


Q ss_pred             CCccccCCChhHHHhcccCCEeEecCCcccccCC
Q 039018          144 KNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFP  177 (181)
Q Consensus       144 ~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p  177 (181)
                      +|++++ +|  + ..+++|+.|++++|.+++..+
T Consensus       221 ~N~l~~-ip--~-~~l~~L~~L~l~~N~l~~~~~  250 (457)
T 3bz5_A          221 SNKLTE-ID--V-TPLTQLTYFDCSVNPLTELDV  250 (457)
T ss_dssp             SSCCSC-CC--C-TTCTTCSEEECCSSCCSCCCC
T ss_pred             CCcccc-cC--c-cccCCCCEEEeeCCcCCCcCH
Confidence            999884 66  5 788889999999998886433

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.60  E-value=1.6e-15  Score=115.08  Aligned_cols=155  Identities=16%  Similarity=0.088  Sum_probs=90.9

Q ss_pred             CCCCcCCCeeeccCcccccccC-ccccc-------cccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcC
Q 039018            6 PENLSSLRYLDLSDNQFNSTIP-EWISR-------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLS   76 (181)
Q Consensus         6 ~~~l~~L~~L~ls~n~i~~~~p-~~~~~-------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~   76 (181)
                      +..+++|++|++++|.+++..+ ..+..       +....+   ..+++|+. ++++|.+.+..+..+..+++|++|+++
T Consensus        76 ~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls  152 (317)
T 3o53_A           76 LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK  152 (317)
T ss_dssp             ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT
T ss_pred             hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECC
Confidence            5667777777777777763211 01100       111111   12445666 666666665555556666667777777


Q ss_pred             CCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc----------cCCcccEEEccCC
Q 039018           77 WANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS----------ILNLLRITDRSKN  145 (181)
Q Consensus        77 ~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n----------~l~~L~~l~l~~n  145 (181)
                      +|.+.+..+..+.      ..+++|+.|++++|.+++. +. ...+++|++ .+.+|          .+++|++|++++|
T Consensus       153 ~N~l~~~~~~~~~------~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N  224 (317)
T 3o53_A          153 LNEIDTVNFAELA------ASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN  224 (317)
T ss_dssp             TSCCCEEEGGGGG------GGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS
T ss_pred             CCCCCcccHHHHh------hccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCC
Confidence            6666654444431      1345555555555555422 22 112444444 33333          3566899999999


Q ss_pred             ccccCCChhHHHhcccCCEeEecCCccc
Q 039018          146 NFSGVLPAELVTDLVALRSLNLFHNHFK  173 (181)
Q Consensus       146 ~~~~~~p~~~~~~l~~L~~L~L~~n~l~  173 (181)
                      +++ .+|..+ ..+++|+.|++++|.++
T Consensus       225 ~l~-~l~~~~-~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          225 KLV-LIEKAL-RFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CCC-EECTTC-CCCTTCCEEECTTCCCB
T ss_pred             ccc-chhhHh-hcCCCCCEEEccCCCcc
Confidence            998 678777 88899999999999987

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.60  E-value=8e-15  Score=116.60  Aligned_cols=155  Identities=23%  Similarity=0.232  Sum_probs=105.2

Q ss_pred             CCCCcCCCeeeccCcccccccCccccc------c----ccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEE
Q 039018            6 PENLSSLRYLDLSDNQFNSTIPEWISR------I----NCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSIS   74 (181)
Q Consensus         6 ~~~l~~L~~L~ls~n~i~~~~p~~~~~------~----~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~   74 (181)
                      +..+++|+.|++++|.+.+..|-....      +    ...+ ..+..+++|+. ++++|.+.+..+  +..+++|+.|+
T Consensus       195 l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  271 (466)
T 1o6v_A          195 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK  271 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred             hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEE
Confidence            566777888888888777443311100      0    0011 23556677777 777777774332  67778888888


Q ss_pred             cCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc---------cCCcccEEEccC
Q 039018           75 LSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS---------ILNLLRITDRSK  144 (181)
Q Consensus        75 l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n---------~l~~L~~l~l~~  144 (181)
                      +++|.+.+..+  +       ..+++|+.|++++|++++. +. +..+++|++ .+.+|         .+++|+.|++++
T Consensus       272 l~~n~l~~~~~--~-------~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~  340 (466)
T 1o6v_A          272 LGANQISNISP--L-------AGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN  340 (466)
T ss_dssp             CCSSCCCCCGG--G-------TTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCS
T ss_pred             CCCCccCcccc--c-------cCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCC
Confidence            88887765433  5       7788888888888888743 33 677788877 55555         567788888888


Q ss_pred             CccccCCChhHHHhcccCCEeEecCCcccccCC
Q 039018          145 NNFSGVLPAELVTDLVALRSLNLFHNHFKEKFP  177 (181)
Q Consensus       145 n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p  177 (181)
                      |.+++ + ..+ ..+++|+.|++++|.+++..|
T Consensus       341 n~l~~-~-~~l-~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          341 NKVSD-V-SSL-ANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             SCCCC-C-GGG-TTCTTCCEEECCSSCCCBCGG
T ss_pred             CccCC-c-hhh-ccCCCCCEEeCCCCccCccch
Confidence            88874 3 355 788889999999998886554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.59  E-value=8.6e-15  Score=119.17  Aligned_cols=122  Identities=20%  Similarity=0.192  Sum_probs=103.8

Q ss_pred             CCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhh
Q 039018           11 SLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFH   89 (181)
Q Consensus        11 ~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~   89 (181)
                      .|+.|++++|.++            .+|. ++.+++|+. ++++|.+. .+|..++.+++|+.|++++|.+.+ +| .+ 
T Consensus       442 ~L~~L~Ls~n~l~------------~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l-  504 (567)
T 1dce_A          442 DVRVLHLAHKDLT------------VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GV-  504 (567)
T ss_dssp             TCSEEECTTSCCS------------SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GG-
T ss_pred             CceEEEecCCCCC------------CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-cc-
Confidence            5889999999998            3334 788999999 99999999 889999999999999999999986 56 77 


Q ss_pred             hccCCCCCCCCccEEEcccccceeec-CchhhcccccccccccccCCcccEEEccCCccccCCCh--hHHHhcccCCEeE
Q 039018           90 SFSRDNWTLRSLQILDIACNNLSGAI-PACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPA--ELVTDLVALRSLN  166 (181)
Q Consensus        90 ~~~~~~~~~~~L~~L~l~~n~i~~~~-p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~--~~~~~l~~L~~L~  166 (181)
                            +.+++|+.|++++|.+++.. |..++.++            +|+.|++++|.+++..|.  .++..+++|+.|+
T Consensus       505 ------~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~------------~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          505 ------ANLPRLQELLLCNNRLQQSAAIQPLVSCP------------RLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             ------TTCSSCCEEECCSSCCCSSSTTGGGGGCT------------TCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             ------CCCCCCcEEECCCCCCCCCCCcHHHhcCC------------CCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence                  89999999999999999665 88898854            499999999999965332  2336689999997


Q ss_pred             e
Q 039018          167 L  167 (181)
Q Consensus       167 L  167 (181)
                      +
T Consensus       567 l  567 (567)
T 1dce_A          567 T  567 (567)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.59  E-value=1.5e-16  Score=122.84  Aligned_cols=39  Identities=23%  Similarity=0.096  Sum_probs=20.4

Q ss_pred             CcccEEEccCCccccC----CChhHHHh-cccCCEeEecCCcccc
Q 039018          135 NLLRITDRSKNNFSGV----LPAELVTD-LVALRSLNLFHNHFKE  174 (181)
Q Consensus       135 ~~L~~l~l~~n~~~~~----~p~~~~~~-l~~L~~L~L~~n~l~~  174 (181)
                      ++|++|++++|.+++.    ++..+ .. .++|+.|+|++|.+++
T Consensus       196 ~~L~~L~Ls~N~i~~~~~~~l~~~l-~~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          196 ASVTSLDLSANLLGLKSYAELAYIF-SSIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHH-HHSCTTCCEEECCSSCCCC
T ss_pred             CCCCEEECCCCCCChhHHHHHHHHH-hcCCCCceEEECcCCCCCc
Confidence            3566666666666532    22233 22 2356666666666653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.59  E-value=5.8e-16  Score=117.91  Aligned_cols=150  Identities=15%  Similarity=0.098  Sum_probs=117.4

Q ss_pred             cCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCC-CCcccCCCCCCcEEEcCCCcccccchhH
Q 039018           10 SSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGK-LPTSFGRLREPRSISLSWANKSQEILEI   87 (181)
Q Consensus        10 ~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~   87 (181)
                      +.++.+++++|.+.+..+            .+..+++|++ ++++|.+.+. ++..+..+++|++|++++|.+....+..
T Consensus        70 ~~l~~L~l~~n~l~~~~~------------~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~  137 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLA------------EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT  137 (336)
T ss_dssp             TTCSEEECTTCEECSCCC------------SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH
T ss_pred             ccceEEEcCCccccccch------------hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH
Confidence            567777777777764333            2557889999 9999998755 7777889999999999999988888888


Q ss_pred             hhhccCCCCCCCCccEEEcccc-ccee-ecCchhhccccccc-ccccc-------------cCC-cccEEEccCCc--cc
Q 039018           88 FHSFSRDNWTLRSLQILDIACN-NLSG-AIPACISNSSARKE-VGYTS-------------ILN-LLRITDRSKNN--FS  148 (181)
Q Consensus        88 ~~~~~~~~~~~~~L~~L~l~~n-~i~~-~~p~~~~~~~~l~~-~~~~n-------------~l~-~L~~l~l~~n~--~~  148 (181)
                      +       ..+++|+.|++++| .+++ .++..+..+++|++ .+.+|             .++ +|++|++++|.  ++
T Consensus       138 l-------~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~  210 (336)
T 2ast_B          138 L-------AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ  210 (336)
T ss_dssp             H-------TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSC
T ss_pred             H-------hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCC
Confidence            8       88999999999999 6775 36777888899888 44444             456 89999999994  44


Q ss_pred             -cCCChhHHHhcccCCEeEecCCc-ccccCCCC
Q 039018          149 -GVLPAELVTDLVALRSLNLFHNH-FKEKFPGS  179 (181)
Q Consensus       149 -~~~p~~~~~~l~~L~~L~L~~n~-l~~~~p~~  179 (181)
                       +.++..+ ..+++|+.|++++|. +++..+..
T Consensus       211 ~~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~  242 (336)
T 2ast_B          211 KSDLSTLV-RRCPNLVHLDLSDSVMLKNDCFQE  242 (336)
T ss_dssp             HHHHHHHH-HHCTTCSEEECTTCTTCCGGGGGG
T ss_pred             HHHHHHHH-hhCCCCCEEeCCCCCcCCHHHHHH
Confidence             2455555 889999999999998 66555543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.58  E-value=3.1e-15  Score=121.64  Aligned_cols=150  Identities=21%  Similarity=0.290  Sum_probs=92.3

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccc----------cccccCCcccccccchh-ccccccccCCCCcccCCCCCC
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISR----------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREP   70 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~----------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L   70 (181)
                      ||..+.  ++|+.|++++|.|+ .+|..+..          +. .+|. +.+  +|+. ++++|.+++ +|.   .+++|
T Consensus        74 lp~~l~--~~L~~L~Ls~N~l~-~ip~~l~~L~~L~Ls~N~l~-~ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L  142 (571)
T 3cvr_A           74 LPDNLP--PQITVLEITQNALI-SLPELPASLEYLDACDNRLS-TLPE-LPA--SLKHLDVDNNQLTM-LPE---LPALL  142 (571)
T ss_dssp             CCSCCC--TTCSEEECCSSCCS-CCCCCCTTCCEEECCSSCCS-CCCC-CCT--TCCEEECCSSCCSC-CCC---CCTTC
T ss_pred             cCHhHc--CCCCEEECcCCCCc-ccccccCCCCEEEccCCCCC-Ccch-hhc--CCCEEECCCCcCCC-CCC---cCccc
Confidence            455442  56777777777766 44421111          11 1333 332  5555 666666663 444   45666


Q ss_pred             cEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccccCC-------cc-----
Q 039018           71 RSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTSILN-------LL-----  137 (181)
Q Consensus        71 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n~l~-------~L-----  137 (181)
                      ++|++++|.+.+ +|.          .+++|+.|++++|+++ .+|. +.  ++|++ .+.+|.+.       +|     
T Consensus       143 ~~L~Ls~N~l~~-lp~----------~l~~L~~L~Ls~N~L~-~lp~-l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~  207 (571)
T 3cvr_A          143 EYINADNNQLTM-LPE----------LPTSLEVLSVRNNQLT-FLPE-LP--ESLEALDVSTNLLESLPAVPVRNHHSEE  207 (571)
T ss_dssp             CEEECCSSCCSC-CCC----------CCTTCCEEECCSSCCS-CCCC-CC--TTCCEEECCSSCCSSCCCCC--------
T ss_pred             cEEeCCCCccCc-CCC----------cCCCcCEEECCCCCCC-Ccch-hh--CCCCEEECcCCCCCchhhHHHhhhcccc
Confidence            666666666553 222          3456777777777776 3565 44  56666 45555222       45     


Q ss_pred             --cEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCC
Q 039018          138 --RITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGS  179 (181)
Q Consensus       138 --~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~  179 (181)
                        +.|++++|.++ .+|..+ ..+++|+.|+|++|.+++.+|..
T Consensus       208 ~L~~L~Ls~N~l~-~lp~~l-~~l~~L~~L~L~~N~l~~~~p~~  249 (571)
T 3cvr_A          208 TEIFFRCRENRIT-HIPENI-LSLDPTCTIILEDNPLSSRIRES  249 (571)
T ss_dssp             CCEEEECCSSCCC-CCCGGG-GGSCTTEEEECCSSSCCHHHHHH
T ss_pred             cceEEecCCCcce-ecCHHH-hcCCCCCEEEeeCCcCCCcCHHH
Confidence              89999999999 789888 67999999999999998877654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.57  E-value=7.4e-15  Score=120.34  Aligned_cols=141  Identities=18%  Similarity=0.255  Sum_probs=116.1

Q ss_pred             CCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccch
Q 039018            7 ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEIL   85 (181)
Q Consensus         7 ~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~   85 (181)
                      ..+++|+.|++++|.+. .++            .+..+++|+. ++++|.+.+. +. +..+++|+.|++++|.+.. ++
T Consensus        40 ~~L~~L~~L~l~~n~i~-~l~------------~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~l~~-l~  103 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIK-SVQ------------GIQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDENKIKD-LS  103 (605)
T ss_dssp             HHHTTCCCCBCTTCCCC-CCT------------TGGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CT
T ss_pred             hcCCCCCEEECcCCCCC-CCh------------HHccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcCCCCCC-Ch
Confidence            45788999999999998 233            3788999999 9999999954 43 8999999999999999874 33


Q ss_pred             hHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc---------cCCcccEEEccCCccccCCChhH
Q 039018           86 EIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS---------ILNLLRITDRSKNNFSGVLPAEL  155 (181)
Q Consensus        86 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n---------~l~~L~~l~l~~n~~~~~~p~~~  155 (181)
                       .+       ..+++|+.|++++|.+++ + ..+..+++|++ .+.+|         .+++|+.|++++|.+.+..|  +
T Consensus       104 -~l-------~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l  171 (605)
T 1m9s_A          104 -SL-------KDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--L  171 (605)
T ss_dssp             -TS-------TTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG--G
T ss_pred             -hh-------ccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh--h
Confidence             55       889999999999999984 4 45888999988 55555         67889999999999985433  5


Q ss_pred             HHhcccCCEeEecCCcccccCC
Q 039018          156 VTDLVALRSLNLFHNHFKEKFP  177 (181)
Q Consensus       156 ~~~l~~L~~L~L~~n~l~~~~p  177 (181)
                       ..+++|+.|+|++|.+++ +|
T Consensus       172 -~~l~~L~~L~Ls~N~i~~-l~  191 (605)
T 1m9s_A          172 -AGLTKLQNLYLSKNHISD-LR  191 (605)
T ss_dssp             -TTCTTCCEEECCSSCCCB-CG
T ss_pred             -ccCCCCCEEECcCCCCCC-Ch
Confidence             899999999999999984 44

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.57  E-value=7.2e-15  Score=99.51  Aligned_cols=110  Identities=20%  Similarity=0.209  Sum_probs=93.6

Q ss_pred             cccchh-cccccccc-CCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhc
Q 039018           44 LTSLKH-SISYNVLE-GKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISN  121 (181)
Q Consensus        44 l~~L~~-~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~  121 (181)
                      .++++. ++++|.+. +.+|..+..+++|++|++++|.+.+.  ..+       ..+++|+.|++++|.+++.+|..+..
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~-------~~l~~L~~L~Ls~n~i~~~~~~~~~~   86 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANL-------PKLNKLKKLELSDNRVSGGLEVLAEK   86 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTC-------CCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhh-------hcCCCCCEEECCCCcccchHHHHhhh
Confidence            467788 89999998 77888889999999999999998765  556       88999999999999999668887776


Q ss_pred             ccccccccccccCCcccEEEccCCccccC-CChhHHHhcccCCEeEecCCccccc
Q 039018          122 SSARKEVGYTSILNLLRITDRSKNNFSGV-LPAELVTDLVALRSLNLFHNHFKEK  175 (181)
Q Consensus       122 ~~~l~~~~~~n~l~~L~~l~l~~n~~~~~-~p~~~~~~l~~L~~L~L~~n~l~~~  175 (181)
                      ++            +|++|++++|.+++. .+..+ ..+++|+.|++++|.+++.
T Consensus        87 l~------------~L~~L~ls~N~i~~~~~~~~~-~~l~~L~~L~l~~N~l~~~  128 (149)
T 2je0_A           87 CP------------NLTHLNLSGNKIKDLSTIEPL-KKLENLKSLDLFNCEVTNL  128 (149)
T ss_dssp             CT------------TCCEEECTTSCCCSHHHHGGG-GGCTTCCEEECTTCGGGGS
T ss_pred             CC------------CCCEEECCCCcCCChHHHHHH-hhCCCCCEEeCcCCcccch
Confidence            44            499999999999842 23566 8999999999999999953

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.57  E-value=4.9e-15  Score=102.34  Aligned_cols=118  Identities=23%  Similarity=0.215  Sum_probs=98.7

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK   80 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (181)
                      +|..+..+++|+.|++++|.+++.             ..+..+++|+. ++++|.+.+.+|..+..+++|++|++++|.+
T Consensus        41 i~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  107 (168)
T 2ell_A           41 IEGLTAEFVNLEFLSLINVGLISV-------------SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL  107 (168)
T ss_dssp             CSSCCGGGGGCCEEEEESSCCCCC-------------SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSC
T ss_pred             HHHHHHhCCCCCEEeCcCCCCCCh-------------hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCcc
Confidence            678889999999999999999832             34778999999 9999999976888777899999999999998


Q ss_pred             cccc-hhHhhhccCCCCCCCCccEEEcccccceeecCc----hhhcccccccccccccCCcccEEEccCCccccCCCh
Q 039018           81 SQEI-LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPA----CISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPA  153 (181)
Q Consensus        81 ~~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~----~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~  153 (181)
                      .+.. +..+       ..+++|+.|++++|.++ ..|.    .+..            +++|++|++++|.+. .+|.
T Consensus       108 ~~~~~~~~l-------~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~------------l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          108 KDISTLEPL-------KKLECLKSLDLFNCEVT-NLNDYRESVFKL------------LPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             CSSGGGGGG-------SSCSCCCEEECCSSGGG-TSTTHHHHHHTT------------CSSCCEETTEETTSC-BCCS
T ss_pred             CcchhHHHH-------hcCCCCCEEEeeCCcCc-chHHHHHHHHHh------------CccCcEecCCCCChh-hccc
Confidence            7542 2677       89999999999999998 4454    5666            455999999999987 5664

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=2.7e-14  Score=99.43  Aligned_cols=119  Identities=23%  Similarity=0.269  Sum_probs=95.4

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK   80 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (181)
                      +|..+  .++|+.|++++|++. .+|.          ..+..+++|++ ++++|.+.+..+..+..+++|++|++++|.+
T Consensus        22 ~p~~~--~~~l~~L~l~~n~l~-~~~~----------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l   88 (177)
T 2o6r_A           22 VPTGI--PSSATRLELESNKLQ-SLPH----------GVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL   88 (177)
T ss_dssp             CCTTC--CTTCSEEECCSSCCC-CCCT----------TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCC--CCCCcEEEeCCCccc-EeCH----------HHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence            45544  368999999999998 3332          34678899999 9999999966666678999999999999999


Q ss_pred             cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCC
Q 039018           81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLP  152 (181)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p  152 (181)
                      .+..+..+       ..+++|+.|++++|.+++..+..+..            +++|+++++++|.+.+..|
T Consensus        89 ~~~~~~~~-------~~l~~L~~L~l~~N~l~~~~~~~~~~------------l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           89 QSLPNGVF-------DKLTQLKELALDTNQLKSVPDGIFDR------------LTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCTTTT-------TTCTTCCEEECCSSCCSCCCTTTTTT------------CTTCCEEECCSSCBCCCHH
T ss_pred             cccCHHHh-------hCCcccCEEECcCCcceEeCHHHhcC------------CcccCEEEecCCCeeccCc
Confidence            87666677       88999999999999998433344565            4459999999999986544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.54  E-value=5.2e-15  Score=117.55  Aligned_cols=141  Identities=23%  Similarity=0.279  Sum_probs=59.2

Q ss_pred             CCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCC-------------cE
Q 039018            7 ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREP-------------RS   72 (181)
Q Consensus         7 ~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L-------------~~   72 (181)
                      .+.++|+.+++++|.+. .+|           ++++++++|+. ++++|.+.+.+|..++.+++|             ++
T Consensus         8 ~~~~~L~~L~l~~n~l~-~iP-----------~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~   75 (454)
T 1jl5_A            8 VSNTFLQEPLRHSSNLT-EMP-----------VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHE   75 (454)
T ss_dssp             --------------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSE
T ss_pred             cccccchhhhcccCchh-hCC-----------hhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCE
Confidence            35677888888888884 455           34556666666 666666665666666555543             55


Q ss_pred             EEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-------cCCcccEEEccC
Q 039018           73 ISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-------ILNLLRITDRSK  144 (181)
Q Consensus        73 L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-------~l~~L~~l~l~~  144 (181)
                      |++++|.+.+ +|.          ..++|+.|++++|.+++ +|..+   ++|++ .+.+|       ..++|++|++++
T Consensus        76 L~l~~~~l~~-lp~----------~~~~L~~L~l~~n~l~~-lp~~~---~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~  140 (454)
T 1jl5_A           76 LELNNLGLSS-LPE----------LPPHLESLVASCNSLTE-LPELP---QSLKSLLVDNNNLKALSDLPPLLEYLGVSN  140 (454)
T ss_dssp             EECTTSCCSC-CCS----------CCTTCSEEECCSSCCSS-CCCCC---TTCCEEECCSSCCSCCCSCCTTCCEEECCS
T ss_pred             EEecCCcccc-CCC----------CcCCCCEEEccCCcCCc-ccccc---CCCcEEECCCCccCcccCCCCCCCEEECcC
Confidence            6666555442 111          11345555555555542 44322   23333 22222       113466666666


Q ss_pred             CccccCCChhHHHhcccCCEeEecCCcccccCCC
Q 039018          145 NNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPG  178 (181)
Q Consensus       145 n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~  178 (181)
                      |.++ .+| .+ +.+++|++|++++|.++ .+|.
T Consensus       141 n~l~-~lp-~~-~~l~~L~~L~l~~N~l~-~lp~  170 (454)
T 1jl5_A          141 NQLE-KLP-EL-QNSSFLKIIDVDNNSLK-KLPD  170 (454)
T ss_dssp             SCCS-SCC-CC-TTCTTCCEEECCSSCCS-CCCC
T ss_pred             CCCC-CCc-cc-CCCCCCCEEECCCCcCc-ccCC
Confidence            6666 355 34 66666666666666666 3544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.52  E-value=5e-17  Score=115.44  Aligned_cols=88  Identities=22%  Similarity=0.262  Sum_probs=47.4

Q ss_pred             cCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHh
Q 039018           10 SSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIF   88 (181)
Q Consensus        10 ~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~   88 (181)
                      ..++.++++++.+.+..|.--     .+|..+..+++|+. ++++|.+.+ +| .+..+++|++|++++|.+. .+|..+
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~-----~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~   89 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIE-----KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD   89 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCC-----CCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH
T ss_pred             ccccCcchheeEeccccCcHh-----hhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh
Confidence            345555555555554444211     23334555666666 666666653 44 5555666666666666555 344444


Q ss_pred             hhccCCCCCCCCccEEEcccccce
Q 039018           89 HSFSRDNWTLRSLQILDIACNNLS  112 (181)
Q Consensus        89 ~~~~~~~~~~~~L~~L~l~~n~i~  112 (181)
                             ..+++|+.|++++|+++
T Consensus        90 -------~~~~~L~~L~L~~N~l~  106 (198)
T 1ds9_A           90 -------AVADTLEELWISYNQIA  106 (198)
T ss_dssp             -------HHHHHCSEEEEEEEECC
T ss_pred             -------hcCCcCCEEECcCCcCC
Confidence                   44456666666666665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.52  E-value=7.1e-17  Score=114.66  Aligned_cols=133  Identities=19%  Similarity=0.208  Sum_probs=107.8

Q ss_pred             CCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCccc
Q 039018            3 PNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKS   81 (181)
Q Consensus         3 p~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~   81 (181)
                      |..+..+++|+.|++++|.+.+ +           | .+..+++|+. ++++|.+. .+|..+..+++|++|++++|.+.
T Consensus        41 ~~~~~~l~~L~~L~ls~n~l~~-l-----------~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~  106 (198)
T 1ds9_A           41 DATLSTLKACKHLALSTNNIEK-I-----------S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA  106 (198)
T ss_dssp             HHHHHHTTTCSEEECSEEEESC-C-----------C-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC
T ss_pred             hHHHhcCCCCCEEECCCCCCcc-c-----------c-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC
Confidence            3378889999999999999983 3           3 4788999999 99999999 78887788899999999999988


Q ss_pred             ccchhHhhhccCCCCCCCCccEEEcccccceeecCc--hhhcccccccccccccCCcccEEEccCCccccCCCh------
Q 039018           82 QEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPA--CISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPA------  153 (181)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~--~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~------  153 (181)
                      + +| .+       ..+++|+.|++++|+++ .++.  .+..            +++|+++++++|.+.+..|.      
T Consensus       107 ~-l~-~~-------~~l~~L~~L~l~~N~i~-~~~~~~~l~~------------l~~L~~L~l~~N~l~~~~~~~~~~~~  164 (198)
T 1ds9_A          107 S-LS-GI-------EKLVNLRVLYMSNNKIT-NWGEIDKLAA------------LDKLEDLLLAGNPLYNDYKENNATSE  164 (198)
T ss_dssp             C-HH-HH-------HHHHHSSEEEESEEECC-CHHHHHHHTT------------TTTCSEEEECSCHHHHHHHTTTTHHH
T ss_pred             c-CC-cc-------ccCCCCCEEECCCCcCC-chhHHHHHhc------------CCCCCEEEecCCccccccccccchHH
Confidence            5 44 56       78899999999999997 4333  5555            45599999999999765443      


Q ss_pred             ---hHHHhcccCCEeEecCCccc
Q 039018          154 ---ELVTDLVALRSLNLFHNHFK  173 (181)
Q Consensus       154 ---~~~~~l~~L~~L~L~~n~l~  173 (181)
                         .++..+++|+.|+  +|.++
T Consensus       165 ~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          165 YRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHHHHHCSSCSEEC--CGGGT
T ss_pred             HHHHHHHhCCCcEEEC--CcccC
Confidence               2348899999987  67766

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.52  E-value=2e-13  Score=108.43  Aligned_cols=19  Identities=26%  Similarity=0.431  Sum_probs=11.8

Q ss_pred             CCCCCcCCCeeeccCcccc
Q 039018            5 GPENLSSLRYLDLSDNQFN   23 (181)
Q Consensus         5 ~~~~l~~L~~L~ls~n~i~   23 (181)
                      ++.++++|++|++++|+++
T Consensus       148 ~~~~l~~L~~L~l~~N~l~  166 (454)
T 1jl5_A          148 ELQNSSFLKIIDVDNNSLK  166 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCS
T ss_pred             ccCCCCCCCEEECCCCcCc
Confidence            3566666666666666665

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.52  E-value=3.4e-14  Score=109.15  Aligned_cols=156  Identities=18%  Similarity=0.095  Sum_probs=111.4

Q ss_pred             CCCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCC-cccCCCCCCcE-EEcCC
Q 039018            1 PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLP-TSFGRLREPRS-ISLSW   77 (181)
Q Consensus         1 ~lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~-~~~~~l~~L~~-L~l~~   77 (181)
                      +||..+  .++++.|++++|+|+ .+|+          ..|.++++|++ ++++|.+.+.+| ..|.+++++.. +.+..
T Consensus        23 ~iP~~l--~~~l~~L~Ls~N~i~-~i~~----------~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           23 EIPSDL--PRNAIELRFVLTKLR-VIQK----------GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             SCCTTC--CTTCSEEEEESCCCS-EECT----------TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             ccCcCc--CCCCCEEEccCCcCC-CcCH----------HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            367666  367899999999998 4443          35788899999 999998765554 45778888765 55667


Q ss_pred             CcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-------------cCCcccEEEcc
Q 039018           78 ANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-------------ILNLLRITDRS  143 (181)
Q Consensus        78 n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-------------~l~~L~~l~l~  143 (181)
                      |.+....|..|       ..+++|+.+++++|++++..+..+.....+.. .+..+             ....++.|+++
T Consensus        90 N~l~~l~~~~f-------~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~  162 (350)
T 4ay9_X           90 NNLLYINPEAF-------QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN  162 (350)
T ss_dssp             TTCCEECTTSB-------CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred             CcccccCchhh-------hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccc
Confidence            88877767778       88999999999999998444444444444444 22221             22357889999


Q ss_pred             CCccccCCChhHHHhcccCCEeEecC-CcccccCCCC
Q 039018          144 KNNFSGVLPAELVTDLVALRSLNLFH-NHFKEKFPGS  179 (181)
Q Consensus       144 ~n~~~~~~p~~~~~~l~~L~~L~L~~-n~l~~~~p~~  179 (181)
                      +|+++ .++... ....+|+.+++++ |.++ .+|+.
T Consensus       163 ~N~i~-~i~~~~-f~~~~L~~l~l~~~n~l~-~i~~~  196 (350)
T 4ay9_X          163 KNGIQ-EIHNSA-FNGTQLDELNLSDNNNLE-ELPND  196 (350)
T ss_dssp             SSCCC-EECTTS-STTEEEEEEECTTCTTCC-CCCTT
T ss_pred             ccccc-CCChhh-ccccchhHHhhccCCccc-CCCHH
Confidence            99998 677666 4567899999986 5555 78763

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.52  E-value=6.4e-14  Score=97.11  Aligned_cols=107  Identities=20%  Similarity=0.181  Sum_probs=84.5

Q ss_pred             CCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhh
Q 039018           11 SLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFH   89 (181)
Q Consensus        11 ~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~   89 (181)
                      ..+.+++++|.++ .+|+           .+  .+.++. ++++|.+.+..|..+..+++|++|++++|.+.+..+..| 
T Consensus        10 ~~~~l~~s~n~l~-~ip~-----------~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f-   74 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPT-----------GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF-   74 (170)
T ss_dssp             ETTEEECTTSCCS-SCCS-----------CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT-
T ss_pred             CCCEEEeCCCCcC-ccCc-----------cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhc-
Confidence            4678999999998 4453           33  267777 899999997778888999999999999999887666667 


Q ss_pred             hccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccC
Q 039018           90 SFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGV  150 (181)
Q Consensus        90 ~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~  150 (181)
                            ..+++|+.|++++|++++..+..+..+            ++|++|++++|.+...
T Consensus        75 ------~~l~~L~~L~L~~N~l~~~~~~~~~~l------------~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           75 ------DKLTQLTQLSLNDNQLKSIPRGAFDNL------------KSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             ------TTCTTCCEEECCSSCCCCCCTTTTTTC------------TTCCEEECCSSCBCTT
T ss_pred             ------cCCCCCCEEECCCCccCEeCHHHhcCC------------CCCCEEEeCCCCCCCC
Confidence                  788999999999999985444557764            4489999999988743

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.51  E-value=1.1e-13  Score=112.52  Aligned_cols=129  Identities=21%  Similarity=0.282  Sum_probs=73.4

Q ss_pred             CCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhh
Q 039018           11 SLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFH   89 (181)
Q Consensus        11 ~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~   89 (181)
                      +|+.|++++|.+++ +|..+             .++|+. ++++|.+. .+|   ..+++|++|++++|.+.+ +|. + 
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l-------------~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l-  118 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL-------------PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-L-  118 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC-------------CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-C-
T ss_pred             CccEEEeCCCCCCc-cCHhH-------------cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-h-
Confidence            89999999999984 66532             145666 67777766 555   345677777777776664 444 4 


Q ss_pred             hccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-------cCCcccEEEccCCccccCCChhHHHhccc
Q 039018           90 SFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-------ILNLLRITDRSKNNFSGVLPAELVTDLVA  161 (181)
Q Consensus        90 ~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~  161 (181)
                            ..  +|+.|++++|.+++ +|.   .+++|++ .+.+|       .+++|++|++++|.++ .+|. + .  ++
T Consensus       119 ------~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~-~lp~-l-~--~~  181 (571)
T 3cvr_A          119 ------PA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLT-FLPE-L-P--ES  181 (571)
T ss_dssp             ------CT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC-C-C--TT
T ss_pred             ------hc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCC-Ccch-h-h--CC
Confidence                  32  55555555555552 444   3444444 33333       1234555555555555 2444 3 3  55


Q ss_pred             CCEeEecCCcccccCCC
Q 039018          162 LRSLNLFHNHFKEKFPG  178 (181)
Q Consensus       162 L~~L~L~~n~l~~~~p~  178 (181)
                      |+.|+|++|.++ .+|.
T Consensus       182 L~~L~Ls~N~L~-~lp~  197 (571)
T 3cvr_A          182 LEALDVSTNLLE-SLPA  197 (571)
T ss_dssp             CCEEECCSSCCS-SCCC
T ss_pred             CCEEECcCCCCC-chhh
Confidence            555555555555 4444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.51  E-value=1.2e-13  Score=95.79  Aligned_cols=105  Identities=19%  Similarity=0.209  Sum_probs=80.3

Q ss_pred             hh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccc
Q 039018           48 KH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARK  126 (181)
Q Consensus        48 ~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~  126 (181)
                      +. ++++|.+. .+|..+.  +++++|++++|.+.+..|..+       ..+.+|+.|++++|++++..+..+..     
T Consensus        12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~-------~~l~~L~~L~Ls~N~l~~l~~~~f~~-----   76 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVF-------DRLTQLTRLDLDNNQLTVLPAGVFDK-----   76 (170)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTT-------TTCTTCSEEECCSSCCCCCCTTTTTT-----
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhh-------cCcccCCEEECCCCCcCccChhhccC-----
Confidence            44 78888887 5776553  788899999998887777777       88889999999999888444445566     


Q ss_pred             cccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCccccc
Q 039018          127 EVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEK  175 (181)
Q Consensus       127 ~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~  175 (181)
                             +++|++|++++|+++ .+|...|..+++|+.|+|++|.++..
T Consensus        77 -------l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           77 -------LTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             -------CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             -------CCCCCEEECCCCccC-EeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence                   444888999999888 45544338888899999999888754

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.50  E-value=1.5e-13  Score=95.61  Aligned_cols=108  Identities=16%  Similarity=0.173  Sum_probs=82.4

Q ss_pred             CCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhh
Q 039018           12 LRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHS   90 (181)
Q Consensus        12 L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~   90 (181)
                      -+.+++++|+++ .+|.           .+.  +.|+. ++++|.+.+..|..+..+++|++|++++|.+.+..+..|  
T Consensus        14 ~~~l~~~~n~l~-~iP~-----------~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~--   77 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPA-----------GIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVF--   77 (174)
T ss_dssp             SSEEECCSSCCS-SCCS-----------CCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--
T ss_pred             CcEEEeCCCCCC-ccCC-----------CcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHh--
Confidence            367899999987 4554           332  67777 899999987778888899999999999998886555566  


Q ss_pred             ccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCCh
Q 039018           91 FSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPA  153 (181)
Q Consensus        91 ~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~  153 (181)
                           ..+.+|+.|++++|++++..+..+..+            ++|++|++++|.+. ..+.
T Consensus        78 -----~~l~~L~~L~L~~N~l~~l~~~~~~~l------------~~L~~L~L~~N~~~-c~~~  122 (174)
T 2r9u_A           78 -----DKLTQLTQLDLNDNHLKSIPRGAFDNL------------KSLTHIYLYNNPWD-CECR  122 (174)
T ss_dssp             -----TTCTTCCEEECCSSCCCCCCTTTTTTC------------TTCSEEECCSSCBC-TTBG
T ss_pred             -----CCcchhhEEECCCCccceeCHHHhccc------------cCCCEEEeCCCCcc-cccc
Confidence                 788999999999999984333446664            44889999999887 4444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.49  E-value=1e-13  Score=96.48  Aligned_cols=102  Identities=19%  Similarity=0.246  Sum_probs=86.0

Q ss_pred             ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccccc
Q 039018           50 SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVG  129 (181)
Q Consensus        50 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~  129 (181)
                      ++++|.+. .+|..+.  ++|++|++++|.+.+..|..+       ..+++|+.|++++|++++..+..+..        
T Consensus        18 ~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~-------~~l~~L~~L~Ls~N~l~~i~~~~~~~--------   79 (174)
T 2r9u_A           18 NCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVF-------DHLVNLQQLYFNSNKLTAIPTGVFDK--------   79 (174)
T ss_dssp             ECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTT-------TTCTTCCEEECCSSCCCCCCTTTTTT--------
T ss_pred             EeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHh-------cCCcCCCEEECCCCCCCccChhHhCC--------
Confidence            78899887 7787664  899999999999998878888       89999999999999999443344566        


Q ss_pred             ccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccc
Q 039018          130 YTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE  174 (181)
Q Consensus       130 ~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~  174 (181)
                          +++|++|++++|+++ .+|...+..+++|+.|+|++|.+..
T Consensus        80 ----l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           80 ----LTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             ----CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ----cchhhEEECCCCccc-eeCHHHhccccCCCEEEeCCCCccc
Confidence                445999999999999 5666534999999999999999984

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=1.4e-13  Score=95.74  Aligned_cols=112  Identities=16%  Similarity=0.071  Sum_probs=91.4

Q ss_pred             ccccccchh-ccccccccCCCCcccCCCC-CCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCch
Q 039018           41 LGNLTSLKH-SISYNVLEGKLPTSFGRLR-EPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPAC  118 (181)
Q Consensus        41 l~~l~~L~~-~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~  118 (181)
                      +.++.+|+. ++++|.+. .++. +..+. +|++|++++|.+.+.  ..+       ..+++|+.|++++|.+++..+..
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l-------~~l~~L~~L~Ls~N~l~~~~~~~   83 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGF-------PLLRRLKTLLVNNNRICRIGEGL   83 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCC-------CCCSSCCEEECCSSCCCEECSCH
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--ccc-------ccCCCCCEEECCCCcccccCcch
Confidence            567888899 99999999 5555 55544 999999999998864  556       88999999999999999443344


Q ss_pred             hhcccccccccccccCCcccEEEccCCccccCCCh--hHHHhcccCCEeEecCCcccccCCC
Q 039018          119 ISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPA--ELVTDLVALRSLNLFHNHFKEKFPG  178 (181)
Q Consensus       119 ~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~--~~~~~l~~L~~L~L~~n~l~~~~p~  178 (181)
                      +..+            ++|++|++++|.+. .+|.  .+ ..+++|+.|++++|.++ .+|.
T Consensus        84 ~~~l------------~~L~~L~L~~N~i~-~~~~~~~l-~~l~~L~~L~l~~N~i~-~~~~  130 (176)
T 1a9n_A           84 DQAL------------PDLTELILTNNSLV-ELGDLDPL-ASLKSLTYLCILRNPVT-NKKH  130 (176)
T ss_dssp             HHHC------------TTCCEEECCSCCCC-CGGGGGGG-GGCTTCCEEECCSSGGG-GSTT
T ss_pred             hhcC------------CCCCEEECCCCcCC-cchhhHhh-hcCCCCCEEEecCCCCC-CcHh
Confidence            5764            45999999999997 6776  56 89999999999999998 5665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.48  E-value=8.5e-15  Score=112.96  Aligned_cols=157  Identities=18%  Similarity=0.123  Sum_probs=91.0

Q ss_pred             CCcCCCeeeccCcccccccCccccccccccCCcccccc-cchh-ccccccccCCCCcccCCC-----CCCcEEEcCCCcc
Q 039018            8 NLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLT-SLKH-SISYNVLEGKLPTSFGRL-----REPRSISLSWANK   80 (181)
Q Consensus         8 ~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~-~L~~-~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~n~~   80 (181)
                      ..++|+.|++++|.+.+..+..+       ...+..++ +|++ ++++|.+.+..+..+..+     ++|++|++++|.+
T Consensus        20 ~~~~L~~L~Ls~n~l~~~~~~~l-------~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l   92 (362)
T 3goz_A           20 IPHGVTSLDLSLNNLYSISTVEL-------IQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL   92 (362)
T ss_dssp             SCTTCCEEECTTSCGGGSCHHHH-------HHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred             CCCCceEEEccCCCCChHHHHHH-------HHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence            34457888888888774444211       13345555 6666 777777765555555543     6777777777776


Q ss_pred             cccchhHhhhccCCCCCC-CCccEEEcccccceeecCchhhc-----cccccc-ccccc---------------cC-Ccc
Q 039018           81 SQEILEIFHSFSRDNWTL-RSLQILDIACNNLSGAIPACISN-----SSARKE-VGYTS---------------IL-NLL  137 (181)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~i~~~~p~~~~~-----~~~l~~-~~~~n---------------~l-~~L  137 (181)
                      ....+..+....   ..+ .+|+.|++++|.+++..+..+..     .++|++ .+.+|               .. ++|
T Consensus        93 ~~~~~~~l~~~l---~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L  169 (362)
T 3goz_A           93 SYKSSDELVKTL---AAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV  169 (362)
T ss_dssp             GGSCHHHHHHHH---HTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             ChHHHHHHHHHH---HhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccc
Confidence            655554331110   233 56777777777766443333332     245666 44444               12 267


Q ss_pred             cEEEccCCccccCCChhHH---Hhc-ccCCEeEecCCcccc
Q 039018          138 RITDRSKNNFSGVLPAELV---TDL-VALRSLNLFHNHFKE  174 (181)
Q Consensus       138 ~~l~l~~n~~~~~~p~~~~---~~l-~~L~~L~L~~n~l~~  174 (181)
                      ++|++++|.+++..+..+.   ..+ ++|+.|+|++|.+++
T Consensus       170 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             cEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence            7888888877755554431   223 477888888877764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.48  E-value=6.3e-16  Score=122.35  Aligned_cols=130  Identities=17%  Similarity=0.080  Sum_probs=86.9

Q ss_pred             ccccchh-ccccccccCC----CCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceee---
Q 039018           43 NLTSLKH-SISYNVLEGK----LPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGA---  114 (181)
Q Consensus        43 ~l~~L~~-~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~---  114 (181)
                      .+++|+. ++++|.++..    ++..+..+++|++|++++|.+....+..+.....  ...++|+.|++++|.+++.   
T Consensus       254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~--~~~~~L~~L~L~~n~l~~~~~~  331 (461)
T 1z7x_W          254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL--EPGCQLESLWVKSCSFTAACCS  331 (461)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT--STTCCCCEEECTTSCCBGGGHH
T ss_pred             CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc--cCCccceeeEcCCCCCchHHHH
Confidence            3556666 6777666632    4455555677777777777665443333311100  1235788888888877643   


Q ss_pred             -cCchhhccccccc-ccccc----------------cCCcccEEEccCCcccc----CCChhHHHhcccCCEeEecCCcc
Q 039018          115 -IPACISNSSARKE-VGYTS----------------ILNLLRITDRSKNNFSG----VLPAELVTDLVALRSLNLFHNHF  172 (181)
Q Consensus       115 -~p~~~~~~~~l~~-~~~~n----------------~l~~L~~l~l~~n~~~~----~~p~~~~~~l~~L~~L~L~~n~l  172 (181)
                       ++..+..+++|++ .+.+|                ..++|++|++++|.+++    .+|..+ ..+++|+.|++++|.+
T Consensus       332 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~l~~N~i  410 (461)
T 1z7x_W          332 HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL-LANHSLRELDLSNNCL  410 (461)
T ss_dssp             HHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH-HHCCCCCEEECCSSSC
T ss_pred             HHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHH-HhCCCccEEECCCCCC
Confidence             4556677788888 55555                15689999999999885    567666 7889999999999998


Q ss_pred             ccc
Q 039018          173 KEK  175 (181)
Q Consensus       173 ~~~  175 (181)
                      ++.
T Consensus       411 ~~~  413 (461)
T 1z7x_W          411 GDA  413 (461)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            753

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.48  E-value=1.4e-13  Score=113.09  Aligned_cols=75  Identities=24%  Similarity=0.236  Sum_probs=57.9

Q ss_pred             CCCccEEEcccccceeecCchhhccccccc-ccccc-------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecC
Q 039018           98 LRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFH  169 (181)
Q Consensus        98 ~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~  169 (181)
                      +++|+.|++++|.++ .+|   ..+++|++ .+.+|       .+++|+.|++++|.++ .+|..+ ..+++|+.|+|++
T Consensus       220 ~~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~-~lp~~l-~~l~~L~~L~L~~  293 (622)
T 3g06_A          220 PSGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESL-IHLSSETTVNLEG  293 (622)
T ss_dssp             CTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCC-SCCGGG-GGSCTTCEEECCS
T ss_pred             CCCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCC-cCCHHH-hhccccCEEEecC
Confidence            367888888888887 456   33455666 45555       3466999999999999 889887 9999999999999


Q ss_pred             CcccccCCC
Q 039018          170 NHFKEKFPG  178 (181)
Q Consensus       170 n~l~~~~p~  178 (181)
                      |.+++..|.
T Consensus       294 N~l~~~~~~  302 (622)
T 3g06_A          294 NPLSERTLQ  302 (622)
T ss_dssp             CCCCHHHHH
T ss_pred             CCCCCcCHH
Confidence            999876554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.45  E-value=7.8e-15  Score=116.07  Aligned_cols=159  Identities=18%  Similarity=0.141  Sum_probs=96.0

Q ss_pred             CCCCcCCCeeeccCcccccccCccccccccccCCcccccc-cchh-ccccccccC----CCCcccCCCCCCcEEEcCCCc
Q 039018            6 PENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLT-SLKH-SISYNVLEG----KLPTSFGRLREPRSISLSWAN   79 (181)
Q Consensus         6 ~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~-~L~~-~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~   79 (181)
                      +..+++|+.|++++|.+.+..+..+       ...+.... +|++ ++++|.+..    .++..+..+++|++|++++|.
T Consensus        52 l~~~~~L~~L~Ls~n~l~~~~~~~l-------~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~  124 (461)
T 1z7x_W           52 LRVNPALAELNLRSNELGDVGVHCV-------LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  124 (461)
T ss_dssp             HHTCTTCCEEECTTCCCHHHHHHHH-------HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             HHhCCCcCEEeCCCCcCChHHHHHH-------HHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc
Confidence            3445666666666666653333211       11111111 5777 788887773    346677778888888888887


Q ss_pred             ccccchhHhhhccCCCCCCCCccEEEcccccceee----cCchhhccccccc-ccccc----------------cCCccc
Q 039018           80 KSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGA----IPACISNSSARKE-VGYTS----------------ILNLLR  138 (181)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~----~p~~~~~~~~l~~-~~~~n----------------~l~~L~  138 (181)
                      +....+..+.....  ....+|+.|++++|.+++.    ++..+..+++|++ .+.+|                ..++|+
T Consensus       125 i~~~~~~~l~~~l~--~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~  202 (461)
T 1z7x_W          125 LGDAGLQLLCEGLL--DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE  202 (461)
T ss_dssp             CHHHHHHHHHHHHT--STTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCC
T ss_pred             CchHHHHHHHHHHh--cCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCce
Confidence            76544443311000  2345688888888877642    3455666677777 45554                144788


Q ss_pred             EEEccCCccccC----CChhHHHhcccCCEeEecCCcccc
Q 039018          139 ITDRSKNNFSGV----LPAELVTDLVALRSLNLFHNHFKE  174 (181)
Q Consensus       139 ~l~l~~n~~~~~----~p~~~~~~l~~L~~L~L~~n~l~~  174 (181)
                      +|++++|.+++.    ++..+ ..+++|+.|++++|.+++
T Consensus       203 ~L~L~~n~l~~~~~~~l~~~l-~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          203 ALKLESCGVTSDNCRDLCGIV-ASKASLRELALGSNKLGD  241 (461)
T ss_dssp             EEECTTSCCBTTHHHHHHHHH-HHCTTCCEEECCSSBCHH
T ss_pred             EEEccCCCCcHHHHHHHHHHH-HhCCCccEEeccCCcCCh
Confidence            888888877742    34444 667778888888777653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.42  E-value=2e-12  Score=106.24  Aligned_cols=124  Identities=21%  Similarity=0.234  Sum_probs=62.5

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK   80 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (181)
                      +|..+.  ++|+.|++++|.++ .+|.              .+++|++ ++++|.++ .+|.   .+++|++|++++|.+
T Consensus        55 lp~~l~--~~L~~L~L~~N~l~-~lp~--------------~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l  113 (622)
T 3g06_A           55 LPDCLP--AHITTLVIPDNNLT-SLPA--------------LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPL  113 (622)
T ss_dssp             CCSCCC--TTCSEEEECSCCCS-CCCC--------------CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCC
T ss_pred             cChhhC--CCCcEEEecCCCCC-CCCC--------------cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcC
Confidence            555554  67777777777776 3332              2445555 66666665 3443   455666666666655


Q ss_pred             cccchhHhh---hc-------cCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-------cCCcccEEEc
Q 039018           81 SQEILEIFH---SF-------SRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-------ILNLLRITDR  142 (181)
Q Consensus        81 ~~~~~~~~~---~~-------~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-------~l~~L~~l~l  142 (181)
                      .+. |..+.   .+       ..-...+++|+.|++++|.++ .+|..+.   +|+. .+.+|       .+++|+.|++
T Consensus       114 ~~l-~~~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~-~l~~~~~---~L~~L~L~~N~l~~l~~~~~~L~~L~L  188 (622)
T 3g06_A          114 THL-PALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA-SLPALPS---ELCKLWAYNNQLTSLPMLPSGLQELSV  188 (622)
T ss_dssp             CCC-CCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCCCCT---TCCEEECCSSCCSCCCCCCTTCCEEEC
T ss_pred             CCC-CCCCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCC-CcCCccC---CCCEEECCCCCCCCCcccCCCCcEEEC
Confidence            431 11110   00       000012356666677666665 3444322   2223 22222       2355677777


Q ss_pred             cCCccccCCC
Q 039018          143 SKNNFSGVLP  152 (181)
Q Consensus       143 ~~n~~~~~~p  152 (181)
                      ++|.++ .+|
T Consensus       189 s~N~l~-~l~  197 (622)
T 3g06_A          189 SDNQLA-SLP  197 (622)
T ss_dssp             CSSCCS-CCC
T ss_pred             CCCCCC-CCC
Confidence            777766 344

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.38  E-value=2.3e-12  Score=98.62  Aligned_cols=103  Identities=17%  Similarity=0.139  Sum_probs=78.0

Q ss_pred             eeeccCc-ccccccCccccccccccCCcccccccchh-cccc-ccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhh
Q 039018           14 YLDLSDN-QFNSTIPEWISRINCTISSGLGNLTSLKH-SISY-NVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHS   90 (181)
Q Consensus        14 ~L~ls~n-~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~   90 (181)
                      .++++++ +++            .+|. +..+++|+. ++++ |.+.+..+..|..+++|+.|++++|.+.+..|..|  
T Consensus        12 ~v~~~~~n~l~------------~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--   76 (347)
T 2ifg_A           12 GLRCTRDGALD------------SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF--   76 (347)
T ss_dssp             CEECCSSCCCT------------TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGG--
T ss_pred             EEEcCCCCCCC------------ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHh--
Confidence            4688887 777            4445 677788888 8885 88886666778888889999998888888777788  


Q ss_pred             ccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCcccc
Q 039018           91 FSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSG  149 (181)
Q Consensus        91 ~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~  149 (181)
                           ..+++|+.|+|++|+++ .+|......           +. |+.|++.+|.+..
T Consensus        77 -----~~l~~L~~L~l~~N~l~-~~~~~~~~~-----------~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           77 -----HFTPRLSRLNLSFNALE-SLSWKTVQG-----------LS-LQELVLSGNPLHC  117 (347)
T ss_dssp             -----GSCSCCCEEECCSSCCS-CCCSTTTCS-----------CC-CCEEECCSSCCCC
T ss_pred             -----cCCcCCCEEeCCCCccc-eeCHHHccc-----------CC-ceEEEeeCCCccC
Confidence                 88888888999988888 455433321           22 8888888888873

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.34  E-value=3.7e-12  Score=97.43  Aligned_cols=101  Identities=19%  Similarity=0.139  Sum_probs=71.7

Q ss_pred             ccccc-cccCCCCcccCCCCCCcEEEcCC-CcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc
Q 039018           50 SISYN-VLEGKLPTSFGRLREPRSISLSW-ANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE  127 (181)
Q Consensus        50 ~l~~n-~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~  127 (181)
                      +.+++ .+. .+|. +..+++|+.|++++ |.+.+..+..|       ..+.+|+.|+|++|++++..|..|..++    
T Consensus        14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~-------~~l~~L~~L~l~~N~l~~~~~~~~~~l~----   80 (347)
T 2ifg_A           14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDL-------RGLGELRNLTIVKSGLRFVAPDAFHFTP----   80 (347)
T ss_dssp             ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGS-------CSCCCCSEEECCSSCCCEECTTGGGSCS----
T ss_pred             EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHh-------ccccCCCEEECCCCccceeCHHHhcCCc----
Confidence            55555 666 5677 77777888888875 77776666667       7788888888888888766666677643    


Q ss_pred             ccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCccc
Q 039018          128 VGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK  173 (181)
Q Consensus       128 ~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~  173 (181)
                              +|++|+|++|+++ .+|..+|..++ |+.|+|.+|.+.
T Consensus        81 --------~L~~L~l~~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           81 --------RLSRLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             --------CCCEEECCSSCCS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             --------CCCEEeCCCCccc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence                    4778888888887 45554435454 788888887776

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.20  E-value=2.6e-12  Score=99.53  Aligned_cols=41  Identities=17%  Similarity=0.195  Sum_probs=30.4

Q ss_pred             CCcccEEEccCCccccCCChhHH---HhcccCCEeEecCCcccc
Q 039018          134 LNLLRITDRSKNNFSGVLPAELV---TDLVALRSLNLFHNHFKE  174 (181)
Q Consensus       134 l~~L~~l~l~~n~~~~~~p~~~~---~~l~~L~~L~L~~n~l~~  174 (181)
                      .++|+.|++++|.+++.....+.   ...+.|+.|+|++|.+++
T Consensus       210 ~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            45699999999999753222221   456889999999999874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.10  E-value=2.2e-11  Score=99.10  Aligned_cols=156  Identities=12%  Similarity=0.069  Sum_probs=91.7

Q ss_pred             CCcCCCeeeccCcccccccCccccc--------cc---------cccCCcccccccchh-ccccccccCC----CCcccC
Q 039018            8 NLSSLRYLDLSDNQFNSTIPEWISR--------IN---------CTISSGLGNLTSLKH-SISYNVLEGK----LPTSFG   65 (181)
Q Consensus         8 ~l~~L~~L~ls~n~i~~~~p~~~~~--------~~---------~~l~~~l~~l~~L~~-~l~~n~~~~~----~~~~~~   65 (181)
                      .+++|+.|++++|.+.+..+..+..        +.         ..++.....+++|++ ++++|.+.+.    ++..+.
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            5788999999988876544433321        00         011112235677888 8888877644    222345


Q ss_pred             CCCCCcEEEcCCCccc----ccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccccccc-c--------
Q 039018           66 RLREPRSISLSWANKS----QEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYT-S--------  132 (181)
Q Consensus        66 ~l~~L~~L~l~~n~~~----~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~-n--------  132 (181)
                      .+++|+.|++++|.+.    ..++..+       ..+++|+.|++++|.+. .+|..+..+++|++.... .        
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~-------~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~  261 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIA-------RNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPE  261 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHH-------HHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTT
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHH-------hhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHH
Confidence            6788888888888776    2334444       56788999999888877 466667777777662111 0        


Q ss_pred             ------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCccc
Q 039018          133 ------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK  173 (181)
Q Consensus       133 ------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~  173 (181)
                            .+++|+.++++++... .+|..+ ..+++|++|++++|.++
T Consensus       262 ~~~~l~~~~~L~~L~l~~~~~~-~l~~~~-~~~~~L~~L~Ls~~~l~  306 (592)
T 3ogk_B          262 KYMNLVFPRKLCRLGLSYMGPN-EMPILF-PFAAQIRKLDLLYALLE  306 (592)
T ss_dssp             SSSCCCCCTTCCEEEETTCCTT-TGGGGG-GGGGGCCEEEETTCCCC
T ss_pred             HHHHhhccccccccCccccchh-HHHHHH-hhcCCCcEEecCCCcCC
Confidence                  3344555555543222 344433 55555666666555543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.05  E-value=2.2e-11  Score=99.08  Aligned_cols=42  Identities=24%  Similarity=0.053  Sum_probs=32.7

Q ss_pred             CCcccEEEccCCccccCCChhHHHhcccCCEeEecCCccccc
Q 039018          134 LNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEK  175 (181)
Q Consensus       134 l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~  175 (181)
                      +++|++|++++|.+++.....++..+++|+.|++++|.+++.
T Consensus       487 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          487 CPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             CTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             CcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            566999999999887543444447889999999999998865

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.02  E-value=1.1e-09  Score=83.22  Aligned_cols=74  Identities=11%  Similarity=-0.014  Sum_probs=45.4

Q ss_pred             CCCccEEEcccccceeecCchhhccccccc-ccccc----------cCCccc-EEEccCCccccCCChhHHHhcccCCEe
Q 039018           98 LRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS----------ILNLLR-ITDRSKNNFSGVLPAELVTDLVALRSL  165 (181)
Q Consensus        98 ~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n----------~l~~L~-~l~l~~n~~~~~~p~~~~~~l~~L~~L  165 (181)
                      +.+|+.+++++|.++..-+..|..+.+|++ .+..|          .+.+|+ .+++.. .++ .+++..|..|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEE
Confidence            455666666666665333344555555555 22222          455677 888877 555 4444444888888888


Q ss_pred             EecCCccc
Q 039018          166 NLFHNHFK  173 (181)
Q Consensus       166 ~L~~n~l~  173 (181)
                      +++.|.++
T Consensus       303 ~l~~n~i~  310 (329)
T 3sb4_A          303 LATGDKIT  310 (329)
T ss_dssp             EECSSCCC
T ss_pred             EeCCCccC
Confidence            88888877

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.99  E-value=1.7e-11  Score=94.92  Aligned_cols=144  Identities=17%  Similarity=0.153  Sum_probs=98.1

Q ss_pred             CcCCCeeeccCcccccccCccccccccccCCccc-ccccchh-ccccccccCCCCccc-CCCCCCcEEEcCCCcccccch
Q 039018            9 LSSLRYLDLSDNQFNSTIPEWISRINCTISSGLG-NLTSLKH-SISYNVLEGKLPTSF-GRLREPRSISLSWANKSQEIL   85 (181)
Q Consensus         9 l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~-~l~~L~~-~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~   85 (181)
                      +++|+.|++++|.+.......+       ...+. ....|++ ++++|.++......+ ..+++|+.|++++|.+.....
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l-------~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~  143 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVV-------AAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC  143 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHH-------HHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHH-------HHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH
Confidence            3578999999999984433322       12222 2368888 999999874432233 235689999999999875544


Q ss_pred             hHhhhccCCCCCCCCccEEEcccccceee----cCchhhcccccccccccccCCcccEEEccCCccccCC----ChhHHH
Q 039018           86 EIFHSFSRDNWTLRSLQILDIACNNLSGA----IPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVL----PAELVT  157 (181)
Q Consensus        86 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~----~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~----p~~~~~  157 (181)
                      ..+.....  ....+|+.|++++|.++..    ++..+..            .++|++|++++|.+++..    +..+ .
T Consensus       144 ~~L~~~L~--~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~------------~~~L~~L~Ls~N~l~~~g~~~L~~~L-~  208 (372)
T 3un9_A          144 KDLRDLLL--HDQCQITTLRLSNNPLTAAGVAVLMEGLAG------------NTSVTHLSLLHTGLGDEGLELLAAQL-D  208 (372)
T ss_dssp             HHHHHHHH--STTCCCCEEECCSSCCHHHHHHHHHHHHHT------------CSSCCEEECTTSSCHHHHHHHHHHHG-G
T ss_pred             HHHHHHHH--hcCCccceeeCCCCCCChHHHHHHHHHHhc------------CCCcCEEeCCCCCCCcHHHHHHHHHH-h
Confidence            44421110  2457899999999998742    3333344            455999999999998532    3334 5


Q ss_pred             hcccCCEeEecCCcccc
Q 039018          158 DLVALRSLNLFHNHFKE  174 (181)
Q Consensus       158 ~l~~L~~L~L~~n~l~~  174 (181)
                      ..++|+.|+|++|.+++
T Consensus       209 ~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          209 RNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             GCSCCCEEECCSSCCCH
T ss_pred             cCCCcCeEECCCCCCCH
Confidence            67789999999999974

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.99  E-value=1.7e-09  Score=82.13  Aligned_cols=91  Identities=18%  Similarity=0.073  Sum_probs=56.7

Q ss_pred             CCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccc-cc-cccc----------cC
Q 039018           67 LREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARK-EV-GYTS----------IL  134 (181)
Q Consensus        67 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~-~~-~~~n----------~l  134 (181)
                      +++|+.+++++|.+.......|       ..+.+|+.+++..| ++..-+..|..+.+|+ .+ +-.+          .+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF-------~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c  296 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTF-------AQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGC  296 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTT-------TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTC
T ss_pred             cCCCeEEECCCCCcceecHhhh-------hCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcccceEEchhhhhCC
Confidence            4556666666555554444445       55666666666655 4433344555666555 41 1111          46


Q ss_pred             CcccEEEccCCccccCCChhHHHhcccCCEeE
Q 039018          135 NLLRITDRSKNNFSGVLPAELVTDLVALRSLN  166 (181)
Q Consensus       135 ~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~  166 (181)
                      ++|+.++++.|.++ .++...|.++++|+.+.
T Consensus       297 ~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          297 DNLRYVLATGDKIT-TLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TTEEEEEECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred             ccCCEEEeCCCccC-ccchhhhcCCcchhhhc
Confidence            67999999999998 56655559999999876

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.84  E-value=5.9e-10  Score=90.63  Aligned_cols=62  Identities=13%  Similarity=0.106  Sum_probs=32.7

Q ss_pred             CCcCCCeeeccCc-ccccccCccccccccccCCcccccccchh-ccccccccCCCCccc----CCCCCCcEEEcCCCc
Q 039018            8 NLSSLRYLDLSDN-QFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSF----GRLREPRSISLSWAN   79 (181)
Q Consensus         8 ~l~~L~~L~ls~n-~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~----~~l~~L~~L~l~~n~   79 (181)
                      .+++|+.|++++| .+.+...          +..+..+++|++ ++++|.+.+..+..+    ..+++|+.|++++|.
T Consensus       128 ~~~~L~~L~L~~~~~~~~~~l----------~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          128 SFKNFKVLVLSSCEGFSTDGL----------AAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA  195 (594)
T ss_dssp             HCTTCCEEEEESCEEEEHHHH----------HHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred             hCCCCcEEeCCCcCCCCHHHH----------HHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence            3567777777776 3432111          112235666666 666666554332222    245566777766664

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.77  E-value=1.2e-09  Score=88.78  Aligned_cols=89  Identities=19%  Similarity=0.165  Sum_probs=54.0

Q ss_pred             CCCCCCcEEEcCCCcccccchhHhhhccCCCCC-CCCccEEEcccccceeecCchh-hcccccccccccccCCcccEEEc
Q 039018           65 GRLREPRSISLSWANKSQEILEIFHSFSRDNWT-LRSLQILDIACNNLSGAIPACI-SNSSARKEVGYTSILNLLRITDR  142 (181)
Q Consensus        65 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~n~i~~~~p~~~-~~~~~l~~~~~~n~l~~L~~l~l  142 (181)
                      ..+++|+.|++++ .+.......+       .. +++|+.|++++|.+++..+..+ ..            +++|+.|++
T Consensus       429 ~~~~~L~~L~L~~-~l~~~~~~~l-------~~~~~~L~~L~L~~~~i~~~~~~~l~~~------------~~~L~~L~L  488 (594)
T 2p1m_B          429 EHCKDLRRLSLSG-LLTDKVFEYI-------GTYAKKMEMLSVAFAGDSDLGMHHVLSG------------CDSLRKLEI  488 (594)
T ss_dssp             HHCTTCCEEECCS-SCCHHHHHHH-------HHHCTTCCEEEEESCCSSHHHHHHHHHH------------CTTCCEEEE
T ss_pred             hhCCCccEEeecC-cccHHHHHHH-------HHhchhccEeeccCCCCcHHHHHHHHhc------------CCCcCEEEC
Confidence            4455666666654 3333333333       22 5667777777766654333332 23            456888899


Q ss_pred             cCCccccCCChhHHHhcccCCEeEecCCccc
Q 039018          143 SKNNFSGVLPAELVTDLVALRSLNLFHNHFK  173 (181)
Q Consensus       143 ~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~  173 (181)
                      ++|.+++..+..++..+++|+.|++++|.++
T Consensus       489 ~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          489 RDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             ESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             cCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            8888864434334356888899999888875

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.74  E-value=1.4e-09  Score=83.83  Aligned_cols=41  Identities=20%  Similarity=0.181  Sum_probs=29.9

Q ss_pred             CCcccEEEccCCccccCCChhHH---HhcccCCEeEecCCcccc
Q 039018          134 LNLLRITDRSKNNFSGVLPAELV---TDLVALRSLNLFHNHFKE  174 (181)
Q Consensus       134 l~~L~~l~l~~n~~~~~~p~~~~---~~l~~L~~L~L~~n~l~~  174 (181)
                      ++.|++|+++.|.+.+..+..+.   ..+++|+.|+|++|.++.
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            56789999999888754333332   457889999999888764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.66  E-value=1.6e-09  Score=75.88  Aligned_cols=118  Identities=9%  Similarity=0.046  Sum_probs=69.9

Q ss_pred             ccccccchh-ccccc-cccCC----CCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceee
Q 039018           41 LGNLTSLKH-SISYN-VLEGK----LPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGA  114 (181)
Q Consensus        41 l~~l~~L~~-~l~~n-~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~  114 (181)
                      +...+.|++ ++++| .+...    +...+...++|++|++++|.+.......+.+.   +....+|+.|++++|.++..
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~---L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEM---LKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHH---HHHCSSCCEEECCSSCCCHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHH---HHhCCCcCEEECcCCcCCHH
Confidence            344555655 66665 55422    33445556778888888888764332222111   14557788888888887643


Q ss_pred             c----CchhhcccccccccccccCCcccEEEc--cCCccccCCChhHH---HhcccCCEeEecCCccc
Q 039018          115 I----PACISNSSARKEVGYTSILNLLRITDR--SKNNFSGVLPAELV---TDLVALRSLNLFHNHFK  173 (181)
Q Consensus       115 ~----p~~~~~~~~l~~~~~~n~l~~L~~l~l--~~n~~~~~~p~~~~---~~l~~L~~L~L~~n~l~  173 (181)
                      -    ...+..            .++|++|++  ++|.+.......+.   ...+.|+.|+|++|.+.
T Consensus       109 g~~~l~~~L~~------------n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          109 GILALVEALQS------------NTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHGGGG------------CSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHh------------CCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            2    222333            345888888  77888754222221   44577888888888765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.65  E-value=2.8e-07  Score=72.02  Aligned_cols=156  Identities=12%  Similarity=0.058  Sum_probs=83.2

Q ss_pred             CCCCCCcCCCeeeccCcccccccCccccc------------cccccCCcccccccchh-ccccccccCCCCcccCCCCCC
Q 039018            4 NGPENLSSLRYLDLSDNQFNSTIPEWISR------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREP   70 (181)
Q Consensus         4 ~~~~~l~~L~~L~ls~n~i~~~~p~~~~~------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L   70 (181)
                      .+|.+|++|+.+++.+|.++ .+++....            +...-...|.++.+|+. .+..+ +...-...|.+ .+|
T Consensus       174 ~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L  250 (401)
T 4fdw_A          174 DIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGI  250 (401)
T ss_dssp             STTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCC
T ss_pred             HHhhCcccCCeeecCCCcce-EechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCc
Confidence            46788899999999988887 34332211            00000112333444444 33332 11111222222 334


Q ss_pred             cEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccce-----eecCchhhcccccccc-cccc----------cC
Q 039018           71 RSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLS-----GAIPACISNSSARKEV-GYTS----------IL  134 (181)
Q Consensus        71 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~-----~~~p~~~~~~~~l~~~-~~~n----------~l  134 (181)
                      +.+.+. +.+.......|       ..+.+|+.+.+.+|.+.     ..-+..|..|.+|+.+ +-.+          .+
T Consensus       251 ~~i~lp-~~i~~I~~~aF-------~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c  322 (401)
T 4fdw_A          251 TTVKLP-NGVTNIASRAF-------YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGN  322 (401)
T ss_dssp             SEEEEE-TTCCEECTTTT-------TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTC
T ss_pred             cEEEeC-CCccEEChhHh-------hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCC
Confidence            444442 22222223334       67777888877776543     2344567777777662 2222          56


Q ss_pred             CcccEEEccCCccccCCChhHHHhcccCCEeEecCCccc
Q 039018          135 NLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK  173 (181)
Q Consensus       135 ~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~  173 (181)
                      .+|+.+.+..+ ++ .+....|..+ +|+.+.+.+|.+.
T Consensus       323 ~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          323 RKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             CSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSSCC
T ss_pred             CCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCCc
Confidence            67888888555 44 3443334778 8888888888766

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.60  E-value=1e-07  Score=70.41  Aligned_cols=82  Identities=18%  Similarity=0.193  Sum_probs=57.1

Q ss_pred             CCCCCcEEEcCCCcccc--cchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEcc
Q 039018           66 RLREPRSISLSWANKSQ--EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRS  143 (181)
Q Consensus        66 ~l~~L~~L~l~~n~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~  143 (181)
                      .+++|+.|++++|.+.+  .++..+       ..+++|+.|+|++|.+++.  ..+..++.         + +|+.|+++
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~-------~~l~~L~~L~Ls~N~i~~~--~~l~~l~~---------l-~L~~L~L~  228 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIV-------QKAPNLKILNLSGNELKSE--RELDKIKG---------L-KLEELWLD  228 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHH-------HHSTTCCEEECTTSCCCSG--GGGGGGTT---------S-CCSEEECT
T ss_pred             hCCCCCEEECCCCCCCCCccchhHH-------hhCCCCCEEECCCCccCCc--hhhhhccc---------C-CcceEEcc
Confidence            46788888888888876  344555       6778888888888888733  33444332         2 58888888


Q ss_pred             CCccccCCCh------hHHHhcccCCEeE
Q 039018          144 KNNFSGVLPA------ELVTDLVALRSLN  166 (181)
Q Consensus       144 ~n~~~~~~p~------~~~~~l~~L~~L~  166 (181)
                      +|.+++.+|.      .++..+++|+.||
T Consensus       229 ~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          229 GNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             TSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             CCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            8888765552      2347788888877

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.59  E-value=9.8e-09  Score=71.83  Aligned_cols=125  Identities=15%  Similarity=0.021  Sum_probs=84.1

Q ss_pred             CCCCcCCCeeeccCc-ccccccCccccccccccCCcccccccchh-ccccccccCC----CCcccCCCCCCcEEEcCCCc
Q 039018            6 PENLSSLRYLDLSDN-QFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGK----LPTSFGRLREPRSISLSWAN   79 (181)
Q Consensus         6 ~~~l~~L~~L~ls~n-~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~   79 (181)
                      +...+.|+.|++++| .+...-..       .+...+...++|++ ++++|.+...    +...+...++|++|++++|.
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~-------~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLK-------ACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHH-------HHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHH-------HHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence            456788999999999 88743333       23345666788989 9999998743    33445566889999999999


Q ss_pred             ccccchhHhhhccCCCCCCCCccEEEc--ccccceeecCchhhcccccccccccccCCcccEEEccCCccc
Q 039018           80 KSQEILEIFHSFSRDNWTLRSLQILDI--ACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFS  148 (181)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~L~~L~l--~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~  148 (181)
                      +.......+   ...+....+|+.|++  ++|.++......+..+-.        ..++|++|++++|.+.
T Consensus       105 i~~~g~~~l---~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~--------~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          105 ISGSGILAL---VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLE--------KNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             CCHHHHHHH---HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHH--------HCSSCCEEECCCSSHH
T ss_pred             CCHHHHHHH---HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHH--------hCCCcCEEeccCCCCC
Confidence            875432222   111266788999999  889887432222221100        0345999999999886

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.37  E-value=3.4e-07  Score=70.53  Aligned_cols=154  Identities=12%  Similarity=0.085  Sum_probs=87.8

Q ss_pred             CCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccc
Q 039018            6 PENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEI   84 (181)
Q Consensus         6 ~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~   84 (181)
                      +.++++|+.|.+.+......--.++  ..+.+...+..++.|+. .+++|.-. .++. +. +++|+.|++..+.+....
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~--~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~  209 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWI--EQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSV  209 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGC--BCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHH
T ss_pred             hhhcchhhheeecCcchhhcccccc--cccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHH
Confidence            4456788888876643321000000  00012233455677888 78776312 2333 33 788999999887765444


Q ss_pred             hhHhhhccCCCCCCCCccEEEccc--ccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHH--hcc
Q 039018           85 LEIFHSFSRDNWTLRSLQILDIAC--NNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVT--DLV  160 (181)
Q Consensus        85 ~~~~~~~~~~~~~~~~L~~L~l~~--n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~--~l~  160 (181)
                      ...+..     ..+++|+.|+|+.  |...+..  .+   ..+...+....+++|++|++.+|.+.+..+..++.  .++
T Consensus       210 l~~l~~-----~~lp~L~~L~L~~~~~~~~~~~--~~---~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~  279 (362)
T 2ra8_A          210 VEDILG-----SDLPNLEKLVLYVGVEDYGFDG--DM---NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP  279 (362)
T ss_dssp             HHHHHH-----SBCTTCCEEEEECBCGGGTCCS--CG---GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGG
T ss_pred             HHHHHH-----ccCCCCcEEEEeccccccccch--hH---HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCC
Confidence            344411     3678999998853  2211110  00   00111111112577999999999987555555532  478


Q ss_pred             cCCEeEecCCcccc
Q 039018          161 ALRSLNLFHNHFKE  174 (181)
Q Consensus       161 ~L~~L~L~~n~l~~  174 (181)
                      +|+.|+|+.|.+++
T Consensus       280 ~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          280 QLETMDISAGVLTD  293 (362)
T ss_dssp             GCSEEECCSSCCBH
T ss_pred             CCCEEECCCCCCCh
Confidence            99999999999875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.27  E-value=1.5e-06  Score=64.20  Aligned_cols=67  Identities=22%  Similarity=0.264  Sum_probs=53.8

Q ss_pred             CCCCCccEEEccccccee--ecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcc--cCCEeEecCCc
Q 039018           96 WTLRSLQILDIACNNLSG--AIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLV--ALRSLNLFHNH  171 (181)
Q Consensus        96 ~~~~~L~~L~l~~n~i~~--~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~--~L~~L~L~~n~  171 (181)
                      ..+++|+.|+|++|++++  .+|..+..            +++|+.|+|++|++.+.  ..+ ..+.  +|+.|+|++|.
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~------------l~~L~~L~Ls~N~i~~~--~~l-~~l~~l~L~~L~L~~Np  231 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQK------------APNLKILNLSGNELKSE--REL-DKIKGLKLEELWLDGNS  231 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHH------------STTCCEEECTTSCCCSG--GGG-GGGTTSCCSEEECTTST
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhh------------CCCCCEEECCCCccCCc--hhh-hhcccCCcceEEccCCc
Confidence            457899999999999986  45566666            45599999999999843  344 5666  89999999999


Q ss_pred             ccccCC
Q 039018          172 FKEKFP  177 (181)
Q Consensus       172 l~~~~p  177 (181)
                      +++.+|
T Consensus       232 l~~~~~  237 (267)
T 3rw6_A          232 LCDTFR  237 (267)
T ss_dssp             TGGGCS
T ss_pred             CccccC
Confidence            998666

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.21  E-value=5.4e-06  Score=64.72  Aligned_cols=117  Identities=3%  Similarity=-0.089  Sum_probs=68.1

Q ss_pred             ccchh-ccccccccCCCCcccCCCCCCcEEEcCCCccc-----ccchhHhhhccCCCCCCCCccEEEcccccceeecCch
Q 039018           45 TSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKS-----QEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPAC  118 (181)
Q Consensus        45 ~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~  118 (181)
                      .+|+. .+.. .+...-...|.++++|+.+++..|.+.     ......|       ..+.+|+.+.+.. .++..-...
T Consensus       248 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF-------~~c~~L~~l~l~~-~i~~I~~~a  318 (401)
T 4fdw_A          248 SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL-------EGCPKLARFEIPE-SIRILGQGL  318 (401)
T ss_dssp             CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT-------TTCTTCCEECCCT-TCCEECTTT
T ss_pred             CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh-------hCCccCCeEEeCC-ceEEEhhhh
Confidence            44555 4532 233234555667777777777665543     2233445       6666777777663 354334455


Q ss_pred             hhcccccccc-cccc----------cCCcccEEEccCCccccCCChhHHHhcc-cCCEeEecCCcc
Q 039018          119 ISNSSARKEV-GYTS----------ILNLLRITDRSKNNFSGVLPAELVTDLV-ALRSLNLFHNHF  172 (181)
Q Consensus       119 ~~~~~~l~~~-~~~n----------~l~~L~~l~l~~n~~~~~~p~~~~~~l~-~L~~L~L~~n~l  172 (181)
                      |..|.+|+.+ +-.+          .+ +|+.+++++|... .++...|..++ .++.+.+..+.+
T Consensus       319 F~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          319 LGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             TTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             hcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCCc-ccccccccCCCCCccEEEeCHHHH
Confidence            6666666662 2211          34 6999999999887 45544446664 677888766543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.19  E-value=1.2e-06  Score=60.48  Aligned_cols=88  Identities=8%  Similarity=-0.039  Sum_probs=44.0

Q ss_pred             CCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEccccc-ceeecCchhhcccccccccccccCCcccEEEccCCc
Q 039018           68 REPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNN-LSGAIPACISNSSARKEVGYTSILNLLRITDRSKNN  146 (181)
Q Consensus        68 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~  146 (181)
                      .+|+.||++++.++...-..+       ..+++|+.|++++|. +++.--..+..+.+        ..++|++|++++|.
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L-------~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~--------~~~~L~~L~Ls~C~  125 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHM-------EGLQYVEKIRLCKCHYIEDGCLERLSQLEN--------LQKSMLEMEIISCG  125 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGG-------TTCSCCCEEEEESCTTCCHHHHHHHHTCHH--------HHHHCCEEEEESCT
T ss_pred             ceEeEEeCcCCCccHHHHHHh-------cCCCCCCEEEeCCCCccCHHHHHHHHhccc--------ccCCCCEEEcCCCC
Confidence            456666666666554443444       566666666666663 44222122222100        01236666666653


Q ss_pred             -cccCCChhHHHhcccCCEeEecCCc
Q 039018          147 -FSGVLPAELVTDLVALRSLNLFHNH  171 (181)
Q Consensus       147 -~~~~~p~~~~~~l~~L~~L~L~~n~  171 (181)
                       +++..-..+ ..+++|+.|+++++.
T Consensus       126 ~ITD~Gl~~L-~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          126 NVTDKGIIAL-HHFRNLKYLFLSDLP  150 (176)
T ss_dssp             TCCHHHHHHG-GGCTTCCEEEEESCT
T ss_pred             cCCHHHHHHH-hcCCCCCEEECCCCC
Confidence             554333344 556666666666543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.79  E-value=1.2e-05  Score=55.56  Aligned_cols=86  Identities=12%  Similarity=0.035  Sum_probs=60.4

Q ss_pred             cccchh-ccccccccCCCCcccCCCCCCcEEEcCCCc-ccccchhHhhhccCCCCCC----CCccEEEccccc-ceeecC
Q 039018           44 LTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWAN-KSQEILEIFHSFSRDNWTL----RSLQILDIACNN-LSGAIP  116 (181)
Q Consensus        44 l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~~~----~~L~~L~l~~n~-i~~~~p  116 (181)
                      -..|+. ++++|.++..--..+..+++|+.|++++|. ++...-..+       ..+    ++|+.|++++|. +++.--
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L-------~~~~~~~~~L~~L~Ls~C~~ITD~Gl  132 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL-------SQLENLQKSMLEMEIISCGNVTDKGI  132 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH-------HTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH-------HhcccccCCCCEEEcCCCCcCCHHHH
Confidence            346777 888888776555667889999999999986 554444455       443    479999999984 764332


Q ss_pred             chhhcccccccccccccCCcccEEEccCCc-cc
Q 039018          117 ACISNSSARKEVGYTSILNLLRITDRSKNN-FS  148 (181)
Q Consensus       117 ~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~-~~  148 (181)
                      ..+..            +++|++|+++++. ++
T Consensus       133 ~~L~~------------~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          133 IALHH------------FRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HHGGG------------CTTCCEEEEESCTTCC
T ss_pred             HHHhc------------CCCCCEEECCCCCCCC
Confidence            33444            5569999999874 44

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.51  E-value=1.1e-05  Score=56.67  Aligned_cols=15  Identities=33%  Similarity=0.521  Sum_probs=7.7

Q ss_pred             CCCccEEEcccccce
Q 039018           98 LRSLQILDIACNNLS  112 (181)
Q Consensus        98 ~~~L~~L~l~~n~i~  112 (181)
                      -..|+.|+|+.|.|+
T Consensus        97 N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           97 SPSLRVLNVESNFLT  111 (197)
T ss_dssp             CSSCCEEECCSSBCC
T ss_pred             CCccCeEecCCCcCC
Confidence            344555555555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.38  E-value=0.00021  Score=46.80  Aligned_cols=37  Identities=27%  Similarity=0.362  Sum_probs=23.5

Q ss_pred             CCccEEEcccccceeecC-chhhcccccccccccccCCcccEEEccCCccc
Q 039018           99 RSLQILDIACNNLSGAIP-ACISNSSARKEVGYTSILNLLRITDRSKNNFS  148 (181)
Q Consensus        99 ~~L~~L~l~~n~i~~~~p-~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~  148 (181)
                      .+++.|+|++|+|+ .+| +.|..            +++|+.|+|++|.+.
T Consensus        31 ~~l~~L~Ls~N~l~-~l~~~~f~~------------l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           31 VDTTELVLTGNNLT-ALPPGLLDA------------LPALRTAHLGANPWR   68 (130)
T ss_dssp             TTCSEEECTTSCCS-SCCTTTGGG------------CTTCCEEECCSSCCB
T ss_pred             cCCCEEECCCCcCC-ccChhhhhh------------ccccCEEEecCCCee
Confidence            46777777777777 444 34444            334777777777665

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.25  E-value=0.0012  Score=51.13  Aligned_cols=10  Identities=20%  Similarity=0.139  Sum_probs=5.0

Q ss_pred             ccEEEccCCc
Q 039018          137 LRITDRSKNN  146 (181)
Q Consensus       137 L~~l~l~~n~  146 (181)
                      |+.+++.++.
T Consensus       359 L~~i~~~~~~  368 (394)
T 4gt6_A          359 LNNIEYSGSR  368 (394)
T ss_dssp             CCEEEESSCH
T ss_pred             CCEEEECCce
Confidence            5555555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.18  E-value=0.0018  Score=50.02  Aligned_cols=84  Identities=13%  Similarity=0.042  Sum_probs=46.1

Q ss_pred             cCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEcc
Q 039018           64 FGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRS  143 (181)
Q Consensus        64 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~  143 (181)
                      +..+.+|+.+.+..+ +.......|       ..+.+|+.+++..+ ++..-..+|..|.            +|+.+++.
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF-------~~c~~L~~i~lp~~-v~~I~~~aF~~c~------------~L~~i~lp  351 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAF-------ESCTSLVSIDLPYL-VEEIGKRSFRGCT------------SLSNINFP  351 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTT-------TTCTTCCEECCCTT-CCEECTTTTTTCT------------TCCEECCC
T ss_pred             ccccccccccccccc-cceechhhh-------cCCCCCCEEEeCCc-ccEEhHHhccCCC------------CCCEEEEC
Confidence            445556666655433 222333344       56666776666543 4423334555544            47777776


Q ss_pred             CCccccCCChhHHHhcccCCEeEecCC
Q 039018          144 KNNFSGVLPAELVTDLVALRSLNLFHN  170 (181)
Q Consensus       144 ~n~~~~~~p~~~~~~l~~L~~L~L~~n  170 (181)
                      .+ ++ .+....|..|.+|+.+++..+
T Consensus       352 ~~-l~-~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          352 LS-LR-KIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TT-CC-EECTTTBTTCTTCCEEEEEGG
T ss_pred             cc-cc-EehHHHhhCCCCCCEEEECCC
Confidence            65 44 344333477888888877643

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.16  E-value=0.00041  Score=48.67  Aligned_cols=87  Identities=15%  Similarity=0.188  Sum_probs=53.1

Q ss_pred             CCCCCCcEEEcCCC-ccccc----chhHhhhccCCCCCCCCccEEEcccccceeecC----chhhcccccccccccccCC
Q 039018           65 GRLREPRSISLSWA-NKSQE----ILEIFHSFSRDNWTLRSLQILDIACNNLSGAIP----ACISNSSARKEVGYTSILN  135 (181)
Q Consensus        65 ~~l~~L~~L~l~~n-~~~~~----~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p----~~~~~~~~l~~~~~~n~l~  135 (181)
                      ..-+.|+.|++++| .+...    +.+.+       ..-..|+.|+|++|.+...-.    ..+..-            +
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL-------~~N~~L~~L~L~~n~igd~ga~alA~aL~~N------------~   98 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAA-------CNSKHIEKFSLANTAISDSEARGLIELIETS------------P   98 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHH-------TTCSCCCEEECTTSCCBHHHHTTHHHHHHHC------------S
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHH-------hhCCCcCEEEccCCCCChHHHHHHHHHHhcC------------C
Confidence            44568999999985 66533    23444       677899999999999975333    333333            3


Q ss_pred             cccEEEccCCccccCCChhHHHh---cccCCEeEecCC
Q 039018          136 LLRITDRSKNNFSGVLPAELVTD---LVALRSLNLFHN  170 (181)
Q Consensus       136 ~L~~l~l~~n~~~~~~p~~~~~~---l~~L~~L~L~~n  170 (181)
                      .|++|+|+.|.|.......++..   -..|+.|+|++|
T Consensus        99 tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           99 SLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             SCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             ccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            46666666666664333333222   234666666543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.92  E-value=0.005  Score=47.12  Aligned_cols=105  Identities=8%  Similarity=0.035  Sum_probs=53.8

Q ss_pred             ccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchh
Q 039018           41 LGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI  119 (181)
Q Consensus        41 l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~  119 (181)
                      +.++..|+. .+..+ +...-...+.++.+|+.+.+..+ +.......|       ..+.+|+.+.+..+.++..-...|
T Consensus       236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF-------~~c~~L~~i~l~~~~i~~I~~~aF  306 (379)
T 4h09_A          236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLC-------SGCSNLTKVVMDNSAIETLEPRVF  306 (379)
T ss_dssp             TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTT-------TTCTTCCEEEECCTTCCEECTTTT
T ss_pred             ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccc-------ccccccccccccccccceehhhhh
Confidence            334455555 44433 22123344555666666666433 222223344       666777777777666653334556


Q ss_pred             hcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEec
Q 039018          120 SNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLF  168 (181)
Q Consensus       120 ~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~  168 (181)
                      ..|.+            |+.+.+..+ ++ .+...-|..+.+|+.+.+.
T Consensus       307 ~~c~~------------L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          307 MDCVK------------LSSVTLPTA-LK-TIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             TTCTT------------CCEEECCTT-CC-EECTTTTTTCTTCCCCCCC
T ss_pred             cCCCC------------CCEEEcCcc-cc-EEHHHHhhCCCCCCEEEEC
Confidence            65443            666666443 33 3333333666666666553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.87  E-value=0.0064  Score=46.93  Aligned_cols=87  Identities=14%  Similarity=0.161  Sum_probs=50.3

Q ss_pred             cccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEE
Q 039018           62 TSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITD  141 (181)
Q Consensus        62 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~  141 (181)
                      ..+.++.+|+.+.+.. .+.......|       ..+.+|+.+.+..+ ++..-..+|..            +.+|+.+.
T Consensus       282 ~aF~~c~~L~~i~l~~-~i~~I~~~aF-------~~c~~L~~i~lp~~-v~~I~~~aF~~------------C~~L~~i~  340 (394)
T 4gt6_A          282 GAFMNCPALQDIEFSS-RITELPESVF-------AGCISLKSIDIPEG-ITQILDDAFAG------------CEQLERIA  340 (394)
T ss_dssp             TTTTTCTTCCEEECCT-TCCEECTTTT-------TTCTTCCEEECCTT-CCEECTTTTTT------------CTTCCEEE
T ss_pred             cccccccccccccCCC-cccccCceee-------cCCCCcCEEEeCCc-ccEehHhHhhC------------CCCCCEEE
Confidence            3344555555555532 2222222334       55666666666543 33233344555            45588888


Q ss_pred             ccCCccccCCChhHHHhcccCCEeEecCCc
Q 039018          142 RSKNNFSGVLPAELVTDLVALRSLNLFHNH  171 (181)
Q Consensus       142 l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~  171 (181)
                      +..+ ++ .+.+.-|..|.+|+.+++.++.
T Consensus       341 ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          341 IPSS-VT-KIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             ECTT-CC-BCCGGGGTTCTTCCEEEESSCH
T ss_pred             ECcc-cC-EEhHhHhhCCCCCCEEEECCce
Confidence            8655 55 5665555999999999998764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.62  E-value=0.0065  Score=46.88  Aligned_cols=101  Identities=13%  Similarity=0.089  Sum_probs=67.8

Q ss_pred             cccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCch
Q 039018           40 GLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPAC  118 (181)
Q Consensus        40 ~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~  118 (181)
                      .+..+.+|+. .+..+ +...-...|.++.+|+.+++..+ +......+|       ..+.+|+.+.+..+ ++..-..+
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF-------~~c~~L~~i~lp~~-l~~I~~~a  361 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSF-------RGCTSLSNINFPLS-LRKIGANA  361 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTT-------TTCTTCCEECCCTT-CCEECTTT
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhc-------cCCCCCCEEEECcc-ccEehHHH
Confidence            4556777777 66554 33344567888999999999754 444455667       88999999999876 65344567


Q ss_pred             hhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEe
Q 039018          119 ISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSL  165 (181)
Q Consensus       119 ~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L  165 (181)
                      |..|.+            |+.+++..+ +. .+...+ .++++|+.+
T Consensus       362 F~~C~~------------L~~i~lp~~-~~-~~~~~F-~~c~~L~~I  393 (394)
T 4fs7_A          362 FQGCIN------------LKKVELPKR-LE-QYRYDF-EDTTKFKWI  393 (394)
T ss_dssp             BTTCTT------------CCEEEEEGG-GG-GGGGGB-CTTCEEEEE
T ss_pred             hhCCCC------------CCEEEECCC-CE-Ehhhee-cCCCCCcEE
Confidence            777554            888888654 22 233344 677777654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.50  E-value=0.011  Score=45.27  Aligned_cols=79  Identities=13%  Similarity=0.021  Sum_probs=54.1

Q ss_pred             cccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCch
Q 039018           40 GLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPAC  118 (181)
Q Consensus        40 ~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~  118 (181)
                      .+.++..|+. .+..+ +...-...+.++.+|+.+.+..+.+.......|       ..+.+|+.+.+..+ ++..-..+
T Consensus       258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF-------~~c~~L~~i~lp~~-l~~I~~~a  328 (379)
T 4h09_A          258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVF-------MDCVKLSSVTLPTA-LKTIQVYA  328 (379)
T ss_dssp             TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTT-------TTCTTCCEEECCTT-CCEECTTT
T ss_pred             ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhh-------cCCCCCCEEEcCcc-ccEEHHHH
Confidence            3455667776 66543 332344567889999999998877765556677       88999999999765 55344567


Q ss_pred             hhccccccc
Q 039018          119 ISNSSARKE  127 (181)
Q Consensus       119 ~~~~~~l~~  127 (181)
                      |..|.+|+.
T Consensus       329 F~~C~~L~~  337 (379)
T 4h09_A          329 FKNCKALST  337 (379)
T ss_dssp             TTTCTTCCC
T ss_pred             hhCCCCCCE
Confidence            877666443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.04  E-value=0.01  Score=38.55  Aligned_cols=35  Identities=17%  Similarity=0.078  Sum_probs=21.9

Q ss_pred             chh-ccccccccCCCCcccCCCCCCcEEEcCCCccc
Q 039018           47 LKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKS   81 (181)
Q Consensus        47 L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~   81 (181)
                      ++. ++++|.++...+..|..+++|++|++++|.+.
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            445 67777776444444566677777777777653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	181
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.003
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.2 bits (87), Expect = 3e-04
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 1   PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGN 43
            +P G   L  L  L++S N     IP+  +     +S+   N
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 21/182 (11%)

Query: 6   PENLS-SLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSF 64
           P++L      LDL +N+                   L NL +L   +  N +    P +F
Sbjct: 26  PKDLPPDTALLDLQNNKITEIKDGDF--------KNLKNLHTL--ILINNKISKISPGAF 75

Query: 65  GRLREPRSISLSWANKSQEILEIFHSFSR-----DNWTLRSLQILDIACNNLSGAIPACI 119
             L +   + LS  N+ +E+ E      +     +N   +  + +    N +        
Sbjct: 76  APLVKLERLYLSK-NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 134

Query: 120 SNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGS 179
              S+  E G    +  L     +  N + +      +    L  L+L  N   +    S
Sbjct: 135 PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS----LTELHLDGNKITKVDAAS 190

Query: 180 IH 181
           + 
Sbjct: 191 LK 192

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 38/178 (21%)

Query: 3   PNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPT 62
                +L++L  LDL++NQ ++  P             L  LT L            L  
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAP-------------LSGLTKLTE----------LKL 270

Query: 63  SFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNS 122
              ++     ++   A  + E+ E           L++L  L +  NN+S   P  +S+ 
Sbjct: 271 GANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSL 328

Query: 123 SARKEV--------GYTSILNL--LRITDRSKNNFSGVLPAELVTDLVALRSLNLFHN 170
           +  + +          +S+ NL  +       N  S + P   + +L  +  L L   
Sbjct: 329 TKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQ 383

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	181
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.89
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.82
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.79
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.76
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.73
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.66
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.65
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.64
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.62
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.58
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.56
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.55
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.49
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.46
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.41
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.4
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.38
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.37
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.35
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.32
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.31
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.27
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.13
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.13
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.94
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.87
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.84
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.8
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.58
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.54
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.4
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.08
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.78
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.55
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.33
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.34

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.89  E-value=3.1e-23  Score=155.38  Aligned_cols=170  Identities=28%  Similarity=0.401  Sum_probs=113.1

Q ss_pred             CCCCCCCCcCCCeeeccC-cccccccCccccc-------------cccccCCcccccccchh-ccccccccCCCCcccCC
Q 039018            2 IPNGPENLSSLRYLDLSD-NQFNSTIPEWISR-------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGR   66 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~-n~i~~~~p~~~~~-------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~   66 (181)
                      ||++++++++|++|++++ |++.|.+|+.+..             +.+..+..+..+..|+. +++.|.+.+.+|..++.
T Consensus        68 lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~  147 (313)
T d1ogqa_          68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS  147 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred             CChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhcc
Confidence            788999999999999986 7888878876654             23334444555555555 55566555556666666


Q ss_pred             CCCCcEEEcCCCcccccchhHhhhccCCCCCCCCc-cEEEcccccceeecCchhhcc-----------------------
Q 039018           67 LREPRSISLSWANKSQEILEIFHSFSRDNWTLRSL-QILDIACNNLSGAIPACISNS-----------------------  122 (181)
Q Consensus        67 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L-~~L~l~~n~i~~~~p~~~~~~-----------------------  122 (181)
                      +++++++++++|.+.+.+|+.+       ..+..+ +.+++++|++++..|..+..+                       
T Consensus       148 l~~L~~l~l~~n~l~~~ip~~~-------~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~  220 (313)
T d1ogqa_         148 LPNLVGITFDGNRISGAIPDSY-------GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD  220 (313)
T ss_dssp             CTTCCEEECCSSCCEEECCGGG-------GCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTT
T ss_pred             Ccccceeecccccccccccccc-------ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            6666666666666655555555       333332 444445544444443333332                       


Q ss_pred             ccccc-ccccc----------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCC
Q 039018          123 SARKE-VGYTS----------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGS  179 (181)
Q Consensus       123 ~~l~~-~~~~n----------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~  179 (181)
                      +.+++ ...++          .+++|+.|++++|+++|.+|+++ +.+++|++|+|++|+++|.+|..
T Consensus       221 ~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l-~~L~~L~~L~Ls~N~l~g~iP~~  287 (313)
T d1ogqa_         221 KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL-TQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             SCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGG-GGCTTCCEEECCSSEEEEECCCS
T ss_pred             ccccccccccccccccccccccccccccccCccCeecccCChHH-hCCCCCCEEECcCCcccccCCCc
Confidence            22222 11111          56789999999999999999998 99999999999999999999963

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.82  E-value=1.2e-20  Score=141.21  Aligned_cols=164  Identities=23%  Similarity=0.422  Sum_probs=126.9

Q ss_pred             CCCCCCCCCcCCCeeeccCcccccccCccccc-------------cccccCCcccccccchh-ccccccccCCCCcccCC
Q 039018            1 PIPNGPENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGR   66 (181)
Q Consensus         1 ~lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~   66 (181)
                      +||++++++++|++|++++|++.+..+..+..             +...+|..+++++.++. ++++|.+.+.+|+.+..
T Consensus        92 ~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~  171 (313)
T d1ogqa_          92 PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS  171 (313)
T ss_dssp             CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC
T ss_pred             ccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccc
Confidence            48999999999999999999999777765554             34567888999999999 99999998888888888


Q ss_pred             CCCC-cEEEcCCCcccccchhHhhhc---------------------------------------cCCCCCCCCccEEEc
Q 039018           67 LREP-RSISLSWANKSQEILEIFHSF---------------------------------------SRDNWTLRSLQILDI  106 (181)
Q Consensus        67 l~~L-~~L~l~~n~~~~~~~~~~~~~---------------------------------------~~~~~~~~~L~~L~l  106 (181)
                      +.++ +.++++.|.+.+..+..+..+                                       +..+..+.+++.|++
T Consensus       172 l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~L  251 (313)
T d1ogqa_         172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDL  251 (313)
T ss_dssp             CCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEEC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence            7775 788888887766555443311                                       012344566777777


Q ss_pred             ccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCc-cccc-CCC
Q 039018          107 ACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNH-FKEK-FPG  178 (181)
Q Consensus       107 ~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~-l~~~-~p~  178 (181)
                      ++|+++|.+|.++++            +++|++|++++|+++|.+|+ + +.+.+|+.+++++|+ +.|. +|.
T Consensus       252 s~N~l~g~iP~~l~~------------L~~L~~L~Ls~N~l~g~iP~-~-~~L~~L~~l~l~~N~~l~g~plp~  311 (313)
T d1ogqa_         252 RNNRIYGTLPQGLTQ------------LKFLHSLNVSFNNLCGEIPQ-G-GNLQRFDVSAYANNKCLCGSPLPA  311 (313)
T ss_dssp             CSSCCEECCCGGGGG------------CTTCCEEECCSSEEEEECCC-S-TTGGGSCGGGTCSSSEEESTTSSC
T ss_pred             ccCeecccCChHHhC------------CCCCCEEECcCCcccccCCC-c-ccCCCCCHHHhCCCccccCCCCCC
Confidence            777777777777766            45599999999999999995 4 789999999999997 5654 553

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.8e-19  Score=130.91  Aligned_cols=154  Identities=22%  Similarity=0.212  Sum_probs=107.7

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK   80 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (181)
                      ||+.+.  +.+++|+|++|.|+ .+|.          ..|.++++|++ ++++|.++ .++ .++.+++|++|++++|++
T Consensus        25 iP~~lp--~~l~~L~Ls~N~i~-~l~~----------~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~l   89 (266)
T d1p9ag_          25 LPPDLP--KDTTILHLSENLLY-TFSL----------ATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQL   89 (266)
T ss_dssp             CCSCCC--TTCCEEECTTSCCS-EEEG----------GGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSSCC
T ss_pred             eCcCcC--cCCCEEECcCCcCC-CcCH----------HHhhcccccccccccccccc-ccc-cccccccccccccccccc
Confidence            676663  57899999999998 3332          34677888888 88888877 444 356788888888888887


Q ss_pred             cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcccEEEccCCccc
Q 039018           81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFS  148 (181)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~  148 (181)
                      .. .+..+       ..+++|+.+++++|.+....+..+..+.++++ .+.+|           .++.++.+++++|+++
T Consensus        90 ~~-~~~~~-------~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_          90 QS-LPLLG-------QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             SS-CCCCT-------TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             cc-ccccc-------ccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence            63 34445       66777777777777776444555666666666 33333           4566888888888888


Q ss_pred             cCCChhHHHhcccCCEeEecCCcccccCCCCC
Q 039018          149 GVLPAELVTDLVALRSLNLFHNHFKEKFPGSI  180 (181)
Q Consensus       149 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i  180 (181)
                      +..+..+ ..+++|++|+|++|+++ .+|+.+
T Consensus       162 ~~~~~~~-~~l~~L~~L~Ls~N~L~-~lp~~~  191 (266)
T d1p9ag_         162 ELPAGLL-NGLENLDTLLLQENSLY-TIPKGF  191 (266)
T ss_dssp             CCCTTTT-TTCTTCCEEECCSSCCC-CCCTTT
T ss_pred             ccCcccc-ccccccceeecccCCCc-ccChhH
Confidence            4433444 77888888888888888 777654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=7e-18  Score=124.37  Aligned_cols=163  Identities=19%  Similarity=0.102  Sum_probs=115.0

Q ss_pred             CCCCCcCCCeeeccCcccccccCccccc--------------cccccCCcccccccchh-ccccccccCCCCcccCCCCC
Q 039018            5 GPENLSSLRYLDLSDNQFNSTIPEWISR--------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLRE   69 (181)
Q Consensus         5 ~~~~l~~L~~L~ls~n~i~~~~p~~~~~--------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~   69 (181)
                      .+.+++.|+.|++++|.+....+..+..              +....+..+.++++|++ ++++|.+....+..+....+
T Consensus        51 ~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  130 (284)
T d1ozna_          51 SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA  130 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             HhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcc
Confidence            4556666666666666655332222221              11122556777888888 88888877555666777888


Q ss_pred             CcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcc
Q 039018           70 PRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLL  137 (181)
Q Consensus        70 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L  137 (181)
                      |+.+++++|.+.+..+..+       ..+.+|+.|++++|.+++..+..+..+++|++ .+.+|           .+++|
T Consensus       131 L~~l~l~~N~l~~i~~~~f-------~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L  203 (284)
T d1ozna_         131 LQYLYLQDNALQALPDDTF-------RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL  203 (284)
T ss_dssp             CCEEECCSSCCCCCCTTTT-------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             cchhhhccccccccChhHh-------ccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhc
Confidence            8888888888876555666       67788888888888888666677888888887 44444           56778


Q ss_pred             cEEEccCCccccCCChhHHHhcccCCEeEecCCccccc
Q 039018          138 RITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEK  175 (181)
Q Consensus       138 ~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~  175 (181)
                      +++++++|++.+ ++...|..+++|++|++++|.+.++
T Consensus       204 ~~L~l~~N~i~~-~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         204 MTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             CEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             cccccccccccc-ccccccccccccCEEEecCCCCCCC
Confidence            999999999984 4544448899999999999988754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.9e-18  Score=124.77  Aligned_cols=148  Identities=19%  Similarity=0.140  Sum_probs=111.7

Q ss_pred             CCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccc
Q 039018            4 NGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQ   82 (181)
Q Consensus         4 ~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~   82 (181)
                      ..+.++++|+.|++++|.|+ .+|.            ++.+++|+. ++++|.+. ..+..+..+++|++|++++|.+..
T Consensus        49 ~~f~~l~~L~~L~L~~N~l~-~l~~------------~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~  114 (266)
T d1p9ag_          49 ATLMPYTRLTQLNLDRAELT-KLQV------------DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS  114 (266)
T ss_dssp             GGGTTCTTCCEEECTTSCCC-EEEC------------CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCC
T ss_pred             HHhhcccccccccccccccc-cccc------------cccccccccccccccccc-ccccccccccccccccccccccce
Confidence            45788999999999999998 3332            456788888 88888887 456677888888888888888776


Q ss_pred             cchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcccEEEccCCccccC
Q 039018           83 EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFSGV  150 (181)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~~~  150 (181)
                      ..+..+       ..+.+++.+++++|.++...+..+..++.+++ .+.+|           .+++|++|++++|+++ .
T Consensus       115 ~~~~~~-------~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~  186 (266)
T d1p9ag_         115 LPLGAL-------RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T  186 (266)
T ss_dssp             CCSSTT-------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred             eecccc-------ccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-c
Confidence            555555       56666667777766666333444555666665 34444           4677999999999999 8


Q ss_pred             CChhHHHhcccCCEeEecCCcccc
Q 039018          151 LPAELVTDLVALRSLNLFHNHFKE  174 (181)
Q Consensus       151 ~p~~~~~~l~~L~~L~L~~n~l~~  174 (181)
                      +|+.+ ..+++|+.|+|++|.+..
T Consensus       187 lp~~~-~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         187 IPKGF-FGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CCTTT-TTTCCCSEEECCSCCBCC
T ss_pred             cChhH-CCCCCCCEEEecCCCCCC
Confidence            99888 789999999999998753

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=8e-18  Score=117.44  Aligned_cols=116  Identities=22%  Similarity=0.304  Sum_probs=67.1

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK   80 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (181)
                      ||..+.  +.+++|++++|.|++.++.          ..+.++++|+. ++++|.+....+..+..+++|++|++++|++
T Consensus        23 iP~~lp--~~l~~L~Ls~N~i~~~~~~----------~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l   90 (192)
T d1w8aa_          23 IPRDIP--LHTTELLLNDNELGRISSD----------GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             CCSCCC--TTCSEEECCSCCCCSBCCS----------CSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred             cCCCCC--CCCCEEEeCCCCCcccccc----------cccCCCceEeeeeccccccccccccccccccccceeeeccccc
Confidence            454442  4566666666666533332          33455666666 6666666655556666666666666666666


Q ss_pred             cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccc
Q 039018           81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFS  148 (181)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~  148 (181)
                      .+..+..|       ..+++|+.|++++|++++..|+.|..+++            |+++++++|.+.
T Consensus        91 ~~l~~~~F-------~~l~~L~~L~L~~N~l~~i~~~~f~~l~~------------L~~l~L~~N~~~  139 (192)
T d1w8aa_          91 KEISNKMF-------LGLHQLKTLNLYDNQISCVMPGSFEHLNS------------LTSLNLASNPFN  139 (192)
T ss_dssp             CEECSSSS-------TTCTTCCEEECCSSCCCEECTTSSTTCTT------------CCEEECTTCCBC
T ss_pred             cccCHHHH-------hCCCcccccccCCccccccCHHHhcCCcc------------cccccccccccc
Confidence            65555555       56666666666666666444445555333            555555555554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3.7e-17  Score=120.40  Aligned_cols=155  Identities=21%  Similarity=0.208  Sum_probs=113.4

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccc------------------------
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVL------------------------   56 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~------------------------   56 (181)
                      +|..+.  +.+++|+|++|.|+ .+|.          ..+.+++.|+. ++++|.+                        
T Consensus        26 iP~~ip--~~~~~L~Ls~N~i~-~i~~----------~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          26 VPVGIP--AASQRIFLHGNRIS-HVPA----------ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             CCTTCC--TTCSEEECTTSCCC-EECT----------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             cCCCCC--CCCCEEECcCCcCC-CCCH----------HHhhccccccccccccccccccccccccccccccccccccccc
Confidence            566653  57899999999998 4443          22444444444 4444443                        


Q ss_pred             -cCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc--
Q 039018           57 -EGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS--  132 (181)
Q Consensus        57 -~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n--  132 (181)
                       ....+..+.++++|++|++++|.+....+..+       ....+|+.+++++|.+++..+..+..+++|++ .+.+|  
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-------~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l  165 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF-------RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI  165 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT-------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cccccchhhcccccCCEEecCCccccccccccc-------chhcccchhhhccccccccChhHhccccchhhcccccCcc
Confidence             33345667788889999999888765555666       77888999999999998555567888888888 45554  


Q ss_pred             ---------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCC
Q 039018          133 ---------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFP  177 (181)
Q Consensus       133 ---------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p  177 (181)
                               .+++|+.+++++|++++..|..+ ..+++|++|++++|.+++..|
T Consensus       166 ~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f-~~l~~L~~L~l~~N~i~~~~~  218 (284)
T d1ozna_         166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF-RDLGRLMTLYLFANNLSALPT  218 (284)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCSCCCH
T ss_pred             cccchhhhccccccchhhhhhccccccChhHh-hhhhhcccccccccccccccc
Confidence                     67778899999998887667776 888899999999999885443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=2.6e-17  Score=114.77  Aligned_cols=130  Identities=19%  Similarity=0.165  Sum_probs=107.3

Q ss_pred             CCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCC-CcccCCCCCCcEEEcCCCcccccchhHhh
Q 039018           12 LRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKL-PTSFGRLREPRSISLSWANKSQEILEIFH   89 (181)
Q Consensus        12 L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~   89 (181)
                      .++++.++++++ .+|+           .+.  +.+++ ++++|.++... +..|..+++|+.|++++|.+....+..+ 
T Consensus        10 ~~~v~Cs~~~L~-~iP~-----------~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~-   74 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPR-----------DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-   74 (192)
T ss_dssp             TTEEECTTSCCS-SCCS-----------CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT-
T ss_pred             CCEEEEeCCCcC-ccCC-----------CCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccc-
Confidence            467899999998 5554           332  46777 89999997544 5667899999999999999998888888 


Q ss_pred             hccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecC
Q 039018           90 SFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFH  169 (181)
Q Consensus        90 ~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~  169 (181)
                            ..+.+|+.|++++|+++...|..|..+            ++|++|++++|+++ .++...|..+++|++++|++
T Consensus        75 ------~~~~~L~~L~Ls~N~l~~l~~~~F~~l------------~~L~~L~L~~N~l~-~i~~~~f~~l~~L~~l~L~~  135 (192)
T d1w8aa_          75 ------EGASHIQELQLGENKIKEISNKMFLGL------------HQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             ------TTCTTCCEEECCSCCCCEECSSSSTTC------------TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECTT
T ss_pred             ------ccccccceeeeccccccccCHHHHhCC------------CcccccccCCcccc-ccCHHHhcCCcccccccccc
Confidence                  889999999999999996666778774            45999999999999 45544449999999999999


Q ss_pred             Cccccc
Q 039018          170 NHFKEK  175 (181)
Q Consensus       170 n~l~~~  175 (181)
                      |.+...
T Consensus       136 N~~~~~  141 (192)
T d1w8aa_         136 NPFNCN  141 (192)
T ss_dssp             CCBCCS
T ss_pred             cccccc
Confidence            998753

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.66  E-value=1.1e-15  Score=113.35  Aligned_cols=110  Identities=16%  Similarity=0.219  Sum_probs=71.3

Q ss_pred             cccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCch
Q 039018           40 GLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPAC  118 (181)
Q Consensus        40 ~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~  118 (181)
                      .+..+++|+. ++++|.+. .+|..  ..++++.|++++|......+..+       ..+..++.|++++|.+++..+..
T Consensus       145 ~~~~l~~L~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n~~~~~~~~~~-------~~~~~l~~L~~s~n~l~~~~~~~  214 (305)
T d1xkua_         145 AFQGMKKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKITKVDAASL-------KGLNNLAKLGLSFNSISAVDNGS  214 (305)
T ss_dssp             GGGGCTTCCEEECCSSCCC-SCCSS--CCTTCSEEECTTSCCCEECTGGG-------TTCTTCCEEECCSSCCCEECTTT
T ss_pred             ccccccccCccccccCCcc-ccCcc--cCCccCEEECCCCcCCCCChhHh-------hcccccccccccccccccccccc
Confidence            4445566666 67777666 44443  25677777777777776666666       77777888888888777665666


Q ss_pred             hhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCccc
Q 039018          119 ISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK  173 (181)
Q Consensus       119 ~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~  173 (181)
                      +..+++            |++|++++|.++ .+|..+ ..+++|+.|+|++|.++
T Consensus       215 ~~~l~~------------L~~L~L~~N~L~-~lp~~l-~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         215 LANTPH------------LRELHLNNNKLV-KVPGGL-ADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             GGGSTT------------CCEEECCSSCCS-SCCTTT-TTCSSCCEEECCSSCCC
T ss_pred             cccccc------------ceeeeccccccc-cccccc-ccccCCCEEECCCCccC
Confidence            666554            666666666665 455555 55666666666666655

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.65  E-value=9.7e-16  Score=113.65  Aligned_cols=162  Identities=24%  Similarity=0.287  Sum_probs=111.7

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK   80 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (181)
                      ||..+.  +.+++|++++|+|+ .+|+          ..|.++++|+. ++++|.+....|..+..+++|+++++++|.+
T Consensus        25 lP~~l~--~~l~~L~Ls~N~i~-~l~~----------~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l   91 (305)
T d1xkua_          25 VPKDLP--PDTALLDLQNNKIT-EIKD----------GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL   91 (305)
T ss_dssp             CCCSCC--TTCCEEECCSSCCC-CBCT----------TTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC
T ss_pred             cCCCCC--CCCCEEECcCCcCC-CcCh----------hHhhccccccccccccccccccchhhhhCCCccCEecccCCcc
Confidence            677663  68999999999998 4443          34677888888 8888888866677788888888888887765


Q ss_pred             cccc---------------------hhHhhh-------------------ccCCCCCCCCccEEEcccccceeecCchhh
Q 039018           81 SQEI---------------------LEIFHS-------------------FSRDNWTLRSLQILDIACNNLSGAIPACIS  120 (181)
Q Consensus        81 ~~~~---------------------~~~~~~-------------------~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~  120 (181)
                      ....                     +..+..                   ....+..+.+|+.+++++|.++ .+|..+ 
T Consensus        92 ~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~-  169 (305)
T d1xkua_          92 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL-  169 (305)
T ss_dssp             SBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC-
T ss_pred             CcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCccc-
Confidence            4211                     111100                   0012344567777888887776 454432 


Q ss_pred             ccccccc-ccccc-----------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCCCC
Q 039018          121 NSSARKE-VGYTS-----------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSIH  181 (181)
Q Consensus       121 ~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i~  181 (181)
                       .+++++ .+.+|           .++.+++|++++|.+.+..+..+ ..+++|+.|+|++|.++ .+|++++
T Consensus       170 -~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~-~~l~~L~~L~L~~N~L~-~lp~~l~  239 (305)
T d1xkua_         170 -PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL-ANTPHLRELHLNNNKLV-KVPGGLA  239 (305)
T ss_dssp             -CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG-GGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred             -CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccc-cccccceeeeccccccc-ccccccc
Confidence             344444 33333           56778999999999996556556 99999999999999999 7887763

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4e-16  Score=105.89  Aligned_cols=127  Identities=19%  Similarity=0.135  Sum_probs=101.0

Q ss_pred             CCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCccccc
Q 039018            5 GPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQE   83 (181)
Q Consensus         5 ~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~   83 (181)
                      .+.++..++.|++++|+|+            .++..+..+++|+. ++++|.+. .++ .+..+++|++|++++|.+...
T Consensus        13 ~~~n~~~lr~L~L~~n~I~------------~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l   78 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP------------VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRI   78 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC------------SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEE
T ss_pred             hccCcCcCcEEECCCCCCC------------ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCC
Confidence            3557778999999999998            33343567889999 99999998 553 588999999999999999865


Q ss_pred             chhHhhhccCCCCCCCCccEEEcccccceeecCc--hhhcccccccccccccCCcccEEEccCCccccCCCh---hHHHh
Q 039018           84 ILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPA--CISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPA---ELVTD  158 (181)
Q Consensus        84 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~--~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~---~~~~~  158 (181)
                      .+..+       ..+++|+.|++++|+++ .+++  .+..            +++|+++++++|.++ ..|.   .++..
T Consensus        79 ~~~~~-------~~l~~L~~L~L~~N~i~-~~~~l~~l~~------------l~~L~~L~l~~N~i~-~~~~~r~~~i~~  137 (162)
T d1a9na_          79 GEGLD-------QALPDLTELILTNNSLV-ELGDLDPLAS------------LKSLTYLCILRNPVT-NKKHYRLYVIYK  137 (162)
T ss_dssp             CSCHH-------HHCTTCCEEECCSCCCC-CGGGGGGGGG------------CTTCCEEECCSSGGG-GSTTHHHHHHHH
T ss_pred             Ccccc-------ccccccccceecccccc-cccccccccc------------ccccchhhcCCCccc-cccchHHHHHHH
Confidence            55556       67899999999999997 4443  3444            556999999999998 5563   34488


Q ss_pred             cccCCEeE
Q 039018          159 LVALRSLN  166 (181)
Q Consensus       159 l~~L~~L~  166 (181)
                      +++|++||
T Consensus       138 lp~L~~LD  145 (162)
T d1a9na_         138 VPQVRVLD  145 (162)
T ss_dssp             CTTCSEET
T ss_pred             CCCcCeeC
Confidence            99999987

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=3.4e-15  Score=96.82  Aligned_cols=117  Identities=21%  Similarity=0.212  Sum_probs=91.7

Q ss_pred             CeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhc
Q 039018           13 RYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSF   91 (181)
Q Consensus        13 ~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~   91 (181)
                      |+|++++|.++ .++            .+.+++.|++ ++++|.+. .+|+.++.+++|++|++++|.+.. ++ .+   
T Consensus         1 R~L~Ls~n~l~-~l~------------~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~---   61 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC------------HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GV---   61 (124)
T ss_dssp             SEEECTTSCCS-SCC------------CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GG---
T ss_pred             CEEEcCCCCCC-CCc------------ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-cc---
Confidence            57999999998 333            3778889999 99999998 678888999999999999999874 33 46   


Q ss_pred             cCCCCCCCCccEEEcccccceeecC--chhhcccccccccccccCCcccEEEccCCccccC--CChhHHHhcccCCEe
Q 039018           92 SRDNWTLRSLQILDIACNNLSGAIP--ACISNSSARKEVGYTSILNLLRITDRSKNNFSGV--LPAELVTDLVALRSL  165 (181)
Q Consensus        92 ~~~~~~~~~L~~L~l~~n~i~~~~p--~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~--~p~~~~~~l~~L~~L  165 (181)
                          ..+++|+.+++++|+++ .++  ..+..            +++|+++++++|.+++.  .++.+...+|+|+.+
T Consensus        62 ----~~l~~L~~L~l~~N~i~-~~~~~~~l~~------------~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          62 ----ANLPRLQELLLCNNRLQ-QSAAIQPLVS------------CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             ----TTCSSCCEEECCSSCCC-SSSTTGGGGG------------CTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ----ccccccCeEECCCCccC-CCCCchhhcC------------CCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence                88999999999999997 444  34555            45599999999998742  344555778888765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=8.1e-15  Score=102.47  Aligned_cols=139  Identities=19%  Similarity=0.216  Sum_probs=89.0

Q ss_pred             CcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhH
Q 039018            9 LSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEI   87 (181)
Q Consensus         9 l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~   87 (181)
                      +++++.|++++|.++ .+            +++..+++|++ ++++|.+++ ++ .++++++|++|++++|.+.. ++ .
T Consensus        39 l~~l~~L~l~~~~i~-~l------------~~l~~l~nL~~L~Ls~N~l~~-~~-~l~~l~~L~~L~l~~n~~~~-~~-~  101 (199)
T d2omxa2          39 LDQVTTLQADRLGIK-SI------------DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIAD-IT-P  101 (199)
T ss_dssp             HTTCCEEECTTSCCC-CC------------TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CG-G
T ss_pred             hcCCCEEECCCCCCC-Cc------------cccccCCCcCcCccccccccC-cc-cccCCccccccccccccccc-cc-c
Confidence            456677777777766 11            22556666666 777776663 32 26667777777777666542 22 2


Q ss_pred             hhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc---------cCCcccEEEccCCccccCCChhHHH
Q 039018           88 FHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS---------ILNLLRITDRSKNNFSGVLPAELVT  157 (181)
Q Consensus        88 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n---------~l~~L~~l~l~~n~~~~~~p~~~~~  157 (181)
                      +       ..++.|+.++++++.+..  ...+..+++|++ .+.+|         .+++++.+++++|+++ .++ .+ +
T Consensus       102 l-------~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~-~l~-~l-~  169 (199)
T d2omxa2         102 L-------ANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVT-DLK-PL-A  169 (199)
T ss_dssp             G-------TTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCC-CCG-GG-T
T ss_pred             c-------cccccccccccccccccc--ccccchhhhhHHhhhhhhhhccccccccccccccccccccccc-CCc-cc-c
Confidence            4       556666666666665541  123445555555 33333         4667999999999998 454 46 8


Q ss_pred             hcccCCEeEecCCcccccCC
Q 039018          158 DLVALRSLNLFHNHFKEKFP  177 (181)
Q Consensus       158 ~l~~L~~L~L~~n~l~~~~p  177 (181)
                      ++++|+.|++++|+++ +++
T Consensus       170 ~l~~L~~L~ls~N~i~-~i~  188 (199)
T d2omxa2         170 NLTTLERLDISSNKVS-DIS  188 (199)
T ss_dssp             TCTTCCEEECCSSCCC-CCG
T ss_pred             CCCCCCEEECCCCCCC-CCc
Confidence            9999999999999998 454

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=1e-14  Score=102.74  Aligned_cols=139  Identities=19%  Similarity=0.232  Sum_probs=104.3

Q ss_pred             CcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhH
Q 039018            9 LSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEI   87 (181)
Q Consensus         9 l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~   87 (181)
                      +..|+.|++++|.+++ ++            ++..+++|++ ++++|.+++ ++ .++.+++|++|++++|.+.. ++ .
T Consensus        45 L~~L~~L~l~~~~i~~-l~------------~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~  107 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKS-VQ------------GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LS-S  107 (210)
T ss_dssp             HHTCCEEECTTSCCCC-CT------------TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-G
T ss_pred             hcCccEEECcCCCCCC-ch------------hHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccccc-cc-c
Confidence            5678888888888872 22            3667888888 888888884 43 46788889999998888763 33 3


Q ss_pred             hhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc---------cCCcccEEEccCCccccCCChhHHH
Q 039018           88 FHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS---------ILNLLRITDRSKNNFSGVLPAELVT  157 (181)
Q Consensus        88 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n---------~l~~L~~l~l~~n~~~~~~p~~~~~  157 (181)
                      +       ..+++|+.+++++|.+. .+ ..+..++.+++ ....|         .+++|+++++++|+++ .++ .+ +
T Consensus       108 l-------~~l~~L~~L~l~~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~-~i~-~l-~  175 (210)
T d1h6ta2         108 L-------KDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-DIV-PL-A  175 (210)
T ss_dssp             G-------TTCTTCCEEECTTSCCC-CC-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC-CCG-GG-T
T ss_pred             c-------ccccccccccccccccc-cc-cccccccccccccccccccccccccccccccccccccccccc-ccc-cc-c
Confidence            5       77888888888888775 33 34666777766 34333         5778999999999998 455 35 8


Q ss_pred             hcccCCEeEecCCcccccCC
Q 039018          158 DLVALRSLNLFHNHFKEKFP  177 (181)
Q Consensus       158 ~l~~L~~L~L~~n~l~~~~p  177 (181)
                      .+++|+.|+|++|.++ .+|
T Consensus       176 ~l~~L~~L~Ls~N~i~-~l~  194 (210)
T d1h6ta2         176 GLTKLQNLYLSKNHIS-DLR  194 (210)
T ss_dssp             TCTTCCEEECCSSCCC-BCG
T ss_pred             CCCCCCEEECCCCCCC-CCh
Confidence            8999999999999998 565

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=1.4e-14  Score=102.09  Aligned_cols=136  Identities=27%  Similarity=0.285  Sum_probs=98.1

Q ss_pred             CCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCccccc
Q 039018            5 GPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQE   83 (181)
Q Consensus         5 ~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~   83 (181)
                      .+..+++|+.|++++|.|++ ++.            ++.+++|+. ++++|.++ .++ .+..+++|+.+++++|.+.. 
T Consensus        63 ~l~~l~~L~~L~L~~n~i~~-l~~------------~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~~-  126 (210)
T d1h6ta2          63 GIQYLPNVTKLFLNGNKLTD-IKP------------LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISD-  126 (210)
T ss_dssp             TGGGCTTCCEEECCSSCCCC-CGG------------GTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCCC-
T ss_pred             hHhhCCCCCEEeCCCccccC-ccc------------cccCcccccccccccccc-ccc-cccccccccccccccccccc-
Confidence            46788999999999999983 332            567888888 89999888 444 47888999999998887653 


Q ss_pred             chhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc---------cCCcccEEEccCCccccCCCh
Q 039018           84 ILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS---------ILNLLRITDRSKNNFSGVLPA  153 (181)
Q Consensus        84 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n---------~l~~L~~l~l~~n~~~~~~p~  153 (181)
                      . ..+       ..++.++.+++++|.+++  +..+..+++|++ .+.+|         .+++|+.|++++|+++ .++ 
T Consensus       127 ~-~~l-------~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~-~l~-  194 (210)
T d1h6ta2         127 I-NGL-------VHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLR-  194 (210)
T ss_dssp             C-GGG-------GGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-BCG-
T ss_pred             c-ccc-------cccccccccccccccccc--cccccccccccccccccccccccccccCCCCCCEEECCCCCCC-CCh-
Confidence            2 234       455666666666666542  223445555555 33333         4677999999999998 666 


Q ss_pred             hHHHhcccCCEeEecC
Q 039018          154 ELVTDLVALRSLNLFH  169 (181)
Q Consensus       154 ~~~~~l~~L~~L~L~~  169 (181)
                      .+ ..+++|++|+|++
T Consensus       195 ~l-~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         195 AL-AGLKNLDVLELFS  209 (210)
T ss_dssp             GG-TTCTTCSEEEEEE
T ss_pred             hh-cCCCCCCEEEccC
Confidence            56 8999999999974

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=1.2e-14  Score=94.14  Aligned_cols=98  Identities=21%  Similarity=0.188  Sum_probs=83.5

Q ss_pred             ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccccc
Q 039018           50 SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVG  129 (181)
Q Consensus        50 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~  129 (181)
                      ++++|.++ .++ .+..+++|++|++++|.+. .+|+.+       +.+++|+.|++++|.++ .+|+ +..        
T Consensus         4 ~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~-------~~l~~L~~L~l~~N~i~-~l~~-~~~--------   63 (124)
T d1dcea3           4 HLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPAL-------AALRCLEVLQASDNALE-NVDG-VAN--------   63 (124)
T ss_dssp             ECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGG-------GGCTTCCEEECCSSCCC-CCGG-GTT--------
T ss_pred             EcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhh-------hhhhccccccccccccc-ccCc-ccc--------
Confidence            78999998 555 4899999999999999997 567778       89999999999999998 5553 666        


Q ss_pred             ccccCCcccEEEccCCccccCCC--hhHHHhcccCCEeEecCCccc
Q 039018          130 YTSILNLLRITDRSKNNFSGVLP--AELVTDLVALRSLNLFHNHFK  173 (181)
Q Consensus       130 ~~n~l~~L~~l~l~~n~~~~~~p--~~~~~~l~~L~~L~L~~n~l~  173 (181)
                          +++|+++++++|+++ .++  ..+ ..+++|+.+++++|+++
T Consensus        64 ----l~~L~~L~l~~N~i~-~~~~~~~l-~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          64 ----LPRLQELLLCNNRLQ-QSAAIQPL-VSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             ----CSSCCEEECCSSCCC-SSSTTGGG-GGCTTCCEEECTTSGGG
T ss_pred             ----ccccCeEECCCCccC-CCCCchhh-cCCCCCCEEECCCCcCC
Confidence                455999999999998 444  345 88999999999999998

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.53  E-value=5.8e-14  Score=98.01  Aligned_cols=132  Identities=26%  Similarity=0.331  Sum_probs=96.7

Q ss_pred             CCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCccccc
Q 039018            5 GPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQE   83 (181)
Q Consensus         5 ~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~   83 (181)
                      .+..+++|++|++++|++++ ++.            ++++++|+. ++++|.+. .++ .+.++++|+.++++++.....
T Consensus        57 ~l~~l~nL~~L~Ls~N~l~~-~~~------------l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~~  121 (199)
T d2omxa2          57 GVEYLNNLTQINFSNNQLTD-ITP------------LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITDI  121 (199)
T ss_dssp             TGGGCTTCCEEECCSSCCCC-CGG------------GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC
T ss_pred             ccccCCCcCcCccccccccC-ccc------------ccCCcccccccccccccc-ccc-ccccccccccccccccccccc
Confidence            46788999999999999983 221            667778888 88888776 343 477788888888887776532


Q ss_pred             chhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc---------cCCcccEEEccCCccccCCCh
Q 039018           84 ILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS---------ILNLLRITDRSKNNFSGVLPA  153 (181)
Q Consensus        84 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n---------~l~~L~~l~l~~n~~~~~~p~  153 (181)
                        +.+       ..+++|+.+++++|++. .++ .+..++++++ .+.+|         .+++|++|++++|+++ .++ 
T Consensus       122 --~~~-------~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~-~i~-  188 (199)
T d2omxa2         122 --DPL-------KNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVS-DIS-  188 (199)
T ss_dssp             --GGG-------TTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-CCG-
T ss_pred             --ccc-------chhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccCCccccCCCCCCEEECCCCCCC-CCc-
Confidence              235       66778888888888775 333 4666777777 44444         5788999999999998 555 


Q ss_pred             hHHHhcccCCEe
Q 039018          154 ELVTDLVALRSL  165 (181)
Q Consensus       154 ~~~~~l~~L~~L  165 (181)
                      .+ +.+++|+.|
T Consensus       189 ~l-~~L~~L~~L  199 (199)
T d2omxa2         189 VL-AKLTNLESL  199 (199)
T ss_dssp             GG-GGCTTCSEE
T ss_pred             cc-cCCCCCCcC
Confidence            46 889988875

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=5.5e-14  Score=95.15  Aligned_cols=112  Identities=16%  Similarity=0.068  Sum_probs=90.9

Q ss_pred             ccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchh
Q 039018           41 LGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI  119 (181)
Q Consensus        41 l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~  119 (181)
                      +.++..+++ ++++|.+. .++..+..+++|++|++++|.+.. + +.+       ..+++|+.|++++|+++...+..+
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~-------~~l~~L~~L~ls~N~i~~l~~~~~   83 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-L-DGF-------PLLRRLKTLLVNNNRICRIGEGLD   83 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-E-CCC-------CCCSSCCEEECCSSCCCEECSCHH
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-c-CCc-------ccCcchhhhhcccccccCCCcccc
Confidence            556778889 99999999 567766789999999999999874 3 346       889999999999999984444445


Q ss_pred             hcccccccccccccCCcccEEEccCCccccCCCh--hHHHhcccCCEeEecCCcccccCC
Q 039018          120 SNSSARKEVGYTSILNLLRITDRSKNNFSGVLPA--ELVTDLVALRSLNLFHNHFKEKFP  177 (181)
Q Consensus       120 ~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~--~~~~~l~~L~~L~L~~n~l~~~~p  177 (181)
                      ..+            ++|++|++++|++. .++.  .+ ..+++|+++++++|.++ ..|
T Consensus        84 ~~l------------~~L~~L~L~~N~i~-~~~~l~~l-~~l~~L~~L~l~~N~i~-~~~  128 (162)
T d1a9na_          84 QAL------------PDLTELILTNNSLV-ELGDLDPL-ASLKSLTYLCILRNPVT-NKK  128 (162)
T ss_dssp             HHC------------TTCCEEECCSCCCC-CGGGGGGG-GGCTTCCEEECCSSGGG-GST
T ss_pred             ccc------------cccccceecccccc-cccccccc-ccccccchhhcCCCccc-ccc
Confidence            564            45999999999998 4443  45 88999999999999997 455

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.49  E-value=2.5e-13  Score=96.52  Aligned_cols=41  Identities=22%  Similarity=0.255  Sum_probs=33.8

Q ss_pred             cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCC
Q 039018          133 ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFP  177 (181)
Q Consensus       133 ~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p  177 (181)
                      .+++|+.+++++|+++ .++ .+ +.+++|++|+|++|+++ .++
T Consensus       171 ~l~~L~~L~Ls~n~l~-~l~-~l-~~l~~L~~L~Ls~N~lt-~i~  211 (227)
T d1h6ua2         171 NLSKLTTLKADDNKIS-DIS-PL-ASLPNLIEVHLKNNQIS-DVS  211 (227)
T ss_dssp             TCTTCCEEECCSSCCC-CCG-GG-GGCTTCCEEECTTSCCC-BCG
T ss_pred             ccccceecccCCCccC-CCh-hh-cCCCCCCEEECcCCcCC-CCc
Confidence            4677999999999988 455 35 88999999999999998 555

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.4e-13  Score=98.53  Aligned_cols=155  Identities=18%  Similarity=0.162  Sum_probs=87.2

Q ss_pred             CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCC-CcccCCCCCCcEEEcCC-C
Q 039018            2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKL-PTSFGRLREPRSISLSW-A   78 (181)
Q Consensus         2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~-~~~~~~l~~L~~L~l~~-n   78 (181)
                      +|..+.  +.++.|++++|.|+ .+|.          ..|.++++|++ ++++|.+...+ +..+..+++++.+.+.. |
T Consensus        23 iP~~l~--~~l~~L~Ls~n~i~-~l~~----------~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n   89 (242)
T d1xwdc1          23 IPSDLP--RNAIELRFVLTKLR-VIQK----------GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   89 (242)
T ss_dssp             CCSCSC--SCCSEEEEESCCCC-EECT----------TTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred             cCCCCC--CCCCEEECcCCcCC-ccCh----------hHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence            565553  46788888888887 3443          23556666666 66666655332 33455566666666543 4


Q ss_pred             cccccchhHhhhccCCCCCCCCccEEEcccccceeecCc--hhhccccccc--------------------------ccc
Q 039018           79 NKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPA--CISNSSARKE--------------------------VGY  130 (181)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~--~~~~~~~l~~--------------------------~~~  130 (181)
                      .+....+..+       ..+++|+.+++++|.++ ..+.  .+..+..+..                          .+.
T Consensus        90 ~l~~~~~~~~-------~~l~~L~~l~l~~~~l~-~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~  161 (242)
T d1xwdc1          90 NLLYINPEAF-------QNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN  161 (242)
T ss_dssp             TCCEECTTSE-------ECCTTCCEEEEESCCCC-SCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred             cccccccccc-------cccccccccccchhhhc-ccccccccccccccccccccccccccccccccccccccceeeecc
Confidence            4444444445       55666666666666554 1111  1111122111                          111


Q ss_pred             cc----------cCCcccEE-EccCCccccCCChhHHHhcccCCEeEecCCcccccCCCC
Q 039018          131 TS----------ILNLLRIT-DRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGS  179 (181)
Q Consensus       131 ~n----------~l~~L~~l-~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~  179 (181)
                      +|          ...++..+ ++++|.++ .+|...|.++++|+.|++++|.++ .+|..
T Consensus       162 ~n~l~~i~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~  219 (242)
T d1xwdc1         162 KNGIQEIHNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSY  219 (242)
T ss_dssp             SSCCCEECTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCC-CCCSS
T ss_pred             cccccccccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCC-ccCHH
Confidence            11          22333333 45667777 677665588999999999999998 66653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.41  E-value=9.4e-16  Score=107.34  Aligned_cols=108  Identities=18%  Similarity=0.210  Sum_probs=58.1

Q ss_pred             CCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCccccc
Q 039018            5 GPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQE   83 (181)
Q Consensus         5 ~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~   83 (181)
                      .+..+++|+.|++++|.|+ .++            .+..+++|+. ++++|.+. .++.....+++|++|++++|.+.. 
T Consensus        43 sl~~L~~L~~L~Ls~n~I~-~i~------------~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-  107 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIE-KIS------------SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-  107 (198)
T ss_dssp             HHHHTTTCCEEECSEEEES-CCC------------CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-
T ss_pred             HHhcccccceeECcccCCC-Ccc------------cccCCccccChhhcccccc-cccccccccccccccccccccccc-
Confidence            3445566666666666665 121            2455666666 66666665 444433344556666666665553 


Q ss_pred             chhHhhhccCCCCCCCCccEEEcccccceeecC--chhhcccccccccccccCCcccEEEccCCccc
Q 039018           84 ILEIFHSFSRDNWTLRSLQILDIACNNLSGAIP--ACISNSSARKEVGYTSILNLLRITDRSKNNFS  148 (181)
Q Consensus        84 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p--~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~  148 (181)
                      + +.+       ..+++|+.|++++|+++ .++  ..+..            +++|+.|++++|.+.
T Consensus       108 l-~~~-------~~l~~L~~L~L~~N~i~-~~~~~~~l~~------------l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         108 L-SGI-------EKLVNLRVLYMSNNKIT-NWGEIDKLAA------------LDKLEDLLLAGNPLY  153 (198)
T ss_dssp             H-HHH-------HHHHHSSEEEESEEECC-CHHHHHHHTT------------TTTCSEEEECSSHHH
T ss_pred             c-ccc-------cccccccccccccchhc-cccccccccC------------CCccceeecCCCccc
Confidence            2 223       45566666666666665 222  22333            334666666666664

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.40  E-value=1.7e-12  Score=98.18  Aligned_cols=114  Identities=23%  Similarity=0.276  Sum_probs=67.8

Q ss_pred             cccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhc---------------cCCCCCCCCccE
Q 039018           40 GLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSF---------------SRDNWTLRSLQI  103 (181)
Q Consensus        40 ~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~---------------~~~~~~~~~L~~  103 (181)
                      .+..+++|+. ++++|.+.+ ++ .+..+++|++++++++.+.+..+  +..+               ...+..+.+++.
T Consensus       236 ~l~~l~~L~~L~l~~n~l~~-~~-~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~  311 (384)
T d2omza2         236 TLASLTNLTDLDLANNQISN-LA-PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTY  311 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGGGGGCTTCSE
T ss_pred             hhhcccccchhccccCccCC-CC-cccccccCCEeeccCcccCCCCc--cccccccccccccccccccccccchhcccCe
Confidence            3556667777 777777763 32 36677777888777777653221  2000               001133445555


Q ss_pred             EEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccc
Q 039018          104 LDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE  174 (181)
Q Consensus       104 L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~  174 (181)
                      +++++|++++ ++. +..            +++|+.|++++|+++ .++ .+ +.+++|++|++++|.+++
T Consensus       312 L~ls~n~l~~-l~~-l~~------------l~~L~~L~L~~n~l~-~l~-~l-~~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         312 LTLYFNNISD-ISP-VSS------------LTKLQRLFFANNKVS-DVS-SL-ANLTNINWLSAGHNQISD  365 (384)
T ss_dssp             EECCSSCCSC-CGG-GGG------------CTTCCEEECCSSCCC-CCG-GG-GGCTTCCEEECCSSCCCB
T ss_pred             EECCCCCCCC-Ccc-ccc------------CCCCCEEECCCCCCC-CCh-hH-cCCCCCCEEECCCCcCCC
Confidence            5555555542 221 333            556888888888887 444 45 778888888888888874

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.38  E-value=9.5e-13  Score=99.61  Aligned_cols=83  Identities=24%  Similarity=0.295  Sum_probs=64.9

Q ss_pred             ccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEc
Q 039018           63 SFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDR  142 (181)
Q Consensus        63 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l  142 (181)
                      .+..+++++.+++++|.+.+..  .+       ..+++|+.|++++|+++ .++ .+..            +++|++|++
T Consensus       302 ~~~~~~~l~~L~ls~n~l~~l~--~l-------~~l~~L~~L~L~~n~l~-~l~-~l~~------------l~~L~~L~l  358 (384)
T d2omza2         302 PISNLKNLTYLTLYFNNISDIS--PV-------SSLTKLQRLFFANNKVS-DVS-SLAN------------LTNINWLSA  358 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCSCCG--GG-------GGCTTCCEEECCSSCCC-CCG-GGGG------------CTTCCEEEC
T ss_pred             ccchhcccCeEECCCCCCCCCc--cc-------ccCCCCCEEECCCCCCC-CCh-hHcC------------CCCCCEEEC
Confidence            3566677788888877776432  25       78899999999999997 444 4666            455999999


Q ss_pred             cCCccccCCChhHHHhcccCCEeEecCCc
Q 039018          143 SKNNFSGVLPAELVTDLVALRSLNLFHNH  171 (181)
Q Consensus       143 ~~n~~~~~~p~~~~~~l~~L~~L~L~~n~  171 (181)
                      ++|++++ ++. + ..+++|+.|+|++|.
T Consensus       359 ~~N~l~~-l~~-l-~~l~~L~~L~L~~Na  384 (384)
T d2omza2         359 GHNQISD-LTP-L-ANLTRITQLGLNDQA  384 (384)
T ss_dssp             CSSCCCB-CGG-G-TTCTTCSEEECCCEE
T ss_pred             CCCcCCC-Chh-h-ccCCCCCEeeCCCCc
Confidence            9999994 443 5 899999999999984

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3e-12  Score=85.89  Aligned_cols=110  Identities=15%  Similarity=0.019  Sum_probs=83.3

Q ss_pred             CCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccc-cccCCCCcccCCCCCCcEEEcCCCcccccc
Q 039018            7 ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYN-VLEGKLPTSFGRLREPRSISLSWANKSQEI   84 (181)
Q Consensus         7 ~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~   84 (181)
                      ..+...+.++.+++.+.            .+|..+..++++++ ++++| .++...+..|.++++|+.|++++|.+....
T Consensus         5 C~c~~~~~l~c~~~~~~------------~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~   72 (156)
T d2ifga3           5 CCPHGSSGLRCTRDGAL------------DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA   72 (156)
T ss_dssp             SCCSSSSCEECCSSCCC------------TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC
T ss_pred             CCcCCCCeEEecCCCCc------------cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcc
Confidence            44555677888888877            33445667778888 88655 477555567888999999999999998777


Q ss_pred             hhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccc
Q 039018           85 LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFS  148 (181)
Q Consensus        85 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~  148 (181)
                      +..|       ..+++|+.|++++|+++ .+|......            ..|++|++++|.+.
T Consensus        73 ~~~f-------~~l~~L~~L~Ls~N~l~-~l~~~~~~~------------~~l~~L~L~~Np~~  116 (156)
T d2ifga3          73 PDAF-------HFTPRLSRLNLSFNALE-SLSWKTVQG------------LSLQELVLSGNPLH  116 (156)
T ss_dssp             TTGG-------GSCSCCCEEECCSSCCS-CCCSTTTCS------------CCCCEEECCSSCCC
T ss_pred             cccc-------cccccccceeccCCCCc-ccChhhhcc------------ccccccccCCCccc
Confidence            7888       88999999999999998 666544332            23888999999885

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=4.2e-12  Score=85.14  Aligned_cols=102  Identities=16%  Similarity=0.052  Sum_probs=84.0

Q ss_pred             ccccccccCCCCcccCCCCCCcEEEcCCCc-ccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccc
Q 039018           50 SISYNVLEGKLPTSFGRLREPRSISLSWAN-KSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEV  128 (181)
Q Consensus        50 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~  128 (181)
                      +.+++.+. ..|..+..+++++.|++++|. +....+..|       ..+++|+.|++++|+++..-|..|..++     
T Consensus        14 ~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f-------~~l~~L~~L~Ls~N~l~~i~~~~f~~l~-----   80 (156)
T d2ifga3          14 RCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDL-------RGLGELRNLTIVKSGLRFVAPDAFHFTP-----   80 (156)
T ss_dssp             ECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGS-------CSCCCCSEEECCSSCCCEECTTGGGSCS-----
T ss_pred             EecCCCCc-cCcccccCccccCeeecCCCccccccCchhh-------ccccccCcceeeccccCCcccccccccc-----
Confidence            56777766 677888899999999997664 776666778       8899999999999999966677788744     


Q ss_pred             cccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCccc
Q 039018          129 GYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK  173 (181)
Q Consensus       129 ~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~  173 (181)
                             +|++|++++|+++ .+|..+|. ...|+.|+|++|.+.
T Consensus        81 -------~L~~L~Ls~N~l~-~l~~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          81 -------RLSRLNLSFNALE-SLSWKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             -------CCCEEECCSSCCS-CCCSTTTC-SCCCCEEECCSSCCC
T ss_pred             -------cccceeccCCCCc-ccChhhhc-cccccccccCCCccc
Confidence                   5999999999999 77877634 447999999999874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.32  E-value=8.9e-12  Score=88.27  Aligned_cols=141  Identities=18%  Similarity=0.193  Sum_probs=101.7

Q ss_pred             CCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccch
Q 039018            7 ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEIL   85 (181)
Q Consensus         7 ~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~   85 (181)
                      +.+.+|+.|++.+|.|+            .+ +++..+++|+. ++++|.+.+..  .+..+++++++++++|.+.. + 
T Consensus        38 ~~l~~L~~L~l~~~~i~------------~l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~-i-  100 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVT------------TI-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN-V-  100 (227)
T ss_dssp             HHHHTCCEEECTTSCCC------------CC-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC-C-
T ss_pred             HHcCCcCEEECCCCCCC------------cc-hhHhcCCCCcEeecCCceeeccc--cccccccccccccccccccc-c-
Confidence            34678899999999887            22 23678889988 89999887432  37888999999999887753 3 


Q ss_pred             hHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc---------cCCcccEEEccCCccccCCChhH
Q 039018           86 EIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS---------ILNLLRITDRSKNNFSGVLPAEL  155 (181)
Q Consensus        86 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n---------~l~~L~~l~l~~n~~~~~~p~~~  155 (181)
                      ..+       ..+++|+.++++++...+..  .+...+.+.. ....+         ..++|+++++++|.+.+ .+ .+
T Consensus       101 ~~l-------~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~-~l  169 (227)
T d1h6ua2         101 SAI-------AGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD-LT-PL  169 (227)
T ss_dssp             GGG-------TTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GG
T ss_pred             ccc-------cccccccccccccccccccc--hhccccchhhhhchhhhhchhhhhcccccccccccccccccc-ch-hh
Confidence            345       77888899998888765322  2333333333 11111         56779999999999873 33 35


Q ss_pred             HHhcccCCEeEecCCcccccCC
Q 039018          156 VTDLVALRSLNLFHNHFKEKFP  177 (181)
Q Consensus       156 ~~~l~~L~~L~L~~n~l~~~~p  177 (181)
                       +.+++|+.|+|++|.++ .+|
T Consensus       170 -~~l~~L~~L~Ls~n~l~-~l~  189 (227)
T d1h6ua2         170 -ANLSKLTTLKADDNKIS-DIS  189 (227)
T ss_dssp             -TTCTTCCEEECCSSCCC-CCG
T ss_pred             -cccccceecccCCCccC-CCh
Confidence             89999999999999998 454

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.6e-12  Score=91.77  Aligned_cols=159  Identities=21%  Similarity=0.205  Sum_probs=98.7

Q ss_pred             CCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-cc-ccccccCCCCcccCCCCCCcEEEcCCCcccc
Q 039018            5 GPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SI-SYNVLEGKLPTSFGRLREPRSISLSWANKSQ   82 (181)
Q Consensus         5 ~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l-~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~   82 (181)
                      .|.++++|++|++++|.+...++.          ..+.+++.++. .+ ..|.+....+..+..+++|+++++++|.+..
T Consensus        48 ~f~~l~~L~~L~ls~n~~~~~i~~----------~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          48 AFSGFGDLEKIEISQNDVLEVIEA----------DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             TTTTCTTCCEEEEESCTTCCEECS----------SSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCS
T ss_pred             Hhhccchhhhhhhccccccceeec----------cccccccccccccccccccccccccccccccccccccccchhhhcc
Confidence            578999999999999998754543          33455556555 33 3345554455556666777777776665542


Q ss_pred             cchhH-hh----------------hcc-CCCCCC-CCccEEEcccccceeecCchhhccccccc-c-cccc---------
Q 039018           83 EILEI-FH----------------SFS-RDNWTL-RSLQILDIACNNLSGAIPACISNSSARKE-V-GYTS---------  132 (181)
Q Consensus        83 ~~~~~-~~----------------~~~-~~~~~~-~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~-~~~n---------  132 (181)
                      ..+.. +.                .+. ..+..+ ..++.+++++|+++ .++.......++.+ . ..+|         
T Consensus       118 ~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~-~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~  196 (242)
T d1xwdc1         118 LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNCAFNGTQLDELNLSDNNNLEELPNDV  196 (242)
T ss_dssp             CCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTTTTTCCEEEEECTTCTTCCCCCTTT
T ss_pred             cccccccccccccccccccccccccccccccccccccceeeeccccccc-ccccccccchhhhccccccccccccccHHH
Confidence            21111 00                000 111333 47888899999887 45544444455444 2 2222         


Q ss_pred             --cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCC
Q 039018          133 --ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPG  178 (181)
Q Consensus       133 --~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~  178 (181)
                        .+++|++|++++|+++ .+|...|..++.|+.+++..  +. .+|.
T Consensus       197 f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~l~~~~--l~-~lp~  240 (242)
T d1xwdc1         197 FHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYN--LK-KLPT  240 (242)
T ss_dssp             TTTSCCCSEEECTTSCCC-CCCSSSCTTCCEEESSSEES--SS-CSCC
T ss_pred             hcCCCCCCEEECCCCcCC-ccCHHHHcCCcccccCcCCC--CC-cCCC
Confidence              5788999999999998 77765557888887777643  44 5664

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.27  E-value=7.2e-14  Score=97.56  Aligned_cols=115  Identities=24%  Similarity=0.280  Sum_probs=90.0

Q ss_pred             ccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceee
Q 039018           36 TISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGA  114 (181)
Q Consensus        36 ~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~  114 (181)
                      .++.++..+++|+. ++++|.++ .++ .+..+++|++|++++|.+. .++...       ..+..|+.|++++|+++ .
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~-------~~~~~L~~L~l~~N~i~-~  107 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLD-------AVADTLEELWISYNQIA-S  107 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHH-------HHHHHCCEEECSEEECC-C
T ss_pred             hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccc-------ccccccccccccccccc-c
Confidence            34566788999999 99999998 554 5888999999999999886 344444       44568999999999997 4


Q ss_pred             cCchhhcccccccccccccCCcccEEEccCCccccCCCh--hHHHhcccCCEeEecCCcccccC
Q 039018          115 IPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPA--ELVTDLVALRSLNLFHNHFKEKF  176 (181)
Q Consensus       115 ~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~--~~~~~l~~L~~L~L~~n~l~~~~  176 (181)
                      ++ .+..+            ++|++|++++|+++ .++.  .+ ..+++|+.|++++|.+....
T Consensus       108 l~-~~~~l------------~~L~~L~L~~N~i~-~~~~~~~l-~~l~~L~~L~L~~N~l~~~~  156 (198)
T d1m9la_         108 LS-GIEKL------------VNLRVLYMSNNKIT-NWGEIDKL-AALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             HH-HHHHH------------HHSSEEEESEEECC-CHHHHHHH-TTTTTCSEEEECSSHHHHHH
T ss_pred             cc-ccccc------------ccccccccccchhc-cccccccc-cCCCccceeecCCCccccCc
Confidence            43 35554            44999999999998 4443  44 88999999999999987443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.13  E-value=3.7e-10  Score=83.89  Aligned_cols=70  Identities=24%  Similarity=0.248  Sum_probs=44.9

Q ss_pred             CcCCCeeeccCcccccccCcccccc-----ccccCCccccc-ccchh-ccccccccCCCCcccCCCCCCcEEEcCCCccc
Q 039018            9 LSSLRYLDLSDNQFNSTIPEWISRI-----NCTISSGLGNL-TSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKS   81 (181)
Q Consensus         9 l~~L~~L~ls~n~i~~~~p~~~~~~-----~~~l~~~l~~l-~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~   81 (181)
                      .++|++|++++|+|+ .+|+.+..+     ..---..+..+ +.|++ ++++|.+. .+|. ++.+++|+.++++++.+.
T Consensus        57 ~~~L~~L~Ls~N~l~-~lp~~~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_          57 PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CTTCSEEECCSSCCS-SCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS
T ss_pred             CCCCCEEECCCCCCc-ccccchhhhhhhhhhhcccchhhhhccccccccccccccc-cccc-hhhhccceeecccccccc
Confidence            357888899988888 667654431     00000112222 24677 88888887 5664 577889999999888765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.3e-11  Score=90.49  Aligned_cols=150  Identities=14%  Similarity=0.080  Sum_probs=92.4

Q ss_pred             CCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCc-ccccc
Q 039018            7 ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWAN-KSQEI   84 (181)
Q Consensus         7 ~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~   84 (181)
                      .....|+.||+++|.+.+....          ..+.++++|++ .+++|.+.+..+..++.+++|++|+++++. ++...
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~----------~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~  112 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLH----------GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA  112 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHH----------HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHH
T ss_pred             ccCCCCCEEECCCCccCHHHHH----------HHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccc
Confidence            3456889999999887633222          22567788888 888888776666777888889999988753 43221


Q ss_pred             -hhHhhhccCCCCCCCCccEEEcccc-cceee-cCchhhc-cccccc-ccccc--------------cCCcccEEEccCC
Q 039018           85 -LEIFHSFSRDNWTLRSLQILDIACN-NLSGA-IPACISN-SSARKE-VGYTS--------------ILNLLRITDRSKN  145 (181)
Q Consensus        85 -~~~~~~~~~~~~~~~~L~~L~l~~n-~i~~~-~p~~~~~-~~~l~~-~~~~n--------------~l~~L~~l~l~~n  145 (181)
                       ....       ..+++|+.|+++++ .++.. +...+.. .+.|++ .+.+.              .+++|++|++++|
T Consensus       113 l~~l~-------~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~  185 (284)
T d2astb2         113 LQTLL-------SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS  185 (284)
T ss_dssp             HHHHH-------HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC
T ss_pred             cchhh-------HHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccc
Confidence             1222       45678888888775 34321 1111222 234544 22211              4567777888775


Q ss_pred             -ccccCCChhHHHhcccCCEeEecCC-cccc
Q 039018          146 -NFSGVLPAELVTDLVALRSLNLFHN-HFKE  174 (181)
Q Consensus       146 -~~~~~~p~~~~~~l~~L~~L~L~~n-~l~~  174 (181)
                       .+++..+..+ ..+++|++|+++++ .+++
T Consensus       186 ~~itd~~~~~l-~~~~~L~~L~L~~C~~i~~  215 (284)
T d2astb2         186 VMLKNDCFQEF-FQLNYLQHLSLSRCYDIIP  215 (284)
T ss_dssp             TTCCGGGGGGG-GGCTTCCEEECTTCTTCCG
T ss_pred             cCCCchhhhhh-cccCcCCEEECCCCCCCCh
Confidence             4555555566 67777788887773 4543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.94  E-value=1.6e-10  Score=86.44  Aligned_cols=120  Identities=16%  Similarity=0.029  Sum_probs=68.9

Q ss_pred             cccccchh-ccccccccCC-----CCcccCCCCCCcEEEcCCCcccccc----hhHhhhccCCCCCCCCccEEEcccccc
Q 039018           42 GNLTSLKH-SISYNVLEGK-----LPTSFGRLREPRSISLSWANKSQEI----LEIFHSFSRDNWTLRSLQILDIACNNL  111 (181)
Q Consensus        42 ~~l~~L~~-~l~~n~~~~~-----~~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~~~~~~~~~~~L~~L~l~~n~i  111 (181)
                      .....++. ++++|.+...     +...+..+++|+.|++++|.+....    ...+       ..+++|+.|++++|.+
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l-------~~~~~L~~L~Ls~n~i  255 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL-------KSWPNLRELGLNDCLL  255 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG-------GGCTTCCEEECTTCCC
T ss_pred             hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccc-------cccccchhhhhhcCcc
Confidence            34455666 6666665421     2233455666777777766654322    2223       4566677777777766


Q ss_pred             eeecCchhhcccccccccccccCCcccEEEccCCccccC----CChhHHHhcccCCEeEecCCcccc
Q 039018          112 SGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGV----LPAELVTDLVALRSLNLFHNHFKE  174 (181)
Q Consensus       112 ~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~----~p~~~~~~l~~L~~L~L~~n~l~~  174 (181)
                      ++.....++..-      .......|++|++++|.++..    +.+.+..+.+.|+.|+|++|.+..
T Consensus       256 ~~~g~~~l~~~l------~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         256 SARGAAAVVDAF------SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CHHHHHHHHHHH------HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             CchhhHHHHHHh------hhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            533222221100      000134699999999998753    233342357789999999999874

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=4e-10  Score=82.34  Aligned_cols=129  Identities=18%  Similarity=0.123  Sum_probs=91.9

Q ss_pred             ccccchh-ccccccccCC-CCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccc-cceee-cCch
Q 039018           43 NLTSLKH-SISYNVLEGK-LPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACN-NLSGA-IPAC  118 (181)
Q Consensus        43 ~l~~L~~-~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~i~~~-~p~~  118 (181)
                      ...+|++ +++++.+... +...+..+++|++|+++++.+....+..+       .++++|+.|+++++ .+++. +..-
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l-------~~~~~L~~L~Ls~c~~itd~~l~~l  116 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL-------AKNSNLVRLNLSGCSGFSEFALQTL  116 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH-------TTCTTCSEEECTTCBSCCHHHHHHH
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHH-------hcCCCCcCccccccccccccccchh
Confidence            4567888 9999887644 34456789999999999998887777888       88999999999985 56532 2233


Q ss_pred             hhccccccc-ccccc--------------cCCcccEEEccCC--ccccCCChhHHHhcccCCEeEecCC-cccccCCC
Q 039018          119 ISNSSARKE-VGYTS--------------ILNLLRITDRSKN--NFSGVLPAELVTDLVALRSLNLFHN-HFKEKFPG  178 (181)
Q Consensus       119 ~~~~~~l~~-~~~~n--------------~l~~L~~l~l~~n--~~~~~~p~~~~~~l~~L~~L~L~~n-~l~~~~p~  178 (181)
                      ...+++|++ .+.++              ..+.|+.++++++  .++......++..+++|+.|++++| .+++..+.
T Consensus       117 ~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~  194 (284)
T d2astb2         117 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ  194 (284)
T ss_dssp             HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG
T ss_pred             hHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhh
Confidence            456788888 44332              3578999999875  3443223344477899999999985 46654443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.84  E-value=4.1e-10  Score=84.19  Aligned_cols=40  Identities=23%  Similarity=0.159  Sum_probs=21.8

Q ss_pred             CCcccEEEccCCccccCCChhHHH---h--cccCCEeEecCCccc
Q 039018          134 LNLLRITDRSKNNFSGVLPAELVT---D--LVALRSLNLFHNHFK  173 (181)
Q Consensus       134 l~~L~~l~l~~n~~~~~~p~~~~~---~--l~~L~~L~L~~n~l~  173 (181)
                      .+.|++|++++|.+++.....++.   .  ...|+.|++++|.++
T Consensus       242 ~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         242 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             cccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            445667777777665432222211   1  134667777777664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.80  E-value=5.5e-08  Score=71.82  Aligned_cols=61  Identities=26%  Similarity=0.295  Sum_probs=48.6

Q ss_pred             CCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccC
Q 039018           97 TLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKF  176 (181)
Q Consensus        97 ~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~  176 (181)
                      .+++|++|++++|+++ .+|+.+               ++|+.|++++|+++ .+|+    .+++|+.|++++|+++ .+
T Consensus       282 ~~~~L~~L~Ls~N~l~-~lp~~~---------------~~L~~L~L~~N~L~-~l~~----~~~~L~~L~L~~N~L~-~l  339 (353)
T d1jl5a_         282 LPPSLEELNVSNNKLI-ELPALP---------------PRLERLIASFNHLA-EVPE----LPQNLKQLHVEYNPLR-EF  339 (353)
T ss_dssp             CCTTCCEEECCSSCCS-CCCCCC---------------TTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS-SC
T ss_pred             cCCCCCEEECCCCccC-cccccc---------------CCCCEEECCCCcCC-cccc----ccCCCCEEECcCCcCC-CC
Confidence            4578999999999988 777643               34889999999998 7774    3567999999999998 67


Q ss_pred             CCC
Q 039018          177 PGS  179 (181)
Q Consensus       177 p~~  179 (181)
                      |..
T Consensus       340 p~~  342 (353)
T d1jl5a_         340 PDI  342 (353)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=4.4e-09  Score=80.37  Aligned_cols=15  Identities=27%  Similarity=0.144  Sum_probs=9.5

Q ss_pred             CcCCCeeeccCcccc
Q 039018            9 LSSLRYLDLSDNQFN   23 (181)
Q Consensus         9 l~~L~~L~ls~n~i~   23 (181)
                      ...++.+++++|.+.
T Consensus       254 ~~~l~~l~l~~n~i~  268 (460)
T d1z7xw1         254 SSRLRTLWIWECGIT  268 (460)
T ss_dssp             TCCCCEEECTTSCCC
T ss_pred             ccccccccccccccc
Confidence            345666777776665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=3.7e-09  Score=70.80  Aligned_cols=84  Identities=18%  Similarity=0.112  Sum_probs=59.4

Q ss_pred             cCCCCCCcEEEcCCCccccc--chhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEE
Q 039018           64 FGRLREPRSISLSWANKSQE--ILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITD  141 (181)
Q Consensus        64 ~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~  141 (181)
                      ...+++|++|++++|.+...  ++..+       ..+++|+.|++++|.++ .+++ +..+.          ...|+.++
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~-------~~l~~L~~L~Ls~N~i~-~l~~-l~~l~----------~~~L~~L~  121 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIV-------QKAPNLKILNLSGNELK-SERE-LDKIK----------GLKLEELW  121 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHH-------HHSTTCCCCCCTTSCCC-CGGG-HHHHT----------TCCCSSCC
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHH-------hhCCcccccccccCccc-cchh-hhhhh----------ccccceee
Confidence            34678899999999998753  34455       67899999999999997 4443 22222          22488899


Q ss_pred             ccCCccccCCCh------hHHHhcccCCEeE
Q 039018          142 RSKNNFSGVLPA------ELVTDLVALRSLN  166 (181)
Q Consensus       142 l~~n~~~~~~p~------~~~~~l~~L~~L~  166 (181)
                      +++|.+......      .++..+|+|+.||
T Consensus       122 L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         122 LDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             CTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             cCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            999998754332      2347789999887

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=2.2e-08  Score=76.39  Aligned_cols=113  Identities=13%  Similarity=0.083  Sum_probs=70.6

Q ss_pred             CCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccC----CCCcccCCCCCCcEEEcCCCcccccch
Q 039018           11 SLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEG----KLPTSFGRLREPRSISLSWANKSQEIL   85 (181)
Q Consensus        11 ~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~   85 (181)
                      .|+.||+++|++++..-.          .-+..++++++ ++++|.++.    .++..+..+++|+.||+++|.+.....
T Consensus         3 ~l~~ld~~~~~i~~~~~~----------~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~   72 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWA----------ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV   72 (460)
T ss_dssp             EEEEEEEESCCCCHHHHH----------HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH
T ss_pred             CCCEEEeeCCcCChHHHH----------HHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHH
Confidence            578899999998732111          22345677777 888887763    234445678889999998887753222


Q ss_pred             hHhhhccCCCC-CCCCccEEEcccccceee----cCchhhcccccccccccccCCcccEEEccCCccc
Q 039018           86 EIFHSFSRDNW-TLRSLQILDIACNNLSGA----IPACISNSSARKEVGYTSILNLLRITDRSKNNFS  148 (181)
Q Consensus        86 ~~~~~~~~~~~-~~~~L~~L~l~~n~i~~~----~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~  148 (181)
                      ..+   .+.+. ...+|+.|++++|++++.    ++..+..            .++|++|++++|.+.
T Consensus        73 ~~l---~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~------------~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          73 HCV---LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT------------LPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHH---HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTS------------CTTCCEEECCSSBCH
T ss_pred             HHH---HHHHhcCCCCCCEEECCCCCccccccccccchhhc------------cccccccccccccch
Confidence            222   11112 235788899998888643    2233333            345777888777765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=4.4e-07  Score=60.38  Aligned_cols=68  Identities=19%  Similarity=0.068  Sum_probs=49.0

Q ss_pred             cccccchh-ccccccccCC--CCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecC
Q 039018           42 GNLTSLKH-SISYNVLEGK--LPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIP  116 (181)
Q Consensus        42 ~~l~~L~~-~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p  116 (181)
                      ..++.|++ ++++|.++..  ++..+..+++|+.|++++|.+....+-.+       .+...|+.+++++|++.....
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~-------l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-------IKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHH-------HTTCCCSSCCCTTSTTSSSSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhh-------hhccccceeecCCCCcCcCcc
Confidence            46788888 8999998843  22445678999999999999875433333       345678899999998875443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.78  E-value=4.6e-06  Score=55.52  Aligned_cols=94  Identities=10%  Similarity=0.121  Sum_probs=43.6

Q ss_pred             CCcCCCeeeccCc-ccccccCccccccccccCCcccccccchh-ccccccccCC----CCcccCCCCCCcEEEcCCCccc
Q 039018            8 NLSSLRYLDLSDN-QFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGK----LPTSFGRLREPRSISLSWANKS   81 (181)
Q Consensus         8 ~l~~L~~L~ls~n-~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~   81 (181)
                      +.++|+.|+++++ .+....-.       .+...+...+.|+. ++++|.+...    +.+.+...+.|+.|++++|.+.
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~-------~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIR-------SLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHH-------HHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCCCcEEEeCCCCCCCHHHHH-------HHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            4577888888874 45422111       11223444455555 5555555422    1122333455566666655554


Q ss_pred             ccchhHhhhccCCCCCCCCccEEEcccccc
Q 039018           82 QEILEIFHSFSRDNWTLRSLQILDIACNNL  111 (181)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i  111 (181)
                      ......+   .+.+...++|+.|++++|.+
T Consensus        86 ~~g~~~l---~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          86 PELLARL---LRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HHHHHHH---HHHTTTTCCCSEEECCCCSS
T ss_pred             hHHHHHH---HHHHHhCCcCCEEECCCCcC
Confidence            3222211   11114445555555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.55  E-value=3.6e-06  Score=56.08  Aligned_cols=99  Identities=12%  Similarity=0.019  Sum_probs=64.6

Q ss_pred             CCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCC----CCcccCCCCCCcEEEcCCCcc
Q 039018            6 PENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGK----LPTSFGRLREPRSISLSWANK   80 (181)
Q Consensus         6 ~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~   80 (181)
                      +...++|+.|++++|.+......       .+...+...+.|++ ++++|.++..    +...+...++|+.|++++|..
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~-------~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEAR-------GLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHT-------THHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             HhhCCccceeeccccccchhHHH-------HHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcC
Confidence            45567899999999999744333       23345667788999 9999998753    344567778999999998865


Q ss_pred             cccchhHhhhccCCCCCCCCccEEEcccccc
Q 039018           81 SQEILEIFHSFSRDNWTLRSLQILDIACNNL  111 (181)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i  111 (181)
                      .....+....+...+...++|+.++++.+..
T Consensus       113 ~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         113 SVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             CCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             CCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            4322222111111114556777777766543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.33  E-value=2.7e-05  Score=51.45  Aligned_cols=92  Identities=10%  Similarity=0.060  Sum_probs=45.4

Q ss_pred             cCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecC----chhhcccccccccccccCCcccE
Q 039018           64 FGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIP----ACISNSSARKEVGYTSILNLLRI  139 (181)
Q Consensus        64 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p----~~~~~~~~l~~~~~~n~l~~L~~  139 (181)
                      +...++|+.|++++|.+.......+.+..   .....++.++++.|.++....    ..+..            .++|+.
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l---~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~------------~~~L~~  106 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEML---KVNNTLKSLNVESNFISGSGILALVEALQS------------NTSLIE  106 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHH---HHCSSCCEEECCSSCCCHHHHHHHHHGGGG------------CSSCCE
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHH---hhcccchhhhhccccccchhHHHHHHHHHh------------CccccE
Confidence            34556667777777765533222221111   345667777777766642211    12222            233554


Q ss_pred             EEc--cCCccccC----CChhHHHhcccCCEeEecCCc
Q 039018          140 TDR--SKNNFSGV----LPAELVTDLVALRSLNLFHNH  171 (181)
Q Consensus       140 l~l--~~n~~~~~----~p~~~~~~l~~L~~L~L~~n~  171 (181)
                      +++  ++|.+...    +.+.+ ...+.|+.|+++.+.
T Consensus       107 l~L~l~~n~i~~~~~~~La~~L-~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         107 LRIDNQSQPLGNNVEMEIANML-EKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             EECCCCSSCCCHHHHHHHHHHH-HHCSSCCEEECCCSS
T ss_pred             EeeccCCCcCcHHHHHHHHHHH-HhCCCcCEEeCcCCC
Confidence            433  44555432    22233 456677777776554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.34  E-value=0.0017  Score=42.39  Aligned_cols=98  Identities=13%  Similarity=0.087  Sum_probs=59.6

Q ss_pred             CCCCCCcEEEcCC-CcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEcc
Q 039018           65 GRLREPRSISLSW-ANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRS  143 (181)
Q Consensus        65 ~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~  143 (181)
                      .+.++|+.|++++ +.+...   .+..+...+...++|+.|++++|.++......++..-.        ..++++.++++
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~---~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~--------~~~~l~~l~l~   82 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVP---TLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK--------VNNTLKSLNVE   82 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHH---HHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH--------HCSSCCEEECC
T ss_pred             hcCCCCcEEEcCCCCCCCHH---HHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHh--------hcccchhhhhc
Confidence            4567899999987 445422   22222222267899999999999987433222221110        14569999999


Q ss_pred             CCccccCCChhHH---HhcccCCEeEe--cCCccc
Q 039018          144 KNNFSGVLPAELV---TDLVALRSLNL--FHNHFK  173 (181)
Q Consensus       144 ~n~~~~~~p~~~~---~~l~~L~~L~L--~~n~l~  173 (181)
                      +|.+.......++   ...+.|+.++|  ++|.+.
T Consensus        83 ~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          83 SNFISGSGILALVEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             SSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             cccccchhHHHHHHHHHhCccccEEeeccCCCcCc
Confidence            9988754333332   45567887555  456664