Citrus Sinensis ID: 039042

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520------
Protein Sequence
GLFLEKLEKYRIRSGDWYWESTNIWRREFRLRLNNKICLKDWLILQLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVFRCYDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTPVLHKVQLNRWDEACW
Secondary Structure (PSIPRED)
ccccccccEEEEEEcccccccccccccEEEEEEccEEEEHHHHHHccccccEEEEcccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHccccccccEEEcccccccccEEccccccEEEcccEEEEEEcccccccccccccccEEEEEcccccccccccccccccccccccEEEEEEcccccEEEEcccccccccccccccccccEEEEcccccccccccccccccccccccEEEEccccccccccccccccccccccccccEEEEcccccccccccccccccccccEEEEEcccccccccccHHHHcccccEEEEEEcccccccccccccccccEEEEEEcccccccccccccccccccccEEEEccccccccccccccccccccEEEEEcccccccccccccccccccccEEEEcccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccccEEEEEcccccccccccccccccccEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccHHHcEEEEEEEcccccccccccccEEEEEccccccHHHHHHHHHHcHHHccHHHcccccccEccHHcccccccccEEEEEcccHHcccccHHHHHHHHHHcccccccHEEEEccccccccccccccHHHEEEccccHHHHHccccccccccccccEEEEEEcccccHEEcccHHcccccHHHcEEEEEcccHcHHEEEccccccccccccEEEccccEEEEEcccHHHHHcccccccccccccccEEEEEcccccEEEccccccccHHHHcccHHHEEEccHccccccccccHcHcccccEEEEcccHccccccccccHHHHcccccEEEEcccccccccccHHHHHHHHHHHHcccccccHHccccccccccccHcEccccHHHHccccccccccccEEEEEcccccHHHcccHHHHHHHHHHcEEEEccHHHHHEEEEcccccccccccccEEEcccccEEEEcccccccHccccccccccccccEEEEEcccccEEEccccccccccEEEEEcccccccc
Coil and Loop (DISEMBL)
GLFLEKLEKYRirsgdwywesTNIWRREFRLRLNNKICLKDWLILQLQGIEDLELHELQEQDVNYFANELVRVgssqlkflgihgcrdalnpsaeskRQRQEESANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTCgiqnlthltlyncmnlrclfssctvsnnsfvRLQYIRIEKCHVLEELIvvdnqeeerknnivmfpqlqylkmydlekltsfctgdvhmlefpslkelwisRCPEFMVRFKRttndltkkvfpNLEELIVDAEYIITNKFIFSEDLLCklkcldveFVDELTTILSLDDFLQRFPTLKVLqiegysdwlpkekveNGMEVIIRRVFRCYDLKYILKQESSIMNNLVILHVTNCHrlinlvpsstsfqnlTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIvladddddhdaAKDEVIAFSELNELKLLNLKSLRsfysgnralnfpslerllvddctnmkgfsrgelstpvlHKVQLnrwdeacw
Flexible Loop (DISEMBL)
glfleklekyrirsgdwywestnIWRREFRLRLNNKICLKDWLILQLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVvdnqeeerknniVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKrttndltkkvfpnLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQiegysdwlpkekvengMEVIIRRVFRCYDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSgnralnfpsleRLLVDDCTNMKgfsrgelstpvlhkvqlnrwdeacw
Low Complexity Region (SEG)
GLFLEKLEKYRIRSGDWYWESTNIWRREFRLRLNNKICLKDWLILQLQGIedlelhelqeqdVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTlflekleklelRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVFRCYDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLadddddhdaakdEVIAFselnelkllnlkslRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTPVLHKVQLNRWDEACW
Disordered region (IsUnstruct)
**FLEKLEKYRIRSGDWYWESTNIWRREFRLRLNNKICLKDWLILQLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRD*************************ILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVFRCYDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTPVLHKVQLNRWD****
Disordered Region (DISOPRED)
GLFLEKLEKYRIRSGDWYWESTNIWRREFRLRLNNKICLKDWLILQLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPS***********ANDMQSNELILE************KLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDN***********FPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKV*NGMEVIIRRVFRCYDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDD******KDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTPVLHKVQLNRWDEACW
Disordered Region (DISEMBL)
GLFLEKLEKYRIRSGDWYWESTNIWRREFRLRLNNKICLKDWLILQLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALN*****************QSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVFRCYDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTPVLHKVQLNRWDEACW
Disordered Region (DISPRO)
GLFLEKLEKYRIRSGDWYWESTNIWRREFRLRLNNKICLKDWLILQLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVFRCYDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTPVLHKVQLNRW*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GLFLEKLEKYRIRSGDWYWESTNIWRREFRLRLNNKICLKDWLILQLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVFRCYDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTPVLHKVQLNRWDEACW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	526	2.2.26 [Sep-21-2011]
Q8RXS5	888	Probable disease resistan	yes	no	0.209	0.123	0.272	6e-06
Q9C8T9	898	Putative disease resistan	no	no	0.230	0.134	0.296	7e-06
O64973	889	Disease resistance protei	no	no	0.249	0.147	0.278	4e-05
P60838	894	Probable disease resistan	no	no	0.195	0.115	0.276	0.0004

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score = 52.8 bits (125), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 11/121 (9%)

Query: 392 VPSSTSF-QNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDH 450
           +P++T+F  NL+ + + +C  L+++     A  L  LR   + S + + E++     +  
Sbjct: 731 IPTTTTFFPNLSQVSLEFCTRLRDLTWLIFAPNLTVLR---VISASDLKEVI-----NKE 782

Query: 451 DAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELST 510
            A +  +I F EL EL+L N++ L+  + G   L FP L+++LV+ C+ ++       S 
Sbjct: 783 KAEQQNLIPFQELKELRLENVQMLKHIHRG--PLPFPCLQKILVNGCSELRKLPLNFTSV 840

Query: 511 P 511
           P
Sbjct: 841 P 841

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8T9|DRL19_ARATH Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana GN=At1g63350 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 7/128 (5%)

Query: 374 MNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIE 433
           M+ L    + +CH     +    SF +L  + +S C  L+ +     A  L RL    + 
Sbjct: 710 MDRLQEFTIEHCHTSEIKMGRICSFSSLIEVNLSNCRRLRELTFLMFAPNLKRLH---VV 766

Query: 434 SCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLL 493
           S   + +I+  + +  HD  K  ++ F +LNEL L NL+ L++ Y     L FP LE++ 
Sbjct: 767 SSNQLEDII--NKEKAHDGEKSGIVPFPKLNELHLYNLRELKNIYWS--PLPFPCLEKIN 822

Query: 494 VDDCTNMK 501
           V  C N+K
Sbjct: 823 VMGCPNLK 830

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score = 50.4 bits (119), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 27/158 (17%)

Query: 362 DLKYILKQES------SIMNNLVILHVTNCH-RLI-----------NLVPSSTSFQNLTS 403
           D KY LK+ES        M NL  L +  C  R I           N  P++  F NL+ 
Sbjct: 691 DFKY-LKEESVRVLTLPTMGNLRKLGIKRCGMREIKIERTTSSSSRNKSPTTPCFSNLSR 749

Query: 404 LEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSEL 463
           + I+ C+GLK++     A  L  L   ++     + +I+  +  ++H A    ++ F +L
Sbjct: 750 VFIAKCHGLKDLTWLLFAPNLTFL---EVGFSKEVEDIISEEKAEEHSAT---IVPFRKL 803

Query: 464 NELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMK 501
             L L  L+ L+  Y+  +AL+FP L+ + V+ C  ++
Sbjct: 804 ETLHLFELRGLKRIYA--KALHFPCLKVIHVEKCEKLR 839

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score = 47.0 bits (110), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 9/112 (8%)

Query: 390 NLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDD 449
           N  P +    NL+++ IS C+GLK++     A  L  L         + +E+V    + +
Sbjct: 736 NRSPKTQFLHNLSTVHISSCDGLKDLTWLLFAPNLTSLE-------VLDSELVEGIINQE 788

Query: 450 HDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMK 501
                  +I F +L  L+L NL  LRS Y   + L+FP L+ + +  C  ++
Sbjct: 789 KAMTMSGIIPFQKLESLRLHNLAMLRSIYW--QPLSFPCLKTIHITKCPELR 838

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	526
147787802	1517	hypothetical protein VITISV_005047 [Viti	0.788	0.273	0.311	2e-38
147865073	1694	hypothetical protein VITISV_021876 [Viti	0.889	0.276	0.287	4e-38
328447253	3695	Rpp4 candidate R10 [Glycine max]	0.756	0.107	0.302	3e-35
302143659	922	unnamed protein product [Vitis vinifera]	0.712	0.406	0.316	2e-34
302143647	759	unnamed protein product [Vitis vinifera]	0.825	0.571	0.298	3e-34
255542484	2460	phosphoprotein phosphatase, putative [Ri	0.707	0.151	0.308	2e-32
359488101	1677	PREDICTED: disease resistance protein At	0.711	0.223	0.312	3e-32
147802546	1409	hypothetical protein VITISV_007222 [Viti	0.884	0.330	0.289	7e-32
356522570	2300	PREDICTED: uncharacterized protein LOC10	0.684	0.156	0.284	1e-31
356566878	2804	PREDICTED: uncharacterized protein LOC10	0.754	0.141	0.294	3e-31

>gi|147787802|emb|CAN71755.1| hypothetical protein VITISV_005047 [Vitis vinifera]

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 150/481 (31%), Positives = 241/481 (50%), Gaps = 66/481 (13%)

Query: 76   SQLKFLGIHGCRDALNPSAESKRQRQEE----SANDMQSNELILE---DNANISNTLFLE 128
            S+LK + +  C + LN    S   R +      A D  S E + +    N N+   + + 
Sbjct: 968  SKLKRVKVATCGELLNIFPSSMLNRLQSLRFLKAEDCSSLEEVFDVEGTNVNVKEGVTVT 1027

Query: 129  KLEKLELRSI-NIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQ 187
            +L +L LRS+  +E+IW N+        QNL  +T+  C +L+ LF +  V +   V+LQ
Sbjct: 1028 QLSQLILRSLPKVEKIW-NEDPHGILNFQNLQSITIDECQSLKNLFPASLVRD--LVQLQ 1084

Query: 188  YIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSL 247
             + +  C + EE++  DN  + +     +FP++  L++  L +L SF  G  H   +PSL
Sbjct: 1085 ELHVLCCGI-EEIVAKDNGVDTQAT--FVFPKVTSLELSYLHQLRSFYPG-AHPSWWPSL 1140

Query: 248  KELWISRC----------PEFMVRFKRTTNDLTKKV-----FPNLEELIVDAEYIITNKF 292
            K+L +  C          P F  R      D+   +     FPNLEEL +D      +  
Sbjct: 1141 KQLTVRECYKVNVFAFENPTFRQRHHEGNLDMPLSLLQPVEFPNLEELTLDHN---KDTE 1197

Query: 293  IFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEV 352
            I+ E             VD    +  LDD +Q     +V Q+EG  +       EN  + 
Sbjct: 1198 IWPEQFP----------VDSFPRLRVLDDVIQ---FKEVFQLEGLDN-------ENQAKR 1237

Query: 353  I--IRRVFRC--YDLKYILKQESSIMNNLVIL---HVTNCHRLINLVPSSTSFQNLTSLE 405
            +  +R ++ C   +L ++ K+ S    +L+ L    V NC RLINLVPSS SFQNL +L+
Sbjct: 1238 LGRLREIWLCDLPELTHLWKENSKPGLDLLSLKSLEVRNCVRLINLVPSSASFQNLATLD 1297

Query: 406  ISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNE 465
            +  C  L+++++ S+AK+LV+L+ +KI    M+ E+V  ++ +    A DE IAF +L  
Sbjct: 1298 VQSCGSLRSLISPSVAKSLVKLKTLKIGGSHMMEEVVANEEGE----AADE-IAFCKLQH 1352

Query: 466  LKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTPVLHKVQLNRWDEAC 525
            + L  L +L SF SG    +FPSLE +++  C  MK FS G ++TP L ++++   DE  
Sbjct: 1353 MALKCLSNLTSFSSGGYIFSFPSLEHMVLKKCPKMKIFSPGLVTTPRLERIKVGD-DEWH 1411

Query: 526  W 526
            W
Sbjct: 1412 W 1412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865073|emb|CAN83232.1| hypothetical protein VITISV_021876 [Vitis vinifera]

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 156/543 (28%), Positives = 267/543 (49%), Gaps = 75/543 (13%)

Query: 29   FRLRLNNKICLKDWLILQLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRD 88
            F +  N ++       L + G+++++           + N++ +   S+L+ + +  C +
Sbjct: 1078 FPVLFNERVAFPSLKFLIISGLDNVK---------KIWHNQIPQDSFSKLEVVKVASCGE 1128

Query: 89   ALN--PSAESKRQ---RQEESANDMQSNELILEDNANISNTLFLEKLEKLELRSI-NIER 142
             LN  PS   KR    R  E  +     E+   +  N++  + +  L +L LR +  +E+
Sbjct: 1129 LLNIFPSCVLKRSQSLRLMEVVDCSLLEEVFDVEGTNVNEGVTVTHLSRLILRLLPKVEK 1188

Query: 143  IWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIV 202
            IW N+        QNL  + +  C +L+ LF +  V +   V+L+ +++  C + EE++ 
Sbjct: 1189 IW-NKDPHGILNFQNLKSIFIDKCQSLKNLFPASLVKD--LVQLEKLKLRSCGI-EEIVA 1244

Query: 203  VDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRC------- 255
             DN+ E       +FP++  LK++ L +L SF  G  H  ++P LKEL +  C       
Sbjct: 1245 KDNEAETAAK--FVFPKVTSLKLFHLHQLRSFYPG-AHTSQWPLLKELIVRACDKVNVFA 1301

Query: 256  ---PEFMVRFKRTTND---------LTKKVFPNLEELIVDAEYIITNKFIFSE----DLL 299
               P F  R    + D         L +  FP LEELI+D      N  I+ E    D  
Sbjct: 1302 SETPTFQRRHHEGSFDMPILQPLFLLQQVGFPYLEELILDDN---GNTEIWQEQFPMDSF 1358

Query: 300  CKLKCLDVE-FVDELTTILSLDDFLQRFPTLK------------VLQIEGYSDWLPKEKV 346
             +L+CL+V  + D L  I S    LQR   L+            + Q+EG  +    +++
Sbjct: 1359 PRLRCLNVRGYGDILVVIPSF--MLQRLHNLEKLDVRRCSSVKEIFQLEGLDEENQAQRL 1416

Query: 347  ENGMEVIIRRVFRCYDLKYILKQESSI---MNNLVILHVTNCHRLINLVPSSTSFQNLTS 403
                E+I+  +     L ++ K+ S     + +L  L V +C+ LI+LVP S SFQNL +
Sbjct: 1417 GRLREIILGSL---PALTHLWKENSKSGLDLQSLESLEVWSCNSLISLVPCSVSFQNLDT 1473

Query: 404  LEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSEL 463
            L++  C+ L+++++ S+AK+LV+LR++KI    M+ E+V  +  +  D      IAF +L
Sbjct: 1474 LDVWSCSSLRSLISPSVAKSLVKLRKLKIGGSHMMEEVVANEGGEVVDE-----IAFYKL 1528

Query: 464  NELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTPVLHKVQLNRWDE 523
              + LL L +L SF SG    +FPSLE ++V++C  MK FS   ++TP L +V++   DE
Sbjct: 1529 QHMVLLCLPNLTSFNSGGYIFSFPSLEHMVVEECPKMKIFSPSFVTTPKLERVEVAD-DE 1587

Query: 524  ACW 526
              W
Sbjct: 1588 WHW 1590

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|328447253|gb|AEB06131.1| Rpp4 candidate R10 [Glycine max]

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 130/430 (30%), Positives = 214/430 (49%), Gaps = 32/430 (7%)

Query: 117  DNANISNTLFLEKLEKLELRSI-NIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSS 175
            D+ + +    +  L+KL L+ + N++ +W N+         NL  + +  C +L  LF  
Sbjct: 2745 DDTDANTKGMVLPLKKLILKDLSNLKCVW-NKTPRGILSFPNLQLVFVTKCRSLATLFPL 2803

Query: 176  CTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFC 235
                N  FV+L+ + +E+C  L E++  ++  E     I  FP L  L +Y L  L+ F 
Sbjct: 2804 SLARN--FVKLKRLIVERCEKLVEIVGKEDAMEHGTTEIFEFPCLWKLFLYKLSLLSCFY 2861

Query: 236  TGDVHMLEFPSLKELWISRCPE---FMVRFKRTTND--------LTKKVFPNLEELIVDA 284
             G  H LE P LK L +S CP+   F   F  +  +        + +KV P L+EL ++ 
Sbjct: 2862 PGK-HHLECPVLKCLDVSYCPKLKLFTSEFHNSRKEAVIEQPLFMVEKVDPKLKELTLNE 2920

Query: 285  EYIIT-NKFIFSEDLLCKLKCLDVEFVDELTTILSLD-DFLQRFPTLKVLQIE---GYSD 339
            E II         D LCKL  LD+ F D      +L  DFL + P+++ L+++   G  +
Sbjct: 2921 ENIILLRDAHLPHDFLCKLNILDLSFDDYENKKDTLPFDFLHKVPSVECLRVQRCYGLKE 2980

Query: 340  WLPKEKVENGMEVIIR----RVFRCYDLKYILKQESSIMN---NLVILHVTNCHRLINLV 392
              P +K++    ++ R     +F+  +L+ I  +   +      L  L +  C RL  +V
Sbjct: 2981 IFPSQKLQVHHRILARLNELYLFKLKELESIGLEHPWVKPYSAKLETLEIRKCSRLEKVV 3040

Query: 393  PSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDA 452
              + SF +L  L++S C  ++ + T S AK+LV+L+ + IE C  I EIV  +D+ D   
Sbjct: 3041 SCAVSFSSLKELQVSECERMEYLFTSSTAKSLVQLKILYIEKCESIKEIVRKEDESD--- 3097

Query: 453  AKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTPV 512
            A +E+I F  L +L+L +L  L  FYSG+  L F  LE   + +C NM  FS G ++ P+
Sbjct: 3098 ASEEMI-FGRLTKLRLESLGRLVRFYSGDGTLQFSCLEEATIAECPNMNTFSEGFVNAPM 3156

Query: 513  LHKVQLNRWD 522
               ++ +R D
Sbjct: 3157 FEGIKTSRED 3166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143659|emb|CBI22412.3| unnamed protein product [Vitis vinifera]

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 137/433 (31%), Positives = 212/433 (48%), Gaps = 58/433 (13%)

Query: 123 NTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNS 182
           N LF+  L+       N+++IW NQ+   +     L  + + +C  L  +F SC +    
Sbjct: 487 NFLFIGSLD-------NVKKIWPNQIPQDS--FSKLEKVVVASCGQLLNIFPSCMLKR-- 535

Query: 183 FVRLQYIRIEKCHVLEELIVVD----NQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGD 238
              LQ++R  +C  LE +  V+    N +     N  +FP++  L + +L +L SF  G 
Sbjct: 536 LQSLQFLRAMECSSLEAVFDVEGTNVNVDCSSLGNTNVFPKITCLDLRNLPQLRSFYPG- 594

Query: 239 VHMLEFPSLKELWISRC----------PEFMVRFKRTTND-----LTKKVFPNLEELIV- 282
            H  ++P L+EL +S C          P F  R      D     L    FPNLEEL + 
Sbjct: 595 AHTSQWPLLEELRVSECYKLDVFAFETPTFQQRHGEGNLDMPLFFLPHVAFPNLEELRLG 654

Query: 283 ---DAEYIITNKFIFSEDLLCKLKCLDV-EFVDELTTILSLDDFLQRFPTLKVLQIEGYS 338
              D E        F  D   +L+ L V ++ D L  I S    LQR   L+VL++   S
Sbjct: 655 DNRDTEIWPEQ---FPVDSFPRLRVLHVHDYRDILVVIPSF--MLQRLHNLEVLKVGSCS 709

Query: 339 D-----WLPKEKVENGMEVIIR-RVFRCYDLKYILK-----QESSI-MNNLVILHVTNCH 386
                  L     EN  + + R R    +DL  + +      E  + + +L  L V NC 
Sbjct: 710 SVKEVFQLEGLDEENQAKRLGRLREIELHDLPGLTRLWKENSEPGLDLQSLESLEVWNCG 769

Query: 387 RLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADD 446
            LINLVPSS SFQNL +L++  C  L+++++ S+AK+LV+L+ +KI    M+ E+V  + 
Sbjct: 770 SLINLVPSSVSFQNLATLDVQSCGSLRSLISPSVAKSLVKLKTLKIGRSDMMEEVVANEG 829

Query: 447 DDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRG 506
            +    A DE I F +L  ++LL L +L SF SG    +FPSLE++LV +C  MK FS  
Sbjct: 830 GE----ATDE-ITFYKLQHMELLYLPNLTSFSSGGYIFSFPSLEQMLVKECPKMKMFSPS 884

Query: 507 ELSTPVLHKVQLN 519
            ++ P L ++++ 
Sbjct: 885 LVTPPRLKRIKVG 897

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143647|emb|CBI22400.3| unnamed protein product [Vitis vinifera]

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 153/512 (29%), Positives = 254/512 (49%), Gaps = 78/512 (15%)

Query: 68  NELVRVGSSQLKFLGIHGCRDALN--PSAESKRQRQE-----------ESANDMQSNELI 114
           N++ +   S+L+ + +  C + LN  PS   KR +             E   D++   + 
Sbjct: 241 NQIPQDSFSKLEVVKVASCGELLNIFPSCVLKRSQSLRLMEVVDCSLLEEVFDVEGTNV- 299

Query: 115 LEDNANISNTLFLEKLEKLELRSI-NIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLF 173
              N N+   + + +L +L LR +  +E+IW N+        QNL  + +  C +L+ LF
Sbjct: 300 ---NVNVKEGVTVTQLSQLILRLLPKVEKIW-NKDPHGILNFQNLKSIFIDKCQSLKNLF 355

Query: 174 SSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTS 233
            +  V +   V+L+ + +  C + EE++  DN+ E       +FP++  L + +L +L S
Sbjct: 356 PASLVKD--LVQLEKLELRSCGI-EEIVAKDNEAETAAK--FVFPKVTSLILVNLHQLRS 410

Query: 234 FCTGDVHMLEFPSLKELWISRC----------PEFMVRFKRTTND---------LTKKVF 274
           F  G  H  ++P LKEL +  C          P F  R    + D         L +   
Sbjct: 411 FYPG-AHTSQWPLLKELIVRACDKVNVFASETPTFQRRHHEGSFDMPSLQPLFLLQQVAL 469

Query: 275 PNLEELIVDAEYIITNKFIFSE----DLLCKLKCLDV-EFVDELTTILSLDDFLQRFPTL 329
           P LEELI++      N  I+ E    D   +L+ L V  ++D L  I S    LQR   L
Sbjct: 470 PYLEELILNDN---GNTEIWQEQFPMDSFPRLRYLKVYGYIDILVVIPSF--MLQRSHNL 524

Query: 330 K------------VLQIEGYSDWLPKEKVENGMEVIIRRVFRCYDLKYILKQES-SIMN- 375
           +            + Q+EG  +    +++    E+ +R +     L ++ K+ S SI++ 
Sbjct: 525 EKLNVRRCSSVKEIFQLEGLDEENQAQRLGRLREIWLRDL---PALTHLWKENSKSILDL 581

Query: 376 -NLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIES 434
            +L  L V NC  LI+LVP S SFQNL +L++  C+ L+++++ S+AK+LV+LR++KI  
Sbjct: 582 QSLESLEVWNCDSLISLVPCSVSFQNLDTLDVWSCSNLRSLISPSVAKSLVKLRKLKIGG 641

Query: 435 CAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLV 494
             M+ E+V  +  +    A DE IAF +L  + LL L +L SF SG    +FPSLE ++V
Sbjct: 642 LHMMEEVVANEGGE----AVDE-IAFYKLQHMVLLCLPNLTSFNSGGYIFSFPSLEHMVV 696

Query: 495 DDCTNMKGFSRGELSTPVLHKVQLNRWDEACW 526
           ++C  MK FS   ++TP L +V++   DE  W
Sbjct: 697 EECPKMKIFSPSLVTTPKLERVEVAD-DEWHW 727

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis]

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 131/424 (30%), Positives = 209/424 (49%), Gaps = 52/424 (12%)

Query: 134  ELRSINIE------RIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQ 187
            +LR + IE       +W      +     NL  L+  NC +L+ LF +      S  +L+
Sbjct: 1134 QLRDLTIENLPSLKHVWSGDPQGVF-SFDNLRSLSAENCPSLKNLFPASIA--KSLSQLE 1190

Query: 188  YIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSL 247
             + I  C  L+E++  D  E   +    +FPQL+ +K++ LE++ +F  G  H+L+ P L
Sbjct: 1191 DLSIVNCG-LQEIVAKDRVEATPR---FVFPQLKSMKLWILEEVKNFYPGR-HILDCPKL 1245

Query: 248  KELWISRCP-------------------EFMVRFKRTTNDLTKKVFPNLEEL-IVDAEYI 287
            ++L I  C                    +  V F++     T+ V  +L+ L + + E +
Sbjct: 1246 EKLTIHDCDNLELFTLESQCLQVGRGENQVDVEFQQPLFSFTQ-VVSHLKSLSLSNKETM 1304

Query: 288  ITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQI--EGYSDWLPKEK 345
            +  +      L  KL+ LD++   + ++    D  LQRF  ++ L +      D  P   
Sbjct: 1305 MIRQAQLPASLFHKLERLDLQCFHDRSSYFPFD-LLQRFQNVETLLLTCSNVEDLFPYPL 1363

Query: 346  VENGMEVIIRRVFR------CYDLKYILKQE---SSIMNNLVILHVTNCHRLINLVPSST 396
            V     V I    R        D++ I  QE   +  + NL  L V  C +LINL PSS 
Sbjct: 1364 VGEDNNVRILSNLRHLTLNSLRDIRRIWNQECQPNQSLQNLETLEVMYCKKLINLAPSSA 1423

Query: 397  SFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDE 456
            +F+NL SLE+  CNGL ++LT + AK+LV+L EMK+ +C M+ EIV A++ D+ ++    
Sbjct: 1424 TFKNLASLEVHECNGLVSLLTSTTAKSLVQLGEMKVSNCKMLREIV-ANEGDEMESE--- 1479

Query: 457  VIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTPVLHKV 516
             I FS+L  L+L +L  L +  S N  + FPSLE L+V  C  M+ FS G ++ P L KV
Sbjct: 1480 -ITFSKLESLRLDDLTRLTTVCSVNCRVKFPSLEELIVTACPRMEFFSHGIITAPKLEKV 1538

Query: 517  QLNR 520
             L +
Sbjct: 1539 SLTK 1542

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488101|ref|XP_002263761.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 132/422 (31%), Positives = 209/422 (49%), Gaps = 48/422 (11%)

Query: 139  NIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLE 198
            N+++IW NQ+   +     L  +T+ +C  L  +F SC +       L+ + ++ C  LE
Sbjct: 1097 NVKKIWHNQIPQDS--FSKLEEVTVSSCGQLLNIFPSCMLKR--VQSLKVLLVDNCSSLE 1152

Query: 199  ELIVVD----NQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISR 254
             +  V+    N +     N  +FP++  L +  L +L SF  G  H+ ++P L++L +  
Sbjct: 1153 AVFDVEGTNVNVDRSSLRNTFVFPKVTSLTLSHLHQLRSFYPG-AHISQWPLLEQLIVWE 1211

Query: 255  C----------PEFMVRFKRTTND-----LTKKVFPNLEELIV----DAEYIITNKFIFS 295
            C          P F  R      D     L    FPNLEEL +    D E I  ++    
Sbjct: 1212 CHKLDVFAFETPTFQQRHGEGNLDMPLFLLPHVAFPNLEELALGQNKDTE-IWPDQLPV- 1269

Query: 296  EDLLCKLKCLDV-EFVDELTTILS-LDDFLQRFPTLKVLQIEGYSDWLPKEKV--ENGME 351
             D   +L+ LDV E  D L  I S +   L     L V++     +    E +  EN  +
Sbjct: 1270 -DCFPRLRVLDVCENRDILVVIPSFMLHILHNLEVLNVVECSSVKEVFQLEGLDEENQAK 1328

Query: 352  VIIR-RVFRCYDLK---YILKQESSI---MNNLVILHVTNCHRLINLVPSSTSFQNLTSL 404
             + R R  R +DL    ++ K+ S     + +L  L   NC  LINLVPS  SFQNL +L
Sbjct: 1329 RLGRLREIRLHDLPALTHLWKENSKSGLDLQSLESLEEWNCDSLINLVPSPVSFQNLATL 1388

Query: 405  EISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELN 464
            ++  C  L+++++ S+AK+LV+L+ +KI    M+ E+V  +  +    A DE I F +L 
Sbjct: 1389 DVHSCGSLRSLISPSVAKSLVKLKTLKIRRSDMMEEVVANEGGE----AIDE-ITFYKLQ 1443

Query: 465  ELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTPVLHKVQLNRWDEA 524
             ++LL L +L SF SG    +FPSLE++LV +C  MK FS   ++TP L ++++   DE 
Sbjct: 1444 HMELLYLPNLTSFSSGGYIFSFPSLEQMLVKECPKMKMFSPSLVTTPRLERIKVGD-DEW 1502

Query: 525  CW 526
             W
Sbjct: 1503 PW 1504

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802546|emb|CAN77665.1| hypothetical protein VITISV_007222 [Vitis vinifera]

 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 156/538 (28%), Positives = 267/538 (49%), Gaps = 73/538 (13%)

Query: 33   LNNKICLKDWLILQLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALN- 91
             N K  L    +L + G+++++           + N+L +   ++LK + +  C   LN 
Sbjct: 869  FNEKAALPSLELLNISGLDNVK---------KIWHNQLPQDSFTKLKDVKVASCGQLLNI 919

Query: 92   -PSAESKRQR--QEESANDMQSNELILE-DNANISNTLFLEKLEKLELRSI-NIERIWRN 146
             PS+  KR +  Q   A D  S E + + +  N+   + + +L KL L+ +  +++IW  
Sbjct: 920  FPSSMLKRLQSLQFLKAVDCSSLEEVFDMEGINVKEAVAVTQLSKLILQFLPKVKQIWNK 979

Query: 147  QVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ 206
            +   +    QNL  + +  C +L+ LF +  V +   V+LQ +++  C +  E+IV  + 
Sbjct: 980  EPHGILT-FQNLKSVMIDQCQSLKNLFPASLVRD--LVQLQELQVWSCGI--EVIVAKDN 1034

Query: 207  EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEF-MVRFKRT 265
              +     V FP++  L++  L +L SF  G  H  ++P LKEL +  CPE  +  F+  
Sbjct: 1035 GVKTAAKFV-FPKVTSLRLSYLRQLRSFFPG-AHTSQWPLLKELKVHECPEVDLFAFETP 1092

Query: 266  TND-----------------LTKKV-FPNLEELIVD---AEYIITNKFIFSEDLLCKLKC 304
            T                   L ++V FPNLEEL +D   A  I   +F  +    C+L+ 
Sbjct: 1093 TFQQIHHMGNLDMLIHQPLFLVQQVAFPNLEELTLDYNNATEIWQEQFPVNS--FCRLRV 1150

Query: 305  LDV-EFVDELTTILSLDDFLQRFPTLK------------VLQIEGYSDWLPKEKVENGME 351
            L+V E+ D L  I S    LQR   L+            + Q+EG+ +    + +    E
Sbjct: 1151 LNVCEYGDILVVIPSF--MLQRLHNLEKLNVKRCSSVKEIFQLEGHDEENQAKMLGRLRE 1208

Query: 352  VIIRRVFRCYDLKYILKQESSI---MNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISY 408
            + +R +     L ++ K+ S     + +L  L V NC  LINL P S SFQNL SL++  
Sbjct: 1209 IWLRDL---PGLIHLWKENSKPGLDLQSLESLEVWNCDSLINLAPCSVSFQNLDSLDVWS 1265

Query: 409  CNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKL 468
            C  L+++++  +AK+LV+L+++KI    M+  +V    +++     DE++ F +L  + L
Sbjct: 1266 CGSLRSLISPLVAKSLVKLKKLKIGGSHMMEVVV----ENEGGEGADEIV-FCKLQHIVL 1320

Query: 469  LNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTPVLHKVQLNRWDEACW 526
            L   +L SF SG    +FPSLE ++V++C  MK FS G ++TP L +V++   DE  W
Sbjct: 1321 LCFPNLTSFSSGGYIFSFPSLEHMVVEECPKMKIFSSGPITTPRLERVEVAD-DEWHW 1377

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522570|ref|XP_003529919.1| PREDICTED: uncharacterized protein LOC100813151 [Glycine max]

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/393 (28%), Positives = 197/393 (50%), Gaps = 33/393 (8%)

Query: 140  IERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEE 199
            +E++W      +    + L  + +++C  LR +F +    +    +L+Y+ +  CH + E
Sbjct: 1151 LEQVWSRDPGGIL-NFKKLQSIHVFSCHRLRNVFPASVAKD--VPKLEYMSVSVCHGIVE 1207

Query: 200  LIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFM 259
            ++  ++  E     +V FP+L  +K+ +L  +  F  G  H +E P LK+L +  C + +
Sbjct: 1208 IVACEDGSETNTEQLV-FPELTDMKLCNLSSIQHFYRGR-HPIECPKLKKLEVRECNKKL 1265

Query: 260  VRF---KRTTND-----LTKKVFPNLEELIVD----AEYIITNKFIFSEDLLCKLKCLDV 307
              F   +R+  +       +K+FPNLE L++D     +++++N        L +L+   V
Sbjct: 1266 KTFGTGERSNEEDEAVMSAEKIFPNLEFLVIDFDEAQKWLLSNTVKHPMHRLKELRLSKV 1325

Query: 308  EFVDELTTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIR-RVFRCY--DLK 364
               + L  IL       R P L+ L +      L KE  E+ + ++++ +    Y  ++K
Sbjct: 1326 NDGERLCQIL------YRMPNLEKLYLSSAKHLL-KESSESRLGIVLQLKELGLYWSEIK 1378

Query: 365  YILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTL 424
             I  +   ++  L +L +  CH+LI L P S S   LT+LE+ YC GL+N++  S AK+L
Sbjct: 1379 DIGFEREPVLQRLELLSLYQCHKLIYLAPPSVSLAYLTNLEVWYCYGLRNLMASSTAKSL 1438

Query: 425  VRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRA- 483
            V+L+ MKI  C  + EIV      D    ++E I F +L  ++L  LK L+ F S  +  
Sbjct: 1439 VQLKSMKIRGCNELEEIV-----SDEGNEEEEQIVFGKLITIELEGLKKLKRFCSYKKCE 1493

Query: 484  LNFPSLERLLVDDCTNMKGFSRGELSTPVLHKV 516
              FPSLE L+V +C  M+ F+ G    P L  +
Sbjct: 1494 FKFPSLEVLIVRECPWMERFTEGGARAPKLQNI 1526

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566878|ref|XP_003551653.1| PREDICTED: uncharacterized protein LOC100819614 [Glycine max]

 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 129/438 (29%), Positives = 207/438 (47%), Gaps = 41/438 (9%)

Query: 117  DNANISNTLFLEKLEKLELRSI-NIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSS 175
            D++       + +L+KL L  + N+E +W N+    T    +L  + ++ C  L  LF  
Sbjct: 1612 DHSEAKTKGIVSRLKKLTLEDLSNLECVW-NKNPRGTLSFPHLQEVVVFKCRTLARLFPL 1670

Query: 176  CTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFC 235
                N    +L+ + I+ C  L E++  ++  E     +  FP L  L +Y L  L+ F 
Sbjct: 1671 SLARN--LGKLKTLEIQICDKLVEIVGKEDVTEHGTTEMFEFPCLWKLILYKLSLLSCFY 1728

Query: 236  TGDVHMLEFPSLKELWISRCPE---FMVRFKRTTNDLT----------------KKVFPN 276
             G  H LE P L+ L +S CP+   F   F  +                     +K+ PN
Sbjct: 1729 PGK-HHLECPLLERLDVSYCPKLKLFTSEFGDSPKQAVIEAPISQLQQQPLFSIEKIVPN 1787

Query: 277  LEELIVDAEYI-ITNKFIFSEDLLCKLKCLDVEFVDELTTILSLD-DFLQRFPTLKVLQI 334
            LEEL ++ E I + +     +D L KL  LD+ F ++     +L  DFLQ+ P+L  L++
Sbjct: 1788 LEELTLNEEDIMLLSDAHLPQDFLFKLTDLDLSFENDDNKKETLPFDFLQKVPSLDYLRV 1847

Query: 335  E---GYSDWLPKEKVE-NGMEVIIRRVFRCYDLKYI----LKQE--SSIMNNLVILHVTN 384
            E   G  +  P +K + +   +   +  R YDL  +    L+          L +L +  
Sbjct: 1848 ERCYGLKEIFPSQKFQVHDRSLPGLKQLRLYDLGELESIGLEHPWVKPYSQKLQLLKLWG 1907

Query: 385  CHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLA 444
            C +L  LV  + SF NL  LE++ CN ++ +L  S AK+L++L  + I  C  + EIV  
Sbjct: 1908 CPQLEELVSCAVSFINLKELEVTNCNRMEYLLKCSTAKSLLQLESLSISECESMKEIVKK 1967

Query: 445  DDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFS 504
            +++D    A DE I F  L  + L +L  L  FYSGN  L+F  LE   + +C NMK FS
Sbjct: 1968 EEED----ASDE-ITFGSLRRIMLDSLPRLVRFYSGNATLHFKCLEEATIAECQNMKTFS 2022

Query: 505  RGELSTPVLHKVQLNRWD 522
             G +  P+L  ++ +  D
Sbjct: 2023 EGIIDAPLLEGIKTSTED 2040

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	526
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.188	0.069	0.314	0.00071

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 0.00071, Sum P(2) = 0.00071
 Identities = 33/105 (31%), Positives = 54/105 (51%)

Query:   158 LTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMF 217
             +T +TL +C NL C+ S   V       L+Y+ IEK ++L++ + +D    E  +  V F
Sbjct:   786 ITSVTLSSC-NL-CI-SLPPVGQ--LPSLKYLSIEKFNILQK-VGLDFFFGENNSRGVPF 839

Query:   218 PQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRF 262
               LQ LK Y + +   +   ++    FP L++L I RCP    +F
Sbjct:   840 QSLQILKFYGMPRWDEWICPELEDGIFPCLQKLIIQRCPSLRKKF 884

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.08360002 cc-nbs-lrr resistance protein (1338 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	526
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.94
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.94
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.87
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.79
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.78
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.77
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.72
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.62
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.6
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.45
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.38
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.36
KOG4341	483	consensus F-box protein containing LRR [General fu	99.27
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.24
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.21
KOG4341	483	consensus F-box protein containing LRR [General fu	99.11
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.1
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.01
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.98
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.89
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.82
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.8
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.63
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.6
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.55
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.26
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.22
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.15
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.12
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.08
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.9
PRK15386	426	type III secretion protein GogB; Provisional	97.83
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.82
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.79
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.77
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.68
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.66
PRK15386	426	type III secretion protein GogB; Provisional	97.56
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.52
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.47
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.41
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.31
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.31
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.24
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.0
PLN03150	623	hypothetical protein; Provisional	96.92
PLN03150	623	hypothetical protein; Provisional	96.76
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.74
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.6
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.43
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.21
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.14
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.98
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	95.6
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.58
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	95.48
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.13
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.09
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	94.92
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.15
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.63
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.52
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.04
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.58
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	92.28
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	90.07
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.21
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	86.42
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	84.17
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	81.88

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.94  E-value=1.3e-26  Score=261.15  Aligned_cols=452  Identities=15%  Similarity=0.085  Sum_probs=208.1

Q ss_pred             cccccCCc--eeeeEEEEecceeehhHHHHHhccccccceeccccccccc-ccccccccccCCcccEEEEecCCCCCC-c
Q 039042           17 WYWESTNI--WRREFRLRLNNKICLKDWLILQLQGIEDLELHELQEQDVN-YFANELVRVGSSQLKFLGIHGCRDALN-P   92 (526)
Q Consensus        17 ~~~~~~~~--~~~~~~l~l~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~-~~~~~~~~~~l~~L~~L~L~~c~~~~~-p   92 (526)
                      +.|.|..+  .+++..+++..... ...+...+..+++|+.++++++.+. .+|..+ ...+++|++|++++|..... |
T Consensus        58 c~w~gv~c~~~~~v~~L~L~~~~i-~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~-~~~l~~L~~L~Ls~n~l~~~~p  135 (968)
T PLN00113         58 CLWQGITCNNSSRVVSIDLSGKNI-SGKISSAIFRLPYIQTINLSNNQLSGPIPDDI-FTTSSSLRYLNLSNNNFTGSIP  135 (968)
T ss_pred             CcCcceecCCCCcEEEEEecCCCc-cccCChHHhCCCCCCEEECCCCccCCcCChHH-hccCCCCCEEECcCCccccccC
Confidence            56765332  34566677654311 1122345677888888888877654 355431 22567777777777765544 4


Q ss_pred             hhhhhhccCccc--ccccccchhhhcccccccchhhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCce
Q 039042           93 SAESKRQRQEES--ANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLR  170 (526)
Q Consensus        93 ~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~  170 (526)
                      .   +.+++|++  +.++.....++.      .++.+++|++|++++|.+....   |.. ++++++|++|++++|....
T Consensus       136 ~---~~l~~L~~L~Ls~n~~~~~~p~------~~~~l~~L~~L~L~~n~l~~~~---p~~-~~~l~~L~~L~L~~n~l~~  202 (968)
T PLN00113        136 R---GSIPNLETLDLSNNMLSGEIPN------DIGSFSSLKVLDLGGNVLVGKI---PNS-LTNLTSLEFLTLASNQLVG  202 (968)
T ss_pred             c---cccCCCCEEECcCCcccccCCh------HHhcCCCCCEEECccCcccccC---Chh-hhhCcCCCeeeccCCCCcC
Confidence            3   24555555  444332222221      1222555555555555433210   222 3345555555555543222


Q ss_pred             ecCCcccccccccccccEEeeeccccccEEEeecch-------------h-hhcccccccccccceeecccCcccccccc
Q 039042          171 CLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ-------------E-EERKNNIVMFPQLQYLKMYDLEKLTSFCT  236 (526)
Q Consensus       171 ~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~-------------~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  236 (526)
                      . .|..+.   .+++|++|++++|.....+|..+..             . ...+..++.+++|++|+++++.-...+|.
T Consensus       203 ~-~p~~l~---~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  278 (968)
T PLN00113        203 Q-IPRELG---QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP  278 (968)
T ss_pred             c-CChHHc---CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch
Confidence            2 233332   4455555555544322222222100             0 00000013444455555444322222222


Q ss_pred             CcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceecc--ccccccccEEEeeeCCccc
Q 039042          237 GDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFS--EDLLCKLKCLDVEFVDELT  314 (526)
Q Consensus       237 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~  314 (526)
                      .   +..+++|++|++++|.....+|..+      ..+++|+.|++++|.+..   ..|  ...+++|+.|++++|....
T Consensus       279 ~---l~~l~~L~~L~Ls~n~l~~~~p~~~------~~l~~L~~L~l~~n~~~~---~~~~~~~~l~~L~~L~L~~n~l~~  346 (968)
T PLN00113        279 S---IFSLQKLISLDLSDNSLSGEIPELV------IQLQNLEILHLFSNNFTG---KIPVALTSLPRLQVLQLWSNKFSG  346 (968)
T ss_pred             h---HhhccCcCEEECcCCeeccCCChhH------cCCCCCcEEECCCCccCC---cCChhHhcCCCCCEEECcCCCCcC
Confidence            2   3344555555555442111222111      234555555555443321   111  1234555556655554332


Q ss_pred             ccccchhHhhcCCCccEEEEe-ec-cccccCCCc---------------------CccccccceEEEec-cCceeecccc
Q 039042          315 TILSLDDFLQRFPTLKVLQIE-GY-SDWLPKEKV---------------------ENGMEVIIRRVFRC-YDLKYILKQE  370 (526)
Q Consensus       315 ~~~~~~~~l~~l~~L~~L~l~-~~-~~~~~~~~~---------------------~~~~~~~L~~L~l~-~~l~~~~~~~  370 (526)
                        .+|. .+..+++|+.|+++ +. .+..|....                     ....+++|+.|++. +.+....+..
T Consensus       347 --~~p~-~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~  423 (968)
T PLN00113        347 --EIPK-NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE  423 (968)
T ss_pred             --cCCh-HHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChh
Confidence              2332 34455556665555 22 111111000                     00223344444444 3333333333


Q ss_pred             ccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcc
Q 039042          371 SSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDH  450 (526)
Q Consensus       371 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~  450 (526)
                      +..++.|+.|++++|.....++.....+++|+.|++++|.-...++.  . ...++|+.|++++|.....++.       
T Consensus       424 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~--~-~~~~~L~~L~ls~n~l~~~~~~-------  493 (968)
T PLN00113        424 FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD--S-FGSKRLENLDLSRNQFSGAVPR-------  493 (968)
T ss_pred             HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc--c-cccccceEEECcCCccCCccCh-------
Confidence            44444444444444433333332333444455555554432222221  1 1224555555555432222222       


Q ss_pred             cccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCccccCCCCCCCcccceEEec
Q 039042          451 DAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTPVLHKVQLN  519 (526)
Q Consensus       451 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~~L~~l~l~  519 (526)
                           .+..+++|+.|++++|.....+|..  +..+++|+.|++++|.-....|.....+++|+.++++
T Consensus       494 -----~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  555 (968)
T PLN00113        494 -----KLGSLSELMQLKLSENKLSGEIPDE--LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS  555 (968)
T ss_pred             -----hhhhhhccCEEECcCCcceeeCChH--HcCccCCCEEECCCCcccccCChhHhCcccCCEEECC
Confidence                 2335678888888886544556654  5678899999999876555666666678899999887

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.94  E-value=1.7e-26  Score=260.31  Aligned_cols=419  Identities=16%  Similarity=0.063  Sum_probs=222.7

Q ss_pred             ccccceeccccccccc-ccccccccccCCcccEEEEecCCCCCC-chhhhhhccCccc--ccccccchhhhcccccccch
Q 039042           49 GIEDLELHELQEQDVN-YFANELVRVGSSQLKFLGIHGCRDALN-PSAESKRQRQEES--ANDMQSNELILEDNANISNT  124 (526)
Q Consensus        49 ~~~~L~~l~l~~~~~~-~~~~~~~~~~l~~L~~L~L~~c~~~~~-p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~  124 (526)
                      .+.+|+.++++.+.+. ..|.  ..+.+++|++|++++|..... |. .++++++|++  +.+|.....++..      +
T Consensus       138 ~l~~L~~L~Ls~n~~~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~------l  208 (968)
T PLN00113        138 SIPNLETLDLSNNMLSGEIPN--DIGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQLVGQIPRE------L  208 (968)
T ss_pred             ccCCCCEEECcCCcccccCCh--HHhcCCCCCEEECccCcccccCCh-hhhhCcCCCeeeccCCCCcCcCChH------H
Confidence            3556666666665543 2333  234567777777777765544 33 3566777776  5555433222221      1


Q ss_pred             hhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeec
Q 039042          125 LFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVD  204 (526)
Q Consensus       125 ~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~  204 (526)
                      +.+++|+.|++++|.+...   .|.+ +..+++|++|++++|..... .|..+.   .+++|++|++++|.....+|..+
T Consensus       209 ~~l~~L~~L~L~~n~l~~~---~p~~-l~~l~~L~~L~L~~n~l~~~-~p~~l~---~l~~L~~L~L~~n~l~~~~p~~l  280 (968)
T PLN00113        209 GQMKSLKWIYLGYNNLSGE---IPYE-IGGLTSLNHLDLVYNNLTGP-IPSSLG---NLKNLQYLFLYQNKLSGPIPPSI  280 (968)
T ss_pred             cCcCCccEEECcCCccCCc---CChh-HhcCCCCCEEECcCceeccc-cChhHh---CCCCCCEEECcCCeeeccCchhH
Confidence            2245555555555544321   0222 33455555555555432222 233333   44555555555442222222111


Q ss_pred             ch-------------hh-hcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCcc
Q 039042          205 NQ-------------EE-ERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLT  270 (526)
Q Consensus       205 ~~-------------~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  270 (526)
                      ..             .. ..+..+..+++|++|+++++......+..   +..+++|+.|++++|.--..+|..+     
T Consensus       281 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~l~~L~~L~L~~n~l~~~~p~~l-----  352 (968)
T PLN00113        281 FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA---LTSLPRLQVLQLWSNKFSGEIPKNL-----  352 (968)
T ss_pred             hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh---HhcCCCCCEEECcCCCCcCcCChHH-----
Confidence            00             00 00000134555555555554322233322   4456666666666653222233222     


Q ss_pred             ccccCCcceEEEeeccccccceecccc--ccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-ec-cccccCCCc
Q 039042          271 KKVFPNLEELIVDAEYIITNKFIFSED--LLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GY-SDWLPKEKV  346 (526)
Q Consensus       271 ~~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~-~~~~~~~~~  346 (526)
                       ..+++|+.|++++|.+..   .+|..  .+++|+.|++++|....  .+|. .+..+++|+.|.+. |. .+..|.. +
T Consensus       353 -~~~~~L~~L~Ls~n~l~~---~~p~~~~~~~~L~~L~l~~n~l~~--~~p~-~~~~~~~L~~L~L~~n~l~~~~p~~-~  424 (968)
T PLN00113        353 -GKHNNLTVLDLSTNNLTG---EIPEGLCSSGNLFKLILFSNSLEG--EIPK-SLGACRSLRRVRLQDNSFSGELPSE-F  424 (968)
T ss_pred             -hCCCCCcEEECCCCeeEe---eCChhHhCcCCCCEEECcCCEecc--cCCH-HHhCCCCCCEEECcCCEeeeECChh-H
Confidence             245666666666554431   12221  33566666666655433  3333 45667788888877 33 3233322 1


Q ss_pred             CccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcc
Q 039042          347 ENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLV  425 (526)
Q Consensus       347 ~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~  425 (526)
                        ..+++|+.|+++ +.+....+..+..+++|+.|++++|.....+|.. ...++|+.|++++|.-....+  ..+..++
T Consensus       425 --~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~~~L~~L~ls~n~l~~~~~--~~~~~l~  499 (968)
T PLN00113        425 --TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVP--RKLGSLS  499 (968)
T ss_pred             --hcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc-cccccceEEECcCCccCCccC--hhhhhhh
Confidence              456788888888 7777666666667788888888887665555443 345678888887763222333  3455677


Q ss_pred             cccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCccccCC
Q 039042          426 RLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSR  505 (526)
Q Consensus       426 ~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~  505 (526)
                      +|+.|++++|.....+|..            +..+++|++|++++|.....+|..  +..+++|+.|++++|.-...+|.
T Consensus       500 ~L~~L~Ls~N~l~~~~p~~------------~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p~  565 (968)
T PLN00113        500 ELMQLKLSENKLSGEIPDE------------LSSCKKLVSLDLSHNQLSGQIPAS--FSEMPVLSQLDLSQNQLSGEIPK  565 (968)
T ss_pred             ccCEEECcCCcceeeCChH------------HcCccCCCEEECCCCcccccCChh--HhCcccCCEEECCCCcccccCCh
Confidence            7888888776544444443            224677777777775444444443  55667777777777665556666


Q ss_pred             CCCCCcccceEEec
Q 039042          506 GELSTPVLHKVQLN  519 (526)
Q Consensus       506 ~~~~~~~L~~l~l~  519 (526)
                      ....+++|++++++
T Consensus       566 ~l~~l~~L~~l~ls  579 (968)
T PLN00113        566 NLGNVESLVQVNIS  579 (968)
T ss_pred             hHhcCcccCEEecc
Confidence            66666777777766

>PLN03210 Resistant to P

Probab=99.90  E-value=2.8e-23  Score=234.78  Aligned_cols=298  Identities=21%  Similarity=0.291  Sum_probs=189.1

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      +.+|+.|++.++.+..+|.+     +..+++|+.|++++|..++.+ |.    ++.+++|++|++.+|..+..+|..+  
T Consensus       610 ~~~L~~L~L~~s~l~~L~~~-----~~~l~~Lk~L~Ls~~~~l~~i-p~----ls~l~~Le~L~L~~c~~L~~lp~si--  677 (1153)
T PLN03210        610 PENLVKLQMQGSKLEKLWDG-----VHSLTGLRNIDLRGSKNLKEI-PD----LSMATNLETLKLSDCSSLVELPSSI--  677 (1153)
T ss_pred             ccCCcEEECcCccccccccc-----cccCCCCCEEECCCCCCcCcC-Cc----cccCCcccEEEecCCCCccccchhh--
Confidence            67888899999888887764     347889999999988777765 53    3378899999999988888777654  


Q ss_pred             hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY  286 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  286 (526)
                              +.+++|++|++++|..++.+|..   + ++++|+.|.+++|..+..+|         ...++|+.|+++++.
T Consensus       678 --------~~L~~L~~L~L~~c~~L~~Lp~~---i-~l~sL~~L~Lsgc~~L~~~p---------~~~~nL~~L~L~~n~  736 (1153)
T PLN03210        678 --------QYLNKLEDLDMSRCENLEILPTG---I-NLKSLYRLNLSGCSRLKSFP---------DISTNISWLDLDETA  736 (1153)
T ss_pred             --------hccCCCCEEeCCCCCCcCccCCc---C-CCCCCCEEeCCCCCCccccc---------cccCCcCeeecCCCc
Confidence                    67889999999998888888766   3 68899999999997776655         235678888888664


Q ss_pred             ccccceecccc-ccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeeccccccCCCcCccccccceEEEec--cCc
Q 039042          287 IITNKFIFSED-LLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVFRC--YDL  363 (526)
Q Consensus       287 ~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~--~~l  363 (526)
                      +    ..+|.. .+++|++|.+.++....   +.. .+..++                 ......+++|+.|++.  +.+
T Consensus       737 i----~~lP~~~~l~~L~~L~l~~~~~~~---l~~-~~~~l~-----------------~~~~~~~~sL~~L~Ls~n~~l  791 (1153)
T PLN03210        737 I----EEFPSNLRLENLDELILCEMKSEK---LWE-RVQPLT-----------------PLMTMLSPSLTRLFLSDIPSL  791 (1153)
T ss_pred             c----ccccccccccccccccccccchhh---ccc-cccccc-----------------hhhhhccccchheeCCCCCCc
Confidence            4    334432 45667777666543211   000 000000                 0000123455555555  223


Q ss_pred             eeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecc
Q 039042          364 KYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVL  443 (526)
Q Consensus       364 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~  443 (526)
                      ..+ +..++.+++|+.|++++|..+..+|... .+++|+.|++++|.++..++.     ..++|+.|++++ +.++++|.
T Consensus       792 ~~l-P~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~-----~~~nL~~L~Ls~-n~i~~iP~  863 (1153)
T PLN03210        792 VEL-PSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD-----ISTNISDLNLSR-TGIEEVPW  863 (1153)
T ss_pred             ccc-ChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc-----cccccCEeECCC-CCCccChH
Confidence            333 3345566666777776666666665443 566666777766666655442     125666666665 34555554


Q ss_pred             cccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCccccC
Q 039042          444 ADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFS  504 (526)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~  504 (526)
                      .            +..+++|+.|++.+|++++.++..  ...+++|+.+++++|.+++.++
T Consensus       864 s------------i~~l~~L~~L~L~~C~~L~~l~~~--~~~L~~L~~L~l~~C~~L~~~~  910 (1153)
T PLN03210        864 W------------IEKFSNLSFLDMNGCNNLQRVSLN--ISKLKHLETVDFSDCGALTEAS  910 (1153)
T ss_pred             H------------HhcCCCCCEEECCCCCCcCccCcc--cccccCCCeeecCCCccccccc
Confidence            3            224566666666666666666654  3456666666666666665443

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.87  E-value=1.5e-21  Score=220.85  Aligned_cols=333  Identities=17%  Similarity=0.173  Sum_probs=235.8

Q ss_pred             hhhhhhhhcccccccc---cccccccccccccC-CcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEE
Q 039042          126 FLEKLEKLELRSINIE---RIWRNQVAAMTCGI-QNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELI  201 (526)
Q Consensus       126 ~l~~L~~L~L~~~~l~---~~~~~~~~~~~~~l-~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~  201 (526)
                      .+++|+.|.+..+...   ..-...|.+ +..+ .+|+.|.+.+++ ++.+ |..+    ...+|++|++.++ .++.++
T Consensus       556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~-~~~lp~~Lr~L~~~~~~-l~~l-P~~f----~~~~L~~L~L~~s-~l~~L~  627 (1153)
T PLN03210        556 GMRNLLFLKFYTKKWDQKKEVRWHLPEG-FDYLPPKLRLLRWDKYP-LRCM-PSNF----RPENLVKLQMQGS-KLEKLW  627 (1153)
T ss_pred             cCccccEEEEecccccccccceeecCcc-hhhcCcccEEEEecCCC-CCCC-CCcC----CccCCcEEECcCc-cccccc
Confidence            4667777777554211   111111222 2233 458888887764 3443 5543    3577888888887 566666


Q ss_pred             eecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEE
Q 039042          202 VVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELI  281 (526)
Q Consensus       202 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~  281 (526)
                      ...          ..+++|++|+++++..++.+|.    +..+++|++|++++|..+..+|..+      ..+++|+.|+
T Consensus       628 ~~~----------~~l~~Lk~L~Ls~~~~l~~ip~----ls~l~~Le~L~L~~c~~L~~lp~si------~~L~~L~~L~  687 (1153)
T PLN03210        628 DGV----------HSLTGLRNIDLRGSKNLKEIPD----LSMATNLETLKLSDCSSLVELPSSI------QYLNKLEDLD  687 (1153)
T ss_pred             ccc----------ccCCCCCEEECCCCCCcCcCCc----cccCCcccEEEecCCCCccccchhh------hccCCCCEEe
Confidence            543          5678888888887777777653    4467888888888888887777665      4678888888


Q ss_pred             Eeeccccccceecccc-ccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEe
Q 039042          282 VDAEYIITNKFIFSED-LLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFR  359 (526)
Q Consensus       282 l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l  359 (526)
                      +++|..   +..+|.. .+++|+.|++++|..+.  .+|.    ..++|+.|++.++ ...+|..    ..+++|++|.+
T Consensus       688 L~~c~~---L~~Lp~~i~l~sL~~L~Lsgc~~L~--~~p~----~~~nL~~L~L~~n~i~~lP~~----~~l~~L~~L~l  754 (1153)
T PLN03210        688 MSRCEN---LEILPTGINLKSLYRLNLSGCSRLK--SFPD----ISTNISWLDLDETAIEEFPSN----LRLENLDELIL  754 (1153)
T ss_pred             CCCCCC---cCccCCcCCCCCCCEEeCCCCCCcc--cccc----ccCCcCeeecCCCcccccccc----ccccccccccc
Confidence            886532   2445543 56788888888887776  4443    2467888888744 4444432    23567777777


Q ss_pred             c-cCcee-------eccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEE
Q 039042          360 C-YDLKY-------ILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMK  431 (526)
Q Consensus       360 ~-~~l~~-------~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~  431 (526)
                      . .....       +.+.....+++|+.|++++|..+..+|..+..+++|+.|+|++|.+++.+|..  . .+++|+.|+
T Consensus       755 ~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~--~-~L~sL~~L~  831 (1153)
T PLN03210        755 CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG--I-NLESLESLD  831 (1153)
T ss_pred             cccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC--C-CccccCEEE
Confidence            6 11111       11122233579999999999999999988899999999999999999988743  2 689999999


Q ss_pred             EccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCccccCCCCCCCc
Q 039042          432 IESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTP  511 (526)
Q Consensus       432 i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~  511 (526)
                      +++|..+..++.               ..++|+.|++++ +.++.+|..  +..+++|+.|++++|++++.+|.....++
T Consensus       832 Ls~c~~L~~~p~---------------~~~nL~~L~Ls~-n~i~~iP~s--i~~l~~L~~L~L~~C~~L~~l~~~~~~L~  893 (1153)
T PLN03210        832 LSGCSRLRTFPD---------------ISTNISDLNLSR-TGIEEVPWW--IEKFSNLSFLDMNGCNNLQRVSLNISKLK  893 (1153)
T ss_pred             CCCCCccccccc---------------cccccCEeECCC-CCCccChHH--HhcCCCCCEEECCCCCCcCccCccccccc
Confidence            999998877654               247899999987 578888875  67899999999999999999998877788


Q ss_pred             ccceEEecc
Q 039042          512 VLHKVQLNR  520 (526)
Q Consensus       512 ~L~~l~l~~  520 (526)
                      +|+.++++.
T Consensus       894 ~L~~L~l~~  902 (1153)
T PLN03210        894 HLETVDFSD  902 (1153)
T ss_pred             CCCeeecCC
Confidence            898888773

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.87  E-value=5.9e-23  Score=200.12  Aligned_cols=344  Identities=17%  Similarity=0.160  Sum_probs=250.9

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      +++|+.+++.+|.++.+    |.. .....+|+.|+|.++ .++.+-...   ++.++.||.|+|+.| .+.+++...+ 
T Consensus       101 l~nLq~v~l~~N~Lt~I----P~f-~~~sghl~~L~L~~N-~I~sv~se~---L~~l~alrslDLSrN-~is~i~~~sf-  169 (873)
T KOG4194|consen  101 LPNLQEVNLNKNELTRI----PRF-GHESGHLEKLDLRHN-LISSVTSEE---LSALPALRSLDLSRN-LISEIPKPSF-  169 (873)
T ss_pred             CCcceeeeeccchhhhc----ccc-cccccceeEEeeecc-ccccccHHH---HHhHhhhhhhhhhhc-hhhcccCCCC-
Confidence            67778888888877766    322 335677899999885 444442333   337888999999998 7777765321 


Q ss_pred             hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY  286 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  286 (526)
                              ..-.++++|++++ +.++.+-.+  ++.++.+|..|.++++ .++.+|...+     +++++|+.|++..|.
T Consensus       170 --------p~~~ni~~L~La~-N~It~l~~~--~F~~lnsL~tlkLsrN-rittLp~r~F-----k~L~~L~~LdLnrN~  232 (873)
T KOG4194|consen  170 --------PAKVNIKKLNLAS-NRITTLETG--HFDSLNSLLTLKLSRN-RITTLPQRSF-----KRLPKLESLDLNRNR  232 (873)
T ss_pred             --------CCCCCceEEeecc-ccccccccc--cccccchheeeecccC-cccccCHHHh-----hhcchhhhhhccccc
Confidence                    2335699999987 466666444  3667888999999988 7888887654     379999999998776


Q ss_pred             ccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cCce
Q 039042          287 IITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLK  364 (526)
Q Consensus       287 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~  364 (526)
                      +. -++.+.+..+++|+.|.+.++.--.   +..+.+-.+.++++|++. +....+..+++  .++.+|+.|+++ +.++
T Consensus       233 ir-ive~ltFqgL~Sl~nlklqrN~I~k---L~DG~Fy~l~kme~l~L~~N~l~~vn~g~l--fgLt~L~~L~lS~NaI~  306 (873)
T KOG4194|consen  233 IR-IVEGLTFQGLPSLQNLKLQRNDISK---LDDGAFYGLEKMEHLNLETNRLQAVNEGWL--FGLTSLEQLDLSYNAIQ  306 (873)
T ss_pred             ee-eehhhhhcCchhhhhhhhhhcCccc---ccCcceeeecccceeecccchhhhhhcccc--cccchhhhhccchhhhh
Confidence            62 2334556678899999998865433   556677789999999998 43444444544  678899999999 9999


Q ss_pred             eeccccccccCcccEEEEeccCCcccccC-CCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecc
Q 039042          365 YILKQESSIMNNLVILHVTNCHRLINLVP-SSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVL  443 (526)
Q Consensus       365 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~  443 (526)
                      .+...+.+..++|+.|+++++ .+..+++ .+..+..|+.|.+++. ++..+... .+..+++|++|++++ +.+...++
T Consensus       307 rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~-af~~lssL~~LdLr~-N~ls~~IE  382 (873)
T KOG4194|consen  307 RIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHN-SIDHLAEG-AFVGLSSLHKLDLRS-NELSWCIE  382 (873)
T ss_pred             eeecchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhccccc-chHHHHhh-HHHHhhhhhhhcCcC-CeEEEEEe
Confidence            999888888999999999986 4555544 4456788999999875 67766533 455679999999988 44555554


Q ss_pred             cccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCccccCCCCCCCcccceEEec
Q 039042          444 ADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTPVLHKVQLN  519 (526)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~~L~~l~l~  519 (526)
                      ...        ..+..+++|+.|++.+ +++++++... +..+++|++|++.+ ..+.++.........|++|.++
T Consensus       383 Daa--------~~f~gl~~LrkL~l~g-Nqlk~I~krA-fsgl~~LE~LdL~~-NaiaSIq~nAFe~m~Lk~Lv~n  447 (873)
T KOG4194|consen  383 DAA--------VAFNGLPSLRKLRLTG-NQLKSIPKRA-FSGLEALEHLDLGD-NAIASIQPNAFEPMELKELVMN  447 (873)
T ss_pred             cch--------hhhccchhhhheeecC-ceeeecchhh-hccCcccceecCCC-Ccceeecccccccchhhhhhhc
Confidence            322        3445689999999998 6899999986 77899999999988 4577776655433478887776

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.79  E-value=1.1e-21  Score=192.70  Aligned_cols=132  Identities=17%  Similarity=0.117  Sum_probs=60.7

Q ss_pred             cccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccE
Q 039042          351 EVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLRE  429 (526)
Q Consensus       351 ~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~  429 (526)
                      +++|+.|+++ +.++.+. -......+|++|+++.+ .+..+|..+..++.|+.|...+. ++.--..++.++.+.+|++
T Consensus       244 l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Lev  320 (1255)
T KOG0444|consen  244 LRNLRRLNLSGNKITELN-MTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEV  320 (1255)
T ss_pred             hhhhheeccCcCceeeee-ccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHH
Confidence            3445555555 4444442 12222345555555543 34444444445555555544332 3332222244555555555


Q ss_pred             EEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCcc
Q 039042          430 MKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMK  501 (526)
Q Consensus       430 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~  501 (526)
                      +...+ +.++-+|+.            +..+++|+.|.+. |+.+-.+|..  ++-++.|+.|++...|++.
T Consensus       321 f~aan-N~LElVPEg------------lcRC~kL~kL~L~-~NrLiTLPea--IHlL~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  321 FHAAN-NKLELVPEG------------LCRCVKLQKLKLD-HNRLITLPEA--IHLLPDLKVLDLRENPNLV  376 (1255)
T ss_pred             HHhhc-cccccCchh------------hhhhHHHHHhccc-ccceeechhh--hhhcCCcceeeccCCcCcc
Confidence            55544 334444433            2244555555553 3445455544  4445555555555555543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.78  E-value=6.1e-20  Score=179.28  Aligned_cols=329  Identities=15%  Similarity=0.102  Sum_probs=180.8

Q ss_pred             HHHHHhccccccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc-ccccccchhhhcccc
Q 039042           41 DWLILQLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES-ANDMQSNELILEDNA  119 (526)
Q Consensus        41 ~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~-i~~~~~l~~~~~~~~  119 (526)
                      ++.+..+..+.+|+...+..+....+|.  ......+|+.|+|..+.......+.++-++.|+. -...+.+.+++....
T Consensus        92 ~id~~~f~nl~nLq~v~l~~N~Lt~IP~--f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sf  169 (873)
T KOG4194|consen   92 HIDFEFFYNLPNLQEVNLNKNELTRIPR--FGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSF  169 (873)
T ss_pred             cCcHHHHhcCCcceeeeeccchhhhccc--ccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCC
Confidence            3455667778888888888777777775  2334566888888887766665545666666666 223334444443211


Q ss_pred             cccchhhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccE
Q 039042          120 NISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEE  199 (526)
Q Consensus       120 ~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~  199 (526)
                           ..-.++++|+|++|.|+.+-.+.+    ..+.+|.+|.|+++ +++.+ |....+  .|++|+.|+|..| .++.
T Consensus       170 -----p~~~ni~~L~La~N~It~l~~~~F----~~lnsL~tlkLsrN-rittL-p~r~Fk--~L~~L~~LdLnrN-~iri  235 (873)
T KOG4194|consen  170 -----PAKVNIKKLNLASNRITTLETGHF----DSLNSLLTLKLSRN-RITTL-PQRSFK--RLPKLESLDLNRN-RIRI  235 (873)
T ss_pred             -----CCCCCceEEeeccccccccccccc----cccchheeeecccC-ccccc-CHHHhh--hcchhhhhhcccc-ceee
Confidence                 113567777777777776644443    34667777777775 44444 333332  6777777777776 4544


Q ss_pred             E-EeecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcc
Q 039042          200 L-IVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLE  278 (526)
Q Consensus       200 l-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~  278 (526)
                      + ...|          .++++|+.|.+.+ +++..+..+.  +..+..+++|+++.+ ++..+....+     ..+++|+
T Consensus       236 ve~ltF----------qgL~Sl~nlklqr-N~I~kL~DG~--Fy~l~kme~l~L~~N-~l~~vn~g~l-----fgLt~L~  296 (873)
T KOG4194|consen  236 VEGLTF----------QGLPSLQNLKLQR-NDISKLDDGA--FYGLEKMEHLNLETN-RLQAVNEGWL-----FGLTSLE  296 (873)
T ss_pred             ehhhhh----------cCchhhhhhhhhh-cCcccccCcc--eeeecccceeecccc-hhhhhhcccc-----cccchhh
Confidence            4 2333          4677777777766 3444444332  556777777777766 4544443321     3567777


Q ss_pred             eEEEeeccccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeeccccccCCCcCccccccceEEE
Q 039042          279 ELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVF  358 (526)
Q Consensus       279 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  358 (526)
                      +|+++.|.+.. +..-.=..+++|++|+++++. ++  .++...+..+..|+.|.++.                      
T Consensus       297 ~L~lS~NaI~r-ih~d~WsftqkL~~LdLs~N~-i~--~l~~~sf~~L~~Le~LnLs~----------------------  350 (873)
T KOG4194|consen  297 QLDLSYNAIQR-IHIDSWSFTQKLKELDLSSNR-IT--RLDEGSFRVLSQLEELNLSH----------------------  350 (873)
T ss_pred             hhccchhhhhe-eecchhhhcccceeEeccccc-cc--cCChhHHHHHHHhhhhcccc----------------------
Confidence            77777665421 110011145566777666644 33  35555555555555555552                      


Q ss_pred             eccCceeeccccccccCcccEEEEeccCCc---ccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEcc
Q 039042          359 RCYDLKYILKQESSIMNNLVILHVTNCHRL---INLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIES  434 (526)
Q Consensus       359 l~~~l~~~~~~~~~~l~~L~~L~l~~c~~l---~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~  434 (526)
                        +.+..+.+..|..+.+|++|+++.+..-   .+....+..+++|+.|++.+. +++.++.. .+..++.|++|++.+
T Consensus       351 --Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~kr-Afsgl~~LE~LdL~~  425 (873)
T KOG4194|consen  351 --NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKR-AFSGLEALEHLDLGD  425 (873)
T ss_pred             --cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchh-hhccCcccceecCCC
Confidence              4444444444444445555555443211   111122334555555555543 45544422 334455555555554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.77  E-value=6.2e-22  Score=185.04  Aligned_cols=396  Identities=16%  Similarity=0.116  Sum_probs=227.7

Q ss_pred             ccccccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc-ccccccchhhhcccccccchh
Q 039042           47 LQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES-ANDMQSNELILEDNANISNTL  125 (526)
Q Consensus        47 l~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~-i~~~~~l~~~~~~~~~~~~~~  125 (526)
                      ++.++.+.-++.+.++...+|.  ..++..+|+.|+.+.+.....|.+ ++++..|+. ....+++..+++.      ..
T Consensus        87 ig~l~~l~~l~vs~n~ls~lp~--~i~s~~~l~~l~~s~n~~~el~~~-i~~~~~l~dl~~~~N~i~slp~~------~~  157 (565)
T KOG0472|consen   87 IGELEALKSLNVSHNKLSELPE--QIGSLISLVKLDCSSNELKELPDS-IGRLLDLEDLDATNNQISSLPED------MV  157 (565)
T ss_pred             HHHHHHHHHhhcccchHhhccH--HHhhhhhhhhhhccccceeecCch-HHHHhhhhhhhccccccccCchH------HH
Confidence            3344444555555555555554  335566667777766666665443 455555555 3333444444432      22


Q ss_pred             hhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecc
Q 039042          126 FLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDN  205 (526)
Q Consensus       126 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~  205 (526)
                      .+.+|..|++.+|.++..    |.+ ..+++.|++|+.-.+ .++.+ |..++   ++.+|..|++.+| .+..+| +| 
T Consensus       158 ~~~~l~~l~~~~n~l~~l----~~~-~i~m~~L~~ld~~~N-~L~tl-P~~lg---~l~~L~~LyL~~N-ki~~lP-ef-  224 (565)
T KOG0472|consen  158 NLSKLSKLDLEGNKLKAL----PEN-HIAMKRLKHLDCNSN-LLETL-PPELG---GLESLELLYLRRN-KIRFLP-EF-  224 (565)
T ss_pred             HHHHHHHhhccccchhhC----CHH-HHHHHHHHhcccchh-hhhcC-Chhhc---chhhhHHHHhhhc-ccccCC-CC-
Confidence            478889999999988766    333 335888888888764 45665 44444   8999999999998 777777 34 


Q ss_pred             hhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeec
Q 039042          206 QEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAE  285 (526)
Q Consensus       206 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  285 (526)
                               +++..|++|+++. +.++.+|..  +...++++.+|+++++ +++++|.++      ..+.+|+.|++++|
T Consensus       225 ---------~gcs~L~Elh~g~-N~i~~lpae--~~~~L~~l~vLDLRdN-klke~Pde~------clLrsL~rLDlSNN  285 (565)
T KOG0472|consen  225 ---------PGCSLLKELHVGE-NQIEMLPAE--HLKHLNSLLVLDLRDN-KLKEVPDEI------CLLRSLERLDLSNN  285 (565)
T ss_pred             ---------CccHHHHHHHhcc-cHHHhhHHH--Hhcccccceeeecccc-ccccCchHH------HHhhhhhhhcccCC
Confidence                     6788888888875 466666655  2447889999999988 788888776      56788999999977


Q ss_pred             cccccceeccc--cccccccEEEeeeCCcccccccchhHhhcCC--CccEE--EEeec-----------cccccCCCc-C
Q 039042          286 YIITNKFIFSE--DLLCKLKCLDVEFVDELTTILSLDDFLQRFP--TLKVL--QIEGY-----------SDWLPKEKV-E  347 (526)
Q Consensus       286 ~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~--~L~~L--~l~~~-----------~~~~~~~~~-~  347 (526)
                      .+.    .+|.  +++ .|+.|.+.+++.-+   +-...++.=+  -|++|  .+.|+           ....+...+ +
T Consensus       286 ~is----~Lp~sLgnl-hL~~L~leGNPlrT---iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~  357 (565)
T KOG0472|consen  286 DIS----SLPYSLGNL-HLKFLALEGNPLRT---IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPD  357 (565)
T ss_pred             ccc----cCCcccccc-eeeehhhcCCchHH---HHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccc
Confidence            653    3443  344 77778887766433   1111111000  01111  11111           000011111 1


Q ss_pred             ccccccceEEEec-cCceeeccccccccC--cccEEEEeccC-----------------------CcccccCCCccCCCc
Q 039042          348 NGMEVIIRRVFRC-YDLKYILKQESSIMN--NLVILHVTNCH-----------------------RLINLVPSSTSFQNL  401 (526)
Q Consensus       348 ~~~~~~L~~L~l~-~~l~~~~~~~~~~l~--~L~~L~l~~c~-----------------------~l~~l~~~~~~~~~L  401 (526)
                      .....+.+.|.++ ..+..+|.+.|....  -.+..+++.+.                       .++.+|..+..+++|
T Consensus       358 ~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kL  437 (565)
T KOG0472|consen  358 IYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKL  437 (565)
T ss_pred             hhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcc
Confidence            1233455666666 666666665554321  24445555432                       222333345667888


Q ss_pred             CEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCC------------cccccCCCeeeeCccCeEecC
Q 039042          402 TSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDD------------DHDAAKDEVIAFSELNELKLL  469 (526)
Q Consensus       402 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~------------~~~~~~~~~~~~~~L~~L~l~  469 (526)
                      +.|++++. -+.++|  .-.+++..|+.|+++.. ....+|......            -...+...+..+.+|..|++.
T Consensus       438 t~L~L~NN-~Ln~LP--~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~  513 (565)
T KOG0472|consen  438 TFLDLSNN-LLNDLP--EEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQ  513 (565)
T ss_pred             eeeecccc-hhhhcc--hhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccC
Confidence            88888775 466666  34456677888888773 444444331100            000011123455666666665


Q ss_pred             CCccccccCCCCccccCCCccEEeEecCC
Q 039042          470 NLKSLRSFYSGNRALNFPSLERLLVDDCT  498 (526)
Q Consensus       470 ~~~~l~~l~~~~~~~~~~~L~~L~l~~C~  498 (526)
                      + +.+..+|..  ++++.+|++|+++|.|
T Consensus       514 n-Ndlq~IPp~--LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  514 N-NDLQQIPPI--LGNMTNLRHLELDGNP  539 (565)
T ss_pred             C-CchhhCChh--hccccceeEEEecCCc
Confidence            4 456666655  5666666666666654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.72  E-value=3.1e-19  Score=175.63  Aligned_cols=372  Identities=16%  Similarity=0.120  Sum_probs=261.7

Q ss_pred             eeccccccc--ccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhcccccccchhhhhh
Q 039042           54 ELHELQEQD--VNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANISNTLFLEK  129 (526)
Q Consensus        54 ~~l~l~~~~--~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~~  129 (526)
                      +-.+.+++.  +..||.  ....+++++.|.|.+......|.. ++++.+|+.  +..+.....-++       ...++.
T Consensus        10 rGvDfsgNDFsg~~FP~--~v~qMt~~~WLkLnrt~L~~vPeE-L~~lqkLEHLs~~HN~L~~vhGE-------Ls~Lp~   79 (1255)
T KOG0444|consen   10 RGVDFSGNDFSGDRFPH--DVEQMTQMTWLKLNRTKLEQVPEE-LSRLQKLEHLSMAHNQLISVHGE-------LSDLPR   79 (1255)
T ss_pred             ecccccCCcCCCCcCch--hHHHhhheeEEEechhhhhhChHH-HHHHhhhhhhhhhhhhhHhhhhh-------hccchh
Confidence            334444433  234555  334567788888877666555665 567777776  444333222222       223889


Q ss_pred             hhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhh
Q 039042          130 LEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEE  209 (526)
Q Consensus       130 L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~  209 (526)
                      ||.+.+..|+++..  +.|.+ +..+..|.+|+|+++ .++.+ |..+.   .-+++-.|++++| +|+.+|...+    
T Consensus        80 LRsv~~R~N~LKns--GiP~d-iF~l~dLt~lDLShN-qL~Ev-P~~LE---~AKn~iVLNLS~N-~IetIPn~lf----  146 (1255)
T KOG0444|consen   80 LRSVIVRDNNLKNS--GIPTD-IFRLKDLTILDLSHN-QLREV-PTNLE---YAKNSIVLNLSYN-NIETIPNSLF----  146 (1255)
T ss_pred             hHHHhhhccccccC--CCCch-hcccccceeeecchh-hhhhc-chhhh---hhcCcEEEEcccC-ccccCCchHH----
Confidence            99999999977643  33555 678899999999996 46665 66554   6788889999998 8888887653    


Q ss_pred             cccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCC----ceeccccccCCccccccCCcceEEEeec
Q 039042          210 RKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPE----FMVRFKRTTNDLTKKVFPNLEELIVDAE  285 (526)
Q Consensus       210 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~----l~~~~~~~~~~~~~~~l~~L~~L~l~~~  285 (526)
                           .++..|-.|++++ +++..+|..   +..+.+|++|.+++++-    +..+          +.+++|+.|.+++.
T Consensus       147 -----inLtDLLfLDLS~-NrLe~LPPQ---~RRL~~LqtL~Ls~NPL~hfQLrQL----------PsmtsL~vLhms~T  207 (1255)
T KOG0444|consen  147 -----INLTDLLFLDLSN-NRLEMLPPQ---IRRLSMLQTLKLSNNPLNHFQLRQL----------PSMTSLSVLHMSNT  207 (1255)
T ss_pred             -----HhhHhHhhhcccc-chhhhcCHH---HHHHhhhhhhhcCCChhhHHHHhcC----------ccchhhhhhhcccc
Confidence                 4678888899986 688888888   77899999999998863    3333          35677888888854


Q ss_pred             cccccceecccc--ccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-c
Q 039042          286 YIITNKFIFSED--LLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-Y  361 (526)
Q Consensus       286 ~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~  361 (526)
                      .  .++..+|..  .+.+|..++++.++ ++  ..|. .+-.+++|++|+++.+ .+.+...   ...-.+|++|+++ +
T Consensus       208 q--RTl~N~Ptsld~l~NL~dvDlS~N~-Lp--~vPe-cly~l~~LrrLNLS~N~iteL~~~---~~~W~~lEtLNlSrN  278 (1255)
T KOG0444|consen  208 Q--RTLDNIPTSLDDLHNLRDVDLSENN-LP--IVPE-CLYKLRNLRRLNLSGNKITELNMT---EGEWENLETLNLSRN  278 (1255)
T ss_pred             c--chhhcCCCchhhhhhhhhccccccC-CC--cchH-HHhhhhhhheeccCcCceeeeecc---HHHHhhhhhhccccc
Confidence            3  233555553  67789999998754 44  3454 6678899999999955 3322211   0233588999999 8


Q ss_pred             CceeeccccccccCcccEEEEeccCC-cccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccce
Q 039042          362 DLKYILKQESSIMNNLVILHVTNCHR-LINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITE  440 (526)
Q Consensus       362 ~l~~~~~~~~~~l~~L~~L~l~~c~~-l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~  440 (526)
                      .+..+| ..+..++.|+.|.+.+++. +..+|.+++.+..|+.+...+. .++-+|  ..+..+..|+.|.+.. +.+-.
T Consensus       279 QLt~LP-~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVP--EglcRC~kL~kL~L~~-NrLiT  353 (1255)
T KOG0444|consen  279 QLTVLP-DAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVP--EGLCRCVKLQKLKLDH-NRLIT  353 (1255)
T ss_pred             hhccch-HHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCc--hhhhhhHHHHHhcccc-cceee
Confidence            888885 5667789999999987753 5789999999999999988775 677776  6788899999999965 66777


Q ss_pred             ecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEe
Q 039042          441 IVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVD  495 (526)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~  495 (526)
                      +|+.            ++.++.|+.|++...+++.--|...  ..-.+|+.-+|+
T Consensus       354 LPea------------IHlL~~l~vLDlreNpnLVMPPKP~--da~~~lefYNID  394 (1255)
T KOG0444|consen  354 LPEA------------IHLLPDLKVLDLRENPNLVMPPKPN--DARKKLEFYNID  394 (1255)
T ss_pred             chhh------------hhhcCCcceeeccCCcCccCCCCcc--hhhhcceeeecc
Confidence            7764            6689999999999999887655432  112455555544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.62  E-value=3.4e-18  Score=160.22  Aligned_cols=343  Identities=18%  Similarity=0.145  Sum_probs=167.6

Q ss_pred             CCcccEEEEecCCCCCCchhhhhhccCccccccccc-chhhhcccccccchhhhhhhhhhcccccccccccccccccccc
Q 039042           75 SSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQS-NELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTC  153 (526)
Q Consensus        75 l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~-l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~  153 (526)
                      +.+|..|++.++.....|+.... +++|+++..|.+ ++.++.      ..+.+.+|..|++..|.+...    | + |.
T Consensus       159 ~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~------~lg~l~~L~~LyL~~Nki~~l----P-e-f~  225 (565)
T KOG0472|consen  159 LSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPP------ELGGLESLELLYLRRNKIRFL----P-E-FP  225 (565)
T ss_pred             HHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCCh------hhcchhhhHHHHhhhcccccC----C-C-CC
Confidence            44455555555444444333332 444554333332 223332      222366667777777655544    2 1 44


Q ss_pred             cCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccc
Q 039042          154 GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTS  233 (526)
Q Consensus       154 ~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~  233 (526)
                      .|+.|+.+++..+. ++- .|....+  .++++..|++..| .++.+|.+.          ..+++|++|++++ +.++.
T Consensus       226 gcs~L~Elh~g~N~-i~~-lpae~~~--~L~~l~vLDLRdN-klke~Pde~----------clLrsL~rLDlSN-N~is~  289 (565)
T KOG0472|consen  226 GCSLLKELHVGENQ-IEM-LPAEHLK--HLNSLLVLDLRDN-KLKEVPDEI----------CLLRSLERLDLSN-NDISS  289 (565)
T ss_pred             ccHHHHHHHhcccH-HHh-hHHHHhc--ccccceeeecccc-ccccCchHH----------HHhhhhhhhcccC-Ccccc
Confidence            66667777766543 222 3544443  6677777777776 566666554          4566777777775 45666


Q ss_pred             cccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecccc------ccceecccc------cccc
Q 039042          234 FCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYII------TNKFIFSED------LLCK  301 (526)
Q Consensus       234 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~------~~~~~~~~~------~~~~  301 (526)
                      +|..   ++++ +|+.|.+.+++ +..+-.++..+-+...+.-|+. .+.+..+.      .+-...+..      ...+
T Consensus       290 Lp~s---Lgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs-~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~  363 (565)
T KOG0472|consen  290 LPYS---LGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRS-KIKDDGLSQSEGGTETAMTLPSESFPDIYAIIT  363 (565)
T ss_pred             CCcc---cccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHH-hhccCCCCCCcccccccCCCCCCcccchhhhhh
Confidence            6666   6666 77777777664 2222222111000000111111 00000000      000000111      1224


Q ss_pred             ccEEEeeeCCcccccccchhHhhcCC--CccEEEEeec-cccccCC------------------Cc---CccccccceEE
Q 039042          302 LKCLDVEFVDELTTILSLDDFLQRFP--TLKVLQIEGY-SDWLPKE------------------KV---ENGMEVIIRRV  357 (526)
Q Consensus       302 L~~L~l~~~~~l~~~~~~~~~l~~l~--~L~~L~l~~~-~~~~~~~------------------~~---~~~~~~~L~~L  357 (526)
                      .+.|+++. ..++  ..|...+..-.  -...++++.+ ...+|..                  .+   ....+++|..|
T Consensus       364 tkiL~~s~-~qlt--~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L  440 (565)
T KOG0472|consen  364 TKILDVSD-KQLT--LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFL  440 (565)
T ss_pred             hhhhcccc-cccc--cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceee
Confidence            45555544 2233  44554444322  1333444311 1111110                  00   01334556666


Q ss_pred             Eec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEcccc
Q 039042          358 FRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCA  436 (526)
Q Consensus       358 ~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~  436 (526)
                      +++ +-+.++|. .+..+..|+.|+++.+ .+..+|.....+..++.+-.++ .++..+++ ..+..+.+|..|++.+ +
T Consensus       441 ~L~NN~Ln~LP~-e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~-nqi~~vd~-~~l~nm~nL~tLDL~n-N  515 (565)
T KOG0472|consen  441 DLSNNLLNDLPE-EMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASN-NQIGSVDP-SGLKNMRNLTTLDLQN-N  515 (565)
T ss_pred             ecccchhhhcch-hhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhcc-ccccccCh-HHhhhhhhcceeccCC-C
Confidence            666 44444433 3334455666666655 4444443333333344433333 35555553 3577889999999988 6


Q ss_pred             ccceecccccCCcccccCCCeeeeCccCeEecCCCc
Q 039042          437 MITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLK  472 (526)
Q Consensus       437 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  472 (526)
                      .+..+|..            ++++.+|++|.+++.+
T Consensus       516 dlq~IPp~------------LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  516 DLQQIPPI------------LGNMTNLRHLELDGNP  539 (565)
T ss_pred             chhhCChh------------hccccceeEEEecCCc
Confidence            68888876            4478999999999965

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.60  E-value=4.9e-17  Score=167.30  Aligned_cols=388  Identities=19%  Similarity=0.180  Sum_probs=205.0

Q ss_pred             ceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc-ccccccchhhhcccccccchhhhhhhh
Q 039042           53 LELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES-ANDMQSNELILEDNANISNTLFLEKLE  131 (526)
Q Consensus        53 L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~-i~~~~~l~~~~~~~~~~~~~~~l~~L~  131 (526)
                      |+.++++.+.+..||.  ..-.+..|+.|+++++.....|.+ ..++.+|++ +..|+.++..+.+.      ..+.+|.
T Consensus        47 L~~l~lsnn~~~~fp~--~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~n~l~~lP~~~------~~lknl~  117 (1081)
T KOG0618|consen   47 LKSLDLSNNQISSFPI--QITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKNNRLQSLPASI------SELKNLQ  117 (1081)
T ss_pred             eEEeeccccccccCCc--hhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheeccchhhcCchhH------Hhhhccc
Confidence            6666666666666665  334566777777776665555643 456666666 55555555555322      1255666


Q ss_pred             hhcccccccccccccccccccccCCcccEEEeccCCCceec------------------CCcccccccccccccE-Eeee
Q 039042          132 KLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCL------------------FSSCTVSNNSFVRLQY-IRIE  192 (526)
Q Consensus       132 ~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l------------------~p~~l~~l~~l~~L~~-L~l~  192 (526)
                      +|++++|.+..+...     +..+..+..+..++|..+..+                  ++.      ....+++ |++.
T Consensus       118 ~LdlS~N~f~~~Pl~-----i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~------~i~~l~~~ldLr  186 (1081)
T KOG0618|consen  118 YLDLSFNHFGPIPLV-----IEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLI------DIYNLTHQLDLR  186 (1081)
T ss_pred             ccccchhccCCCchh-----HHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhc------chhhhheeeecc
Confidence            666666644432110     112233333333332111100                  111      1111222 3333


Q ss_pred             ccccccEEEeecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCcccc
Q 039042          193 KCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKK  272 (526)
Q Consensus       193 ~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  272 (526)
                      +| .+..+..            ..+++|+.++..+ ..+..+      ..+-++|+.|...+|+-.+ ....       +
T Consensus       187 ~N-~~~~~dl------------s~~~~l~~l~c~r-n~ls~l------~~~g~~l~~L~a~~n~l~~-~~~~-------p  238 (1081)
T KOG0618|consen  187 YN-EMEVLDL------------SNLANLEVLHCER-NQLSEL------EISGPSLTALYADHNPLTT-LDVH-------P  238 (1081)
T ss_pred             cc-hhhhhhh------------hhccchhhhhhhh-cccceE------EecCcchheeeeccCccee-eccc-------c
Confidence            33 1111111            2344444444432 233333      1123555566655554332 1111       2


Q ss_pred             ccCCcceEEEeeccccccceeccc--cccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCcc
Q 039042          273 VFPNLEELIVDAEYIITNKFIFSE--DLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENG  349 (526)
Q Consensus       273 ~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~  349 (526)
                      ...+|+.++++.+.+.    .+|.  ..+++|+.+.+..+.. .  .+|. .+...++|+++.+. |...-+|..   ..
T Consensus       239 ~p~nl~~~dis~n~l~----~lp~wi~~~~nle~l~~n~N~l-~--~lp~-ri~~~~~L~~l~~~~nel~yip~~---le  307 (1081)
T KOG0618|consen  239 VPLNLQYLDISHNNLS----NLPEWIGACANLEALNANHNRL-V--ALPL-RISRITSLVSLSAAYNELEYIPPF---LE  307 (1081)
T ss_pred             ccccceeeecchhhhh----cchHHHHhcccceEecccchhH-H--hhHH-HHhhhhhHHHHHhhhhhhhhCCCc---cc
Confidence            3455666666644331    2332  1355666666655443 2  2332 12233444444444 222222211   14


Q ss_pred             ccccceEEEec-cCceeecccccccc-------------------------CcccEEEEeccCCcccccCCCccCCCcCE
Q 039042          350 MEVIIRRVFRC-YDLKYILKQESSIM-------------------------NNLVILHVTNCHRLINLVPSSTSFQNLTS  403 (526)
Q Consensus       350 ~~~~L~~L~l~-~~l~~~~~~~~~~l-------------------------~~L~~L~l~~c~~l~~l~~~~~~~~~L~~  403 (526)
                      .+.+|++|++. +++..+++..+..+                         +.|+.|++.++..-....+-+..+.+|+.
T Consensus       308 ~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKV  387 (1081)
T KOG0618|consen  308 GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKV  387 (1081)
T ss_pred             ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceee
Confidence            56788888888 77777766443322                         33444444444433444456778899999


Q ss_pred             EEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCcc
Q 039042          404 LEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRA  483 (526)
Q Consensus       404 L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~  483 (526)
                      |+++.. ++..+|. +....+..|++|++++ +.++.++..            +..++.|+.|..-+ +.+..+|.   +
T Consensus       388 LhLsyN-rL~~fpa-s~~~kle~LeeL~LSG-NkL~~Lp~t------------va~~~~L~tL~ahs-N~l~~fPe---~  448 (1081)
T KOG0618|consen  388 LHLSYN-RLNSFPA-SKLRKLEELEELNLSG-NKLTTLPDT------------VANLGRLHTLRAHS-NQLLSFPE---L  448 (1081)
T ss_pred             eeeccc-ccccCCH-HHHhchHHhHHHhccc-chhhhhhHH------------HHhhhhhHHHhhcC-Cceeechh---h
Confidence            999885 6776664 4677889999999999 678888765            33677888887754 56777773   5


Q ss_pred             ccCCCccEEeEecCCCccccCCC-CCCCcccceEEec
Q 039042          484 LNFPSLERLLVDDCTNMKGFSRG-ELSTPVLHKVQLN  519 (526)
Q Consensus       484 ~~~~~L~~L~l~~C~~l~~l~~~-~~~~~~L~~l~l~  519 (526)
                      ..++.|+.++++ |.+|+.+--. ..++|+|+.++++
T Consensus       449 ~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlS  484 (1081)
T KOG0618|consen  449 AQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLS  484 (1081)
T ss_pred             hhcCcceEEecc-cchhhhhhhhhhCCCcccceeecc
Confidence            677888888887 5667654322 2334788888887

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.45  E-value=1.6e-15  Score=156.25  Aligned_cols=358  Identities=16%  Similarity=0.135  Sum_probs=184.8

Q ss_pred             hccccccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhccc-----
Q 039042           46 QLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDN-----  118 (526)
Q Consensus        46 ~l~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~-----  118 (526)
                      ...++.+|+.+.|..+.....|.  ....+.+|..|+++++.+...|.. +..+..++.  .+++..+...+..+     
T Consensus        86 s~~~~~~l~~lnL~~n~l~~lP~--~~~~lknl~~LdlS~N~f~~~Pl~-i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~  162 (1081)
T KOG0618|consen   86 SCSNMRNLQYLNLKNNRLQSLPA--SISELKNLQYLDLSFNHFGPIPLV-IEVLTAEEELAASNNEKIQRLGQTSIKKLD  162 (1081)
T ss_pred             hhhhhhcchhheeccchhhcCch--hHHhhhcccccccchhccCCCchh-HHhhhHHHHHhhhcchhhhhhccccchhhh
Confidence            34455556666666555555554  234456677777777766666443 223333333  22221111111100     


Q ss_pred             ---cc--ccchhhhhhhhh-hcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeee
Q 039042          119 ---AN--ISNTLFLEKLEK-LELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIE  192 (526)
Q Consensus       119 ---~~--~~~~~~l~~L~~-L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~  192 (526)
                         ..  .........|+. |+|.+|.+...    -   ..++.+|+.|....+. +..+ -.      ..++|+.|+..
T Consensus       163 l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~----d---ls~~~~l~~l~c~rn~-ls~l-~~------~g~~l~~L~a~  227 (1081)
T KOG0618|consen  163 LRLNVLGGSFLIDIYNLTHQLDLRYNEMEVL----D---LSNLANLEVLHCERNQ-LSEL-EI------SGPSLTALYAD  227 (1081)
T ss_pred             hhhhhcccchhcchhhhheeeecccchhhhh----h---hhhccchhhhhhhhcc-cceE-Ee------cCcchheeeec
Confidence               00  000111223333 66666654411    0   2356666666666542 3322 11      34567777777


Q ss_pred             ccccccEEEeecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCcccc
Q 039042          193 KCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKK  272 (526)
Q Consensus       193 ~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  272 (526)
                      .|... .+...           ..-.+|++++++. .+++.+|.-   ++.+++|+.+.+.++ ++..+|..+      .
T Consensus       228 ~n~l~-~~~~~-----------p~p~nl~~~dis~-n~l~~lp~w---i~~~~nle~l~~n~N-~l~~lp~ri------~  284 (1081)
T KOG0618|consen  228 HNPLT-TLDVH-----------PVPLNLQYLDISH-NNLSNLPEW---IGACANLEALNANHN-RLVALPLRI------S  284 (1081)
T ss_pred             cCcce-eeccc-----------cccccceeeecch-hhhhcchHH---HHhcccceEecccch-hHHhhHHHH------h
Confidence            76433 22111           1234566777665 455555533   556677777766665 445555444      3


Q ss_pred             ccCCcceEEEeeccccccceecccc--ccccccEEEeeeCCcccccccchhHhhcCCC-ccEEEEeec------------
Q 039042          273 VFPNLEELIVDAEYIITNKFIFSED--LLCKLKCLDVEFVDELTTILSLDDFLQRFPT-LKVLQIEGY------------  337 (526)
Q Consensus       273 ~l~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~-L~~L~l~~~------------  337 (526)
                      ...+|+.|.+..|++    ..+|..  ....|++|++..+. +.  .+|..++.-... |+.|..++.            
T Consensus       285 ~~~~L~~l~~~~nel----~yip~~le~~~sL~tLdL~~N~-L~--~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~  357 (1081)
T KOG0618|consen  285 RITSLVSLSAAYNEL----EYIPPFLEGLKSLRTLDLQSNN-LP--SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN  357 (1081)
T ss_pred             hhhhHHHHHhhhhhh----hhCCCcccccceeeeeeehhcc-cc--ccchHHHhhhhHHHHHHhhhhccccccccccchh
Confidence            345555555554433    222221  34556666665533 22  344433333222 333333322            


Q ss_pred             ---------------cccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCc
Q 039042          338 ---------------SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNL  401 (526)
Q Consensus       338 ---------------~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L  401 (526)
                                     ...||.    ...++.|+.|+++ +.+..++...+..+..|++|+++|+ +++.+|..+..++.|
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~----l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L  432 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPV----LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRL  432 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhh----hccccceeeeeecccccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhh
Confidence                           112221    1445678888887 7777777777777788888888876 566666666667777


Q ss_pred             CEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeee-CccCeEecCCCcc
Q 039042          402 TSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAF-SELNELKLLNLKS  473 (526)
Q Consensus       402 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~  473 (526)
                      ++|...+. ++..+|   -...++.|+.+|++. +++.++.....            .. |+|++|++++.+.
T Consensus       433 ~tL~ahsN-~l~~fP---e~~~l~qL~~lDlS~-N~L~~~~l~~~------------~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  433 HTLRAHSN-QLLSFP---ELAQLPQLKVLDLSC-NNLSEVTLPEA------------LPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             HHHhhcCC-ceeech---hhhhcCcceEEeccc-chhhhhhhhhh------------CCCcccceeeccCCcc
Confidence            77766543 555555   344667888888854 55665544322            22 6788888877554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.38  E-value=2.7e-12  Score=136.17  Aligned_cols=232  Identities=19%  Similarity=0.089  Sum_probs=108.6

Q ss_pred             hhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchh
Q 039042          128 EKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQE  207 (526)
Q Consensus       128 ~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~  207 (526)
                      ++|+.|++.+|+++.+    |.    ..++|++|++++| .++.+ |.      ..++|++|++.+| .+..++.     
T Consensus       222 ~~L~~L~L~~N~Lt~L----P~----lp~~Lk~LdLs~N-~LtsL-P~------lp~sL~~L~Ls~N-~L~~Lp~-----  279 (788)
T PRK15387        222 AHITTLVIPDNNLTSL----PA----LPPELRTLEVSGN-QLTSL-PV------LPPGLLELSIFSN-PLTHLPA-----  279 (788)
T ss_pred             cCCCEEEccCCcCCCC----CC----CCCCCcEEEecCC-ccCcc-cC------cccccceeeccCC-chhhhhh-----
Confidence            3566666666666654    21    2466666776664 34443 32      2346666666666 3444432     


Q ss_pred             hhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccc
Q 039042          208 EERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYI  287 (526)
Q Consensus       208 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  287 (526)
                              .+.+|+.|+++++ .++.+|..      .++|+.|++++| ++..+|.         ...+|+.|++++|.+
T Consensus       280 --------lp~~L~~L~Ls~N-~Lt~LP~~------p~~L~~LdLS~N-~L~~Lp~---------lp~~L~~L~Ls~N~L  334 (788)
T PRK15387        280 --------LPSGLCKLWIFGN-QLTSLPVL------PPGLQELSVSDN-QLASLPA---------LPSELCKLWAYNNQL  334 (788)
T ss_pred             --------chhhcCEEECcCC-cccccccc------ccccceeECCCC-ccccCCC---------CcccccccccccCcc
Confidence                    1345666666653 45555432      356666666665 4554432         123455666665544


Q ss_pred             cccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCcee
Q 039042          288 ITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKY  365 (526)
Q Consensus       288 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~  365 (526)
                      .    .+|. .+.+|+.|++++|. ++  .+|.    ..++|+.|.+..+ ...+|      ...++|+.|+++ +.+..
T Consensus       335 ~----~LP~-lp~~Lq~LdLS~N~-Ls--~LP~----lp~~L~~L~Ls~N~L~~LP------~l~~~L~~LdLs~N~Lt~  396 (788)
T PRK15387        335 T----SLPT-LPSGLQELSVSDNQ-LA--SLPT----LPSELYKLWAYNNRLTSLP------ALPSGLKELIVSGNRLTS  396 (788)
T ss_pred             c----cccc-cccccceEecCCCc-cC--CCCC----CCcccceehhhccccccCc------ccccccceEEecCCcccC
Confidence            2    2332 22356666666543 22  2332    1234444544422 22222      112345555555 44444


Q ss_pred             eccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccc
Q 039042          366 ILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESC  435 (526)
Q Consensus       366 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c  435 (526)
                      ++..    .++|+.|+++++. +..+|.   .+.+|+.|+++++ +++.+|  ..+..+++|+.|+++++
T Consensus       397 LP~l----~s~L~~LdLS~N~-LssIP~---l~~~L~~L~Ls~N-qLt~LP--~sl~~L~~L~~LdLs~N  455 (788)
T PRK15387        397 LPVL----PSELKELMVSGNR-LTSLPM---LPSGLLSLSVYRN-QLTRLP--ESLIHLSSETTVNLEGN  455 (788)
T ss_pred             CCCc----ccCCCEEEccCCc-CCCCCc---chhhhhhhhhccC-cccccC--hHHhhccCCCeEECCCC
Confidence            3321    2345555555542 333332   1234445555443 344443  23344455555555543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.36  E-value=3.9e-12  Score=135.02  Aligned_cols=254  Identities=19%  Similarity=0.128  Sum_probs=178.7

Q ss_pred             CcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccc
Q 039042          156 QNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFC  235 (526)
Q Consensus       156 ~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~  235 (526)
                      .+-..|+++++ .++.+ |..+.     ++|+.|++.+| .+..+|.             ..++|++|+++++ .++.+|
T Consensus       201 ~~~~~LdLs~~-~LtsL-P~~l~-----~~L~~L~L~~N-~Lt~LP~-------------lp~~Lk~LdLs~N-~LtsLP  258 (788)
T PRK15387        201 NGNAVLNVGES-GLTTL-PDCLP-----AHITTLVIPDN-NLTSLPA-------------LPPELRTLEVSGN-QLTSLP  258 (788)
T ss_pred             CCCcEEEcCCC-CCCcC-Ccchh-----cCCCEEEccCC-cCCCCCC-------------CCCCCcEEEecCC-ccCccc
Confidence            45678899987 56665 65544     47999999997 6776653             3578999999874 777776


Q ss_pred             cCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCcccc
Q 039042          236 TGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTT  315 (526)
Q Consensus       236 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  315 (526)
                      ..      .++|+.|++++| .+..++.         .+.+|+.|++++|.+.    .+|. .+++|+.|++++|. ++ 
T Consensus       259 ~l------p~sL~~L~Ls~N-~L~~Lp~---------lp~~L~~L~Ls~N~Lt----~LP~-~p~~L~~LdLS~N~-L~-  315 (788)
T PRK15387        259 VL------PPGLLELSIFSN-PLTHLPA---------LPSGLCKLWIFGNQLT----SLPV-LPPGLQELSVSDNQ-LA-  315 (788)
T ss_pred             Cc------ccccceeeccCC-chhhhhh---------chhhcCEEECcCCccc----cccc-cccccceeECCCCc-cc-
Confidence            43      578999999988 5666652         3567889999987663    3444 35789999999874 44 


Q ss_pred             cccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccC
Q 039042          316 ILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVP  393 (526)
Q Consensus       316 ~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~  393 (526)
                       .+|.    ...+|+.|.+. |....+|.      ..++|++|+++ +.+..++..    ..+|+.|+++++ .+..+|.
T Consensus       316 -~Lp~----lp~~L~~L~Ls~N~L~~LP~------lp~~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls~N-~L~~LP~  379 (788)
T PRK15387        316 -SLPA----LPSELCKLWAYNNQLTSLPT------LPSGLQELSVSDNQLASLPTL----PSELYKLWAYNN-RLTSLPA  379 (788)
T ss_pred             -cCCC----CcccccccccccCccccccc------cccccceEecCCCccCCCCCC----Ccccceehhhcc-ccccCcc
Confidence             3332    12467777777 33444442      22579999998 888877542    357888888875 4555653


Q ss_pred             CCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCcc
Q 039042          394 SSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKS  473 (526)
Q Consensus       394 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  473 (526)
                         .+.+|+.|+++++ .++.+|..     .++|+.|+++++ .+..+|.               .+.+|+.|++++ ++
T Consensus       380 ---l~~~L~~LdLs~N-~Lt~LP~l-----~s~L~~LdLS~N-~LssIP~---------------l~~~L~~L~Ls~-Nq  433 (788)
T PRK15387        380 ---LPSGLKELIVSGN-RLTSLPVL-----PSELKELMVSGN-RLTSLPM---------------LPSGLLSLSVYR-NQ  433 (788)
T ss_pred             ---cccccceEEecCC-cccCCCCc-----ccCCCEEEccCC-cCCCCCc---------------chhhhhhhhhcc-Cc
Confidence               2357899999876 57766521     368899999885 4666654               235788899987 56


Q ss_pred             ccccCCCCccccCCCccEEeEecCC
Q 039042          474 LRSFYSGNRALNFPSLERLLVDDCT  498 (526)
Q Consensus       474 l~~l~~~~~~~~~~~L~~L~l~~C~  498 (526)
                      ++.+|..  +..+++|+.|++++++
T Consensus       434 Lt~LP~s--l~~L~~L~~LdLs~N~  456 (788)
T PRK15387        434 LTRLPES--LIHLSSETTVNLEGNP  456 (788)
T ss_pred             ccccChH--HhhccCCCeEECCCCC
Confidence            8888875  6678999999998864

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.27  E-value=3.5e-14  Score=134.43  Aligned_cols=188  Identities=15%  Similarity=0.147  Sum_probs=103.9

Q ss_pred             hhhhhhccccc-ccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          128 EKLEKLELRSI-NIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       128 ~~L~~L~L~~~-~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      ..||.|.+.++ .....-....   ..+++|++.|.+.+|.++++-.-..+++  .+++|++|++..|..+.........
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~---~~~CpnIehL~l~gc~~iTd~s~~sla~--~C~~l~~l~L~~c~~iT~~~Lk~la  212 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTF---ASNCPNIEHLALYGCKKITDSSLLSLAR--YCRKLRHLNLHSCSSITDVSLKYLA  212 (483)
T ss_pred             cccccccccccccCCcchhhHH---hhhCCchhhhhhhcceeccHHHHHHHHH--hcchhhhhhhcccchhHHHHHHHHH
Confidence            45788888888 3333222333   2378888888888888776543344555  6788888888888777655433222


Q ss_pred             hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY  286 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  286 (526)
                              ..+++|++|+++.|+.+++=... .....+..++++...+|..+..-......    ....-+.++++..|.
T Consensus       213 --------~gC~kL~~lNlSwc~qi~~~gv~-~~~rG~~~l~~~~~kGC~e~~le~l~~~~----~~~~~i~~lnl~~c~  279 (483)
T KOG4341|consen  213 --------EGCRKLKYLNLSWCPQISGNGVQ-ALQRGCKELEKLSLKGCLELELEALLKAA----AYCLEILKLNLQHCN  279 (483)
T ss_pred             --------HhhhhHHHhhhccCchhhcCcch-HHhccchhhhhhhhcccccccHHHHHHHh----ccChHhhccchhhhc
Confidence                    46888888888888776651111 11334566777777777554422211111    234445555544332


Q ss_pred             ccccceecc-ccccccccEEEeeeCCcccccccchhHhh-cCCCccEEEEe
Q 039042          287 IITNKFIFS-EDLLCKLKCLDVEFVDELTTILSLDDFLQ-RFPTLKVLQIE  335 (526)
Q Consensus       287 ~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~l~-~l~~L~~L~l~  335 (526)
                      ..++...+. ...+..|+.++.++|..++  ..+.+.++ +.++|+.+.+.
T Consensus       280 ~lTD~~~~~i~~~c~~lq~l~~s~~t~~~--d~~l~aLg~~~~~L~~l~l~  328 (483)
T KOG4341|consen  280 QLTDEDLWLIACGCHALQVLCYSSCTDIT--DEVLWALGQHCHNLQVLELS  328 (483)
T ss_pred             cccchHHHHHhhhhhHhhhhcccCCCCCc--hHHHHHHhcCCCceEEEecc
Confidence            222211111 1245566777777766655  33333333 34444444444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.24  E-value=1.3e-11  Score=131.69  Aligned_cols=137  Identities=16%  Similarity=0.138  Sum_probs=69.7

Q ss_pred             hhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchh
Q 039042          128 EKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQE  207 (526)
Q Consensus       128 ~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~  207 (526)
                      +.|+.|++++|.++.+    |..   .+++|++|++++|. ++.+ |..+     ..+|+.|++++| .+..+|..    
T Consensus       199 ~~L~~L~Ls~N~LtsL----P~~---l~~nL~~L~Ls~N~-LtsL-P~~l-----~~~L~~L~Ls~N-~L~~LP~~----  259 (754)
T PRK15370        199 EQITTLILDNNELKSL----PEN---LQGNIKTLYANSNQ-LTSI-PATL-----PDTIQEMELSIN-RITELPER----  259 (754)
T ss_pred             cCCcEEEecCCCCCcC----Chh---hccCCCEEECCCCc-cccC-Chhh-----hccccEEECcCC-ccCcCChh----
Confidence            4566666666666644    322   23566666666653 4443 4322     235666666666 44444432    


Q ss_pred             hhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccc
Q 039042          208 EERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYI  287 (526)
Q Consensus       208 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  287 (526)
                              ...+|++|++++ +.+..+|..   +  .++|+.|++++| +++.+|...        .++|+.|++++|.+
T Consensus       260 --------l~s~L~~L~Ls~-N~L~~LP~~---l--~~sL~~L~Ls~N-~Lt~LP~~l--------p~sL~~L~Ls~N~L  316 (754)
T PRK15370        260 --------LPSALQSLDLFH-NKISCLPEN---L--PEELRYLSVYDN-SIRTLPAHL--------PSGITHLNVQSNSL  316 (754)
T ss_pred             --------HhCCCCEEECcC-CccCccccc---c--CCCCcEEECCCC-ccccCcccc--------hhhHHHHHhcCCcc
Confidence                    123566666663 355555443   1  246666666665 455444321        23456666665544


Q ss_pred             cccceeccccccccccEEEeeeC
Q 039042          288 ITNKFIFSEDLLCKLKCLDVEFV  310 (526)
Q Consensus       288 ~~~~~~~~~~~~~~L~~L~l~~~  310 (526)
                      .    .+|...+++|+.|++++|
T Consensus       317 t----~LP~~l~~sL~~L~Ls~N  335 (754)
T PRK15370        317 T----ALPETLPPGLKTLEAGEN  335 (754)
T ss_pred             c----cCCccccccceeccccCC
Confidence            2    233333345555555554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.21  E-value=2.3e-11  Score=129.89  Aligned_cols=38  Identities=11%  Similarity=-0.000  Sum_probs=24.7

Q ss_pred             ceecccccccccccccccccccCCcccEEEEecCCCCCCchh
Q 039042           53 LELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSA   94 (526)
Q Consensus        53 L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~   94 (526)
                      ...++++..+++.+|..+    .++|+.|++++|.....|..
T Consensus       180 ~~~L~L~~~~LtsLP~~I----p~~L~~L~Ls~N~LtsLP~~  217 (754)
T PRK15370        180 KTELRLKILGLTTIPACI----PEQITTLILDNNELKSLPEN  217 (754)
T ss_pred             ceEEEeCCCCcCcCCccc----ccCCcEEEecCCCCCcCChh
Confidence            455666666666777643    25788888888865544654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.11  E-value=2.4e-12  Score=122.20  Aligned_cols=59  Identities=17%  Similarity=0.326  Sum_probs=34.8

Q ss_pred             cCcccEEEEeccCCcccc-cCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEE
Q 039042          374 MNNLVILHVTNCHRLINL-VPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKI  432 (526)
Q Consensus       374 l~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i  432 (526)
                      +..|+.+.+++|+.+... -..+...++|+.+++.+|.++..-+...+..++|++++.-.
T Consensus       400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY  459 (483)
T ss_pred             ccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence            456666666666665321 12334556677777777766666655556666666665443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.10  E-value=1.9e-12  Score=121.84  Aligned_cols=277  Identities=15%  Similarity=0.190  Sum_probs=161.5

Q ss_pred             CcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccccccchhhhhhhhhhcccccccccccccccccccccC
Q 039042           76 SQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGI  155 (526)
Q Consensus        76 ~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l  155 (526)
                      +.-+.+.|+.|.....|...|+.                            +++||+|+|++|+|+.+-...    |..+
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~----------------------------l~~LRrLdLS~N~Is~I~p~A----F~GL  114 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKT----------------------------LHRLRRLDLSKNNISFIAPDA----FKGL  114 (498)
T ss_pred             CcceEEEeccCCcccCChhhccc----------------------------hhhhceecccccchhhcChHh----hhhh
Confidence            45667777777766666655544                            777888888888777764333    4457


Q ss_pred             CcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccc
Q 039042          156 QNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFC  235 (526)
Q Consensus       156 ~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~  235 (526)
                      ++|.+|.+.++++++++ |.....  +|.+|+.|.+.-| .+.-+....         +..+++|..|.+.+ +.++.++
T Consensus       115 ~~l~~Lvlyg~NkI~~l-~k~~F~--gL~slqrLllNan-~i~Cir~~a---------l~dL~~l~lLslyD-n~~q~i~  180 (498)
T KOG4237|consen  115 ASLLSLVLYGNNKITDL-PKGAFG--GLSSLQRLLLNAN-HINCIRQDA---------LRDLPSLSLLSLYD-NKIQSIC  180 (498)
T ss_pred             HhhhHHHhhcCCchhhh-hhhHhh--hHHHHHHHhcChh-hhcchhHHH---------HHHhhhcchhcccc-hhhhhhc
Confidence            77888888887777776 443332  7777777777655 333332211         13466666666655 3455555


Q ss_pred             cCcccccCCCCccEEEeccCC-----CceeccccccCCcc-ccccCCcceEEEeeccccccceecccc-ccccccEE---
Q 039042          236 TGDVHMLEFPSLKELWISRCP-----EFMVRFKRTTNDLT-KKVFPNLEELIVDAEYIITNKFIFSED-LLCKLKCL---  305 (526)
Q Consensus       236 ~~~~~~~~l~~L~~L~l~~c~-----~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L---  305 (526)
                      .+.  +..+.+++.+.+..++     ++...........+ ...+.......+....+    ...... ..-+++.+   
T Consensus       181 ~~t--f~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri----~q~~a~kf~c~~esl~s~  254 (498)
T KOG4237|consen  181 KGT--FQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRI----NQEDARKFLCSLESLPSR  254 (498)
T ss_pred             ccc--ccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHh----cccchhhhhhhHHhHHHh
Confidence            543  5566666666665543     11111100000000 00000000000000100    111111 11112222   


Q ss_pred             EeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEe
Q 039042          306 DVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVT  383 (526)
Q Consensus       306 ~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~  383 (526)
                      ..+.|....  .-|...++.+++|++|+++.+ .+.+...+|  ..+..+++|.+. ++++.+....|..+..|+.|++.
T Consensus       255 ~~~~d~~d~--~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF--e~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~  330 (498)
T KOG4237|consen  255 LSSEDFPDS--ICPAKCFKKLPNLRKLNLSNNKITRIEDGAF--EGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLY  330 (498)
T ss_pred             hccccCcCC--cChHHHHhhcccceEeccCCCccchhhhhhh--cchhhhhhhhcCcchHHHHHHHhhhccccceeeeec
Confidence            222332222  567778999999999999966 555555554  667889999999 99999988899999999999999


Q ss_pred             ccCCcccccCCCccCCCcCEEEEcc
Q 039042          384 NCHRLINLVPSSTSFQNLTSLEISY  408 (526)
Q Consensus       384 ~c~~l~~l~~~~~~~~~L~~L~l~~  408 (526)
                      ++..-.-.|..+....+|.+|.+-.
T Consensus       331 ~N~it~~~~~aF~~~~~l~~l~l~~  355 (498)
T KOG4237|consen  331 DNQITTVAPGAFQTLFSLSTLNLLS  355 (498)
T ss_pred             CCeeEEEecccccccceeeeeehcc
Confidence            9866555666677778888887764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.01  E-value=9.3e-11  Score=127.29  Aligned_cols=131  Identities=21%  Similarity=0.337  Sum_probs=86.2

Q ss_pred             ccccccCcccEEEEeccCCcccccC----C-Cc-cCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceec
Q 039042          369 QESSIMNNLVILHVTNCHRLINLVP----S-ST-SFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIV  442 (526)
Q Consensus       369 ~~~~~l~~L~~L~l~~c~~l~~l~~----~-~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~  442 (526)
                      .....+.+|+.|.+.+|........    . .. .|+++..+.+.+|+.+.+..   ...-.++|+.|++..|..+++++
T Consensus       711 ~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~---~~~f~~~L~~l~l~~~~~~e~~i  787 (889)
T KOG4658|consen  711 SSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLT---WLLFAPHLTSLSLVSCRLLEDII  787 (889)
T ss_pred             cccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccc---hhhccCcccEEEEecccccccCC
Confidence            3455678899999998876532211    1 11 26677778888887777765   23344899999999999888876


Q ss_pred             ccccCCcccccCCCeeeeCccCeE-ecCCCccccccCCCCccccCCCccEEeEecCCCccccCCC
Q 039042          443 LADDDDDHDAAKDEVIAFSELNEL-KLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRG  506 (526)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~  506 (526)
                      ..........  ..+..|.++..+ .+.+.+.++.+...+  ..++.|+.+.+..||++.++|..
T Consensus       788 ~~~k~~~~l~--~~i~~f~~~~~l~~~~~l~~l~~i~~~~--l~~~~l~~~~ve~~p~l~~~P~~  848 (889)
T KOG4658|consen  788 PKLKALLELK--ELILPFNKLEGLRMLCSLGGLPQLYWLP--LSFLKLEELIVEECPKLGKLPLL  848 (889)
T ss_pred             CHHHHhhhcc--cEEecccccccceeeecCCCCceeEecc--cCccchhheehhcCcccccCccc
Confidence            6544322111  134566777777 466656665555442  23566999999999999888864

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.98  E-value=1.5e-11  Score=102.95  Aligned_cols=130  Identities=18%  Similarity=0.191  Sum_probs=65.8

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeecccccc-EEEeecc
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLE-ELIVVDN  205 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~-~l~~~~~  205 (526)
                      +.+|++|++.+|.++++    |.+ ++.++.|+.|++.-+ ++.. .|..++   .++.|+.|+++++..-+ .+|..+ 
T Consensus        55 l~nlevln~~nnqie~l----p~~-issl~klr~lnvgmn-rl~~-lprgfg---s~p~levldltynnl~e~~lpgnf-  123 (264)
T KOG0617|consen   55 LKNLEVLNLSNNQIEEL----PTS-ISSLPKLRILNVGMN-RLNI-LPRGFG---SFPALEVLDLTYNNLNENSLPGNF-  123 (264)
T ss_pred             hhhhhhhhcccchhhhc----Chh-hhhchhhhheecchh-hhhc-CccccC---CCchhhhhhccccccccccCCcch-
Confidence            45555556665555555    333 445566666665543 2222 354433   56666666666552211 222222 


Q ss_pred             hhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeec
Q 039042          206 QEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAE  285 (526)
Q Consensus       206 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  285 (526)
                               ..+..|+.|++++ +.++.+|..   ++.+++|+.|.++++ .+-.+|.++      ..+++|+.|+|.++
T Consensus       124 ---------f~m~tlralyl~d-ndfe~lp~d---vg~lt~lqil~lrdn-dll~lpkei------g~lt~lrelhiqgn  183 (264)
T KOG0617|consen  124 ---------FYMTTLRALYLGD-NDFEILPPD---VGKLTNLQILSLRDN-DLLSLPKEI------GDLTRLRELHIQGN  183 (264)
T ss_pred             ---------hHHHHHHHHHhcC-CCcccCChh---hhhhcceeEEeeccC-chhhCcHHH------HHHHHHHHHhcccc
Confidence                     1244555556655 344555555   556666666666655 344455554      24556666666655


Q ss_pred             cc
Q 039042          286 YI  287 (526)
Q Consensus       286 ~~  287 (526)
                      .+
T Consensus       184 rl  185 (264)
T KOG0617|consen  184 RL  185 (264)
T ss_pred             ee
Confidence            33

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.89  E-value=6.5e-11  Score=99.15  Aligned_cols=149  Identities=17%  Similarity=0.239  Sum_probs=103.2

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      +++...|.++.|.++.+    |.. |..+.+|+.|++++++ ++.+ |.+++   ++++|+.|++.-+ .+..+|..+  
T Consensus        32 ~s~ITrLtLSHNKl~~v----ppn-ia~l~nlevln~~nnq-ie~l-p~~is---sl~klr~lnvgmn-rl~~lprgf--   98 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVV----PPN-IAELKNLEVLNLSNNQ-IEEL-PTSIS---SLPKLRILNVGMN-RLNILPRGF--   98 (264)
T ss_pred             hhhhhhhhcccCceeec----CCc-HHHhhhhhhhhcccch-hhhc-Chhhh---hchhhhheecchh-hhhcCcccc--
Confidence            77888888888887766    433 6678888888888854 5555 55655   7888888888765 677777776  


Q ss_pred             hhhcccccccccccceeecccCccccc--cccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEee
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTS--FCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDA  284 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~  284 (526)
                              +.||.|+.|+++++ ++.+  +|..   +..++.|+-|.++++ .++.+|++.      ..+++|+-|.+.+
T Consensus        99 --------gs~p~levldltyn-nl~e~~lpgn---ff~m~tlralyl~dn-dfe~lp~dv------g~lt~lqil~lrd  159 (264)
T KOG0617|consen   99 --------GSFPALEVLDLTYN-NLNENSLPGN---FFYMTTLRALYLGDN-DFEILPPDV------GKLTNLQILSLRD  159 (264)
T ss_pred             --------CCCchhhhhhcccc-ccccccCCcc---hhHHHHHHHHHhcCC-CcccCChhh------hhhcceeEEeecc
Confidence                    77888888888874 3333  4444   666777788888877 677777776      4577888877776


Q ss_pred             ccccccceeccc--cccccccEEEeeeCC
Q 039042          285 EYIITNKFIFSE--DLLCKLKCLDVEFVD  311 (526)
Q Consensus       285 ~~~~~~~~~~~~--~~~~~L~~L~l~~~~  311 (526)
                      +.+.    .+|.  +.+..|++|++.+++
T Consensus       160 ndll----~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  160 NDLL----SLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             Cchh----hCcHHHHHHHHHHHHhcccce
Confidence            6442    2332  245566666666543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.82  E-value=1.4e-09  Score=118.25  Aligned_cols=118  Identities=25%  Similarity=0.354  Sum_probs=56.8

Q ss_pred             CcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceec-ccccCCccccc
Q 039042          375 NNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIV-LADDDDDHDAA  453 (526)
Q Consensus       375 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~-~~~~~~~~~~~  453 (526)
                      +++..+.+.+|...... ....-+++|+.|++..|+.+++..+  ....+..++.+.+.. ..+.... ....+.-.+. 
T Consensus       747 ~~l~~~~~~~~~~~r~l-~~~~f~~~L~~l~l~~~~~~e~~i~--~~k~~~~l~~~i~~f-~~~~~l~~~~~l~~l~~i-  821 (889)
T KOG4658|consen  747 PNLSKVSILNCHMLRDL-TWLLFAPHLTSLSLVSCRLLEDIIP--KLKALLELKELILPF-NKLEGLRMLCSLGGLPQL-  821 (889)
T ss_pred             HHHHHHHhhcccccccc-chhhccCcccEEEEecccccccCCC--HHHHhhhcccEEecc-cccccceeeecCCCCcee-
Confidence            35555555666555443 2233567888888888877776542  223333333322211 1122110 1000000000 


Q ss_pred             CCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecC-CCccccCCC
Q 039042          454 KDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDC-TNMKGFSRG  506 (526)
Q Consensus       454 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C-~~l~~l~~~  506 (526)
                      ...-..++.|+.+.+..|++++.         +|.+.++.+.+| ..+...|.+
T Consensus       822 ~~~~l~~~~l~~~~ve~~p~l~~---------~P~~~~~~i~~~~~~~~~~~~~  866 (889)
T KOG4658|consen  822 YWLPLSFLKLEELIVEECPKLGK---------LPLLSTLTIVGCEEKLKEYPDG  866 (889)
T ss_pred             EecccCccchhheehhcCccccc---------CccccccceeccccceeecCCc
Confidence            00001233455555555554444         566778888887 777777765

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.80  E-value=4e-10  Score=106.45  Aligned_cols=130  Identities=12%  Similarity=0.108  Sum_probs=89.6

Q ss_pred             eecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhcccccccchhhhhhhh
Q 039042           54 ELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANISNTLFLEKLE  131 (526)
Q Consensus        54 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~~L~  131 (526)
                      ..++|.-+.++.+|.. ..+.+.+||.|+|+.|....+-+..|+++++|-.  +.+.++++.++...     ++.+..|+
T Consensus        70 veirLdqN~I~~iP~~-aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~-----F~gL~slq  143 (498)
T KOG4237|consen   70 VEIRLDQNQISSIPPG-AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA-----FGGLSSLQ  143 (498)
T ss_pred             eEEEeccCCcccCChh-hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH-----hhhHHHHH
Confidence            4456666678888765 4567889999999999888884455888888888  66667777776532     22378888


Q ss_pred             hhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccc
Q 039042          132 KLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVL  197 (526)
Q Consensus       132 ~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l  197 (526)
                      .|.+.-|.+..+-...    +-.+++|..|.+.++. ++.+ +....  ..+.+++.+++..++.+
T Consensus       144 rLllNan~i~Cir~~a----l~dL~~l~lLslyDn~-~q~i-~~~tf--~~l~~i~tlhlA~np~i  201 (498)
T KOG4237|consen  144 RLLLNANHINCIRQDA----LRDLPSLSLLSLYDNK-IQSI-CKGTF--QGLAAIKTLHLAQNPFI  201 (498)
T ss_pred             HHhcChhhhcchhHHH----HHHhhhcchhcccchh-hhhh-ccccc--cchhccchHhhhcCccc
Confidence            8888888776553332    3358888888888854 3332 44332  27888888888877533

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.70  E-value=1.3e-09  Score=107.22  Aligned_cols=37  Identities=14%  Similarity=0.109  Sum_probs=17.6

Q ss_pred             CCcCEEEEccCCCccccc---chHHHhhcccccEEEEcccc
Q 039042          399 QNLTSLEISYCNGLKNVL---TFSIAKTLVRLREMKIESCA  436 (526)
Q Consensus       399 ~~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~i~~c~  436 (526)
                      +.|++|++.+| .+++..   .......+++|+.++++++.
T Consensus       250 ~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~  289 (319)
T cd00116         250 ISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNK  289 (319)
T ss_pred             CCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence            45666666655 333111   11223334566666666643

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.63  E-value=5.5e-09  Score=102.76  Aligned_cols=61  Identities=18%  Similarity=0.213  Sum_probs=30.0

Q ss_pred             CcccEEEEeccCCc----ccccCCCccCCCcCEEEEccCCCcccccchHHHhh----cccccEEEEcccc
Q 039042          375 NNLVILHVTNCHRL----INLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKT----LVRLREMKIESCA  436 (526)
Q Consensus       375 ~~L~~L~l~~c~~l----~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~----l~~L~~L~i~~c~  436 (526)
                      ++|+.|++++|..-    ..+...+..+++|++|++++| .+.+.........    .+.|++|++.+|.
T Consensus       193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~  261 (319)
T cd00116         193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCND  261 (319)
T ss_pred             CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence            46666666665321    112222334566777777665 3443222222222    2567777776654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=1e-08  Score=98.36  Aligned_cols=161  Identities=17%  Similarity=0.143  Sum_probs=70.5

Q ss_pred             ccCCcccEEEEecCCCCCCch-hhhhhccCccc--ccccccchhhhcccccccchhhhhhhhhhcccccccccccccccc
Q 039042           73 VGSSQLKFLGIHGCRDALNPS-AESKRQRQEES--ANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVA  149 (526)
Q Consensus        73 ~~l~~L~~L~L~~c~~~~~p~-~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~  149 (526)
                      ..+.+||...|.+|.....+. .+...|++++.  ++.. .+-.+..   .......+++|+.|+++.|.+...|...-.
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~---v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~  193 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFP---VLKIAEQLPSLENLNLSSNRLSNFISSNTT  193 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHH---HHHHHHhcccchhcccccccccCCccccch
Confidence            457888888888876544432 34445554444  2111 0000000   000111255666666666655544433332


Q ss_pred             cccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCc
Q 039042          150 AMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLE  229 (526)
Q Consensus       150 ~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  229 (526)
                      .   .+++|+.|.|.+|..- .---.++..  .+|+|+.|++..|..+..-....          ..+..|+.|+++++ 
T Consensus       194 ~---~l~~lK~L~l~~CGls-~k~V~~~~~--~fPsl~~L~L~~N~~~~~~~~~~----------~i~~~L~~LdLs~N-  256 (505)
T KOG3207|consen  194 L---LLSHLKQLVLNSCGLS-WKDVQWILL--TFPSLEVLYLEANEIILIKATST----------KILQTLQELDLSNN-  256 (505)
T ss_pred             h---hhhhhheEEeccCCCC-HHHHHHHHH--hCCcHHHhhhhcccccceecchh----------hhhhHHhhccccCC-
Confidence            2   4555666666655321 100112222  45555555555553111111110          23445555555552 


Q ss_pred             cccccccCcccccCCCCccEEEeccC
Q 039042          230 KLTSFCTGDVHMLEFPSLKELWISRC  255 (526)
Q Consensus       230 ~l~~~~~~~~~~~~l~~L~~L~l~~c  255 (526)
                      .+.+++.. ...+.+|.|+.|.++.|
T Consensus       257 ~li~~~~~-~~~~~l~~L~~Lnls~t  281 (505)
T KOG3207|consen  257 NLIDFDQG-YKVGTLPGLNQLNLSST  281 (505)
T ss_pred             cccccccc-cccccccchhhhhcccc
Confidence            33333322 12445555555555554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=7e-09  Score=99.52  Aligned_cols=186  Identities=17%  Similarity=0.154  Sum_probs=101.8

Q ss_pred             hhhhhhhhccccccccccccc-ccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeec
Q 039042          126 FLEKLEKLELRSINIERIWRN-QVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVD  204 (526)
Q Consensus       126 ~l~~L~~L~L~~~~l~~~~~~-~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~  204 (526)
                      .+++++.|+|+.|=+..+... ..   ...+|+|+.|+|+.|...-  +.+..- -..+++|+.|.+++| ++..-    
T Consensus       144 ~~~~v~~LdLS~NL~~nw~~v~~i---~eqLp~Le~LNls~Nrl~~--~~~s~~-~~~l~~lK~L~l~~C-Gls~k----  212 (505)
T KOG3207|consen  144 ILPNVRDLDLSRNLFHNWFPVLKI---AEQLPSLENLNLSSNRLSN--FISSNT-TLLLSHLKQLVLNSC-GLSWK----  212 (505)
T ss_pred             hCCcceeecchhhhHHhHHHHHHH---HHhcccchhcccccccccC--Cccccc-hhhhhhhheEEeccC-CCCHH----
Confidence            377888888888733321110 01   2367888888888764322  112111 125677888888887 33311    


Q ss_pred             chhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEee
Q 039042          205 NQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDA  284 (526)
Q Consensus       205 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~  284 (526)
                          .+...+..||+|+.|++..+..+....   +....+..|++|+|+++ ++..++.....    ..++.|+.|+++.
T Consensus       213 ----~V~~~~~~fPsl~~L~L~~N~~~~~~~---~~~~i~~~L~~LdLs~N-~li~~~~~~~~----~~l~~L~~Lnls~  280 (505)
T KOG3207|consen  213 ----DVQWILLTFPSLEVLYLEANEIILIKA---TSTKILQTLQELDLSNN-NLIDFDQGYKV----GTLPGLNQLNLSS  280 (505)
T ss_pred             ----HHHHHHHhCCcHHHhhhhcccccceec---chhhhhhHHhhccccCC-ccccccccccc----ccccchhhhhccc
Confidence                111112467888888887653221111   11335677888888877 44445433322    4678888888876


Q ss_pred             ccccccceeccc------cccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec
Q 039042          285 EYIITNKFIFSE------DLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY  337 (526)
Q Consensus       285 ~~~~~~~~~~~~------~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~  337 (526)
                      +.+ +++...+.      ..+++|++|.+..++...  .-....+..+++|+.|.+.|+
T Consensus       281 tgi-~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~--w~sl~~l~~l~nlk~l~~~~n  336 (505)
T KOG3207|consen  281 TGI-ASIAEPDVESLDKTHTFPKLEYLNISENNIRD--WRSLNHLRTLENLKHLRITLN  336 (505)
T ss_pred             cCc-chhcCCCccchhhhcccccceeeecccCcccc--ccccchhhccchhhhhhcccc
Confidence            655 23333333      366788888887765422  111223445566666665543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.26  E-value=4.6e-07  Score=79.24  Aligned_cols=82  Identities=18%  Similarity=0.330  Sum_probs=17.5

Q ss_pred             cCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccc
Q 039042          154 GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTS  233 (526)
Q Consensus       154 ~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~  233 (526)
                      +...++.|+|+++. ++.+  ..++.  .+.+|+.|++++| .+..+..           +..++.|++|++++ +.++.
T Consensus        17 n~~~~~~L~L~~n~-I~~I--e~L~~--~l~~L~~L~Ls~N-~I~~l~~-----------l~~L~~L~~L~L~~-N~I~~   78 (175)
T PF14580_consen   17 NPVKLRELNLRGNQ-ISTI--ENLGA--TLDKLEVLDLSNN-QITKLEG-----------LPGLPRLKTLDLSN-NRISS   78 (175)
T ss_dssp             ----------------------S--T--T-TT--EEE-TTS---S--TT---------------TT--EEE--S-S---S
T ss_pred             cccccccccccccc-cccc--cchhh--hhcCCCEEECCCC-CCccccC-----------ccChhhhhhcccCC-CCCCc
Confidence            44456666666653 2222  22221  3566666666666 4544421           13456666666654 34444


Q ss_pred             cccCcccccCCCCccEEEeccC
Q 039042          234 FCTGDVHMLEFPSLKELWISRC  255 (526)
Q Consensus       234 ~~~~~~~~~~l~~L~~L~l~~c  255 (526)
                      +...  ....+|+|++|.++++
T Consensus        79 i~~~--l~~~lp~L~~L~L~~N   98 (175)
T PF14580_consen   79 ISEG--LDKNLPNLQELYLSNN   98 (175)
T ss_dssp             -CHH--HHHH-TT--EEE-TTS
T ss_pred             cccc--hHHhCCcCCEEECcCC
Confidence            4221  0123555666655554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=3.8e-08  Score=89.99  Aligned_cols=59  Identities=20%  Similarity=0.201  Sum_probs=30.3

Q ss_pred             cccCCcceEEEeeccccccceec-cccccccccEEEeeeCCcccccccchh--HhhcCCCccEEEEe
Q 039042          272 KVFPNLEELIVDAEYIITNKFIF-SEDLLCKLKCLDVEFVDELTTILSLDD--FLQRFPTLKVLQIE  335 (526)
Q Consensus       272 ~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~--~l~~l~~L~~L~l~  335 (526)
                      ..+|+|.+|+++++....+ +.+ ....++.|++|.+++|..+.    |..  .+.+.|+|.+|++.
T Consensus       310 ~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~----p~~~~~l~s~psl~yLdv~  371 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDII----PETLLELNSKPSLVYLDVF  371 (419)
T ss_pred             HhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCCC----hHHeeeeccCcceEEEEec
Confidence            4556666666663322111 111 11245667777777776554    222  23456777777776

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=3.6e-08  Score=90.16  Aligned_cols=136  Identities=16%  Similarity=0.098  Sum_probs=71.1

Q ss_pred             ccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc--ccccceec
Q 039042          217 FPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY--IITNKFIF  294 (526)
Q Consensus       217 l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~  294 (526)
                      -.+|+.|+++.|..+++.... ..+.+|+.|.+|+++.|.-.+......+.    ..-++|..|+++|+.  +..+.-..
T Consensus       233 N~~L~~lnlsm~sG~t~n~~~-ll~~scs~L~~LNlsWc~l~~~~Vtv~V~----hise~l~~LNlsG~rrnl~~sh~~t  307 (419)
T KOG2120|consen  233 NSNLVRLNLSMCSGFTENALQ-LLLSSCSRLDELNLSWCFLFTEKVTVAVA----HISETLTQLNLSGYRRNLQKSHLST  307 (419)
T ss_pred             cccceeeccccccccchhHHH-HHHHhhhhHhhcCchHhhccchhhhHHHh----hhchhhhhhhhhhhHhhhhhhHHHH
Confidence            344555555555444443222 22445666666666666433322222111    234566667776431  11110111


Q ss_pred             cccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec
Q 039042          295 SEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC  360 (526)
Q Consensus       295 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~  360 (526)
                      -...+|+|.+|++++|..++  .-....+-.++.|++|.++ |. .+.|...+.....|+|.+|++.
T Consensus       308 L~~rcp~l~~LDLSD~v~l~--~~~~~~~~kf~~L~~lSlsRCY-~i~p~~~~~l~s~psl~yLdv~  371 (419)
T KOG2120|consen  308 LVRRCPNLVHLDLSDSVMLK--NDCFQEFFKFNYLQHLSLSRCY-DIIPETLLELNSKPSLVYLDVF  371 (419)
T ss_pred             HHHhCCceeeeccccccccC--chHHHHHHhcchheeeehhhhc-CCChHHeeeeccCcceEEEEec
Confidence            22368889999999888877  2233355578888888888 65 0111111112445788888876

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.12  E-value=2e-06  Score=75.26  Aligned_cols=106  Identities=22%  Similarity=0.245  Sum_probs=37.3

Q ss_pred             hhhhhhhcccccccccccccccccccc-cCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecc
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTC-GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDN  205 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~-~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~  205 (526)
                      ..+++.|+|.+|.|+.+-.      ++ .+.+|+.|++++|. ++.+ + .   +..+++|++|++++| .+..+.....
T Consensus        18 ~~~~~~L~L~~n~I~~Ie~------L~~~l~~L~~L~Ls~N~-I~~l-~-~---l~~L~~L~~L~L~~N-~I~~i~~~l~   84 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIEN------LGATLDKLEVLDLSNNQ-ITKL-E-G---LPGLPRLKTLDLSNN-RISSISEGLD   84 (175)
T ss_dssp             ------------------S--------TT-TT--EEE-TTS---S---T-T-------TT--EEE--SS----S-CHHHH
T ss_pred             ccccccccccccccccccc------hhhhhcCCCEEECCCCC-Cccc-c-C---ccChhhhhhcccCCC-CCCccccchH
Confidence            5678999999998876522      22 57899999999974 5544 2 3   337999999999998 6776643210


Q ss_pred             hhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCC
Q 039042          206 QEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCP  256 (526)
Q Consensus       206 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~  256 (526)
                               ..+|+|++|++++ +.+.++... ..+..+|+|++|++.++|
T Consensus        85 ---------~~lp~L~~L~L~~-N~I~~l~~l-~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   85 ---------KNLPNLQELYLSN-NKISDLNEL-EPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             ---------HH-TT--EEE-TT-S---SCCCC-GGGGG-TT--EEE-TT-G
T ss_pred             ---------HhCCcCCEEECcC-CcCCChHHh-HHHHcCCCcceeeccCCc
Confidence                     2589999999987 466665443 346678888888888775

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.08  E-value=7.4e-07  Score=88.62  Aligned_cols=192  Identities=17%  Similarity=0.095  Sum_probs=127.4

Q ss_pred             ecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc-ccccccchhhhcccccccchhhhhhhhhh
Q 039042           55 LHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES-ANDMQSNELILEDNANISNTLFLEKLEKL  133 (526)
Q Consensus        55 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~-i~~~~~l~~~~~~~~~~~~~~~l~~L~~L  133 (526)
                      .+.|++...+.||..-....+.--...+++.+++...|.. +..+..|+. +.+-+-+..++..      +..+..|.+|
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n~~r~ip~~------i~~L~~lt~l  126 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEE-ACAFVSLESLILYHNCIRTIPEA------ICNLEALTFL  126 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhccccccccCchH-HHHHHHHHHHHHHhccceecchh------hhhhhHHHHh
Confidence            3445555556666543345667777888999888877664 345555555 4443444444432      2238889999


Q ss_pred             cccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccc
Q 039042          134 ELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNN  213 (526)
Q Consensus       134 ~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~  213 (526)
                      +|+.|.+..+    |.. ++.++ |+.|.++++ +++.+ |..++   .++.|..|+.+.| .+..++...         
T Consensus       127 ~ls~NqlS~l----p~~-lC~lp-Lkvli~sNN-kl~~l-p~~ig---~~~tl~~ld~s~n-ei~slpsql---------  185 (722)
T KOG0532|consen  127 DLSSNQLSHL----PDG-LCDLP-LKVLIVSNN-KLTSL-PEEIG---LLPTLAHLDVSKN-EIQSLPSQL---------  185 (722)
T ss_pred             hhccchhhcC----Chh-hhcCc-ceeEEEecC-ccccC-Ccccc---cchhHHHhhhhhh-hhhhchHHh---------
Confidence            9999977755    444 55566 888888885 45554 65555   7888999999888 677776654         


Q ss_pred             cccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccc
Q 039042          214 IVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYI  287 (526)
Q Consensus       214 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  287 (526)
                       +.+.+|+.|.+.+ +.+..+|..   +. .=.|..|+++.+ ++..+|.++      ..+..|+.|.+.+|-+
T Consensus       186 -~~l~slr~l~vrR-n~l~~lp~E---l~-~LpLi~lDfScN-kis~iPv~f------r~m~~Lq~l~LenNPL  246 (722)
T KOG0532|consen  186 -GYLTSLRDLNVRR-NHLEDLPEE---LC-SLPLIRLDFSCN-KISYLPVDF------RKMRHLQVLQLENNPL  246 (722)
T ss_pred             -hhHHHHHHHHHhh-hhhhhCCHH---Hh-CCceeeeecccC-ceeecchhh------hhhhhheeeeeccCCC
Confidence             5677788888776 456666666   33 334667777755 777777776      5677788887776643

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.90  E-value=4e-07  Score=90.48  Aligned_cols=147  Identities=21%  Similarity=0.191  Sum_probs=67.2

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      +..|+.+.+..|.+-.+    |.. ++++..|.+|+++.+. +.. .|..+.   .|+ |+.|-+++| ++..+|..+  
T Consensus        97 f~~Le~liLy~n~~r~i----p~~-i~~L~~lt~l~ls~Nq-lS~-lp~~lC---~lp-Lkvli~sNN-kl~~lp~~i--  162 (722)
T KOG0532|consen   97 FVSLESLILYHNCIRTI----PEA-ICNLEALTFLDLSSNQ-LSH-LPDGLC---DLP-LKVLIVSNN-KLTSLPEEI--  162 (722)
T ss_pred             HHHHHHHHHHhccceec----chh-hhhhhHHHHhhhccch-hhc-CChhhh---cCc-ceeEEEecC-ccccCCccc--
Confidence            44555555555533322    222 4455555555555532 222 243333   222 555555554 444444433  


Q ss_pred             hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY  286 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  286 (526)
                              +..+.|..|+.+.| .+..++..   ++.+.+|+.|.+..+ ++..+|.+.       ..-.|..||+++|+
T Consensus       163 --------g~~~tl~~ld~s~n-ei~slpsq---l~~l~slr~l~vrRn-~l~~lp~El-------~~LpLi~lDfScNk  222 (722)
T KOG0532|consen  163 --------GLLPTLAHLDVSKN-EIQSLPSQ---LGYLTSLRDLNVRRN-HLEDLPEEL-------CSLPLIRLDFSCNK  222 (722)
T ss_pred             --------ccchhHHHhhhhhh-hhhhchHH---hhhHHHHHHHHHhhh-hhhhCCHHH-------hCCceeeeecccCc
Confidence                    44555555555542 34444444   445555555555554 444444442       12334555555444


Q ss_pred             ccccceecccc--ccccccEEEeeeCC
Q 039042          287 IITNKFIFSED--LLCKLKCLDVEFVD  311 (526)
Q Consensus       287 ~~~~~~~~~~~--~~~~L~~L~l~~~~  311 (526)
                      +    ..+|..  .+..|++|.+.+++
T Consensus       223 i----s~iPv~fr~m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  223 I----SYLPVDFRKMRHLQVLQLENNP  245 (722)
T ss_pred             e----eecchhhhhhhhheeeeeccCC
Confidence            3    223322  33445555554444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.83  E-value=7.6e-05  Score=73.59  Aligned_cols=135  Identities=19%  Similarity=0.160  Sum_probs=75.4

Q ss_pred             hhcCCCccEEEEe-eccccccCCCcCccccccceEEEec--cCceeeccccccccCcccEEEEeccCCcccccCCCccCC
Q 039042          323 LQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC--YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQ  399 (526)
Q Consensus       323 l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~--~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~  399 (526)
                      +..+++++.|+++ |....+|      ...++|++|.+.  ..+..++. .+  .++|+.|++++|..+..+|      .
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP------~LP~sLtsL~Lsnc~nLtsLP~-~L--P~nLe~L~Ls~Cs~L~sLP------~  112 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLP------VLPNELTEITIENCNNLTTLPG-SI--PEGLEKLTVCHCPEISGLP------E  112 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccC------CCCCCCcEEEccCCCCcccCCc-hh--hhhhhheEccCcccccccc------c
Confidence            4456888888888 5555554      223567777776  55555532 22  3577777777776665554      3


Q ss_pred             CcCEEEEcc--CCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCcccccc
Q 039042          400 NLTSLEISY--CNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSF  477 (526)
Q Consensus       400 ~L~~L~l~~--c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l  477 (526)
                      +|+.|++.+  |..+..+|        ++|+.|.+.+..........            ...+++|++|.+.+|..+. +
T Consensus       113 sLe~L~L~~n~~~~L~~LP--------ssLk~L~I~~~n~~~~~~lp------------~~LPsSLk~L~Is~c~~i~-L  171 (426)
T PRK15386        113 SVRSLEIKGSATDSIKNVP--------NGLTSLSINSYNPENQARID------------NLISPSLKTLSLTGCSNII-L  171 (426)
T ss_pred             ccceEEeCCCCCcccccCc--------chHhheeccccccccccccc------------cccCCcccEEEecCCCccc-C
Confidence            466666653  22233333        45666666442211100000            0134688999998887553 3


Q ss_pred             CCCCccccCCCccEEeEecC
Q 039042          478 YSGNRALNFPSLERLLVDDC  497 (526)
Q Consensus       478 ~~~~~~~~~~~L~~L~l~~C  497 (526)
                      |..  +  -.+|+.|.++.+
T Consensus       172 P~~--L--P~SLk~L~ls~n  187 (426)
T PRK15386        172 PEK--L--PESLQSITLHIE  187 (426)
T ss_pred             ccc--c--cccCcEEEeccc
Confidence            322  1  267888888764

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.82  E-value=3.2e-05  Score=55.15  Aligned_cols=37  Identities=27%  Similarity=0.406  Sum_probs=16.6

Q ss_pred             cccccceeecccCccccccccCcccccCCCCccEEEeccC
Q 039042          216 MFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRC  255 (526)
Q Consensus       216 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c  255 (526)
                      .+++|++|++++ +.++.++...  +..+++|++|++++|
T Consensus        23 ~l~~L~~L~l~~-N~l~~i~~~~--f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen   23 NLPNLETLDLSN-NNLTSIPPDA--FSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TGTTESEEEETS-SSESEEETTT--TTTSTTESEEEETSS
T ss_pred             CCCCCCEeEccC-CccCccCHHH--HcCCCCCCEEeCcCC
Confidence            445555555543 2344443332  444444555544444

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.79  E-value=7.2e-06  Score=75.40  Aligned_cols=125  Identities=16%  Similarity=0.225  Sum_probs=75.3

Q ss_pred             CCccEEEEeec-cccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEE
Q 039042          327 PTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSL  404 (526)
Q Consensus       327 ~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L  404 (526)
                      +.|+.++++.+ ...+....   ...|.++.|+++ +.+..+.  .+..+++|+.|+++++. +..+..+...+.+.+.|
T Consensus       284 q~LtelDLS~N~I~~iDESv---KL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESV---KLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTL  357 (490)
T ss_pred             hhhhhccccccchhhhhhhh---hhccceeEEeccccceeeeh--hhhhcccceEeecccch-hHhhhhhHhhhcCEeee
Confidence            45566666533 22222111   455777778777 7777763  36677888888888763 33332333456667777


Q ss_pred             EEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCc
Q 039042          405 EISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLK  472 (526)
Q Consensus       405 ~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  472 (526)
                      .+.+. .++++   +.++.+-+|..|++++ ++++++-.-          ..++.+|.|+++.+.+.+
T Consensus       358 ~La~N-~iE~L---SGL~KLYSLvnLDl~~-N~Ie~ldeV----------~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  358 KLAQN-KIETL---SGLRKLYSLVNLDLSS-NQIEELDEV----------NHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             ehhhh-hHhhh---hhhHhhhhheeccccc-cchhhHHHh----------cccccccHHHHHhhcCCC
Confidence            77764 45544   3666777888888877 345444222          235577888888777754

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.77  E-value=7.4e-06  Score=75.36  Aligned_cols=131  Identities=15%  Similarity=0.160  Sum_probs=79.1

Q ss_pred             ccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEE
Q 039042          352 VIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREM  430 (526)
Q Consensus       352 ~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L  430 (526)
                      ..|++++++ +.+..+ +++..-+|.++.|+++.+... .+ ..+..+++|+.|++++. .+....  .+-..+-+.+.|
T Consensus       284 q~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N-~Ls~~~--Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  284 QELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGN-LLAECV--GWHLKLGNIKTL  357 (490)
T ss_pred             hhhhhccccccchhhh-hhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccc-hhHhhh--hhHhhhcCEeee
Confidence            356666666 555555 344455667777777665322 22 22455667777777664 333332  233345566666


Q ss_pred             EEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCccccC
Q 039042          431 KIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFS  504 (526)
Q Consensus       431 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~  504 (526)
                      .+.+ +.++++.             +++.+.+|..|++++ ++++.+.....++.+|+|+.+.+.+.| +..++
T Consensus       358 ~La~-N~iE~LS-------------GL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~v  415 (490)
T KOG1259|consen  358 KLAQ-NKIETLS-------------GLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP-LAGSV  415 (490)
T ss_pred             ehhh-hhHhhhh-------------hhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCC-ccccc
Confidence            6666 3344442             245678899999987 566666555557789999999998865 44433

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.68  E-value=2.8e-06  Score=79.81  Aligned_cols=177  Identities=16%  Similarity=0.091  Sum_probs=77.9

Q ss_pred             hhhhhhhcccccccccccccc---------cccccccCCcccEEEeccCCCceecCCccccc-ccccccccEEeeecccc
Q 039042          127 LEKLEKLELRSINIERIWRNQ---------VAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVS-NNSFVRLQYIRIEKCHV  196 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~---------~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~-l~~l~~L~~L~l~~~~~  196 (526)
                      +..|+.|.|.+|++.+.-.+.         ...-+..-++|+++...+| ++.+-....++. ++..+.|+++.+..| .
T Consensus       119 ~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~leevr~~qN-~  196 (382)
T KOG1909|consen  119 CTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHPTLEEVRLSQN-G  196 (382)
T ss_pred             ccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhccccceEEEecc-c
Confidence            556666667666554321110         0000224566777766664 332211111110 224566777776665 2


Q ss_pred             ccEEEeecchhhhcccccccccccceeecccCcccccc--ccCcccccCCCCccEEEeccCCCceeccccccCCcccccc
Q 039042          197 LEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSF--CTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVF  274 (526)
Q Consensus       197 l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l  274 (526)
                      |..-...     -....+..+++|++|++.++..-..-  ..+ ..+..+++|++|.+.+| .++.--...+.+.+....
T Consensus       197 I~~eG~~-----al~eal~~~~~LevLdl~DNtft~egs~~La-kaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~  269 (382)
T KOG1909|consen  197 IRPEGVT-----ALAEALEHCPHLEVLDLRDNTFTLEGSVALA-KALSSWPHLRELNLGDC-LLENEGAIAFVDALKESA  269 (382)
T ss_pred             ccCchhH-----HHHHHHHhCCcceeeecccchhhhHHHHHHH-HHhcccchheeeccccc-ccccccHHHHHHHHhccC
Confidence            2211100     00011245677777777764321110  000 11445677777777777 333211111111122346


Q ss_pred             CCcceEEEeeccccccc---eeccccccccccEEEeeeCCc
Q 039042          275 PNLEELIVDAEYIITNK---FIFSEDLLCKLKCLDVEFVDE  312 (526)
Q Consensus       275 ~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~  312 (526)
                      |+|+.|.+.+|.+...-   -..+....+.|+.|.++.|+.
T Consensus       270 p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  270 PSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             CCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            67777777766553210   001122345566666665554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.66  E-value=0.00011  Score=52.41  Aligned_cols=56  Identities=23%  Similarity=0.249  Sum_probs=27.3

Q ss_pred             cceEEEec-cCceeeccccccccCcccEEEEeccCCcccccC-CCccCCCcCEEEEccC
Q 039042          353 IIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVP-SSTSFQNLTSLEISYC  409 (526)
Q Consensus       353 ~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c  409 (526)
                      +|++|++. +.+..++++.+..+++|++|+++++ .+..+++ .+..+++|++|+++++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence            45555555 5555555555555555555555533 2233322 2344455555555443

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.56  E-value=0.00019  Score=70.85  Aligned_cols=131  Identities=19%  Similarity=0.303  Sum_probs=80.5

Q ss_pred             cccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccE
Q 039042          351 EVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLRE  429 (526)
Q Consensus       351 ~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~  429 (526)
                      +.+++.|+++ ..+..++    .-.++|++|.+++|..+..+|..+  +++|+.|++++|.++..+|        ++|+.
T Consensus        51 ~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP--------~sLe~  116 (426)
T PRK15386         51 ARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP--------ESVRS  116 (426)
T ss_pred             hcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc--------cccce
Confidence            4667777777 6666664    123468888888877776665432  4577888888776666554        45677


Q ss_pred             EEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccc--cccCCCCccccC-CCccEEeEecCCCccccCCC
Q 039042          430 MKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSL--RSFYSGNRALNF-PSLERLLVDDCTNMKGFSRG  506 (526)
Q Consensus       430 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l--~~l~~~~~~~~~-~~L~~L~l~~C~~l~~l~~~  506 (526)
                      |++.. .....+..               .+++|+.|.+.+++..  ..++.     .+ ++|++|.+.+|..+ .+|.+
T Consensus       117 L~L~~-n~~~~L~~---------------LPssLk~L~I~~~n~~~~~~lp~-----~LPsSLk~L~Is~c~~i-~LP~~  174 (426)
T PRK15386        117 LEIKG-SATDSIKN---------------VPNGLTSLSINSYNPENQARIDN-----LISPSLKTLSLTGCSNI-ILPEK  174 (426)
T ss_pred             EEeCC-CCCccccc---------------CcchHhheecccccccccccccc-----ccCCcccEEEecCCCcc-cCccc
Confidence            77653 22222211               3467888887543321  11121     12 68999999999865 34543


Q ss_pred             CCCCcccceEEec
Q 039042          507 ELSTPVLHKVQLN  519 (526)
Q Consensus       507 ~~~~~~L~~l~l~  519 (526)
                      .  +.+|+.|+++
T Consensus       175 L--P~SLk~L~ls  185 (426)
T PRK15386        175 L--PESLQSITLH  185 (426)
T ss_pred             c--cccCcEEEec
Confidence            2  3688888876

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.52  E-value=6.5e-06  Score=85.84  Aligned_cols=141  Identities=15%  Similarity=0.116  Sum_probs=73.5

Q ss_pred             cCCcccEEEeccCCCceecCCcccccccccccccEEeeecc-ccccEEEeecchhhhcccccccccccceeecccCcccc
Q 039042          154 GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKC-HVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLT  232 (526)
Q Consensus       154 ~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~-~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~  232 (526)
                      .+++|+.|.+.+|..+....-..+..  ..++|++|++++| ......+.....      ....+++|+.|+++.+..++
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~------~~~~~~~L~~l~l~~~~~is  257 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALAL--KCPNLEELDLSGCCLLITLSPLLLLL------LLSICRKLKSLDLSGCGLVT  257 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHh--hCchhheecccCcccccccchhHhhh------hhhhcCCcCccchhhhhccC
Confidence            46777777777777665421112222  6777888887763 222221110000      01356777888887776555


Q ss_pred             ccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccc--cceeccccccccccEEEee
Q 039042          233 SFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIIT--NKFIFSEDLLCKLKCLDVE  308 (526)
Q Consensus       233 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~  308 (526)
                      +.... .....+++|++|.+.+|..++......    +...+++|++|+++.+...+  .+... ...+++|+.+.+.
T Consensus       258 d~~l~-~l~~~c~~L~~L~l~~c~~lt~~gl~~----i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  258 DIGLS-ALASRCPNLETLSLSNCSNLTDEGLVS----IAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLL  329 (482)
T ss_pred             chhHH-HHHhhCCCcceEccCCCCccchhHHHH----HHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhh
Confidence            43222 112237788888877776543322211    11567778888888553321  12222 2245665555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.47  E-value=1.5e-05  Score=85.05  Aligned_cols=109  Identities=23%  Similarity=0.271  Sum_probs=58.6

Q ss_pred             hhhhhhhccccc-ccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecc
Q 039042          127 LEKLEKLELRSI-NIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDN  205 (526)
Q Consensus       127 l~~L~~L~L~~~-~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~  205 (526)
                      -.+|++|++++. .+...|......   .+|+|++|.+.+-....+-+ ..+.+  .+++|+.||++++ ++..+..   
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~---~LPsL~sL~i~~~~~~~~dF-~~lc~--sFpNL~sLDIS~T-nI~nl~G---  190 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGT---MLPSLRSLVISGRQFDNDDF-SQLCA--SFPNLRSLDISGT-NISNLSG---  190 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhh---hCcccceEEecCceecchhH-HHHhh--ccCccceeecCCC-CccCcHH---
Confidence            567777888777 445555543322   56777777777633221100 11222  6777777777776 5555411   


Q ss_pred             hhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccC
Q 039042          206 QEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRC  255 (526)
Q Consensus       206 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c  255 (526)
                              ++.+++|+.|.+.+..- .....- ..+.++++|+.|+++.-
T Consensus       191 --------IS~LknLq~L~mrnLe~-e~~~~l-~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  191 --------ISRLKNLQVLSMRNLEF-ESYQDL-IDLFNLKKLRVLDISRD  230 (699)
T ss_pred             --------HhccccHHHHhccCCCC-CchhhH-HHHhcccCCCeeecccc
Confidence                    25667777776665422 211110 12556666666666654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.41  E-value=0.00014  Score=73.89  Aligned_cols=144  Identities=21%  Similarity=0.195  Sum_probs=65.7

Q ss_pred             ccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceecccc-
Q 039042          219 QLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSED-  297 (526)
Q Consensus       219 ~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-  297 (526)
                      +|++|++++ +.+..++..   +..+++|+.|.+++| ++..++...      ...++|+.|+++++.+    ..+|.. 
T Consensus       141 nL~~L~l~~-N~i~~l~~~---~~~l~~L~~L~l~~N-~l~~l~~~~------~~~~~L~~L~ls~N~i----~~l~~~~  205 (394)
T COG4886         141 NLKELDLSD-NKIESLPSP---LRNLPNLKNLDLSFN-DLSDLPKLL------SNLSNLNNLDLSGNKI----SDLPPEI  205 (394)
T ss_pred             hcccccccc-cchhhhhhh---hhccccccccccCCc-hhhhhhhhh------hhhhhhhheeccCCcc----ccCchhh
Confidence            555555554 344444322   445566666666555 444444332      1455566666665544    223332 


Q ss_pred             -ccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCceeecccccccc
Q 039042          298 -LLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIM  374 (526)
Q Consensus       298 -~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l  374 (526)
                       ....|+++.++++..+.   . ...+..+.++..+.+.+. ...++..   ...++++++|++. +.+..++.  +..+
T Consensus       206 ~~~~~L~~l~~~~N~~~~---~-~~~~~~~~~l~~l~l~~n~~~~~~~~---~~~l~~l~~L~~s~n~i~~i~~--~~~~  276 (394)
T COG4886         206 ELLSALEELDLSNNSIIE---L-LSSLSNLKNLSGLELSNNKLEDLPES---IGNLSNLETLDLSNNQISSISS--LGSL  276 (394)
T ss_pred             hhhhhhhhhhhcCCccee---c-chhhhhcccccccccCCceeeeccch---hccccccceecccccccccccc--cccc
Confidence             33346666666553322   1 113344444444443322 1111000   0333445555555 55555433  4445


Q ss_pred             CcccEEEEeccC
Q 039042          375 NNLVILHVTNCH  386 (526)
Q Consensus       375 ~~L~~L~l~~c~  386 (526)
                      .+++.|++++..
T Consensus       277 ~~l~~L~~s~n~  288 (394)
T COG4886         277 TNLRELDLSGNS  288 (394)
T ss_pred             CccCEEeccCcc
Confidence            566666665543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.31  E-value=0.00016  Score=73.26  Aligned_cols=176  Identities=18%  Similarity=0.139  Sum_probs=84.5

Q ss_pred             ccCCcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccccccchhhh-hhhhhhcccccccccccccccccc
Q 039042           73 VGSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFL-EKLEKLELRSINIERIWRNQVAAM  151 (526)
Q Consensus        73 ~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~l-~~L~~L~L~~~~l~~~~~~~~~~~  151 (526)
                      ..++.++.|++.++.....|... ..                            + ++|+.|++++|.+..+.    .. 
T Consensus       113 ~~~~~l~~L~l~~n~i~~i~~~~-~~----------------------------~~~nL~~L~l~~N~i~~l~----~~-  158 (394)
T COG4886         113 LELTNLTSLDLDNNNITDIPPLI-GL----------------------------LKSNLKELDLSDNKIESLP----SP-  158 (394)
T ss_pred             hcccceeEEecCCcccccCcccc-cc----------------------------chhhcccccccccchhhhh----hh-
Confidence            34578899999988877663311 11                            3 25666666666555431    11 


Q ss_pred             cccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccc
Q 039042          152 TCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKL  231 (526)
Q Consensus       152 ~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l  231 (526)
                      +..+++|+.|++++|+ +.++ |...+   ..++|+.|+++++ .+..++...          +....|++|.+++.. .
T Consensus       159 ~~~l~~L~~L~l~~N~-l~~l-~~~~~---~~~~L~~L~ls~N-~i~~l~~~~----------~~~~~L~~l~~~~N~-~  221 (394)
T COG4886         159 LRNLPNLKNLDLSFND-LSDL-PKLLS---NLSNLNNLDLSGN-KISDLPPEI----------ELLSALEELDLSNNS-I  221 (394)
T ss_pred             hhccccccccccCCch-hhhh-hhhhh---hhhhhhheeccCC-ccccCchhh----------hhhhhhhhhhhcCCc-c
Confidence            3356666666666643 3333 32211   3556666666665 455554421          123335666655432 2


Q ss_pred             cccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCC
Q 039042          232 TSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVD  311 (526)
Q Consensus       232 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  311 (526)
                      ...+..   +..+.++..+.+.++ .+..++...      ..+++++.|+++++.+.. +..  .....+++.|+++++.
T Consensus       222 ~~~~~~---~~~~~~l~~l~l~~n-~~~~~~~~~------~~l~~l~~L~~s~n~i~~-i~~--~~~~~~l~~L~~s~n~  288 (394)
T COG4886         222 IELLSS---LSNLKNLSGLELSNN-KLEDLPESI------GNLSNLETLDLSNNQISS-ISS--LGSLTNLRELDLSGNS  288 (394)
T ss_pred             eecchh---hhhcccccccccCCc-eeeeccchh------ccccccceeccccccccc-ccc--ccccCccCEEeccCcc
Confidence            222222   334555555554443 222211111      245556666666554421 111  2334566666666544


Q ss_pred             c
Q 039042          312 E  312 (526)
Q Consensus       312 ~  312 (526)
                      .
T Consensus       289 ~  289 (394)
T COG4886         289 L  289 (394)
T ss_pred             c
Confidence            3

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.31  E-value=5.3e-05  Score=80.92  Aligned_cols=135  Identities=17%  Similarity=0.174  Sum_probs=75.5

Q ss_pred             CCcccEEEEecCCCCCC--chhhhhhccCccc--ccccccchhhhcccccccchhhhhhhhhhccccccccccccccccc
Q 039042           75 SSQLKFLGIHGCRDALN--PSAESKRQRQEES--ANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAA  150 (526)
Q Consensus        75 l~~L~~L~L~~c~~~~~--p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~  150 (526)
                      -.+|++|++++......  |...-..+|.|+.  +.+..-...-+.     .....+++|+.||+++++++.++.     
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~-----~lc~sFpNL~sLDIS~TnI~nl~G-----  190 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFS-----QLCASFPNLRSLDISGTNISNLSG-----  190 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHH-----HHhhccCccceeecCCCCccCcHH-----
Confidence            36788888877655544  5554445666666  443322111110     011127888888888887776622     


Q ss_pred             ccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeeccc
Q 039042          151 MTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYD  227 (526)
Q Consensus       151 ~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  227 (526)
                       ++.++||+.|.+.+-....  ...... +-.|++|+.||++.-...... .....+.+..   ..+|+||.||.++
T Consensus       191 -IS~LknLq~L~mrnLe~e~--~~~l~~-LF~L~~L~vLDIS~~~~~~~~-~ii~qYlec~---~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  191 -ISRLKNLQVLSMRNLEFES--YQDLID-LFNLKKLRVLDISRDKNNDDT-KIIEQYLECG---MVLPELRFLDCSG  259 (699)
T ss_pred             -HhccccHHHHhccCCCCCc--hhhHHH-HhcccCCCeeeccccccccch-HHHHHHHHhc---ccCccccEEecCC
Confidence             6688888888887654332  111111 226888888888876443332 1111111111   3477888888775

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.24  E-value=1.5e-05  Score=83.23  Aligned_cols=36  Identities=25%  Similarity=0.359  Sum_probs=16.9

Q ss_pred             cccccEEEeeeCCcccccccchhHhhcCCCccEEEEe
Q 039042          299 LCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE  335 (526)
Q Consensus       299 ~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~  335 (526)
                      |++|++|.+.+|..+++ .--......++.|++|+++
T Consensus       268 c~~L~~L~l~~c~~lt~-~gl~~i~~~~~~L~~L~l~  303 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTD-EGLVSIAERCPSLRELDLS  303 (482)
T ss_pred             CCCcceEccCCCCccch-hHHHHHHHhcCcccEEeee
Confidence            45555555555554431 1112233345555555555

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.00  E-value=2.2e-05  Score=80.54  Aligned_cols=183  Identities=16%  Similarity=0.143  Sum_probs=90.8

Q ss_pred             ccccCCcccEEEEecCCCCCCchhhhhhccCccc---ccccccchhhhccc-ccccchhhhhhhhhhccccccccccccc
Q 039042           71 VRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES---ANDMQSNELILEDN-ANISNTLFLEKLEKLELRSINIERIWRN  146 (526)
Q Consensus        71 ~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~---i~~~~~l~~~~~~~-~~~~~~~~l~~L~~L~L~~~~l~~~~~~  146 (526)
                      ..-.|.+||+|.+.+|..... ..+..--..|+.   ....+.+++++..- ..++..-.--.|..-+.++|.+.-.-  
T Consensus       104 ~ifpF~sLr~LElrg~~L~~~-~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD--  180 (1096)
T KOG1859|consen  104 SIFPFRSLRVLELRGCDLSTA-KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMD--  180 (1096)
T ss_pred             eeccccceeeEEecCcchhhh-hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHH--
Confidence            344689999999999985543 000001112333   22223333433210 00011111234666666666544220  


Q ss_pred             ccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecc
Q 039042          147 QVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMY  226 (526)
Q Consensus       147 ~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~  226 (526)
                        .+ +.-++.|+.|+|++|+ ++.+  ..+.   .+++|++|+|++| .+..+|....         .++. |..|.++
T Consensus       181 --~S-Lqll~ale~LnLshNk-~~~v--~~Lr---~l~~LkhLDlsyN-~L~~vp~l~~---------~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  181 --ES-LQLLPALESLNLSHNK-FTKV--DNLR---RLPKLKHLDLSYN-CLRHVPQLSM---------VGCK-LQLLNLR  240 (1096)
T ss_pred             --HH-HHHHHHhhhhccchhh-hhhh--HHHH---hcccccccccccc-hhccccccch---------hhhh-heeeeec
Confidence              01 2346777777777754 3333  2222   6777777777777 5666654321         1223 7777776


Q ss_pred             cCccccccccCcccccCCCCccEEEeccCCCceeccc-cccCCccccccCCcceEEEeeccc
Q 039042          227 DLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFK-RTTNDLTKKVFPNLEELIVDAEYI  287 (526)
Q Consensus       227 ~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~  287 (526)
                      + +.++.+..    +.++.+|+.|+++++ -+..... +..     ..+..|+.|++.||-+
T Consensus       241 n-N~l~tL~g----ie~LksL~~LDlsyN-ll~~hseL~pL-----wsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  241 N-NALTTLRG----IENLKSLYGLDLSYN-LLSEHSELEPL-----WSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             c-cHHHhhhh----HHhhhhhhccchhHh-hhhcchhhhHH-----HHHHHHHHHhhcCCcc
Confidence            5 34444421    446777777777765 2222211 000     2345666777765533

>PLN03150 hypothetical protein; Provisional

Probab=96.92  E-value=0.0016  Score=69.80  Aligned_cols=88  Identities=18%  Similarity=0.222  Sum_probs=54.2

Q ss_pred             ceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcc-cccchHHHhhcccccEEE
Q 039042          354 IRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLK-NVLTFSIAKTLVRLREMK  431 (526)
Q Consensus       354 L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~l~~L~~L~  431 (526)
                      ++.|++. +.+....+..+..+++|+.|++++|.....+|..+..+++|+.|+++++ ++. .+|  ..++.+++|+.|+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP--~~l~~L~~L~~L~  496 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN-SFNGSIP--ESLGQLTSLRILN  496 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC-CCCCCCc--hHHhcCCCCCEEE
Confidence            5566666 6665555556666777777777776554556556666777777777765 333 333  4556677777777


Q ss_pred             Eccccccceeccc
Q 039042          432 IESCAMITEIVLA  444 (526)
Q Consensus       432 i~~c~~l~~~~~~  444 (526)
                      ++++.....+|..
T Consensus       497 Ls~N~l~g~iP~~  509 (623)
T PLN03150        497 LNGNSLSGRVPAA  509 (623)
T ss_pred             CcCCcccccCChH
Confidence            7765544445443

>PLN03150 hypothetical protein; Provisional

Probab=96.76  E-value=0.0015  Score=69.94  Aligned_cols=81  Identities=17%  Similarity=0.074  Sum_probs=35.3

Q ss_pred             ccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccccC
Q 039042          158 LTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTG  237 (526)
Q Consensus       158 L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~  237 (526)
                      ++.|+|+++. +...+|..+.   .+++|+.|++++|.....+|..+          +.+++|+.|+++++.-...+|..
T Consensus       420 v~~L~L~~n~-L~g~ip~~i~---~L~~L~~L~Ls~N~l~g~iP~~~----------~~l~~L~~LdLs~N~lsg~iP~~  485 (623)
T PLN03150        420 IDGLGLDNQG-LRGFIPNDIS---KLRHLQSINLSGNSIRGNIPPSL----------GSITSLEVLDLSYNSFNGSIPES  485 (623)
T ss_pred             EEEEECCCCC-ccccCCHHHh---CCCCCCEEECCCCcccCcCChHH----------hCCCCCCEEECCCCCCCCCCchH
Confidence            4445555432 2222233333   45555555555553222333222          34555555555543222233333


Q ss_pred             cccccCCCCccEEEeccC
Q 039042          238 DVHMLEFPSLKELWISRC  255 (526)
Q Consensus       238 ~~~~~~l~~L~~L~l~~c  255 (526)
                         ++.+++|+.|++++|
T Consensus       486 ---l~~L~~L~~L~Ls~N  500 (623)
T PLN03150        486 ---LGQLTSLRILNLNGN  500 (623)
T ss_pred             ---HhcCCCCCEEECcCC
Confidence               445555555555554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.74  E-value=0.00078  Score=62.37  Aligned_cols=38  Identities=5%  Similarity=0.022  Sum_probs=19.0

Q ss_pred             CCcCEEEEccCCCcccccchHHHhhcccccEEEEcccc
Q 039042          399 QNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCA  436 (526)
Q Consensus       399 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~  436 (526)
                      +.+++|+...|+...-.........+|++..+.+..|+
T Consensus       173 ~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P  210 (418)
T KOG2982|consen  173 TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP  210 (418)
T ss_pred             hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence            34555555555433222222344456666666666654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.60  E-value=0.0016  Score=60.45  Aligned_cols=188  Identities=13%  Similarity=0.080  Sum_probs=88.9

Q ss_pred             cccceeccccccccccccccccc----ccCCcccEEEEecCCCCCCchhhh-hhccCccc-ccccccchhhhcccccccc
Q 039042           50 IEDLELHELQEQDVNYFANELVR----VGSSQLKFLGIHGCRDALNPSAES-KRQRQEES-ANDMQSNELILEDNANISN  123 (526)
Q Consensus        50 ~~~L~~l~l~~~~~~~~~~~~~~----~~l~~L~~L~L~~c~~~~~p~~~l-~~l~~L~~-i~~~~~l~~~~~~~~~~~~  123 (526)
                      ..+++.++|.++.+.   +|-+.    ..+|.|++|+++.+..... ...+ ..+.+|++ +.+-+.+..-    ...+.
T Consensus        70 ~~~v~elDL~~N~iS---dWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~----~~~s~  141 (418)
T KOG2982|consen   70 VTDVKELDLTGNLIS---DWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWT----QSTSS  141 (418)
T ss_pred             hhhhhhhhcccchhc---cHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcCCCCChh----hhhhh
Confidence            556677777654443   33222    3578888888887654433 1111 23445555 3322222111    01122


Q ss_pred             hhhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEee
Q 039042          124 TLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVV  203 (526)
Q Consensus       124 ~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~  203 (526)
                      ...++.++.|+++.|++..+-..+-.. -.--+.+++|+.-+|......--..+++  .++++..+-+..|+ ++....+
T Consensus       142 l~~lP~vtelHmS~N~~rq~n~Dd~c~-e~~s~~v~tlh~~~c~~~~w~~~~~l~r--~Fpnv~sv~v~e~P-lK~~s~e  217 (418)
T KOG2982|consen  142 LDDLPKVTELHMSDNSLRQLNLDDNCI-EDWSTEVLTLHQLPCLEQLWLNKNKLSR--IFPNVNSVFVCEGP-LKTESSE  217 (418)
T ss_pred             hhcchhhhhhhhccchhhhhccccccc-cccchhhhhhhcCCcHHHHHHHHHhHHh--hcccchheeeecCc-ccchhhc
Confidence            234677777777777332111110000 0012345666666554221110111222  45566666666652 3333222


Q ss_pred             cchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCce
Q 039042          204 DNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFM  259 (526)
Q Consensus       204 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~  259 (526)
                      ...        ..+|.+--|+++. +++.+|... ..+..|++|..|.+++.+-..
T Consensus       218 k~s--------e~~p~~~~LnL~~-~~idswasv-D~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  218 KGS--------EPFPSLSCLNLGA-NNIDSWASV-DALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             ccC--------CCCCcchhhhhcc-cccccHHHH-HHHcCCchhheeeccCCcccc
Confidence            111        3456565666654 455555443 346677888887777765443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.43  E-value=0.00023  Score=65.14  Aligned_cols=104  Identities=20%  Similarity=0.167  Sum_probs=73.5

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      +.+.++|+.-+|++.++-.      +..++.|+.|.|+-| +++.+.|     ++.+.+|++|+|..| .|..+...+|-
T Consensus        18 l~~vkKLNcwg~~L~DIsi------c~kMp~lEVLsLSvN-kIssL~p-----l~rCtrLkElYLRkN-~I~sldEL~YL   84 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISI------CEKMPLLEVLSLSVN-KISSLAP-----LQRCTRLKELYLRKN-CIESLDELEYL   84 (388)
T ss_pred             HHHhhhhcccCCCccHHHH------HHhcccceeEEeecc-ccccchh-----HHHHHHHHHHHHHhc-ccccHHHHHHH
Confidence            7788899999998887633      336899999999985 4555544     558999999999998 77777655543


Q ss_pred             hhhcccccccccccceeecccCccccccccCc--ccccCCCCccEEE
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGD--VHMLEFPSLKELW  251 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~--~~~~~l~~L~~L~  251 (526)
                              .++|+|+.|.+..++.-..-....  ..+..+|+|++|+
T Consensus        85 --------knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   85 --------KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             --------hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence                    788999999988755433221110  1244577777775

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.21  E-value=0.001  Score=62.97  Aligned_cols=214  Identities=14%  Similarity=0.047  Sum_probs=96.9

Q ss_pred             Hhccccccceecccccccc-ccccccc--ccccCCcccEEEEecCCCCCCchhhhh-hccCcccccccccchhhhccccc
Q 039042           45 LQLQGIEDLELHELQEQDV-NYFANEL--VRVGSSQLKFLGIHGCRDALNPSAESK-RQRQEESANDMQSNELILEDNAN  120 (526)
Q Consensus        45 ~~l~~~~~L~~l~l~~~~~-~~~~~~~--~~~~l~~L~~L~L~~c~~~~~p~~~l~-~l~~L~~i~~~~~l~~~~~~~~~  120 (526)
                      ..|.+...|+.++|+.+-. +..+..+  -..++..|++|.|.+|+....-...++ .+..|.+      .+.+      
T Consensus        86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~------~kk~------  153 (382)
T KOG1909|consen   86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAV------NKKA------  153 (382)
T ss_pred             HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHH------Hhcc------
Confidence            4555566788888887543 2233222  235689999999999987665111111 1111111      0011      


Q ss_pred             ccchhhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCccc---c-cccccccccEEeeecccc
Q 039042          121 ISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCT---V-SNNSFVRLQYIRIEKCHV  196 (526)
Q Consensus       121 ~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l---~-~l~~l~~L~~L~l~~~~~  196 (526)
                          ...++||++....|++...-.......+...+.|+.+.+..+..-    |..+   + .+..+++|+.|++..|. 
T Consensus       154 ----~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~----~eG~~al~eal~~~~~LevLdl~DNt-  224 (382)
T KOG1909|consen  154 ----ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIR----PEGVTALAEALEHCPHLEVLDLRDNT-  224 (382)
T ss_pred             ----CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEeccccc----CchhHHHHHHHHhCCcceeeecccch-
Confidence                114566666666664442211000000223456666666654321    1111   0 02356666666666652 


Q ss_pred             ccEEEeecchhhhcccccccccccceeecccCcccccc---ccCcccccCCCCccEEEeccCCCceeccccccCCccccc
Q 039042          197 LEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSF---CTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKV  273 (526)
Q Consensus       197 l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~  273 (526)
                      +..-.     .......+..+++|++|++++|. ++.-   ....+.-...|+|++|.+.+|.. +.-...... .-...
T Consensus       225 ft~eg-----s~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeI-t~da~~~la-~~~~e  296 (382)
T KOG1909|consen  225 FTLEG-----SVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEI-TRDAALALA-ACMAE  296 (382)
T ss_pred             hhhHH-----HHHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchh-HHHHHHHHH-HHHhc
Confidence            11110     01111113456666777766663 2210   00000122366777777766632 111000000 00023


Q ss_pred             cCCcceEEEeeccc
Q 039042          274 FPNLEELIVDAEYI  287 (526)
Q Consensus       274 l~~L~~L~l~~~~~  287 (526)
                      .+.|.+|++++|.+
T Consensus       297 k~dL~kLnLngN~l  310 (382)
T KOG1909|consen  297 KPDLEKLNLNGNRL  310 (382)
T ss_pred             chhhHHhcCCcccc
Confidence            56777777776655

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.14  E-value=0.0058  Score=39.97  Aligned_cols=33  Identities=21%  Similarity=0.354  Sum_probs=15.2

Q ss_pred             ccceeecccCccccccccCcccccCCCCccEEEeccC
Q 039042          219 QLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRC  255 (526)
Q Consensus       219 ~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c  255 (526)
                      +|++|+++++ .+++++..   +.++++|++|++++|
T Consensus         2 ~L~~L~l~~N-~i~~l~~~---l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNN-QITDLPPE---LSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSS-S-SSHGGH---GTTCTTSSEEEETSS
T ss_pred             cceEEEccCC-CCcccCch---HhCCCCCCEEEecCC
Confidence            4555555542 44444432   445555555555555

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.98  E-value=0.0051  Score=40.26  Aligned_cols=33  Identities=21%  Similarity=0.223  Sum_probs=14.7

Q ss_pred             cccEEEeccCCCceecCCcccccccccccccEEeeecc
Q 039042          157 NLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKC  194 (526)
Q Consensus       157 ~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~  194 (526)
                      +|++|++++| .+++++| .++   .|++|++|++++|
T Consensus         2 ~L~~L~l~~N-~i~~l~~-~l~---~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNN-QITDLPP-ELS---NLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSS-S-SSHGG-HGT---TCTTSSEEEETSS
T ss_pred             cceEEEccCC-CCcccCc-hHh---CCCCCCEEEecCC
Confidence            4555555554 2333322 222   4555555555555

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=95.60  E-value=0.0036  Score=63.85  Aligned_cols=58  Identities=17%  Similarity=0.108  Sum_probs=35.6

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeecc
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKC  194 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~  194 (526)
                      +..|+.|++.+|.++.+-.      +..+.+|+.+++++|.. ..+-+..+   ..+.+++.+++.++
T Consensus       139 l~~L~~L~l~~N~i~~~~~------~~~l~~L~~l~l~~n~i-~~ie~~~~---~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  139 LTLLKELNLSGNLISDISG------LESLKSLKLLDLSYNRI-VDIENDEL---SELISLEELDLGGN  196 (414)
T ss_pred             ccchhhheeccCcchhccC------CccchhhhcccCCcchh-hhhhhhhh---hhccchHHHhccCC
Confidence            5568888888887665421      22477788888887643 32212001   16777888888776

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.58  E-value=0.014  Score=51.33  Aligned_cols=11  Identities=36%  Similarity=0.595  Sum_probs=5.7

Q ss_pred             CCCCccEEEec
Q 039042          243 EFPSLKELWIS  253 (526)
Q Consensus       243 ~l~~L~~L~l~  253 (526)
                      .+|+|+.|+..
T Consensus       138 klp~l~~LDF~  148 (233)
T KOG1644|consen  138 KLPSLRTLDFQ  148 (233)
T ss_pred             ecCcceEeehh
Confidence            45555555544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=95.48  E-value=0.0016  Score=66.32  Aligned_cols=57  Identities=25%  Similarity=0.228  Sum_probs=26.0

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeecc
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKC  194 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~  194 (526)
                      +.+|+.|++.+|.++.+...     +..+++|++|+++++ .++.+-  .   +..++.|+.|++.+|
T Consensus        94 ~~~l~~l~l~~n~i~~i~~~-----l~~~~~L~~L~ls~N-~I~~i~--~---l~~l~~L~~L~l~~N  150 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEKIENL-----LSSLVNLQVLDLSFN-KITKLE--G---LSTLTLLKELNLSGN  150 (414)
T ss_pred             ccceeeeeccccchhhcccc-----hhhhhcchheecccc-cccccc--c---hhhccchhhheeccC
Confidence            45555555555555443110     114555555555553 233221  1   224445555555555

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.13  E-value=0.0018  Score=56.73  Aligned_cols=45  Identities=16%  Similarity=0.386  Sum_probs=22.7

Q ss_pred             ccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccce
Q 039042          396 TSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITE  440 (526)
Q Consensus       396 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~  440 (526)
                      ..+++++.|.+.+|..+.+.....+.+..++|+.|+|++|+.+++
T Consensus       122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~  166 (221)
T KOG3864|consen  122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD  166 (221)
T ss_pred             hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence            344555555555555555543333334445555555555554443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.09  E-value=0.027  Score=49.58  Aligned_cols=86  Identities=14%  Similarity=0.148  Sum_probs=44.8

Q ss_pred             ccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceec
Q 039042          182 SFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVR  261 (526)
Q Consensus       182 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  261 (526)
                      ++++|..|.+.+| .|..+.....         ..+++|+.|.+.+ +++.++..- ..+..||.|++|.+-+++.-..-
T Consensus        62 ~l~rL~tLll~nN-rIt~I~p~L~---------~~~p~l~~L~Ltn-Nsi~~l~dl-~pLa~~p~L~~Ltll~Npv~~k~  129 (233)
T KOG1644|consen   62 HLPRLHTLLLNNN-RITRIDPDLD---------TFLPNLKTLILTN-NSIQELGDL-DPLASCPKLEYLTLLGNPVEHKK  129 (233)
T ss_pred             CccccceEEecCC-cceeeccchh---------hhccccceEEecC-cchhhhhhc-chhccCCccceeeecCCchhccc
Confidence            5666666666665 5555543321         2456666666665 344443221 12446777777777665321100


Q ss_pred             c-ccccCCccccccCCcceEEEe
Q 039042          262 F-KRTTNDLTKKVFPNLEELIVD  283 (526)
Q Consensus       262 ~-~~~~~~~~~~~l~~L~~L~l~  283 (526)
                      - ..++    -..+|+|+.||..
T Consensus       130 ~YR~yv----l~klp~l~~LDF~  148 (233)
T KOG1644|consen  130 NYRLYV----LYKLPSLRTLDFQ  148 (233)
T ss_pred             CceeEE----EEecCcceEeehh
Confidence            0 0111    1467888888887

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=94.92  E-value=0.00078  Score=69.68  Aligned_cols=77  Identities=19%  Similarity=0.147  Sum_probs=36.5

Q ss_pred             ccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCceeeccccccccC
Q 039042          298 LLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMN  375 (526)
Q Consensus       298 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~  375 (526)
                      .++.|+.|+++.+....     ...+..++.|++|+|+.+ ...+|.-..  .++ .|..|.+. +.++.+.  ++.++.
T Consensus       185 ll~ale~LnLshNk~~~-----v~~Lr~l~~LkhLDlsyN~L~~vp~l~~--~gc-~L~~L~lrnN~l~tL~--gie~Lk  254 (1096)
T KOG1859|consen  185 LLPALESLNLSHNKFTK-----VDNLRRLPKLKHLDLSYNCLRHVPQLSM--VGC-KLQLLNLRNNALTTLR--GIENLK  254 (1096)
T ss_pred             HHHHhhhhccchhhhhh-----hHHHHhcccccccccccchhccccccch--hhh-hheeeeecccHHHhhh--hHHhhh
Confidence            34566666666655433     225556666666666622 222221111  111 25555555 4444432  344455


Q ss_pred             cccEEEEec
Q 039042          376 NLVILHVTN  384 (526)
Q Consensus       376 ~L~~L~l~~  384 (526)
                      +|+.||+++
T Consensus       255 sL~~LDlsy  263 (1096)
T KOG1859|consen  255 SLYGLDLSY  263 (1096)
T ss_pred             hhhccchhH
Confidence            555555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.15  E-value=0.0017  Score=59.55  Aligned_cols=108  Identities=19%  Similarity=0.285  Sum_probs=71.2

Q ss_pred             cCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccc
Q 039042          154 GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTS  233 (526)
Q Consensus       154 ~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~  233 (526)
                      .+.+.+.|+.++| .+.++   ++.+  .++.|+.|.|+-| .|..+...           ..+++|++|++.. +.+.+
T Consensus        17 dl~~vkKLNcwg~-~L~DI---sic~--kMp~lEVLsLSvN-kIssL~pl-----------~rCtrLkElYLRk-N~I~s   77 (388)
T KOG2123|consen   17 DLENVKKLNCWGC-GLDDI---SICE--KMPLLEVLSLSVN-KISSLAPL-----------QRCTRLKELYLRK-NCIES   77 (388)
T ss_pred             HHHHhhhhcccCC-CccHH---HHHH--hcccceeEEeecc-ccccchhH-----------HHHHHHHHHHHHh-ccccc
Confidence            3667889999998 45544   3333  8999999999988 66665332           5789999999986 34555


Q ss_pred             cccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEE
Q 039042          234 FCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIV  282 (526)
Q Consensus       234 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l  282 (526)
                      +... .-+.++|+|+.|.|..++.-..-...+-. ..-..+|+|++|+=
T Consensus        78 ldEL-~YLknlpsLr~LWL~ENPCc~~ag~nYR~-~VLR~LPnLkKLDn  124 (388)
T KOG2123|consen   78 LDEL-EYLKNLPSLRTLWLDENPCCGEAGQNYRR-KVLRVLPNLKKLDN  124 (388)
T ss_pred             HHHH-HHHhcCchhhhHhhccCCcccccchhHHH-HHHHHcccchhccC
Confidence            5332 33668999999999887654332221100 01145778887753

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.63  E-value=0.041  Score=50.42  Aligned_cols=62  Identities=23%  Similarity=0.112  Sum_probs=30.6

Q ss_pred             ccCCcceEEEeeccccccceec-cccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe
Q 039042          273 VFPNLEELIVDAEYIITNKFIF-SEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE  335 (526)
Q Consensus       273 ~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~  335 (526)
                      .+|+|+++++++|.+.. +..+ |...+.+|..|++.+|.-..-..--...+.-+++|++|+-.
T Consensus        89 ~~P~l~~l~ls~Nki~~-lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen   89 KAPNLKVLNLSGNKIKD-LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             hCCceeEEeecCCcccc-ccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            34555555555544422 2222 22345566666666655432001123455667788777665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.52  E-value=0.31  Score=40.30  Aligned_cols=11  Identities=27%  Similarity=0.317  Sum_probs=3.7

Q ss_pred             CCCCccEEEec
Q 039042          243 EFPSLKELWIS  253 (526)
Q Consensus       243 ~l~~L~~L~l~  253 (526)
                      .+++|+.+.+.
T Consensus        33 ~~~~l~~i~~~   43 (129)
T PF13306_consen   33 NCTSLKSINFP   43 (129)
T ss_dssp             T-TT-SEEEES
T ss_pred             ccccccccccc
Confidence            33344444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.04  E-value=0.56  Score=38.71  Aligned_cols=31  Identities=13%  Similarity=0.017  Sum_probs=11.9

Q ss_pred             cceEEEeccCceeeccccccccCcccEEEEe
Q 039042          353 IIRRVFRCYDLKYILKQESSIMNNLVILHVT  383 (526)
Q Consensus       353 ~L~~L~l~~~l~~~~~~~~~~l~~L~~L~l~  383 (526)
                      +|+.+.+.+.+..+....+..+++++.+.+.
T Consensus        36 ~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen   36 SLKSINFPNNLTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             T-SEEEESSTTSCE-TTTTTT-TT-EEEEET
T ss_pred             ccccccccccccccceeeeeccccccccccc
Confidence            3333333333444444444444455555553

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.58  E-value=0.023  Score=49.95  Aligned_cols=68  Identities=15%  Similarity=0.209  Sum_probs=50.7

Q ss_pred             cccccCcccEEEEeccCCccccc--CCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEcccccc
Q 039042          370 ESSIMNNLVILHVTNCHRLINLV--PSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMI  438 (526)
Q Consensus       370 ~~~~l~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l  438 (526)
                      .+..+++++.|.+.+|..+....  .-.+..++|+.|+|++|+++++... ..+..+++|+.|.+.+.+.+
T Consensus       120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-ACLLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-HHHHHhhhhHHHHhcCchhh
Confidence            34556888999999998876432  1123679999999999999998653 36678899999988875533

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=92.28  E-value=0.0048  Score=50.66  Aligned_cols=44  Identities=9%  Similarity=0.098  Sum_probs=19.0

Q ss_pred             CCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEee
Q 039042          155 IQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVV  203 (526)
Q Consensus       155 l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~  203 (526)
                      -..|...+|++| .++.+ |..+..  .++.++.|++.++ .+..+|.+
T Consensus        52 ~~el~~i~ls~N-~fk~f-p~kft~--kf~t~t~lNl~~n-eisdvPeE   95 (177)
T KOG4579|consen   52 GYELTKISLSDN-GFKKF-PKKFTI--KFPTATTLNLANN-EISDVPEE   95 (177)
T ss_pred             CceEEEEecccc-hhhhC-CHHHhh--ccchhhhhhcchh-hhhhchHH
Confidence            344444555553 23332 333332  3444555555554 44444443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=90.07  E-value=0.17  Score=46.59  Aligned_cols=86  Identities=15%  Similarity=0.104  Sum_probs=51.2

Q ss_pred             cccccceEEEec-cCceee--ccccccccCcccEEEEeccCC--cccccCCCccCCCcCEEEEccCCCcccccc--hHHH
Q 039042          349 GMEVIIRRVFRC-YDLKYI--LKQESSIMNNLVILHVTNCHR--LINLVPSSTSFQNLTSLEISYCNGLKNVLT--FSIA  421 (526)
Q Consensus       349 ~~~~~L~~L~l~-~~l~~~--~~~~~~~l~~L~~L~l~~c~~--l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~  421 (526)
                      ..+|+|++|.++ +.....  .+.....+++|+++++++++.  ++++ .....+.+|..|++.+|+... +-.  ...+
T Consensus        62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf  139 (260)
T KOG2739|consen   62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELENLKSLDLFNCSVTN-LDDYREKVF  139 (260)
T ss_pred             CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhhcchhhhhcccCCccc-cccHHHHHH
Confidence            566788888888 422211  112223458888888887753  2333 234566778888888885433 211  1245


Q ss_pred             hhcccccEEEEcccc
Q 039042          422 KTLVRLREMKIESCA  436 (526)
Q Consensus       422 ~~l~~L~~L~i~~c~  436 (526)
                      ..+++|+.|+-..+.
T Consensus       140 ~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  140 LLLPSLKYLDGCDVD  154 (260)
T ss_pred             HHhhhhccccccccC
Confidence            566777777776654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.21  E-value=0.26  Score=24.76  Aligned_cols=11  Identities=18%  Similarity=0.232  Sum_probs=4.5

Q ss_pred             CccEEeEecCC
Q 039042          488 SLERLLVDDCT  498 (526)
Q Consensus       488 ~L~~L~l~~C~  498 (526)
                      +|+.|++++|.
T Consensus         2 ~L~~L~l~~n~   12 (17)
T PF13504_consen    2 NLRTLDLSNNR   12 (17)
T ss_dssp             T-SEEEETSS-
T ss_pred             ccCEEECCCCC
Confidence            44555555543

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=86.42  E-value=0.14  Score=42.42  Aligned_cols=58  Identities=12%  Similarity=0.113  Sum_probs=32.3

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeecc
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKC  194 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~  194 (526)
                      ++.+..|++.+|.+.++    |.+ +..++.|+.|+++.|+...  .|..++   .|.+|-.|+..++
T Consensus        76 f~t~t~lNl~~neisdv----PeE-~Aam~aLr~lNl~~N~l~~--~p~vi~---~L~~l~~Lds~~n  133 (177)
T KOG4579|consen   76 FPTATTLNLANNEISDV----PEE-LAAMPALRSLNLRFNPLNA--EPRVIA---PLIKLDMLDSPEN  133 (177)
T ss_pred             cchhhhhhcchhhhhhc----hHH-HhhhHHhhhcccccCcccc--chHHHH---HHHhHHHhcCCCC
Confidence            44566666666666555    444 4456666666666654333  344444   3555555555554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=84.17  E-value=0.66  Score=24.99  Aligned_cols=16  Identities=25%  Similarity=0.308  Sum_probs=7.7

Q ss_pred             ccEEeEecCCCccccCC
Q 039042          489 LERLLVDDCTNMKGFSR  505 (526)
Q Consensus       489 L~~L~l~~C~~l~~l~~  505 (526)
                      |++|++++| +++.+|.
T Consensus         2 L~~Ldls~n-~l~~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGN-NLTSIPS   17 (22)
T ss_dssp             ESEEEETSS-EESEEGT
T ss_pred             ccEEECCCC-cCEeCCh
Confidence            445555554 4444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=81.88  E-value=0.8  Score=25.84  Aligned_cols=17  Identities=35%  Similarity=0.694  Sum_probs=11.7

Q ss_pred             CCCccEEeEecCCCccc
Q 039042          486 FPSLERLLVDDCTNMKG  502 (526)
Q Consensus       486 ~~~L~~L~l~~C~~l~~  502 (526)
                      +++|++|++++|++++.
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            36677777777776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	526
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 1e-08
 Identities = 73/521 (14%), Positives = 165/521 (31%), Gaps = 129/521 (24%)

Query: 23  NIWRREFRLRLNNKICLKDWLILQLQGIEDLELH--------ELQEQDVNYFANELVRVG 74
           N+ R +  L+L      +  L L+L+  +++ +          +        A ++    
Sbjct: 130 NVSRLQPYLKL------RQAL-LELRPAKNVLIDGVLGSGKTWV--------ALDVCLSY 174

Query: 75  SSQLKF-LGIH----GCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEK 129
             Q K    I        +    S E+  +  ++    +  N     D++  SN      
Sbjct: 175 KVQCKMDFKIFWLNLKNCN----SPETVLEMLQKLLYQIDPNWTSRSDHS--SNIKLRIH 228

Query: 130 LEKLELRSINIERIWRNQVAAMTC-----GIQNLTHLTLYNCMNLRC--LFSSCTVSNNS 182
             + ELR +   + + N      C      +QN       N  NL C  L ++       
Sbjct: 229 SIQAELRRLLKSKPYEN------CLLVLLNVQNAKAW---NAFNLSCKILLTTRFKQVTD 279

Query: 183 FV---RLQYIRIEKCHV------LEELI--VVDNQ-----EEERKNN---IVMFPQL--- 220
           F+      +I ++   +      ++ L+   +D +      E    N   + +  +    
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339

Query: 221 -----QYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFP 275
                   K  + +KLT+     +++LE    ++++        V F  + + +   +  
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD----RLSV-FPPSAH-IPTILLS 393

Query: 276 NL-EELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLD-DFLQRFPTLKVLQ 333
            +  ++I     ++ NK       L K   ++ +  +   +I S+  +   +      L 
Sbjct: 394 LIWFDVIKSDVMVVVNK-------LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446

Query: 334 ---IEGYSDWLPKEKVENGMEVIIRRVFRCYDLKYILKQESS--IMNNLVILHVTNCHRL 388
              ++ Y                   + + +D   ++         +++   H+ N    
Sbjct: 447 RSIVDHY------------------NIPKTFDSDDLIPPYLDQYFYSHIG-HHLKNIEHP 487

Query: 389 INLVPSSTSFQNLTSLEISYCN-GLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDD 447
             +      F +   LE    +       + SI  TL +L+  K      I      D+D
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK----PYIC-----DND 538

Query: 448 DDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPS 488
             ++   + ++ F    E  L+  K          AL    
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLL---RIALMAED 576

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 6e-08
 Identities = 82/545 (15%), Positives = 171/545 (31%), Gaps = 157/545 (28%)

Query: 36  KICLKDWLILQLQG-IEDLELHELQEQDVNYFANE----LVRVGSSQLKFLGIHGCRDAL 90
           +   KD L +     +++ +  ++Q+   +  + E    ++    +    L +      L
Sbjct: 15  QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT---L 71

Query: 91  NPSAESKRQRQEESANDMQSN------ELILEDNANISNT-LFLEKLEKL-----ELRSI 138
               E   Q+  E    ++ N       +  E       T +++E+ ++L          
Sbjct: 72  LSKQEEMVQKFVEEV--LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129

Query: 139 NIERIWRNQVAAMTCGIQNLTH---LTLY-------NCMNLRCLFSSCTVSNNSFVRLQY 188
           N+ R+       +   +  L     + +          + L    S        F ++ +
Sbjct: 130 NVSRL--QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF-KIFW 186

Query: 189 IRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLK 248
           + ++ C+  E ++                  LQ L +Y ++   ++ +   H        
Sbjct: 187 LNLKNCNSPETVLE----------------MLQKL-LYQIDP--NWTSRSDHSSNIKLRI 227

Query: 249 ELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIV-----DAEYIITNKFIFSEDLLCKLK 303
               +     +            K + N   L+V     +A+    N F    +L CK+ 
Sbjct: 228 HSIQAELRRLLKS----------KPYEN--CLLVLLNVQNAKAW--NAF----NLSCKI- 268

Query: 304 CL----DVEFVDEL----TTILSLDDFLQRFPTLKVLQIEGYSDW-------LPKEKVEN 348
            L      +  D L    TT +SLD         +V  +     +       LP+E +  
Sbjct: 269 -LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL--LLKYLDCRPQDLPREVLTT 325

Query: 349 G---MEVIIRRVFRCYDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLE 405
               + +I             ++   +  +N    HV NC +L  ++   +S   L   E
Sbjct: 326 NPRRLSIIAES----------IRDGLATWDNW--KHV-NCDKLTTII--ESSLNVLEPAE 370

Query: 406 ISYCNGLKNVLTFSIAKTLVRLREMKIESCAM------ITEIVLA---DDDDDHDAAKDE 456
                                 R+M  +  ++      I  I+L+    D    D     
Sbjct: 371 ---------------------YRKM-FDRLSVFPPSAHIPTILLSLIWFDVIKSD---VM 405

Query: 457 VIAFSELNELKLLNLKSLRSFYS--------GNRALNFPSLERLLVDDCTNMKGFSRGEL 508
           V+  ++L++  L+  +   S  S          +  N  +L R +VD     K F   +L
Sbjct: 406 VVV-NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464

Query: 509 STPVL 513
             P L
Sbjct: 465 IPPYL 469

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 60/403 (14%), Positives = 119/403 (29%), Gaps = 83/403 (20%)

Query: 135 LRSINIER--IWRNQVAAMTCGIQNLTHLTLYNCMN-----LRCLFSSCTVSNNSFVRLQ 187
           L  I ++R  +  + +  +    +N   L L +C       L  + ++C         L+
Sbjct: 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCR-------NLK 159

Query: 188 YIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMY---------DLEKLTSFCTGD 238
            + + +  V +      +   +       +  L  L +           LE+L + C   
Sbjct: 160 ELDLRESDVDDVSGHWLSHFPDT------YTSLVSLNISCLASEVSFSALERLVTRC--- 210

Query: 239 VHMLEFPSLKELWISRCPEFMVRFKRTTNDLTK--KVFPNLEELIVDAEYIITNKFIFSE 296
                 P+LK L ++R              L    +  P LEEL            ++S 
Sbjct: 211 ------PNLKSLKLNRA--------VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG 256

Query: 297 DLLCKLKCLDVEFVDELTTIL--SLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVII 354
             +    C ++  +      +   L         L  L +                  ++
Sbjct: 257 LSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSY---------ATVQSYDLV 307

Query: 355 RRVFRCYDLKYI----------LKQESSIMNNLVILHVTNCHRLIN----------LVPS 394
           + + +C  L+ +          L+  +S   +L  L V      +           LV  
Sbjct: 308 KLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367

Query: 395 STSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAK 454
           S     L S+ + +C  + N    +IA+    +   ++          L  +  D     
Sbjct: 368 SMGCPKLESV-LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD-IGFG 425

Query: 455 DEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDC 497
             V    +L  L L  L + + F           +E L V   
Sbjct: 426 AIVEHCKDLRRLSLSGLLTDKVFEYI--GTYAKKMEMLSVAFA 466

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 61/391 (15%), Positives = 117/391 (29%), Gaps = 64/391 (16%)

Query: 129 KLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQY 188
           ++E+   R + I   +    A +      +  + L    +                    
Sbjct: 39  EIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIE 98

Query: 189 IRIEKCHVLEELIVVDNQ--EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHML--EF 244
                   LEE+ +      ++  +     F   + L    L     F T  +  +    
Sbjct: 99  AMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVL---VLSSCEGFSTDGLAAIAATC 155

Query: 245 PSLKELWISRCPEFMVRFKRTTNDLTK--KVFPNLEEL-IVDAEYIITNKFIFSEDLLCK 301
            +LKEL +            + + L+     + +L  L I      ++   +      C 
Sbjct: 156 RNLKELDLRESD----VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCP 211

Query: 302 -LKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVFRC 360
            LK L +     L  + +L   LQR P L+ L   GY+  +  +        +   +  C
Sbjct: 212 NLKSLKLNRAVPLEKLATL---LQRAPQLEELGTGGYTAEVRPDVYSG----LSVALSGC 264

Query: 361 YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSI 420
            +L+  L      +   +    + C               LT+L +SY       L   +
Sbjct: 265 KELRC-LSGFWDAVPAYLPAVYSVCS-------------RLTTLNLSYATVQSYDL-VKL 309

Query: 421 AKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSG 480
                +L+ + +     I +  L            EV+A S   +L+ L +     F   
Sbjct: 310 LCQCPKLQRLWV--LDYIEDAGL------------EVLA-STCKDLRELRVFPSEPFVME 354

Query: 481 NR-----------ALNFPSLERLLVDDCTNM 500
                        ++  P LE +L   C  M
Sbjct: 355 PNVALTEQGLVSVSMGCPKLESVLY-FCRQM 384

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 59/442 (13%), Positives = 120/442 (27%), Gaps = 95/442 (21%)

Query: 129 KLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQY 188
           K++ L +   +        +  +     +L  L  Y             +S      +  
Sbjct: 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT-------EFAKISPKDLETI-- 215

Query: 189 IRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLK 248
                C  L  + V D +  E          L+      L +        ++++    L 
Sbjct: 216 --ARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC 273

Query: 249 ELWISRCPEFMVRF----------------KRTTNDLTKKV--FPNLEELIVDAEYIITN 290
            L +S      +                     T D    +   PNLE L  +   +I +
Sbjct: 274 RLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVL--ETRNVIGD 331

Query: 291 KFIFSEDLLCK-LKCLDVEFVDELTTIL---------SLDDFLQRFPTLKVLQIEGYSDW 340
           + +      CK LK L +E   +   +           L    Q    L+ + +      
Sbjct: 332 RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV---- 387

Query: 341 LPKEKVEN-GMEVIIR-----RVFRCYDLKYILKQESSIMNNLVILHVTNCHRLINLVPS 394
                + N  +E I         FR   L    +     ++N V   +  C +L      
Sbjct: 388 ---SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY 444

Query: 395 STSFQ--------------NLTSLEISYCN----GLKNVLTFSIAKTLVRLREMKIESCA 436
                              N+  + + Y      GL        ++    L+++++  C 
Sbjct: 445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM-----EFSRGCPNLQKLEMRGCC 499

Query: 437 MITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNR----ALNFPSLERL 492
                + A              A ++L  L+ L ++  R+  +G      A  + ++E +
Sbjct: 500 FSERAIAA--------------AVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELI 545

Query: 493 LVDDCTNMKGFSRGELSTPVLH 514
                  +             H
Sbjct: 546 PSRRVPEVNQQGEIREMEHPAH 567

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	526
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.96
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.96
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.96
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.94
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.94
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.94
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.94
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.93
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.93
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.92
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.92
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.91
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.91
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.9
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.9
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.9
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.89
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.89
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.88
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.88
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.88
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.88
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.88
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.87
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.87
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.87
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.87
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.87
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.87
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.86
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.86
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.85
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.84
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.84
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.82
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.82
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.81
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.79
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.79
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.79
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.78
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.78
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.75
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.75
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.73
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.73
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.72
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.7
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.7
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.7
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.7
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.7
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.7
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.69
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.69
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.69
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.68
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.68
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.68
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.67
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.64
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.64
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.6
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.6
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.57
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.57
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.57
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.56
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.54
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.5
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.49
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.49
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.49
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.48
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.48
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.47
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.44
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.43
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.42
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.41
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.4
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.38
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.31
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.28
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.27
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.27
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.26
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.25
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.24
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.21
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.15
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.13
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.1
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.05
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.03
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.03
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.03
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.0
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.97
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.91
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.91
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.89
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.85
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.82
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.74
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.74
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.74
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.7
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.7
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.69
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.68
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.66
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.66
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.65
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.63
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.61
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.57
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.46
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.45
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.35
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.34
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.3
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.26
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.25
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.24
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.22
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.09
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.02
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.83
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.81
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.76
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.72
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.71
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.69
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.69
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.48
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.21
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	94.93
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	94.64
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	94.15

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=1e-29  Score=277.90  Aligned_cols=446  Identities=14%  Similarity=0.015  Sum_probs=261.4

Q ss_pred             cccccCCc-eeeeEEEEecceeeh--hHHHHHhccccccceecccccccccccccccccccCCcccEEEEecCCCCCC-c
Q 039042           17 WYWESTNI-WRREFRLRLNNKICL--KDWLILQLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALN-P   92 (526)
Q Consensus        17 ~~~~~~~~-~~~~~~l~l~~~~~~--~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~-p   92 (526)
                      |.|.|..+ ++++..+++......  -..+...+..++.|++++++.+++...|.  ....+++|++|+|++|..... |
T Consensus        40 C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~--~~~~l~~L~~L~Ls~n~l~~~~~  117 (768)
T 3rgz_A           40 CTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS--GFKCSASLTSLDLSRNSLSGPVT  117 (768)
T ss_dssp             GGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCC--CCCCCTTCCEEECCSSEEEEEGG
T ss_pred             cCCcceEECCCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCch--hhccCCCCCEEECCCCcCCCcCC
Confidence            78887544 467778888654211  11255677888888888888776655444  346788899999998876654 3


Q ss_pred             h-hhhhhccCccc--ccccccchhhhcccccccchhhhhhhhhhccccccccccccc-----------------------
Q 039042           93 S-AESKRQRQEES--ANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRN-----------------------  146 (526)
Q Consensus        93 ~-~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~-----------------------  146 (526)
                      . ..++++++|++  ++++.....++...     ...+++|++|++++|.++.....                       
T Consensus       118 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  192 (768)
T 3rgz_A          118 TLTSLGSCSGLKFLNVSSNTLDFPGKVSG-----GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG  192 (768)
T ss_dssp             GGGGGGGCTTCCEEECCSSEEECCSSCCS-----CCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEES
T ss_pred             ChHHHhCCCCCCEEECcCCccCCcCCHHH-----hccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccc
Confidence            3 24778888888  65554322222211     01144455555544433321100                       


Q ss_pred             -ccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeec
Q 039042          147 -QVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKM  225 (526)
Q Consensus       147 -~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l  225 (526)
                       .+   +..+++|++|++++|.... ..|. ++   .+++|++|++++|.....++..          +..+++|++|++
T Consensus       193 ~~~---~~~l~~L~~L~Ls~n~l~~-~~~~-l~---~l~~L~~L~Ls~n~l~~~~~~~----------l~~l~~L~~L~L  254 (768)
T 3rgz_A          193 DVD---VSRCVNLEFLDVSSNNFST-GIPF-LG---DCSALQHLDISGNKLSGDFSRA----------ISTCTELKLLNI  254 (768)
T ss_dssp             CCB---CTTCTTCCEEECCSSCCCS-CCCB-CT---TCCSCCEEECCSSCCCSCHHHH----------TTTCSSCCEEEC
T ss_pred             cCC---cccCCcCCEEECcCCcCCC-CCcc-cc---cCCCCCEEECcCCcCCCcccHH----------HhcCCCCCEEEC
Confidence             01   1255666666666654322 2233 22   5666666666666322222222          245666666666


Q ss_pred             ccCccccccccCcccccCCCCccEEEeccCCCce-eccccccCCccccccCCcceEEEeeccccccceecc--ccccccc
Q 039042          226 YDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFM-VRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFS--EDLLCKL  302 (526)
Q Consensus       226 ~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~~L  302 (526)
                      ++|.-...++..     .+++|++|++++|. +. .+|..+.     ..+++|++|++++|.+..   .+|  ...+++|
T Consensus       255 s~n~l~~~~~~~-----~l~~L~~L~L~~n~-l~~~ip~~~~-----~~~~~L~~L~Ls~n~l~~---~~p~~~~~l~~L  320 (768)
T 3rgz_A          255 SSNQFVGPIPPL-----PLKSLQYLSLAENK-FTGEIPDFLS-----GACDTLTGLDLSGNHFYG---AVPPFFGSCSLL  320 (768)
T ss_dssp             CSSCCEESCCCC-----CCTTCCEEECCSSE-EEESCCCCSC-----TTCTTCSEEECCSSEEEE---CCCGGGGGCTTC
T ss_pred             CCCcccCccCcc-----ccCCCCEEECcCCc-cCCccCHHHH-----hhcCcCCEEECcCCcCCC---ccchHHhcCCCc
Confidence            654322222221     45666666666652 33 3333321     134667777776555431   122  2345666


Q ss_pred             cEEEeeeCCcccccccchhHhhcCCCccEEEEe-ec-cccccCC------------------------CcCccccccceE
Q 039042          303 KCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GY-SDWLPKE------------------------KVENGMEVIIRR  356 (526)
Q Consensus       303 ~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~-~~~~~~~------------------------~~~~~~~~~L~~  356 (526)
                      ++|++++|....  .+|...+..+++|++|++. +. .+.+|..                        .+....+++|++
T Consensus       321 ~~L~L~~n~l~~--~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~  398 (768)
T 3rgz_A          321 ESLALSSNNFSG--ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE  398 (768)
T ss_dssp             CEEECCSSEEEE--ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCE
T ss_pred             cEEECCCCcccC--cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccE
Confidence            666666665443  4555556666666666666 32 1122211                        000012567777


Q ss_pred             EEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccc
Q 039042          357 VFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESC  435 (526)
Q Consensus       357 L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c  435 (526)
                      |++. +.+....+..+..+++|+.|++++|.....+|..+..+++|+.|++++|.-....+  ..+..+++|++|++++|
T Consensus       399 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~N  476 (768)
T 3rgz_A          399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP--QELMYVKTLETLILDFN  476 (768)
T ss_dssp             EECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECCSS
T ss_pred             EECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC--HHHcCCCCceEEEecCC
Confidence            7777 66666666677778888888888876555666667777888888888774322333  45667788888888886


Q ss_pred             cccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCccccCCCCCCCcccce
Q 039042          436 AMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTPVLHK  515 (526)
Q Consensus       436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~~L~~  515 (526)
                      .....++..            +..+++|++|++++|.....+|..  +..+++|++|++++|.-...+|.....+++|++
T Consensus       477 ~l~~~~p~~------------l~~l~~L~~L~L~~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  542 (768)
T 3rgz_A          477 DLTGEIPSG------------LSNCTNLNWISLSNNRLTGEIPKW--IGRLENLAILKLSNNSFSGNIPAELGDCRSLIW  542 (768)
T ss_dssp             CCCSCCCGG------------GGGCTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCE
T ss_pred             cccCcCCHH------------HhcCCCCCEEEccCCccCCcCChH--HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCE
Confidence            544344443            335788999999887644466654  667889999999988655577777777888999


Q ss_pred             EEec
Q 039042          516 VQLN  519 (526)
Q Consensus       516 l~l~  519 (526)
                      ++++
T Consensus       543 L~Ls  546 (768)
T 3rgz_A          543 LDLN  546 (768)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            8887

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.96  E-value=3e-28  Score=266.32  Aligned_cols=360  Identities=13%  Similarity=0.013  Sum_probs=198.8

Q ss_pred             hccccccceecccccccccccccccccccCCcccEEEEecCCCCCC-chhhhhhccCccc--ccccccchhhhccccccc
Q 039042           46 QLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALN-PSAESKRQRQEES--ANDMQSNELILEDNANIS  122 (526)
Q Consensus        46 ~l~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~-p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~  122 (526)
                      .+.++.+|+.++++++.+....   +...+++|++|++++|..... |.  ++++++|++  +.++.....++..     
T Consensus       173 ~~~~l~~L~~L~Ls~n~l~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~-----  242 (768)
T 3rgz_A          173 LSDGCGELKHLAISGNKISGDV---DVSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRA-----  242 (768)
T ss_dssp             HTTCCTTCCEEECCSSEEESCC---BCTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHH-----
T ss_pred             hhccCCCCCEEECCCCcccccC---CcccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHH-----
Confidence            4677888888888876554322   335788888888888877665 44  778888888  6665433333322     


Q ss_pred             chhhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEe
Q 039042          123 NTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIV  202 (526)
Q Consensus       123 ~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~  202 (526)
                       +..+++|++|++++|.++...   |.   ..+++|++|++++|.. +...|..+..  .+++|++|++++|.....++.
T Consensus       243 -l~~l~~L~~L~Ls~n~l~~~~---~~---~~l~~L~~L~L~~n~l-~~~ip~~~~~--~~~~L~~L~Ls~n~l~~~~p~  312 (768)
T 3rgz_A          243 -ISTCTELKLLNISSNQFVGPI---PP---LPLKSLQYLSLAENKF-TGEIPDFLSG--ACDTLTGLDLSGNHFYGAVPP  312 (768)
T ss_dssp             -TTTCSSCCEEECCSSCCEESC---CC---CCCTTCCEEECCSSEE-EESCCCCSCT--TCTTCSEEECCSSEEEECCCG
T ss_pred             -HhcCCCCCEEECCCCcccCcc---Cc---cccCCCCEEECcCCcc-CCccCHHHHh--hcCcCCEEECcCCcCCCccch
Confidence             112556666666666444211   11   1345555555555432 2112333331  234555555554422112221


Q ss_pred             ecchh-------------h-hcccc-cccccccceeecccCccccccccCcccccCCC-CccEEEeccCCCceecccccc
Q 039042          203 VDNQE-------------E-ERKNN-IVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFP-SLKELWISRCPEFMVRFKRTT  266 (526)
Q Consensus       203 ~~~~~-------------~-~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~-~L~~L~l~~c~~l~~~~~~~~  266 (526)
                      .+...             . ..+.. +..+++|++|+++++.-...+|..   +..++ +|++|++++|.--..++....
T Consensus       313 ~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~---l~~l~~~L~~L~Ls~N~l~~~~~~~~~  389 (768)
T 3rgz_A          313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES---LTNLSASLLTLDLSSNNFSGPILPNLC  389 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT---HHHHTTTCSEEECCSSEEEEECCTTTT
T ss_pred             HHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH---HHhhhcCCcEEEccCCCcCCCcChhhh
Confidence            11000             0 00000 134555555555544222233333   33443 555555555522222222221


Q ss_pred             CCccccccCCcceEEEeeccccccceecc--ccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-ec-ccccc
Q 039042          267 NDLTKKVFPNLEELIVDAEYIITNKFIFS--EDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GY-SDWLP  342 (526)
Q Consensus       267 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~-~~~~~  342 (526)
                      .    ..+++|+.|++++|.+..   .+|  ...+++|++|++++|....  .+|. .+..+++|+.|++. +. .+.+|
T Consensus       390 ~----~~~~~L~~L~L~~n~l~~---~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~-~l~~l~~L~~L~L~~n~l~~~~p  459 (768)
T 3rgz_A          390 Q----NPKNTLQELYLQNNGFTG---KIPPTLSNCSELVSLHLSFNYLSG--TIPS-SLGSLSKLRDLKLWLNMLEGEIP  459 (768)
T ss_dssp             C----STTCCCCEEECCSSEEEE---ECCGGGGGCTTCCEEECCSSEEES--CCCG-GGGGCTTCCEEECCSSCCCSCCC
T ss_pred             h----cccCCccEEECCCCcccc---ccCHHHhcCCCCCEEECcCCcccC--cccH-HHhcCCCCCEEECCCCcccCcCC
Confidence            1    125567777776655431   222  2356677777777765433  3333 56677788888777 33 22333


Q ss_pred             CCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHH
Q 039042          343 KEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIA  421 (526)
Q Consensus       343 ~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~  421 (526)
                      ..   ...+++|++|++. +.+....+..+..+++|+.|++++|.....+|..+..+++|++|++++|.-...+|  ..+
T Consensus       460 ~~---~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p--~~l  534 (768)
T 3rgz_A          460 QE---LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP--AEL  534 (768)
T ss_dssp             GG---GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC--GGG
T ss_pred             HH---HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC--HHH
Confidence            22   1566788888888 77776667777888888888888887666777777788888888888874333444  466


Q ss_pred             hhcccccEEEEccccccceecc
Q 039042          422 KTLVRLREMKIESCAMITEIVL  443 (526)
Q Consensus       422 ~~l~~L~~L~i~~c~~l~~~~~  443 (526)
                      ..+++|+.|++++|.....+|.
T Consensus       535 ~~l~~L~~L~Ls~N~l~g~ip~  556 (768)
T 3rgz_A          535 GDCRSLIWLDLNTNLFNGTIPA  556 (768)
T ss_dssp             GGCTTCCEEECCSSEEESBCCG
T ss_pred             cCCCCCCEEECCCCccCCcCCh
Confidence            7788888888888654444443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.96  E-value=1.7e-27  Score=254.20  Aligned_cols=422  Identities=13%  Similarity=0.050  Sum_probs=270.3

Q ss_pred             hccccccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhcccccccc
Q 039042           46 QLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANISN  123 (526)
Q Consensus        46 ~l~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~  123 (526)
                      .+.++.+|+.++++++.+..++.. ....+++|++|++++|.....++..++++++|++  +.++.. ..++.     ..
T Consensus        51 ~~~~l~~L~~L~Ls~n~l~~i~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l-~~~~~-----~~  123 (606)
T 3vq2_A           51 SFSNFSELQWLDLSRCEIETIEDK-AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL-ASLES-----FP  123 (606)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCC-CCSSS-----SC
T ss_pred             hccCCccCcEEeCCCCcccccCHH-HhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcc-ccccc-----cc
Confidence            567777888888887777666432 3356788888888888766664445778888888  555542 22221     11


Q ss_pred             hhhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCccccccccccccc----EEeeeccccccE
Q 039042          124 TLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQ----YIRIEKCHVLEE  199 (526)
Q Consensus       124 ~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~----~L~l~~~~~l~~  199 (526)
                      ++.+++|++|++++|.++....  |.. +..+++|++|++++|. ++.+.|..++   .+.+|+    +|++++| .+..
T Consensus       124 ~~~l~~L~~L~L~~n~l~~~~l--p~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~---~l~~L~~~l~~L~l~~n-~l~~  195 (606)
T 3vq2_A          124 IGQLITLKKLNVAHNFIHSCKL--PAY-FSNLTNLVHVDLSYNY-IQTITVNDLQ---FLRENPQVNLSLDMSLN-PIDF  195 (606)
T ss_dssp             CTTCTTCCEEECCSSCCCCCCC--CGG-GGTCTTCCEEECCSSC-CCEECTTTTH---HHHHCTTCCCEEECTTC-CCCE
T ss_pred             cCCCCCCCEEeCCCCcccceec--hHh-HhhcCCCCEEEccCCc-ceecChhhhh---hhhccccccceeeccCC-Ccce
Confidence            2347888888888887764211  333 6678888888888864 4444454443   222222    3444443 2222


Q ss_pred             EEeecch-----------------------------------------------------------------------hh
Q 039042          200 LIVVDNQ-----------------------------------------------------------------------EE  208 (526)
Q Consensus       200 l~~~~~~-----------------------------------------------------------------------~~  208 (526)
                      ++.....                                                                       ..
T Consensus       196 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~  275 (606)
T 3vq2_A          196 IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS  275 (606)
T ss_dssp             ECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCC
T ss_pred             eCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccc
Confidence            2211100                                                                       00


Q ss_pred             hcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecccc
Q 039042          209 ERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYII  288 (526)
Q Consensus       209 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  288 (526)
                      ...+.+..+++|++|+++++ .+..++ .   +..+++|++|++++|. +..+| ..       .+++|+.|+++++...
T Consensus       276 ~~~~~~~~l~~L~~L~l~~~-~~~~l~-~---l~~~~~L~~L~l~~n~-l~~lp-~~-------~l~~L~~L~l~~n~~~  341 (606)
T 3vq2_A          276 DDIVKFHCLANVSAMSLAGV-SIKYLE-D---VPKHFKWQSLSIIRCQ-LKQFP-TL-------DLPFLKSLTLTMNKGS  341 (606)
T ss_dssp             GGGGSCGGGTTCSEEEEESC-CCCCCC-C---CCTTCCCSEEEEESCC-CSSCC-CC-------CCSSCCEEEEESCSSC
T ss_pred             ccccccccCCCCCEEEecCc-cchhhh-h---ccccccCCEEEccccc-Ccccc-cC-------CCCccceeeccCCcCc
Confidence            00011234556666666653 334444 2   5566777777777773 35554 21       4777888888766332


Q ss_pred             ccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cCceee
Q 039042          289 TNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLKYI  366 (526)
Q Consensus       289 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~  366 (526)
                         ..++...+++|++|++++|.... .......+..+++|++|+++ +....++ ..+  ..+++|++|++. +.+...
T Consensus       342 ---~~~~~~~l~~L~~L~ls~n~l~~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~--~~l~~L~~L~l~~n~l~~~  414 (606)
T 3vq2_A          342 ---ISFKKVALPSLSYLDLSRNALSF-SGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANF--MGLEELQHLDFQHSTLKRV  414 (606)
T ss_dssp             ---EECCCCCCTTCCEEECCSSCEEE-EEECCHHHHCCSCCCEEECCSCSEEEEC-CCC--TTCTTCCEEECTTSEEEST
T ss_pred             ---cchhhccCCCCCEEECcCCccCC-CcchhhhhccCCcccEeECCCCccccch-hhc--cCCCCCCeeECCCCccCCc
Confidence               23355577888888888875433 01013366788899999888 4443344 222  567899999998 777777


Q ss_pred             cc-ccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccc
Q 039042          367 LK-QESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLAD  445 (526)
Q Consensus       367 ~~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~  445 (526)
                      .+ ..+..+++|+.|++++|......+..+..+++|++|++++| .+.....+..++.+++|++|++++|. +..++.. 
T Consensus       415 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-  491 (606)
T 3vq2_A          415 TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWG-  491 (606)
T ss_dssp             TTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTT-
T ss_pred             cChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCc-CCccChh-
Confidence            65 67788899999999998766666667788899999999987 45442112456788999999999875 4444322 


Q ss_pred             cCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCccccCCCCCCCc-ccceEEec
Q 039042          446 DDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTP-VLHKVQLN  519 (526)
Q Consensus       446 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~-~L~~l~l~  519 (526)
                                .+..+++|++|+++++ .+..+.... +..+++|++|++++|. ++.+|.....++ +|++++++
T Consensus       492 ----------~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~  553 (606)
T 3vq2_A          492 ----------VFDTLHRLQLLNMSHN-NLLFLDSSH-YNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLT  553 (606)
T ss_dssp             ----------TTTTCTTCCEEECCSS-CCSCEEGGG-TTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECC
T ss_pred             ----------hhcccccCCEEECCCC-cCCCcCHHH-ccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEcc
Confidence                      1335789999999986 455553332 6778999999999974 888888866676 59999988

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.96  E-value=1.4e-27  Score=254.75  Aligned_cols=358  Identities=11%  Similarity=0.028  Sum_probs=173.2

Q ss_pred             HhccccccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhccccccc
Q 039042           45 LQLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANIS  122 (526)
Q Consensus        45 ~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~  122 (526)
                      ..+.++.+|+.++++++.+...... ....+++|++|++++|.....++..++++++|++  +.++. +..+...     
T Consensus        51 ~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~-----  123 (606)
T 3t6q_A           51 TTFSRLINLTFLDLTRCQIYWIHED-TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG-ISSIDFI-----  123 (606)
T ss_dssp             TTSTTCTTCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC-CSCGGGS-----
T ss_pred             hHhccCccceEEECCCCccceeChh-hccCccccCeeeCCCCcccccChhhhcccccccEeeccccC-cccCCcc-----
Confidence            3566677777777777666554321 3356777777777777665554444667777777  44443 2222111     


Q ss_pred             chhhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCccccccccccccc--EEeeeccccccEE
Q 039042          123 NTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQ--YIRIEKCHVLEEL  200 (526)
Q Consensus       123 ~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~--~L~l~~~~~l~~l  200 (526)
                      ....+++|++|++++|.++.+....    +..+++|++|++++|. ++.+.|..++   .+++|+  +|++++| .+..+
T Consensus       124 ~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~-l~~~~~~~~~---~l~~L~~l~L~l~~n-~l~~~  194 (606)
T 3t6q_A          124 PLHNQKTLESLYLGSNHISSIKLPK----GFPTEKLKVLDFQNNA-IHYLSKEDMS---SLQQATNLSLNLNGN-DIAGI  194 (606)
T ss_dssp             CCTTCTTCCEEECCSSCCCCCCCCT----TCCCTTCCEEECCSSC-CCEECHHHHH---TTTTCCSEEEECTTC-CCCEE
T ss_pred             hhccCCcccEEECCCCcccccCccc----ccCCcccCEEEcccCc-ccccChhhhh---hhcccceeEEecCCC-ccCcc
Confidence            1123667777777777665431111    2246777777777653 3333344443   466666  5666665 33333


Q ss_pred             Eeecchhh---------------------------------------hc-ccccccc--cccceeecccCccccccccCc
Q 039042          201 IVVDNQEE---------------------------------------ER-KNNIVMF--PQLQYLKMYDLEKLTSFCTGD  238 (526)
Q Consensus       201 ~~~~~~~~---------------------------------------~~-~~~~~~l--~~L~~L~l~~~~~l~~~~~~~  238 (526)
                      +.......                                       .. ......+  .+|++|+++++ .+..++...
T Consensus       195 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n-~l~~~~~~~  273 (606)
T 3t6q_A          195 EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH-YFFNISSNT  273 (606)
T ss_dssp             CTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC-CCSSCCTTT
T ss_pred             ChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecC-ccCccCHHH
Confidence            22111000                                       00 0000001  14455555543 333333322


Q ss_pred             ccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCccccccc
Q 039042          239 VHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILS  318 (526)
Q Consensus       239 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  318 (526)
                        +..+++|++|++++| .+..+|..+      ..+++|++|++++|.+.. +.......+++|++|++++|....  .+
T Consensus       274 --~~~l~~L~~L~l~~n-~l~~lp~~l------~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~--~~  341 (606)
T 3t6q_A          274 --FHCFSGLQELDLTAT-HLSELPSGL------VGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRL--EL  341 (606)
T ss_dssp             --TTTCTTCSEEECTTS-CCSCCCSSC------CSCTTCCEEECTTCCCSB-GGGGCGGGCTTCSEEECCSCSSCC--BC
T ss_pred             --hccccCCCEEeccCC-ccCCCChhh------cccccCCEEECccCCcCc-CchhhhhccCcCCEEECCCCCccc--cc
Confidence              455666666666666 455555444      345666666666554421 111122345566666666654433  33


Q ss_pred             chhHhhcCCCccEEEEe-ecccccc--CCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccC-
Q 039042          319 LDDFLQRFPTLKVLQIE-GYSDWLP--KEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVP-  393 (526)
Q Consensus       319 ~~~~l~~l~~L~~L~l~-~~~~~~~--~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-  393 (526)
                      +...+..+++|++|+++ +......  ...  ...+++|++|++. +.+..+.+..+..+++|+.|++++|......+. 
T Consensus       342 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  419 (606)
T 3t6q_A          342 GTGCLENLENLRELDLSHDDIETSDCCNLQ--LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS  419 (606)
T ss_dssp             CSSTTTTCTTCCEEECCSSCCCEEEESTTT--TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred             chhhhhccCcCCEEECCCCccccccCcchh--cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence            44445556666666665 2211111  111  1344555555555 555555555555555555555555433222221 


Q ss_pred             CCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccc
Q 039042          394 SSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESC  435 (526)
Q Consensus       394 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c  435 (526)
                      .+..+++|++|++++| .+...+. ..+..+++|++|++++|
T Consensus       420 ~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~n  459 (606)
T 3t6q_A          420 PFQNLHLLKVLNLSHS-LLDISSE-QLFDGLPALQHLNLQGN  459 (606)
T ss_dssp             TTTTCTTCCEEECTTC-CCBTTCT-TTTTTCTTCCEEECTTC
T ss_pred             hhhCcccCCEEECCCC-ccCCcCH-HHHhCCCCCCEEECCCC
Confidence            1344455555555544 2222211 22334445555555443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=3e-27  Score=252.23  Aligned_cols=410  Identities=15%  Similarity=0.080  Sum_probs=276.2

Q ss_pred             ccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhcccccccchhhhh
Q 039042           51 EDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANISNTLFLE  128 (526)
Q Consensus        51 ~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~  128 (526)
                      ..++.++++++.+..++.. ....+++|++|++++|.....++..++++++|++  +.++......+..      +..++
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~------~~~l~  105 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNT-TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA------LSGPK  105 (606)
T ss_dssp             TTCCEEECTTCCCSEECTT-TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT------TSSCT
T ss_pred             CcCcEEEccCCccCcCChh-HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh------hcccc
Confidence            3688999999888877532 4567899999999999876665556889999999  7666433222222      22389


Q ss_pred             hhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhh
Q 039042          129 KLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEE  208 (526)
Q Consensus       129 ~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~  208 (526)
                      +|++|++++|.++.+-.. +   +..+++|++|++++|.. +.+.+..+.   .+++|++|++++| .+..++....   
T Consensus       106 ~L~~L~L~~n~i~~l~~~-~---~~~l~~L~~L~L~~n~l-~~~~~~~~~---~l~~L~~L~L~~n-~l~~~~~~~~---  173 (606)
T 3t6q_A          106 ALKHLFFIQTGISSIDFI-P---LHNQKTLESLYLGSNHI-SSIKLPKGF---PTEKLKVLDFQNN-AIHYLSKEDM---  173 (606)
T ss_dssp             TCCEEECTTSCCSCGGGS-C---CTTCTTCCEEECCSSCC-CCCCCCTTC---CCTTCCEEECCSS-CCCEECHHHH---
T ss_pred             cccEeeccccCcccCCcc-h---hccCCcccEEECCCCcc-cccCccccc---CCcccCEEEcccC-cccccChhhh---
Confidence            999999999987764111 2   55899999999999754 332222222   5899999999998 5555533211   


Q ss_pred             hcccccccccccc--eeecccCccccccccCcccccCCC-----------------------------------------
Q 039042          209 ERKNNIVMFPQLQ--YLKMYDLEKLTSFCTGDVHMLEFP-----------------------------------------  245 (526)
Q Consensus       209 ~~~~~~~~l~~L~--~L~l~~~~~l~~~~~~~~~~~~l~-----------------------------------------  245 (526)
                            +.+++|+  +|+++++ .+..++..   ....+                                         
T Consensus       174 ------~~l~~L~~l~L~l~~n-~l~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i  243 (606)
T 3t6q_A          174 ------SSLQQATNLSLNLNGN-DIAGIEPG---AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI  243 (606)
T ss_dssp             ------HTTTTCCSEEEECTTC-CCCEECTT---TTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCC
T ss_pred             ------hhhcccceeEEecCCC-ccCccChh---HhhhccccccccCCchhHHHHhhhccccchhheechhhcccccccc
Confidence                  3566666  5666653 33333322   11222                                         


Q ss_pred             -----------CccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccc--cccccccEEEeeeCCc
Q 039042          246 -----------SLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSE--DLLCKLKCLDVEFVDE  312 (526)
Q Consensus       246 -----------~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~  312 (526)
                                 +|+.|+++++ .+..+++..+     ..+++|+.|+++++.+.    .+|.  ..+++|++|++++|..
T Consensus       244 ~~~~~~~l~~~~L~~L~l~~n-~l~~~~~~~~-----~~l~~L~~L~l~~n~l~----~lp~~l~~l~~L~~L~l~~n~l  313 (606)
T 3t6q_A          244 SPAVFEGLCEMSVESINLQKH-YFFNISSNTF-----HCFSGLQELDLTATHLS----ELPSGLVGLSTLKKLVLSANKF  313 (606)
T ss_dssp             CGGGGGGGGGSEEEEEECTTC-CCSSCCTTTT-----TTCTTCSEEECTTSCCS----CCCSSCCSCTTCCEEECTTCCC
T ss_pred             ChhHhchhhcCceeEEEeecC-ccCccCHHHh-----ccccCCCEEeccCCccC----CCChhhcccccCCEEECccCCc
Confidence                       4555666655 4444444432     36789999999977663    3443  3578999999998764


Q ss_pred             ccccccchhHhhcCCCccEEEEe-ec-cccccCCCcCccccccceEEEec-cCceeec--cccccccCcccEEEEeccCC
Q 039042          313 LTTILSLDDFLQRFPTLKVLQIE-GY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYIL--KQESSIMNNLVILHVTNCHR  387 (526)
Q Consensus       313 l~~~~~~~~~l~~l~~L~~L~l~-~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~--~~~~~~l~~L~~L~l~~c~~  387 (526)
                      ..   .+...+..+++|++|++. +. ...++...+  ..+++|++|++. +.+..+.  +..+..+++|++|++++|..
T Consensus       314 ~~---~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  388 (606)
T 3t6q_A          314 EN---LCQISASNFPSLTHLSIKGNTKRLELGTGCL--ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP  388 (606)
T ss_dssp             SB---GGGGCGGGCTTCSEEECCSCSSCCBCCSSTT--TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSC
T ss_pred             Cc---CchhhhhccCcCCEEECCCCCcccccchhhh--hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcC
Confidence            43   334467889999999998 43 334444433  678999999999 8888776  56788899999999999865


Q ss_pred             cccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEe
Q 039042          388 LINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELK  467 (526)
Q Consensus       388 l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  467 (526)
                      ....+..+..+++|++|+++++ .+........+..+++|++|++++|......+..            +..+++|++|+
T Consensus       389 ~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------------~~~l~~L~~L~  455 (606)
T 3t6q_A          389 LSLKTEAFKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL------------FDGLPALQHLN  455 (606)
T ss_dssp             EEECTTTTTTCTTCSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT------------TTTCTTCCEEE
T ss_pred             CcCCHHHhcCCccCCeEECCCC-cCCCcccchhhhCcccCCEEECCCCccCCcCHHH------------HhCCCCCCEEE
Confidence            5555566778899999999987 4555443345678899999999997532222222            22467788888


Q ss_pred             cCCCccccc--cCCCCccccCCCccEEeEecCCCcccc-CCCCCCCcccceEEec
Q 039042          468 LLNLKSLRS--FYSGNRALNFPSLERLLVDDCTNMKGF-SRGELSTPVLHKVQLN  519 (526)
Q Consensus       468 l~~~~~l~~--l~~~~~~~~~~~L~~L~l~~C~~l~~l-~~~~~~~~~L~~l~l~  519 (526)
                      +++++ +..  ++....+..+++|++|++++|. ++.+ |.....+++|++|+++
T Consensus       456 L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls  508 (606)
T 3t6q_A          456 LQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFTSLKMMNHVDLS  508 (606)
T ss_dssp             CTTCB-CGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECC
T ss_pred             CCCCC-CCccccccchhhccCCCccEEECCCCc-cCccChhhhccccCCCEEECC
Confidence            87754 332  2222235567778888877763 4444 3444567777777776

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.95  E-value=1.2e-26  Score=245.65  Aligned_cols=410  Identities=13%  Similarity=0.055  Sum_probs=257.6

Q ss_pred             hccccccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhcccccccc
Q 039042           46 QLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANISN  123 (526)
Q Consensus        46 ~l~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~  123 (526)
                      .+.++.+|+.++++++.+..++.. ....+++|++|++++|.....|...++++++|++  +.++ .+..++..     .
T Consensus        47 ~~~~l~~L~~L~Ls~n~i~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~-----~  119 (570)
T 2z63_A           47 SFFSFPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENF-----P  119 (570)
T ss_dssp             TTTTCSSCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTC-----S
T ss_pred             HhhCCCCceEEECCCCcCCccCcc-cccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc-ccccCCCc-----c
Confidence            455666677777776666555432 2345677777777777654445445666777776  4443 22222221     1


Q ss_pred             hhhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccc----cEEeeeccccccE
Q 039042          124 TLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRL----QYIRIEKCHVLEE  199 (526)
Q Consensus       124 ~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L----~~L~l~~~~~l~~  199 (526)
                      ++.+++|++|++++|.++.+-  .|.+ +..+++|++|++++|. ++.+.|..+.   .+++|    ++|++++| .+..
T Consensus       120 ~~~l~~L~~L~L~~n~l~~~~--lp~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~---~l~~L~~~~~~L~l~~n-~l~~  191 (570)
T 2z63_A          120 IGHLKTLKELNVAHNLIQSFK--LPEY-FSNLTNLEHLDLSSNK-IQSIYCTDLR---VLHQMPLLNLSLDLSLN-PMNF  191 (570)
T ss_dssp             CTTCTTCCEEECCSSCCCCCC--CCGG-GGGCTTCCEEECTTSC-CCEECGGGGH---HHHTCTTCCCEEECTTC-CCCE
T ss_pred             ccccccccEEecCCCccceec--Chhh-hcccCCCCEEeCcCCc-cceecHHHcc---chhccchhhhhcccCCC-Ccee
Confidence            223667777777777655321  1333 5567777777777653 3344344433   45555    56666665 3333


Q ss_pred             EEeecchhhhcccccccccccceeecccC---------------------------------------------------
Q 039042          200 LIVVDNQEEERKNNIVMFPQLQYLKMYDL---------------------------------------------------  228 (526)
Q Consensus       200 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~---------------------------------------------------  228 (526)
                      ++...          ....+|++|+++++                                                   
T Consensus       192 ~~~~~----------~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~  261 (570)
T 2z63_A          192 IQPGA----------FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE  261 (570)
T ss_dssp             ECTTT----------TTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEE
T ss_pred             cCHHH----------hccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhh
Confidence            32211          11123444444332                                                   


Q ss_pred             ------ccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccc
Q 039042          229 ------EKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKL  302 (526)
Q Consensus       229 ------~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L  302 (526)
                            ..+......  .+..+++|++|++++| .+..++..+      ..+ +|++|++++|.+.    .+|...+++|
T Consensus       262 l~l~~~~~~~~~~~~--~~~~l~~L~~L~l~~~-~l~~l~~~~------~~~-~L~~L~l~~n~~~----~l~~~~l~~L  327 (570)
T 2z63_A          262 FRLAYLDYYLDDIID--LFNCLTNVSSFSLVSV-TIERVKDFS------YNF-GWQHLELVNCKFG----QFPTLKLKSL  327 (570)
T ss_dssp             EEEEETTEEESCSTT--TTGGGTTCSEEEEESC-EECSCCBCC------SCC-CCSEEEEESCBCS----SCCBCBCSSC
T ss_pred             hhhhcchhhhhhchh--hhcCcCcccEEEecCc-cchhhhhhh------ccC-CccEEeeccCccc----ccCccccccc
Confidence                  111111111  1556788999999888 566666554      345 8999999977663    4666778899


Q ss_pred             cEEEeeeCCcccccccchhHhhcCCCccEEEEe-ecccccc--CCCcCccccccceEEEec-cCceeeccccccccCccc
Q 039042          303 KCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLP--KEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLV  378 (526)
Q Consensus       303 ~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~--~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~  378 (526)
                      ++|+++++....  .++.   ..+++|++|+++ +......  ...  ...+++|++|++. +.+..+++. +..+++|+
T Consensus       328 ~~L~l~~n~~~~--~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~  399 (570)
T 2z63_A          328 KRLTFTSNKGGN--AFSE---VDLPSLEFLDLSRNGLSFKGCCSQS--DFGTTSLKYLDLSFNGVITMSSN-FLGLEQLE  399 (570)
T ss_dssp             CEEEEESCBSCC--BCCC---CBCTTCCEEECCSSCCBEEEEEEHH--HHTCSCCCEEECCSCSEEEEEEE-EETCTTCC
T ss_pred             CEEeCcCCcccc--cccc---ccCCCCCEEeCcCCccCcccccccc--ccccCccCEEECCCCcccccccc-ccccCCCC
Confidence            999998877554  3332   678999999998 4322111  111  1456899999999 888887665 78889999


Q ss_pred             EEEEeccCCccccc-CCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEcccccc-ceecccccCCcccccCCC
Q 039042          379 ILHVTNCHRLINLV-PSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMI-TEIVLADDDDDHDAAKDE  456 (526)
Q Consensus       379 ~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l-~~~~~~~~~~~~~~~~~~  456 (526)
                      .|++++|......+ ..+..+++|++|++++|. +..... ..+..+++|++|++++|... ..++..            
T Consensus       400 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p~~------------  465 (570)
T 2z63_A          400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDI------------  465 (570)
T ss_dssp             EEECTTSEEESCTTSCTTTTCTTCCEEECTTSC-CEECCT-TTTTTCTTCCEEECTTCEEGGGEECSC------------
T ss_pred             EEEccCCccccccchhhhhcCCCCCEEeCcCCc-ccccch-hhhhcCCcCcEEECcCCcCccccchhh------------
Confidence            99999875443333 246778999999999884 444332 45677899999999997633 234433            


Q ss_pred             eeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCccccCCC-CCCCcccceEEec
Q 039042          457 VIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRG-ELSTPVLHKVQLN  519 (526)
Q Consensus       457 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~-~~~~~~L~~l~l~  519 (526)
                      +..+++|++|++++| .++.++... +..+++|++|++++| +++.++.. ...+++|++++++
T Consensus       466 ~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~  526 (570)
T 2z63_A          466 FTELRNLTFLDLSQC-QLEQLSPTA-FNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLH  526 (570)
T ss_dssp             CTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECC
T ss_pred             hhcccCCCEEECCCC-ccccCChhh-hhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEec
Confidence            335789999999986 466654332 667899999999987 57777654 4568999999988

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.94  E-value=4e-26  Score=243.55  Aligned_cols=390  Identities=14%  Similarity=0.065  Sum_probs=275.4

Q ss_pred             Hhccccccceeccccccccccc-ccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccch-hhhccccc
Q 039042           45 LQLQGIEDLELHELQEQDVNYF-ANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNE-LILEDNAN  120 (526)
Q Consensus        45 ~~l~~~~~L~~l~l~~~~~~~~-~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~-~~~~~~~~  120 (526)
                      ..+.++.+|+.++++++.+... |.  ....+++|++|++++|.....|...++++++|++  +.++.... .++.    
T Consensus        74 ~~~~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~----  147 (606)
T 3vq2_A           74 KAWHGLHHLSNLILTGNPIQSFSPG--SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA----  147 (606)
T ss_dssp             TTTTTCTTCCEEECTTCCCCCCCTT--SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG----
T ss_pred             HHhhchhhcCEeECCCCcccccChh--hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH----
Confidence            4577889999999999888777 44  4567999999999999987776445889999999  66664322 2222    


Q ss_pred             ccchhhhhhhhhhcccccccccccccccccccccCCccc----EEEeccCCCceecCCcccc------------------
Q 039042          121 ISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLT----HLTLYNCMNLRCLFSSCTV------------------  178 (526)
Q Consensus       121 ~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~----~L~L~~c~~l~~l~p~~l~------------------  178 (526)
                        .++.+++|++|++++|.++.+....    +..+++|+    +|++++|. ++.+.+..+.                  
T Consensus       148 --~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~n~~~~~~  220 (606)
T 3vq2_A          148 --YFSNLTNLVHVDLSYNYIQTITVND----LQFLRENPQVNLSLDMSLNP-IDFIQDQAFQGIKLHELTLRGNFNSSNI  220 (606)
T ss_dssp             --GGGTCTTCCEEECCSSCCCEECTTT----THHHHHCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESCCSCHHH
T ss_pred             --hHhhcCCCCEEEccCCcceecChhh----hhhhhccccccceeeccCCC-cceeCcccccCceeeeeeccCCccchhH
Confidence              2334899999999999777542211    22222222    44444432 2222111111                  


Q ss_pred             -----------------------------------------------------------cccccccccEEeeeccccccE
Q 039042          179 -----------------------------------------------------------SNNSFVRLQYIRIEKCHVLEE  199 (526)
Q Consensus       179 -----------------------------------------------------------~l~~l~~L~~L~l~~~~~l~~  199 (526)
                                                                                 .++.+++|++|+++++ .+..
T Consensus       221 ~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~  299 (606)
T 3vq2_A          221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV-SIKY  299 (606)
T ss_dssp             HHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESC-CCCC
T ss_pred             HHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCc-cchh
Confidence                                                                       0113344444444444 2333


Q ss_pred             EEeecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcce
Q 039042          200 LIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEE  279 (526)
Q Consensus       200 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~  279 (526)
                      ++           .+..+++|++|++++|.. ..+| .   + .+++|++|++++|..+...+  +      ..+++|+.
T Consensus       300 l~-----------~l~~~~~L~~L~l~~n~l-~~lp-~---~-~l~~L~~L~l~~n~~~~~~~--~------~~l~~L~~  354 (606)
T 3vq2_A          300 LE-----------DVPKHFKWQSLSIIRCQL-KQFP-T---L-DLPFLKSLTLTMNKGSISFK--K------VALPSLSY  354 (606)
T ss_dssp             CC-----------CCCTTCCCSEEEEESCCC-SSCC-C---C-CCSSCCEEEEESCSSCEECC--C------CCCTTCCE
T ss_pred             hh-----------hccccccCCEEEcccccC-cccc-c---C-CCCccceeeccCCcCccchh--h------ccCCCCCE
Confidence            33           236788999999999754 7776 3   4 89999999999996665442  2      36899999


Q ss_pred             EEEeeccccccce--eccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-ec-cccccCCCcCccccccce
Q 039042          280 LIVDAEYIITNKF--IFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GY-SDWLPKEKVENGMEVIIR  355 (526)
Q Consensus       280 L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~-~~~~~~~~~~~~~~~~L~  355 (526)
                      |++++|.+.. ..  ......+++|++|++++|...   .++ ..+..+++|+.|++. +. ....+...+  ..+++|+
T Consensus       355 L~ls~n~l~~-~~~~~~~~~~~~~L~~L~L~~n~l~---~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~  427 (606)
T 3vq2_A          355 LDLSRNALSF-SGCCSYSDLGTNSLRHLDLSFNGAI---IMS-ANFMGLEELQHLDFQHSTLKRVTEFSAF--LSLEKLL  427 (606)
T ss_dssp             EECCSSCEEE-EEECCHHHHCCSCCCEEECCSCSEE---EEC-CCCTTCTTCCEEECTTSEEESTTTTTTT--TTCTTCC
T ss_pred             EECcCCccCC-CcchhhhhccCCcccEeECCCCccc---cch-hhccCCCCCCeeECCCCccCCccChhhh--hccccCC
Confidence            9999886632 21  112246789999999998743   344 467789999999999 44 333332333  6789999


Q ss_pred             EEEec-cCceeeccccccccCcccEEEEeccCCccc-ccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEc
Q 039042          356 RVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLIN-LVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIE  433 (526)
Q Consensus       356 ~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~-l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~  433 (526)
                      +|+++ +.+....+..+..+++|++|++++|..... ++..+..+++|++|++++| +++..++ ..+..+++|++|+++
T Consensus       428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls  505 (606)
T 3vq2_A          428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISW-GVFDTLHRLQLLNMS  505 (606)
T ss_dssp             EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECC
T ss_pred             EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccCh-hhhcccccCCEEECC
Confidence            99999 888888888899999999999999965553 5667888999999999998 5666543 356789999999999


Q ss_pred             ccccccee-cccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCC-CccEEeEecCC
Q 039042          434 SCAMITEI-VLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFP-SLERLLVDDCT  498 (526)
Q Consensus       434 ~c~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~-~L~~L~l~~C~  498 (526)
                      +|. +..+ +..            +..+++|++|+++++ .++.+|..  +..++ +|++|++++++
T Consensus       506 ~N~-l~~~~~~~------------~~~l~~L~~L~l~~N-~l~~~p~~--~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          506 HNN-LLFLDSSH------------YNQLYSLSTLDCSFN-RIETSKGI--LQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             SSC-CSCEEGGG------------TTTCTTCCEEECTTS-CCCCEESC--GGGSCTTCCEEECCSCC
T ss_pred             CCc-CCCcCHHH------------ccCCCcCCEEECCCC-cCcccCHh--HhhhcccCcEEEccCCC
Confidence            975 4444 433            235789999999986 58888876  66776 69999999865

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.94  E-value=1.4e-25  Score=242.64  Aligned_cols=187  Identities=12%  Similarity=0.105  Sum_probs=93.7

Q ss_pred             HhhcCCCccEEEEe-ec-cccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCC--cccccCCCc
Q 039042          322 FLQRFPTLKVLQIE-GY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHR--LINLVPSST  396 (526)
Q Consensus       322 ~l~~l~~L~~L~l~-~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~--l~~l~~~~~  396 (526)
                      .+..+++|+.|+++ +. ...++...+  ..+++|++|++. +.+..+.+..+..+++|+.|+++++..  +...|..+.
T Consensus       400 ~~~~l~~L~~L~L~~N~l~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~  477 (680)
T 1ziw_A          400 AFSWLGHLEVLDLGLNEIGQELTGQEW--RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ  477 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCEEECCSGGG--TTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred             hhhCCCCCCEEeCCCCcCccccCcccc--cCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence            45566666666666 32 222332222  455666676666 666666666666666666666666542  234445556


Q ss_pred             cCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccc
Q 039042          397 SFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRS  476 (526)
Q Consensus       397 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  476 (526)
                      .+++|+.|+++++ +++.++. ..+..+++|++|+++++. +..++.......   ....+..+++|+.|+++++ .++.
T Consensus       478 ~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~---~~~~~~~l~~L~~L~L~~N-~l~~  550 (680)
T 1ziw_A          478 PLRNLTILDLSNN-NIANIND-DMLEGLEKLEILDLQHNN-LARLWKHANPGG---PIYFLKGLSHLHILNLESN-GFDE  550 (680)
T ss_dssp             TCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CGGGGSTTSTTS---CCCTTTTCTTCCEEECCSS-CCCC
T ss_pred             cCCCCCEEECCCC-CCCcCCh-hhhccccccCEEeCCCCC-ccccchhhccCC---cchhhcCCCCCCEEECCCC-CCCC
Confidence            6677777777665 4555442 234566677777776643 333321100000   0001223455555555542 3444


Q ss_pred             cCCCCccccCCCccEEeEecCCCccccCCCC-CCCcccceEEec
Q 039042          477 FYSGNRALNFPSLERLLVDDCTNMKGFSRGE-LSTPVLHKVQLN  519 (526)
Q Consensus       477 l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~-~~~~~L~~l~l~  519 (526)
                      +|... +..+++|++|++++ .+++.+|.+. ..+++|+.|+++
T Consensus       551 i~~~~-~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~  592 (680)
T 1ziw_A          551 IPVEV-FKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQ  592 (680)
T ss_dssp             CCTTT-TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCHHH-cccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECC
Confidence            44432 34455555555544 2344444432 234444444444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.94  E-value=1.5e-26  Score=243.83  Aligned_cols=191  Identities=19%  Similarity=0.221  Sum_probs=143.5

Q ss_pred             cccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-ec-cccccCCCcCccccccceEEEec-cCceeecc--ccccc
Q 039042          299 LCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILK--QESSI  373 (526)
Q Consensus       299 ~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~--~~~~~  373 (526)
                      .++|+.|+++++. ++  .+|...++.+++|++|+++ +. .+.++........+++|++|+++ +.+..++.  ..+..
T Consensus       309 ~~~L~~L~l~~n~-l~--~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  385 (549)
T 2z81_A          309 LEKVKRITVENSK-VF--LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT  385 (549)
T ss_dssp             STTCCEEEEESSC-CC--CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGG
T ss_pred             cccceEEEeccCc-cc--cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhc
Confidence            3567888887765 44  5777777789999999999 44 33222111111567899999999 88887754  45778


Q ss_pred             cCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCccccc
Q 039042          374 MNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAA  453 (526)
Q Consensus       374 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~  453 (526)
                      +++|+.|++++| .+..+|..+..+++|++|+++++ +++.++..    ..++|+.|++++|. +..++.          
T Consensus       386 l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N-~l~~l~~~----~~~~L~~L~Ls~N~-l~~~~~----------  448 (549)
T 2z81_A          386 LKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSST-GIRVVKTC----IPQTLEVLDVSNNN-LDSFSL----------  448 (549)
T ss_dssp             CTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTS-CCSCCCTT----SCTTCSEEECCSSC-CSCCCC----------
T ss_pred             CCCCCEEECCCC-CCccCChhhcccccccEEECCCC-Ccccccch----hcCCceEEECCCCC-hhhhcc----------
Confidence            999999999998 56678887888899999999998 56665521    12689999999864 554431          


Q ss_pred             CCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCccccCCC-CCCCcccceEEec
Q 039042          454 KDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRG-ELSTPVLHKVQLN  519 (526)
Q Consensus       454 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~-~~~~~~L~~l~l~  519 (526)
                           .+++|++|+++++ .++.+|..   ..+++|++|++++| +++.++.. ...+++|++++++
T Consensus       449 -----~l~~L~~L~Ls~N-~l~~ip~~---~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~  505 (549)
T 2z81_A          449 -----FLPRLQELYISRN-KLKTLPDA---SLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLH  505 (549)
T ss_dssp             -----CCTTCCEEECCSS-CCSSCCCG---GGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECC
T ss_pred             -----cCChhcEEECCCC-ccCcCCCc---ccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEec
Confidence                 4789999999985 67888764   46899999999996 67777765 4678999999998

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=2.1e-26  Score=246.10  Aligned_cols=341  Identities=9%  Similarity=0.024  Sum_probs=190.8

Q ss_pred             cccCCcccEEEEecCCCCC------------------Cchhhhh--hccCccc--ccccccchhhhcccccccchhhhhh
Q 039042           72 RVGSSQLKFLGIHGCRDAL------------------NPSAESK--RQRQEES--ANDMQSNELILEDNANISNTLFLEK  129 (526)
Q Consensus        72 ~~~l~~L~~L~L~~c~~~~------------------~p~~~l~--~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~~  129 (526)
                      .+.+++|++|++++|....                  .|.. ++  ++++|++  +.+|.....++..      ++.+++
T Consensus       202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~------l~~l~~  274 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTF------LKALPE  274 (636)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTT------TTTCSS
T ss_pred             HhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHH------HhcCCC
Confidence            3467888888888888666                  4443 44  6777777  6666555444432      223677


Q ss_pred             hhhhcccccc-ccc--ccccccccccccC------CcccEEEeccCCCceecCCc--ccccccccccccEEeeecccccc
Q 039042          130 LEKLELRSIN-IER--IWRNQVAAMTCGI------QNLTHLTLYNCMNLRCLFSS--CTVSNNSFVRLQYIRIEKCHVLE  198 (526)
Q Consensus       130 L~~L~L~~~~-l~~--~~~~~~~~~~~~l------~~L~~L~L~~c~~l~~l~p~--~l~~l~~l~~L~~L~l~~~~~l~  198 (526)
                      |++|++++|. ++.  +    |.+ ++.+      ++|++|++++|... .+ |.  .+.   .+++|++|++++| .+.
T Consensus       275 L~~L~Ls~n~~l~~~~l----p~~-~~~L~~~~~l~~L~~L~L~~n~l~-~i-p~~~~l~---~l~~L~~L~L~~N-~l~  343 (636)
T 4eco_A          275 MQLINVACNRGISGEQL----KDD-WQALADAPVGEKIQIIYIGYNNLK-TF-PVETSLQ---KMKKLGMLECLYN-QLE  343 (636)
T ss_dssp             CCEEECTTCTTSCHHHH----HHH-HHHHHHSGGGGTCCEEECCSSCCS-SC-CCHHHHT---TCTTCCEEECCSC-CCE
T ss_pred             CCEEECcCCCCCccccc----hHH-HHhhhccccCCCCCEEECCCCcCC-cc-Cchhhhc---cCCCCCEEeCcCC-cCc
Confidence            7777777775 553  2    222 3333      77777777776433 33 54  444   6777777777777 333


Q ss_pred             -EEEeecchhhhcccccccccccceeecccCccccccccCcccccCCCC-ccEEEeccCCCceeccccccCCccccccCC
Q 039042          199 -ELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPS-LKELWISRCPEFMVRFKRTTNDLTKKVFPN  276 (526)
Q Consensus       199 -~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~-L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~  276 (526)
                       .++ .+          +.+++|++|+++++ .+..+|..   +..+++ |++|++++| .+..+|..+..    ..+++
T Consensus       344 g~ip-~~----------~~l~~L~~L~L~~N-~l~~lp~~---l~~l~~~L~~L~Ls~N-~l~~lp~~~~~----~~l~~  403 (636)
T 4eco_A          344 GKLP-AF----------GSEIKLASLNLAYN-QITEIPAN---FCGFTEQVENLSFAHN-KLKYIPNIFDA----KSVSV  403 (636)
T ss_dssp             EECC-CC----------EEEEEESEEECCSS-EEEECCTT---SEEECTTCCEEECCSS-CCSSCCSCCCT----TCSSC
T ss_pred             cchh-hh----------CCCCCCCEEECCCC-ccccccHh---hhhhcccCcEEEccCC-cCcccchhhhh----cccCc
Confidence             555 32          46777777777764 45566555   666777 777777777 45556554322    23446


Q ss_pred             cceEEEeeccccccc-eecc---cc--ccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCc-
Q 039042          277 LEELIVDAEYIITNK-FIFS---ED--LLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVEN-  348 (526)
Q Consensus       277 L~~L~l~~~~~~~~~-~~~~---~~--~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~-  348 (526)
                      |+.|++++|.+.... ..++   ..  .+++|++|++++|.. +  .+|...+..+++|++|+++.+ ...+|...+.. 
T Consensus       404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l-~--~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~  480 (636)
T 4eco_A          404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI-S--KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE  480 (636)
T ss_dssp             EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC-C--SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEET
T ss_pred             cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc-C--cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccc
Confidence            777777766553211 1111   00  334677777777543 3  356556666777777777733 33444333210 


Q ss_pred             ----cccccceEEEec-cCceeeccccc-cccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCC-----C-ccccc
Q 039042          349 ----GMEVIIRRVFRC-YDLKYILKQES-SIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCN-----G-LKNVL  416 (526)
Q Consensus       349 ----~~~~~L~~L~l~-~~l~~~~~~~~-~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~-----~-l~~~~  416 (526)
                          ..+++|++|+++ +.+..++.... ..+++|+.|++++|.. ..+|..+..+++|+.|++++++     + ...+|
T Consensus       481 ~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l-~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p  559 (636)
T 4eco_A          481 NENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP  559 (636)
T ss_dssp             TEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCC-SSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred             cccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCC-CCcChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence                112266666666 66665543322 2566666666666533 2355555566666666664321     1 12222


Q ss_pred             chHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCC
Q 039042          417 TFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNL  471 (526)
Q Consensus       417 ~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  471 (526)
                        ..+..+++|++|++++|. +..+|..              .+++|+.|+++++
T Consensus       560 --~~l~~l~~L~~L~Ls~N~-l~~ip~~--------------~~~~L~~L~Ls~N  597 (636)
T 4eco_A          560 --EGITLCPSLTQLQIGSND-IRKVNEK--------------ITPNISVLDIKDN  597 (636)
T ss_dssp             --TTGGGCSSCCEEECCSSC-CCBCCSC--------------CCTTCCEEECCSC
T ss_pred             --HHHhcCCCCCEEECCCCc-CCccCHh--------------HhCcCCEEECcCC
Confidence              344456666666666643 3444432              1256666666654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.94  E-value=3.2e-26  Score=249.43  Aligned_cols=344  Identities=9%  Similarity=0.001  Sum_probs=195.0

Q ss_pred             cccCCcccEEEEecCCCCC------------------Cchhh-hhhccCccc--ccccccchhhhcccccccchhhhhhh
Q 039042           72 RVGSSQLKFLGIHGCRDAL------------------NPSAE-SKRQRQEES--ANDMQSNELILEDNANISNTLFLEKL  130 (526)
Q Consensus        72 ~~~l~~L~~L~L~~c~~~~------------------~p~~~-l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~~L  130 (526)
                      .+.+++|++|+|++|....                  .|..+ +.++++|++  +.+|.....++..      +..+++|
T Consensus       444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~------l~~L~~L  517 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF------LYDLPEL  517 (876)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG------GGGCSSC
T ss_pred             HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH------HhCCCCC
Confidence            3567888888888888776                  45442 237777777  6666555444432      2237777


Q ss_pred             hhhcccccc-ccc--cccccccc------ccccCCcccEEEeccCCCceecCCc--ccccccccccccEEeeeccccccE
Q 039042          131 EKLELRSIN-IER--IWRNQVAA------MTCGIQNLTHLTLYNCMNLRCLFSS--CTVSNNSFVRLQYIRIEKCHVLEE  199 (526)
Q Consensus       131 ~~L~L~~~~-l~~--~~~~~~~~------~~~~l~~L~~L~L~~c~~l~~l~p~--~l~~l~~l~~L~~L~l~~~~~l~~  199 (526)
                      +.|++++|. ++.  +    |.+      .+..+++|++|++++|... .+ |.  .+.   .+++|++|++++| .+..
T Consensus       518 ~~L~Ls~N~~lsg~~i----P~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~i-p~~~~l~---~L~~L~~L~Ls~N-~l~~  587 (876)
T 4ecn_A          518 QSLNIACNRGISAAQL----KADWTRLADDEDTGPKIQIFYMGYNNLE-EF-PASASLQ---KMVKLGLLDCVHN-KVRH  587 (876)
T ss_dssp             CEEECTTCTTSCHHHH----HHHHHHHHHCTTTTTTCCEEECCSSCCC-BC-CCHHHHT---TCTTCCEEECTTS-CCCB
T ss_pred             CEEECcCCCCcccccc----hHHHHhhhhcccccCCccEEEeeCCcCC-cc-CChhhhh---cCCCCCEEECCCC-Cccc
Confidence            777777775 553  2    211      0123447777777776433 43 54  444   6777777777777 4445


Q ss_pred             EEeecchhhhcccccccccccceeecccCccccccccCcccccCCCC-ccEEEeccCCCceeccccccCCccccccCCcc
Q 039042          200 LIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPS-LKELWISRCPEFMVRFKRTTNDLTKKVFPNLE  278 (526)
Q Consensus       200 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~-L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~  278 (526)
                      +| .+          +.+++|++|+++++ .+..+|..   +..+++ |++|++++| .+..+|..+..    ...++|+
T Consensus       588 lp-~~----------~~L~~L~~L~Ls~N-~l~~lp~~---l~~l~~~L~~L~Ls~N-~L~~lp~~~~~----~~~~~L~  647 (876)
T 4ecn_A          588 LE-AF----------GTNVKLTDLKLDYN-QIEEIPED---FCAFTDQVEGLGFSHN-KLKYIPNIFNA----KSVYVMG  647 (876)
T ss_dssp             CC-CC----------CTTSEESEEECCSS-CCSCCCTT---SCEECTTCCEEECCSS-CCCSCCSCCCT----TCSSCEE
T ss_pred             ch-hh----------cCCCcceEEECcCC-ccccchHH---HhhccccCCEEECcCC-CCCcCchhhhc----cccCCCC
Confidence            55 22          56777777777764 34566555   666777 777777777 45556544322    2234477


Q ss_pred             eEEEeeccccccceecccc----ccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCc-----
Q 039042          279 ELIVDAEYIITNKFIFSED----LLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVEN-----  348 (526)
Q Consensus       279 ~L~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~-----  348 (526)
                      .|++++|.+...+..++..    ..++|+.|++++|...   .+|...+..+++|+.|+++ +....+|...+..     
T Consensus       648 ~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~---~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l  724 (876)
T 4ecn_A          648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ---KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY  724 (876)
T ss_dssp             EEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC---SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCC
T ss_pred             EEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC---ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccc
Confidence            7777776664322222211    2346777777776533   4666666677777777777 3333444333210     


Q ss_pred             cccccceEEEec-cCceeeccccc-cccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCC-----Cc-ccccchHH
Q 039042          349 GMEVIIRRVFRC-YDLKYILKQES-SIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCN-----GL-KNVLTFSI  420 (526)
Q Consensus       349 ~~~~~L~~L~l~-~~l~~~~~~~~-~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~-----~l-~~~~~~~~  420 (526)
                      ..+++|++|+++ +.+..++.... ..+++|+.|++++|. +..+|..+..+++|+.|++++++     ++ ..+|  ..
T Consensus       725 ~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip--~~  801 (876)
T 4ecn_A          725 KNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP--TG  801 (876)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCC--TT
T ss_pred             cccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCcccccccccCh--HH
Confidence            123366666666 66665543222 256666666666653 33355555566666666665422     11 1222  34


Q ss_pred             HhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCc
Q 039042          421 AKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLK  472 (526)
Q Consensus       421 ~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  472 (526)
                      +..+++|+.|++++|. +..+|..              .+++|+.|++++++
T Consensus       802 l~~L~~L~~L~Ls~N~-L~~Ip~~--------------l~~~L~~LdLs~N~  838 (876)
T 4ecn_A          802 ITTCPSLIQLQIGSND-IRKVDEK--------------LTPQLYILDIADNP  838 (876)
T ss_dssp             GGGCSSCCEEECCSSC-CCBCCSC--------------CCSSSCEEECCSCT
T ss_pred             HhcCCCCCEEECCCCC-CCccCHh--------------hcCCCCEEECCCCC
Confidence            4556666666666643 3545443              12566666666543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.94  E-value=1.9e-25  Score=241.59  Aligned_cols=433  Identities=14%  Similarity=0.081  Sum_probs=220.1

Q ss_pred             hccccccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhcccccccc
Q 039042           46 QLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANISN  123 (526)
Q Consensus        46 ~l~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~  123 (526)
                      .+.++.+|+.++++++.+...+.. ....+++|++|++++|.....|...++++++|++  +.++. +..++..     .
T Consensus        44 ~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~-----~  116 (680)
T 1ziw_A           44 NFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNN-----P  116 (680)
T ss_dssp             GGGGGTTCSEEECCSSCCCCCCTT-HHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSC-----T
T ss_pred             HHhCCCcCcEEECCCCccCccCHH-HHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc-cCccChh-----H
Confidence            456666777777776665554321 2345677777777777655556555667777777  44443 2222211     1


Q ss_pred             hhhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEee
Q 039042          124 TLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVV  203 (526)
Q Consensus       124 ~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~  203 (526)
                      ++.+++|++|++++|.++....   .. +..+++|++|++++|. ++.+.|..+. ...+++|++|++++| .+..++..
T Consensus       117 ~~~l~~L~~L~Ls~n~l~~~~~---~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~-~~~~~~L~~L~L~~n-~l~~~~~~  189 (680)
T 1ziw_A          117 FVKQKNLITLDLSHNGLSSTKL---GT-QVQLENLQELLLSNNK-IQALKSEELD-IFANSSLKKLELSSN-QIKEFSPG  189 (680)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCC---CS-SSCCTTCCEEECCSSC-CCCBCHHHHG-GGTTCEESEEECTTC-CCCCBCTT
T ss_pred             ccccCCCCEEECCCCcccccCc---hh-hcccccCCEEEccCCc-ccccCHHHhh-ccccccccEEECCCC-cccccChh
Confidence            2235666666666665543311   11 3356666666666653 2332232221 112355666666555 22222111


Q ss_pred             cchh-----------------------------------------hhc-cccccccc--ccceeecccCccccccccCcc
Q 039042          204 DNQE-----------------------------------------EER-KNNIVMFP--QLQYLKMYDLEKLTSFCTGDV  239 (526)
Q Consensus       204 ~~~~-----------------------------------------~~~-~~~~~~l~--~L~~L~l~~~~~l~~~~~~~~  239 (526)
                      ....                                         ... ...+..++  +|++|+++++ .+..++... 
T Consensus       190 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n-~l~~~~~~~-  267 (680)
T 1ziw_A          190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDS-  267 (680)
T ss_dssp             GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTS-CCCEECTTT-
T ss_pred             hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCC-CcCccCccc-
Confidence            0000                                         000 00012222  3666666654 334433221 


Q ss_pred             cccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccc--------cceeccccccccccEEEeeeCC
Q 039042          240 HMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIIT--------NKFIFSEDLLCKLKCLDVEFVD  311 (526)
Q Consensus       240 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--------~~~~~~~~~~~~L~~L~l~~~~  311 (526)
                       +..+++|++|++++| .+...++..+     ..+++|+.|+++++....        .+.......+++|++|++++|.
T Consensus       268 -~~~l~~L~~L~L~~n-~l~~~~~~~~-----~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~  340 (680)
T 1ziw_A          268 -FAWLPQLEYFFLEYN-NIQHLFSHSL-----HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND  340 (680)
T ss_dssp             -TTTCTTCCEEECCSC-CBSEECTTTT-----TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred             -ccCcccccEeeCCCC-ccCccChhhh-----cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence             556677777777766 3444433222     256667776665432211        1111122356677777777765


Q ss_pred             cccccccchhHhhcCCCccEEEEe-ec--cccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCC
Q 039042          312 ELTTILSLDDFLQRFPTLKVLQIE-GY--SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHR  387 (526)
Q Consensus       312 ~l~~~~~~~~~l~~l~~L~~L~l~-~~--~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~  387 (526)
                      ...   ++...+..+++|++|+++ +.  ...++...+.....++|+.|++. +.+..+.+..+..+++|+.|+++++..
T Consensus       341 l~~---~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  417 (680)
T 1ziw_A          341 IPG---IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI  417 (680)
T ss_dssp             BCC---CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             cCC---CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcC
Confidence            332   344456677778877776 32  22222222211112455555555 555555555555555666666655543


Q ss_pred             ccccc-CCCccCCCcCEEEEccCCCccccc-------------------------chHHHhhcccccEEEEcccccccee
Q 039042          388 LINLV-PSSTSFQNLTSLEISYCNGLKNVL-------------------------TFSIAKTLVRLREMKIESCAMITEI  441 (526)
Q Consensus       388 l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~-------------------------~~~~~~~l~~L~~L~i~~c~~l~~~  441 (526)
                      ...++ ..+..+++|++|++++|. +..++                         .+..+..+++|+.|+++++. +..+
T Consensus       418 ~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i  495 (680)
T 1ziw_A          418 GQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANI  495 (680)
T ss_dssp             EEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CCCC
T ss_pred             ccccCcccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC-CCcC
Confidence            33232 123344444444444442 22211                         11234556667777776643 4444


Q ss_pred             cccccCCcccccCCCeeeeCccCeEecCCCccccccCCC-------CccccCCCccEEeEecCCCccccCCC-CCCCccc
Q 039042          442 VLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSG-------NRALNFPSLERLLVDDCTNMKGFSRG-ELSTPVL  513 (526)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-------~~~~~~~~L~~L~l~~C~~l~~l~~~-~~~~~~L  513 (526)
                      +..           .+..+++|++|+++++ .++.++..       ..+..+++|++|+++++ +++.+|.+ ...+++|
T Consensus       496 ~~~-----------~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L  562 (680)
T 1ziw_A          496 NDD-----------MLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFEL  562 (680)
T ss_dssp             CTT-----------TTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred             Chh-----------hhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCc
Confidence            332           2335678888888874 45554221       11456788999999885 57778765 4568899


Q ss_pred             ceEEec
Q 039042          514 HKVQLN  519 (526)
Q Consensus       514 ~~l~l~  519 (526)
                      ++++++
T Consensus       563 ~~L~Ls  568 (680)
T 1ziw_A          563 KIIDLG  568 (680)
T ss_dssp             CEEECC
T ss_pred             ceeECC
Confidence            999887

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.94  E-value=1.9e-25  Score=236.40  Aligned_cols=408  Identities=12%  Similarity=0.059  Sum_probs=277.5

Q ss_pred             ccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhcccccccchhhhh
Q 039042           51 EDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANISNTLFLE  128 (526)
Q Consensus        51 ~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~  128 (526)
                      ..++.++++++.+..++.. ....+++|++|++++|.....+...++++++|++  +.++. +..++.     ..+..++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-----~~~~~l~  100 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLAL-----GAFSGLS  100 (570)
T ss_dssp             SSCCEEECCSCCCCEECTT-TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECT-----TTTTTCT
T ss_pred             ccccEEEccCCccCccChh-HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-CCccCH-----hhhcCcc
Confidence            4678889988888776543 4467899999999999766556667889999999  66554 333332     1223489


Q ss_pred             hhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhh
Q 039042          129 KLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEE  208 (526)
Q Consensus       129 ~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~  208 (526)
                      +|++|++++|.++.+... +   ++.+++|++|++++|.....-.|..++   .+++|++|++++| .+..++...    
T Consensus       101 ~L~~L~L~~n~l~~l~~~-~---~~~l~~L~~L~L~~n~l~~~~lp~~~~---~l~~L~~L~l~~n-~l~~~~~~~----  168 (570)
T 2z63_A          101 SLQKLVAVETNLASLENF-P---IGHLKTLKELNVAHNLIQSFKLPEYFS---NLTNLEHLDLSSN-KIQSIYCTD----  168 (570)
T ss_dssp             TCCEEECTTSCCCCSTTC-S---CTTCTTCCEEECCSSCCCCCCCCGGGG---GCTTCCEEECTTS-CCCEECGGG----
T ss_pred             ccccccccccccccCCCc-c---ccccccccEEecCCCccceecChhhhc---ccCCCCEEeCcCC-ccceecHHH----
Confidence            999999999987765221 1   558999999999997533211366655   7999999999998 565554322    


Q ss_pred             hccccccccccc----ceeecccCccccccccCcccccCCCCccEEEeccCCC---------------------------
Q 039042          209 ERKNNIVMFPQL----QYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPE---------------------------  257 (526)
Q Consensus       209 ~~~~~~~~l~~L----~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~---------------------------  257 (526)
                           +..+++|    ++|+++++ .+..++..   .....+|++|+++++..                           
T Consensus       169 -----~~~l~~L~~~~~~L~l~~n-~l~~~~~~---~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~  239 (570)
T 2z63_A          169 -----LRVLHQMPLLNLSLDLSLN-PMNFIQPG---AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN  239 (570)
T ss_dssp             -----GHHHHTCTTCCCEEECTTC-CCCEECTT---TTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC
T ss_pred             -----ccchhccchhhhhcccCCC-CceecCHH---HhccCcceeEecccccccccchhhhhcCccccceeeeccccccC
Confidence                 1456666    78888874 45555444   22333678887766511                           


Q ss_pred             ---ceeccccccC-------------------C---ccccccCCcceEEEeeccccccceeccc--cccccccEEEeeeC
Q 039042          258 ---FMVRFKRTTN-------------------D---LTKKVFPNLEELIVDAEYIITNKFIFSE--DLLCKLKCLDVEFV  310 (526)
Q Consensus       258 ---l~~~~~~~~~-------------------~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~  310 (526)
                         +..++.....                   +   .....+++|+.|+++++.+.    .+|.  ..+ +|++|++++|
T Consensus       240 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~----~l~~~~~~~-~L~~L~l~~n  314 (570)
T 2z63_A          240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE----RVKDFSYNF-GWQHLELVNC  314 (570)
T ss_dssp             CSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC----SCCBCCSCC-CCSEEEEESC
T ss_pred             chhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch----hhhhhhccC-CccEEeeccC
Confidence               0011000000                   0   00134678888888866553    2332  234 8888888887


Q ss_pred             CcccccccchhHhhcCCCccEEEEe-ec-cccccCCCcCccccccceEEEec-cCceeec--cccccccCcccEEEEecc
Q 039042          311 DELTTILSLDDFLQRFPTLKVLQIE-GY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYIL--KQESSIMNNLVILHVTNC  385 (526)
Q Consensus       311 ~~l~~~~~~~~~l~~l~~L~~L~l~-~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~--~~~~~~l~~L~~L~l~~c  385 (526)
                      ...   .+|.   ..+++|++|.+. +. ...++.     ..+++|++|++. +.+....  +..+..+++|++|++++|
T Consensus       315 ~~~---~l~~---~~l~~L~~L~l~~n~~~~~~~~-----~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n  383 (570)
T 2z63_A          315 KFG---QFPT---LKLKSLKRLTFTSNKGGNAFSE-----VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN  383 (570)
T ss_dssp             BCS---SCCB---CBCSSCCEEEEESCBSCCBCCC-----CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSC
T ss_pred             ccc---ccCc---ccccccCEEeCcCCcccccccc-----ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCC
Confidence            643   3443   467888999888 33 222221     467899999999 7777664  456777899999999998


Q ss_pred             CCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCe
Q 039042          386 HRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNE  465 (526)
Q Consensus       386 ~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~  465 (526)
                      . +..++..+..+++|++|+++++ .+...+....+..+++|++|++++|......+..            +..+++|++
T Consensus       384 ~-l~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------------~~~l~~L~~  449 (570)
T 2z63_A          384 G-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI------------FNGLSSLEV  449 (570)
T ss_dssp             S-EEEEEEEEETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTSCCEECCTTT------------TTTCTTCCE
T ss_pred             c-cccccccccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCCcccccchhh------------hhcCCcCcE
Confidence            5 4444445778899999999987 4555543345678899999999997633333322            235799999


Q ss_pred             EecCCCccc-cccCCCCccccCCCccEEeEecCCCcccc-CCCCCCCcccceEEec
Q 039042          466 LKLLNLKSL-RSFYSGNRALNFPSLERLLVDDCTNMKGF-SRGELSTPVLHKVQLN  519 (526)
Q Consensus       466 L~l~~~~~l-~~l~~~~~~~~~~~L~~L~l~~C~~l~~l-~~~~~~~~~L~~l~l~  519 (526)
                      |++++|... ..+|..  +..+++|++|++++|. ++.. |.....+++|++|+++
T Consensus       450 L~l~~n~l~~~~~p~~--~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~  502 (570)
T 2z63_A          450 LKMAGNSFQENFLPDI--FTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMA  502 (570)
T ss_dssp             EECTTCEEGGGEECSC--CTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECC
T ss_pred             EECcCCcCccccchhh--hhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCC
Confidence            999997643 246644  6789999999999975 6565 6666778999999998

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.93  E-value=6.5e-25  Score=242.38  Aligned_cols=230  Identities=14%  Similarity=0.112  Sum_probs=108.0

Q ss_pred             CCcceEEEeeccccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCcccccc
Q 039042          275 PNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVI  353 (526)
Q Consensus       275 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~  353 (526)
                      ++|+.|++++|.+.. +..-....+++|+.|++++|..-.   ++...+..+++|++|+++ +.........+  ..+++
T Consensus       266 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~  339 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKINK---IADEAFYGLDNLQVLNLSYNLLGELYSSNF--YGLPK  339 (844)
T ss_dssp             SCCCEEECTTCCCCE-ECSCCSSSCCCCCEEEEESCCCCE---ECTTTTTTCSSCCEEEEESCCCSCCCSCSC--SSCTT
T ss_pred             CCccEEECCCCcccc-cChhhhhcCCCCCEEECCCCcCCC---CChHHhcCCCCCCEEECCCCCCCccCHHHh--cCCCC
Confidence            455555555444321 100111234555556655544322   222344555556666555 22222211221  34455


Q ss_pred             ceEEEec-cCceeeccccccccCcccEEEEeccCC------------------cccccCCCccCCCcCEEEEccCCCccc
Q 039042          354 IRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHR------------------LINLVPSSTSFQNLTSLEISYCNGLKN  414 (526)
Q Consensus       354 L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~------------------l~~l~~~~~~~~~L~~L~l~~c~~l~~  414 (526)
                      |++|++. +.+..+++..+..+++|+.|++++|..                  +..+|.   ...+++.|+++++ +++.
T Consensus       340 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~---~~~~l~~L~ls~N-~l~~  415 (844)
T 3j0a_A          340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPK---INLTANLIHLSEN-RLEN  415 (844)
T ss_dssp             CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCC---CCTTCCEEECCSC-CCCS
T ss_pred             CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccc---cccccceeecccC-cccc
Confidence            5555555 555555555555555555555555421                  111211   1223333444332 3333


Q ss_pred             ccchHHHhhcccccEEEEccccccceecccccC---------------Cc----ccccCCCeeeeCccCeEecCCCcccc
Q 039042          415 VLTFSIAKTLVRLREMKIESCAMITEIVLADDD---------------DD----HDAAKDEVIAFSELNELKLLNLKSLR  475 (526)
Q Consensus       415 ~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~---------------~~----~~~~~~~~~~~~~L~~L~l~~~~~l~  475 (526)
                      ++.......+++|+.|+++++. +...+.....               ..    .......+..+++|+.|+++++ .++
T Consensus       416 l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~  493 (844)
T 3j0a_A          416 LDILYFLLRVPHLQILILNQNR-FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLN  493 (844)
T ss_dssp             STTHHHHTTCTTCCEEEEESCC-CCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHT
T ss_pred             CchhhhhhcCCccceeeCCCCc-ccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC-ccc
Confidence            3333344466667777666643 2221110000               00    0000012345577777777764 566


Q ss_pred             ccCCCCccccCCCccEEeEecCCCccccCCCCCCCcccceEEec
Q 039042          476 SFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTPVLHKVQLN  519 (526)
Q Consensus       476 ~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~~L~~l~l~  519 (526)
                      .++... +..+++|+.|+++++ +++.+|..... ++|+.|+++
T Consensus       494 ~~~~~~-~~~l~~L~~L~Ls~N-~l~~l~~~~~~-~~L~~L~Ls  534 (844)
T 3j0a_A          494 SLPPGV-FSHLTALRGLSLNSN-RLTVLSHNDLP-ANLEILDIS  534 (844)
T ss_dssp             TCCTTS-SSSCCSCSEEEEESC-CCSSCCCCCCC-SCCCEEEEE
T ss_pred             ccChhH-ccchhhhheeECCCC-CCCccChhhhh-ccccEEECC
Confidence            666543 556788888888875 57777665543 667766665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.93  E-value=6.2e-25  Score=229.84  Aligned_cols=411  Identities=12%  Similarity=0.014  Sum_probs=232.3

Q ss_pred             ccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhcccccccchhhhh
Q 039042           51 EDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANISNTLFLE  128 (526)
Q Consensus        51 ~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~  128 (526)
                      .+++.++++++.+...+.. ....+++|++|++++|.....++..++++++|++  ++++ .+..++..        .++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--------~l~   90 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTS-DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--------PTV   90 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHH-HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--------CCC
T ss_pred             ccccEEECCCCcccccChh-hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--------ccC
Confidence            4566666666655554421 2345666666666666554443344566666666  4443 23333322        166


Q ss_pred             hhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccc--cEEeeecccc--ccEEEeec
Q 039042          129 KLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRL--QYIRIEKCHV--LEELIVVD  204 (526)
Q Consensus       129 ~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L--~~L~l~~~~~--l~~l~~~~  204 (526)
                      +|++|++++|.++.+..  |.. +..+++|++|++++|. ++.   ..   ++.+++|  ++|++++|..  ....+..+
T Consensus        91 ~L~~L~L~~N~l~~~~~--p~~-~~~l~~L~~L~L~~n~-l~~---~~---~~~l~~L~L~~L~l~~n~l~~~~~~~~~l  160 (520)
T 2z7x_B           91 NLKHLDLSFNAFDALPI--CKE-FGNMSQLKFLGLSTTH-LEK---SS---VLPIAHLNISKVLLVLGETYGEKEDPEGL  160 (520)
T ss_dssp             CCSEEECCSSCCSSCCC--CGG-GGGCTTCCEEEEEESS-CCG---GG---GGGGTTSCEEEEEEEECTTTTSSCCTTTT
T ss_pred             CccEEeccCCccccccc--hhh-hccCCcceEEEecCcc-cch---hh---ccccccceeeEEEeecccccccccccccc
Confidence            66666666665553211  222 4466666666666654 221   11   1245555  6666666632  12221111


Q ss_pred             chhh---------------hc-ccccccccccceeecccCc------cccccccCcccccCCCCccEEEeccCCCceecc
Q 039042          205 NQEE---------------ER-KNNIVMFPQLQYLKMYDLE------KLTSFCTGDVHMLEFPSLKELWISRCPEFMVRF  262 (526)
Q Consensus       205 ~~~~---------------~~-~~~~~~l~~L~~L~l~~~~------~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~  262 (526)
                      ....               .. ...+..+++|+.|+++++.      .+......   +..+++|+.|.++++ .+....
T Consensus       161 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~---l~~l~~L~~L~l~~~-~l~~~~  236 (520)
T 2z7x_B          161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAK---LQTNPKLSNLTLNNI-ETTWNS  236 (520)
T ss_dssp             TTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHG---GGGCTTCCEEEEEEE-EEEHHH
T ss_pred             cccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhh---hccccchhhcccccc-ccCHHH
Confidence            0000               00 0001234555555555432      01111111   445566666666554 222110


Q ss_pred             -ccccCCccccccCCcceEEEeeccccccceeccc-------cccccccEEEeeeCCcccccccchhHhhcC---CCccE
Q 039042          263 -KRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSE-------DLLCKLKCLDVEFVDELTTILSLDDFLQRF---PTLKV  331 (526)
Q Consensus       263 -~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-------~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l---~~L~~  331 (526)
                       .....   ....++|++|++++|.+..   .+|.       ..+++|+.++++.+.. .   +|...+..+   ++|+.
T Consensus       237 ~~~~~~---~~~~~~L~~L~l~~n~l~~---~~p~~~~~~~~~~l~~L~~l~l~~n~~-~---~p~~~~~~~~~~~~L~~  306 (520)
T 2z7x_B          237 FIRILQ---LVWHTTVWYFSISNVKLQG---QLDFRDFDYSGTSLKALSIHQVVSDVF-G---FPQSYIYEIFSNMNIKN  306 (520)
T ss_dssp             HHHHHH---HHHTSSCSEEEEEEEEEES---CCCCCCCCCCSCCCCEEEEEEEEECCC-C---SCTHHHHHHHHTCCCSE
T ss_pred             HHHHHH---HhhhCcccEEEeecccccC---ccccchhhcccccCceeEeccccccce-e---cchhhhhcccccCceeE
Confidence             00000   0123477777777665531   2222       3466777777777654 2   342233333   56888


Q ss_pred             EEEe-eccccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcc--cccCCCccCCCcCEEEEc
Q 039042          332 LQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLI--NLVPSSTSFQNLTSLEIS  407 (526)
Q Consensus       332 L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~--~l~~~~~~~~~L~~L~l~  407 (526)
                      |++. +.....+.    ...+++|++|+++ +.+....+..+..+++|+.|++++|....  .++..+..+++|++|+++
T Consensus       307 L~l~~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls  382 (520)
T 2z7x_B          307 FTVSGTRMVHMLC----PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS  382 (520)
T ss_dssp             EEEESSCCCCCCC----CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred             EEcCCCccccccc----hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence            8887 33211111    0456788999998 77777666777888899999998875432  444456678889999998


Q ss_pred             cCCCccc-ccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccC
Q 039042          408 YCNGLKN-VLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNF  486 (526)
Q Consensus       408 ~c~~l~~-~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~  486 (526)
                      ++ .+.. ++. ..+..+++|++|++++|.....++..              ..++|+.|+++++ .++.+|..  +..+
T Consensus       383 ~N-~l~~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~--------------l~~~L~~L~Ls~N-~l~~ip~~--~~~l  443 (520)
T 2z7x_B          383 QN-SVSYDEKK-GDCSWTKSLLSLNMSSNILTDTIFRC--------------LPPRIKVLDLHSN-KIKSIPKQ--VVKL  443 (520)
T ss_dssp             SS-CCBCCGGG-CSCCCCTTCCEEECCSSCCCGGGGGS--------------CCTTCCEEECCSS-CCCCCCGG--GGGC
T ss_pred             CC-cCCccccc-chhccCccCCEEECcCCCCCcchhhh--------------hcccCCEEECCCC-cccccchh--hhcC
Confidence            87 4554 542 23456788999999886533333321              1279999999985 67788876  4589


Q ss_pred             CCccEEeEecCCCccccCCC-CCCCcccceEEec
Q 039042          487 PSLERLLVDDCTNMKGFSRG-ELSTPVLHKVQLN  519 (526)
Q Consensus       487 ~~L~~L~l~~C~~l~~l~~~-~~~~~~L~~l~l~  519 (526)
                      ++|++|++++| +++.+|.. ...+++|++++++
T Consensus       444 ~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~  476 (520)
T 2z7x_B          444 EALQELNVASN-QLKSVPDGIFDRLTSLQKIWLH  476 (520)
T ss_dssp             TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCCEEECCCC-cCCccCHHHhccCCcccEEECc
Confidence            99999999997 68888886 5678999999998

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.93  E-value=1.9e-25  Score=238.69  Aligned_cols=346  Identities=14%  Similarity=0.120  Sum_probs=242.5

Q ss_pred             chhhhhhhhhhcccccccccc-----ccc---------ccccccc--cCCcccEEEeccCCCceecCCcccccccccccc
Q 039042          123 NTLFLEKLEKLELRSINIERI-----WRN---------QVAAMTC--GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRL  186 (526)
Q Consensus       123 ~~~~l~~L~~L~L~~~~l~~~-----~~~---------~~~~~~~--~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L  186 (526)
                      .++.+++|++|++++|.++..     |..         .|.+ ++  ++++|++|++++|.....+ |..++   .+++|
T Consensus       201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~-p~~l~---~l~~L  275 (636)
T 4eco_A          201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKL-PTFLK---ALPEM  275 (636)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSC-CTTTT---TCSSC
T ss_pred             HHhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccC-hHHHh---cCCCC
Confidence            355689999999999987761     110         2555 67  8999999999998755544 66655   79999


Q ss_pred             cEEeeecccccc--EEEeecchhhhcccccccccccceeecccCcccccccc--CcccccCCCCccEEEeccCCCce-ec
Q 039042          187 QYIRIEKCHVLE--ELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCT--GDVHMLEFPSLKELWISRCPEFM-VR  261 (526)
Q Consensus       187 ~~L~l~~~~~l~--~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~l~~L~~L~l~~c~~l~-~~  261 (526)
                      ++|++++|..+.  .+|..+....    ....+++|++|+++++ .+..+|.  .   ++.+++|++|++++| .+. .+
T Consensus       276 ~~L~Ls~n~~l~~~~lp~~~~~L~----~~~~l~~L~~L~L~~n-~l~~ip~~~~---l~~l~~L~~L~L~~N-~l~g~i  346 (636)
T 4eco_A          276 QLINVACNRGISGEQLKDDWQALA----DAPVGEKIQIIYIGYN-NLKTFPVETS---LQKMKKLGMLECLYN-QLEGKL  346 (636)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHH----HSGGGGTCCEEECCSS-CCSSCCCHHH---HTTCTTCCEEECCSC-CCEEEC
T ss_pred             CEEECcCCCCCccccchHHHHhhh----ccccCCCCCEEECCCC-cCCccCchhh---hccCCCCCEEeCcCC-cCccch
Confidence            999999995344  3444331100    0023489999999985 5667776  4   778999999999998 556 66


Q ss_pred             cccccCCccccccCCcceEEEeeccccccceeccc--ccccc-ccEEEeeeCCcccccccchhHhhc--CCCccEEEEe-
Q 039042          262 FKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSE--DLLCK-LKCLDVEFVDELTTILSLDDFLQR--FPTLKVLQIE-  335 (526)
Q Consensus       262 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~-L~~L~l~~~~~l~~~~~~~~~l~~--l~~L~~L~l~-  335 (526)
                      | .+      ..+++|+.|++++|.+.    .+|.  ..+++ |++|++++|.. +  .+|. .+..  +++|+.|+++ 
T Consensus       347 p-~~------~~l~~L~~L~L~~N~l~----~lp~~l~~l~~~L~~L~Ls~N~l-~--~lp~-~~~~~~l~~L~~L~Ls~  411 (636)
T 4eco_A          347 P-AF------GSEIKLASLNLAYNQIT----EIPANFCGFTEQVENLSFAHNKL-K--YIPN-IFDAKSVSVMSAIDFSY  411 (636)
T ss_dssp             C-CC------EEEEEESEEECCSSEEE----ECCTTSEEECTTCCEEECCSSCC-S--SCCS-CCCTTCSSCEEEEECCS
T ss_pred             h-hh------CCCCCCCEEECCCCccc----cccHhhhhhcccCcEEEccCCcC-c--ccch-hhhhcccCccCEEECcC
Confidence            6 44      46889999999987663    3443  35667 99999998764 3  3554 2333  4489999998 


Q ss_pred             ec-cccccCCC----cCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCcc--------CCCc
Q 039042          336 GY-SDWLPKEK----VENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTS--------FQNL  401 (526)
Q Consensus       336 ~~-~~~~~~~~----~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~--------~~~L  401 (526)
                      +. .+..|...    .....+++|++|+++ +.+..++...+..+++|+.|++++|... .+|.....        +++|
T Consensus       412 N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L  490 (636)
T 4eco_A          412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLL  490 (636)
T ss_dssp             SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGC
T ss_pred             CcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCc
Confidence            44 33222111    111245689999999 8888887776777899999999987543 66654332        2289


Q ss_pred             CEEEEccCCCcccccchHHH--hhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCC------Ccc
Q 039042          402 TSLEISYCNGLKNVLTFSIA--KTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLN------LKS  473 (526)
Q Consensus       402 ~~L~l~~c~~l~~~~~~~~~--~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~  473 (526)
                      +.|+++++ +++.++  ..+  ..+++|+.|+++++. +..+|..            +..+++|+.|++++      +..
T Consensus       491 ~~L~Ls~N-~l~~lp--~~~~~~~l~~L~~L~Ls~N~-l~~ip~~------------~~~l~~L~~L~Ls~N~~ls~N~l  554 (636)
T 4eco_A          491 TSIDLRFN-KLTKLS--DDFRATTLPYLVGIDLSYNS-FSKFPTQ------------PLNSSTLKGFGIRNQRDAQGNRT  554 (636)
T ss_dssp             CEEECCSS-CCCBCC--GGGSTTTCTTCCEEECCSSC-CSSCCCG------------GGGCSSCCEEECCSCBCTTCCBC
T ss_pred             cEEECcCC-cCCccC--hhhhhccCCCcCEEECCCCC-CCCcChh------------hhcCCCCCEEECCCCcccccCcc
Confidence            99999987 577666  334  388999999999854 5556554            23578999999954      333


Q ss_pred             ccccCCCCccccCCCccEEeEecCCCccccCCCCCCCcccceEEec
Q 039042          474 LRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTPVLHKVQLN  519 (526)
Q Consensus       474 l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~~L~~l~l~  519 (526)
                      .+.+|..  +..+++|++|++++|. ++.+|....  ++|+.|+++
T Consensus       555 ~~~~p~~--l~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls  595 (636)
T 4eco_A          555 LREWPEG--ITLCPSLTQLQIGSND-IRKVNEKIT--PNISVLDIK  595 (636)
T ss_dssp             CCCCCTT--GGGCSSCCEEECCSSC-CCBCCSCCC--TTCCEEECC
T ss_pred             cccChHH--HhcCCCCCEEECCCCc-CCccCHhHh--CcCCEEECc
Confidence            4556654  6778999999999865 588887644  789999888

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.92  E-value=1.2e-24  Score=237.21  Aligned_cols=347  Identities=14%  Similarity=0.136  Sum_probs=243.9

Q ss_pred             chhhhhhhhhhcccccccccc-----ccc---------ccccccc--cCCcccEEEeccCCCceecCCcccccccccccc
Q 039042          123 NTLFLEKLEKLELRSINIERI-----WRN---------QVAAMTC--GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRL  186 (526)
Q Consensus       123 ~~~~l~~L~~L~L~~~~l~~~-----~~~---------~~~~~~~--~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L  186 (526)
                      .++.+++|++|+|++|.++..     |..         .|.+ ++  .+++|++|++++|.....+ |..+.   .+++|
T Consensus       443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N~l~~~i-P~~l~---~L~~L  517 (876)
T 4ecn_A          443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDVELYNCPNMTQL-PDFLY---DLPEL  517 (876)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEESCTTCCSC-CGGGG---GCSSC
T ss_pred             HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh-hhhccCCCCCEEECcCCCCCccC-hHHHh---CCCCC
Confidence            455688999999999977761     110         2555 55  8999999999998755554 66655   79999


Q ss_pred             cEEeeecccccc--EEEeecchhhhcccccccccccceeecccCcccccccc--CcccccCCCCccEEEeccCCCceecc
Q 039042          187 QYIRIEKCHVLE--ELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCT--GDVHMLEFPSLKELWISRCPEFMVRF  262 (526)
Q Consensus       187 ~~L~l~~~~~l~--~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~l~~L~~L~l~~c~~l~~~~  262 (526)
                      ++|++++|..+.  .+|..+.....   ....+++|++|+++++ .+..+|.  .   +..+++|++|++++| .+..+|
T Consensus       518 ~~L~Ls~N~~lsg~~iP~~i~~L~~---~~~~l~~L~~L~Ls~N-~L~~ip~~~~---l~~L~~L~~L~Ls~N-~l~~lp  589 (876)
T 4ecn_A          518 QSLNIACNRGISAAQLKADWTRLAD---DEDTGPKIQIFYMGYN-NLEEFPASAS---LQKMVKLGLLDCVHN-KVRHLE  589 (876)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHH---CTTTTTTCCEEECCSS-CCCBCCCHHH---HTTCTTCCEEECTTS-CCCBCC
T ss_pred             CEEECcCCCCcccccchHHHHhhhh---cccccCCccEEEeeCC-cCCccCChhh---hhcCCCCCEEECCCC-Ccccch
Confidence            999999985343  34443311000   1135669999999985 5667776  4   778999999999998 566666


Q ss_pred             ccccCCccccccCCcceEEEeeccccccceeccc--ccccc-ccEEEeeeCCcccccccchhHhhcC--CCccEEEEe-e
Q 039042          263 KRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSE--DLLCK-LKCLDVEFVDELTTILSLDDFLQRF--PTLKVLQIE-G  336 (526)
Q Consensus       263 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~-L~~L~l~~~~~l~~~~~~~~~l~~l--~~L~~L~l~-~  336 (526)
                       .+      ..+++|+.|++++|.+.    .+|.  ..+++ |++|++++|.. +  .+|. .+..+  ++|+.|+++ +
T Consensus       590 -~~------~~L~~L~~L~Ls~N~l~----~lp~~l~~l~~~L~~L~Ls~N~L-~--~lp~-~~~~~~~~~L~~L~Ls~N  654 (876)
T 4ecn_A          590 -AF------GTNVKLTDLKLDYNQIE----EIPEDFCAFTDQVEGLGFSHNKL-K--YIPN-IFNAKSVYVMGSVDFSYN  654 (876)
T ss_dssp             -CC------CTTSEESEEECCSSCCS----CCCTTSCEECTTCCEEECCSSCC-C--SCCS-CCCTTCSSCEEEEECCSS
T ss_pred             -hh------cCCCcceEEECcCCccc----cchHHHhhccccCCEEECcCCCC-C--cCch-hhhccccCCCCEEECcCC
Confidence             44      46899999999987664    3443  35667 99999998763 3  3553 33333  449999998 4


Q ss_pred             c-cccccCC--CcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCcc--------CCCcCEE
Q 039042          337 Y-SDWLPKE--KVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTS--------FQNLTSL  404 (526)
Q Consensus       337 ~-~~~~~~~--~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~--------~~~L~~L  404 (526)
                      . .+..|.-  .+.....++|+.|+++ +.+..++...+..+++|+.|++++| .+..+|.....        +++|+.|
T Consensus       655 ~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L  733 (876)
T 4ecn_A          655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTI  733 (876)
T ss_dssp             CTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEE
T ss_pred             cCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEE
Confidence            3 2222211  1111234689999999 8888887766677899999999988 44466654433        2389999


Q ss_pred             EEccCCCcccccchHHHh--hcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCC------Cccccc
Q 039042          405 EISYCNGLKNVLTFSIAK--TLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLN------LKSLRS  476 (526)
Q Consensus       405 ~l~~c~~l~~~~~~~~~~--~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~  476 (526)
                      ++++| +++.++  ..+.  .+++|+.|+++++. +..+|..            +..+++|+.|++++      +.....
T Consensus       734 ~Ls~N-~L~~lp--~~l~~~~l~~L~~L~Ls~N~-L~~lp~~------------l~~L~~L~~L~Ls~N~~ls~N~l~~~  797 (876)
T 4ecn_A          734 DLRFN-KLTSLS--DDFRATTLPYLSNMDVSYNC-FSSFPTQ------------PLNSSQLKAFGIRHQRDAEGNRILRQ  797 (876)
T ss_dssp             ECCSS-CCCCCC--GGGSTTTCTTCCEEECCSSC-CSSCCCG------------GGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred             ECCCC-CCccch--HHhhhccCCCcCEEEeCCCC-CCccchh------------hhcCCCCCEEECCCCCCccccccccc
Confidence            99988 677766  3443  88999999999864 5556544            33679999999976      333455


Q ss_pred             cCCCCccccCCCccEEeEecCCCccccCCCCCCCcccceEEec
Q 039042          477 FYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTPVLHKVQLN  519 (526)
Q Consensus       477 l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~~L~~l~l~  519 (526)
                      +|..  +..+++|+.|++++|. +..+|....  ++|+.|+++
T Consensus       798 ip~~--l~~L~~L~~L~Ls~N~-L~~Ip~~l~--~~L~~LdLs  835 (876)
T 4ecn_A          798 WPTG--ITTCPSLIQLQIGSND-IRKVDEKLT--PQLYILDIA  835 (876)
T ss_dssp             CCTT--GGGCSSCCEEECCSSC-CCBCCSCCC--SSSCEEECC
T ss_pred             ChHH--HhcCCCCCEEECCCCC-CCccCHhhc--CCCCEEECC
Confidence            5654  6789999999999975 588888754  689999988

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.92  E-value=2.3e-24  Score=227.14  Aligned_cols=422  Identities=12%  Similarity=0.056  Sum_probs=256.6

Q ss_pred             ccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhcccccccchhhhh
Q 039042           51 EDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANISNTLFLE  128 (526)
Q Consensus        51 ~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~  128 (526)
                      +.++.++++++.+...+.. ....+++|++|++++|.....+...++++++|++  ++++.. ..++.     ..++.++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~-----~~~~~l~   98 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL-SSLSS-----SWFGPLS   98 (549)
T ss_dssp             TTCCEEECCSSCCCEECSS-TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC-CSCCH-----HHHTTCT
T ss_pred             CCccEEECcCCccCccChh-hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc-CccCH-----HHhccCC
Confidence            5788888888877766432 3467889999999998766666566788888888  665542 22221     1123478


Q ss_pred             hhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccE-EEeecchh
Q 039042          129 KLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEE-LIVVDNQE  207 (526)
Q Consensus       129 ~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~-l~~~~~~~  207 (526)
                      +|++|++++|.++.+..  +.. +..+++|++|++++|..+..+++..+.   .+++|++|++++|. +.. .+..    
T Consensus        99 ~L~~L~Ls~n~l~~~~~--~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~---~l~~L~~L~L~~n~-l~~~~~~~----  167 (549)
T 2z81_A           99 SLKYLNLMGNPYQTLGV--TSL-FPNLTNLQTLRIGNVETFSEIRRIDFA---GLTSLNELEIKALS-LRNYQSQS----  167 (549)
T ss_dssp             TCCEEECTTCCCSSSCS--SCS-CTTCTTCCEEEEEESSSCCEECTTTTT---TCCEEEEEEEEETT-CCEECTTT----
T ss_pred             CCcEEECCCCcccccch--hhh-hhccCCccEEECCCCccccccCHhhhh---cccccCeeeccCCc-ccccChhh----
Confidence            89999999887764311  222 557888999999888766666444544   78889999998884 443 2222    


Q ss_pred             hhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccc
Q 039042          208 EERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYI  287 (526)
Q Consensus       208 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  287 (526)
                            +..+++|++|+++.+. ...++...  ...+++|++|++++| ++...+....  .+...+++|+.|+++++.+
T Consensus       168 ------l~~l~~L~~L~l~~n~-~~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~~~~--~~~~~~~~L~~L~l~~n~l  235 (549)
T 2z81_A          168 ------LKSIRDIHHLTLHLSE-SAFLLEIF--ADILSSVRYLELRDT-NLARFQFSPL--PVDEVSSPMKKLAFRGSVL  235 (549)
T ss_dssp             ------TTTCSEEEEEEEECSB-STTHHHHH--HHSTTTBSEEEEESC-BCTTCCCCCC--SSCCCCCCCCEEEEESCEE
T ss_pred             ------hhccccCceEecccCc-ccccchhh--HhhcccccEEEccCC-cccccccccc--chhhhhhcccceecccccc
Confidence                  2568888888888653 34443321  346888999999887 4444321000  0013577889998887655


Q ss_pred             cccc-eecc--ccccccccEEEeeeCCccccccc---chhHhhcCCCccEEEEe-ec-cccccCCCcC--ccccccceEE
Q 039042          288 ITNK-FIFS--EDLLCKLKCLDVEFVDELTTILS---LDDFLQRFPTLKVLQIE-GY-SDWLPKEKVE--NGMEVIIRRV  357 (526)
Q Consensus       288 ~~~~-~~~~--~~~~~~L~~L~l~~~~~l~~~~~---~~~~l~~l~~L~~L~l~-~~-~~~~~~~~~~--~~~~~~L~~L  357 (526)
                      .... ..++  ...+++|+.+++++|.......+   ....+..+++|+.+.+. +. ........+.  ....++|++|
T Consensus       236 ~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L  315 (549)
T 2z81_A          236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI  315 (549)
T ss_dssp             EHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEE
T ss_pred             chhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEE
Confidence            3211 1111  12467888888888754320001   11234556777887776 32 1110000000  0234577888


Q ss_pred             Eec-cCceeeccccccccCcccEEEEeccCCccccc---CCCccCCCcCEEEEccCCCcccccc-hHHHhhcccccEEEE
Q 039042          358 FRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLV---PSSTSFQNLTSLEISYCNGLKNVLT-FSIAKTLVRLREMKI  432 (526)
Q Consensus       358 ~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~---~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~i  432 (526)
                      ++. +.+..++...+..+++|+.|++++|.....++   ..+..+++|+.|++++| +++.++. ...+..+++|++|++
T Consensus       316 ~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~L  394 (549)
T 2z81_A          316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDI  394 (549)
T ss_dssp             EEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEEC
T ss_pred             EeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEEC
Confidence            887 76776655544567788888888776544332   23556778888888776 5555542 134567788888888


Q ss_pred             ccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCC----------------ccccCCCccEEeEec
Q 039042          433 ESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGN----------------RALNFPSLERLLVDD  496 (526)
Q Consensus       433 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~----------------~~~~~~~L~~L~l~~  496 (526)
                      ++| .+..+|....            .+++|++|+++++. ++.++...                ....+++|++|++++
T Consensus       395 s~N-~l~~lp~~~~------------~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~  460 (549)
T 2z81_A          395 SRN-TFHPMPDSCQ------------WPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISR  460 (549)
T ss_dssp             TTC-CCCCCCSCCC------------CCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred             CCC-CCccCChhhc------------ccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCC
Confidence            775 4555554321            33445555554432 22222110                012478899999988


Q ss_pred             CCCccccCCCCCCCcccceEEec
Q 039042          497 CTNMKGFSRGELSTPVLHKVQLN  519 (526)
Q Consensus       497 C~~l~~l~~~~~~~~~L~~l~l~  519 (526)
                      | +++.+|.. ..+++|++|+++
T Consensus       461 N-~l~~ip~~-~~l~~L~~L~Ls  481 (549)
T 2z81_A          461 N-KLKTLPDA-SLFPVLLVMKIS  481 (549)
T ss_dssp             S-CCSSCCCG-GGCTTCCEEECC
T ss_pred             C-ccCcCCCc-ccCccCCEEecC
Confidence            6 67788764 457889999887

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.91  E-value=4e-23  Score=228.14  Aligned_cols=424  Identities=12%  Similarity=0.021  Sum_probs=260.2

Q ss_pred             ccceecccccccccccccccccccCCcccEEEEecCCCCCC-chhhhhhccCccc--ccccccchhhhcccccccchhhh
Q 039042           51 EDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALN-PSAESKRQRQEES--ANDMQSNELILEDNANISNTLFL  127 (526)
Q Consensus        51 ~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~-p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l  127 (526)
                      .+++.++++++.+...+.. ....+++|++|++++|..... ++..++++++|++  +.++......+..+      ..+
T Consensus        24 ~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~------~~l   96 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF------QGL   96 (844)
T ss_dssp             TTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS------CSC
T ss_pred             CCcCEEECCCCcCCccChh-HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc------cCC
Confidence            5678888888777765432 456788999999998865544 5556788888888  65554322223222      237


Q ss_pred             hhhhhhccccccccccc-ccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          128 EKLEKLELRSINIERIW-RNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       128 ~~L~~L~L~~~~l~~~~-~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      ++|++|++++|.++... ....   +..+++|++|++++|......++..+.   .+++|++|++++| .+..+....  
T Consensus        97 ~~L~~L~Ls~n~l~~~~~~~~~---~~~L~~L~~L~Ls~N~l~~~~~~~~~~---~L~~L~~L~Ls~N-~i~~~~~~~--  167 (844)
T 3j0a_A           97 FHLFELRLYFCGLSDAVLKDGY---FRNLKALTRLDLSKNQIRSLYLHPSFG---KLNSLKSIDFSSN-QIFLVCEHE--  167 (844)
T ss_dssp             SSCCCEECTTCCCSSCCSTTCC---CSSCSSCCEEEEESCCCCCCCCCGGGG---TCSSCCEEEEESS-CCCCCCSGG--
T ss_pred             cccCEeeCcCCCCCcccccCcc---ccccCCCCEEECCCCcccccccchhHh---hCCCCCEEECCCC-cCCeeCHHH--
Confidence            88888888888776421 1111   447888888888887543321223333   7888888888887 343322211  


Q ss_pred             hhhcccccccc--cccceeecccCccccccccCcccccCCCC------ccEEEeccCCCceeccccccCCccccccCCcc
Q 039042          207 EEERKNNIVMF--PQLQYLKMYDLEKLTSFCTGDVHMLEFPS------LKELWISRCPEFMVRFKRTTNDLTKKVFPNLE  278 (526)
Q Consensus       207 ~~~~~~~~~~l--~~L~~L~l~~~~~l~~~~~~~~~~~~l~~------L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~  278 (526)
                             +..+  ++|++|+++++.-....+..   ++.+++      |++|++++|.--...+..+..   .....+++
T Consensus       168 -------l~~l~~~~L~~L~L~~n~l~~~~~~~---~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~---~l~~~~l~  234 (844)
T 3j0a_A          168 -------LEPLQGKTLSFFSLAANSLYSRVSVD---WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN---AISKSQAF  234 (844)
T ss_dssp             -------GHHHHHCSSCCCEECCSBSCCCCCCC---CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGG---TSCSCCBS
T ss_pred             -------cccccCCccceEECCCCccccccccc---hhhcCCccccCceeEEecCCCcCchhHHHHHHh---hcCccccc
Confidence                   1233  77888888876433333333   334443      888888887321122221111   01235677


Q ss_pred             eEEEeecccccc-----c-----eeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcC
Q 039042          279 ELIVDAEYIITN-----K-----FIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVE  347 (526)
Q Consensus       279 ~L~l~~~~~~~~-----~-----~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~  347 (526)
                      .+.++.+.+...     +     ..+..-..++|+.|+++++....   ++...+..+++|+.|++. +.....+...+ 
T Consensus       235 ~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-  310 (844)
T 3j0a_A          235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS---LNSRVFETLKDLKVLNLAYNKINKIADEAF-  310 (844)
T ss_dssp             EEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE---ECSCCSSSCCCCCEEEEESCCCCEECTTTT-
T ss_pred             ceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc---cChhhhhcCCCCCEEECCCCcCCCCChHHh-
Confidence            776652211110     0     11111124689999999876443   344467889999999999 44433333333 


Q ss_pred             ccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccC-CCccCCCcCEEEEccCCCcccccchHHHhhcc
Q 039042          348 NGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVP-SSTSFQNLTSLEISYCNGLKNVLTFSIAKTLV  425 (526)
Q Consensus       348 ~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~  425 (526)
                       ..+++|++|+++ +.+..+.+..+..+++|+.|+++++. +..++. .+..+++|+.|+++++ .++.++      .++
T Consensus       311 -~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~------~~~  381 (844)
T 3j0a_A          311 -YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDN-ALTTIH------FIP  381 (844)
T ss_dssp             -TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETC-CSCCCS------SCC
T ss_pred             -cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCC-CCCccc------CCC
Confidence             677899999999 88888888889999999999999984 455443 4677899999999987 566554      268


Q ss_pred             cccEEEEccccccceecccccCCcccccC-C---------CeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEe
Q 039042          426 RLREMKIESCAMITEIVLADDDDDHDAAK-D---------EVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVD  495 (526)
Q Consensus       426 ~L~~L~i~~c~~l~~~~~~~~~~~~~~~~-~---------~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~  495 (526)
                      +|+.|+++++. +..++.........+.. +         .+..+++|+.|+++++ .+..++.......+++|+.|+++
T Consensus       382 ~L~~L~l~~N~-l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls  459 (844)
T 3j0a_A          382 SIPDIFLSGNK-LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLG  459 (844)
T ss_dssp             SCSEEEEESCC-CCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEE
T ss_pred             CcchhccCCCC-cccccccccccceeecccCccccCchhhhhhcCCccceeeCCCC-cccccccccccccCCccccccCC
Confidence            89999998853 55554321100000000 0         0124677888888774 45544443234456888888888


Q ss_pred             cCCCccccC------CCCCCCcccceEEec
Q 039042          496 DCTNMKGFS------RGELSTPVLHKVQLN  519 (526)
Q Consensus       496 ~C~~l~~l~------~~~~~~~~L~~l~l~  519 (526)
                      ++. ++..+      .....+++|++|+++
T Consensus       460 ~N~-l~~~~~~~~~~~~~~~l~~L~~L~Ls  488 (844)
T 3j0a_A          460 ENM-LQLAWETELCWDVFEGLSHLQVLYLN  488 (844)
T ss_dssp             SCC-CSSSCCSCCCSSCSSCBCCEECCCCC
T ss_pred             CCc-cccccccccchhhhcCcccccEEECC
Confidence            753 43222      223456788888877

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.91  E-value=3.9e-23  Score=218.19  Aligned_cols=169  Identities=14%  Similarity=0.075  Sum_probs=121.6

Q ss_pred             CCccEEEEe-eccccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcc--cccCCCccCCCcC
Q 039042          327 PTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLI--NLVPSSTSFQNLT  402 (526)
Q Consensus       327 ~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~--~l~~~~~~~~~L~  402 (526)
                      .+|++|++. +.....+.    ...+++|++|++. +.+....+..+..+++|+.|+++++..-.  .++..+..+++|+
T Consensus       331 ~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~  406 (562)
T 3a79_B          331 MNIKMLSISDTPFIHMVC----PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE  406 (562)
T ss_dssp             CCCSEEEEESSCCCCCCC----CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCC
T ss_pred             CcceEEEccCCCcccccC----ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCC
Confidence            567788777 33211110    0456889999998 88887667778888999999999874322  3334567888999


Q ss_pred             EEEEccCCCccc-ccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCC
Q 039042          403 SLEISYCNGLKN-VLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGN  481 (526)
Q Consensus       403 ~L~l~~c~~l~~-~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~  481 (526)
                      .|+++++ .++. ++. .....+++|++|+++++.-...++..              ..++|++|+++++ .++.+|.. 
T Consensus       407 ~L~l~~N-~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~--------------l~~~L~~L~L~~N-~l~~ip~~-  468 (562)
T 3a79_B          407 TLDVSLN-SLNSHAYD-RTCAWAESILVLNLSSNMLTGSVFRC--------------LPPKVKVLDLHNN-RIMSIPKD-  468 (562)
T ss_dssp             EEECTTS-CCBSCCSS-CCCCCCTTCCEEECCSSCCCGGGGSS--------------CCTTCSEEECCSS-CCCCCCTT-
T ss_pred             EEECCCC-cCCCccCh-hhhcCcccCCEEECCCCCCCcchhhh--------------hcCcCCEEECCCC-cCcccChh-
Confidence            9999887 4555 442 24567789999999886532323221              1169999999985 78888876 


Q ss_pred             ccccCCCccEEeEecCCCccccCCC-CCCCcccceEEec
Q 039042          482 RALNFPSLERLLVDDCTNMKGFSRG-ELSTPVLHKVQLN  519 (526)
Q Consensus       482 ~~~~~~~L~~L~l~~C~~l~~l~~~-~~~~~~L~~l~l~  519 (526)
                       +..+++|++|+++++ +++.+|.. ...+++|+.++++
T Consensus       469 -~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~  505 (562)
T 3a79_B          469 -VTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLH  505 (562)
T ss_dssp             -TTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECC
T ss_pred             -hcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEec
Confidence             448899999999985 68888887 5678999999988

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.90  E-value=7.3e-23  Score=210.41  Aligned_cols=354  Identities=13%  Similarity=0.086  Sum_probs=205.9

Q ss_pred             CcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccccccchhhhhhhhhhcccccccccccccccccccccC
Q 039042           76 SQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGI  155 (526)
Q Consensus        76 ~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l  155 (526)
                      ++|++|++++|.....+...+++                            +++|++|++++|.+.....  +.. +..+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~----------------------------l~~L~~L~L~~n~~~~~i~--~~~-~~~l   78 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSR----------------------------LQDLQFLKVEQQTPGLVIR--NNT-FRGL   78 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSS----------------------------CTTCCEEECCCCSTTCEEC--TTT-TTTC
T ss_pred             CccCEEEecCCccCcCChhHhcc----------------------------CccccEEECcCCcccceEC--ccc-cccc
Confidence            67888888887654443322333                            5566666666664431110  111 4456


Q ss_pred             CcccEEEeccCCCceecCCcccccccccccccEEeeeccccccE-EEeecchhhhcccccccccccceeecccCcccccc
Q 039042          156 QNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEE-LIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSF  234 (526)
Q Consensus       156 ~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~  234 (526)
                      ++|++|++++|. ++.+.|..+.   .+++|++|++++|. +.. ++..        ..+..+++|++|+++++ .+..+
T Consensus        79 ~~L~~L~Ls~n~-l~~~~~~~~~---~l~~L~~L~L~~n~-l~~~~~~~--------~~~~~l~~L~~L~L~~n-~l~~~  144 (455)
T 3v47_A           79 SSLIILKLDYNQ-FLQLETGAFN---GLANLEVLTLTQCN-LDGAVLSG--------NFFKPLTSLEMLVLRDN-NIKKI  144 (455)
T ss_dssp             TTCCEEECTTCT-TCEECTTTTT---TCTTCCEEECTTSC-CBTHHHHS--------STTTTCTTCCEEECCSS-BCCSC
T ss_pred             ccCCEEeCCCCc-cCccChhhcc---CcccCCEEeCCCCC-CCccccCc--------ccccCcccCCEEECCCC-ccCcc
Confidence            667777776654 3333354444   56677777776663 221 1111        00145666777777664 33443


Q ss_pred             ccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceecc--------ccccccccEEE
Q 039042          235 CTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFS--------EDLLCKLKCLD  306 (526)
Q Consensus       235 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--------~~~~~~L~~L~  306 (526)
                      ... ..+..+++|++|++++| .+....+....   .....+|+.|+++++.+.. +....        ...+++|++|+
T Consensus       145 ~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~l~---~l~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~~~~~L~~L~  218 (455)
T 3v47_A          145 QPA-SFFLNMRRFHVLDLTFN-KVKSICEEDLL---NFQGKHFTLLRLSSITLQD-MNEYWLGWEKCGNPFKNTSITTLD  218 (455)
T ss_dssp             CCC-GGGGGCTTCCEEECTTC-CBSCCCTTTSG---GGTTCEEEEEECTTCBCTT-CSTTCTTHHHHCCTTTTCEEEEEE
T ss_pred             Ccc-cccCCCCcccEEeCCCC-cccccChhhhh---ccccccccccccccCcccc-cchhhccccccccccccceeeeEe
Confidence            221 11446677777777766 34433332211   0112566666666554421 11110        01235677777


Q ss_pred             eeeCCcccccccchhHhh--cCCCccEEEEe-ec--cccccC--------CCcCccccccceEEEec-cCceeecccccc
Q 039042          307 VEFVDELTTILSLDDFLQ--RFPTLKVLQIE-GY--SDWLPK--------EKVENGMEVIIRRVFRC-YDLKYILKQESS  372 (526)
Q Consensus       307 l~~~~~l~~~~~~~~~l~--~l~~L~~L~l~-~~--~~~~~~--------~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~  372 (526)
                      +++|....  ..+.....  ..++|+.|.+. +.  ...+..        ..+.....++|++|++. +.+..+.+..+.
T Consensus       219 Ls~n~l~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  296 (455)
T 3v47_A          219 LSGNGFKE--SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS  296 (455)
T ss_dssp             CTTSCCCH--HHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT
T ss_pred             cCCCcccc--cchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcc
Confidence            77765433  33332222  23677777776 32  111110        11111233689999998 888888888888


Q ss_pred             ccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccc
Q 039042          373 IMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDA  452 (526)
Q Consensus       373 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~  452 (526)
                      .+++|+.|++++|......+..+..+++|++|+++++ .+...+. ..+..+++|++|+++++. +..++..        
T Consensus       297 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~--------  365 (455)
T 3v47_A          297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDS-RMFENLDKLEVLDLSYNH-IRALGDQ--------  365 (455)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECG-GGGTTCTTCCEEECCSSC-CCEECTT--------
T ss_pred             cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC-ccCCcCh-hHhcCcccCCEEECCCCc-ccccChh--------
Confidence            8899999999988654444556778889999999887 5666542 356778999999998864 5544321        


Q ss_pred             cCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCC
Q 039042          453 AKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCT  498 (526)
Q Consensus       453 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~  498 (526)
                         .+..+++|++|++++ +.++.++... +..+++|++|++++++
T Consensus       366 ---~~~~l~~L~~L~L~~-N~l~~~~~~~-~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          366 ---SFLGLPNLKELALDT-NQLKSVPDGI-FDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             ---TTTTCTTCCEEECCS-SCCSCCCTTT-TTTCTTCCEEECCSSC
T ss_pred             ---hccccccccEEECCC-CccccCCHhH-hccCCcccEEEccCCC
Confidence               133578999999988 4677777653 5678999999998865

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.90  E-value=1.4e-22  Score=208.75  Aligned_cols=295  Identities=17%  Similarity=0.215  Sum_probs=157.0

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      +++|++|++++|.++....      +..+++|++|++++|. ++.+ |. +   +.+++|++|++++| .+..++.    
T Consensus        89 l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~~n~-l~~~-~~-~---~~l~~L~~L~l~~n-~l~~~~~----  151 (466)
T 1o6v_A           89 LTKLVDILMNNNQIADITP------LANLTNLTGLTLFNNQ-ITDI-DP-L---KNLTNLNRLELSSN-TISDISA----  151 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSC-CCCC-GG-G---TTCTTCSEEEEEEE-EECCCGG----
T ss_pred             cccCCEEECCCCccccChh------hcCCCCCCEEECCCCC-CCCC-hH-H---cCCCCCCEEECCCC-ccCCChh----
Confidence            5666666666665554311      3356666666666653 3333 21 2   25666666666666 3333221    


Q ss_pred             hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY  286 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  286 (526)
                             +..+++|++|++.+  .+..++    .+..+++|++|++++| .+..++. +      ..+++|++|++++|.
T Consensus       152 -------~~~l~~L~~L~l~~--~~~~~~----~~~~l~~L~~L~l~~n-~l~~~~~-l------~~l~~L~~L~l~~n~  210 (466)
T 1o6v_A          152 -------LSGLTSLQQLSFGN--QVTDLK----PLANLTTLERLDISSN-KVSDISV-L------AKLTNLESLIATNNQ  210 (466)
T ss_dssp             -------GTTCTTCSEEEEEE--SCCCCG----GGTTCTTCCEEECCSS-CCCCCGG-G------GGCTTCSEEECCSSC
T ss_pred             -------hccCCcccEeecCC--cccCch----hhccCCCCCEEECcCC-cCCCChh-h------ccCCCCCEEEecCCc
Confidence                   14566666666642  222221    1445666666666666 3443322 1      356666666666554


Q ss_pred             ccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cCce
Q 039042          287 IITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLK  364 (526)
Q Consensus       287 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~  364 (526)
                      +..   ..+.+.+++|++|++++|....   +  ..+..+++|+.|+++ +.....+.    ...+++|++|++. +.+.
T Consensus       211 l~~---~~~~~~l~~L~~L~l~~n~l~~---~--~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~  278 (466)
T 1o6v_A          211 ISD---ITPLGILTNLDELSLNGNQLKD---I--GTLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQIS  278 (466)
T ss_dssp             CCC---CGGGGGCTTCCEEECCSSCCCC---C--GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCC
T ss_pred             ccc---cccccccCCCCEEECCCCCccc---c--hhhhcCCCCCEEECCCCccccchh----hhcCCCCCEEECCCCccC
Confidence            421   1223445666666666654322   2  245566666666666 33211111    1445666777766 5555


Q ss_pred             eeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceeccc
Q 039042          365 YILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLA  444 (526)
Q Consensus       365 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~  444 (526)
                      .+++  +..+++|+.|++++|. +..+++ +..+++|+.|++++| ++...+.   ...+++|+.|++++|. +..++. 
T Consensus       279 ~~~~--~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~-  348 (466)
T 1o6v_A          279 NISP--LAGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNNK-VSDVSS-  348 (466)
T ss_dssp             CCGG--GTTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSSC-CCCCGG-
T ss_pred             cccc--ccCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCCc-cCCchh-
Confidence            5543  5556677777776663 333322 456667777777666 4444431   4566777777776653 433321 


Q ss_pred             ccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecC
Q 039042          445 DDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDC  497 (526)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C  497 (526)
                                  +..+++|+.|++++|. +..++.   +..+++|+.|++++|
T Consensus       349 ------------l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n  385 (466)
T 1o6v_A          349 ------------LANLTNINWLSAGHNQ-ISDLTP---LANLTRITQLGLNDQ  385 (466)
T ss_dssp             ------------GTTCTTCCEEECCSSC-CCBCGG---GTTCTTCCEEECCCE
T ss_pred             ------------hccCCCCCEEeCCCCc-cCccch---hhcCCCCCEEeccCC
Confidence                        2245677777776653 333322   345677777777665

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.90  E-value=4.9e-22  Score=204.74  Aligned_cols=341  Identities=13%  Similarity=0.132  Sum_probs=253.2

Q ss_pred             ccccCCcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccccccchhhhhhhhhhccccccccccccccccc
Q 039042           71 VRVGSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAA  150 (526)
Q Consensus        71 ~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~  150 (526)
                      ....++++++|++.+|.....|.  +.                            .+++|++|++++|.++.+..     
T Consensus        41 ~~~~l~~l~~L~l~~~~i~~l~~--~~----------------------------~l~~L~~L~Ls~n~l~~~~~-----   85 (466)
T 1o6v_A           41 SQTDLDQVTTLQADRLGIKSIDG--VE----------------------------YLNNLTQINFSNNQLTDITP-----   85 (466)
T ss_dssp             CHHHHHTCCEEECCSSCCCCCTT--GG----------------------------GCTTCCEEECCSSCCCCCGG-----
T ss_pred             ChhHhccccEEecCCCCCccCcc--hh----------------------------hhcCCCEEECCCCccCCchh-----
Confidence            33457899999999887544332  11                            27889999999998876522     


Q ss_pred             ccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCcc
Q 039042          151 MTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEK  230 (526)
Q Consensus       151 ~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  230 (526)
                       +..+++|++|++++|. ++.+.|  ++   .+++|++|++++| .+..++.           +..+++|++|+++++ .
T Consensus        86 -~~~l~~L~~L~l~~n~-l~~~~~--~~---~l~~L~~L~L~~n-~l~~~~~-----------~~~l~~L~~L~l~~n-~  145 (466)
T 1o6v_A           86 -LKNLTKLVDILMNNNQ-IADITP--LA---NLTNLTGLTLFNN-QITDIDP-----------LKNLTNLNRLELSSN-T  145 (466)
T ss_dssp             -GTTCTTCCEEECCSSC-CCCCGG--GT---TCTTCCEEECCSS-CCCCCGG-----------GTTCTTCSEEEEEEE-E
T ss_pred             -hhccccCCEEECCCCc-cccChh--hc---CCCCCCEEECCCC-CCCCChH-----------HcCCCCCCEEECCCC-c
Confidence             4589999999999975 444433  33   8999999999998 5655533           268999999999986 4


Q ss_pred             ccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeC
Q 039042          231 LTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFV  310 (526)
Q Consensus       231 l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  310 (526)
                      +..++ .   +..+++|++|.+.+  .+...++ +      ..+++|+.|++++|.+.. +.  ....+++|++|++++|
T Consensus       146 l~~~~-~---~~~l~~L~~L~l~~--~~~~~~~-~------~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n  209 (466)
T 1o6v_A          146 ISDIS-A---LSGLTSLQQLSFGN--QVTDLKP-L------ANLTTLERLDISSNKVSD-IS--VLAKLTNLESLIATNN  209 (466)
T ss_dssp             ECCCG-G---GTTCTTCSEEEEEE--SCCCCGG-G------TTCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSS
T ss_pred             cCCCh-h---hccCCcccEeecCC--cccCchh-h------ccCCCCCEEECcCCcCCC-Ch--hhccCCCCCEEEecCC
Confidence            56553 2   66899999999974  3444433 2      478999999999887632 21  2346789999999998


Q ss_pred             CcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCc
Q 039042          311 DELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRL  388 (526)
Q Consensus       311 ~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l  388 (526)
                      ....  ..   .++.+++|+.|++. +....++  .  ...+++|++|++. +.+..+.+  +..+++|+.|++++|. +
T Consensus       210 ~l~~--~~---~~~~l~~L~~L~l~~n~l~~~~--~--l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~-l  277 (466)
T 1o6v_A          210 QISD--IT---PLGILTNLDELSLNGNQLKDIG--T--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ-I  277 (466)
T ss_dssp             CCCC--CG---GGGGCTTCCEEECCSSCCCCCG--G--GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSC-C
T ss_pred             cccc--cc---cccccCCCCEEECCCCCcccch--h--hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCc-c
Confidence            6543  22   26779999999999 4432222  1  2567999999999 88877754  7788999999999984 4


Q ss_pred             ccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEec
Q 039042          389 INLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKL  468 (526)
Q Consensus       389 ~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  468 (526)
                      ..+++ +..+++|+.|++++| +++.++   .+..+++|+.|++++|. +..++.             +..+++|++|++
T Consensus       278 ~~~~~-~~~l~~L~~L~L~~n-~l~~~~---~~~~l~~L~~L~L~~n~-l~~~~~-------------~~~l~~L~~L~l  338 (466)
T 1o6v_A          278 SNISP-LAGLTALTNLELNEN-QLEDIS---PISNLKNLTYLTLYFNN-ISDISP-------------VSSLTKLQRLFF  338 (466)
T ss_dssp             CCCGG-GTTCTTCSEEECCSS-CCSCCG---GGGGCTTCSEEECCSSC-CSCCGG-------------GGGCTTCCEEEC
T ss_pred             Ccccc-ccCCCccCeEEcCCC-cccCch---hhcCCCCCCEEECcCCc-CCCchh-------------hccCccCCEeEC
Confidence            44444 678899999999998 577665   26788999999999975 444432             125799999999


Q ss_pred             CCCccccccCCCCccccCCCccEEeEecCCCccccCCCCCCCcccceEEec
Q 039042          469 LNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTPVLHKVQLN  519 (526)
Q Consensus       469 ~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~~L~~l~l~  519 (526)
                      ++| .++.++.   +..+++|+.|++++|. +...+. ...+++|+.++++
T Consensus       339 ~~n-~l~~~~~---l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~  383 (466)
T 1o6v_A          339 YNN-KVSDVSS---LANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLN  383 (466)
T ss_dssp             CSS-CCCCCGG---GTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECC
T ss_pred             CCC-ccCCchh---hccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEecc
Confidence            986 5666642   6689999999999985 555444 5568999999987

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.89  E-value=2.7e-22  Score=209.83  Aligned_cols=381  Identities=13%  Similarity=0.068  Sum_probs=219.4

Q ss_pred             cEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhcccccccchhhhhhhhhhcccccccccccccccccccccCC
Q 039042           79 KFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQ  156 (526)
Q Consensus        79 ~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~  156 (526)
                      ++|++++|.....|..+.   ++|++  ++++.. ..++.     ..+..+++|++|++++|.++.+.   |.. +..++
T Consensus         3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i-~~~~~-----~~~~~l~~L~~L~Ls~n~l~~~~---~~~-~~~l~   69 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNYI-SELWT-----SDILSLSKLRILIISHNRIQYLD---ISV-FKFNQ   69 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC---TTCSEEECCSSCC-CCCCH-----HHHTTCTTCCEEECCSSCCCEEE---GGG-GTTCT
T ss_pred             ceEecCCCCccccccccc---ccccEEECCCCcc-cccCh-----hhccccccccEEecCCCccCCcC---hHH-hhccc
Confidence            578888887665566432   55555  444432 22211     11223677777777777666441   112 45677


Q ss_pred             cccEEEeccCCCceecCCcccccccccccccEEeeeccccccE--EEeecchhhhcccccccccccceeecccCcccccc
Q 039042          157 NLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEE--LIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSF  234 (526)
Q Consensus       157 ~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~  234 (526)
                      +|++|++++|. ++.+ |..     .+++|++|++++| .+..  +|..+          +.+++|++|+++++ .+...
T Consensus        70 ~L~~L~Ls~N~-l~~l-p~~-----~l~~L~~L~L~~N-~l~~~~~p~~~----------~~l~~L~~L~L~~n-~l~~~  130 (520)
T 2z7x_B           70 ELEYLDLSHNK-LVKI-SCH-----PTVNLKHLDLSFN-AFDALPICKEF----------GNMSQLKFLGLSTT-HLEKS  130 (520)
T ss_dssp             TCCEEECCSSC-CCEE-ECC-----CCCCCSEEECCSS-CCSSCCCCGGG----------GGCTTCCEEEEEES-SCCGG
T ss_pred             CCCEEecCCCc-eeec-Ccc-----ccCCccEEeccCC-ccccccchhhh----------ccCCcceEEEecCc-ccchh
Confidence            77777777763 4444 332     4677777777777 3433  22222          56777777777764 33331


Q ss_pred             ccCcccccCCCCc--cEEEeccCCC--ceeccccccC--------------------CccccccCCcceEEEeecc----
Q 039042          235 CTGDVHMLEFPSL--KELWISRCPE--FMVRFKRTTN--------------------DLTKKVFPNLEELIVDAEY----  286 (526)
Q Consensus       235 ~~~~~~~~~l~~L--~~L~l~~c~~--l~~~~~~~~~--------------------~~~~~~l~~L~~L~l~~~~----  286 (526)
                        .   +..+++|  ++|++++|..  ....+..+..                    ......+++|+.+++++|.    
T Consensus       131 --~---~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  205 (520)
T 2z7x_B          131 --S---VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK  205 (520)
T ss_dssp             --G---GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTT
T ss_pred             --h---ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccc
Confidence              1   4456666  7777777632  1112211100                    0000124455555555432    


Q ss_pred             ---ccccceeccccccccccEEEeeeCCcccccccchhHh--hcCCCccEEEEe-ec-cccccCCCcCc--cccccceEE
Q 039042          287 ---IITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFL--QRFPTLKVLQIE-GY-SDWLPKEKVEN--GMEVIIRRV  357 (526)
Q Consensus       287 ---~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l--~~l~~L~~L~l~-~~-~~~~~~~~~~~--~~~~~L~~L  357 (526)
                         +...+.  ....+++|+.|+++++....  ..+....  ...++|++|++. +. .+.+|...+..  ..+++|+.+
T Consensus       206 ~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~--~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l  281 (520)
T 2z7x_B          206 CSYFLSILA--KLQTNPKLSNLTLNNIETTW--NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH  281 (520)
T ss_dssp             THHHHHHHH--GGGGCTTCCEEEEEEEEEEH--HHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEE
T ss_pred             cceeecchh--hhccccchhhccccccccCH--HHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEec
Confidence               111111  11234566666665543222  1111111  124578888887 44 33444332111  344555555


Q ss_pred             Eec-cCceeeccc------------------------c-ccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCC
Q 039042          358 FRC-YDLKYILKQ------------------------E-SSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNG  411 (526)
Q Consensus       358 ~l~-~~l~~~~~~------------------------~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~  411 (526)
                      ++. +.+ .++..                        . ...+++|++|++++|......+..+..+++|+.|+++++ +
T Consensus       282 ~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~  359 (520)
T 2z7x_B          282 QVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN-Q  359 (520)
T ss_dssp             EEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSS-C
T ss_pred             cccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCC-c
Confidence            555 333 22210                        1 156789999999998766656777888999999999987 5


Q ss_pred             cccccc-hHHHhhcccccEEEEccccccce-ecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCc
Q 039042          412 LKNVLT-FSIAKTLVRLREMKIESCAMITE-IVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSL  489 (526)
Q Consensus       412 l~~~~~-~~~~~~l~~L~~L~i~~c~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L  489 (526)
                      ++.++. +..+..+++|++|+++++. +.. ++..           .+..+++|++|+++++.--..++..  +  .++|
T Consensus       360 l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~-----------~~~~l~~L~~L~Ls~N~l~~~~~~~--l--~~~L  423 (520)
T 2z7x_B          360 LKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKG-----------DCSWTKSLLSLNMSSNILTDTIFRC--L--PPRI  423 (520)
T ss_dssp             CCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGC-----------SCCCCTTCCEEECCSSCCCGGGGGS--C--CTTC
T ss_pred             cCccccchHHHhhCCCCCEEECCCCc-CCcccccc-----------hhccCccCCEEECcCCCCCcchhhh--h--cccC
Confidence            665431 2457789999999999965 444 5543           1235789999999987543444443  1  2799


Q ss_pred             cEEeEecCCCccccCCCCCCCcccceEEec
Q 039042          490 ERLLVDDCTNMKGFSRGELSTPVLHKVQLN  519 (526)
Q Consensus       490 ~~L~l~~C~~l~~l~~~~~~~~~L~~l~l~  519 (526)
                      +.|++++| +++.+|.....+++|++|+++
T Consensus       424 ~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~  452 (520)
T 2z7x_B          424 KVLDLHSN-KIKSIPKQVVKLEALQELNVA  452 (520)
T ss_dssp             CEEECCSS-CCCCCCGGGGGCTTCCEEECC
T ss_pred             CEEECCCC-cccccchhhhcCCCCCEEECC
Confidence            99999997 688998877789999999998

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.89  E-value=1.7e-21  Score=208.70  Aligned_cols=426  Identities=12%  Similarity=0.005  Sum_probs=223.3

Q ss_pred             ccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhcccccccchhhhh
Q 039042           51 EDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANISNTLFLE  128 (526)
Q Consensus        51 ~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~  128 (526)
                      .+++.++|+++.++.++.. ...++++|++|+|++|.....|...+.++++|++  ++++. ++.++..     .+..++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~-~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~-----~f~~L~  124 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALG-----AFSGLS  124 (635)
T ss_dssp             TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGG-----GGTTCT
T ss_pred             cCCCEEEeeCCCCCCCCHH-HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHH-----HhcCCC
Confidence            3677788887777777643 3456788888888887665556666777888888  55543 4444321     112377


Q ss_pred             hhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhh
Q 039042          129 KLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEE  208 (526)
Q Consensus       129 ~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~  208 (526)
                      +|++|++++|.++.+    +...++.+++|++|++++|.....-.|..++   .+++|++|++++| .+..++......-
T Consensus       125 ~L~~L~Ls~N~l~~l----~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~---~l~~L~~L~L~~N-~l~~~~~~~l~~L  196 (635)
T 4g8a_A          125 SLQKLVAVETNLASL----ENFPIGHLKTLKELNVAHNLIQSFKLPEYFS---NLTNLEHLDLSSN-KIQSIYCTDLRVL  196 (635)
T ss_dssp             TCCEEECTTSCCCCS----TTCCCTTCTTCCEEECCSSCCCCCCCCGGGG---GCTTCCEEECCSS-CCCEECGGGGHHH
T ss_pred             CCCEEECCCCcCCCC----ChhhhhcCcccCeeccccCccccCCCchhhc---cchhhhhhcccCc-cccccccccccch
Confidence            788888888876654    2111457788888888876432211244433   6777888888776 4444332111000


Q ss_pred             ------------------hcccccccccccceeecccCc------------------------------ccccc------
Q 039042          209 ------------------ERKNNIVMFPQLQYLKMYDLE------------------------------KLTSF------  234 (526)
Q Consensus       209 ------------------~~~~~~~~l~~L~~L~l~~~~------------------------------~l~~~------  234 (526)
                                        ...+.......++.+++.+..                              .+...      
T Consensus       197 ~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~  276 (635)
T 4g8a_A          197 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE  276 (635)
T ss_dssp             HTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTG
T ss_pred             hhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccc
Confidence                              000000001111112111100                              00000      


Q ss_pred             -------------------ccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccc------
Q 039042          235 -------------------CTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIIT------  289 (526)
Q Consensus       235 -------------------~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------  289 (526)
                                         .........+++++.+.+.++. +..+...       ....+|+.|++.++.+..      
T Consensus       277 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~~l  348 (635)
T 4g8a_A          277 GLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVT-IERVKDF-------SYNFGWQHLELVNCKFGQFPTLKL  348 (635)
T ss_dssp             GGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCE-EEECGGG-------GSCCCCSEEEEESCEESSCCCCBC
T ss_pred             cccchhhhhhhhhhhcccccchhhhhhhhcccccccccccc-ccccccc-------ccchhhhhhhcccccccCcCcccc
Confidence                               0000002233455555555442 2222111       123344444444332210      


Q ss_pred             ------------cceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceE
Q 039042          290 ------------NKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRR  356 (526)
Q Consensus       290 ------------~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~  356 (526)
                                  .........+++|+.++++.+.... ..........+.+|+.+++. +.....+..   ...+++|+.
T Consensus       349 ~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~---~~~l~~L~~  424 (635)
T 4g8a_A          349 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF-KGCCSQSDFGTISLKYLDLSFNGVITMSSN---FLGLEQLEH  424 (635)
T ss_dssp             TTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBE-EEECCHHHHSCSCCCEEECCSCSEEEECSC---CTTCTTCCE
T ss_pred             hhhhhcccccccCCCCcccccccccccchhhcccccc-ccccccchhhhhhhhhhhcccccccccccc---ccccccccc
Confidence                        0011122245667777776654332 01112234456667777666 221111111   144567777


Q ss_pred             EEec-cCceee-ccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEcc
Q 039042          357 VFRC-YDLKYI-LKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIES  434 (526)
Q Consensus       357 L~l~-~~l~~~-~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~  434 (526)
                      +.+. .+.... ....+..+.+++.++++.+......+.....+++|+.|+++++.......+ ..+..+++|++|++++
T Consensus       425 l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~-~~~~~l~~L~~L~Ls~  503 (635)
T 4g8a_A          425 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQ  503 (635)
T ss_dssp             EECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTT
T ss_pred             hhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCc-hhhhhccccCEEECCC
Confidence            7776 333332 234556677777777777654444444556677888888877644443322 3456677888888887


Q ss_pred             ccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCccccCCC-CCCC-cc
Q 039042          435 CAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRG-ELST-PV  512 (526)
Q Consensus       435 c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~-~~~~-~~  512 (526)
                      | .+..++..           .+..+++|++|+++++ +++.++... +..+++|+.|+++++ +++.++.. ...+ ++
T Consensus       504 N-~L~~l~~~-----------~f~~l~~L~~L~Ls~N-~l~~l~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~  568 (635)
T 4g8a_A          504 C-QLEQLSPT-----------AFNSLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQVLDYSLN-HIMTSKKQELQHFPSS  568 (635)
T ss_dssp             S-CCCEECTT-----------TTTTCTTCCEEECTTS-CCCBCCCGG-GTTCTTCCEEECTTS-CCCBCCSSCTTCCCTT
T ss_pred             C-ccCCcChH-----------HHcCCCCCCEEECCCC-cCCCCChhH-HhCCCCCCEEECCCC-cCCCCCHHHHHhhhCc
Confidence            5 35555432           1235678888888774 577766553 566788888888874 46665544 3334 57


Q ss_pred             cceEEec
Q 039042          513 LHKVQLN  519 (526)
Q Consensus       513 L~~l~l~  519 (526)
                      |+.|+++
T Consensus       569 L~~L~L~  575 (635)
T 4g8a_A          569 LAFLNLT  575 (635)
T ss_dssp             CCEEECT
T ss_pred             CCEEEee
Confidence            8888876

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.88  E-value=4.4e-22  Score=200.35  Aligned_cols=304  Identities=14%  Similarity=0.078  Sum_probs=187.4

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      ++++++|+++++.++.+    |.+.+..+++|++|++++|. ++.+.|..+.   .+++|++|++++| .+..++...  
T Consensus        44 l~~l~~l~l~~~~l~~l----~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~---~l~~L~~L~L~~n-~l~~~~~~~--  112 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKL----PAALLDSFRQVELLNLNDLQ-IEEIDTYAFA---YAHTIQKLYMGFN-AIRYLPPHV--  112 (390)
T ss_dssp             GCCCSEEEEESCEESEE----CTHHHHHCCCCSEEECTTSC-CCEECTTTTT---TCTTCCEEECCSS-CCCCCCTTT--
T ss_pred             cCCceEEEecCCchhhC----ChhHhcccccCcEEECCCCc-ccccChhhcc---CCCCcCEEECCCC-CCCcCCHHH--
Confidence            67777888877766655    22213467788888887764 4555444444   6778888888877 454443321  


Q ss_pred             hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY  286 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  286 (526)
                             +..+++|++|+++++ .+..++...  +..+++|++|++++| .+..+++..+     ..+++|+.|++++|.
T Consensus       113 -------~~~l~~L~~L~L~~n-~l~~l~~~~--~~~l~~L~~L~L~~n-~l~~~~~~~~-----~~l~~L~~L~l~~n~  176 (390)
T 3o6n_A          113 -------FQNVPLLTVLVLERN-DLSSLPRGI--FHNTPKLTTLSMSNN-NLERIEDDTF-----QATTSLQNLQLSSNR  176 (390)
T ss_dssp             -------TTTCTTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSS-CCCBCCTTTT-----SSCTTCCEEECCSSC
T ss_pred             -------hcCCCCCCEEECCCC-ccCcCCHHH--hcCCCCCcEEECCCC-ccCccChhhc-----cCCCCCCEEECCCCc
Confidence                   146777888888764 566665542  456778888888877 4555554432     357778888887665


Q ss_pred             ccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCce
Q 039042          287 IITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLK  364 (526)
Q Consensus       287 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~  364 (526)
                      +.    .++...+++|+.|+++++.. +       .+...++|+.|++..+ ...++..     ..++|++|++. +.+.
T Consensus       177 l~----~~~~~~l~~L~~L~l~~n~l-~-------~~~~~~~L~~L~l~~n~l~~~~~~-----~~~~L~~L~l~~n~l~  239 (390)
T 3o6n_A          177 LT----HVDLSLIPSLFHANVSYNLL-S-------TLAIPIAVEELDASHNSINVVRGP-----VNVELTILKLQHNNLT  239 (390)
T ss_dssp             CS----BCCGGGCTTCSEEECCSSCC-S-------EEECCSSCSEEECCSSCCCEEECC-----CCSSCCEEECCSSCCC
T ss_pred             CC----ccccccccccceeecccccc-c-------ccCCCCcceEEECCCCeeeecccc-----ccccccEEECCCCCCc
Confidence            53    23455667777777776542 2       1223456777777733 3333322     23577777777 6666


Q ss_pred             eeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceeccc
Q 039042          365 YILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLA  444 (526)
Q Consensus       365 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~  444 (526)
                      ..  ..+..+++|++|+++++......+..+..+++|+.|+++++ +++.++  .....+++|++|++++| .+..++..
T Consensus       240 ~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~--~~~~~l~~L~~L~L~~n-~l~~~~~~  313 (390)
T 3o6n_A          240 DT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALN--LYGQPIPTLKVLDLSHN-HLLHVERN  313 (390)
T ss_dssp             CC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEE--CSSSCCTTCCEEECCSS-CCCCCGGG
T ss_pred             cc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccC--cccCCCCCCCEEECCCC-cceecCcc
Confidence            54  35566777777777777544333445566777777777776 555554  23355677777777775 35555433


Q ss_pred             ccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecC
Q 039042          445 DDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDC  497 (526)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C  497 (526)
                                  +..+++|++|+++++ .++.++.    ..+++|++|+++++
T Consensus       314 ------------~~~l~~L~~L~L~~N-~i~~~~~----~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          314 ------------QPQFDRLENLYLDHN-SIVTLKL----STHHTLKNLTLSHN  349 (390)
T ss_dssp             ------------HHHHTTCSEEECCSS-CCCCCCC----CTTCCCSEEECCSS
T ss_pred             ------------ccccCcCCEEECCCC-ccceeCc----hhhccCCEEEcCCC
Confidence                        224677777777764 3555543    34677777777764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.88  E-value=6.9e-22  Score=203.12  Aligned_cols=348  Identities=11%  Similarity=0.058  Sum_probs=239.6

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      .++|++|++++|.++.+.   +.. +..+++|++|++++|.....+.|..+.   .+++|++|++++| .+..+....  
T Consensus        29 ~~~l~~L~Ls~n~i~~~~---~~~-~~~l~~L~~L~L~~n~~~~~i~~~~~~---~l~~L~~L~Ls~n-~l~~~~~~~--   98 (455)
T 3v47_A           29 PAHVNYVDLSLNSIAELN---ETS-FSRLQDLQFLKVEQQTPGLVIRNNTFR---GLSSLIILKLDYN-QFLQLETGA--   98 (455)
T ss_dssp             CTTCCEEECCSSCCCEEC---TTT-TSSCTTCCEEECCCCSTTCEECTTTTT---TCTTCCEEECTTC-TTCEECTTT--
T ss_pred             CCccCEEEecCCccCcCC---hhH-hccCccccEEECcCCcccceECccccc---ccccCCEEeCCCC-ccCccChhh--
Confidence            578999999999887652   222 668999999999998765555555555   7999999999999 455543221  


Q ss_pred             hhhcccccccccccceeecccCccccc-cccCcccccCCCCccEEEeccCCCceecccc-ccCCccccccCCcceEEEee
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTS-FCTGDVHMLEFPSLKELWISRCPEFMVRFKR-TTNDLTKKVFPNLEELIVDA  284 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~~~~l~~L~~L~l~~  284 (526)
                             +..+++|++|+++++. +.+ .+.. ..+..+++|++|++++| .+..+.+. ++     ..+++|++|++++
T Consensus        99 -------~~~l~~L~~L~L~~n~-l~~~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-----~~l~~L~~L~L~~  163 (455)
T 3v47_A           99 -------FNGLANLEVLTLTQCN-LDGAVLSG-NFFKPLTSLEMLVLRDN-NIKKIQPASFF-----LNMRRFHVLDLTF  163 (455)
T ss_dssp             -------TTTCTTCCEEECTTSC-CBTHHHHS-STTTTCTTCCEEECCSS-BCCSCCCCGGG-----GGCTTCCEEECTT
T ss_pred             -------ccCcccCCEEeCCCCC-CCccccCc-ccccCcccCCEEECCCC-ccCccCccccc-----CCCCcccEEeCCC
Confidence                   2679999999999864 443 2222 23668999999999999 45555433 22     4789999999998


Q ss_pred             ccccccce-eccccccccccEEEeeeCCcccccccchhH--------hhcCCCccEEEEe-ec-cccccCCCcCcccccc
Q 039042          285 EYIITNKF-IFSEDLLCKLKCLDVEFVDELTTILSLDDF--------LQRFPTLKVLQIE-GY-SDWLPKEKVENGMEVI  353 (526)
Q Consensus       285 ~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--------l~~l~~L~~L~l~-~~-~~~~~~~~~~~~~~~~  353 (526)
                      |.+..... .+..-...+|+.|+++++....   ++...        +..+++|++|+++ +. ....+.........++
T Consensus       164 n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~---~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~  240 (455)
T 3v47_A          164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQD---MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK  240 (455)
T ss_dssp             CCBSCCCTTTSGGGTTCEEEEEECTTCBCTT---CSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCC
T ss_pred             CcccccChhhhhccccccccccccccCcccc---cchhhccccccccccccceeeeEecCCCcccccchhhhhccccccc
Confidence            76632110 1111122688999998876443   22111        2345789999998 43 2222211110112378


Q ss_pred             ceEEEec-cCce----------eeccccccc--cCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHH
Q 039042          354 IRRVFRC-YDLK----------YILKQESSI--MNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSI  420 (526)
Q Consensus       354 L~~L~l~-~~l~----------~~~~~~~~~--l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  420 (526)
                      |+.|.+. +...          ......+..  .++|+.|++++|......+..+..+++|++|+++++ .+...+. ..
T Consensus       241 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~  318 (455)
T 3v47_A          241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-EINKIDD-NA  318 (455)
T ss_dssp             EEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECT-TT
T ss_pred             eeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCC-cccccCh-hH
Confidence            8999887 3221          111112222  368999999998766666667788999999999998 5666543 35


Q ss_pred             HhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCc
Q 039042          421 AKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNM  500 (526)
Q Consensus       421 ~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l  500 (526)
                      +..+++|++|++++|. +..++..           .+..+++|++|+++++ .++.++... +..+++|++|++++| ++
T Consensus       319 ~~~l~~L~~L~Ls~N~-l~~~~~~-----------~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l  383 (455)
T 3v47_A          319 FWGLTHLLKLNLSQNF-LGSIDSR-----------MFENLDKLEVLDLSYN-HIRALGDQS-FLGLPNLKELALDTN-QL  383 (455)
T ss_dssp             TTTCTTCCEEECCSSC-CCEECGG-----------GGTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CC
T ss_pred             hcCcccCCEEECCCCc-cCCcChh-----------HhcCcccCCEEECCCC-cccccChhh-ccccccccEEECCCC-cc
Confidence            6788999999999964 5555332           1235799999999986 566664443 678999999999995 68


Q ss_pred             cccCCCC-CCCcccceEEec
Q 039042          501 KGFSRGE-LSTPVLHKVQLN  519 (526)
Q Consensus       501 ~~l~~~~-~~~~~L~~l~l~  519 (526)
                      +.+|... ..+++|++|+++
T Consensus       384 ~~~~~~~~~~l~~L~~L~l~  403 (455)
T 3v47_A          384 KSVPDGIFDRLTSLQKIWLH  403 (455)
T ss_dssp             SCCCTTTTTTCTTCCEEECC
T ss_pred             ccCCHhHhccCCcccEEEcc
Confidence            8888764 568999999998

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.88  E-value=8.2e-22  Score=198.32  Aligned_cols=306  Identities=18%  Similarity=0.118  Sum_probs=168.1

Q ss_pred             cCCcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccccccchhhhhhhhhhcccccccccccccccccccc
Q 039042           74 GSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTC  153 (526)
Q Consensus        74 ~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~  153 (526)
                      .++++++|+++++.....|...+.+                            +++|++|++++|.++.+...   . +.
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~----------------------------l~~L~~L~L~~n~i~~~~~~---~-~~   90 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDS----------------------------FRQVELLNLNDLQIEEIDTY---A-FA   90 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHH----------------------------CCCCSEEECTTSCCCEECTT---T-TT
T ss_pred             ccCCceEEEecCCchhhCChhHhcc----------------------------cccCcEEECCCCcccccChh---h-cc
Confidence            5678888888887654446655545                            34444555555544433111   1 33


Q ss_pred             cCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccc
Q 039042          154 GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTS  233 (526)
Q Consensus       154 ~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~  233 (526)
                      .+++|++|++++|. ++.++|..+.   .+++|++|++++| .+..++...         +..+++|++|+++++ .+..
T Consensus        91 ~l~~L~~L~L~~n~-l~~~~~~~~~---~l~~L~~L~L~~n-~l~~l~~~~---------~~~l~~L~~L~L~~n-~l~~  155 (390)
T 3o6n_A           91 YAHTIQKLYMGFNA-IRYLPPHVFQ---NVPLLTVLVLERN-DLSSLPRGI---------FHNTPKLTTLSMSNN-NLER  155 (390)
T ss_dssp             TCTTCCEEECCSSC-CCCCCTTTTT---TCTTCCEEECCSS-CCCCCCTTT---------TTTCTTCCEEECCSS-CCCB
T ss_pred             CCCCcCEEECCCCC-CCcCCHHHhc---CCCCCCEEECCCC-ccCcCCHHH---------hcCCCCCcEEECCCC-ccCc
Confidence            45555555555542 3333333332   4555555555554 333333221         023455555555543 2333


Q ss_pred             cccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCcc
Q 039042          234 FCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDEL  313 (526)
Q Consensus       234 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  313 (526)
                      ++...  +..+++|++|+++++ .+..++.        ..+++|++|+++++.+..    ++  ..++|++|+++++...
T Consensus       156 ~~~~~--~~~l~~L~~L~l~~n-~l~~~~~--------~~l~~L~~L~l~~n~l~~----~~--~~~~L~~L~l~~n~l~  218 (390)
T 3o6n_A          156 IEDDT--FQATTSLQNLQLSSN-RLTHVDL--------SLIPSLFHANVSYNLLST----LA--IPIAVEELDASHNSIN  218 (390)
T ss_dssp             CCTTT--TSSCTTCCEEECCSS-CCSBCCG--------GGCTTCSEEECCSSCCSE----EE--CCSSCSEEECCSSCCC
T ss_pred             cChhh--ccCCCCCCEEECCCC-cCCcccc--------ccccccceeecccccccc----cC--CCCcceEEECCCCeee
Confidence            32221  344555555555554 2333221        234555555555443311    11  1234555555554322


Q ss_pred             cccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccc
Q 039042          314 TTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINL  391 (526)
Q Consensus       314 ~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l  391 (526)
                      .   ++.   ...++|+.|++. +.....+  .  ...+++|++|+++ +.+..+.+..+..+++|+.|++++| .+..+
T Consensus       219 ~---~~~---~~~~~L~~L~l~~n~l~~~~--~--l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~  287 (390)
T 3o6n_A          219 V---VRG---PVNVELTILKLQHNNLTDTA--W--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVAL  287 (390)
T ss_dssp             E---EEC---CCCSSCCEEECCSSCCCCCG--G--GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEE
T ss_pred             e---ccc---cccccccEEECCCCCCcccH--H--HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCccc
Confidence            2   121   123455555555 2211111  1  1455677777777 7777777777888899999999887 45556


Q ss_pred             cCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCC
Q 039042          392 VPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNL  471 (526)
Q Consensus       392 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  471 (526)
                      +.....+++|++|+++++ .+..++  ..+..+++|+.|+++++. +..++.              ..+++|+.|+++++
T Consensus       288 ~~~~~~l~~L~~L~L~~n-~l~~~~--~~~~~l~~L~~L~L~~N~-i~~~~~--------------~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          288 NLYGQPIPTLKVLDLSHN-HLLHVE--RNQPQFDRLENLYLDHNS-IVTLKL--------------STHHTLKNLTLSHN  349 (390)
T ss_dssp             ECSSSCCTTCCEEECCSS-CCCCCG--GGHHHHTTCSEEECCSSC-CCCCCC--------------CTTCCCSEEECCSS
T ss_pred             CcccCCCCCCCEEECCCC-cceecC--ccccccCcCCEEECCCCc-cceeCc--------------hhhccCCEEEcCCC
Confidence            666677899999999988 677665  345678999999999865 555432              25689999999885


Q ss_pred             c
Q 039042          472 K  472 (526)
Q Consensus       472 ~  472 (526)
                      +
T Consensus       350 ~  350 (390)
T 3o6n_A          350 D  350 (390)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.88  E-value=8.5e-21  Score=196.19  Aligned_cols=297  Identities=19%  Similarity=0.161  Sum_probs=153.8

Q ss_pred             CCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCcccccc
Q 039042          155 IQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSF  234 (526)
Q Consensus       155 l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~  234 (526)
                      .++++.|++++|. ++.+.|..+.   .+++|++|++++| .+..+....         +..+++|++|+++++ .+..+
T Consensus        31 ~~~l~~L~L~~n~-l~~~~~~~~~---~l~~L~~L~L~~n-~i~~~~~~~---------~~~l~~L~~L~L~~n-~l~~~   95 (477)
T 2id5_A           31 PTETRLLDLGKNR-IKTLNQDEFA---SFPHLEELELNEN-IVSAVEPGA---------FNNLFNLRTLGLRSN-RLKLI   95 (477)
T ss_dssp             CTTCSEEECCSSC-CCEECTTTTT---TCTTCCEEECTTS-CCCEECTTT---------TTTCTTCCEEECCSS-CCCSC
T ss_pred             CCCCcEEECCCCc-cceECHhHcc---CCCCCCEEECCCC-ccCEeChhh---------hhCCccCCEEECCCC-cCCcc
Confidence            3456666666643 4444344433   5666666666666 444432211         145666666666653 45555


Q ss_pred             ccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCccc
Q 039042          235 CTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELT  314 (526)
Q Consensus       235 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  314 (526)
                      +...  +..+++|++|++++| .+..+++..+     ..+++|++|++++|.+.. +..-....+++|++|++++|.. +
T Consensus        96 ~~~~--~~~l~~L~~L~Ls~n-~i~~~~~~~~-----~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l-~  165 (477)
T 2id5_A           96 PLGV--FTGLSNLTKLDISEN-KIVILLDYMF-----QDLYNLKSLEVGDNDLVY-ISHRAFSGLNSLEQLTLEKCNL-T  165 (477)
T ss_dssp             CTTS--STTCTTCCEEECTTS-CCCEECTTTT-----TTCTTCCEEEECCTTCCE-ECTTSSTTCTTCCEEEEESCCC-S
T ss_pred             Cccc--ccCCCCCCEEECCCC-ccccCChhHc-----cccccCCEEECCCCccce-eChhhccCCCCCCEEECCCCcC-c
Confidence            4432  445666667766666 3444433222     256666666666554421 1111122455666666666542 2


Q ss_pred             ccccchhHhhcCCCccEEEEeeccccccCCCcCccccccceEEEeccCceeeccccccccCcccEEEEeccCCcccccCC
Q 039042          315 TILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVFRCYDLKYILKQESSIMNNLVILHVTNCHRLINLVPS  394 (526)
Q Consensus       315 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~  394 (526)
                        .++...+..+++|+.|++..                        +.+..+.+..+..+++|+.|++++|..+..++..
T Consensus       166 --~~~~~~l~~l~~L~~L~l~~------------------------n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  219 (477)
T 2id5_A          166 --SIPTEALSHLHGLIVLRLRH------------------------LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN  219 (477)
T ss_dssp             --SCCHHHHTTCTTCCEEEEES------------------------CCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT
T ss_pred             --ccChhHhcccCCCcEEeCCC------------------------CcCcEeChhhcccCcccceeeCCCCccccccCcc
Confidence              34444566666666666652                        2333333334455556666666666555555554


Q ss_pred             CccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccc
Q 039042          395 STSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSL  474 (526)
Q Consensus       395 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  474 (526)
                      .....+|++|+++++ +++.++. ..+..+++|+.|+++++. +..++..           .+..+++|++|+++++ .+
T Consensus       220 ~~~~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~-----------~~~~l~~L~~L~L~~n-~l  284 (477)
T 2id5_A          220 CLYGLNLTSLSITHC-NLTAVPY-LAVRHLVYLRFLNLSYNP-ISTIEGS-----------MLHELLRLQEIQLVGG-QL  284 (477)
T ss_dssp             TTTTCCCSEEEEESS-CCCSCCH-HHHTTCTTCCEEECCSSC-CCEECTT-----------SCTTCTTCCEEECCSS-CC
T ss_pred             cccCccccEEECcCC-cccccCH-HHhcCccccCeeECCCCc-CCccChh-----------hccccccCCEEECCCC-cc
Confidence            444456666666665 4554432 244556666666666543 3333321           1224556666666653 34


Q ss_pred             cccCCCCccccCCCccEEeEecCCCccccCCCC-CCCcccceEEec
Q 039042          475 RSFYSGNRALNFPSLERLLVDDCTNMKGFSRGE-LSTPVLHKVQLN  519 (526)
Q Consensus       475 ~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~-~~~~~L~~l~l~  519 (526)
                      +.+.... +..+++|++|++++| +++.++... ..+++|++|+++
T Consensus       285 ~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~  328 (477)
T 2id5_A          285 AVVEPYA-FRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILD  328 (477)
T ss_dssp             SEECTTT-BTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECC
T ss_pred             ceECHHH-hcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEcc
Confidence            4443332 445566666666664 455555432 345566666665

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.88  E-value=1.8e-21  Score=192.58  Aligned_cols=301  Identities=11%  Similarity=0.120  Sum_probs=187.6

Q ss_pred             hhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecc
Q 039042          126 FLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDN  205 (526)
Q Consensus       126 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~  205 (526)
                      .+++|++|+++++.++.+-     + +..+++|++|++++|. ++.+ |. +.   .+++|++|++++| .+..++.   
T Consensus        42 ~l~~L~~L~l~~~~i~~~~-----~-~~~~~~L~~L~l~~n~-i~~~-~~-~~---~l~~L~~L~L~~n-~i~~~~~---  105 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQ-----G-IEYLTNLEYLNLNGNQ-ITDI-SP-LS---NLVKLTNLYIGTN-KITDISA---  105 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCT-----T-GGGCTTCCEEECCSSC-CCCC-GG-GT---TCTTCCEEECCSS-CCCCCGG---
T ss_pred             hcccccEEEEeCCccccch-----h-hhhcCCccEEEccCCc-cccc-hh-hh---cCCcCCEEEccCC-cccCchH---
Confidence            4788888888888776541     1 4578889999998874 4444 32 33   7888899998888 5555431   


Q ss_pred             hhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeec
Q 039042          206 QEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAE  285 (526)
Q Consensus       206 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  285 (526)
                              +..+++|++|+++++ .+..++.    +..+++|++|++++|..+..++. +      ..+++|++|+++++
T Consensus       106 --------~~~l~~L~~L~l~~n-~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~~-~------~~l~~L~~L~l~~~  165 (347)
T 4fmz_A          106 --------LQNLTNLRELYLNED-NISDISP----LANLTKMYSLNLGANHNLSDLSP-L------SNMTGLNYLTVTES  165 (347)
T ss_dssp             --------GTTCTTCSEEECTTS-CCCCCGG----GTTCTTCCEEECTTCTTCCCCGG-G------TTCTTCCEEECCSS
T ss_pred             --------HcCCCcCCEEECcCC-cccCchh----hccCCceeEEECCCCCCcccccc-h------hhCCCCcEEEecCC
Confidence                    267888888888875 4555432    45788888888888866665443 2      46788888888876


Q ss_pred             cccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cCc
Q 039042          286 YIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDL  363 (526)
Q Consensus       286 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l  363 (526)
                      .+..   ..+...+++|++|++++|....   ++  .+..+++|+.+++. +.....+.    ...+++|++|++. +.+
T Consensus       166 ~~~~---~~~~~~l~~L~~L~l~~n~l~~---~~--~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l  233 (347)
T 4fmz_A          166 KVKD---VTPIANLTDLYSLSLNYNQIED---IS--PLASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKI  233 (347)
T ss_dssp             CCCC---CGGGGGCTTCSEEECTTSCCCC---CG--GGGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCC
T ss_pred             CcCC---chhhccCCCCCEEEccCCcccc---cc--cccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCcc
Confidence            5532   1124467788888888765432   22  26677788888777 32221111    1455677777777 666


Q ss_pred             eeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecc
Q 039042          364 KYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVL  443 (526)
Q Consensus       364 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~  443 (526)
                      ..+++  +..+++|++|++++|. +..+ +.+..+++|++|++++| .++.++   .+..+++|++|++++|......+.
T Consensus       234 ~~~~~--~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~l~~n-~l~~~~---~~~~l~~L~~L~L~~n~l~~~~~~  305 (347)
T 4fmz_A          234 TDLSP--LANLSQLTWLEIGTNQ-ISDI-NAVKDLTKLKMLNVGSN-QISDIS---VLNNLSQLNSLFLNNNQLGNEDME  305 (347)
T ss_dssp             CCCGG--GTTCTTCCEEECCSSC-CCCC-GGGTTCTTCCEEECCSS-CCCCCG---GGGGCTTCSEEECCSSCCCGGGHH
T ss_pred             CCCcc--hhcCCCCCEEECCCCc-cCCC-hhHhcCCCcCEEEccCC-ccCCCh---hhcCCCCCCEEECcCCcCCCcChh
Confidence            66543  5566777777777663 3333 23556667777777766 455543   345667777777776542222221


Q ss_pred             cccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCC
Q 039042          444 ADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCT  498 (526)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~  498 (526)
                      .            +..+++|++|++++|+ ++.++.   +..+++|++|++++|+
T Consensus       306 ~------------l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          306 V------------IGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV  344 (347)
T ss_dssp             H------------HHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred             H------------hhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence            1            2245677777777654 444433   3456777777776653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.87  E-value=5.5e-21  Score=201.75  Aligned_cols=384  Identities=11%  Similarity=0.071  Sum_probs=229.7

Q ss_pred             eecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccccccchhhhhhhhhh
Q 039042           54 ELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEKLEKL  133 (526)
Q Consensus        54 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~l~~L~~L  133 (526)
                      +.++++++++..+|..    -.++|++|++++|.....|...+++                            +++|++|
T Consensus        34 ~~l~ls~~~L~~ip~~----~~~~L~~L~Ls~N~i~~~~~~~~~~----------------------------l~~L~~L   81 (562)
T 3a79_B           34 SMVDYSNRNLTHVPKD----LPPRTKALSLSQNSISELRMPDISF----------------------------LSELRVL   81 (562)
T ss_dssp             CEEECTTSCCCSCCTT----SCTTCCEEECCSSCCCCCCGGGTTT----------------------------CTTCCEE
T ss_pred             cEEEcCCCCCccCCCC----CCCCcCEEECCCCCccccChhhhcc----------------------------CCCccEE
Confidence            5667777777666652    4678888888888766554432322                            7788899


Q ss_pred             cccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEE--eecchhhhcc
Q 039042          134 ELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELI--VVDNQEEERK  211 (526)
Q Consensus       134 ~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~--~~~~~~~~~~  211 (526)
                      ++++|.++.+..   .. +..+++|++|++++|. ++.+ |..     .+++|++|++++| .+..++  ..+       
T Consensus        82 ~Ls~N~l~~~~~---~~-~~~l~~L~~L~Ls~N~-l~~l-p~~-----~l~~L~~L~Ls~N-~l~~l~~p~~~-------  142 (562)
T 3a79_B           82 RLSHNRIRSLDF---HV-FLFNQDLEYLDVSHNR-LQNI-SCC-----PMASLRHLDLSFN-DFDVLPVCKEF-------  142 (562)
T ss_dssp             ECCSCCCCEECT---TT-TTTCTTCCEEECTTSC-CCEE-CSC-----CCTTCSEEECCSS-CCSBCCCCGGG-------
T ss_pred             ECCCCCCCcCCH---HH-hCCCCCCCEEECCCCc-CCcc-Ccc-----ccccCCEEECCCC-CccccCchHhh-------
Confidence            999998775522   22 5578999999999875 5555 432     5889999999998 555543  222       


Q ss_pred             cccccccccceeecccCccccccccCcccccCCCCc--cEEEeccCCCc-eeccccccCC--------------------
Q 039042          212 NNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSL--KELWISRCPEF-MVRFKRTTND--------------------  268 (526)
Q Consensus       212 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L--~~L~l~~c~~l-~~~~~~~~~~--------------------  268 (526)
                         +.+++|++|+++++ .+....     +..+++|  ++|++++|... ....+..+..                    
T Consensus       143 ---~~l~~L~~L~L~~n-~l~~~~-----~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~  213 (562)
T 3a79_B          143 ---GNLTKLTFLGLSAA-KFRQLD-----LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQV  213 (562)
T ss_dssp             ---GGCTTCCEEEEECS-BCCTTT-----TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCC
T ss_pred             ---cccCcccEEecCCC-ccccCc-----hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhh
Confidence               67889999999874 444321     3455666  99999887330 2111111000                    


Q ss_pred             -ccccccCCcceEEEeecccc-cccee-c-cccccccccEEEeeeCCcccccccc-hhHhhcCCCccEEEEe-ec-cccc
Q 039042          269 -LTKKVFPNLEELIVDAEYII-TNKFI-F-SEDLLCKLKCLDVEFVDELTTILSL-DDFLQRFPTLKVLQIE-GY-SDWL  341 (526)
Q Consensus       269 -~~~~~l~~L~~L~l~~~~~~-~~~~~-~-~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~l~~L~~L~l~-~~-~~~~  341 (526)
                       .....+++|+.++++++... ..+.. + .....++|+.+++.++..-. ..+. .......++|++|++. +. .+.+
T Consensus       214 ~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~i  292 (562)
T 3a79_B          214 NMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW-KCSVKLFQFFWPRPVEYLNIYNLTITERI  292 (562)
T ss_dssp             EEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH-HHHHHHHHHHTTSSEEEEEEEEEEECSCC
T ss_pred             hhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH-HHHHHHHHhhhcccccEEEEeccEeeccc
Confidence             00012233333444322100 00000 0 00123344444444332111 0000 0011123478888887 44 3344


Q ss_pred             cCCCcCc--cccc--------------------------cceEEEec-cCceeeccccccccCcccEEEEeccCCccccc
Q 039042          342 PKEKVEN--GMEV--------------------------IIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLV  392 (526)
Q Consensus       342 ~~~~~~~--~~~~--------------------------~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~  392 (526)
                      |...+..  ..++                          +|++|++. +.+..+.  ....+++|++|+++++......+
T Consensus       293 p~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~  370 (562)
T 3a79_B          293 DREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVF  370 (562)
T ss_dssp             CCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTT
T ss_pred             cchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchh
Confidence            4332110  1122                          24444444 3332221  11567899999999987666566


Q ss_pred             CCCccCCCcCEEEEccCCCcccccc-hHHHhhcccccEEEEccccccce-ecccccCCcccccCCCeeeeCccCeEecCC
Q 039042          393 PSSTSFQNLTSLEISYCNGLKNVLT-FSIAKTLVRLREMKIESCAMITE-IVLADDDDDHDAAKDEVIAFSELNELKLLN  470 (526)
Q Consensus       393 ~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~i~~c~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  470 (526)
                      ..+..+++|+.|+++++ +++.++. +..+..+++|+.|+++++. +.. ++..           .+..+++|++|++++
T Consensus       371 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~-----------~~~~l~~L~~L~l~~  437 (562)
T 3a79_B          371 QGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDR-----------TCAWAESILVLNLSS  437 (562)
T ss_dssp             TTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSC-----------CCCCCTTCCEEECCS
T ss_pred             hhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CCCccChh-----------hhcCcccCCEEECCC
Confidence            77788999999999987 6776542 2346788999999999965 443 5442           233579999999998


Q ss_pred             CccccccCCCCccccC-CCccEEeEecCCCccccCCCCCCCcccceEEec
Q 039042          471 LKSLRSFYSGNRALNF-PSLERLLVDDCTNMKGFSRGELSTPVLHKVQLN  519 (526)
Q Consensus       471 ~~~l~~l~~~~~~~~~-~~L~~L~l~~C~~l~~l~~~~~~~~~L~~l~l~  519 (526)
                      +.--..++..     + ++|++|++++| +++.+|.+...+++|++|+++
T Consensus       438 n~l~~~~~~~-----l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~  481 (562)
T 3a79_B          438 NMLTGSVFRC-----LPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVA  481 (562)
T ss_dssp             SCCCGGGGSS-----CCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECC
T ss_pred             CCCCcchhhh-----hcCcCCEEECCCC-cCcccChhhcCCCCCCEEECC
Confidence            7533444433     3 69999999997 789999887789999999998

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.87  E-value=1e-21  Score=203.13  Aligned_cols=303  Identities=16%  Similarity=0.085  Sum_probs=175.3

Q ss_pred             ccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhcccccccchhhhhhhhhhccccc
Q 039042           61 QDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANISNTLFLEKLEKLELRSI  138 (526)
Q Consensus        61 ~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~  138 (526)
                      .+...+|..    -.+++++|++++|.....+...+.++++|++  +.++. +..+..     ..+..+++|++|+|++|
T Consensus        21 ~~l~~ip~~----~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~-----~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           21 KRFVAVPEG----IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEP-----GAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             CCCSSCCSC----CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECT-----TTTTTCTTCCEEECCSS
T ss_pred             CCcCcCCCC----CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc-cCEeCh-----hhhhCCccCCEEECCCC
Confidence            344445542    2357788888877655554444666666666  44432 222211     11123677778888777


Q ss_pred             ccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhccccccccc
Q 039042          139 NIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFP  218 (526)
Q Consensus       139 ~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~  218 (526)
                      .++.+    +.+.+..+++|++|++++|. ++.+.|..+.   .+++|++|++++| .+..++...         +..++
T Consensus        91 ~l~~~----~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~---~l~~L~~L~l~~n-~l~~~~~~~---------~~~l~  152 (477)
T 2id5_A           91 RLKLI----PLGVFTGLSNLTKLDISENK-IVILLDYMFQ---DLYNLKSLEVGDN-DLVYISHRA---------FSGLN  152 (477)
T ss_dssp             CCCSC----CTTSSTTCTTCCEEECTTSC-CCEECTTTTT---TCTTCCEEEECCT-TCCEECTTS---------STTCT
T ss_pred             cCCcc----CcccccCCCCCCEEECCCCc-cccCChhHcc---ccccCCEEECCCC-ccceeChhh---------ccCCC
Confidence            76654    22114467778888887764 3444454444   6777888888777 444443211         14677


Q ss_pred             ccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceecccc-
Q 039042          219 QLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSED-  297 (526)
Q Consensus       219 ~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-  297 (526)
                      +|++|+++++ .+..++...  +..+++|+.|+++++ .+..++...+     ..+++|+.|+++++...   ..++.. 
T Consensus       153 ~L~~L~l~~n-~l~~~~~~~--l~~l~~L~~L~l~~n-~i~~~~~~~~-----~~l~~L~~L~l~~~~~~---~~~~~~~  220 (477)
T 2id5_A          153 SLEQLTLEKC-NLTSIPTEA--LSHLHGLIVLRLRHL-NINAIRDYSF-----KRLYRLKVLEISHWPYL---DTMTPNC  220 (477)
T ss_dssp             TCCEEEEESC-CCSSCCHHH--HTTCTTCCEEEEESC-CCCEECTTCS-----CSCTTCCEEEEECCTTC---CEECTTT
T ss_pred             CCCEEECCCC-cCcccChhH--hcccCCCcEEeCCCC-cCcEeChhhc-----ccCcccceeeCCCCccc---cccCccc
Confidence            7888887764 455554332  556777888887777 4555544332     35677777777765432   223322 


Q ss_pred             -ccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCceeecccccccc
Q 039042          298 -LLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIM  374 (526)
Q Consensus       298 -~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l  374 (526)
                       ...+|++|++++|. ++  .++...+..+++|+.|+++.+ ...++...+  ..+++|++|++. +.+..+.+..+..+
T Consensus       221 ~~~~~L~~L~l~~n~-l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l  295 (477)
T 2id5_A          221 LYGLNLTSLSITHCN-LT--AVPYLAVRHLVYLRFLNLSYNPISTIEGSML--HELLRLQEIQLVGGQLAVVEPYAFRGL  295 (477)
T ss_dssp             TTTCCCSEEEEESSC-CC--SCCHHHHTTCTTCCEEECCSSCCCEECTTSC--TTCTTCCEEECCSSCCSEECTTTBTTC
T ss_pred             ccCccccEEECcCCc-cc--ccCHHHhcCccccCeeECCCCcCCccChhhc--cccccCCEEECCCCccceECHHHhcCc
Confidence             22377777777764 33  456556677777777777733 333333332  455667777776 66666666666666


Q ss_pred             CcccEEEEeccCCcccccC-CCccCCCcCEEEEccC
Q 039042          375 NNLVILHVTNCHRLINLVP-SSTSFQNLTSLEISYC  409 (526)
Q Consensus       375 ~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c  409 (526)
                      ++|+.|++++| .+..++. .+..+++|+.|+++++
T Consensus       296 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N  330 (477)
T 2id5_A          296 NYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSN  330 (477)
T ss_dssp             TTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSS
T ss_pred             ccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCC
Confidence            77777777666 3333333 2345566666766655

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.87  E-value=3.3e-22  Score=204.60  Aligned_cols=351  Identities=15%  Similarity=0.098  Sum_probs=174.2

Q ss_pred             HHHhccccccceeccccccccc-ccccccccccCCc-------------ccEEEEecCCCCCCchhhhhhccCccc--cc
Q 039042           43 LILQLQGIEDLELHELQEQDVN-YFANELVRVGSSQ-------------LKFLGIHGCRDALNPSAESKRQRQEES--AN  106 (526)
Q Consensus        43 ~~~~l~~~~~L~~l~l~~~~~~-~~~~~~~~~~l~~-------------L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~  106 (526)
                      +...++++.+|+.++++++.+. .+|..  .+.+.+             +++|++++|.....|..    .++|++  +.
T Consensus        26 iP~~i~~L~~L~~L~l~~n~~~~~~p~~--~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~----~~~L~~L~l~   99 (454)
T 1jl5_A           26 MPVEAENVKSKTEYYNAWSEWERNAPPG--NGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL----PPHLESLVAS   99 (454)
T ss_dssp             --------CCHHHHHHHHHHHHHTSCTT--SCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC----CTTCSEEECC
T ss_pred             CChhHhcccchhhhhccCCcccccCCcc--cccchhcchhhhhhhhccCCCEEEecCCccccCCCC----cCCCCEEEcc
Confidence            4555677777777777765543 34442  223333             47777777765444431    234554  32


Q ss_pred             ccccchhhhcccccccchhhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccc
Q 039042          107 DMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRL  186 (526)
Q Consensus       107 ~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L  186 (526)
                      ++ .+..++..         +++|++|++++|.++.+    +.    ..++|++|++++|. ++.+ |. +   +.+++|
T Consensus       100 ~n-~l~~lp~~---------~~~L~~L~l~~n~l~~l----~~----~~~~L~~L~L~~n~-l~~l-p~-~---~~l~~L  155 (454)
T 1jl5_A          100 CN-SLTELPEL---------PQSLKSLLVDNNNLKAL----SD----LPPLLEYLGVSNNQ-LEKL-PE-L---QNSSFL  155 (454)
T ss_dssp             SS-CCSSCCCC---------CTTCCEEECCSSCCSCC----CS----CCTTCCEEECCSSC-CSSC-CC-C---TTCTTC
T ss_pred             CC-cCCccccc---------cCCCcEEECCCCccCcc----cC----CCCCCCEEECcCCC-CCCC-cc-c---CCCCCC
Confidence            22 22223211         35677777777665543    11    12567777777653 3333 42 2   366777


Q ss_pred             cEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceecccccc
Q 039042          187 QYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTT  266 (526)
Q Consensus       187 ~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~  266 (526)
                      ++|++++| .+..++.             ..++|++|+++++ .+..++ .   +..+++|++|++++| .+..++.   
T Consensus       156 ~~L~l~~N-~l~~lp~-------------~~~~L~~L~L~~n-~l~~l~-~---~~~l~~L~~L~l~~N-~l~~l~~---  212 (454)
T 1jl5_A          156 KIIDVDNN-SLKKLPD-------------LPPSLEFIAAGNN-QLEELP-E---LQNLPFLTAIYADNN-SLKKLPD---  212 (454)
T ss_dssp             CEEECCSS-CCSCCCC-------------CCTTCCEEECCSS-CCSSCC-C---CTTCTTCCEEECCSS-CCSSCCC---
T ss_pred             CEEECCCC-cCcccCC-------------CcccccEEECcCC-cCCcCc-c---ccCCCCCCEEECCCC-cCCcCCC---
Confidence            77777776 4444332             2346777777664 455554 2   556777777777766 3444331   


Q ss_pred             CCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCC
Q 039042          267 NDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEK  345 (526)
Q Consensus       267 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~  345 (526)
                            ..++|+.|++++|.+. .+.  ....+++|++|++++|.. +  .+|.    .+++|+.|+++ +....++   
T Consensus       213 ------~~~~L~~L~l~~n~l~-~lp--~~~~l~~L~~L~l~~N~l-~--~l~~----~~~~L~~L~l~~N~l~~l~---  273 (454)
T 1jl5_A          213 ------LPLSLESIVAGNNILE-ELP--ELQNLPFLTTIYADNNLL-K--TLPD----LPPSLEALNVRDNYLTDLP---  273 (454)
T ss_dssp             ------CCTTCCEEECCSSCCS-SCC--CCTTCTTCCEEECCSSCC-S--SCCS----CCTTCCEEECCSSCCSCCC---
T ss_pred             ------CcCcccEEECcCCcCC-ccc--ccCCCCCCCEEECCCCcC-C--cccc----cccccCEEECCCCcccccC---
Confidence                  2346777777766553 221  123456677777766543 2  2332    23667777776 3222233   


Q ss_pred             cCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhc
Q 039042          346 VENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTL  424 (526)
Q Consensus       346 ~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l  424 (526)
                         ..+++|++|+++ +.+..++..    .++|+.|++++|. +..++.   .+++|+.|+++++ +++.++.     .+
T Consensus       274 ---~~~~~L~~L~ls~N~l~~l~~~----~~~L~~L~l~~N~-l~~i~~---~~~~L~~L~Ls~N-~l~~lp~-----~~  336 (454)
T 1jl5_A          274 ---ELPQSLTFLDVSENIFSGLSEL----PPNLYYLNASSNE-IRSLCD---LPPSLEELNVSNN-KLIELPA-----LP  336 (454)
T ss_dssp             ---CCCTTCCEEECCSSCCSEESCC----CTTCCEEECCSSC-CSEECC---CCTTCCEEECCSS-CCSCCCC-----CC
T ss_pred             ---cccCcCCEEECcCCccCcccCc----CCcCCEEECcCCc-CCcccC---CcCcCCEEECCCC-ccccccc-----cC
Confidence               123567777777 666654311    2567777777663 223321   1247777777765 4555442     24


Q ss_pred             ccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccc---cCCCCccccC-------------CC
Q 039042          425 VRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRS---FYSGNRALNF-------------PS  488 (526)
Q Consensus       425 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~---l~~~~~~~~~-------------~~  488 (526)
                      ++|+.|++++| .+..++.               .+++|++|+++++ .+..   +|..  +..+             ++
T Consensus       337 ~~L~~L~L~~N-~l~~lp~---------------~l~~L~~L~L~~N-~l~~l~~ip~~--l~~L~~n~~~~~i~~~~~~  397 (454)
T 1jl5_A          337 PRLERLIASFN-HLAEVPE---------------LPQNLKQLHVEYN-PLREFPDIPES--VEDLRMNSHLAEVPELPQN  397 (454)
T ss_dssp             TTCCEEECCSS-CCSCCCC---------------CCTTCCEEECCSS-CCSSCCCCCTT--CCEEECCC-----------
T ss_pred             CcCCEEECCCC-ccccccc---------------hhhhccEEECCCC-CCCcCCCChHH--HHhhhhcccccccccccCc
Confidence            67777777775 3554443               2467778887764 3433   3332  2223             66


Q ss_pred             ccEEeEecCCCccc
Q 039042          489 LERLLVDDCTNMKG  502 (526)
Q Consensus       489 L~~L~l~~C~~l~~  502 (526)
                      |+.|++++++ +..
T Consensus       398 L~~L~ls~N~-l~~  410 (454)
T 1jl5_A          398 LKQLHVETNP-LRE  410 (454)
T ss_dssp             --------------
T ss_pred             CCEEECCCCc-CCc
Confidence            7777777743 443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.87  E-value=1.8e-21  Score=206.63  Aligned_cols=105  Identities=21%  Similarity=0.168  Sum_probs=68.8

Q ss_pred             cccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccc
Q 039042          349 GMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRL  427 (526)
Q Consensus       349 ~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L  427 (526)
                      ..+++|++|+++ +.+..+.+..+..+++|+.|++++| .+..++.....+++|+.|++++| .+..++  ..+..+++|
T Consensus       251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~--~~~~~l~~L  326 (597)
T 3oja_B          251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVE--RNQPQFDRL  326 (597)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCCCCG--GGHHHHTTC
T ss_pred             ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCCccC--cccccCCCC
Confidence            445666666666 6666666666777777888887776 34455555566778888888776 455555  345667888


Q ss_pred             cEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCc
Q 039042          428 REMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLK  472 (526)
Q Consensus       428 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  472 (526)
                      +.|++++|. +..++.              ..+++|+.|++++++
T Consensus       327 ~~L~L~~N~-l~~~~~--------------~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          327 ENLYLDHNS-IVTLKL--------------STHHTLKNLTLSHND  356 (597)
T ss_dssp             SEEECCSSC-CCCCCC--------------CTTCCCSEEECCSSC
T ss_pred             CEEECCCCC-CCCcCh--------------hhcCCCCEEEeeCCC
Confidence            888887754 443321              246778888887754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.87  E-value=2.3e-21  Score=191.90  Aligned_cols=302  Identities=15%  Similarity=0.118  Sum_probs=179.0

Q ss_pred             ccCCcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccccccchhhhhhhhhhccccccccccccccccccc
Q 039042           73 VGSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMT  152 (526)
Q Consensus        73 ~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~  152 (526)
                      ..+++|++|++++|.....|.  +..                            +++|++|++++|.++.+..      +
T Consensus        41 ~~l~~L~~L~l~~~~i~~~~~--~~~----------------------------~~~L~~L~l~~n~i~~~~~------~   84 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASIQG--IEY----------------------------LTNLEYLNLNGNQITDISP------L   84 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCCTT--GGG----------------------------CTTCCEEECCSSCCCCCGG------G
T ss_pred             hhcccccEEEEeCCccccchh--hhh----------------------------cCCccEEEccCCccccchh------h
Confidence            357888888888876544332  222                            5556666666665554311      2


Q ss_pred             ccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCcccc
Q 039042          153 CGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLT  232 (526)
Q Consensus       153 ~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~  232 (526)
                      ..+++|++|++++|. ++.+ | .   ++.+++|++|++++| .+..++.           +..+++|++|++++|....
T Consensus        85 ~~l~~L~~L~L~~n~-i~~~-~-~---~~~l~~L~~L~l~~n-~i~~~~~-----------~~~l~~L~~L~l~~n~~~~  146 (347)
T 4fmz_A           85 SNLVKLTNLYIGTNK-ITDI-S-A---LQNLTNLRELYLNED-NISDISP-----------LANLTKMYSLNLGANHNLS  146 (347)
T ss_dssp             TTCTTCCEEECCSSC-CCCC-G-G---GTTCTTCSEEECTTS-CCCCCGG-----------GTTCTTCCEEECTTCTTCC
T ss_pred             hcCCcCCEEEccCCc-ccCc-h-H---HcCCCcCCEEECcCC-cccCchh-----------hccCCceeEEECCCCCCcc
Confidence            356666666666653 3332 2 2   225666666666665 3333322           1456666666666654444


Q ss_pred             ccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCc
Q 039042          233 SFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDE  312 (526)
Q Consensus       233 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  312 (526)
                      .++.    +..+++|++|++++| .+..++. +      ..+++|++|++++|.+.. +.  +...+++|+.++++++..
T Consensus       147 ~~~~----~~~l~~L~~L~l~~~-~~~~~~~-~------~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~n~l  211 (347)
T 4fmz_A          147 DLSP----LSNMTGLNYLTVTES-KVKDVTP-I------ANLTDLYSLSLNYNQIED-IS--PLASLTSLHYFTAYVNQI  211 (347)
T ss_dssp             CCGG----GTTCTTCCEEECCSS-CCCCCGG-G------GGCTTCSEEECTTSCCCC-CG--GGGGCTTCCEEECCSSCC
T ss_pred             cccc----hhhCCCCcEEEecCC-CcCCchh-h------ccCCCCCEEEccCCcccc-cc--cccCCCccceeecccCCC
Confidence            3321    345666666666666 3333332 1      356666666666554421 11  133456667777666543


Q ss_pred             ccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCccc
Q 039042          313 LTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLIN  390 (526)
Q Consensus       313 l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~  390 (526)
                      ..   .+  .+..+++|++|++. |....++.    ...+++|++|++. +.+..+  ..+..+++|+.|++++| .+..
T Consensus       212 ~~---~~--~~~~~~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n-~l~~  279 (347)
T 4fmz_A          212 TD---IT--PVANMTRLNSLKIGNNKITDLSP----LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSN-QISD  279 (347)
T ss_dssp             CC---CG--GGGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS-CCCC
T ss_pred             CC---Cc--hhhcCCcCCEEEccCCccCCCcc----hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCC-ccCC
Confidence            22   11  25566777777776 33222221    1456777888877 666665  35677889999999988 4444


Q ss_pred             ccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCC
Q 039042          391 LVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLN  470 (526)
Q Consensus       391 l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  470 (526)
                      + +.+..+++|+.|++++| .+...+. ..+..+++|++|++++|. +..++.             +..+++|++|++++
T Consensus       280 ~-~~~~~l~~L~~L~L~~n-~l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~~-------------~~~l~~L~~L~l~~  342 (347)
T 4fmz_A          280 I-SVLNNLSQLNSLFLNNN-QLGNEDM-EVIGGLTNLTTLFLSQNH-ITDIRP-------------LASLSKMDSADFAN  342 (347)
T ss_dssp             C-GGGGGCTTCSEEECCSS-CCCGGGH-HHHHTCTTCSEEECCSSS-CCCCGG-------------GGGCTTCSEESSSC
T ss_pred             C-hhhcCCCCCCEEECcCC-cCCCcCh-hHhhccccCCEEEccCCc-cccccC-------------hhhhhccceeehhh
Confidence            4 34677899999999988 4555432 466788999999999976 554433             12579999999998


Q ss_pred             Cc
Q 039042          471 LK  472 (526)
Q Consensus       471 ~~  472 (526)
                      ++
T Consensus       343 N~  344 (347)
T 4fmz_A          343 QV  344 (347)
T ss_dssp             C-
T ss_pred             hc
Confidence            64

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.87  E-value=2.2e-21  Score=206.07  Aligned_cols=305  Identities=14%  Similarity=0.078  Sum_probs=225.3

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      +.+++.|+++++.+..+    |.+.+..+++|++|++++|. ++.++|..++   .+++|++|++++| .+..++...  
T Consensus        50 l~~l~~l~l~~~~l~~l----p~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~---~l~~L~~L~L~~n-~l~~~~~~~--  118 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKL----PAALLDSFRQVELLNLNDLQ-IEEIDTYAFA---YAHTIQKLYMGFN-AIRYLPPHV--  118 (597)
T ss_dssp             GCCCSEEEESSCEESEE----CTHHHHHCCCCSEEECTTSC-CCEECTTTTT---TCTTCCEEECCSS-CCCCCCTTT--
T ss_pred             CCCceEEEeeCCCCCCc----CHHHHccCCCCcEEECCCCC-CCCCChHHhc---CCCCCCEEECCCC-cCCCCCHHH--
Confidence            77888899998877765    32224578999999999874 5566555555   7899999999998 465554432  


Q ss_pred             hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY  286 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  286 (526)
                             ++.+++|++|+++++ .+..++...  +..+++|++|++++| .+..+++..+     ..+++|+.|++++|.
T Consensus       119 -------~~~l~~L~~L~L~~n-~l~~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~~~~~-----~~l~~L~~L~L~~N~  182 (597)
T 3oja_B          119 -------FQNVPLLTVLVLERN-DLSSLPRGI--FHNTPKLTTLSMSNN-NLERIEDDTF-----QATTSLQNLQLSSNR  182 (597)
T ss_dssp             -------TTTCTTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSS-CCCBCCTTTT-----TTCTTCCEEECTTSC
T ss_pred             -------HcCCCCCCEEEeeCC-CCCCCCHHH--hccCCCCCEEEeeCC-cCCCCChhhh-----hcCCcCcEEECcCCC
Confidence                   257899999999985 677776652  568899999999998 5666665433     368899999999776


Q ss_pred             ccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCce
Q 039042          287 IITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLK  364 (526)
Q Consensus       287 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~  364 (526)
                      +.    .++...+++|+.|+++++.. +       .+...++|+.|+++.+ ...++..     ..++|+.|++. +.+.
T Consensus       183 l~----~~~~~~l~~L~~L~l~~n~l-~-------~l~~~~~L~~L~ls~n~l~~~~~~-----~~~~L~~L~L~~n~l~  245 (597)
T 3oja_B          183 LT----HVDLSLIPSLFHANVSYNLL-S-------TLAIPIAVEELDASHNSINVVRGP-----VNVELTILKLQHNNLT  245 (597)
T ss_dssp             CS----BCCGGGCTTCSEEECCSSCC-S-------EEECCTTCSEEECCSSCCCEEECS-----CCSCCCEEECCSSCCC
T ss_pred             CC----CcChhhhhhhhhhhcccCcc-c-------cccCCchhheeeccCCcccccccc-----cCCCCCEEECCCCCCC
Confidence            63    34666788999999988643 2       2234568899998843 4433322     23689999999 7777


Q ss_pred             eeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceeccc
Q 039042          365 YILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLA  444 (526)
Q Consensus       365 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~  444 (526)
                      ..  ..+..+++|+.|++++|......|..+..+++|+.|+++++ .+..++  .....+++|+.|++++|. +..++..
T Consensus       246 ~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~--~~~~~l~~L~~L~Ls~N~-l~~i~~~  319 (597)
T 3oja_B          246 DT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALN--LYGQPIPTLKVLDLSHNH-LLHVERN  319 (597)
T ss_dssp             CC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEE--CSSSCCTTCCEEECCSSC-CCCCGGG
T ss_pred             CC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCC--cccccCCCCcEEECCCCC-CCccCcc
Confidence            64  56778899999999998655555666788899999999987 677765  344678999999999864 5566654


Q ss_pred             ccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCC
Q 039042          445 DDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCT  498 (526)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~  498 (526)
                                  +..+++|++|+++++ .+..++.    ..+++|+.|++++++
T Consensus       320 ------------~~~l~~L~~L~L~~N-~l~~~~~----~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          320 ------------QPQFDRLENLYLDHN-SIVTLKL----STHHTLKNLTLSHND  356 (597)
T ss_dssp             ------------HHHHTTCSEEECCSS-CCCCCCC----CTTCCCSEEECCSSC
T ss_pred             ------------cccCCCCCEEECCCC-CCCCcCh----hhcCCCCEEEeeCCC
Confidence                        236899999999985 4666654    358999999998864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.86  E-value=1.1e-20  Score=202.31  Aligned_cols=413  Identities=14%  Similarity=0.093  Sum_probs=257.3

Q ss_pred             HhccccccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhccccccc
Q 039042           45 LQLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANIS  122 (526)
Q Consensus        45 ~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~  122 (526)
                      ..|.++.+|+.++++.+.+..++.. ...++++|++|+|++|.....|...+.++++|++  +.++. +..++..     
T Consensus        70 ~~f~~l~~L~~L~Ls~N~i~~i~~~-~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~-----  142 (635)
T 4g8a_A           70 YSFFSFPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENF-----  142 (635)
T ss_dssp             TTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSC-CCCSTTC-----
T ss_pred             HHHhCCCCCCEEECCCCcCCCcChh-HhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCc-CCCCChh-----
Confidence            4578889999999999988887653 3467899999999999866668888999999999  66653 4444331     


Q ss_pred             chhhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCccccccccc-------------------
Q 039042          123 NTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSF-------------------  183 (526)
Q Consensus       123 ~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l-------------------  183 (526)
                      .++.+++|++|++++|.++.+..  |.. +..+++|++|++++|. ++.+.|..+..+..+                   
T Consensus       143 ~~~~L~~L~~L~Ls~N~l~~~~~--~~~-~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~  218 (635)
T 4g8a_A          143 PIGHLKTLKELNVAHNLIQSFKL--PEY-FSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP  218 (635)
T ss_dssp             CCTTCTTCCEEECCSSCCCCCCC--CGG-GGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECT
T ss_pred             hhhcCcccCeeccccCccccCCC--chh-hccchhhhhhcccCcc-ccccccccccchhhhhhhhhhhhcccCcccccCc
Confidence            12348999999999997765422  222 5589999999999874 444444433211111                   


Q ss_pred             -----ccccEEeeeccccc--------------cE--EEeecchh--------------------------------hhc
Q 039042          184 -----VRLQYIRIEKCHVL--------------EE--LIVVDNQE--------------------------------EER  210 (526)
Q Consensus       184 -----~~L~~L~l~~~~~l--------------~~--l~~~~~~~--------------------------------~~~  210 (526)
                           ..++.+++.++...              +.  +.......                                ...
T Consensus       219 ~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~  298 (635)
T 4g8a_A          219 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGI  298 (635)
T ss_dssp             TTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEEC
T ss_pred             ccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccch
Confidence                 11122222221000              00  00000000                                000


Q ss_pred             ccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCC--------------ccccccCC
Q 039042          211 KNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTND--------------LTKKVFPN  276 (526)
Q Consensus       211 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~--------------~~~~~l~~  276 (526)
                      ......+.+++.+.+.++. +..+..    .....+|+.|.+.+| .+..++......              .....+++
T Consensus       299 ~~~~~~~~~l~~l~~~~~~-~~~~~~----~~~~~~L~~L~l~~~-~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~  372 (635)
T 4g8a_A          299 IDLFNCLTNVSSFSLVSVT-IERVKD----FSYNFGWQHLELVNC-KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS  372 (635)
T ss_dssp             TTTTGGGTTCSEEEEESCE-EEECGG----GGSCCCCSEEEEESC-EESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTT
T ss_pred             hhhhhhhcccccccccccc-cccccc----cccchhhhhhhcccc-cccCcCcccchhhhhcccccccCCCCcccccccc
Confidence            0001223344555544422 111111    223445555555544 122111110000              00135788


Q ss_pred             cceEEEeeccccccceeccc--cccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-ec-cccccCCCcCccccc
Q 039042          277 LEELIVDAEYIITNKFIFSE--DLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GY-SDWLPKEKVENGMEV  352 (526)
Q Consensus       277 L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~-~~~~~~~~~~~~~~~  352 (526)
                      |+.++++.+.+.. ....+.  ....+|+.+++..+....   .+ ..+..+++|+.+.+. +. ....+...+  ..++
T Consensus       373 L~~L~ls~n~l~~-~~~~~~~~~~~~~L~~L~~~~~~~~~---~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~--~~l~  445 (635)
T 4g8a_A          373 LEFLDLSRNGLSF-KGCCSQSDFGTISLKYLDLSFNGVIT---MS-SNFLGLEQLEHLDFQHSNLKQMSEFSVF--LSLR  445 (635)
T ss_dssp             CCEEECCSSCCBE-EEECCHHHHSCSCCCEEECCSCSEEE---EC-SCCTTCTTCCEEECTTSEEESTTSSCTT--TTCT
T ss_pred             cccchhhcccccc-ccccccchhhhhhhhhhhcccccccc---cc-ccccccccccchhhhhcccccccccccc--cccc
Confidence            9999988665521 111222  246689999998876544   22 245678999999988 33 333333322  5678


Q ss_pred             cceEEEec-cCceeeccccccccCcccEEEEeccCCccc-ccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEE
Q 039042          353 IIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLIN-LVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREM  430 (526)
Q Consensus       353 ~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~-l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L  430 (526)
                      +++.+++. +.+....+..+..+++|+.|+++++..... .|..+..+++|++|++++| +++.+++ ..+..+++|++|
T Consensus       446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~-~~f~~l~~L~~L  523 (635)
T 4g8a_A          446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSP-TAFNSLSSLQVL  523 (635)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEE
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcCh-HHHcCCCCCCEE
Confidence            99999999 889988888888999999999999876654 4456778899999999998 6777753 366789999999


Q ss_pred             EEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccC-CCccEEeEecC
Q 039042          431 KIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNF-PSLERLLVDDC  497 (526)
Q Consensus       431 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~-~~L~~L~l~~C  497 (526)
                      +++++ .+..++..           .+..+++|+.|++++ +.++.++... +..+ ++|+.|+++++
T Consensus       524 ~Ls~N-~l~~l~~~-----------~~~~l~~L~~L~Ls~-N~l~~~~~~~-l~~l~~~L~~L~L~~N  577 (635)
T 4g8a_A          524 NMSHN-NFFSLDTF-----------PYKCLNSLQVLDYSL-NHIMTSKKQE-LQHFPSSLAFLNLTQN  577 (635)
T ss_dssp             ECTTS-CCCBCCCG-----------GGTTCTTCCEEECTT-SCCCBCCSSC-TTCCCTTCCEEECTTC
T ss_pred             ECCCC-cCCCCChh-----------HHhCCCCCCEEECCC-CcCCCCCHHH-HHhhhCcCCEEEeeCC
Confidence            99985 46666443           133578999999998 4677776654 4555 68999999874

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.86  E-value=6e-21  Score=195.39  Aligned_cols=262  Identities=15%  Similarity=0.041  Sum_probs=135.9

Q ss_pred             cccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhcccccccchhhhhhhhhhcccccccccccccccc
Q 039042           72 RVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVA  149 (526)
Q Consensus        72 ~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~  149 (526)
                      .+.+++|++|++++|.....|.  ++.+++|++  +.++. +..++        ++.+++|++|++++|.++.+    + 
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~Ls~n~-l~~~~--------~~~l~~L~~L~Ls~N~l~~~----~-  101 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNN-ITTLD--------LSQNTNLTYLACDSNKLTNL----D-  101 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCCTT--GGGCTTCSEEECCSSC-CSCCC--------CTTCTTCSEEECCSSCCSCC----C-
T ss_pred             hhHcCCCCEEEccCCCcccChh--hcccCCCCEEEccCCc-CCeEc--------cccCCCCCEEECcCCCCcee----e-
Confidence            3457777777777776554452  455555555  33332 22221        11256666666666665544    2 


Q ss_pred             cccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCc
Q 039042          150 AMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLE  229 (526)
Q Consensus       150 ~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  229 (526)
                        +..+++|++|++++|. ++.+ |     ++.+++|++|++++| .+..++  .          +.+++|++|+++++.
T Consensus       102 --~~~l~~L~~L~L~~N~-l~~l-~-----~~~l~~L~~L~l~~N-~l~~l~--l----------~~l~~L~~L~l~~n~  159 (457)
T 3bz5_A          102 --VTPLTKLTYLNCDTNK-LTKL-D-----VSQNPLLTYLNCARN-TLTEID--V----------SHNTQLTELDCHLNK  159 (457)
T ss_dssp             --CTTCTTCCEEECCSSC-CSCC-C-----CTTCTTCCEEECTTS-CCSCCC--C----------TTCTTCCEEECTTCS
T ss_pred             --cCCCCcCCEEECCCCc-CCee-c-----CCCCCcCCEEECCCC-ccceec--c----------ccCCcCCEEECCCCC
Confidence              3356666666666653 3332 2     225666666666666 343332  1          456666666666655


Q ss_pred             cccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeee
Q 039042          230 KLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEF  309 (526)
Q Consensus       230 ~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  309 (526)
                      .+..++     +..+++|++|++++| +++.++  +      ..+++|+.|++++|.+..    ++...+++|++|++++
T Consensus       160 ~~~~~~-----~~~l~~L~~L~ls~n-~l~~l~--l------~~l~~L~~L~l~~N~l~~----~~l~~l~~L~~L~Ls~  221 (457)
T 3bz5_A          160 KITKLD-----VTPQTQLTTLDCSFN-KITELD--V------SQNKLLNRLNCDTNNITK----LDLNQNIQLTFLDCSS  221 (457)
T ss_dssp             CCCCCC-----CTTCTTCCEEECCSS-CCCCCC--C------TTCTTCCEEECCSSCCSC----CCCTTCTTCSEEECCS
T ss_pred             cccccc-----cccCCcCCEEECCCC-ccceec--c------ccCCCCCEEECcCCcCCe----eccccCCCCCEEECcC
Confidence            444442     335666666666666 455543  1      245666666666555422    2344556666666666


Q ss_pred             CCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEeccCceeeccccccccCcccEEEEeccCCc
Q 039042          310 VDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRCYDLKYILKQESSIMNNLVILHVTNCHRL  388 (526)
Q Consensus       310 ~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~~~l~~~~~~~~~~l~~L~~L~l~~c~~l  388 (526)
                      |.. +  .+|   +..+++|+.|+++ +....++.     ..+++|+.|++.             ..+|+.|++++|...
T Consensus       222 N~l-~--~ip---~~~l~~L~~L~l~~N~l~~~~~-----~~l~~L~~L~l~-------------~n~L~~L~l~~n~~~  277 (457)
T 3bz5_A          222 NKL-T--EID---VTPLTQLTYFDCSVNPLTELDV-----STLSKLTTLHCI-------------QTDLLEIDLTHNTQL  277 (457)
T ss_dssp             SCC-S--CCC---CTTCTTCSEEECCSSCCSCCCC-----TTCTTCCEEECT-------------TCCCSCCCCTTCTTC
T ss_pred             Ccc-c--ccC---ccccCCCCEEEeeCCcCCCcCH-----HHCCCCCEEecc-------------CCCCCEEECCCCccC
Confidence            543 2  233   4456666666666 22222221     233455555543             013444444444444


Q ss_pred             ccccCCCccCCCcCEEEEccCCCcccc
Q 039042          389 INLVPSSTSFQNLTSLEISYCNGLKNV  415 (526)
Q Consensus       389 ~~l~~~~~~~~~L~~L~l~~c~~l~~~  415 (526)
                      ..+|  ...+++|+.|++++|+.+..+
T Consensus       278 ~~~~--~~~l~~L~~L~Ls~n~~l~~l  302 (457)
T 3bz5_A          278 IYFQ--AEGCRKIKELDVTHNTQLYLL  302 (457)
T ss_dssp             CEEE--CTTCTTCCCCCCTTCTTCCEE
T ss_pred             Cccc--ccccccCCEEECCCCccccee
Confidence            4443  234455555666555444433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.85  E-value=7.2e-21  Score=194.81  Aligned_cols=290  Identities=18%  Similarity=0.093  Sum_probs=164.3

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      +++|++|++++|.++.+    +   ++.+++|++|++++|. ++.+ |     ++.+++|++|++++| .+..++  +  
T Consensus        63 l~~L~~L~Ls~n~l~~~----~---~~~l~~L~~L~Ls~N~-l~~~-~-----~~~l~~L~~L~L~~N-~l~~l~--~--  123 (457)
T 3bz5_A           63 LTGLTKLICTSNNITTL----D---LSQNTNLTYLACDSNK-LTNL-D-----VTPLTKLTYLNCDTN-KLTKLD--V--  123 (457)
T ss_dssp             CTTCSEEECCSSCCSCC----C---CTTCTTCSEEECCSSC-CSCC-C-----CTTCTTCCEEECCSS-CCSCCC--C--
T ss_pred             cCCCCEEEccCCcCCeE----c---cccCCCCCEEECcCCC-Ccee-e-----cCCCCcCCEEECCCC-cCCeec--C--
Confidence            56666666666665544    2   2356666666666653 3332 2     225666666666666 344332  1  


Q ss_pred             hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY  286 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  286 (526)
                              +.+++|++|+++++ .++.++     ++.+++|++|++++|..+..++  +      ..+++|+.|++++|.
T Consensus       124 --------~~l~~L~~L~l~~N-~l~~l~-----l~~l~~L~~L~l~~n~~~~~~~--~------~~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          124 --------SQNPLLTYLNCARN-TLTEID-----VSHNTQLTELDCHLNKKITKLD--V------TPQTQLTTLDCSFNK  181 (457)
T ss_dssp             --------TTCTTCCEEECTTS-CCSCCC-----CTTCTTCCEEECTTCSCCCCCC--C------TTCTTCCEEECCSSC
T ss_pred             --------CCCCcCCEEECCCC-ccceec-----cccCCcCCEEECCCCCcccccc--c------ccCCcCCEEECCCCc
Confidence                    45666666666653 344442     3356666666666664444332  1      245666666666554


Q ss_pred             ccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cCce
Q 039042          287 IITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLK  364 (526)
Q Consensus       287 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~  364 (526)
                      +.    .++...+++|+.|++++|..-.   +   .+..+++|+.|+++ +....+|     ...+++|++|+++ +.+.
T Consensus       182 l~----~l~l~~l~~L~~L~l~~N~l~~---~---~l~~l~~L~~L~Ls~N~l~~ip-----~~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          182 IT----ELDVSQNKLLNRLNCDTNNITK---L---DLNQNIQLTFLDCSSNKLTEID-----VTPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             CC----CCCCTTCTTCCEEECCSSCCSC---C---CCTTCTTCSEEECCSSCCSCCC-----CTTCTTCSEEECCSSCCS
T ss_pred             cc----eeccccCCCCCEEECcCCcCCe---e---ccccCCCCCEEECcCCcccccC-----ccccCCCCEEEeeCCcCC
Confidence            42    2344455666666666554322   1   24455666666665 2222222     1344556666665 5555


Q ss_pred             eeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceeccc
Q 039042          365 YILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLA  444 (526)
Q Consensus       365 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~  444 (526)
                      .++   ...+++|+.|++++              .+|+.|++++|+.+..++    .+.+++|+.|++++|..++.++..
T Consensus       247 ~~~---~~~l~~L~~L~l~~--------------n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~~  305 (457)
T 3bz5_A          247 ELD---VSTLSKLTTLHCIQ--------------TDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDCQ  305 (457)
T ss_dssp             CCC---CTTCTTCCEEECTT--------------CCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEECT
T ss_pred             CcC---HHHCCCCCEEeccC--------------CCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceeccC
Confidence            543   22344555555433              246667777776555554    256799999999999888887753


Q ss_pred             ccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCcccc
Q 039042          445 DDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGF  503 (526)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l  503 (526)
                      .......    .+..+++|++|++++ +.++.++    +..+++|+.|+++++ +++.+
T Consensus       306 ~~~L~~L----~l~~~~~L~~L~L~~-N~l~~l~----l~~l~~L~~L~l~~N-~l~~l  354 (457)
T 3bz5_A          306 AAGITEL----DLSQNPKLVYLYLNN-TELTELD----VSHNTKLKSLSCVNA-HIQDF  354 (457)
T ss_dssp             TCCCSCC----CCTTCTTCCEEECTT-CCCSCCC----CTTCTTCSEEECCSS-CCCBC
T ss_pred             CCcceEe----chhhcccCCEEECCC-Ccccccc----cccCCcCcEEECCCC-CCCCc
Confidence            2221111    133567888898887 4566664    456899999999874 45443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.84  E-value=7.5e-22  Score=209.84  Aligned_cols=377  Identities=13%  Similarity=0.015  Sum_probs=206.6

Q ss_pred             cCCcccEEEEecCCCCCCchhhhhh-ccC-ccc--ccccccchhhhcccccccchhhhhhhhhhcccccccccc---ccc
Q 039042           74 GSSQLKFLGIHGCRDALNPSAESKR-QRQ-EES--ANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERI---WRN  146 (526)
Q Consensus        74 ~l~~L~~L~L~~c~~~~~p~~~l~~-l~~-L~~--i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~---~~~  146 (526)
                      .+++|++|++++|.........+.. +++ |++  +.+|..+......    .....+++|++|+|++|.+++.   |..
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~----~~~~~~~~L~~L~L~~~~~~~~~~~~l~  185 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLL----SIVTHCRKIKTLLMEESSFSEKDGKWLH  185 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHH----HHHHHCTTCSEEECTTCEEECCCSHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHH----HHHhhCCCCCEEECccccccCcchhHHH
Confidence            5889999999998533332223444 444 888  7777643221110    0112378899999999965432   111


Q ss_pred             ccccccccCCcccEEEeccCCCc----eecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccce
Q 039042          147 QVAAMTCGIQNLTHLTLYNCMNL----RCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQY  222 (526)
Q Consensus       147 ~~~~~~~~l~~L~~L~L~~c~~l----~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~  222 (526)
                      ..   ...+++|++|+++++..-    ..+ +..+.   .+++|++|++++| .+..++...          ..+++|++
T Consensus       186 ~~---~~~~~~L~~L~L~~n~~~~~~~~~l-~~~~~---~~~~L~~L~L~~~-~~~~l~~~~----------~~~~~L~~  247 (592)
T 3ogk_B          186 EL---AQHNTSLEVLNFYMTEFAKISPKDL-ETIAR---NCRSLVSVKVGDF-EILELVGFF----------KAAANLEE  247 (592)
T ss_dssp             HH---HHHCCCCCEEECTTCCCSSCCHHHH-HHHHH---HCTTCCEEECSSC-BGGGGHHHH----------HHCTTCCE
T ss_pred             HH---HhcCCCccEEEeeccCCCccCHHHH-HHHHh---hCCCCcEEeccCc-cHHHHHHHH----------hhhhHHHh
Confidence            11   336889999999876532    111 22222   6788999999887 343333221          46778888


Q ss_pred             eecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceecc--ccccc
Q 039042          223 LKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFS--EDLLC  300 (526)
Q Consensus       223 L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~  300 (526)
                      |+++.+............+..+++|+.|.++++ ....++..+      ..+++|++|++++|.+..  ..+.  ...++
T Consensus       248 L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~------~~~~~L~~L~Ls~~~l~~--~~~~~~~~~~~  318 (592)
T 3ogk_B          248 FCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILF------PFAAQIRKLDLLYALLET--EDHCTLIQKCP  318 (592)
T ss_dssp             EEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGG------GGGGGCCEEEETTCCCCH--HHHHHHHTTCT
T ss_pred             hcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHH------hhcCCCcEEecCCCcCCH--HHHHHHHHhCc
Confidence            888653222111111112556777777777664 222233222      356778888887665422  1111  24567


Q ss_pred             cccEEEeeeCCcccccccchhHhhcCCCccEEEEe-----------ec-cccccCCCcCccccccceEEEec-cCceeec
Q 039042          301 KLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-----------GY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYIL  367 (526)
Q Consensus       301 ~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-----------~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~  367 (526)
                      +|++|+++++  +. +.........+++|++|++.           |+ ........+ ...+++|++|.+. +.+....
T Consensus       319 ~L~~L~L~~~--~~-~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l-~~~~~~L~~L~l~~~~l~~~~  394 (592)
T 3ogk_B          319 NLEVLETRNV--IG-DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL-AQGCQELEYMAVYVSDITNES  394 (592)
T ss_dssp             TCCEEEEEGG--GH-HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH-HHHCTTCSEEEEEESCCCHHH
T ss_pred             CCCEEeccCc--cC-HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH-HhhCccCeEEEeecCCccHHH
Confidence            7888877732  22 11122234567778888777           22 110000000 1346778888776 5555443


Q ss_pred             cccccc-cCcccEEEEec---cCCcccccC------CCccCCCcCEEEEccCCC-cccccchHHHhhcccccEEEEcccc
Q 039042          368 KQESSI-MNNLVILHVTN---CHRLINLVP------SSTSFQNLTSLEISYCNG-LKNVLTFSIAKTLVRLREMKIESCA  436 (526)
Q Consensus       368 ~~~~~~-l~~L~~L~l~~---c~~l~~l~~------~~~~~~~L~~L~l~~c~~-l~~~~~~~~~~~l~~L~~L~i~~c~  436 (526)
                      ...+.. +++|+.|++++   |..+...|.      ....+++|++|+++.|.+ +.+.........+++|+.|++++|.
T Consensus       395 ~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~  474 (592)
T 3ogk_B          395 LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG  474 (592)
T ss_dssp             HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred             HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence            333333 67788888874   334443221      134577788888876653 3433323344457788888887764


Q ss_pred             cccee-cccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCC
Q 039042          437 MITEI-VLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCT  498 (526)
Q Consensus       437 ~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~  498 (526)
                       +.+. +..           ....+++|++|++++|+ ++..........+++|++|++++|.
T Consensus       475 -l~~~~~~~-----------~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          475 -ESDEGLME-----------FSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             -SSHHHHHH-----------HHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             -CCHHHHHH-----------HHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence             3221 110           01245778888888876 4432211123457888888888876

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.84  E-value=1.1e-19  Score=185.77  Aligned_cols=373  Identities=16%  Similarity=0.088  Sum_probs=218.2

Q ss_pred             cccceecccccccccccccccccccCCcccEEEEecCCCCCC-chhhhhhccCccc--cccccc--chhhhcccccccch
Q 039042           50 IEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALN-PSAESKRQRQEES--ANDMQS--NELILEDNANISNT  124 (526)
Q Consensus        50 ~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~-p~~~l~~l~~L~~--i~~~~~--l~~~~~~~~~~~~~  124 (526)
                      ..+|+.++++.+.+..+|..  .+.+++|++|++++|..... |.. ++++++|+.  +.+|..  ++.+...++....+
T Consensus        10 ~~~L~~L~l~~n~l~~iP~~--i~~L~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l   86 (454)
T 1jl5_A           10 NTFLQEPLRHSSNLTEMPVE--AENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCLDRQAHELELNNLGLSSL   86 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTT-SCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC
T ss_pred             cccchhhhcccCchhhCChh--HhcccchhhhhccCCcccccCCcc-cccchhcchhhhhhhhccCCCEEEecCCccccC
Confidence            35677777877777777763  46788888888888876544 543 455555544  333321  11111111110000


Q ss_pred             -hhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEee
Q 039042          125 -LFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVV  203 (526)
Q Consensus       125 -~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~  203 (526)
                       ...++|++|++++|.++.+    |.    .+++|++|++++|. ++.+ |.      ..++|++|++++| .+..++ .
T Consensus        87 p~~~~~L~~L~l~~n~l~~l----p~----~~~~L~~L~l~~n~-l~~l-~~------~~~~L~~L~L~~n-~l~~lp-~  148 (454)
T 1jl5_A           87 PELPPHLESLVASCNSLTEL----PE----LPQSLKSLLVDNNN-LKAL-SD------LPPLLEYLGVSNN-QLEKLP-E  148 (454)
T ss_dssp             CSCCTTCSEEECCSSCCSSC----CC----CCTTCCEEECCSSC-CSCC-CS------CCTTCCEEECCSS-CCSSCC-C
T ss_pred             CCCcCCCCEEEccCCcCCcc----cc----ccCCCcEEECCCCc-cCcc-cC------CCCCCCEEECcCC-CCCCCc-c
Confidence             0146788888888877654    32    34778888888763 3332 32      2257888888887 555555 2


Q ss_pred             cchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEe
Q 039042          204 DNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVD  283 (526)
Q Consensus       204 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~  283 (526)
                      +          +.+++|++|+++++ .++.++..      .++|++|++++| .++.++ .+      ..+++|++|+++
T Consensus       149 ~----------~~l~~L~~L~l~~N-~l~~lp~~------~~~L~~L~L~~n-~l~~l~-~~------~~l~~L~~L~l~  203 (454)
T 1jl5_A          149 L----------QNSSFLKIIDVDNN-SLKKLPDL------PPSLEFIAAGNN-QLEELP-EL------QNLPFLTAIYAD  203 (454)
T ss_dssp             C----------TTCTTCCEEECCSS-CCSCCCCC------CTTCCEEECCSS-CCSSCC-CC------TTCTTCCEEECC
T ss_pred             c----------CCCCCCCEEECCCC-cCcccCCC------cccccEEECcCC-cCCcCc-cc------cCCCCCCEEECC
Confidence            2          67888999998875 56666543      468899999888 566665 33      468889999998


Q ss_pred             eccccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-c
Q 039042          284 AEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-Y  361 (526)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~  361 (526)
                      +|.+..    +|. ..++|++|++++|. ++  .+|.  +..+++|++|+++.+ ...++      ..+++|++|++. +
T Consensus       204 ~N~l~~----l~~-~~~~L~~L~l~~n~-l~--~lp~--~~~l~~L~~L~l~~N~l~~l~------~~~~~L~~L~l~~N  267 (454)
T 1jl5_A          204 NNSLKK----LPD-LPLSLESIVAGNNI-LE--ELPE--LQNLPFLTTIYADNNLLKTLP------DLPPSLEALNVRDN  267 (454)
T ss_dssp             SSCCSS----CCC-CCTTCCEEECCSSC-CS--SCCC--CTTCTTCCEEECCSSCCSSCC------SCCTTCCEEECCSS
T ss_pred             CCcCCc----CCC-CcCcccEEECcCCc-CC--cccc--cCCCCCCCEEECCCCcCCccc------ccccccCEEECCCC
Confidence            776632    332 23589999998875 33  4552  678889999998833 33333      234789999998 7


Q ss_pred             CceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEcccccccee
Q 039042          362 DLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEI  441 (526)
Q Consensus       362 ~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~  441 (526)
                      .+..++..    +++|+.|++++|. +..++.   .+++|+.|+++++ .+..++.     ..++|++|+++++ .+..+
T Consensus       268 ~l~~l~~~----~~~L~~L~ls~N~-l~~l~~---~~~~L~~L~l~~N-~l~~i~~-----~~~~L~~L~Ls~N-~l~~l  332 (454)
T 1jl5_A          268 YLTDLPEL----PQSLTFLDVSENI-FSGLSE---LPPNLYYLNASSN-EIRSLCD-----LPPSLEELNVSNN-KLIEL  332 (454)
T ss_dssp             CCSCCCCC----CTTCCEEECCSSC-CSEESC---CCTTCCEEECCSS-CCSEECC-----CCTTCCEEECCSS-CCSCC
T ss_pred             cccccCcc----cCcCCEEECcCCc-cCcccC---cCCcCCEEECcCC-cCCcccC-----CcCcCCEEECCCC-ccccc
Confidence            77776432    4789999998874 444432   2368899999887 5555431     1258999999885 45555


Q ss_pred             cccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCccc---cCCCCCCC--------
Q 039042          442 VLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKG---FSRGELST--------  510 (526)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~---l~~~~~~~--------  510 (526)
                      +.               .+++|++|+++++ .++.+|.     .+++|++|++++|. +..   +|.....+        
T Consensus       333 p~---------------~~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~-l~~l~~ip~~l~~L~~n~~~~~  390 (454)
T 1jl5_A          333 PA---------------LPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNP-LREFPDIPESVEDLRMNSHLAE  390 (454)
T ss_dssp             CC---------------CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CSSCCCCCTTCCEEECCC----
T ss_pred             cc---------------cCCcCCEEECCCC-ccccccc-----hhhhccEEECCCCC-CCcCCCChHHHHhhhhcccccc
Confidence            43               2589999999885 6777776     26899999999864 444   55554444        


Q ss_pred             -----cccceEEeccc
Q 039042          511 -----PVLHKVQLNRW  521 (526)
Q Consensus       511 -----~~L~~l~l~~~  521 (526)
                           ++|+.++++..
T Consensus       391 i~~~~~~L~~L~ls~N  406 (454)
T 1jl5_A          391 VPELPQNLKQLHVETN  406 (454)
T ss_dssp             ----------------
T ss_pred             cccccCcCCEEECCCC
Confidence                 77888887643

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.82  E-value=3.3e-22  Score=212.61  Aligned_cols=381  Identities=11%  Similarity=0.003  Sum_probs=187.0

Q ss_pred             cCCcccEEEEecCCCCCC-chhhhhhccCccc--ccccccchhhhcccccccchhhhhhhhhhccccccccccccccccc
Q 039042           74 GSSQLKFLGIHGCRDALN-PSAESKRQRQEES--ANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAA  150 (526)
Q Consensus        74 ~l~~L~~L~L~~c~~~~~-p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~  150 (526)
                      .+++|++|++++|..... +..+...+++|++  +.+|..+......    .....+++|++|++++|.+++.-......
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~----~~~~~~~~L~~L~L~~~~i~~~~~~~l~~  178 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLA----AIAATCRNLKELDLRESDVDDVSGHWLSH  178 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHH----HHHHHCTTCCEEECTTCEEECCCGGGGGG
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHH----HHHHhCCCCCEEeCcCCccCCcchHHHHH
Confidence            578999999999874333 4443347888888  8877655432110    01113788999999988655321111111


Q ss_pred             ccccCCcccEEEeccCC-CceecCCccccc-ccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccC
Q 039042          151 MTCGIQNLTHLTLYNCM-NLRCLFSSCTVS-NNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDL  228 (526)
Q Consensus       151 ~~~~l~~L~~L~L~~c~-~l~~l~p~~l~~-l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  228 (526)
                      ....+++|++|++++|. .+.   +..+.. ...+++|++|++++|..+..++...          ..+++|++|++..+
T Consensus       179 ~~~~~~~L~~L~l~~~~~~~~---~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~----------~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          179 FPDTYTSLVSLNISCLASEVS---FSALERLVTRCPNLKSLKLNRAVPLEKLATLL----------QRAPQLEELGTGGY  245 (594)
T ss_dssp             SCTTCCCCCEEECTTCCSCCC---HHHHHHHHHHCTTCCEEECCTTSCHHHHHHHH----------HHCTTCSEEECSBC
T ss_pred             HhhcCCcCcEEEecccCCcCC---HHHHHHHHHhCCCCcEEecCCCCcHHHHHHHH----------hcCCcceEcccccc
Confidence            02367889999998875 111   111110 1146889999998885554432221          45777888876544


Q ss_pred             cc------ccccccCcccccCCCCccEE-EeccCCCceeccccccCCccccccCCcceEEEeeccccccceecccccccc
Q 039042          229 EK------LTSFCTGDVHMLEFPSLKEL-WISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCK  301 (526)
Q Consensus       229 ~~------l~~~~~~~~~~~~l~~L~~L-~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  301 (526)
                      ..      +..++..   +.++++|+.| .+.+.. ...++...      ..+++|++|++++|.+.+.........+++
T Consensus       246 ~~~~~~~~~~~l~~~---l~~~~~L~~Ls~~~~~~-~~~l~~~~------~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~  315 (594)
T 2p1m_B          246 TAEVRPDVYSGLSVA---LSGCKELRCLSGFWDAV-PAYLPAVY------SVCSRLTTLNLSYATVQSYDLVKLLCQCPK  315 (594)
T ss_dssp             CCCCCHHHHHHHHHH---HHTCTTCCEEECCBTCC-GGGGGGGH------HHHTTCCEEECTTCCCCHHHHHHHHTTCTT
T ss_pred             cCccchhhHHHHHHH---HhcCCCcccccCCcccc-hhhHHHHH------HhhCCCCEEEccCCCCCHHHHHHHHhcCCC
Confidence            21      1122221   4455555555 222211 11111110      245666666666554322100000124566


Q ss_pred             ccEEEeeeCCcccccccchhHhhcCCCccEEEEe-e--------c-cccccCCCcCccccccceEEEec-cCceeecccc
Q 039042          302 LKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-G--------Y-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQE  370 (526)
Q Consensus       302 L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~--------~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~  370 (526)
                      |++|++++|  +. +.........+++|++|++. |        . ........+ ...+++|++|.+. +.+.......
T Consensus       316 L~~L~l~~~--~~-~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l-~~~~~~L~~L~~~~~~l~~~~~~~  391 (594)
T 2p1m_B          316 LQRLWVLDY--IE-DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV-SMGCPKLESVLYFCRQMTNAALIT  391 (594)
T ss_dssp             CCEEEEEGG--GH-HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH-HHHCTTCCEEEEEESCCCHHHHHH
T ss_pred             cCEEeCcCc--cC-HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH-HHhchhHHHHHHhcCCcCHHHHHH
Confidence            666666665  22 01111123346666666663 1        1 000000000 0234666666555 4444432222


Q ss_pred             cc-ccCcccEEEEe-----ccCCcccccC------CCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEcccccc
Q 039042          371 SS-IMNNLVILHVT-----NCHRLINLVP------SSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMI  438 (526)
Q Consensus       371 ~~-~l~~L~~L~l~-----~c~~l~~l~~------~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l  438 (526)
                      +. .+++|+.|+++     +|..+...+.      ....+++|+.|++++  .+.+.........+++|+.|++++|..-
T Consensus       392 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~  469 (594)
T 2p1m_B          392 IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDS  469 (594)
T ss_dssp             HHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSS
T ss_pred             HHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCc
Confidence            22 35677777776     4444443221      123456677777744  4444332233334667777777665421


Q ss_pred             ceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCC
Q 039042          439 TEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTN  499 (526)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~  499 (526)
                      ...+...           ...+++|++|++++|+. +..........+++|++|++++|+.
T Consensus       470 ~~~~~~l-----------~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          470 DLGMHHV-----------LSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHHHH-----------HHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHHHHH-----------HhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            1111100           02356777777776653 3222111133456777777777653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.82  E-value=3.2e-21  Score=204.98  Aligned_cols=412  Identities=12%  Similarity=0.049  Sum_probs=251.9

Q ss_pred             HHHHhccccccceeccccccccccc-ccccccccCCc-ccEEEEecCCCCCC--chhhhhhccCccc--ccccccchhhh
Q 039042           42 WLILQLQGIEDLELHELQEQDVNYF-ANELVRVGSSQ-LKFLGIHGCRDALN--PSAESKRQRQEES--ANDMQSNELIL  115 (526)
Q Consensus        42 ~~~~~l~~~~~L~~l~l~~~~~~~~-~~~~~~~~l~~-L~~L~L~~c~~~~~--p~~~l~~l~~L~~--i~~~~~l~~~~  115 (526)
                      ++......+.+|+.++++++.+... +.++. ..+++ |++|++++|.....  ......++++|++  +.+|..... .
T Consensus       103 ~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~-~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~-~  180 (592)
T 3ogk_B          103 WVTEISNNLRQLKSVHFRRMIVSDLDLDRLA-KARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEK-D  180 (592)
T ss_dssp             HHHHHHHHCTTCCEEEEESCBCCHHHHHHHH-HHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECC-C
T ss_pred             HHHHHHhhCCCCCeEEeeccEecHHHHHHHH-HhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCc-c
Confidence            4555555777888888887654332 22211 12555 99999999984332  2233458899999  777742111 0


Q ss_pred             cccccccchhhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccc
Q 039042          116 EDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCH  195 (526)
Q Consensus       116 ~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~  195 (526)
                      .. ........+++|++|++++|.++.+........+..+++|++|++.+|... .+ |..+.   .+++|++|+++...
T Consensus       181 ~~-~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l-~~~~~---~~~~L~~L~l~~~~  254 (592)
T 3ogk_B          181 GK-WLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-EL-VGFFK---AAANLEEFCGGSLN  254 (592)
T ss_dssp             SH-HHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GG-HHHHH---HCTTCCEEEECBCC
T ss_pred             hh-HHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HH-HHHHh---hhhHHHhhcccccc
Confidence            00 000112247899999999997752211111111447899999999997543 33 54444   78999999998642


Q ss_pred             cccEEEeecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccc-cccCCcccccc
Q 039042          196 VLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFK-RTTNDLTKKVF  274 (526)
Q Consensus       196 ~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~~~~l  274 (526)
                      ......       .....+..+++|+.|.++++ ....++..   +..+++|++|++++|. +..... ...     ..+
T Consensus       255 ~~~~~~-------~~~~~l~~~~~L~~L~l~~~-~~~~l~~~---~~~~~~L~~L~Ls~~~-l~~~~~~~~~-----~~~  317 (592)
T 3ogk_B          255 EDIGMP-------EKYMNLVFPRKLCRLGLSYM-GPNEMPIL---FPFAAQIRKLDLLYAL-LETEDHCTLI-----QKC  317 (592)
T ss_dssp             CCTTCT-------TSSSCCCCCTTCCEEEETTC-CTTTGGGG---GGGGGGCCEEEETTCC-CCHHHHHHHH-----TTC
T ss_pred             cccchH-------HHHHHhhccccccccCcccc-chhHHHHH---HhhcCCCcEEecCCCc-CCHHHHHHHH-----HhC
Confidence            221100       00111367889999999874 33444444   6678999999999996 433221 111     468


Q ss_pred             CCcceEEEeeccccc-cceeccccccccccEEEeee----------CCcccccccchhHhhcCCCccEEEEeec-ccccc
Q 039042          275 PNLEELIVDAEYIIT-NKFIFSEDLLCKLKCLDVEF----------VDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLP  342 (526)
Q Consensus       275 ~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~----------~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~  342 (526)
                      ++|++|+++ +.+.+ .+.. ....+++|++|++++          |..+++ .........+++|++|.+.|+ .....
T Consensus       318 ~~L~~L~L~-~~~~~~~l~~-~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~l~~~~  394 (592)
T 3ogk_B          318 PNLEVLETR-NVIGDRGLEV-LAQYCKQLKRLRIERGADEQGMEDEEGLVSQ-RGLIALAQGCQELEYMAVYVSDITNES  394 (592)
T ss_dssp             TTCCEEEEE-GGGHHHHHHH-HHHHCTTCCEEEEECCCCSSTTSSTTCCCCH-HHHHHHHHHCTTCSEEEEEESCCCHHH
T ss_pred             cCCCEEecc-CccCHHHHHH-HHHhCCCCCEEEeecCccccccccccCccCH-HHHHHHHhhCccCeEEEeecCCccHHH
Confidence            999999998 32322 1111 113578999999995          776661 112223557999999999855 21111


Q ss_pred             CCCcCccccccceEEEec-----cCceeec-----cccccccCcccEEEEeccCC-ccc-ccCCC-ccCCCcCEEEEccC
Q 039042          343 KEKVENGMEVIIRRVFRC-----YDLKYIL-----KQESSIMNNLVILHVTNCHR-LIN-LVPSS-TSFQNLTSLEISYC  409 (526)
Q Consensus       343 ~~~~~~~~~~~L~~L~l~-----~~l~~~~-----~~~~~~l~~L~~L~l~~c~~-l~~-l~~~~-~~~~~L~~L~l~~c  409 (526)
                      ...+ ...+++|++|++.     +.+...+     ...+..+++|+.|+++.|.. +.. ....+ ..+++|+.|++++|
T Consensus       395 ~~~l-~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n  473 (592)
T 3ogk_B          395 LESI-GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV  473 (592)
T ss_dssp             HHHH-HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC
T ss_pred             HHHH-HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC
Confidence            0000 0336889999994     4454431     12245589999999988764 221 11111 34789999999988


Q ss_pred             CCcccccchHHHhhcccccEEEEcccccccee-cccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCC
Q 039042          410 NGLKNVLTFSIAKTLVRLREMKIESCAMITEI-VLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPS  488 (526)
Q Consensus       410 ~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~  488 (526)
                       ++++......+..+++|++|++++|. +... +..           ....+++|++|++++|+ ++..........+|.
T Consensus       474 -~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~-----------~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~  539 (592)
T 3ogk_B          474 -GESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAA-----------AVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPY  539 (592)
T ss_dssp             -CSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHH-----------HHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTT
T ss_pred             -CCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHH-----------HHHhcCccCeeECcCCc-CCHHHHHHHHHhCCC
Confidence             46654434567789999999999987 4321 111           12257999999999987 665544433446788


Q ss_pred             ccEEeEec
Q 039042          489 LERLLVDD  496 (526)
Q Consensus       489 L~~L~l~~  496 (526)
                      ++...+..
T Consensus       540 l~~~~~~~  547 (592)
T 3ogk_B          540 WNIELIPS  547 (592)
T ss_dssp             EEEEEECC
T ss_pred             cEEEEecC
Confidence            77776654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.81  E-value=2.3e-19  Score=176.35  Aligned_cols=297  Identities=13%  Similarity=0.033  Sum_probs=162.3

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      ..+++.+++++++++.+    |.+   -.++|++|++++|. ++.+.|..+.   .+++|++|++++| .+..++...  
T Consensus        32 ~c~l~~l~~~~~~l~~i----p~~---~~~~l~~L~l~~n~-i~~~~~~~~~---~l~~L~~L~L~~n-~l~~~~~~~--   97 (332)
T 2ft3_A           32 HCHLRVVQCSDLGLKAV----PKE---ISPDTTLLDLQNND-ISELRKDDFK---GLQHLYALVLVNN-KISKIHEKA--   97 (332)
T ss_dssp             EEETTEEECCSSCCSSC----CSC---CCTTCCEEECCSSC-CCEECTTTTT---TCTTCCEEECCSS-CCCEECGGG--
T ss_pred             cccCCEEECCCCCcccc----CCC---CCCCCeEEECCCCc-CCccCHhHhh---CCCCCcEEECCCC-ccCccCHhH--
Confidence            34677777777777655    433   34678888888764 4555454444   6778888888777 455542221  


Q ss_pred             hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY  286 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  286 (526)
                             +..+++|++|+++++ .+..++..   +  +++|++|+++++ .+..++...+     ..+++|++|++++|.
T Consensus        98 -------~~~l~~L~~L~L~~n-~l~~l~~~---~--~~~L~~L~l~~n-~i~~~~~~~~-----~~l~~L~~L~l~~n~  158 (332)
T 2ft3_A           98 -------FSPLRKLQKLYISKN-HLVEIPPN---L--PSSLVELRIHDN-RIRKVPKGVF-----SGLRNMNCIEMGGNP  158 (332)
T ss_dssp             -------STTCTTCCEEECCSS-CCCSCCSS---C--CTTCCEEECCSS-CCCCCCSGGG-----SSCSSCCEEECCSCC
T ss_pred             -------hhCcCCCCEEECCCC-cCCccCcc---c--cccCCEEECCCC-ccCccCHhHh-----CCCccCCEEECCCCc
Confidence                   156777888887764 45666555   2  267777777776 4555554322     256667777766554


Q ss_pred             ccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cCce
Q 039042          287 IITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLK  364 (526)
Q Consensus       287 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~  364 (526)
                      +.. ..                         .....+..+ +|+.|+++ +....+|..     ..++|++|++. +.+.
T Consensus       159 l~~-~~-------------------------~~~~~~~~l-~L~~L~l~~n~l~~l~~~-----~~~~L~~L~l~~n~i~  206 (332)
T 2ft3_A          159 LEN-SG-------------------------FEPGAFDGL-KLNYLRISEAKLTGIPKD-----LPETLNELHLDHNKIQ  206 (332)
T ss_dssp             CBG-GG-------------------------SCTTSSCSC-CCSCCBCCSSBCSSCCSS-----SCSSCSCCBCCSSCCC
T ss_pred             ccc-CC-------------------------CCcccccCC-ccCEEECcCCCCCccCcc-----ccCCCCEEECCCCcCC
Confidence            421 00                         111112222 44444444 112222211     12456666666 6666


Q ss_pred             eeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceeccc
Q 039042          365 YILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLA  444 (526)
Q Consensus       365 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~  444 (526)
                      .+.+..+..+++|+.|+++++..-...+..+..+++|+.|+++++ +++.+|  ..+..+++|+.|+++++ .+..++..
T Consensus       207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp--~~l~~l~~L~~L~l~~N-~l~~~~~~  282 (332)
T 2ft3_A          207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVP--AGLPDLKLLQVVYLHTN-NITKVGVN  282 (332)
T ss_dssp             CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCC--TTGGGCTTCCEEECCSS-CCCBCCTT
T ss_pred             ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecC--hhhhcCccCCEEECCCC-CCCccChh
Confidence            666566667777777777776432222224556677777777776 566555  33566777777777774 35544432


Q ss_pred             ccCCcccccCCCeeeeCccCeEecCCCcccc-ccCCCCccccCCCccEEeEecCC
Q 039042          445 DDDDDHDAAKDEVIAFSELNELKLLNLKSLR-SFYSGNRALNFPSLERLLVDDCT  498 (526)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~~~L~~L~l~~C~  498 (526)
                      .....     .....+++|+.|++.+++... .++.. .+..+++|+.++++++.
T Consensus       283 ~~~~~-----~~~~~~~~l~~L~l~~N~~~~~~~~~~-~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          283 DFCPV-----GFGVKRAYYNGISLFNNPVPYWEVQPA-TFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SSSCS-----SCCSSSCCBSEEECCSSSSCGGGSCGG-GGTTBCCSTTEEC----
T ss_pred             Hcccc-----ccccccccccceEeecCcccccccCcc-cccccchhhhhhccccc
Confidence            21100     000124567777777755321 22222 24556777777776653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.79  E-value=4.8e-18  Score=166.73  Aligned_cols=184  Identities=10%  Similarity=-0.030  Sum_probs=98.5

Q ss_pred             ccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cCceeeccccccccC
Q 039042          298 LLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMN  375 (526)
Q Consensus       298 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~  375 (526)
                      .+++|++|+++++..-. .......+..+++|++|++. +....++..     ..++|++|++. +.+..+.+..+..++
T Consensus       143 ~l~~L~~L~l~~n~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-----~~~~L~~L~l~~n~l~~~~~~~~~~l~  216 (330)
T 1xku_A          143 GLNQMIVVELGTNPLKS-SGIENGAFQGMKKLSYIRIADTNITTIPQG-----LPPSLTELHLDGNKITKVDAASLKGLN  216 (330)
T ss_dssp             TCTTCCEEECCSSCCCG-GGBCTTGGGGCTTCCEEECCSSCCCSCCSS-----CCTTCSEEECTTSCCCEECTGGGTTCT
T ss_pred             CCccccEEECCCCcCCc-cCcChhhccCCCCcCEEECCCCccccCCcc-----ccccCCEEECCCCcCCccCHHHhcCCC
Confidence            34455555555543321 01222355667777777776 323333322     22677777777 777777667777777


Q ss_pred             cccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCC
Q 039042          376 NLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKD  455 (526)
Q Consensus       376 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~  455 (526)
                      +|+.|+++++..-...+..+..+++|++|+++++ .+..++  ..+..+++|++|+++++. +..++.......     .
T Consensus       217 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp--~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~-----~  287 (330)
T 1xku_A          217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVP--GGLADHKYIQVVYLHNNN-ISAIGSNDFCPP-----G  287 (330)
T ss_dssp             TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCC--TTTTTCSSCCEEECCSSC-CCCCCTTSSSCS-----S
T ss_pred             CCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCC--hhhccCCCcCEEECCCCc-CCccChhhcCCc-----c
Confidence            8888888776433322234566777777777776 556555  345566777777777743 554443321100     0


Q ss_pred             CeeeeCccCeEecCCCcccc-ccCCCCccccCCCccEEeEecC
Q 039042          456 EVIAFSELNELKLLNLKSLR-SFYSGNRALNFPSLERLLVDDC  497 (526)
Q Consensus       456 ~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~~~L~~L~l~~C  497 (526)
                      .....++|+.|++.+++... .++.. .+..+++++.++++++
T Consensus       288 ~~~~~~~l~~l~l~~N~~~~~~i~~~-~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          288 YNTKKASYSGVSLFSNPVQYWEIQPS-TFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             CCTTSCCCSEEECCSSSSCGGGSCGG-GGTTCCCGGGEEC---
T ss_pred             cccccccccceEeecCcccccccCcc-ccccccceeEEEeccc
Confidence            00123566677776654211 12222 2445566666666553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.79  E-value=1.7e-18  Score=169.88  Aligned_cols=272  Identities=14%  Similarity=0.095  Sum_probs=163.1

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      .+.|++|++++|.++.+...   . +..+++|++|++++|. ++.+.|..+.   .+++|++|++++| .+..++..   
T Consensus        51 ~~~l~~L~L~~n~i~~~~~~---~-~~~l~~L~~L~L~~n~-l~~~~~~~~~---~l~~L~~L~Ls~n-~l~~l~~~---  118 (330)
T 1xku_A           51 PPDTALLDLQNNKITEIKDG---D-FKNLKNLHTLILINNK-ISKISPGAFA---PLVKLERLYLSKN-QLKELPEK---  118 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCTT---T-TTTCTTCCEEECCSSC-CCCBCTTTTT---TCTTCCEEECCSS-CCSBCCSS---
T ss_pred             CCCCeEEECCCCcCCEeChh---h-hccCCCCCEEECCCCc-CCeeCHHHhc---CCCCCCEEECCCC-cCCccChh---
Confidence            46788888888877765221   1 5578889999998864 4555566655   7888999999887 56655542   


Q ss_pred             hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCcee--ccccccCCccccccCCcceEEEee
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMV--RFKRTTNDLTKKVFPNLEELIVDA  284 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--~~~~~~~~~~~~~l~~L~~L~l~~  284 (526)
                               .+++|++|+++++ .+..++...  +..+++|++|+++++. +..  .....+     ..+++|+.|++++
T Consensus       119 ---------~~~~L~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~~~~~~-----~~l~~L~~L~l~~  180 (330)
T 1xku_A          119 ---------MPKTLQELRVHEN-EITKVRKSV--FNGLNQMIVVELGTNP-LKSSGIENGAF-----QGMKKLSYIRIAD  180 (330)
T ss_dssp             ---------CCTTCCEEECCSS-CCCBBCHHH--HTTCTTCCEEECCSSC-CCGGGBCTTGG-----GGCTTCCEEECCS
T ss_pred             ---------hcccccEEECCCC-cccccCHhH--hcCCccccEEECCCCc-CCccCcChhhc-----cCCCCcCEEECCC
Confidence                     3478888888874 455554332  5678888888888873 332  211111     3578888888887


Q ss_pred             ccccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeeccccccCCCcCccccccceEEEeccCce
Q 039042          285 EYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVFRCYDLK  364 (526)
Q Consensus       285 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~l~  364 (526)
                      +.+.    .+|...+++|++|++++|..-.   ++...+..+++|++|+++.                        +.+.
T Consensus       181 n~l~----~l~~~~~~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~Ls~------------------------n~l~  229 (330)
T 1xku_A          181 TNIT----TIPQGLPPSLTELHLDGNKITK---VDAASLKGLNNLAKLGLSF------------------------NSIS  229 (330)
T ss_dssp             SCCC----SCCSSCCTTCSEEECTTSCCCE---ECTGGGTTCTTCCEEECCS------------------------SCCC
T ss_pred             Cccc----cCCccccccCCEEECCCCcCCc---cCHHHhcCCCCCCEEECCC------------------------CcCc
Confidence            6553    3555555777888777765322   2233445555555555542                        4444


Q ss_pred             eeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHH-----hhcccccEEEEccccccc
Q 039042          365 YILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIA-----KTLVRLREMKIESCAMIT  439 (526)
Q Consensus       365 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~-----~~l~~L~~L~i~~c~~l~  439 (526)
                      .+.+..+..+++|+.|++++| .+..+|..+..+++|++|+++++ .++.++...+.     ...+.|+.+++.+++ +.
T Consensus       230 ~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~  306 (330)
T 1xku_A          230 AVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQ  306 (330)
T ss_dssp             EECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SC
T ss_pred             eeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc-cc
Confidence            444445556667777777766 34456666666777777777765 45555432221     124677777777754 22


Q ss_pred             eecccccCCcccccCCCeeeeCccCeEecCCC
Q 039042          440 EIVLADDDDDHDAAKDEVIAFSELNELKLLNL  471 (526)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  471 (526)
                      ......         ..+..+++++.++++++
T Consensus       307 ~~~i~~---------~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          307 YWEIQP---------STFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             GGGSCG---------GGGTTCCCGGGEEC---
T ss_pred             ccccCc---------cccccccceeEEEeccc
Confidence            110000         12335677777777664

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.79  E-value=7.8e-19  Score=172.48  Aligned_cols=266  Identities=15%  Similarity=0.123  Sum_probs=166.4

Q ss_pred             CcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccccccchhhhhhhhhhcccccccccccccccccccccC
Q 039042           76 SQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGI  155 (526)
Q Consensus        76 ~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l  155 (526)
                      .+++.++++++.....|...                               .++|++|++++|.++.+..   .. +..+
T Consensus        33 c~l~~l~~~~~~l~~ip~~~-------------------------------~~~l~~L~l~~n~i~~~~~---~~-~~~l   77 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEI-------------------------------SPDTTLLDLQNNDISELRK---DD-FKGL   77 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCC-------------------------------CTTCCEEECCSSCCCEECT---TT-TTTC
T ss_pred             ccCCEEECCCCCccccCCCC-------------------------------CCCCeEEECCCCcCCccCH---hH-hhCC
Confidence            46888888887655445432                               5688999999998776522   12 5689


Q ss_pred             CcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccc
Q 039042          156 QNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFC  235 (526)
Q Consensus       156 ~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~  235 (526)
                      ++|++|++++|. ++.+.|..+.   .+++|++|++++| .+..++..            .+++|++|+++++ .+..++
T Consensus        78 ~~L~~L~L~~n~-l~~~~~~~~~---~l~~L~~L~L~~n-~l~~l~~~------------~~~~L~~L~l~~n-~i~~~~  139 (332)
T 2ft3_A           78 QHLYALVLVNNK-ISKIHEKAFS---PLRKLQKLYISKN-HLVEIPPN------------LPSSLVELRIHDN-RIRKVP  139 (332)
T ss_dssp             TTCCEEECCSSC-CCEECGGGST---TCTTCCEEECCSS-CCCSCCSS------------CCTTCCEEECCSS-CCCCCC
T ss_pred             CCCcEEECCCCc-cCccCHhHhh---CcCCCCEEECCCC-cCCccCcc------------ccccCCEEECCCC-ccCccC
Confidence            999999999974 5555566655   7999999999998 56666543            3488999999975 566665


Q ss_pred             cCcccccCCCCccEEEeccCCCcee--ccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCcc
Q 039042          236 TGDVHMLEFPSLKELWISRCPEFMV--RFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDEL  313 (526)
Q Consensus       236 ~~~~~~~~l~~L~~L~l~~c~~l~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  313 (526)
                      ...  +..+++|++|+++++ .++.  ..+..+     ..+ +|+.|+++++.+.    .+|...+++|++|+++++...
T Consensus       140 ~~~--~~~l~~L~~L~l~~n-~l~~~~~~~~~~-----~~l-~L~~L~l~~n~l~----~l~~~~~~~L~~L~l~~n~i~  206 (332)
T 2ft3_A          140 KGV--FSGLRNMNCIEMGGN-PLENSGFEPGAF-----DGL-KLNYLRISEAKLT----GIPKDLPETLNELHLDHNKIQ  206 (332)
T ss_dssp             SGG--GSSCSSCCEEECCSC-CCBGGGSCTTSS-----CSC-CCSCCBCCSSBCS----SCCSSSCSSCSCCBCCSSCCC
T ss_pred             HhH--hCCCccCCEEECCCC-ccccCCCCcccc-----cCC-ccCEEECcCCCCC----ccCccccCCCCEEECCCCcCC
Confidence            542  678999999999988 4432  222221     233 8999999977663    356555678888888876543


Q ss_pred             cccccchhHhhcCCCccEEEEeeccccccCCCcCccccccceEEEeccCceeeccccccccCcccEEEEeccCCcccccC
Q 039042          314 TTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVFRCYDLKYILKQESSIMNNLVILHVTNCHRLINLVP  393 (526)
Q Consensus       314 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~  393 (526)
                      .   ++...+..+++|++|+++.                        +.+..+.+..+..+++|+.|++++| .+..+|.
T Consensus       207 ~---~~~~~l~~l~~L~~L~L~~------------------------N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~  258 (332)
T 2ft3_A          207 A---IELEDLLRYSKLYRLGLGH------------------------NQIRMIENGSLSFLPTLRELHLDNN-KLSRVPA  258 (332)
T ss_dssp             C---CCTTSSTTCTTCSCCBCCS------------------------SCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCT
T ss_pred             c---cCHHHhcCCCCCCEEECCC------------------------CcCCcCChhHhhCCCCCCEEECCCC-cCeecCh
Confidence            2   3333455566666666652                        3333333334444555555555554 2334444


Q ss_pred             CCccCCCcCEEEEccCCCcccccchHHHh-----hcccccEEEEcccc
Q 039042          394 SSTSFQNLTSLEISYCNGLKNVLTFSIAK-----TLVRLREMKIESCA  436 (526)
Q Consensus       394 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~-----~l~~L~~L~i~~c~  436 (526)
                      .+..+++|+.|+++++ .++.++...+..     ..++|+.|++.+++
T Consensus       259 ~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          259 GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             hhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc
Confidence            4555555555555554 344443221111     13456666666644

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.78  E-value=2.4e-18  Score=168.50  Aligned_cols=228  Identities=17%  Similarity=0.149  Sum_probs=117.6

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      ..+++.|++++|+++.+    |.+ +..+++|++|++++|.. +. .|..+.   .+++|++|++++| .+..+|..+  
T Consensus        80 ~~~l~~L~L~~n~l~~l----p~~-l~~l~~L~~L~L~~n~l-~~-lp~~~~---~l~~L~~L~Ls~n-~l~~lp~~l--  146 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQF----PDQ-AFRLSHLQHMTIDAAGL-ME-LPDTMQ---QFAGLETLTLARN-PLRALPASI--  146 (328)
T ss_dssp             STTCCEEEEESSCCSSC----CSC-GGGGTTCSEEEEESSCC-CC-CCSCGG---GGTTCSEEEEESC-CCCCCCGGG--
T ss_pred             ccceeEEEccCCCchhc----Chh-hhhCCCCCEEECCCCCc-cc-hhHHHh---ccCCCCEEECCCC-ccccCcHHH--
Confidence            35566666666666544    333 44566666666666543 23 344443   5666666666666 344444332  


Q ss_pred             hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY  286 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  286 (526)
                              ..+++|++|++++|.....+|..   +..      ..+.         ..+      ..+++|++|++++|.
T Consensus       147 --------~~l~~L~~L~L~~n~~~~~~p~~---~~~------~~~~---------~~~------~~l~~L~~L~L~~n~  194 (328)
T 4fcg_A          147 --------ASLNRLRELSIRACPELTELPEP---LAS------TDAS---------GEH------QGLVNLQSLRLEWTG  194 (328)
T ss_dssp             --------GGCTTCCEEEEEEETTCCCCCSC---SEE------EC-C---------CCE------EESTTCCEEEEEEEC
T ss_pred             --------hcCcCCCEEECCCCCCccccChh---Hhh------ccch---------hhh------ccCCCCCEEECcCCC
Confidence                    45666666666665555444433   111      0000         000      135555566555554


Q ss_pred             ccccceeccc--cccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEeccCc
Q 039042          287 IITNKFIFSE--DLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRCYDL  363 (526)
Q Consensus       287 ~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~~~l  363 (526)
                      +.    .+|.  ..+++|++|++++|....   +|. .+..+++|++|+++ |.                         +
T Consensus       195 l~----~lp~~l~~l~~L~~L~L~~N~l~~---l~~-~l~~l~~L~~L~Ls~n~-------------------------~  241 (328)
T 4fcg_A          195 IR----SLPASIANLQNLKSLKIRNSPLSA---LGP-AIHHLPKLEELDLRGCT-------------------------A  241 (328)
T ss_dssp             CC----CCCGGGGGCTTCCEEEEESSCCCC---CCG-GGGGCTTCCEEECTTCT-------------------------T
T ss_pred             cC----cchHhhcCCCCCCEEEccCCCCCc---Cch-hhccCCCCCEEECcCCc-------------------------c
Confidence            42    1222  245566666666654322   332 24445555555554 22                         1


Q ss_pred             eeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEcc
Q 039042          364 KYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIES  434 (526)
Q Consensus       364 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~  434 (526)
                      ....+..+..+++|+.|++++|.....+|..+..+++|++|++++|+.+..+|  ..+..+++|+.+++..
T Consensus       242 ~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP--~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP--SLIAQLPANCIILVPP  310 (328)
T ss_dssp             CCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC--GGGGGSCTTCEEECCG
T ss_pred             hhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc--HHHhhccCceEEeCCH
Confidence            11112334445666666666666666666566666666666666666555555  4555666666666654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.78  E-value=2.5e-20  Score=198.12  Aligned_cols=414  Identities=14%  Similarity=0.059  Sum_probs=232.1

Q ss_pred             HHHHhccccccceecccccccccccccccccccCCcccEEEEecCCCCCC--chhhhhhccCccc--ccccccchhhhcc
Q 039042           42 WLILQLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALN--PSAESKRQRQEES--ANDMQSNELILED  117 (526)
Q Consensus        42 ~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~--p~~~l~~l~~L~~--i~~~~~l~~~~~~  117 (526)
                      ++........+|+.++++++.+....-......+++|++|++++|.....  ......++++|++  +.+|. +......
T Consensus        96 ~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~  174 (594)
T 2p1m_B           96 WIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGH  174 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGG
T ss_pred             HHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchH
Confidence            44555566778888888876543322111122589999999999965544  4445668999999  77775 2221100


Q ss_pred             cccccchhhhhhhhhhcccccc--cccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccc
Q 039042          118 NANISNTLFLEKLEKLELRSIN--IERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCH  195 (526)
Q Consensus       118 ~~~~~~~~~l~~L~~L~L~~~~--l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~  195 (526)
                      . .......+++|++|++++|.  +....   ....+..+++|++|++++|..+..+ |..+.   .+++|++|++..+.
T Consensus       175 ~-l~~~~~~~~~L~~L~l~~~~~~~~~~~---l~~l~~~~~~L~~L~L~~~~~~~~l-~~~~~---~~~~L~~L~l~~~~  246 (594)
T 2p1m_B          175 W-LSHFPDTYTSLVSLNISCLASEVSFSA---LERLVTRCPNLKSLKLNRAVPLEKL-ATLLQ---RAPQLEELGTGGYT  246 (594)
T ss_dssp             G-GGGSCTTCCCCCEEECTTCCSCCCHHH---HHHHHHHCTTCCEEECCTTSCHHHH-HHHHH---HCTTCSEEECSBCC
T ss_pred             H-HHHHhhcCCcCcEEEecccCCcCCHHH---HHHHHHhCCCCcEEecCCCCcHHHH-HHHHh---cCCcceEccccccc
Confidence            0 00111137799999999985  32111   1110235799999999999777664 54444   78999999987763


Q ss_pred             cccEEEeecchhhhccccccccccccee-ecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCcccccc
Q 039042          196 VLEELIVVDNQEEERKNNIVMFPQLQYL-KMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVF  274 (526)
Q Consensus       196 ~l~~l~~~~~~~~~~~~~~~~l~~L~~L-~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l  274 (526)
                      . . +..  .........+..+++|+.| .+.+.. ...++..   ...+++|++|++++|. +.......    +...+
T Consensus       247 ~-~-~~~--~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~---~~~~~~L~~L~L~~~~-l~~~~l~~----~~~~~  313 (594)
T 2p1m_B          247 A-E-VRP--DVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAV---YSVCSRLTTLNLSYAT-VQSYDLVK----LLCQC  313 (594)
T ss_dssp             C-C-CCH--HHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGG---HHHHTTCCEEECTTCC-CCHHHHHH----HHTTC
T ss_pred             C-c-cch--hhHHHHHHHHhcCCCcccccCCcccc-hhhHHHH---HHhhCCCCEEEccCCC-CCHHHHHH----HHhcC
Confidence            2 0 000  0000111123567778777 343321 1223222   3467888888888885 44321110    01367


Q ss_pred             CCcceEEEeeccccc-cceeccccccccccEEEeee--------CCcccccccchhHhhcCCCccEEEEeec-cccccCC
Q 039042          275 PNLEELIVDAEYIIT-NKFIFSEDLLCKLKCLDVEF--------VDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKE  344 (526)
Q Consensus       275 ~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~--------~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~  344 (526)
                      ++|++|+++++ +.+ .+..+ ...+++|++|++..        |..++ .........++++|++|.+.|+ .......
T Consensus       314 ~~L~~L~l~~~-~~~~~l~~l-~~~~~~L~~L~L~~~~~~g~~~~~~l~-~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~  390 (594)
T 2p1m_B          314 PKLQRLWVLDY-IEDAGLEVL-ASTCKDLRELRVFPSEPFVMEPNVALT-EQGLVSVSMGCPKLESVLYFCRQMTNAALI  390 (594)
T ss_dssp             TTCCEEEEEGG-GHHHHHHHH-HHHCTTCCEEEEECSCTTCSSCSSCCC-HHHHHHHHHHCTTCCEEEEEESCCCHHHHH
T ss_pred             CCcCEEeCcCc-cCHHHHHHH-HHhCCCCCEEEEecCcccccccCCCCC-HHHHHHHHHhchhHHHHHHhcCCcCHHHHH
Confidence            88888888866 321 11111 12467888888843        34444 1111122345888888876654 2111101


Q ss_pred             CcCccccccceEEEec-------cCceeecc-c----cccccCcccEEEEeccCCccc-ccCCCc-cCCCcCEEEEccCC
Q 039042          345 KVENGMEVIIRRVFRC-------YDLKYILK-Q----ESSIMNNLVILHVTNCHRLIN-LVPSST-SFQNLTSLEISYCN  410 (526)
Q Consensus       345 ~~~~~~~~~L~~L~l~-------~~l~~~~~-~----~~~~l~~L~~L~l~~c~~l~~-l~~~~~-~~~~L~~L~l~~c~  410 (526)
                      .+ ...+++|+.|++.       +.+...+. .    .+..+++|+.|++++  .+.. ....+. .+++|+.|++++|.
T Consensus       391 ~l-~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~  467 (594)
T 2p1m_B          391 TI-ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG  467 (594)
T ss_dssp             HH-HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC
T ss_pred             HH-HhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC
Confidence            00 0246788888887       23332211 1    144578899999966  3321 111222 37889999998884


Q ss_pred             CcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCcc
Q 039042          411 GLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLE  490 (526)
Q Consensus       411 ~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~  490 (526)
                       +++......+..+++|++|++++|..-...+..           ....+++|++|++++|+. ..-........+|.|+
T Consensus       468 -i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~-----------~~~~l~~L~~L~l~~~~~-~~~~~~~l~~~lp~l~  534 (594)
T 2p1m_B          468 -DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLA-----------NASKLETMRSLWMSSCSV-SFGACKLLGQKMPKLN  534 (594)
T ss_dssp             -SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHH-----------TGGGGGGSSEEEEESSCC-BHHHHHHHHHHCTTEE
T ss_pred             -CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHH-----------HHHhCCCCCEEeeeCCCC-CHHHHHHHHHhCCCCE
Confidence             555433344567899999999998742111111           112468999999999865 2211111123467776


Q ss_pred             EEeEec
Q 039042          491 RLLVDD  496 (526)
Q Consensus       491 ~L~l~~  496 (526)
                      ...+..
T Consensus       535 i~~~~~  540 (594)
T 2p1m_B          535 VEVIDE  540 (594)
T ss_dssp             EEEECS
T ss_pred             EEEecC
Confidence            655554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.75  E-value=2.4e-17  Score=161.30  Aligned_cols=84  Identities=15%  Similarity=0.107  Sum_probs=57.7

Q ss_pred             ccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceec
Q 039042          182 SFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVR  261 (526)
Q Consensus       182 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  261 (526)
                      ...++++|+++++ .+..++...          ..+++|++|+++++ .+..+|..   ++.+++|++|++++| .+..+
T Consensus        79 ~~~~l~~L~L~~n-~l~~lp~~l----------~~l~~L~~L~L~~n-~l~~lp~~---~~~l~~L~~L~Ls~n-~l~~l  142 (328)
T 4fcg_A           79 TQPGRVALELRSV-PLPQFPDQA----------FRLSHLQHMTIDAA-GLMELPDT---MQQFAGLETLTLARN-PLRAL  142 (328)
T ss_dssp             TSTTCCEEEEESS-CCSSCCSCG----------GGGTTCSEEEEESS-CCCCCCSC---GGGGTTCSEEEEESC-CCCCC
T ss_pred             cccceeEEEccCC-CchhcChhh----------hhCCCCCEEECCCC-CccchhHH---HhccCCCCEEECCCC-ccccC
Confidence            3477888888887 566665543          56788888888874 45566655   677888888888877 55566


Q ss_pred             cccccCCccccccCCcceEEEeeccc
Q 039042          262 FKRTTNDLTKKVFPNLEELIVDAEYI  287 (526)
Q Consensus       262 ~~~~~~~~~~~~l~~L~~L~l~~~~~  287 (526)
                      |..+      ..+++|++|++++|.+
T Consensus       143 p~~l------~~l~~L~~L~L~~n~~  162 (328)
T 4fcg_A          143 PASI------ASLNRLRELSIRACPE  162 (328)
T ss_dssp             CGGG------GGCTTCCEEEEEEETT
T ss_pred             cHHH------hcCcCCCEEECCCCCC
Confidence            5554      4567777777776533

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.75  E-value=5.2e-18  Score=164.99  Aligned_cols=246  Identities=11%  Similarity=0.057  Sum_probs=151.6

Q ss_pred             hhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchh
Q 039042          128 EKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQE  207 (526)
Q Consensus       128 ~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~  207 (526)
                      .+++.|+++++++...+. .|.. +..+++|++|++++++.+....|..+.   .+++|++|++++|.....++..+   
T Consensus        50 ~~l~~L~L~~~~l~~~~~-~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~---~l~~L~~L~Ls~n~l~~~~p~~~---  121 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYP-IPSS-LANLPYLNFLYIGGINNLVGPIPPAIA---KLTQLHYLYITHTNVSGAIPDFL---  121 (313)
T ss_dssp             CCEEEEEEECCCCSSCEE-CCGG-GGGCTTCSEEEEEEETTEESCCCGGGG---GCTTCSEEEEEEECCEEECCGGG---
T ss_pred             ceEEEEECCCCCccCCcc-cChh-HhCCCCCCeeeCCCCCcccccCChhHh---cCCCCCEEECcCCeeCCcCCHHH---
Confidence            578899999997774110 1333 678999999999964555544576665   79999999999984333554443   


Q ss_pred             hhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCce-eccccccCCccccccC-CcceEEEeec
Q 039042          208 EERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFM-VRFKRTTNDLTKKVFP-NLEELIVDAE  285 (526)
Q Consensus       208 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~l~-~L~~L~l~~~  285 (526)
                             ..+++|++|+++++.--..++..   +..+++|++|++++| .+. .+|..+      ..++ +|+.|++++|
T Consensus       122 -------~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~L~~N-~l~~~~p~~l------~~l~~~L~~L~L~~N  184 (313)
T 1ogq_A          122 -------SQIKTLVTLDFSYNALSGTLPPS---ISSLPNLVGITFDGN-RISGAIPDSY------GSFSKLFTSMTISRN  184 (313)
T ss_dssp             -------GGCTTCCEEECCSSEEESCCCGG---GGGCTTCCEEECCSS-CCEEECCGGG------GCCCTTCCEEECCSS
T ss_pred             -------hCCCCCCEEeCCCCccCCcCChH---HhcCCCCCeEECcCC-cccCcCCHHH------hhhhhcCcEEECcCC
Confidence                   67899999999986432245554   778999999999998 455 555554      3455 8999999877


Q ss_pred             cccccceeccc--cccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec--cccccCCCcCccccccceEEEec-
Q 039042          286 YIITNKFIFSE--DLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY--SDWLPKEKVENGMEVIIRRVFRC-  360 (526)
Q Consensus       286 ~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l~-  360 (526)
                      .+..   ..|.  ..++ |++|++++|....   .+...+..+++|+.|+++.+  ....+.    ...+++|++|++. 
T Consensus       185 ~l~~---~~~~~~~~l~-L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~l~~L~~L~Ls~  253 (313)
T 1ogq_A          185 RLTG---KIPPTFANLN-LAFVDLSRNMLEG---DASVLFGSDKNTQKIHLAKNSLAFDLGK----VGLSKNLNGLDLRN  253 (313)
T ss_dssp             EEEE---ECCGGGGGCC-CSEEECCSSEEEE---CCGGGCCTTSCCSEEECCSSEECCBGGG----CCCCTTCCEEECCS
T ss_pred             eeec---cCChHHhCCc-ccEEECcCCcccC---cCCHHHhcCCCCCEEECCCCceeeecCc----ccccCCCCEEECcC
Confidence            6642   2222  1233 8888888765433   23335667777777777732  212221    1334555555555 


Q ss_pred             cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCC
Q 039042          361 YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCN  410 (526)
Q Consensus       361 ~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~  410 (526)
                      +.+....+..+..+++|+.|++++|.....+|. ...+++|+.+++.+++
T Consensus       254 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             SCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             CcccCcCChHHhcCcCCCEEECcCCcccccCCC-CccccccChHHhcCCC
Confidence            555544444555555555555555533333332 2444455555554443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.73  E-value=4.1e-18  Score=166.16  Aligned_cols=243  Identities=12%  Similarity=0.101  Sum_probs=137.5

Q ss_pred             cCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccc
Q 039042          154 GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTS  233 (526)
Q Consensus       154 ~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~  233 (526)
                      .+++|++|++++|. ++.+.|..+.   .+++|++|++++| .+..++. +          ..+++|++|+++++ .++.
T Consensus        32 ~~~~L~~L~L~~n~-l~~~~~~~~~---~l~~L~~L~Ls~n-~l~~~~~-~----------~~l~~L~~L~Ls~n-~l~~   94 (317)
T 3o53_A           32 SAWNVKELDLSGNP-LSQISAADLA---PFTKLELLNLSSN-VLYETLD-L----------ESLSTLRTLDLNNN-YVQE   94 (317)
T ss_dssp             TGGGCSEEECTTSC-CCCCCHHHHT---TCTTCCEEECTTS-CCEEEEE-E----------TTCTTCCEEECCSS-EEEE
T ss_pred             cCCCCCEEECcCCc-cCcCCHHHhh---CCCcCCEEECCCC-cCCcchh-h----------hhcCCCCEEECcCC-cccc
Confidence            35566666666653 3333333333   5666666666666 3333322 1          45666666666654 3333


Q ss_pred             cccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCcc
Q 039042          234 FCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDEL  313 (526)
Q Consensus       234 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  313 (526)
                      ++       ..++|++|++++| .+..++..        .+++|++|++++|.+.. +.......+++|++|++++|...
T Consensus        95 l~-------~~~~L~~L~l~~n-~l~~~~~~--------~~~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~  157 (317)
T 3o53_A           95 LL-------VGPSIETLHAANN-NISRVSCS--------RGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEID  157 (317)
T ss_dssp             EE-------ECTTCCEEECCSS-CCSEEEEC--------CCSSCEEEECCSSCCCS-GGGBCTGGGSSEEEEECTTSCCC
T ss_pred             cc-------CCCCcCEEECCCC-ccCCcCcc--------ccCCCCEEECCCCCCCC-ccchhhhccCCCCEEECCCCCCC
Confidence            32       2366666666666 34444332        35566666666555421 11122234566777777765433


Q ss_pred             cccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccc
Q 039042          314 TTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINL  391 (526)
Q Consensus       314 ~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l  391 (526)
                      .  ..+......+++|++|+++ +....++..    ..+++|++|+++ +.+..+++. +..+++|+.|++++| .+..+
T Consensus       158 ~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N-~l~~l  229 (317)
T 3o53_A          158 T--VNFAELAASSDTLEHLNLQYNFIYDVKGQ----VVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNN-KLVLI  229 (317)
T ss_dssp             E--EEGGGGGGGTTTCCEEECTTSCCCEEECC----CCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTS-CCCEE
T ss_pred             c--ccHHHHhhccCcCCEEECCCCcCcccccc----cccccCCEEECCCCcCCcchhh-hcccCcccEEECcCC-cccch
Confidence            3  2233333467777777777 333222222    235778888887 777777554 667788888888877 45566


Q ss_pred             cCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccc
Q 039042          392 VPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMIT  439 (526)
Q Consensus       392 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~  439 (526)
                      |..+..+++|+.|++++++ +.....+.++..+++|+.+++.++..+.
T Consensus       230 ~~~~~~l~~L~~L~l~~N~-~~~~~~~~~~~~~~~L~~l~l~~~~~l~  276 (317)
T 3o53_A          230 EKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQTVKKLT  276 (317)
T ss_dssp             CTTCCCCTTCCEEECTTCC-CBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             hhHhhcCCCCCEEEccCCC-ccCcCHHHHHhccccceEEECCCchhcc
Confidence            6666777788888887764 3311222456666777777776655444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.73  E-value=4.6e-17  Score=161.25  Aligned_cols=181  Identities=17%  Similarity=0.153  Sum_probs=126.4

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      .++|++|++++|+++.+...   . +..+++|++|++++| .++.+.|..+.   .+++|++|++++| .+..++...  
T Consensus        51 ~~~L~~L~l~~n~i~~~~~~---~-~~~l~~L~~L~L~~n-~l~~~~~~~~~---~l~~L~~L~Ls~n-~l~~~~~~~--  119 (353)
T 2z80_A           51 TEAVKSLDLSNNRITYISNS---D-LQRCVNLQALVLTSN-GINTIEEDSFS---SLGSLEHLDLSYN-YLSNLSSSW--  119 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTT---T-TTTCTTCCEEECTTS-CCCEECTTTTT---TCTTCCEEECCSS-CCSSCCHHH--
T ss_pred             cccCcEEECCCCcCcccCHH---H-hccCCCCCEEECCCC-ccCccCHhhcC---CCCCCCEEECCCC-cCCcCCHhH--
Confidence            45788888888877765221   1 557888999999887 45555565555   7889999999888 565554431  


Q ss_pred             hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY  286 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  286 (526)
                             +..+++|++|+++++ .+..++.. ..+..+++|++|++++|..+..+++..+     ..+++|++|++++|.
T Consensus       120 -------~~~l~~L~~L~L~~n-~l~~l~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          120 -------FKPLSSLTFLNLLGN-PYKTLGET-SLFSHLTKLQILRVGNMDTFTKIQRKDF-----AGLTFLEELEIDASD  185 (353)
T ss_dssp             -------HTTCTTCSEEECTTC-CCSSSCSS-CSCTTCTTCCEEEEEESSSCCEECTTTT-----TTCCEEEEEEEEETT
T ss_pred             -------hCCCccCCEEECCCC-CCcccCch-hhhccCCCCcEEECCCCccccccCHHHc-----cCCCCCCEEECCCCC
Confidence                   156888999999874 56666651 1266789999999998866777665433     367889999998876


Q ss_pred             ccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEee
Q 039042          287 IITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEG  336 (526)
Q Consensus       287 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~  336 (526)
                      +.. +..-....+++|++|+++++.. +  .++...+..+++|+.|+++.
T Consensus       186 l~~-~~~~~l~~l~~L~~L~l~~n~l-~--~~~~~~~~~~~~L~~L~L~~  231 (353)
T 2z80_A          186 LQS-YEPKSLKSIQNVSHLILHMKQH-I--LLLEIFVDVTSSVECLELRD  231 (353)
T ss_dssp             CCE-ECTTTTTTCSEEEEEEEECSCS-T--THHHHHHHHTTTEEEEEEES
T ss_pred             cCc-cCHHHHhccccCCeecCCCCcc-c--cchhhhhhhcccccEEECCC
Confidence            632 1111223567899999988764 4  45666667788999998883

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.72  E-value=1.1e-16  Score=168.88  Aligned_cols=254  Identities=18%  Similarity=0.075  Sum_probs=163.3

Q ss_pred             CcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccccccchhhhhhhhhhcccccccccccccccccccccC
Q 039042           76 SQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGI  155 (526)
Q Consensus        76 ~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l  155 (526)
                      .++++|+++++.....|..+                               .++|++|++++|.++.+    |.    .+
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l-------------------------------~~~L~~L~L~~N~l~~l----p~----~l   80 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCL-------------------------------PAHITTLVIPDNNLTSL----PA----LP   80 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCC-------------------------------CTTCSEEEECSCCCSCC----CC----CC
T ss_pred             CCCcEEEecCCCcCccChhh-------------------------------CCCCcEEEecCCCCCCC----CC----cC
Confidence            46889999888766545532                               45778888888877755    21    46


Q ss_pred             CcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccc
Q 039042          156 QNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFC  235 (526)
Q Consensus       156 ~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~  235 (526)
                      ++|++|++++|. ++.+ |.      .+++|++|++++| .+..++.             .+++|++|+++++ .+..++
T Consensus        81 ~~L~~L~Ls~N~-l~~l-p~------~l~~L~~L~Ls~N-~l~~l~~-------------~l~~L~~L~L~~N-~l~~lp  137 (622)
T 3g06_A           81 PELRTLEVSGNQ-LTSL-PV------LPPGLLELSIFSN-PLTHLPA-------------LPSGLCKLWIFGN-QLTSLP  137 (622)
T ss_dssp             TTCCEEEECSCC-CSCC-CC------CCTTCCEEEECSC-CCCCCCC-------------CCTTCCEEECCSS-CCSCCC
T ss_pred             CCCCEEEcCCCc-CCcC-CC------CCCCCCEEECcCC-cCCCCCC-------------CCCCcCEEECCCC-CCCcCC
Confidence            778888888764 4443 43      4677888888877 4555432             3667888888764 566665


Q ss_pred             cCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCcccc
Q 039042          236 TGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTT  315 (526)
Q Consensus       236 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  315 (526)
                      ..      +++|++|++++| .+..++         ..+++|+.|++++|.+.    .+| ..+++|+.|++++|.. + 
T Consensus       138 ~~------l~~L~~L~Ls~N-~l~~l~---------~~~~~L~~L~L~~N~l~----~l~-~~~~~L~~L~Ls~N~l-~-  194 (622)
T 3g06_A          138 VL------PPGLQELSVSDN-QLASLP---------ALPSELCKLWAYNNQLT----SLP-MLPSGLQELSVSDNQL-A-  194 (622)
T ss_dssp             CC------CTTCCEEECCSS-CCSCCC---------CCCTTCCEEECCSSCCS----CCC-CCCTTCCEEECCSSCC-S-
T ss_pred             CC------CCCCCEEECcCC-cCCCcC---------CccCCCCEEECCCCCCC----CCc-ccCCCCcEEECCCCCC-C-
Confidence            43      477888888877 555544         23567788888766553    244 4567788888877653 3 


Q ss_pred             cccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccC
Q 039042          316 ILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVP  393 (526)
Q Consensus       316 ~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~  393 (526)
                       .+|.    .+++|+.|.+..+ ...++      ..+++|++|+++ +.+..++    ..+++|+.|++++| .+..+|.
T Consensus       195 -~l~~----~~~~L~~L~L~~N~l~~l~------~~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N-~L~~lp~  258 (622)
T 3g06_A          195 -SLPT----LPSELYKLWAYNNRLTSLP------ALPSGLKELIVSGNRLTSLP----VLPSELKELMVSGN-RLTSLPM  258 (622)
T ss_dssp             -CCCC----CCTTCCEEECCSSCCSSCC------CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC
T ss_pred             -CCCC----ccchhhEEECcCCcccccC------CCCCCCCEEEccCCccCcCC----CCCCcCcEEECCCC-CCCcCCc
Confidence             2332    2467777777733 33333      223677777777 6666654    33467777777776 4555544


Q ss_pred             CCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEcccc
Q 039042          394 SSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCA  436 (526)
Q Consensus       394 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~  436 (526)
                         .+++|+.|++++| +++.+|  ..+..+++|+.|++++++
T Consensus       259 ---~~~~L~~L~Ls~N-~L~~lp--~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          259 ---LPSGLLSLSVYRN-QLTRLP--ESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             ---CCTTCCEEECCSS-CCCSCC--GGGGGSCTTCEEECCSCC
T ss_pred             ---ccccCcEEeCCCC-CCCcCC--HHHhhccccCEEEecCCC
Confidence               5567777777776 566655  345677777777777755

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.70  E-value=1.5e-16  Score=163.02  Aligned_cols=225  Identities=15%  Similarity=0.053  Sum_probs=150.4

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      .+++++|+|++|+++.+..   .. +..+++|++|++++| .++.+.|..+.   ++++|++|++++| .+..++...  
T Consensus        74 ~~~l~~L~L~~n~i~~~~~---~~-~~~l~~L~~L~Ls~n-~i~~~~~~~~~---~l~~L~~L~L~~n-~l~~~~~~~--  142 (452)
T 3zyi_A           74 PSNTRYLNLMENNIQMIQA---DT-FRHLHHLEVLQLGRN-SIRQIEVGAFN---GLASLNTLELFDN-WLTVIPSGA--  142 (452)
T ss_dssp             CTTCSEEECCSSCCCEECT---TT-TTTCTTCCEEECCSS-CCCEECTTTTT---TCTTCCEEECCSS-CCSBCCTTT--
T ss_pred             CCCccEEECcCCcCceECH---HH-cCCCCCCCEEECCCC-ccCCcChhhcc---CcccCCEEECCCC-cCCccChhh--
Confidence            4678888888887775522   12 557888999999886 45555555554   7888999999888 566555432  


Q ss_pred             hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY  286 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  286 (526)
                             +..+++|++|+++++ .+..++...  +..+++|++|++++|..+..++...+     ..+++|+.|++++|.
T Consensus       143 -------~~~l~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~l~~~~~l~~i~~~~~-----~~l~~L~~L~L~~n~  207 (452)
T 3zyi_A          143 -------FEYLSKLRELWLRNN-PIESIPSYA--FNRVPSLMRLDLGELKKLEYISEGAF-----EGLFNLKYLNLGMCN  207 (452)
T ss_dssp             -------SSSCTTCCEEECCSC-CCCEECTTT--TTTCTTCCEEECCCCTTCCEECTTTT-----TTCTTCCEEECTTSC
T ss_pred             -------hcccCCCCEEECCCC-CcceeCHhH--HhcCCcccEEeCCCCCCccccChhhc-----cCCCCCCEEECCCCc
Confidence                   156888999998874 566666543  66788899999988878887776543     367888888888776


Q ss_pred             ccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCce
Q 039042          287 IITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLK  364 (526)
Q Consensus       287 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~  364 (526)
                      +.. +.  ....+++|++|++++|....   ++...+..+++|+.|++..+ ...++...+  ..+++|+.|++. +.+.
T Consensus       208 l~~-~~--~~~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~  279 (452)
T 3zyi_A          208 IKD-MP--NLTPLVGLEELEMSGNHFPE---IRPGSFHGLSSLKKLWVMNSQVSLIERNAF--DGLASLVELNLAHNNLS  279 (452)
T ss_dssp             CSS-CC--CCTTCTTCCEEECTTSCCSE---ECGGGGTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCS
T ss_pred             ccc-cc--cccccccccEEECcCCcCcc---cCcccccCccCCCEEEeCCCcCceECHHHh--cCCCCCCEEECCCCcCC
Confidence            632 11  12356788888888765433   33446677777777777733 333332322  445666666666 6666


Q ss_pred             eeccccccccCcccEEEEecc
Q 039042          365 YILKQESSIMNNLVILHVTNC  385 (526)
Q Consensus       365 ~~~~~~~~~l~~L~~L~l~~c  385 (526)
                      .+++..+..+++|+.|+++++
T Consensus       280 ~~~~~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          280 SLPHDLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             CCCTTSSTTCTTCCEEECCSS
T ss_pred             ccChHHhccccCCCEEEccCC
Confidence            666666666666666666654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.70  E-value=1.5e-16  Score=154.60  Aligned_cols=249  Identities=14%  Similarity=0.075  Sum_probs=131.1

Q ss_pred             CcccEEEeccCCCce--ecCCcccccccccccccEEeeec-cccccEEEeecchhhhcccccccccccceeecccCcccc
Q 039042          156 QNLTHLTLYNCMNLR--CLFSSCTVSNNSFVRLQYIRIEK-CHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLT  232 (526)
Q Consensus       156 ~~L~~L~L~~c~~l~--~l~p~~l~~l~~l~~L~~L~l~~-~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~  232 (526)
                      .+++.|+++++....  . .|..+.   .+++|++|++++ +.....+|..+          ..+++|++|+++++ .+.
T Consensus        50 ~~l~~L~L~~~~l~~~~~-~~~~l~---~l~~L~~L~L~~~n~l~~~~p~~l----------~~l~~L~~L~Ls~n-~l~  114 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYP-IPSSLA---NLPYLNFLYIGGINNLVGPIPPAI----------AKLTQLHYLYITHT-NVS  114 (313)
T ss_dssp             CCEEEEEEECCCCSSCEE-CCGGGG---GCTTCSEEEEEEETTEESCCCGGG----------GGCTTCSEEEEEEE-CCE
T ss_pred             ceEEEEECCCCCccCCcc-cChhHh---CCCCCCeeeCCCCCcccccCChhH----------hcCCCCCEEECcCC-eeC
Confidence            567777777764332  2 354444   677777777774 42222333332          56677777777764 333


Q ss_pred             -ccccCcccccCCCCccEEEeccCCCce-eccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeC
Q 039042          233 -SFCTGDVHMLEFPSLKELWISRCPEFM-VRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFV  310 (526)
Q Consensus       233 -~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  310 (526)
                       .+|..   +..+++|++|++++| .+. .+|..+      ..+++|++|++++|.+..                     
T Consensus       115 ~~~p~~---~~~l~~L~~L~Ls~N-~l~~~~p~~~------~~l~~L~~L~L~~N~l~~---------------------  163 (313)
T 1ogq_A          115 GAIPDF---LSQIKTLVTLDFSYN-ALSGTLPPSI------SSLPNLVGITFDGNRISG---------------------  163 (313)
T ss_dssp             EECCGG---GGGCTTCCEEECCSS-EEESCCCGGG------GGCTTCCEEECCSSCCEE---------------------
T ss_pred             CcCCHH---HhCCCCCCEEeCCCC-ccCCcCChHH------hcCCCCCeEECcCCcccC---------------------
Confidence             34433   556677777777766 343 233333      345666666666554421                     


Q ss_pred             CcccccccchhHhhcCC-CccEEEEeec--cccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccC
Q 039042          311 DELTTILSLDDFLQRFP-TLKVLQIEGY--SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCH  386 (526)
Q Consensus       311 ~~l~~~~~~~~~l~~l~-~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~  386 (526)
                            .+|. .+..++ +|+.|+++.+  .+..+.. +  ..++ |++|+++ +.+....+..+..+++|+.|+++++.
T Consensus       164 ------~~p~-~l~~l~~~L~~L~L~~N~l~~~~~~~-~--~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  232 (313)
T 1ogq_A          164 ------AIPD-SYGSFSKLFTSMTISRNRLTGKIPPT-F--ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS  232 (313)
T ss_dssp             ------ECCG-GGGCCCTTCCEEECCSSEEEEECCGG-G--GGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred             ------cCCH-HHhhhhhcCcEEECcCCeeeccCChH-H--hCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence                  1222 222333 4444444421  1111111 0  1222 5556665 55555555666667777777777764


Q ss_pred             CcccccCCCccCCCcCEEEEccCCCcc-cccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCe
Q 039042          387 RLINLVPSSTSFQNLTSLEISYCNGLK-NVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNE  465 (526)
Q Consensus       387 ~l~~l~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~  465 (526)
                      ..... +.+..+++|++|+++++ .+. ..+  ..+..+++|++|+++++.-...+|..             ..+++|+.
T Consensus       233 l~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~ip~~-------------~~l~~L~~  295 (313)
T 1ogq_A          233 LAFDL-GKVGLSKNLNGLDLRNN-RIYGTLP--QGLTQLKFLHSLNVSFNNLCGEIPQG-------------GNLQRFDV  295 (313)
T ss_dssp             ECCBG-GGCCCCTTCCEEECCSS-CCEECCC--GGGGGCTTCCEEECCSSEEEEECCCS-------------TTGGGSCG
T ss_pred             eeeec-CcccccCCCCEEECcCC-cccCcCC--hHHhcCcCCCEEECcCCcccccCCCC-------------ccccccCh
Confidence            33233 23555677777777766 344 333  34556677777777775433344432             13566777


Q ss_pred             EecCCCccccccC
Q 039042          466 LKLLNLKSLRSFY  478 (526)
Q Consensus       466 L~l~~~~~l~~l~  478 (526)
                      +++.+++.+...|
T Consensus       296 l~l~~N~~lc~~p  308 (313)
T 1ogq_A          296 SAYANNKCLCGSP  308 (313)
T ss_dssp             GGTCSSSEEESTT
T ss_pred             HHhcCCCCccCCC
Confidence            7776665554433

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.70  E-value=1.1e-17  Score=163.07  Aligned_cols=263  Identities=14%  Similarity=0.058  Sum_probs=157.3

Q ss_pred             ceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccccccchhhhhhhhh
Q 039042           53 LELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEKLEK  132 (526)
Q Consensus        53 L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~l~~L~~  132 (526)
                      +++.++....+...+..+ ...+++|++|++++|.....+...+.+                            +++|++
T Consensus        12 l~i~~ls~~~l~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~----------------------------l~~L~~   62 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASL-RQSAWNVKELDLSGNPLSQISAADLAP----------------------------FTKLEL   62 (317)
T ss_dssp             EEEESCCTTTHHHHHHHH-HTTGGGCSEEECTTSCCCCCCHHHHTT----------------------------CTTCCE
T ss_pred             eeEeeccccchhhhHHHH-hccCCCCCEEECcCCccCcCCHHHhhC----------------------------CCcCCE
Confidence            445556555555444432 235678999999988766654433333                            667777


Q ss_pred             hcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhccc
Q 039042          133 LELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKN  212 (526)
Q Consensus       133 L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~  212 (526)
                      |++++|.++...   +   +..+++|++|++++|. ++.+ |       ..++|++|++++| .+..++.          
T Consensus        63 L~Ls~n~l~~~~---~---~~~l~~L~~L~Ls~n~-l~~l-~-------~~~~L~~L~l~~n-~l~~~~~----------  116 (317)
T 3o53_A           63 LNLSSNVLYETL---D---LESLSTLRTLDLNNNY-VQEL-L-------VGPSIETLHAANN-NISRVSC----------  116 (317)
T ss_dssp             EECTTSCCEEEE---E---ETTCTTCCEEECCSSE-EEEE-E-------ECTTCCEEECCSS-CCSEEEE----------
T ss_pred             EECCCCcCCcch---h---hhhcCCCCEEECcCCc-cccc-c-------CCCCcCEEECCCC-ccCCcCc----------
Confidence            888777666432   1   3467888888888763 4443 2       3467888888887 5665544          


Q ss_pred             ccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccce
Q 039042          213 NIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKF  292 (526)
Q Consensus       213 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  292 (526)
                        ..+++|++|+++++ .+..++...  +..+++|++|++++| .+..+++....    ..+++|++|++++|.+.. + 
T Consensus       117 --~~~~~L~~L~l~~N-~l~~~~~~~--~~~l~~L~~L~Ls~N-~l~~~~~~~~~----~~l~~L~~L~L~~N~l~~-~-  184 (317)
T 3o53_A          117 --SRGQGKKNIYLANN-KITMLRDLD--EGCRSRVQYLDLKLN-EIDTVNFAELA----ASSDTLEHLNLQYNFIYD-V-  184 (317)
T ss_dssp             --CCCSSCEEEECCSS-CCCSGGGBC--TGGGSSEEEEECTTS-CCCEEEGGGGG----GGTTTCCEEECTTSCCCE-E-
T ss_pred             --cccCCCCEEECCCC-CCCCccchh--hhccCCCCEEECCCC-CCCcccHHHHh----hccCcCCEEECCCCcCcc-c-
Confidence              34777888888774 455554432  566788888888887 45554433211    256788888888776532 1 


Q ss_pred             eccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cCce-eeccc
Q 039042          293 IFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLK-YILKQ  369 (526)
Q Consensus       293 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~-~~~~~  369 (526)
                       -+...+++|++|++++|..-   .++.. +..+++|+.|+++ +....+|.. +  ..+++|+.|++. +.+. ...+.
T Consensus       185 -~~~~~l~~L~~L~Ls~N~l~---~l~~~-~~~l~~L~~L~L~~N~l~~l~~~-~--~~l~~L~~L~l~~N~~~~~~~~~  256 (317)
T 3o53_A          185 -KGQVVFAKLKTLDLSSNKLA---FMGPE-FQSAAGVTWISLRNNKLVLIEKA-L--RFSQNLEHFDLRGNGFHCGTLRD  256 (317)
T ss_dssp             -ECCCCCTTCCEEECCSSCCC---EECGG-GGGGTTCSEEECTTSCCCEECTT-C--CCCTTCCEEECTTCCCBHHHHHH
T ss_pred             -ccccccccCCEEECCCCcCC---cchhh-hcccCcccEEECcCCcccchhhH-h--hcCCCCCEEEccCCCccCcCHHH
Confidence             11224677888888776543   23332 5667777777777 333333322 1  445666666666 5554 33334


Q ss_pred             cccccCcccEEEEeccCCccc
Q 039042          370 ESSIMNNLVILHVTNCHRLIN  390 (526)
Q Consensus       370 ~~~~l~~L~~L~l~~c~~l~~  390 (526)
                      .+..++.|+.+++.++..+..
T Consensus       257 ~~~~~~~L~~l~l~~~~~l~~  277 (317)
T 3o53_A          257 FFSKNQRVQTVAKQTVKKLTG  277 (317)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHS
T ss_pred             HHhccccceEEECCCchhccC
Confidence            455556666666665554443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.70  E-value=3.5e-19  Score=183.21  Aligned_cols=171  Identities=19%  Similarity=0.107  Sum_probs=82.6

Q ss_pred             hhhhhhhcccccccccccccccccccccCC----cccEEEeccCCCce---ecCCcccccccccccccEEeeeccccccE
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQ----NLTHLTLYNCMNLR---CLFSSCTVSNNSFVRLQYIRIEKCHVLEE  199 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~----~L~~L~L~~c~~l~---~l~p~~l~~l~~l~~L~~L~l~~~~~l~~  199 (526)
                      +++|++|++++|.+.+......   ...++    +|++|++++|....   ..+|..+.   .+++|++|++++|. +..
T Consensus        55 ~~~L~~L~Ls~n~l~~~~~~~l---~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~---~~~~L~~L~Ls~n~-i~~  127 (461)
T 1z7x_W           55 NPALAELNLRSNELGDVGVHCV---LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR---TLPTLQELHLSDNL-LGD  127 (461)
T ss_dssp             CTTCCEEECTTCCCHHHHHHHH---HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTT---SCTTCCEEECCSSB-CHH
T ss_pred             CCCcCEEeCCCCcCChHHHHHH---HHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHc---cCCceeEEECCCCc-Cch
Confidence            5778888888886654211101   11233    68888888875221   01244433   67788888888773 332


Q ss_pred             EEeecchhhhcccc-cccccccceeecccCccccccccC--cccccCCCCccEEEeccCCCceeccccccCCccccccCC
Q 039042          200 LIVVDNQEEERKNN-IVMFPQLQYLKMYDLEKLTSFCTG--DVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPN  276 (526)
Q Consensus       200 l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~  276 (526)
                      .......     .. ....++|++|++++| .+......  ...+..+++|++|++++|. +...........+....++
T Consensus       128 ~~~~~l~-----~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~  200 (461)
T 1z7x_W          128 AGLQLLC-----EGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQ  200 (461)
T ss_dssp             HHHHHHH-----HHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHH-----HHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCC
Confidence            1110000     00 022456888888775 33321100  0114456777777777773 3322111100000012447


Q ss_pred             cceEEEeecccccc-ceeccc--cccccccEEEeeeCC
Q 039042          277 LEELIVDAEYIITN-KFIFSE--DLLCKLKCLDVEFVD  311 (526)
Q Consensus       277 L~~L~l~~~~~~~~-~~~~~~--~~~~~L~~L~l~~~~  311 (526)
                      |++|++++|.+... ...++.  ..+++|++|++++|.
T Consensus       201 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  238 (461)
T 1z7x_W          201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK  238 (461)
T ss_dssp             CCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             ceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence            77777776655321 001111  135666677766653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.70  E-value=3.2e-16  Score=165.33  Aligned_cols=256  Identities=20%  Similarity=0.144  Sum_probs=176.4

Q ss_pred             cceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccccccchhhhhhhh
Q 039042           52 DLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEKLE  131 (526)
Q Consensus        52 ~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~l~~L~  131 (526)
                      +++.++++++++..+|..+    .++|++|++++|.....|.    .                            +++|+
T Consensus        41 ~l~~L~ls~n~L~~lp~~l----~~~L~~L~L~~N~l~~lp~----~----------------------------l~~L~   84 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCL----PAHITTLVIPDNNLTSLPA----L----------------------------PPELR   84 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCC----CTTCSEEEECSCCCSCCCC----C----------------------------CTTCC
T ss_pred             CCcEEEecCCCcCccChhh----CCCCcEEEecCCCCCCCCC----c----------------------------CCCCC
Confidence            4788889988888888753    3899999999997554444    1                            66788


Q ss_pred             hhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcc
Q 039042          132 KLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERK  211 (526)
Q Consensus       132 ~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~  211 (526)
                      +|++++|.++.+    |.    .+++|++|++++|. ++.+ |.      .+++|+.|++++| .+..++.         
T Consensus        85 ~L~Ls~N~l~~l----p~----~l~~L~~L~Ls~N~-l~~l-~~------~l~~L~~L~L~~N-~l~~lp~---------  138 (622)
T 3g06_A           85 TLEVSGNQLTSL----PV----LPPGLLELSIFSNP-LTHL-PA------LPSGLCKLWIFGN-QLTSLPV---------  138 (622)
T ss_dssp             EEEECSCCCSCC----CC----CCTTCCEEEECSCC-CCCC-CC------CCTTCCEEECCSS-CCSCCCC---------
T ss_pred             EEEcCCCcCCcC----CC----CCCCCCEEECcCCc-CCCC-CC------CCCCcCEEECCCC-CCCcCCC---------
Confidence            888888877654    21    46778888887764 4443 43      4567888888877 4555432         


Q ss_pred             cccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccc
Q 039042          212 NNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNK  291 (526)
Q Consensus       212 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  291 (526)
                          .+++|++|++++| .+..++.      .+++|+.|.+++| .+..++         ..+++|+.|++++|.+.   
T Consensus       139 ----~l~~L~~L~Ls~N-~l~~l~~------~~~~L~~L~L~~N-~l~~l~---------~~~~~L~~L~Ls~N~l~---  194 (622)
T 3g06_A          139 ----LPPGLQELSVSDN-QLASLPA------LPSELCKLWAYNN-QLTSLP---------MLPSGLQELSVSDNQLA---  194 (622)
T ss_dssp             ----CCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSS-CCSCCC---------CCCTTCCEEECCSSCCS---
T ss_pred             ----CCCCCCEEECcCC-cCCCcCC------ccCCCCEEECCCC-CCCCCc---------ccCCCCcEEECCCCCCC---
Confidence                3577888888775 5555543      2567888888777 555554         24677888888876553   


Q ss_pred             eeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCceeeccc
Q 039042          292 FIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQ  369 (526)
Q Consensus       292 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~  369 (526)
                       .+|. .+++|+.|++++|.. +  .+|.    .+++|+.|+++.+ ...+|      ..+++|++|+++ +.+..++. 
T Consensus       195 -~l~~-~~~~L~~L~L~~N~l-~--~l~~----~~~~L~~L~Ls~N~L~~lp------~~l~~L~~L~Ls~N~L~~lp~-  258 (622)
T 3g06_A          195 -SLPT-LPSELYKLWAYNNRL-T--SLPA----LPSGLKELIVSGNRLTSLP------VLPSELKELMVSGNRLTSLPM-  258 (622)
T ss_dssp             -CCCC-CCTTCCEEECCSSCC-S--SCCC----CCTTCCEEECCSSCCSCCC------CCCTTCCEEECCSSCCSCCCC-
T ss_pred             -CCCC-ccchhhEEECcCCcc-c--ccCC----CCCCCCEEEccCCccCcCC------CCCCcCcEEECCCCCCCcCCc-
Confidence             2332 346788888877643 3  2332    3477888888843 44344      344788899988 88887764 


Q ss_pred             cccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCccc
Q 039042          370 ESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKN  414 (526)
Q Consensus       370 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~  414 (526)
                         .+++|+.|++++| .+..+|..+..+++|+.|++++++ +..
T Consensus       259 ---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~-l~~  298 (622)
T 3g06_A          259 ---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP-LSE  298 (622)
T ss_dssp             ---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC-CCH
T ss_pred             ---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC-CCC
Confidence               4688999999988 455777778889999999999874 443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.70  E-value=1.2e-16  Score=155.02  Aligned_cols=62  Identities=11%  Similarity=0.082  Sum_probs=39.0

Q ss_pred             cccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccC-CCcCEEEEccCC
Q 039042          349 GMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSF-QNLTSLEISYCN  410 (526)
Q Consensus       349 ~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~-~~L~~L~l~~c~  410 (526)
                      ..+++|++|++. +.+..++...+..+++|+.|++++|......+..+..+ ++|+.|++++++
T Consensus       196 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          196 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             TTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             cCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            344566666666 56666655566667777777777775444444445555 477788777763

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.69  E-value=4.2e-16  Score=159.11  Aligned_cols=242  Identities=14%  Similarity=0.153  Sum_probs=128.8

Q ss_pred             hhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhh
Q 039042          130 LEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEE  209 (526)
Q Consensus       130 L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~  209 (526)
                      .+.++.++.+++.+    |.+   -.++++.|+|++|. ++.+.+..+.   .+++|++|++++| .+..++...     
T Consensus        45 ~~~v~c~~~~l~~i----P~~---~~~~l~~L~L~~n~-i~~~~~~~~~---~l~~L~~L~Ls~n-~i~~i~~~~-----  107 (440)
T 3zyj_A           45 FSKVICVRKNLREV----PDG---ISTNTRLLNLHENQ-IQIIKVNSFK---HLRHLEILQLSRN-HIRTIEIGA-----  107 (440)
T ss_dssp             SCEEECCSCCCSSC----CSC---CCTTCSEEECCSCC-CCEECTTTTS---SCSSCCEEECCSS-CCCEECGGG-----
T ss_pred             CCEEEeCCCCcCcC----CCC---CCCCCcEEEccCCc-CCeeCHHHhh---CCCCCCEEECCCC-cCCccChhh-----
Confidence            44555555566655    433   34677888887754 4554444444   6778888888777 555554321     


Q ss_pred             cccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccc
Q 039042          210 RKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIIT  289 (526)
Q Consensus       210 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  289 (526)
                          +..+++|++|+++++ .++.++...  +..+++|++|+++++ .+..++...+     ..+++|++|+++++....
T Consensus       108 ----~~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~N-~i~~~~~~~~-----~~l~~L~~L~l~~~~~l~  174 (440)
T 3zyj_A          108 ----FNGLANLNTLELFDN-RLTTIPNGA--FVYLSKLKELWLRNN-PIESIPSYAF-----NRIPSLRRLDLGELKRLS  174 (440)
T ss_dssp             ----GTTCSSCCEEECCSS-CCSSCCTTT--SCSCSSCCEEECCSC-CCCEECTTTT-----TTCTTCCEEECCCCTTCC
T ss_pred             ----ccCCccCCEEECCCC-cCCeeCHhH--hhccccCceeeCCCC-cccccCHHHh-----hhCcccCEeCCCCCCCcc
Confidence                146777777777764 566665432  556777777777777 4555554332     256677777776432222


Q ss_pred             cceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cCceeec
Q 039042          290 NKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLKYIL  367 (526)
Q Consensus       290 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~  367 (526)
                      .+..-....+++|++|++++|.. +  .+|  .+..+++|+.|+++ +....++...+  ..+++|++|++. +.+..+.
T Consensus       175 ~i~~~~~~~l~~L~~L~L~~n~l-~--~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~  247 (440)
T 3zyj_A          175 YISEGAFEGLSNLRYLNLAMCNL-R--EIP--NLTPLIKLDELDLSGNHLSAIRPGSF--QGLMHLQKLWMIQSQIQVIE  247 (440)
T ss_dssp             EECTTTTTTCSSCCEEECTTSCC-S--SCC--CCTTCSSCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTCCCCEEC
T ss_pred             eeCcchhhcccccCeecCCCCcC-c--ccc--ccCCCcccCEEECCCCccCccChhhh--ccCccCCEEECCCCceeEEC
Confidence            11111123455666666666532 2  233  24455555555555 22222222222  344555555555 5555555


Q ss_pred             cccccccCcccEEEEeccCCcccccC-CCccCCCcCEEEEccC
Q 039042          368 KQESSIMNNLVILHVTNCHRLINLVP-SSTSFQNLTSLEISYC  409 (526)
Q Consensus       368 ~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c  409 (526)
                      +..+..+++|+.|+++++ .+..++. .+..+++|+.|+++++
T Consensus       248 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  289 (440)
T 3zyj_A          248 RNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHN  289 (440)
T ss_dssp             TTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSS
T ss_pred             hhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCC
Confidence            555555555555555554 2223322 2234455555555543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.69  E-value=3.9e-16  Score=159.95  Aligned_cols=240  Identities=15%  Similarity=0.137  Sum_probs=116.7

Q ss_pred             hhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhc
Q 039042          131 EKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEER  210 (526)
Q Consensus       131 ~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~  210 (526)
                      ..++.++.+++.+    |.+   -.+++++|++++|. ++.+.|..+.   .+++|++|++++| .+..++...      
T Consensus        57 ~~v~c~~~~l~~i----P~~---~~~~l~~L~L~~n~-i~~~~~~~~~---~l~~L~~L~Ls~n-~i~~~~~~~------  118 (452)
T 3zyi_A           57 SKVVCTRRGLSEV----PQG---IPSNTRYLNLMENN-IQMIQADTFR---HLHHLEVLQLGRN-SIRQIEVGA------  118 (452)
T ss_dssp             CEEECCSSCCSSC----CSC---CCTTCSEEECCSSC-CCEECTTTTT---TCTTCCEEECCSS-CCCEECTTT------
T ss_pred             cEEEECCCCcCcc----CCC---CCCCccEEECcCCc-CceECHHHcC---CCCCCCEEECCCC-ccCCcChhh------
Confidence            4444455555544    332   34567777777753 4444454444   6777777777776 455543221      


Q ss_pred             ccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecccccc
Q 039042          211 KNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITN  290 (526)
Q Consensus       211 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  290 (526)
                         +..+++|++|+++++ .+..++...  +..+++|++|++++| .+..++...+     ..+++|+.|+++++.....
T Consensus       119 ---~~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~~~~~-----~~l~~L~~L~l~~~~~l~~  186 (452)
T 3zyi_A          119 ---FNGLASLNTLELFDN-WLTVIPSGA--FEYLSKLRELWLRNN-PIESIPSYAF-----NRVPSLMRLDLGELKKLEY  186 (452)
T ss_dssp             ---TTTCTTCCEEECCSS-CCSBCCTTT--SSSCTTCCEEECCSC-CCCEECTTTT-----TTCTTCCEEECCCCTTCCE
T ss_pred             ---ccCcccCCEEECCCC-cCCccChhh--hcccCCCCEEECCCC-CcceeCHhHH-----hcCCcccEEeCCCCCCccc
Confidence               145677777777764 455554442  555677777777766 4555554332     2456666666664322111


Q ss_pred             ceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCceeecc
Q 039042          291 KFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILK  368 (526)
Q Consensus       291 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~  368 (526)
                      +..-....+++|++|++++|..-.   +|  .+..+++|+.|+++.+ ...++...+  ..+++|++|++. +.+..+.+
T Consensus       187 i~~~~~~~l~~L~~L~L~~n~l~~---~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~  259 (452)
T 3zyi_A          187 ISEGAFEGLFNLKYLNLGMCNIKD---MP--NLTPLVGLEELEMSGNHFPEIRPGSF--HGLSSLKKLWVMNSQVSLIER  259 (452)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCSS---CC--CCTTCTTCCEEECTTSCCSEECGGGG--TTCTTCCEEECTTSCCCEECT
T ss_pred             cChhhccCCCCCCEEECCCCcccc---cc--cccccccccEEECcCCcCcccCcccc--cCccCCCEEEeCCCcCceECH
Confidence            111112234555555555543221   22  2344455555555522 222211111  334455555555 44444444


Q ss_pred             ccccccCcccEEEEeccCCcccccC-CCccCCCcCEEEEcc
Q 039042          369 QESSIMNNLVILHVTNCHRLINLVP-SSTSFQNLTSLEISY  408 (526)
Q Consensus       369 ~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~  408 (526)
                      ..+..+++|+.|+++++ .+..++. .+..+++|+.|++++
T Consensus       260 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~  299 (452)
T 3zyi_A          260 NAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHH  299 (452)
T ss_dssp             TTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCS
T ss_pred             HHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccC
Confidence            44444555555555544 2223322 123344455555544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.69  E-value=5.2e-16  Score=153.65  Aligned_cols=172  Identities=12%  Similarity=0.074  Sum_probs=86.4

Q ss_pred             cccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceecc
Q 039042          183 FVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRF  262 (526)
Q Consensus       183 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~  262 (526)
                      ++.....+.+++ .+..+|..            ..++|++|+++++ .++.++...  +..+++|++|++++| .+..++
T Consensus        30 C~~~~~c~~~~~-~l~~iP~~------------~~~~L~~L~l~~n-~i~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~   92 (353)
T 2z80_A           30 CDRNGICKGSSG-SLNSIPSG------------LTEAVKSLDLSNN-RITYISNSD--LQRCVNLQALVLTSN-GINTIE   92 (353)
T ss_dssp             ECTTSEEECCST-TCSSCCTT------------CCTTCCEEECTTS-CCCEECTTT--TTTCTTCCEEECTTS-CCCEEC
T ss_pred             CCCCeEeeCCCC-Cccccccc------------ccccCcEEECCCC-cCcccCHHH--hccCCCCCEEECCCC-ccCccC
Confidence            444455555554 45555442            2456777777764 456655432  566777777777777 555554


Q ss_pred             ccccCCccccccCCcceEEEeeccccccceecc---ccccccccEEEeeeCCcccccccch-hHhhcCCCccEEEEe-ec
Q 039042          263 KRTTNDLTKKVFPNLEELIVDAEYIITNKFIFS---EDLLCKLKCLDVEFVDELTTILSLD-DFLQRFPTLKVLQIE-GY  337 (526)
Q Consensus       263 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~-~~l~~l~~L~~L~l~-~~  337 (526)
                      +..+     ..+++|++|++++|.+..    ++   ...+++|++|+++++...   .++. ..+..+++|++|++. +.
T Consensus        93 ~~~~-----~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~---~l~~~~~~~~l~~L~~L~l~~n~  160 (353)
T 2z80_A           93 EDSF-----SSLGSLEHLDLSYNYLSN----LSSSWFKPLSSLTFLNLLGNPYK---TLGETSLFSHLTKLQILRVGNMD  160 (353)
T ss_dssp             TTTT-----TTCTTCCEEECCSSCCSS----CCHHHHTTCTTCSEEECTTCCCS---SSCSSCSCTTCTTCCEEEEEESS
T ss_pred             Hhhc-----CCCCCCCEEECCCCcCCc----CCHhHhCCCccCCEEECCCCCCc---ccCchhhhccCCCCcEEECCCCc
Confidence            4322     256677777776655421    22   124455666666554322   2332 334455555555555 21


Q ss_pred             -cccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEecc
Q 039042          338 -SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNC  385 (526)
Q Consensus       338 -~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c  385 (526)
                       ...++...+  ..+++|++|++. +.+..+.+..+..+++|++|+++++
T Consensus       161 ~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  208 (353)
T 2z80_A          161 TFTKIQRKDF--AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK  208 (353)
T ss_dssp             SCCEECTTTT--TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             cccccCHHHc--cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence             222222221  334444555444 4444444444444444444444444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.68  E-value=7.6e-16  Score=157.21  Aligned_cols=225  Identities=15%  Similarity=0.076  Sum_probs=171.7

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      .++++.|+|++|.++.+...   . +..+++|++|+|++|. ++.+.+..+.   .+++|++|++++| .+..++...  
T Consensus        63 ~~~l~~L~L~~n~i~~~~~~---~-~~~l~~L~~L~Ls~n~-i~~i~~~~~~---~l~~L~~L~L~~n-~l~~~~~~~--  131 (440)
T 3zyj_A           63 STNTRLLNLHENQIQIIKVN---S-FKHLRHLEILQLSRNH-IRTIEIGAFN---GLANLNTLELFDN-RLTTIPNGA--  131 (440)
T ss_dssp             CTTCSEEECCSCCCCEECTT---T-TSSCSSCCEEECCSSC-CCEECGGGGT---TCSSCCEEECCSS-CCSSCCTTT--
T ss_pred             CCCCcEEEccCCcCCeeCHH---H-hhCCCCCCEEECCCCc-CCccChhhcc---CCccCCEEECCCC-cCCeeCHhH--
Confidence            46799999999988765322   2 5689999999999974 5555555544   7999999999998 666665432  


Q ss_pred             hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY  286 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  286 (526)
                             +..+++|++|+++++ .+..++...  +..+++|++|++++|..+..++...+     ..+++|+.|++++|.
T Consensus       132 -------~~~l~~L~~L~L~~N-~i~~~~~~~--~~~l~~L~~L~l~~~~~l~~i~~~~~-----~~l~~L~~L~L~~n~  196 (440)
T 3zyj_A          132 -------FVYLSKLKELWLRNN-PIESIPSYA--FNRIPSLRRLDLGELKRLSYISEGAF-----EGLSNLRYLNLAMCN  196 (440)
T ss_dssp             -------SCSCSSCCEEECCSC-CCCEECTTT--TTTCTTCCEEECCCCTTCCEECTTTT-----TTCSSCCEEECTTSC
T ss_pred             -------hhccccCceeeCCCC-cccccCHHH--hhhCcccCEeCCCCCCCcceeCcchh-----hcccccCeecCCCCc
Confidence                   257899999999974 567776543  77899999999999888888776544     378999999999876


Q ss_pred             ccccceecc-ccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCc
Q 039042          287 IITNKFIFS-EDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDL  363 (526)
Q Consensus       287 ~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l  363 (526)
                      +.    .+| ...+++|++|++++|.. +  .++...+..+++|++|++..+ ...++...+  ..+++|++|++. +.+
T Consensus       197 l~----~~~~~~~l~~L~~L~Ls~N~l-~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l  267 (440)
T 3zyj_A          197 LR----EIPNLTPLIKLDELDLSGNHL-S--AIRPGSFQGLMHLQKLWMIQSQIQVIERNAF--DNLQSLVEINLAHNNL  267 (440)
T ss_dssp             CS----SCCCCTTCSSCCEEECTTSCC-C--EECTTTTTTCTTCCEEECTTCCCCEECTTSS--TTCTTCCEEECTTSCC
T ss_pred             Cc----cccccCCCcccCEEECCCCcc-C--ccChhhhccCccCCEEECCCCceeEEChhhh--cCCCCCCEEECCCCCC
Confidence            63    233 34678999999998754 3  344557888999999999843 444444443  677899999999 999


Q ss_pred             eeeccccccccCcccEEEEeccC
Q 039042          364 KYILKQESSIMNNLVILHVTNCH  386 (526)
Q Consensus       364 ~~~~~~~~~~l~~L~~L~l~~c~  386 (526)
                      ..+++..+..+++|+.|++++++
T Consensus       268 ~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          268 TLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CCCCTTTTSSCTTCCEEECCSSC
T ss_pred             CccChhHhccccCCCEEEcCCCC
Confidence            99988888889999999998764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.68  E-value=3.5e-16  Score=151.61  Aligned_cols=228  Identities=18%  Similarity=0.096  Sum_probs=165.1

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceec--CCcccccccccccccEEeeeccccccEEEeec
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCL--FSSCTVSNNSFVRLQYIRIEKCHVLEELIVVD  204 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~  204 (526)
                      .++|++|++++|.++.+    +.+.+..+++|++|++++|. ++..  .|..+.   .+++|++|++++| .+..++..+
T Consensus        27 ~~~l~~L~L~~n~l~~i----~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~---~~~~L~~L~Ls~n-~i~~l~~~~   97 (306)
T 2z66_A           27 PSSATRLELESNKLQSL----PHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDF---GTTSLKYLDLSFN-GVITMSSNF   97 (306)
T ss_dssp             CTTCCEEECCSSCCCCC----CTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHH---SCSCCCEEECCSC-SEEEEEEEE
T ss_pred             CCCCCEEECCCCccCcc----CHhHhhccccCCEEECCCCc-cCcccCcccccc---cccccCEEECCCC-ccccChhhc
Confidence            56899999999988765    32224578999999999875 3322  133333   6899999999998 667776654


Q ss_pred             chhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEee
Q 039042          205 NQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDA  284 (526)
Q Consensus       205 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~  284 (526)
                                ..+++|++|+++++ .+..++.. ..+..+++|++|++++| .+....+..+     ..+++|++|++++
T Consensus        98 ----------~~l~~L~~L~l~~n-~l~~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~-----~~l~~L~~L~l~~  159 (306)
T 2z66_A           98 ----------LGLEQLEHLDFQHS-NLKQMSEF-SVFLSLRNLIYLDISHT-HTRVAFNGIF-----NGLSSLEVLKMAG  159 (306)
T ss_dssp             ----------ETCTTCCEEECTTS-EEESSTTT-TTTTTCTTCCEEECTTS-CCEECSTTTT-----TTCTTCCEEECTT
T ss_pred             ----------CCCCCCCEEECCCC-cccccccc-hhhhhccCCCEEECCCC-cCCccchhhc-----ccCcCCCEEECCC
Confidence                      57999999999985 56666541 12678999999999998 4555554433     3689999999998


Q ss_pred             ccccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cC
Q 039042          285 EYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YD  362 (526)
Q Consensus       285 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~  362 (526)
                      |.+......-....+++|++|++++|....   ++...+..+++|++|+++ +....++...+  ..+++|++|++. +.
T Consensus       160 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQ---LSPTAFNSLSSLQVLNMSHNNFFSLDTFPY--KCLNSLQVLDYSLNH  234 (306)
T ss_dssp             CEEGGGEECSCCTTCTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTSCCSBCCSGGG--TTCTTCCEEECTTSC
T ss_pred             CccccccchhHHhhCcCCCEEECCCCCcCC---cCHHHhcCCCCCCEEECCCCccCccChhhc--cCcccCCEeECCCCC
Confidence            766431111223467899999999876433   444467889999999999 43333333222  567899999999 88


Q ss_pred             ceeecccccccc-CcccEEEEeccC
Q 039042          363 LKYILKQESSIM-NNLVILHVTNCH  386 (526)
Q Consensus       363 l~~~~~~~~~~l-~~L~~L~l~~c~  386 (526)
                      +....+..+..+ ++|+.|++++++
T Consensus       235 l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          235 IMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             CCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             CcccCHHHHHhhhccCCEEEccCCC
Confidence            888888788877 499999999874

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.68  E-value=5.1e-16  Score=148.88  Aligned_cols=111  Identities=14%  Similarity=0.105  Sum_probs=56.3

Q ss_pred             cCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccc
Q 039042          154 GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTS  233 (526)
Q Consensus       154 ~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~  233 (526)
                      ..++|++|+++++. ++.+.+..+.   .+++|++|++++| .+..+....         +..+++|++|+++++..+..
T Consensus        30 ~~~~l~~L~l~~n~-i~~~~~~~~~---~~~~L~~L~l~~n-~l~~~~~~~---------~~~l~~L~~L~l~~n~~l~~   95 (285)
T 1ozn_A           30 IPAASQRIFLHGNR-ISHVPAASFR---ACRNLTILWLHSN-VLARIDAAA---------FTGLALLEQLDLSDNAQLRS   95 (285)
T ss_dssp             CCTTCSEEECTTSC-CCEECTTTTT---TCTTCCEEECCSS-CCCEECTTT---------TTTCTTCCEEECCSCTTCCC
T ss_pred             CCCCceEEEeeCCc-CCccCHHHcc---cCCCCCEEECCCC-ccceeCHhh---------cCCccCCCEEeCCCCCCccc
Confidence            34566666666643 4444333333   5666666666666 444442211         14566666666666543555


Q ss_pred             cccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042          234 FCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY  286 (526)
Q Consensus       234 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  286 (526)
                      ++...  +..+++|++|++++| .+..+++..+     ..+++|++|++++|.
T Consensus        96 ~~~~~--~~~l~~L~~L~l~~n-~l~~~~~~~~-----~~l~~L~~L~l~~n~  140 (285)
T 1ozn_A           96 VDPAT--FHGLGRLHTLHLDRC-GLQELGPGLF-----RGLAALQYLYLQDNA  140 (285)
T ss_dssp             CCTTT--TTTCTTCCEEECTTS-CCCCCCTTTT-----TTCTTCCEEECCSSC
T ss_pred             cCHHH--hcCCcCCCEEECCCC-cCCEECHhHh-----hCCcCCCEEECCCCc
Confidence            43221  455666666666665 3443333221     234555555555443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.67  E-value=1.9e-18  Score=177.77  Aligned_cols=189  Identities=15%  Similarity=0.081  Sum_probs=108.4

Q ss_pred             hhhhhccccccccccc-ccccccccccCCcccEEEeccCCCceecCCccccc--ccccccccEEeeeccccccEEEeecc
Q 039042          129 KLEKLELRSINIERIW-RNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVS--NNSFVRLQYIRIEKCHVLEELIVVDN  205 (526)
Q Consensus       129 ~L~~L~L~~~~l~~~~-~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~--l~~l~~L~~L~l~~~~~l~~l~~~~~  205 (526)
                      +|++|++++|.++..- ...+.. +..+++|++|++++|. ++...+..++.  ....++|++|++++| .+......  
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~--  160 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCE--  160 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHH-TTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHH--
T ss_pred             ceeEEEccCCCCCHHHHHHHHHH-HccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHH--
Confidence            6889999998776421 111222 5578899999999876 33222222221  013457999999888 33321100  


Q ss_pred             hhhhcccccccccccceeecccCccccccccCc---ccccCCCCccEEEeccCCCceec-----cccccCCccccccCCc
Q 039042          206 QEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGD---VHMLEFPSLKELWISRCPEFMVR-----FKRTTNDLTKKVFPNL  277 (526)
Q Consensus       206 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~---~~~~~l~~L~~L~l~~c~~l~~~-----~~~~~~~~~~~~l~~L  277 (526)
                         .....+..+++|++|+++++. +.......   ......++|++|++++| .+...     +..+      ..+++|
T Consensus       161 ---~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l------~~~~~L  229 (461)
T 1z7x_W          161 ---PLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIV------ASKASL  229 (461)
T ss_dssp             ---HHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHH------HHCTTC
T ss_pred             ---HHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHH------HhCCCc
Confidence               001112457889999998764 43321110   00113568999999988 44432     2222      357889


Q ss_pred             ceEEEeecccccc-ceeccc---cccccccEEEeeeCCcccccc---cchhHhhcCCCccEEEEe
Q 039042          278 EELIVDAEYIITN-KFIFSE---DLLCKLKCLDVEFVDELTTIL---SLDDFLQRFPTLKVLQIE  335 (526)
Q Consensus       278 ~~L~l~~~~~~~~-~~~~~~---~~~~~L~~L~l~~~~~l~~~~---~~~~~l~~l~~L~~L~l~  335 (526)
                      ++|++++|.+.+. ...+..   ..+++|++|++++|. +++..   ++ ..+..+++|++|+++
T Consensus       230 ~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~-~~l~~~~~L~~L~Ls  292 (461)
T 1z7x_W          230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLC-RVLRAKESLKELSLA  292 (461)
T ss_dssp             CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHH-HHHHHCTTCCEEECT
T ss_pred             cEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHH-HHHhhCCCcceEECC
Confidence            9999997766431 111111   246789999998874 33000   22 245567888888887

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.64  E-value=7.2e-16  Score=159.11  Aligned_cols=237  Identities=12%  Similarity=0.147  Sum_probs=129.5

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      +++|++|+|++|.++.+..   .. +..+++|++|+|++|. ++..+|  +   +.+++|++|++++| .+..++     
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~---~~-~~~l~~L~~L~Ls~N~-l~~~~~--l---~~l~~L~~L~Ls~N-~l~~l~-----   96 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISA---AD-LAPFTKLELLNLSSNV-LYETLD--L---ESLSTLRTLDLNNN-YVQELL-----   96 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCG---GG-GTTCTTCCEEECTTSC-CEEEEE--C---TTCTTCCEEECCSS-EEEEEE-----
T ss_pred             CCCccEEEeeCCcCCCCCH---HH-HhCCCCCCEEEeeCCC-CCCCcc--c---ccCCCCCEEEecCC-cCCCCC-----
Confidence            4456666666665554311   11 3455666666666543 322222  2   25556666666655 343332     


Q ss_pred             hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY  286 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  286 (526)
                               ..++|++|+++++ .+..++..     .+++|+.|++++| .+..+++.                      
T Consensus        97 ---------~~~~L~~L~L~~N-~l~~~~~~-----~l~~L~~L~L~~N-~l~~~~~~----------------------  138 (487)
T 3oja_A           97 ---------VGPSIETLHAANN-NISRVSCS-----RGQGKKNIYLANN-KITMLRDL----------------------  138 (487)
T ss_dssp             ---------ECTTCCEEECCSS-CCCCEEEC-----CCSSCEEEECCSS-CCCSGGGB----------------------
T ss_pred             ---------CCCCcCEEECcCC-cCCCCCcc-----ccCCCCEEECCCC-CCCCCCch----------------------
Confidence                     1345555555553 33443332     3455555555555 33333221                      


Q ss_pred             ccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cCce
Q 039042          287 IITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLK  364 (526)
Q Consensus       287 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~  364 (526)
                              ....+++|+.|++++|....  ..|......+++|+.|+++ +....++..    ..+++|++|+++ +.+.
T Consensus       139 --------~~~~l~~L~~L~Ls~N~l~~--~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~----~~l~~L~~L~Ls~N~l~  204 (487)
T 3oja_A          139 --------DEGCRSRVQYLDLKLNEIDT--VNFAELAASSDTLEHLNLQYNFIYDVKGQ----VVFAKLKTLDLSSNKLA  204 (487)
T ss_dssp             --------CGGGGSSEEEEECTTSCCCE--EEGGGGGGGTTTCCEEECTTSCCCEEECC----CCCTTCCEEECCSSCCC
T ss_pred             --------hhcCCCCCCEEECCCCCCCC--cChHHHhhhCCcccEEecCCCcccccccc----ccCCCCCEEECCCCCCC
Confidence                    11234455555555543322  2233233356667777666 332222221    346788888888 7888


Q ss_pred             eeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEcc
Q 039042          365 YILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIES  434 (526)
Q Consensus       365 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~  434 (526)
                      .+++. +..+++|+.|++++|. +..+|..+..+++|+.|++++++ +.....+.++..++.|+.+++..
T Consensus       205 ~~~~~-~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~-l~c~~~~~~~~~l~~L~~l~~~~  271 (487)
T 3oja_A          205 FMGPE-FQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQT  271 (487)
T ss_dssp             EECGG-GGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC-BCHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCHh-HcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCC-CcCcchHHHHHhCCCCcEEeccc
Confidence            87654 7778899999999874 55677777788899999998874 44222224566677777766653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.64  E-value=8.2e-16  Score=147.42  Aligned_cols=222  Identities=12%  Similarity=-0.003  Sum_probs=129.7

Q ss_pred             cEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccccCc
Q 039042          159 THLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGD  238 (526)
Q Consensus       159 ~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~  238 (526)
                      ++++.++ ..++.+ |..     ..++|++|+++++ .+..++...         +..+++|++|+++++ .+..+....
T Consensus        14 ~~~~c~~-~~l~~i-p~~-----~~~~l~~L~l~~n-~i~~~~~~~---------~~~~~~L~~L~l~~n-~l~~~~~~~   75 (285)
T 1ozn_A           14 VTTSCPQ-QGLQAV-PVG-----IPAASQRIFLHGN-RISHVPAAS---------FRACRNLTILWLHSN-VLARIDAAA   75 (285)
T ss_dssp             CEEECCS-SCCSSC-CTT-----CCTTCSEEECTTS-CCCEECTTT---------TTTCTTCCEEECCSS-CCCEECTTT
T ss_pred             eEEEcCc-CCcccC-CcC-----CCCCceEEEeeCC-cCCccCHHH---------cccCCCCCEEECCCC-ccceeCHhh
Confidence            5666665 345554 543     3468999999888 666665332         257888999999875 556653332


Q ss_pred             ccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCccccccc
Q 039042          239 VHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILS  318 (526)
Q Consensus       239 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  318 (526)
                        +..+++|++|++++|..+..+++..+     ..+++|++|+++++.+.. +..-....+++|++|+++++...   .+
T Consensus        76 --~~~l~~L~~L~l~~n~~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~---~~  144 (285)
T 1ozn_A           76 --FTGLALLEQLDLSDNAQLRSVDPATF-----HGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQ---AL  144 (285)
T ss_dssp             --TTTCTTCCEEECCSCTTCCCCCTTTT-----TTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCC---CC
T ss_pred             --cCCccCCCEEeCCCCCCccccCHHHh-----cCCcCCCEEECCCCcCCE-ECHhHhhCCcCCCEEECCCCccc---cc
Confidence              66788889998888865666644332     357777777777665421 10001223455555555554322   22


Q ss_pred             chhHhhcCCCccEEEEeeccccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCcc
Q 039042          319 LDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTS  397 (526)
Q Consensus       319 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~  397 (526)
                      +...+..+                         ++|++|++. +.+..+++..+..+++|+.|+++++......+..+..
T Consensus       145 ~~~~~~~l-------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  199 (285)
T 1ozn_A          145 PDDTFRDL-------------------------GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD  199 (285)
T ss_dssp             CTTTTTTC-------------------------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             CHhHhccC-------------------------CCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccC
Confidence            22233334                         455555555 5555555555566666777777666433333445556


Q ss_pred             CCCcCEEEEccCCCcccccchHHHhhcccccEEEEcccc
Q 039042          398 FQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCA  436 (526)
Q Consensus       398 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~  436 (526)
                      +++|+.|+++++ .++.++. ..+..+++|+.|++++++
T Consensus       200 l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          200 LGRLMTLYLFAN-NLSALPT-EALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             CTTCCEEECCSS-CCSCCCH-HHHTTCTTCCEEECCSSC
T ss_pred             cccccEeeCCCC-cCCcCCH-HHcccCcccCEEeccCCC
Confidence            667777777665 4555432 345566777777776643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.60  E-value=1.3e-14  Score=135.27  Aligned_cols=196  Identities=12%  Similarity=0.049  Sum_probs=108.8

Q ss_pred             cccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceecccc
Q 039042          185 RLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKR  264 (526)
Q Consensus       185 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~  264 (526)
                      +|++|++++| .+..++...         +..+++|++|+++++..++.++...  +..+++|++|++++|..++.+++.
T Consensus        32 ~l~~L~l~~n-~l~~i~~~~---------~~~l~~L~~L~l~~n~~l~~i~~~~--f~~l~~L~~L~l~~~n~l~~i~~~   99 (239)
T 2xwt_C           32 STQTLKLIET-HLRTIPSHA---------FSNLPNISRIYVSIDVTLQQLESHS--FYNLSKVTHIEIRNTRNLTYIDPD   99 (239)
T ss_dssp             TCCEEEEESC-CCSEECTTT---------TTTCTTCCEEEEECCSSCCEECTTT--EESCTTCCEEEEEEETTCCEECTT
T ss_pred             cccEEEEeCC-cceEECHHH---------ccCCCCCcEEeCCCCCCcceeCHhH--cCCCcCCcEEECCCCCCeeEcCHH
Confidence            6777777776 555554422         1456777777777654355655432  556777777777764466666544


Q ss_pred             ccCCccccccCCcceEEEeeccccccceecc-cccccccc---EEEeeeCCcccccccchhHhhcCCCcc-EEEEeec-c
Q 039042          265 TTNDLTKKVFPNLEELIVDAEYIITNKFIFS-EDLLCKLK---CLDVEFVDELTTILSLDDFLQRFPTLK-VLQIEGY-S  338 (526)
Q Consensus       265 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~---~L~l~~~~~l~~~~~~~~~l~~l~~L~-~L~l~~~-~  338 (526)
                      .+     ..+++|++|++++|.+..    +| ...+++|+   +|+++++..++  .++...+..+++|+ .|+++.+ .
T Consensus       100 ~f-----~~l~~L~~L~l~~n~l~~----lp~~~~l~~L~~L~~L~l~~N~~l~--~i~~~~~~~l~~L~~~L~l~~n~l  168 (239)
T 2xwt_C          100 AL-----KELPLLKFLGIFNTGLKM----FPDLTKVYSTDIFFILEITDNPYMT--SIPVNAFQGLCNETLTLKLYNNGF  168 (239)
T ss_dssp             SE-----ECCTTCCEEEEEEECCCS----CCCCTTCCBCCSEEEEEEESCTTCC--EECTTTTTTTBSSEEEEECCSCCC
T ss_pred             Hh-----CCCCCCCEEeCCCCCCcc----ccccccccccccccEEECCCCcchh--hcCcccccchhcceeEEEcCCCCC
Confidence            32     256777777777665532    22 23345555   77777764555  45555566677777 7766632 3


Q ss_pred             ccccCCCcCccccccceEEEec-c-Cceeecccccccc-CcccEEEEeccCCcccccCCCccCCCcCEEEEccC
Q 039042          339 DWLPKEKVENGMEVIIRRVFRC-Y-DLKYILKQESSIM-NNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYC  409 (526)
Q Consensus       339 ~~~~~~~~~~~~~~~L~~L~l~-~-~l~~~~~~~~~~l-~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c  409 (526)
                      ..++...+  .. ++|++|++. + .+..+++..+..+ ++|+.|+++++ .+..+|..  .+++|+.|++.++
T Consensus       169 ~~i~~~~~--~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          169 TSVQGYAF--NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CEECTTTT--TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECTTC
T ss_pred             cccCHhhc--CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh--HhccCceeeccCc
Confidence            34443332  11 456666665 4 3555555555555 55555555553 23333322  4455555555444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.60  E-value=2.9e-14  Score=140.81  Aligned_cols=122  Identities=13%  Similarity=0.076  Sum_probs=58.0

Q ss_pred             ceEEEec--cCceeeccccccccC-cccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEE
Q 039042          354 IRRVFRC--YDLKYILKQESSIMN-NLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREM  430 (526)
Q Consensus       354 L~~L~l~--~~l~~~~~~~~~~l~-~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L  430 (526)
                      +..+.+.  +.+..++...+..+. .++.|+++++ .+..++......++|+.|.+.++..++.++.. .+..+++|++|
T Consensus       130 l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~-~f~~l~~L~~L  207 (350)
T 4ay9_X          130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPND-VFHGASGPVIL  207 (350)
T ss_dssp             CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTT-TTTTEECCSEE
T ss_pred             hhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHH-HhccCcccchh
Confidence            3444443  344444444443332 3455555543 23344444334445555555555455554421 33455555555


Q ss_pred             EEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEe
Q 039042          431 KIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVD  495 (526)
Q Consensus       431 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~  495 (526)
                      +++++ .++.+|..              .|.+|+.|++.++++++.+|.   +..+++|+.+++.
T Consensus       208 dLs~N-~l~~lp~~--------------~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~  254 (350)
T 4ay9_X          208 DISRT-RIHSLPSY--------------GLENLKKLRARSTYNLKKLPT---LEKLVALMEASLT  254 (350)
T ss_dssp             ECTTS-CCCCCCSS--------------SCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECS
T ss_pred             hcCCC-CcCccChh--------------hhccchHhhhccCCCcCcCCC---chhCcChhhCcCC
Confidence            55553 34444432              245555555555555555553   2345555555553

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.57  E-value=6.1e-14  Score=138.45  Aligned_cols=240  Identities=14%  Similarity=0.076  Sum_probs=158.3

Q ss_pred             ceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccc
Q 039042          221 QYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLC  300 (526)
Q Consensus       221 ~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  300 (526)
                      +.++.++ .+++++|..   +  .+++++|+++++ +++.++...+     ..+++|++|++++|.+...+..-....++
T Consensus        12 ~~v~C~~-~~Lt~iP~~---l--~~~l~~L~Ls~N-~i~~i~~~~f-----~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~   79 (350)
T 4ay9_X           12 RVFLCQE-SKVTEIPSD---L--PRNAIELRFVLT-KLRVIQKGAF-----SGFGDLEKIEISQNDVLEVIEADVFSNLP   79 (350)
T ss_dssp             TEEEEES-TTCCSCCTT---C--CTTCSEEEEESC-CCSEECTTSS-----TTCTTCCEEEEECCTTCCEECTTSBCSCT
T ss_pred             CEEEecC-CCCCccCcC---c--CCCCCEEEccCC-cCCCcCHHHH-----cCCCCCCEEECcCCCCCCccChhHhhcch
Confidence            4444443 356666655   2  457788888777 5677766433     25677777777766543211111112333


Q ss_pred             cccEEEeeeCCcccccccchhHhhcCCCccEEEEeeccccccCCCcCccccccceEEEec-cCceeeccccccccCcccE
Q 039042          301 KLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVI  379 (526)
Q Consensus       301 ~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~  379 (526)
                      ++.++.+..++.++  .++...+.                         .+++|++|++. +.+..+++..+....++..
T Consensus        80 ~l~~~l~~~~N~l~--~l~~~~f~-------------------------~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~  132 (350)
T 4ay9_X           80 KLHEIRIEKANNLL--YINPEAFQ-------------------------NLPNLQYLLISNTGIKHLPDVHKIHSLQKVL  132 (350)
T ss_dssp             TCCEEEEEEETTCC--EECTTSBC-------------------------CCTTCCEEEEEEECCSSCCCCTTCCBSSCEE
T ss_pred             hhhhhhcccCCccc--ccCchhhh-------------------------hccccccccccccccccCCchhhcccchhhh
Confidence            44444333333333  23333333                         44555555555 5555555555556678899


Q ss_pred             EEEeccCCcccccCC-Ccc-CCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCe
Q 039042          380 LHVTNCHRLINLVPS-STS-FQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEV  457 (526)
Q Consensus       380 L~l~~c~~l~~l~~~-~~~-~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~  457 (526)
                      |++.++..+..++.. +.. ...++.|+++++ +++.++.  .+...++|+++++.+++.++.++...           +
T Consensus       133 l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~--~~f~~~~L~~l~l~~~n~l~~i~~~~-----------f  198 (350)
T 4ay9_X          133 LDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHN--SAFNGTQLDELNLSDNNNLEELPNDV-----------F  198 (350)
T ss_dssp             EEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECT--TSSTTEEEEEEECTTCTTCCCCCTTT-----------T
T ss_pred             hhhccccccccccccchhhcchhhhhhccccc-cccCCCh--hhccccchhHHhhccCCcccCCCHHH-----------h
Confidence            999998888877653 233 346889999886 6887763  33355789999999888899887642           2


Q ss_pred             eeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCccccCCCCCCCcccceEEec
Q 039042          458 IAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTPVLHKVQLN  519 (526)
Q Consensus       458 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~~L~~l~l~  519 (526)
                      ..+++|+.|++++ +.++.+|...    +.+|++|.+.+|.+++.+|. ...+++|+.+++.
T Consensus       199 ~~l~~L~~LdLs~-N~l~~lp~~~----~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~  254 (350)
T 4ay9_X          199 HGASGPVILDISR-TRIHSLPSYG----LENLKKLRARSTYNLKKLPT-LEKLVALMEASLT  254 (350)
T ss_dssp             TTEECCSEEECTT-SCCCCCCSSS----CTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred             ccCcccchhhcCC-CCcCccChhh----hccchHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence            3679999999998 4799998764    78999999999999999985 4558999999886

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.57  E-value=9.3e-16  Score=149.04  Aligned_cols=227  Identities=16%  Similarity=0.130  Sum_probs=121.8

Q ss_pred             hhhhhhcccccccccccccccccccc-------cCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEE
Q 039042          128 EKLEKLELRSINIERIWRNQVAAMTC-------GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEEL  200 (526)
Q Consensus       128 ~~L~~L~L~~~~l~~~~~~~~~~~~~-------~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l  200 (526)
                      ..|+.|++++|.++..-.  +.. +.       .+++|++|++++|.. +...|..+. ++.+++|++|++++| .+..+
T Consensus        63 ~~L~~L~L~~n~l~~~~~--~~~-~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~  136 (312)
T 1wwl_A           63 DIIKSLSLKRLTVRAARI--PSR-ILFGALRVLGISGLQELTLENLEV-TGTAPPPLL-EATGPDLNILNLRNV-SWATR  136 (312)
T ss_dssp             HHHHHCCCCEEEEEEEEC--BHH-HHHHHHHHHTTSCCCEEEEEEEBC-BSCCCCCSS-SCCSCCCSEEEEESC-BCSSS
T ss_pred             HHHhhcccccccccCCCc--CHH-HHHHHHHhcCcCCccEEEccCCcc-cchhHHHHH-HhcCCCccEEEccCC-CCcch
Confidence            348888888887653211  211 22       478888888888753 333455542 137888888888887 45444


Q ss_pred             Eeecchhhhcccccccc-----cccceeecccCccccccccCcccccCCCCccEEEeccCCCcee--ccccccCCccccc
Q 039042          201 IVVDNQEEERKNNIVMF-----PQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMV--RFKRTTNDLTKKV  273 (526)
Q Consensus       201 ~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--~~~~~~~~~~~~~  273 (526)
                      +..+          ..+     ++|++|+++++ .+..++...  +..+++|++|++++|.-...  ++....-    ..
T Consensus       137 ~~~~----------~~l~~~~~~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~----~~  199 (312)
T 1wwl_A          137 DAWL----------AELQQWLKPGLKVLSIAQA-HSLNFSCEQ--VRVFPALSTLDLSDNPELGERGLISALCP----LK  199 (312)
T ss_dssp             SSHH----------HHHHTTCCTTCCEEEEESC-SCCCCCTTT--CCCCSSCCEEECCSCTTCHHHHHHHHSCT----TS
T ss_pred             hHHH----------HHHHHhhcCCCcEEEeeCC-CCccchHHH--hccCCCCCEEECCCCCcCcchHHHHHHHh----cc
Confidence            3222          223     77788887764 455554332  66677777777777742211  1111100    24


Q ss_pred             cCCcceEEEeeccccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-ec-cccccCCCcCcccc
Q 039042          274 FPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GY-SDWLPKEKVENGME  351 (526)
Q Consensus       274 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~-~~~~~~~~~~~~~~  351 (526)
                      +++|++|++++|.+.. +.                        .++...+..+++|++|+++ +. ....+...+  ..+
T Consensus       200 l~~L~~L~L~~N~l~~-~~------------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~l  252 (312)
T 1wwl_A          200 FPTLQVLALRNAGMET-PS------------------------GVCSALAAARVQLQGLDLSHNSLRDAAGAPSC--DWP  252 (312)
T ss_dssp             CTTCCEEECTTSCCCC-HH------------------------HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC--CCC
T ss_pred             CCCCCEEECCCCcCcc-hH------------------------HHHHHHHhcCCCCCEEECCCCcCCcccchhhh--hhc
Confidence            5556666665544321 00                        1122233445555555555 22 111111111  334


Q ss_pred             ccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccC
Q 039042          352 VIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYC  409 (526)
Q Consensus       352 ~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c  409 (526)
                      ++|++|+++ +.+..++....   ++|++|+++++ .+..+|. +..+++|++|++++.
T Consensus       253 ~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          253 SQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGN  306 (312)
T ss_dssp             TTCCEEECTTSCCSSCCSSCC---SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTC
T ss_pred             CCCCEEECCCCccChhhhhcc---CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCC
Confidence            566666666 66665543222   67777777766 3444443 666777777777665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.57  E-value=3.9e-15  Score=153.59  Aligned_cols=243  Identities=13%  Similarity=0.072  Sum_probs=147.4

Q ss_pred             hHHHHHhccccccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhcc
Q 039042           40 KDWLILQLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILED  117 (526)
Q Consensus        40 ~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~  117 (526)
                      ...+........+|+.++++++.+..++.. ....+++|++|+|++|.....++  +..+++|++  ++++. +..++  
T Consensus        23 ~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~--   96 (487)
T 3oja_A           23 KQALASLRQSAWNVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELL--   96 (487)
T ss_dssp             HHHHHTTSTTGGGCCEEECCSSCCCCCCGG-GGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEE--
T ss_pred             HHHHHHhcccCCCccEEEeeCCcCCCCCHH-HHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCC--
Confidence            444555555566888888888877776532 34578889999998887654433  567777777  55442 22222  


Q ss_pred             cccccchhhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccc
Q 039042          118 NANISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVL  197 (526)
Q Consensus       118 ~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l  197 (526)
                              ..++|++|++++|.++.+    +..   .+++|++|++++|. ++.+.|..++   .+++|++|++++| .+
T Consensus        97 --------~~~~L~~L~L~~N~l~~~----~~~---~l~~L~~L~L~~N~-l~~~~~~~~~---~l~~L~~L~Ls~N-~l  156 (487)
T 3oja_A           97 --------VGPSIETLHAANNNISRV----SCS---RGQGKKNIYLANNK-ITMLRDLDEG---CRSRVQYLDLKLN-EI  156 (487)
T ss_dssp             --------ECTTCCEEECCSSCCCCE----EEC---CCSSCEEEECCSSC-CCSGGGBCGG---GGSSEEEEECTTS-CC
T ss_pred             --------CCCCcCEEECcCCcCCCC----Ccc---ccCCCCEEECCCCC-CCCCCchhhc---CCCCCCEEECCCC-CC
Confidence                    146777788877776654    212   46778888887764 4444454444   6777888888777 44


Q ss_pred             cEEEeecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCc
Q 039042          198 EELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNL  277 (526)
Q Consensus       198 ~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L  277 (526)
                      ..++.....        ..+++|++|+++++ .+..++..    ..+++|+.|++++| .+..+++.+      ..+++|
T Consensus       157 ~~~~~~~l~--------~~l~~L~~L~Ls~N-~l~~~~~~----~~l~~L~~L~Ls~N-~l~~~~~~~------~~l~~L  216 (487)
T 3oja_A          157 DTVNFAELA--------ASSDTLEHLNLQYN-FIYDVKGQ----VVFAKLKTLDLSSN-KLAFMGPEF------QSAAGV  216 (487)
T ss_dssp             CEEEGGGGG--------GGTTTCCEEECTTS-CCCEEECC----CCCTTCCEEECCSS-CCCEECGGG------GGGTTC
T ss_pred             CCcChHHHh--------hhCCcccEEecCCC-cccccccc----ccCCCCCEEECCCC-CCCCCCHhH------cCCCCc
Confidence            443322111        25677888888774 45555333    25777888888777 566666654      357777


Q ss_pred             ceEEEeeccccccceeccc--cccccccEEEeeeCCcccccccchhHhhcCCCccEEEE
Q 039042          278 EELIVDAEYIITNKFIFSE--DLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQI  334 (526)
Q Consensus       278 ~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l  334 (526)
                      +.|++++|.+..    +|.  ..+++|+.|++++|+...  ......+..++.|+.+.+
T Consensus       217 ~~L~Ls~N~l~~----lp~~l~~l~~L~~L~l~~N~l~c--~~~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          217 TWISLRNNKLVL----IEKALRFSQNLEHFDLRGNGFHC--GTLRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             SEEECTTSCCCE----ECTTCCCCTTCCEEECTTCCBCH--HHHHHHHTTCHHHHHHHH
T ss_pred             cEEEecCCcCcc----cchhhccCCCCCEEEcCCCCCcC--cchHHHHHhCCCCcEEec
Confidence            887777665532    332  245677777777766542  111223444555554444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.56  E-value=2e-15  Score=146.62  Aligned_cols=152  Identities=16%  Similarity=0.146  Sum_probs=96.2

Q ss_pred             CCcceEEEeeccccccceeccccccccccEEEeeeCCcccccccch-hHhhcCCCccEEEEe-ecccc---ccCCCcCcc
Q 039042          275 PNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLD-DFLQRFPTLKVLQIE-GYSDW---LPKEKVENG  349 (526)
Q Consensus       275 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~l~~l~~L~~L~l~-~~~~~---~~~~~~~~~  349 (526)
                      ++|++|++++|.+.. +..-....+++|++|++++|.......++. ..+..+++|++|+++ +....   ++...  ..
T Consensus       149 ~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--~~  225 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLN-FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL--AA  225 (312)
T ss_dssp             TTCCEEEEESCSCCC-CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH--HH
T ss_pred             CCCcEEEeeCCCCcc-chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH--Hh
Confidence            556666666554421 110112245566666666655332000111 112567788888887 33221   11111  03


Q ss_pred             ccccceEEEec-cCceeecc-ccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccc
Q 039042          350 MEVIIRRVFRC-YDLKYILK-QESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRL  427 (526)
Q Consensus       350 ~~~~L~~L~l~-~~l~~~~~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L  427 (526)
                      .+++|++|+++ +.+....+ ..+..+++|+.|++++|. +..+|..+.  ++|++|+++++ +++.++.   +..+++|
T Consensus       226 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~---~~~l~~L  298 (312)
T 1wwl_A          226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYN-RLDRNPS---PDELPQV  298 (312)
T ss_dssp             TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSS-CCCSCCC---TTTSCEE
T ss_pred             cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCC-CCCCChh---HhhCCCC
Confidence            45899999999 88887653 456668999999999985 457766554  89999999987 6887752   6788999


Q ss_pred             cEEEEcccc
Q 039042          428 REMKIESCA  436 (526)
Q Consensus       428 ~~L~i~~c~  436 (526)
                      ++|++++++
T Consensus       299 ~~L~L~~N~  307 (312)
T 1wwl_A          299 GNLSLKGNP  307 (312)
T ss_dssp             EEEECTTCT
T ss_pred             CEEeccCCC
Confidence            999999854

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.54  E-value=8.3e-14  Score=129.68  Aligned_cols=102  Identities=17%  Similarity=0.188  Sum_probs=50.2

Q ss_pred             EEEEeccCCcccccCC-CccCCCcC-EEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCC
Q 039042          379 ILHVTNCHRLINLVPS-STSFQNLT-SLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDE  456 (526)
Q Consensus       379 ~L~l~~c~~l~~l~~~-~~~~~~L~-~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~  456 (526)
                      .|+++++..+..++.. +..+++|+ .|+++++ +++.++.. .... ++|++|+++++..++.++...           
T Consensus       134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~-~~~~-~~L~~L~L~~n~~l~~i~~~~-----------  199 (239)
T 2xwt_C          134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGY-AFNG-TKLDAVYLNKNKYLTVIDKDA-----------  199 (239)
T ss_dssp             EEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTT-TTTT-CEEEEEECTTCTTCCEECTTT-----------
T ss_pred             EEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHh-hcCC-CCCCEEEcCCCCCcccCCHHH-----------
Confidence            5555554344444332 34455555 5555544 34444322 1122 566666666653455544321           


Q ss_pred             eeee-CccCeEecCCCccccccCCCCccccCCCccEEeEecCCC
Q 039042          457 VIAF-SELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTN  499 (526)
Q Consensus       457 ~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~  499 (526)
                      +..+ ++|+.|++++ +.++.+|..    .+++|+.|++.++..
T Consensus       200 ~~~l~~~L~~L~l~~-N~l~~l~~~----~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          200 FGGVYSGPSLLDVSQ-TSVTALPSK----GLEHLKELIARNTWT  238 (239)
T ss_dssp             TTTCSBCCSEEECTT-CCCCCCCCT----TCTTCSEEECTTC--
T ss_pred             hhccccCCcEEECCC-CccccCChh----HhccCceeeccCccC
Confidence            1234 6666666665 455566554    356667766666543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.50  E-value=1.8e-13  Score=131.23  Aligned_cols=199  Identities=14%  Similarity=0.084  Sum_probs=119.7

Q ss_pred             cccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccc
Q 039042          152 TCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKL  231 (526)
Q Consensus       152 ~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l  231 (526)
                      +.++++++++++.++ .++.+ |..+     .++++.|++++| .+..++...         +..+++|++|+++++ .+
T Consensus         6 ~~~l~~l~~l~~~~~-~l~~i-p~~~-----~~~l~~L~L~~N-~l~~~~~~~---------~~~l~~L~~L~L~~n-~l   67 (290)
T 1p9a_G            6 VSKVASHLEVNCDKR-NLTAL-PPDL-----PKDTTILHLSEN-LLYTFSLAT---------LMPYTRLTQLNLDRA-EL   67 (290)
T ss_dssp             EECSTTCCEEECTTS-CCSSC-CSCC-----CTTCCEEECTTS-CCSEEEGGG---------GTTCTTCCEEECTTS-CC
T ss_pred             ccccCCccEEECCCC-CCCcC-CCCC-----CCCCCEEEcCCC-cCCccCHHH---------hhcCCCCCEEECCCC-cc
Confidence            447788888888875 45555 5433     357888888888 555554322         156788888888874 45


Q ss_pred             cccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCC
Q 039042          232 TSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVD  311 (526)
Q Consensus       232 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  311 (526)
                      ..++..    ..+++|++|+++++ .+..++..+      ..+++|+.|++++|.+.    .+                 
T Consensus        68 ~~~~~~----~~l~~L~~L~Ls~N-~l~~l~~~~------~~l~~L~~L~l~~N~l~----~l-----------------  115 (290)
T 1p9a_G           68 TKLQVD----GTLPVLGTLDLSHN-QLQSLPLLG------QTLPALTVLDVSFNRLT----SL-----------------  115 (290)
T ss_dssp             CEEECC----SCCTTCCEEECCSS-CCSSCCCCT------TTCTTCCEEECCSSCCC----CC-----------------
T ss_pred             CcccCC----CCCCcCCEEECCCC-cCCcCchhh------ccCCCCCEEECCCCcCc----cc-----------------
Confidence            555433    36778888888877 556555443      34666777766655442    12                 


Q ss_pred             cccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcc
Q 039042          312 ELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLI  389 (526)
Q Consensus       312 ~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~  389 (526)
                             +...+..+++|++|+++.+ ...++...+  ..+++|+.|++. +.+..+++..+..+++|+.|+++++ .+.
T Consensus       116 -------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~  185 (290)
T 1p9a_G          116 -------PLGALRGLGELQELYLKGNELKTLPPGLL--TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLY  185 (290)
T ss_dssp             -------CSSTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred             -------CHHHHcCCCCCCEEECCCCCCCccChhhc--ccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCC-cCC
Confidence                   2223334444444444422 222222222  344566666666 6666666666666777777777776 345


Q ss_pred             cccCCCccCCCcCEEEEccCC
Q 039042          390 NLVPSSTSFQNLTSLEISYCN  410 (526)
Q Consensus       390 ~l~~~~~~~~~L~~L~l~~c~  410 (526)
                      .+|..+...++|+.|++++.+
T Consensus       186 ~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          186 TIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CCCTTTTTTCCCSEEECCSCC
T ss_pred             ccChhhcccccCCeEEeCCCC
Confidence            666666666777777777643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.49  E-value=7.4e-14  Score=133.92  Aligned_cols=200  Identities=14%  Similarity=0.086  Sum_probs=123.8

Q ss_pred             ccccccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccccccchhh
Q 039042           47 LQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLF  126 (526)
Q Consensus        47 l~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~  126 (526)
                      ++.+.+++.++++..++..+|..+    .+++++|++++|.....+...+.+                            
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~----~~~l~~L~L~~N~l~~~~~~~~~~----------------------------   53 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL----PKDTTILHLSENLLYTFSLATLMP----------------------------   53 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC----CTTCCEEECTTSCCSEEEGGGGTT----------------------------
T ss_pred             ccccCCccEEECCCCCCCcCCCCC----CCCCCEEEcCCCcCCccCHHHhhc----------------------------
Confidence            456667788888887887777642    478999999988765444333433                            


Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      +++|++|++++|.++.+..      ...+++|++|++++|. ++.+ |..+.   .+++|++|++++| .+..++...  
T Consensus        54 l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~Ls~N~-l~~l-~~~~~---~l~~L~~L~l~~N-~l~~l~~~~--  119 (290)
T 1p9a_G           54 YTRLTQLNLDRAELTKLQV------DGTLPVLGTLDLSHNQ-LQSL-PLLGQ---TLPALTVLDVSFN-RLTSLPLGA--  119 (290)
T ss_dssp             CTTCCEEECTTSCCCEEEC------CSCCTTCCEEECCSSC-CSSC-CCCTT---TCTTCCEEECCSS-CCCCCCSST--
T ss_pred             CCCCCEEECCCCccCcccC------CCCCCcCCEEECCCCc-CCcC-chhhc---cCCCCCEEECCCC-cCcccCHHH--
Confidence            5667777777776665422      1256777777777753 3333 44433   5777777777776 455544321  


Q ss_pred             hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY  286 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  286 (526)
                             +..+++|++|+++++ .+..++...  +..+++|+.|+++++ +++.++...+.     .+++|+.|++++|.
T Consensus       120 -------~~~l~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~l~~~~~~-----~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          120 -------LRGLGELQELYLKGN-ELKTLPPGL--LTPTPKLEKLSLANN-NLTELPAGLLN-----GLENLDTLLLQENS  183 (290)
T ss_dssp             -------TTTCTTCCEEECTTS-CCCCCCTTT--TTTCTTCCEEECTTS-CCSCCCTTTTT-----TCTTCCEEECCSSC
T ss_pred             -------HcCCCCCCEEECCCC-CCCccChhh--cccccCCCEEECCCC-cCCccCHHHhc-----CcCCCCEEECCCCc
Confidence                   145677777777764 455555442  456777777777776 56666654432     56777777777665


Q ss_pred             ccccceecccc--ccccccEEEeeeCCc
Q 039042          287 IITNKFIFSED--LLCKLKCLDVEFVDE  312 (526)
Q Consensus       287 ~~~~~~~~~~~--~~~~L~~L~l~~~~~  312 (526)
                      +.    .+|..  ..++|+.+++++++.
T Consensus       184 l~----~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          184 LY----TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CC----CCCTTTTTTCCCSEEECCSCCB
T ss_pred             CC----ccChhhcccccCCeEEeCCCCc
Confidence            53    23433  334677777776553

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.49  E-value=7.8e-14  Score=132.56  Aligned_cols=211  Identities=13%  Similarity=0.155  Sum_probs=126.9

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      +.++..+++.++.+.+...      ...+++|+.|.+.+|. ++.+ + .   ++.+++|++|++++| .+..++ .   
T Consensus        18 ~~~l~~l~l~~~~~~~~~~------~~~l~~L~~L~l~~~~-i~~~-~-~---l~~l~~L~~L~l~~n-~l~~~~-~---   80 (272)
T 3rfs_A           18 FAETIKANLKKKSVTDAVT------QNELNSIDQIIANNSD-IKSV-Q-G---IQYLPNVRYLALGGN-KLHDIS-A---   80 (272)
T ss_dssp             HHHHHHHHHTCSCTTSEEC------HHHHTTCCEEECTTSC-CCCC-T-T---GGGCTTCCEEECTTS-CCCCCG-G---
T ss_pred             HHHHHHHHhcCcccccccc------cccccceeeeeeCCCC-cccc-c-c---cccCCCCcEEECCCC-CCCCch-h---
Confidence            6777788887776654411      3368888888888864 4433 3 2   337888888888887 454432 1   


Q ss_pred             hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY  286 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  286 (526)
                             +..+++|++|+++++ .+..++...  +..+++|++|++++| .+..+++..+     ..+++|++|++++|.
T Consensus        81 -------l~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~~~~-----~~l~~L~~L~L~~n~  144 (272)
T 3rfs_A           81 -------LKELTNLTYLILTGN-QLQSLPNGV--FDKLTNLKELVLVEN-QLQSLPDGVF-----DKLTNLTYLNLAHNQ  144 (272)
T ss_dssp             -------GTTCTTCCEEECTTS-CCCCCCTTT--TTTCTTCCEEECTTS-CCCCCCTTTT-----TTCTTCCEEECCSSC
T ss_pred             -------hcCCCCCCEEECCCC-ccCccChhH--hcCCcCCCEEECCCC-cCCccCHHHh-----ccCCCCCEEECCCCc
Confidence                   257888888888875 566665442  567888888888887 5666655432     256777777777665


Q ss_pred             ccccceeccc---cccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeeccccccCCCcCccccccceEEEec-cC
Q 039042          287 IITNKFIFSE---DLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVFRC-YD  362 (526)
Q Consensus       287 ~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~-~~  362 (526)
                      +.    .++.   ..+++|++|++++|.. +  .++...+..++                         +|++|++. +.
T Consensus       145 l~----~~~~~~~~~l~~L~~L~l~~n~l-~--~~~~~~~~~l~-------------------------~L~~L~L~~N~  192 (272)
T 3rfs_A          145 LQ----SLPKGVFDKLTNLTELDLSYNQL-Q--SLPEGVFDKLT-------------------------QLKDLRLYQNQ  192 (272)
T ss_dssp             CC----CCCTTTTTTCTTCCEEECCSSCC-C--CCCTTTTTTCT-------------------------TCCEEECCSSC
T ss_pred             cC----ccCHHHhccCccCCEEECCCCCc-C--ccCHHHhcCCc-------------------------cCCEEECCCCc
Confidence            52    1221   2345566666665532 2  23332334444                         44455554 45


Q ss_pred             ceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccC
Q 039042          363 LKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYC  409 (526)
Q Consensus       363 l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c  409 (526)
                      +..+++..+..+++|+.|++++++-.       ..+++|+.|+++.+
T Consensus       193 l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n  232 (272)
T 3rfs_A          193 LKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWIN  232 (272)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHH
T ss_pred             CCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHH
Confidence            55555555666677777777766322       23445555555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.49  E-value=4.1e-13  Score=127.44  Aligned_cols=106  Identities=19%  Similarity=0.236  Sum_probs=65.6

Q ss_pred             CcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccc
Q 039042          156 QNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFC  235 (526)
Q Consensus       156 ~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~  235 (526)
                      .+.++++++++ .++.+ |..+.     +++++|++++| .+..++...         +..+++|++|+++++ .+..++
T Consensus        16 ~~~~~l~~~~~-~l~~i-p~~~~-----~~l~~L~l~~n-~l~~~~~~~---------~~~l~~L~~L~l~~n-~l~~i~   77 (270)
T 2o6q_A           16 NNKNSVDCSSK-KLTAI-PSNIP-----ADTKKLDLQSN-KLSSLPSKA---------FHRLTKLRLLYLNDN-KLQTLP   77 (270)
T ss_dssp             TTTTEEECTTS-CCSSC-CSCCC-----TTCSEEECCSS-CCSCCCTTS---------SSSCTTCCEEECCSS-CCSCCC
T ss_pred             CCCCEEEccCC-CCCcc-CCCCC-----CCCCEEECcCC-CCCeeCHHH---------hcCCCCCCEEECCCC-ccCeeC
Confidence            45778888875 45554 54332     46888888887 455554321         256788888888764 556665


Q ss_pred             cCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccc
Q 039042          236 TGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYI  287 (526)
Q Consensus       236 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  287 (526)
                      ...  +..+++|++|+++++ .+..++...+     ..+++|++|+++++.+
T Consensus        78 ~~~--~~~l~~L~~L~l~~n-~l~~~~~~~~-----~~l~~L~~L~l~~n~l  121 (270)
T 2o6q_A           78 AGI--FKELKNLETLWVTDN-KLQALPIGVF-----DQLVNLAELRLDRNQL  121 (270)
T ss_dssp             TTT--TSSCTTCCEEECCSS-CCCCCCTTTT-----TTCSSCCEEECCSSCC
T ss_pred             hhh--hcCCCCCCEEECCCC-cCCcCCHhHc-----ccccCCCEEECCCCcc
Confidence            542  456778888888777 4555554432     2466666666665544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.48  E-value=4.5e-13  Score=127.59  Aligned_cols=201  Identities=15%  Similarity=0.086  Sum_probs=131.8

Q ss_pred             cCCcceEEEeeccccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccc
Q 039042          274 FPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEV  352 (526)
Q Consensus       274 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~  352 (526)
                      .++|++|+++++.+.. +.......+++|++|++++|. ++  .++...+..+++|++|+++ +....++...+  ..++
T Consensus        27 ~~~l~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~-l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~  100 (276)
T 2z62_A           27 PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCE-IQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLS  100 (276)
T ss_dssp             CTTCCEEECTTCCCCE-ECTTTTTTCTTCSEEECTTCC-CC--EECTTTTTTCTTCCEEECTTCCCCEECTTTT--TTCT
T ss_pred             CCCccEEECCCCcccc-cCHhHhccccCCcEEECCCCc-CC--ccCHHHccCCcCCCEEECCCCccCccChhhh--cCCc
Confidence            3578899988776632 111123356788888888874 33  3455567778888888888 33433443333  5678


Q ss_pred             cceEEEec-cCceeeccccccccCcccEEEEeccCCcc-cccCCCccCCCcCEEEEccCCCcccccchHHHhhccccc--
Q 039042          353 IIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLI-NLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLR--  428 (526)
Q Consensus       353 ~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~--  428 (526)
                      +|++|++. +.+..+....+..+++|++|+++++.... .+|..+..+++|++|+++++ +++.++. ..+..+++|+  
T Consensus       101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~l  178 (276)
T 2z62_A          101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYC-TDLRVLHQMPLL  178 (276)
T ss_dssp             TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECG-GGGHHHHTCTTC
T ss_pred             cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCH-HHhhhhhhcccc
Confidence            88888888 77777776677788888888888775433 24556677788888888877 5665542 2334445555  


Q ss_pred             --EEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecC
Q 039042          429 --EMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDC  497 (526)
Q Consensus       429 --~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C  497 (526)
                        +|+++++ .+..++....            ...+|++|+++++ .++.++... +..+++|++|+++++
T Consensus       179 ~l~L~ls~n-~l~~~~~~~~------------~~~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          179 NLSLDLSLN-PMNFIQPGAF------------KEIRLKELALDTN-QLKSVPDGI-FDRLTSLQKIWLHTN  234 (276)
T ss_dssp             CEEEECCSS-CCCEECTTSS------------CSCCEEEEECCSS-CCSCCCTTT-TTTCCSCCEEECCSS
T ss_pred             ceeeecCCC-cccccCcccc------------CCCcccEEECCCC-ceeecCHhH-hcccccccEEEccCC
Confidence              7777774 4555544321            2347888888874 477776653 566788888888864

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.48  E-value=4.9e-13  Score=127.35  Aligned_cols=32  Identities=13%  Similarity=0.112  Sum_probs=14.9

Q ss_pred             cccEEEEeccCCcccccCC-CccCCCcCEEEEcc
Q 039042          376 NLVILHVTNCHRLINLVPS-STSFQNLTSLEISY  408 (526)
Q Consensus       376 ~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~  408 (526)
                      +|+.|+++++. +..++.. +..+++|+.|++++
T Consensus       201 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~  233 (276)
T 2z62_A          201 RLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHT  233 (276)
T ss_dssp             CEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCS
T ss_pred             cccEEECCCCc-eeecCHhHhcccccccEEEccC
Confidence            45555555443 3333332 23455555555554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.47  E-value=4.8e-13  Score=126.94  Aligned_cols=198  Identities=15%  Similarity=0.095  Sum_probs=115.7

Q ss_pred             CCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCcccccccchhHhh
Q 039042          245 PSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQ  324 (526)
Q Consensus       245 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~  324 (526)
                      .+.+.+++++. .++.+|..+        .+++++|+++++.+.. +..-....+++|++|+++++. ++  .++...+.
T Consensus        16 ~~~~~l~~~~~-~l~~ip~~~--------~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~-l~--~i~~~~~~   82 (270)
T 2o6q_A           16 NNKNSVDCSSK-KLTAIPSNI--------PADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNK-LQ--TLPAGIFK   82 (270)
T ss_dssp             TTTTEEECTTS-CCSSCCSCC--------CTTCSEEECCSSCCSC-CCTTSSSSCTTCCEEECCSSC-CS--CCCTTTTS
T ss_pred             CCCCEEEccCC-CCCccCCCC--------CCCCCEEECcCCCCCe-eCHHHhcCCCCCCEEECCCCc-cC--eeChhhhc
Confidence            35677887766 566666442        3578888888766532 111112356778888887754 33  35555566


Q ss_pred             cCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCC-CccCCCc
Q 039042          325 RFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPS-STSFQNL  401 (526)
Q Consensus       325 ~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~~L  401 (526)
                      .+++|++|+++.+ ...++...+  ..+++|++|++. +.+..+++..+..+++|++|+++++. +..++.. +..+++|
T Consensus        83 ~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L  159 (270)
T 2o6q_A           83 ELKNLETLWVTDNKLQALPIGVF--DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSL  159 (270)
T ss_dssp             SCTTCCEEECCSSCCCCCCTTTT--TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred             CCCCCCEEECCCCcCCcCCHhHc--ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCccc
Confidence            7777777777733 333333332  455677777777 66666666666667777777777663 3344332 4556677


Q ss_pred             CEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCc
Q 039042          402 TSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLK  472 (526)
Q Consensus       402 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  472 (526)
                      ++|+++++ .++.++. ..+..+++|++|+++++ .+..++..           .+..+++|+.|++.+++
T Consensus       160 ~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~-----------~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          160 KELRLYNN-QLKRVPE-GAFDKLTELKTLKLDNN-QLKRVPEG-----------AFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSS-CCSCCCTT-----------TTTTCTTCCEEECCSSC
T ss_pred             ceeEecCC-cCcEeCh-hHhccCCCcCEEECCCC-cCCcCCHH-----------HhccccCCCEEEecCCC
Confidence            77777665 4555442 23445666777777664 34444332           12235666677666643

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.44  E-value=6.6e-13  Score=128.51  Aligned_cols=143  Identities=14%  Similarity=0.148  Sum_probs=72.1

Q ss_pred             cCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccc
Q 039042          154 GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTS  233 (526)
Q Consensus       154 ~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~  233 (526)
                      .+++|++|++++|. ++.+ | .   ++.+++|++|++++| .+..++. +          ..+++|++|+++++ .++.
T Consensus        39 ~l~~L~~L~l~~~~-i~~l-~-~---~~~l~~L~~L~L~~n-~i~~~~~-~----------~~l~~L~~L~L~~n-~l~~   99 (308)
T 1h6u_A           39 DLDGITTLSAFGTG-VTTI-E-G---VQYLNNLIGLELKDN-QITDLAP-L----------KNLTKITELELSGN-PLKN   99 (308)
T ss_dssp             HHHTCCEEECTTSC-CCCC-T-T---GGGCTTCCEEECCSS-CCCCCGG-G----------TTCCSCCEEECCSC-CCSC
T ss_pred             HcCCcCEEEeeCCC-ccCc-h-h---hhccCCCCEEEccCC-cCCCChh-H----------ccCCCCCEEEccCC-cCCC
Confidence            45666666666653 3332 3 2   225666666666665 4443332 1          45666666666654 3444


Q ss_pred             cccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCcc
Q 039042          234 FCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDEL  313 (526)
Q Consensus       234 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  313 (526)
                      ++ .   +..+++|++|++++| .+..++. +      ..+++|++|++++|.+.. +  .+...+++|++|++++|.. 
T Consensus       100 ~~-~---~~~l~~L~~L~l~~n-~l~~~~~-l------~~l~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~l~~n~l-  163 (308)
T 1h6u_A          100 VS-A---IAGLQSIKTLDLTST-QITDVTP-L------AGLSNLQVLYLDLNQITN-I--SPLAGLTNLQYLSIGNAQV-  163 (308)
T ss_dssp             CG-G---GTTCTTCCEEECTTS-CCCCCGG-G------TTCTTCCEEECCSSCCCC-C--GGGGGCTTCCEEECCSSCC-
T ss_pred             ch-h---hcCCCCCCEEECCCC-CCCCchh-h------cCCCCCCEEECCCCccCc-C--ccccCCCCccEEEccCCcC-
Confidence            42 1   445666666666666 3444432 1      345666666666554421 1  1133455566666655532 


Q ss_pred             cccccchhHhhcCCCccEEEEe
Q 039042          314 TTILSLDDFLQRFPTLKVLQIE  335 (526)
Q Consensus       314 ~~~~~~~~~l~~l~~L~~L~l~  335 (526)
                      +  .++.  +..+++|+.|+++
T Consensus       164 ~--~~~~--l~~l~~L~~L~l~  181 (308)
T 1h6u_A          164 S--DLTP--LANLSKLTTLKAD  181 (308)
T ss_dssp             C--CCGG--GTTCTTCCEEECC
T ss_pred             C--CChh--hcCCCCCCEEECC
Confidence            2  1221  4455555555555

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.43  E-value=1.8e-14  Score=141.41  Aligned_cols=175  Identities=14%  Similarity=0.105  Sum_probs=97.4

Q ss_pred             hhhhhhcccccccccccccccccccccCCcccEEEeccCCCceec-CCcccccccccccccEEeeecccccc-EEEeecc
Q 039042          128 EKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCL-FSSCTVSNNSFVRLQYIRIEKCHVLE-ELIVVDN  205 (526)
Q Consensus       128 ~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~p~~l~~l~~l~~L~~L~l~~~~~l~-~l~~~~~  205 (526)
                      ++++.|++++|.+......     +..+++|++|++++|. +... .|..+.   .+++|++|++++|. +. ..+..  
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~L~~~~-l~~~~~~~~~~---~~~~L~~L~L~~~~-l~~~~~~~--  137 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-----HFSPFRVQHMDLSNSV-IEVSTLHGILS---QCSKLQNLSLEGLR-LSDPIVNT--  137 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-----CCCCBCCCEEECTTCE-ECHHHHHHHHT---TBCCCSEEECTTCB-CCHHHHHH--
T ss_pred             ccceEEEcCCccccccchh-----hccCCCCCEEEccCCC-cCHHHHHHHHh---hCCCCCEEeCcCcc-cCHHHHHH--
Confidence            6677777777766544322     2367778888887765 3221 233332   67778888887773 32 11111  


Q ss_pred             hhhhcccccccccccceeecccCccccc--cccCcccccCCCCccEEEeccCCCcee--ccccccCCccccccC-CcceE
Q 039042          206 QEEERKNNIVMFPQLQYLKMYDLEKLTS--FCTGDVHMLEFPSLKELWISRCPEFMV--RFKRTTNDLTKKVFP-NLEEL  280 (526)
Q Consensus       206 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~l~~L~~L~l~~c~~l~~--~~~~~~~~~~~~~l~-~L~~L  280 (526)
                              +..+++|++|++++|..++.  ++..   +..+++|++|++++|..++.  ++..+      ..++ +|++|
T Consensus       138 --------l~~~~~L~~L~L~~~~~l~~~~l~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~------~~l~~~L~~L  200 (336)
T 2ast_B          138 --------LAKNSNLVRLNLSGCSGFSEFALQTL---LSSCSRLDELNLSWCFDFTEKHVQVAV------AHVSETITQL  200 (336)
T ss_dssp             --------HTTCTTCSEEECTTCBSCCHHHHHHH---HHHCTTCCEEECCCCTTCCHHHHHHHH------HHSCTTCCEE
T ss_pred             --------HhcCCCCCEEECCCCCCCCHHHHHHH---HhcCCCCCEEcCCCCCCcChHHHHHHH------HhcccCCCEE
Confidence                    24577777777777655553  3322   55677777777777755543  22211      3566 77777


Q ss_pred             EEeecc--ccccceecc--ccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe
Q 039042          281 IVDAEY--IITNKFIFS--EDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE  335 (526)
Q Consensus       281 ~l~~~~--~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~  335 (526)
                      ++++|.  +.+  ..++  ...+++|++|++++|..++  ......+..+++|++|++.
T Consensus       201 ~l~~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~l~~L~~L~l~  255 (336)
T 2ast_B          201 NLSGYRKNLQK--SDLSTLVRRCPNLVHLDLSDSVMLK--NDCFQEFFQLNYLQHLSLS  255 (336)
T ss_dssp             ECCSCGGGSCH--HHHHHHHHHCTTCSEEECTTCTTCC--GGGGGGGGGCTTCCEEECT
T ss_pred             EeCCCcccCCH--HHHHHHHhhCCCCCEEeCCCCCcCC--HHHHHHHhCCCCCCEeeCC
Confidence            777552  221  1111  1245667777777666444  1112244555666666665

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.42  E-value=7.2e-14  Score=137.14  Aligned_cols=103  Identities=19%  Similarity=0.255  Sum_probs=51.6

Q ss_pred             hhhhcccccccccccccccccccccC--CcccEEEeccCCCceecCCcccccccccccccEEeeeccccccE--EEeecc
Q 039042          130 LEKLELRSINIERIWRNQVAAMTCGI--QNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEE--LIVVDN  205 (526)
Q Consensus       130 L~~L~L~~~~l~~~~~~~~~~~~~~l--~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~--l~~~~~  205 (526)
                      ++.++++++.+.+..       +..+  ++++.|++.++. +....+. +.   .+++|++|++++|. +..  ++..  
T Consensus        49 ~~~l~l~~~~~~~~~-------~~~~~~~~l~~L~l~~n~-l~~~~~~-~~---~~~~L~~L~L~~~~-l~~~~~~~~--  113 (336)
T 2ast_B           49 WQTLDLTGKNLHPDV-------TGRLLSQGVIAFRCPRSF-MDQPLAE-HF---SPFRVQHMDLSNSV-IEVSTLHGI--  113 (336)
T ss_dssp             SSEEECTTCBCCHHH-------HHHHHHTTCSEEECTTCE-ECSCCCS-CC---CCBCCCEEECTTCE-ECHHHHHHH--
T ss_pred             heeeccccccCCHHH-------HHhhhhccceEEEcCCcc-ccccchh-hc---cCCCCCEEEccCCC-cCHHHHHHH--
Confidence            556666666544211       2233  666777776653 3332222 22   46667777776663 211  1111  


Q ss_pred             hhhhcccccccccccceeecccCcccc-ccccCcccccCCCCccEEEeccCCCce
Q 039042          206 QEEERKNNIVMFPQLQYLKMYDLEKLT-SFCTGDVHMLEFPSLKELWISRCPEFM  259 (526)
Q Consensus       206 ~~~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~l~~L~~L~l~~c~~l~  259 (526)
                              +..+++|++|++++|. +. ..+..   +..+++|++|++++|..++
T Consensus       114 --------~~~~~~L~~L~L~~~~-l~~~~~~~---l~~~~~L~~L~L~~~~~l~  156 (336)
T 2ast_B          114 --------LSQCSKLQNLSLEGLR-LSDPIVNT---LAKNSNLVRLNLSGCSGFS  156 (336)
T ss_dssp             --------HTTBCCCSEEECTTCB-CCHHHHHH---HTTCTTCSEEECTTCBSCC
T ss_pred             --------HhhCCCCCEEeCcCcc-cCHHHHHH---HhcCCCCCEEECCCCCCCC
Confidence                    1456666666666653 22 22222   4456666666666664444

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.41  E-value=2e-13  Score=129.74  Aligned_cols=201  Identities=13%  Similarity=0.093  Sum_probs=123.3

Q ss_pred             ccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceec
Q 039042          182 SFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVR  261 (526)
Q Consensus       182 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  261 (526)
                      .+++|++|++.++ .+..++.           +..+++|++|+++++ .+..++ .   +..+++|++|++++| .+..+
T Consensus        39 ~l~~L~~L~l~~~-~i~~~~~-----------l~~l~~L~~L~l~~n-~l~~~~-~---l~~l~~L~~L~L~~n-~l~~~  100 (272)
T 3rfs_A           39 ELNSIDQIIANNS-DIKSVQG-----------IQYLPNVRYLALGGN-KLHDIS-A---LKELTNLTYLILTGN-QLQSL  100 (272)
T ss_dssp             HHTTCCEEECTTS-CCCCCTT-----------GGGCTTCCEEECTTS-CCCCCG-G---GTTCTTCCEEECTTS-CCCCC
T ss_pred             cccceeeeeeCCC-Ccccccc-----------cccCCCCcEEECCCC-CCCCch-h---hcCCCCCCEEECCCC-ccCcc
Confidence            6777888888776 4444321           156777888888764 345442 2   557777788887777 55555


Q ss_pred             cccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-ecccc
Q 039042          262 FKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDW  340 (526)
Q Consensus       262 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~  340 (526)
                      ++..+     ..+++|++|++++|.+.                            .++...+..+++|++|++. +....
T Consensus       101 ~~~~~-----~~l~~L~~L~L~~n~l~----------------------------~~~~~~~~~l~~L~~L~L~~n~l~~  147 (272)
T 3rfs_A          101 PNGVF-----DKLTNLKELVLVENQLQ----------------------------SLPDGVFDKLTNLTYLNLAHNQLQS  147 (272)
T ss_dssp             CTTTT-----TTCTTCCEEECTTSCCC----------------------------CCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             ChhHh-----cCCcCCCEEECCCCcCC----------------------------ccCHHHhccCCCCCEEECCCCccCc
Confidence            54432     24666666666655442                            1222233444445555544 22222


Q ss_pred             ccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccC-CCccCCCcCEEEEccCCCcccccch
Q 039042          341 LPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVP-SSTSFQNLTSLEISYCNGLKNVLTF  418 (526)
Q Consensus       341 ~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~  418 (526)
                      ++...+  ..+++|++|++. +.+..+++..+..+++|+.|++++|. +..+++ .+..+++|+.|++++++-.      
T Consensus       148 ~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~------  218 (272)
T 3rfs_A          148 LPKGVF--DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD------  218 (272)
T ss_dssp             CCTTTT--TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC------
T ss_pred             cCHHHh--ccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCCCcc------
Confidence            222221  345667777777 67777777778889999999999985 444444 4578999999999987421      


Q ss_pred             HHHhhcccccEEEEccccccceecccc
Q 039042          419 SIAKTLVRLREMKIESCAMITEIVLAD  445 (526)
Q Consensus       419 ~~~~~l~~L~~L~i~~c~~l~~~~~~~  445 (526)
                         +.+++|+.++++.+.....+|...
T Consensus       219 ---~~~~~l~~l~~~~n~~~g~ip~~~  242 (272)
T 3rfs_A          219 ---CTCPGIRYLSEWINKHSGVVRNSA  242 (272)
T ss_dssp             ---CCTTTTHHHHHHHHHTGGGBBCTT
T ss_pred             ---ccCcHHHHHHHHHHhCCCcccCcc
Confidence               234667777777655455565543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.40  E-value=1.2e-12  Score=126.78  Aligned_cols=145  Identities=17%  Similarity=0.210  Sum_probs=88.8

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      +++|++|++++|.++.+-     + +..+++|++|++++|. ++.+ |.    ++.+++|++|++++| .+..++.    
T Consensus        84 l~~L~~L~L~~n~l~~~~-----~-~~~l~~L~~L~l~~n~-l~~~-~~----l~~l~~L~~L~l~~n-~l~~~~~----  146 (308)
T 1h6u_A           84 LTKITELELSGNPLKNVS-----A-IAGLQSIKTLDLTSTQ-ITDV-TP----LAGLSNLQVLYLDLN-QITNISP----  146 (308)
T ss_dssp             CCSCCEEECCSCCCSCCG-----G-GTTCTTCCEEECTTSC-CCCC-GG----GTTCTTCCEEECCSS-CCCCCGG----
T ss_pred             CCCCCEEEccCCcCCCch-----h-hcCCCCCCEEECCCCC-CCCc-hh----hcCCCCCCEEECCCC-ccCcCcc----
Confidence            667777777777666541     1 4467777777777764 4433 32    236777777777776 4444322    


Q ss_pred             hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY  286 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  286 (526)
                             +..+++|++|+++++ .+..++.    +..+++|++|++++| .+..++. +      ..+++|++|++++|.
T Consensus       147 -------l~~l~~L~~L~l~~n-~l~~~~~----l~~l~~L~~L~l~~n-~l~~~~~-l------~~l~~L~~L~L~~N~  206 (308)
T 1h6u_A          147 -------LAGLTNLQYLSIGNA-QVSDLTP----LANLSKLTTLKADDN-KISDISP-L------ASLPNLIEVHLKNNQ  206 (308)
T ss_dssp             -------GGGCTTCCEEECCSS-CCCCCGG----GTTCTTCCEEECCSS-CCCCCGG-G------GGCTTCCEEECTTSC
T ss_pred             -------ccCCCCccEEEccCC-cCCCChh----hcCCCCCCEEECCCC-ccCcChh-h------cCCCCCCEEEccCCc
Confidence                   146777777777764 4444432    446777777777777 4555543 1      357777777777666


Q ss_pred             ccccceeccccccccccEEEeeeCC
Q 039042          287 IITNKFIFSEDLLCKLKCLDVEFVD  311 (526)
Q Consensus       287 ~~~~~~~~~~~~~~~L~~L~l~~~~  311 (526)
                      +.. +.  +...+++|+.|++++|+
T Consensus       207 l~~-~~--~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          207 ISD-VS--PLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             CCB-CG--GGTTCTTCCEEEEEEEE
T ss_pred             cCc-cc--cccCCCCCCEEEccCCe
Confidence            532 11  34456777777777755

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.38  E-value=1.9e-12  Score=121.44  Aligned_cols=176  Identities=15%  Similarity=0.118  Sum_probs=97.8

Q ss_pred             ceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccccccchhhhhhhhh
Q 039042           53 LELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEKLEK  132 (526)
Q Consensus        53 L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~l~~L~~  132 (526)
                      .+.+++++.+...+|..+    .++++.|++++|.....+...+.+                            +++|++
T Consensus        16 ~~~l~~~~~~l~~~p~~~----~~~l~~L~L~~n~l~~~~~~~~~~----------------------------l~~L~~   63 (251)
T 3m19_A           16 KKEVDCQGKSLDSVPSGI----PADTEKLDLQSTGLATLSDATFRG----------------------------LTKLTW   63 (251)
T ss_dssp             GTEEECTTCCCSSCCSCC----CTTCCEEECTTSCCCCCCTTTTTT----------------------------CTTCCE
T ss_pred             CeEEecCCCCccccCCCC----CCCCCEEEccCCCcCccCHhHhcC----------------------------cccCCE
Confidence            344555555666666532    256777777777655543322222                            566677


Q ss_pred             hcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhccc
Q 039042          133 LELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKN  212 (526)
Q Consensus       133 L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~  212 (526)
                      |++++|.++.+...   . +..+++|++|++++|. ++.+++..+.   .+++|++|++++| .+..++...        
T Consensus        64 L~L~~n~l~~~~~~---~-~~~l~~L~~L~L~~n~-l~~~~~~~~~---~l~~L~~L~L~~N-~l~~~~~~~--------  126 (251)
T 3m19_A           64 LNLDYNQLQTLSAG---V-FDDLTELGTLGLANNQ-LASLPLGVFD---HLTQLDKLYLGGN-QLKSLPSGV--------  126 (251)
T ss_dssp             EECTTSCCCCCCTT---T-TTTCTTCCEEECTTSC-CCCCCTTTTT---TCTTCCEEECCSS-CCCCCCTTT--------
T ss_pred             EECCCCcCCccCHh---H-hccCCcCCEEECCCCc-ccccChhHhc---ccCCCCEEEcCCC-cCCCcChhH--------
Confidence            77777766543211   1 3456777777777653 4444333333   5677777777776 454443321        


Q ss_pred             ccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccc
Q 039042          213 NIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYI  287 (526)
Q Consensus       213 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  287 (526)
                       +..+++|++|+++++ .++.++...  +..+++|++|++++| .+..+++..+     ..+++|+.|++++|.+
T Consensus       127 -~~~l~~L~~L~Ls~N-~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~~~~~-----~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          127 -FDRLTKLKELRLNTN-QLQSIPAGA--FDKLTNLQTLSLSTN-QLQSVPHGAF-----DRLGKLQTITLFGNQF  191 (251)
T ss_dssp             -TTTCTTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSS-CCSCCCTTTT-----TTCTTCCEEECCSCCB
T ss_pred             -hccCCcccEEECcCC-cCCccCHHH--cCcCcCCCEEECCCC-cCCccCHHHH-----hCCCCCCEEEeeCCce
Confidence             135666777777663 555555432  556667777777666 4555554322     2456666666665433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.31  E-value=2.3e-12  Score=124.91  Aligned_cols=91  Identities=16%  Similarity=0.144  Sum_probs=43.7

Q ss_pred             cCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccc
Q 039042          154 GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTS  233 (526)
Q Consensus       154 ~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~  233 (526)
                      .+++|++|++++|... ...|..+.. +.+++|++|++++|. +.......    .. ..+..+++|++|+++++ .+..
T Consensus        89 ~~~~L~~L~l~~n~l~-~~~~~~~~~-~~~~~L~~L~Ls~n~-i~~~~~~~----~~-~~~~~~~~L~~L~Ls~n-~l~~  159 (310)
T 4glp_A           89 AYSRLKELTLEDLKIT-GTMPPLPLE-ATGLALSSLRLRNVS-WATGRSWL----AE-LQQWLKPGLKVLSIAQA-HSPA  159 (310)
T ss_dssp             HHSCCCEEEEESCCCB-SCCCCCSSS-CCCBCCSSCEEESCC-CSSTTSSH----HH-HHTTBCSCCCEEEEECC-SSCC
T ss_pred             ccCceeEEEeeCCEec-cchhhhhhh-ccCCCCCEEEeeccc-ccchhhhh----HH-HHhhhccCCCEEEeeCC-Ccch
Confidence            3456777777776433 233444310 267777777777763 32100000    00 00123556666666553 3333


Q ss_pred             cccCcccccCCCCccEEEeccC
Q 039042          234 FCTGDVHMLEFPSLKELWISRC  255 (526)
Q Consensus       234 ~~~~~~~~~~l~~L~~L~l~~c  255 (526)
                      ++...  +..+++|++|++++|
T Consensus       160 ~~~~~--~~~l~~L~~L~Ls~N  179 (310)
T 4glp_A          160 FSCEQ--VRAFPALTSLDLSDN  179 (310)
T ss_dssp             CCTTS--CCCCTTCCEEECCSC
T ss_pred             hhHHH--hccCCCCCEEECCCC
Confidence            33221  445555666665555

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.28  E-value=4.9e-13  Score=133.88  Aligned_cols=98  Identities=8%  Similarity=0.028  Sum_probs=51.6

Q ss_pred             cccCCcccEEEeccCCCceecCCccccc-ccccccccEEeeeccccccEEEeecc-hhhhcccccccccccceeecccCc
Q 039042          152 TCGIQNLTHLTLYNCMNLRCLFSSCTVS-NNSFVRLQYIRIEKCHVLEELIVVDN-QEEERKNNIVMFPQLQYLKMYDLE  229 (526)
Q Consensus       152 ~~~l~~L~~L~L~~c~~l~~l~p~~l~~-l~~l~~L~~L~l~~~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~  229 (526)
                      +..+++|++|++++|. ++...+..++. +..+++|++|++++| .+..+..... +.......+..+++|++|+++++ 
T Consensus        28 l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-  104 (386)
T 2ca6_A           28 LLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-  104 (386)
T ss_dssp             HHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-
T ss_pred             HhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCC-
Confidence            4567889999998874 33222222111 336888888888887 2222211100 00000111245677777777764 


Q ss_pred             cccc-----cccCcccccCCCCccEEEeccC
Q 039042          230 KLTS-----FCTGDVHMLEFPSLKELWISRC  255 (526)
Q Consensus       230 ~l~~-----~~~~~~~~~~l~~L~~L~l~~c  255 (526)
                      .+..     ++..   +..+++|++|++++|
T Consensus       105 ~l~~~~~~~l~~~---l~~~~~L~~L~L~~n  132 (386)
T 2ca6_A          105 AFGPTAQEPLIDF---LSKHTPLEHLYLHNN  132 (386)
T ss_dssp             CCCTTTHHHHHHH---HHHCTTCCEEECCSS
T ss_pred             cCCHHHHHHHHHH---HHhCCCCCEEECcCC
Confidence            3333     2222   456677777777766

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.27  E-value=7.5e-12  Score=121.21  Aligned_cols=152  Identities=13%  Similarity=0.139  Sum_probs=108.1

Q ss_pred             ccccceEEEec-cCceeeccccccccCcccEEEEeccCCccc--ccC--CCccCCCcCEEEEccCCCcccccch--HHHh
Q 039042          350 MEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLIN--LVP--SSTSFQNLTSLEISYCNGLKNVLTF--SIAK  422 (526)
Q Consensus       350 ~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~--l~~--~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~  422 (526)
                      .+++|++|++. +.+..+++..+..+++|++|++++|.....  ++.  ....+++|++|++++| +++.++..  ...+
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~  221 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAA  221 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHh
Confidence            34566666666 667777677788889999999999865431  222  2357889999999988 56654421  1346


Q ss_pred             hcccccEEEEcccccccee-cccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCcc
Q 039042          423 TLVRLREMKIESCAMITEI-VLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMK  501 (526)
Q Consensus       423 ~l~~L~~L~i~~c~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~  501 (526)
                      .+++|++|+++++. +... |.....         ...+++|++|+++++ .++.+|...    +++|++|++++| +++
T Consensus       222 ~l~~L~~L~Ls~N~-l~~~~p~~~~~---------~~~~~~L~~L~Ls~N-~l~~lp~~~----~~~L~~L~Ls~N-~l~  285 (310)
T 4glp_A          222 AGVQPHSLDLSHNS-LRATVNPSAPR---------CMWSSALNSLNLSFA-GLEQVPKGL----PAKLRVLDLSSN-RLN  285 (310)
T ss_dssp             HTCCCSSEECTTSC-CCCCCCSCCSS---------CCCCTTCCCEECCSS-CCCSCCSCC----CSCCSCEECCSC-CCC
T ss_pred             cCCCCCEEECCCCC-CCccchhhHHh---------ccCcCcCCEEECCCC-CCCchhhhh----cCCCCEEECCCC-cCC
Confidence            78999999999965 5544 433221         123479999999884 677887752    489999999986 577


Q ss_pred             ccCCCCCCCcccceEEec
Q 039042          502 GFSRGELSTPVLHKVQLN  519 (526)
Q Consensus       502 ~l~~~~~~~~~L~~l~l~  519 (526)
                      .+|. ...+++|+.|+++
T Consensus       286 ~~~~-~~~l~~L~~L~L~  302 (310)
T 4glp_A          286 RAPQ-PDELPEVDNLTLD  302 (310)
T ss_dssp             SCCC-TTSCCCCSCEECS
T ss_pred             CCch-hhhCCCccEEECc
Confidence            7765 4557999999987

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.27  E-value=4.7e-13  Score=134.05  Aligned_cols=249  Identities=16%  Similarity=0.093  Sum_probs=131.5

Q ss_pred             HHhccccccceecccccccccccc-ccc--ccccCCcccEEEEecCCCCCC----chhhhhhccCcccccccccchhhhc
Q 039042           44 ILQLQGIEDLELHELQEQDVNYFA-NEL--VRVGSSQLKFLGIHGCRDALN----PSAESKRQRQEESANDMQSNELILE  116 (526)
Q Consensus        44 ~~~l~~~~~L~~l~l~~~~~~~~~-~~~--~~~~l~~L~~L~L~~c~~~~~----p~~~l~~l~~L~~i~~~~~l~~~~~  116 (526)
                      ...+....+|+.++++++.+.... ..+  ....+++|++|++++|.....    |..+                ..+. 
T Consensus        25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~----------------~~l~-   87 (386)
T 2ca6_A           25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL----------------RLLL-   87 (386)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHH----------------HHHH-
T ss_pred             HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHH----------------HHHH-
Confidence            345556667777777776554421 111  133577888888887754322    2211                0000 


Q ss_pred             ccccccchhhhhhhhhhccccccccccccc-ccccccccCCcccEEEeccCCCceecCCccccc-cccc---------cc
Q 039042          117 DNANISNTLFLEKLEKLELRSINIERIWRN-QVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVS-NNSF---------VR  185 (526)
Q Consensus       117 ~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~-~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~-l~~l---------~~  185 (526)
                           ..+..+++|++|+|++|.+...... .+.. +..+++|++|++++|.. +...+..++. +..+         ++
T Consensus        88 -----~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~  160 (386)
T 2ca6_A           88 -----QALLKCPKLHTVRLSDNAFGPTAQEPLIDF-LSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPP  160 (386)
T ss_dssp             -----HHHTTCTTCCEEECCSCCCCTTTHHHHHHH-HHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             -----HHHhhCCcccEEECCCCcCCHHHHHHHHHH-HHhCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCC
Confidence                 1112267788888888866642111 1222 45778888888888753 2211222221 1123         78


Q ss_pred             ccEEeeecccccc--EEEeecchhhhcccccccccccceeecccCccccc-----ccc-CcccccCCCCccEEEeccCCC
Q 039042          186 LQYIRIEKCHVLE--ELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTS-----FCT-GDVHMLEFPSLKELWISRCPE  257 (526)
Q Consensus       186 L~~L~l~~~~~l~--~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-----~~~-~~~~~~~l~~L~~L~l~~c~~  257 (526)
                      |++|++++|. +.  .++.       ....+..+++|++|++++| .+..     +.. .   +..+++|++|++++|. 
T Consensus       161 L~~L~L~~n~-l~~~~~~~-------l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~---l~~~~~L~~L~Ls~n~-  227 (386)
T 2ca6_A          161 LRSIICGRNR-LENGSMKE-------WAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEG---LAYCQELKVLDLQDNT-  227 (386)
T ss_dssp             CCEEECCSSC-CTGGGHHH-------HHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTT---GGGCTTCCEEECCSSC-
T ss_pred             CcEEECCCCC-CCcHHHHH-------HHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHH---hhcCCCccEEECcCCC-
Confidence            8888888873 32  1110       0011245677888888775 3331     111 2   5577888888888773 


Q ss_pred             c-----eeccccccCCccccccCCcceEEEeecccccc-ceeccc----cccccccEEEeeeCCcccc--cccchhHhhc
Q 039042          258 F-----MVRFKRTTNDLTKKVFPNLEELIVDAEYIITN-KFIFSE----DLLCKLKCLDVEFVDELTT--ILSLDDFLQR  325 (526)
Q Consensus       258 l-----~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~----~~~~~L~~L~l~~~~~l~~--~~~~~~~l~~  325 (526)
                      +     ..++..+      ..+++|++|++++|.+... ...++.    +.+++|++|++++|..-..  ..++.....+
T Consensus       228 l~~~g~~~l~~~l------~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~  301 (386)
T 2ca6_A          228 FTHLGSSALAIAL------KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK  301 (386)
T ss_dssp             CHHHHHHHHHHHG------GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHH------ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhc
Confidence            4     3333332      3567788888776665321 011122    2366777777777653210  0133333345


Q ss_pred             CCCccEEEEe
Q 039042          326 FPTLKVLQIE  335 (526)
Q Consensus       326 l~~L~~L~l~  335 (526)
                      +++|++|++.
T Consensus       302 l~~L~~L~l~  311 (386)
T 2ca6_A          302 MPDLLFLELN  311 (386)
T ss_dssp             CTTCCEEECT
T ss_pred             CCCceEEEcc
Confidence            6677777666

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.26  E-value=4.7e-11  Score=111.79  Aligned_cols=58  Identities=12%  Similarity=0.087  Sum_probs=28.7

Q ss_pred             cccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccC-CCccCCCcCEEEEccC
Q 039042          351 EVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVP-SSTSFQNLTSLEISYC  409 (526)
Q Consensus       351 ~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c  409 (526)
                      +++|++|++. +.+..+++..+..+++|+.|+++++. +..+++ .+..+++|+.|+++++
T Consensus       130 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSC
T ss_pred             CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCC
Confidence            3445555555 45555544445555555666655553 222222 3344555555555554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.25  E-value=1.7e-11  Score=110.36  Aligned_cols=128  Identities=16%  Similarity=0.219  Sum_probs=67.3

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccE-EEeecc
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEE-LIVVDN  205 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~-l~~~~~  205 (526)
                      +++|++|++++|.++...     . +..+++|++|++++|. ++...|..++   .+++|++|++++|. +.. .+..  
T Consensus        65 l~~L~~L~l~~n~~~~~~-----~-l~~l~~L~~L~l~~n~-l~~~~~~~l~---~l~~L~~L~Ls~n~-i~~~~~~~--  131 (197)
T 4ezg_A           65 AHNIKDLTINNIHATNYN-----P-ISGLSNLERLRIMGKD-VTSDKIPNLS---GLTSLTLLDISHSA-HDDSILTK--  131 (197)
T ss_dssp             CTTCSEEEEESCCCSCCG-----G-GTTCTTCCEEEEECTT-CBGGGSCCCT---TCTTCCEEECCSSB-CBGGGHHH--
T ss_pred             CCCCCEEEccCCCCCcch-----h-hhcCCCCCEEEeECCc-cCcccChhhc---CCCCCCEEEecCCc-cCcHhHHH--
Confidence            556666666666444321     1 4456667777776653 3322233333   56667777776662 222 1111  


Q ss_pred             hhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeec
Q 039042          206 QEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAE  285 (526)
Q Consensus       206 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  285 (526)
                              +..+++|++|++++|..+..++ .   +..+++|++|++++| .+..++ .+      ..+++|++|++++|
T Consensus       132 --------l~~l~~L~~L~L~~n~~i~~~~-~---l~~l~~L~~L~l~~n-~i~~~~-~l------~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          132 --------INTLPKVNSIDLSYNGAITDIM-P---LKTLPELKSLNIQFD-GVHDYR-GI------EDFPKLNQLYAFSQ  191 (197)
T ss_dssp             --------HTTCSSCCEEECCSCTBCCCCG-G---GGGCSSCCEEECTTB-CCCCCT-TG------GGCSSCCEEEECBC
T ss_pred             --------HhhCCCCCEEEccCCCCccccH-h---hcCCCCCCEEECCCC-CCcChH-Hh------ccCCCCCEEEeeCc
Confidence                    1456666666666654455553 2   446666666666666 344443 11      34566666666655


Q ss_pred             cc
Q 039042          286 YI  287 (526)
Q Consensus       286 ~~  287 (526)
                      .+
T Consensus       192 ~i  193 (197)
T 4ezg_A          192 TI  193 (197)
T ss_dssp             --
T ss_pred             cc
Confidence            44

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.24  E-value=2.1e-11  Score=109.63  Aligned_cols=148  Identities=16%  Similarity=0.124  Sum_probs=88.5

Q ss_pred             hhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccE-EEeec
Q 039042          126 FLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEE-LIVVD  204 (526)
Q Consensus       126 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~-l~~~~  204 (526)
                      .+++|++|++++|.++.+.     + +..+++|++|++++| .++.+ + .   ++.+++|++|++++| .+.. .+.. 
T Consensus        42 ~l~~L~~L~l~~n~i~~l~-----~-l~~l~~L~~L~l~~n-~~~~~-~-~---l~~l~~L~~L~l~~n-~l~~~~~~~-  107 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLT-----G-IEYAHNIKDLTINNI-HATNY-N-P---ISGLSNLERLRIMGK-DVTSDKIPN-  107 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCT-----T-GGGCTTCSEEEEESC-CCSCC-G-G---GTTCTTCCEEEEECT-TCBGGGSCC-
T ss_pred             hcCCccEEeccCCCccChH-----H-HhcCCCCCEEEccCC-CCCcc-h-h---hhcCCCCCEEEeECC-ccCcccChh-
Confidence            4777888888888776542     1 446788888888877 34432 2 3   336778888888877 3332 2222 


Q ss_pred             chhhhcccccccccccceeecccCccccc-cccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEe
Q 039042          205 NQEEERKNNIVMFPQLQYLKMYDLEKLTS-FCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVD  283 (526)
Q Consensus       205 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~  283 (526)
                               +..+++|++|+++++ .+.. .+..   +..+++|++|++++|..+..++. +      ..+++|+.|+++
T Consensus       108 ---------l~~l~~L~~L~Ls~n-~i~~~~~~~---l~~l~~L~~L~L~~n~~i~~~~~-l------~~l~~L~~L~l~  167 (197)
T 4ezg_A          108 ---------LSGLTSLTLLDISHS-AHDDSILTK---INTLPKVNSIDLSYNGAITDIMP-L------KTLPELKSLNIQ  167 (197)
T ss_dssp             ---------CTTCTTCCEEECCSS-BCBGGGHHH---HTTCSSCCEEECCSCTBCCCCGG-G------GGCSSCCEEECT
T ss_pred             ---------hcCCCCCCEEEecCC-ccCcHhHHH---HhhCCCCCEEEccCCCCccccHh-h------cCCCCCCEEECC
Confidence                     256777888888775 3333 3322   55777777777777754555542 2      356677777777


Q ss_pred             eccccccceeccccccccccEEEeeeC
Q 039042          284 AEYIITNKFIFSEDLLCKLKCLDVEFV  310 (526)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~L~~L~l~~~  310 (526)
                      +|.+.+ +.  +...+++|++|+++++
T Consensus       168 ~n~i~~-~~--~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          168 FDGVHD-YR--GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             TBCCCC-CT--TGGGCSSCCEEEECBC
T ss_pred             CCCCcC-hH--HhccCCCCCEEEeeCc
Confidence            665532 11  3334556666666554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.21  E-value=3.4e-11  Score=115.37  Aligned_cols=100  Identities=24%  Similarity=0.286  Sum_probs=45.6

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      +++|++|++++|.++.+..      +..+++|++|++++|. ++.+ |.    ++.+++|++|++++| .+..++.    
T Consensus        67 l~~L~~L~L~~n~l~~~~~------l~~l~~L~~L~l~~n~-l~~~-~~----l~~l~~L~~L~L~~n-~i~~~~~----  129 (291)
T 1h6t_A           67 LPNVTKLFLNGNKLTDIKP------LANLKNLGWLFLDENK-VKDL-SS----LKDLKKLKSLSLEHN-GISDING----  129 (291)
T ss_dssp             CTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSC-CCCG-GG----GTTCTTCCEEECTTS-CCCCCGG----
T ss_pred             CCCCCEEEccCCccCCCcc------cccCCCCCEEECCCCc-CCCC-hh----hccCCCCCEEECCCC-cCCCChh----
Confidence            4555555555554443311      2245555555555543 3322 21    224555555555555 3333211    


Q ss_pred             hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccC
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRC  255 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c  255 (526)
                             +..+++|++|+++++ .+..+ ..   +..+++|++|++++|
T Consensus       130 -------l~~l~~L~~L~l~~n-~l~~~-~~---l~~l~~L~~L~L~~N  166 (291)
T 1h6t_A          130 -------LVHLPQLESLYLGNN-KITDI-TV---LSRLTKLDTLSLEDN  166 (291)
T ss_dssp             -------GGGCTTCCEEECCSS-CCCCC-GG---GGGCTTCSEEECCSS
T ss_pred             -------hcCCCCCCEEEccCC-cCCcc-hh---hccCCCCCEEEccCC
Confidence                   134555555555543 33333 11   334555555555554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.21  E-value=8.4e-11  Score=112.61  Aligned_cols=169  Identities=12%  Similarity=0.091  Sum_probs=115.2

Q ss_pred             ccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhcccccccchhhhhhhhhhccccccccccccccccc
Q 039042           73 VGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAA  150 (526)
Q Consensus        73 ~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~  150 (526)
                      ..+++|+.|++++|.....|.  +..+++|++  +.++. +..+..       ...+++|++|++++|.++.+.     .
T Consensus        43 ~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~-l~~~~~-------l~~l~~L~~L~l~~n~l~~~~-----~  107 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNK-LTDIKP-------LANLKNLGWLFLDENKVKDLS-----S  107 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSC-CCCCGG-------GTTCTTCCEEECCSSCCCCGG-----G
T ss_pred             hhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCc-cCCCcc-------cccCCCCCEEECCCCcCCCCh-----h
Confidence            346666666666665444443  555666666  44332 222221       223889999999999877641     1


Q ss_pred             ccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCcc
Q 039042          151 MTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEK  230 (526)
Q Consensus       151 ~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  230 (526)
                       +..+++|++|++++|. ++.+ + .   ++.+++|++|++++| .+..++ .          +..+++|++|+++++ .
T Consensus       108 -l~~l~~L~~L~L~~n~-i~~~-~-~---l~~l~~L~~L~l~~n-~l~~~~-~----------l~~l~~L~~L~L~~N-~  167 (291)
T 1h6t_A          108 -LKDLKKLKSLSLEHNG-ISDI-N-G---LVHLPQLESLYLGNN-KITDIT-V----------LSRLTKLDTLSLEDN-Q  167 (291)
T ss_dssp             -GTTCTTCCEEECTTSC-CCCC-G-G---GGGCTTCCEEECCSS-CCCCCG-G----------GGGCTTCSEEECCSS-C
T ss_pred             -hccCCCCCEEECCCCc-CCCC-h-h---hcCCCCCCEEEccCC-cCCcch-h----------hccCCCCCEEEccCC-c
Confidence             5589999999999974 4443 3 3   347899999999998 555542 1          267899999999985 5


Q ss_pred             ccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecccc
Q 039042          231 LTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYII  288 (526)
Q Consensus       231 l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  288 (526)
                      +..++.    +..+++|+.|++++| .++.++. +      ..+++|+.|++++|.+.
T Consensus       168 l~~~~~----l~~l~~L~~L~L~~N-~i~~l~~-l------~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          168 ISDIVP----LAGLTKLQNLYLSKN-HISDLRA-L------AGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CCCCGG----GTTCTTCCEEECCSS-CCCBCGG-G------TTCTTCSEEEEEEEEEE
T ss_pred             cccchh----hcCCCccCEEECCCC-cCCCChh-h------ccCCCCCEEECcCCccc
Confidence            565532    558899999999998 6676653 2      46889999999977653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.18  E-value=8.9e-11  Score=123.62  Aligned_cols=124  Identities=15%  Similarity=0.192  Sum_probs=54.4

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      +++|+.|+|++|.+..+.     . +..+++|+.|+|++|. +..+ + .   ++.+++|+.|+|++| .+..++ .   
T Consensus        86 l~~L~~L~Ls~N~l~~l~-----~-l~~l~~L~~L~Ls~N~-l~~l-~-~---l~~l~~L~~L~Ls~N-~l~~l~-~---  148 (605)
T 1m9s_A           86 LKNLGWLFLDENKIKDLS-----S-LKDLKKLKSLSLEHNG-ISDI-N-G---LVHLPQLESLYLGNN-KITDIT-V---  148 (605)
T ss_dssp             CTTCCEEECCSSCCCCCT-----T-STTCTTCCEEECTTSC-CCCC-G-G---GGGCTTCSEEECCSS-CCCCCG-G---
T ss_pred             CCCCCEEECcCCCCCCCh-----h-hccCCCCCEEEecCCC-CCCC-c-c---ccCCCccCEEECCCC-ccCCch-h---
Confidence            455555555555444321     1 3345555555555543 2222 2 1   224555555555555 333221 1   


Q ss_pred             hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY  286 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  286 (526)
                             +..+++|++|++++| .+..++.    +..+++|+.|++++| .+..++. +      ..+++|+.|++++|.
T Consensus       149 -------l~~l~~L~~L~Ls~N-~l~~~~~----l~~l~~L~~L~Ls~N-~i~~l~~-l------~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          149 -------LSRLTKLDTLSLEDN-QISDIVP----LAGLTKLQNLYLSKN-HISDLRA-L------AGLKNLDVLELFSQE  208 (605)
T ss_dssp             -------GGSCTTCSEEECCSS-CCCCCGG----GTTCTTCCEEECCSS-CCCBCGG-G------TTCTTCSEEECCSEE
T ss_pred             -------hcccCCCCEEECcCC-cCCCchh----hccCCCCCEEECcCC-CCCCChH-H------ccCCCCCEEEccCCc
Confidence                   134555555555543 2333211    234555555555555 3443321 1      245555555555443


Q ss_pred             c
Q 039042          287 I  287 (526)
Q Consensus       287 ~  287 (526)
                      +
T Consensus       209 l  209 (605)
T 1m9s_A          209 C  209 (605)
T ss_dssp             E
T ss_pred             C
Confidence            3

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.17  E-value=5.1e-11  Score=125.46  Aligned_cols=166  Identities=16%  Similarity=0.200  Sum_probs=119.5

Q ss_pred             hhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeec
Q 039042          125 LFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVD  204 (526)
Q Consensus       125 ~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~  204 (526)
                      ..+++|+.|++++|.+..+.     + +..+++|+.|+|++|. +..+.|  +.   .+++|++|+|++| .+..++.  
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~-----~-l~~l~~L~~L~Ls~N~-l~~~~~--l~---~l~~L~~L~Ls~N-~l~~l~~--  104 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQ-----G-IQYLPNVTKLFLNGNK-LTDIKP--LT---NLKNLGWLFLDEN-KIKDLSS--  104 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCT-----T-GGGCTTCCEEECTTSC-CCCCGG--GG---GCTTCCEEECCSS-CCCCCTT--
T ss_pred             hcCCCCCEEECcCCCCCCCh-----H-HccCCCCCEEEeeCCC-CCCChh--hc---cCCCCCEEECcCC-CCCCChh--
Confidence            35888999999998777551     1 5578999999999874 454433  33   7899999999998 5555431  


Q ss_pred             chhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEee
Q 039042          205 NQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDA  284 (526)
Q Consensus       205 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~  284 (526)
                               +..+++|++|+++++ .+..++ .   +..+++|+.|++++| .+..++ .+      ..+++|+.|++++
T Consensus       105 ---------l~~l~~L~~L~Ls~N-~l~~l~-~---l~~l~~L~~L~Ls~N-~l~~l~-~l------~~l~~L~~L~Ls~  162 (605)
T 1m9s_A          105 ---------LKDLKKLKSLSLEHN-GISDIN-G---LVHLPQLESLYLGNN-KITDIT-VL------SRLTKLDTLSLED  162 (605)
T ss_dssp             ---------STTCTTCCEEECTTS-CCCCCG-G---GGGCTTCSEEECCSS-CCCCCG-GG------GSCTTCSEEECCS
T ss_pred             ---------hccCCCCCEEEecCC-CCCCCc-c---ccCCCccCEEECCCC-ccCCch-hh------cccCCCCEEECcC
Confidence                     267889999999875 455552 2   668899999999988 566552 22      4688999999988


Q ss_pred             ccccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe
Q 039042          285 EYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE  335 (526)
Q Consensus       285 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~  335 (526)
                      |.+..   ..+...+++|+.|++++|.. .  .++  .+..+++|+.|++.
T Consensus       163 N~l~~---~~~l~~l~~L~~L~Ls~N~i-~--~l~--~l~~l~~L~~L~L~  205 (605)
T 1m9s_A          163 NQISD---IVPLAGLTKLQNLYLSKNHI-S--DLR--ALAGLKNLDVLELF  205 (605)
T ss_dssp             SCCCC---CGGGTTCTTCCEEECCSSCC-C--BCG--GGTTCTTCSEEECC
T ss_pred             CcCCC---chhhccCCCCCEEECcCCCC-C--CCh--HHccCCCCCEEEcc
Confidence            77642   22355678899999988754 3  232  57778888888888

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.15  E-value=2.3e-12  Score=134.92  Aligned_cols=103  Identities=17%  Similarity=0.214  Sum_probs=75.1

Q ss_pred             CcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccc
Q 039042          156 QNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFC  235 (526)
Q Consensus       156 ~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~  235 (526)
                      ..|+.|++++| .++.+ |. ++   .+++|++|++++| .+..+|..+          +.+++|++|+++++ .++.+|
T Consensus       441 ~~L~~L~Ls~n-~l~~l-p~-~~---~l~~L~~L~Ls~N-~l~~lp~~~----------~~l~~L~~L~Ls~N-~l~~lp  502 (567)
T 1dce_A          441 ADVRVLHLAHK-DLTVL-CH-LE---QLLLVTHLDLSHN-RLRALPPAL----------AALRCLEVLQASDN-ALENVD  502 (567)
T ss_dssp             TTCSEEECTTS-CCSSC-CC-GG---GGTTCCEEECCSS-CCCCCCGGG----------GGCTTCCEEECCSS-CCCCCG
T ss_pred             cCceEEEecCC-CCCCC-cC-cc---ccccCcEeecCcc-cccccchhh----------hcCCCCCEEECCCC-CCCCCc
Confidence            45888999887 45554 64 44   7889999999988 666666544          67888999999874 667776


Q ss_pred             cCcccccCCCCccEEEeccCCCceec--cccccCCccccccCCcceEEEeeccc
Q 039042          236 TGDVHMLEFPSLKELWISRCPEFMVR--FKRTTNDLTKKVFPNLEELIVDAEYI  287 (526)
Q Consensus       236 ~~~~~~~~l~~L~~L~l~~c~~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~  287 (526)
                       .   ++.+++|+.|++++| +++.+  |..+      ..+++|+.|++++|.+
T Consensus       503 -~---l~~l~~L~~L~Ls~N-~l~~~~~p~~l------~~l~~L~~L~L~~N~l  545 (567)
T 1dce_A          503 -G---VANLPRLQELLLCNN-RLQQSAAIQPL------VSCPRLVLLNLQGNSL  545 (567)
T ss_dssp             -G---GTTCSSCCEEECCSS-CCCSSSTTGGG------GGCTTCCEEECTTSGG
T ss_pred             -c---cCCCCCCcEEECCCC-CCCCCCCcHHH------hcCCCCCEEEecCCcC
Confidence             3   778888888888888 56666  4443      3577788888776655

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.13  E-value=3.2e-12  Score=126.68  Aligned_cols=38  Identities=8%  Similarity=-0.006  Sum_probs=17.4

Q ss_pred             cccCcccEEEEeccC-------CcccccCCCccCCCcCEEEEccC
Q 039042          372 SIMNNLVILHVTNCH-------RLINLVPSSTSFQNLTSLEISYC  409 (526)
Q Consensus       372 ~~l~~L~~L~l~~c~-------~l~~l~~~~~~~~~L~~L~l~~c  409 (526)
                      ..+++|+.|++++|.       .+..++..+..+++|+.|+++++
T Consensus       250 ~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N  294 (362)
T 3goz_A          250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK  294 (362)
T ss_dssp             TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred             hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence            334556666665553       01122223334455555555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.13  E-value=4.2e-12  Score=125.86  Aligned_cols=37  Identities=11%  Similarity=0.002  Sum_probs=20.4

Q ss_pred             cCCcccEEEeccCCCceecCC----cccccccccc-cccEEeeecc
Q 039042          154 GIQNLTHLTLYNCMNLRCLFS----SCTVSNNSFV-RLQYIRIEKC  194 (526)
Q Consensus       154 ~l~~L~~L~L~~c~~l~~l~p----~~l~~l~~l~-~L~~L~l~~~  194 (526)
                      ..++|++|++++|. ++...+    ..+.   .++ +|++|++++|
T Consensus        20 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~---~~~~~L~~L~Ls~N   61 (362)
T 3goz_A           20 IPHGVTSLDLSLNN-LYSISTVELIQAFA---NTPASVTSLNLSGN   61 (362)
T ss_dssp             SCTTCCEEECTTSC-GGGSCHHHHHHHHH---TCCTTCCEEECCSS
T ss_pred             CCCCceEEEccCCC-CChHHHHHHHHHHH---hCCCceeEEECcCC
Confidence            34557777777764 443322    2222   455 6777777766

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.11  E-value=1.7e-10  Score=106.35  Aligned_cols=16  Identities=13%  Similarity=0.081  Sum_probs=9.1

Q ss_pred             CcccEEEEecCCCCCC
Q 039042           76 SQLKFLGIHGCRDALN   91 (526)
Q Consensus        76 ~~L~~L~L~~c~~~~~   91 (526)
                      ++|++|++++|.....
T Consensus        40 ~~L~~L~Ls~n~i~~~   55 (229)
T 3e6j_A           40 TNAQILYLHDNQITKL   55 (229)
T ss_dssp             TTCSEEECCSSCCCCC
T ss_pred             CCCCEEEcCCCccCcc
Confidence            5566666666654443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.11  E-value=9.4e-11  Score=106.35  Aligned_cols=108  Identities=21%  Similarity=0.268  Sum_probs=55.2

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      +++|++|++++|.++.+    +.+.+..+++|++|++++|. ++.+++..+.   .+++|++|++++| .+..++...  
T Consensus        51 l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~---~l~~L~~L~L~~N-~l~~~~~~~--  119 (208)
T 2o6s_A           51 LTSLTQLYLGGNKLQSL----PNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFD---KLTQLKELALNTN-QLQSLPDGV--  119 (208)
T ss_dssp             CTTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSC-CCCCCTTTTT---TCTTCCEEECCSS-CCCCCCTTT--
T ss_pred             cccCcEEECCCCccCcc----ChhhcCCCCCcCEEECCCCc-CCccCHhHhc---CccCCCEEEcCCC-cCcccCHhH--
Confidence            55666666666655543    11113356666666666653 3333332222   5666666666665 344333221  


Q ss_pred             hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccC
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRC  255 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c  255 (526)
                             +..+++|++|+++++ .+..++...  +..+++|++|+++++
T Consensus       120 -------~~~l~~L~~L~l~~N-~l~~~~~~~--~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A          120 -------FDKLTQLKDLRLYQN-QLKSVPDGV--FDRLTSLQYIWLHDN  158 (208)
T ss_dssp             -------TTTCTTCCEEECCSS-CCSCCCTTT--TTTCTTCCEEECCSC
T ss_pred             -------hccCCcCCEEECCCC-ccceeCHHH--hccCCCccEEEecCC
Confidence                   134566666666653 344444331  445566666666655

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.10  E-value=2.4e-10  Score=104.66  Aligned_cols=131  Identities=15%  Similarity=0.103  Sum_probs=67.0

Q ss_pred             hhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchh
Q 039042          128 EKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQE  207 (526)
Q Consensus       128 ~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~  207 (526)
                      ++|+.|++++|.++.+...   . +..+++|++|++++|. ++.+.|..+.   .+++|++|++++| .+..++....  
T Consensus        32 ~~l~~L~l~~n~i~~i~~~---~-~~~l~~L~~L~Ls~N~-i~~~~~~~~~---~l~~L~~L~Ls~N-~l~~l~~~~f--  100 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPG---A-FSPYKKLRRIDLSNNQ-ISELAPDAFQ---GLRSLNSLVLYGN-KITELPKSLF--  100 (220)
T ss_dssp             TTCCEEECCSSCCCEECTT---S-STTCTTCCEEECCSSC-CCEECTTTTT---TCSSCCEEECCSS-CCCCCCTTTT--
T ss_pred             cCCCEEECCCCcCCCcCHh---H-hhCCCCCCEEECCCCc-CCCcCHHHhh---CCcCCCEEECCCC-cCCccCHhHc--
Confidence            4566666666655544211   1 3456666666666643 3444344443   5666666666665 4444433211  


Q ss_pred             hhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeec
Q 039042          208 EERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAE  285 (526)
Q Consensus       208 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  285 (526)
                             ..+++|++|+++++ .+..++...  +..+++|++|+++++ .++.++...+     ..+++|+.|++++|
T Consensus       101 -------~~l~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~~~~~-----~~l~~L~~L~L~~N  162 (220)
T 2v9t_B          101 -------EGLFSLQLLLLNAN-KINCLRVDA--FQDLHNLNLLSLYDN-KLQTIAKGTF-----SPLRAIQTMHLAQN  162 (220)
T ss_dssp             -------TTCTTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSS-CCSCCCTTTT-----TTCTTCCEEECCSS
T ss_pred             -------cCCCCCCEEECCCC-CCCEeCHHH--cCCCCCCCEEECCCC-cCCEECHHHH-----hCCCCCCEEEeCCC
Confidence                   34566666666653 444443322  445566666666665 4444444322     23555555555544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.08  E-value=3.4e-10  Score=106.62  Aligned_cols=163  Identities=16%  Similarity=0.168  Sum_probs=116.1

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      +.++..++++++.++++.   .   +..+++|++|++++| .++.+ | .   ++.+++|++|++++| .+..++. +  
T Consensus        18 l~~l~~l~l~~~~i~~~~---~---~~~l~~L~~L~l~~n-~i~~l-~-~---l~~l~~L~~L~L~~N-~i~~~~~-l--   81 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV---S---QKELSGVQNFNGDNS-NIQSL-A-G---MQFFTNLKELHLSHN-QISDLSP-L--   81 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE---C---HHHHTTCSEEECTTS-CCCCC-T-T---GGGCTTCCEEECCSS-CCCCCGG-G--
T ss_pred             HHHHHHHHhcCCCccccc---c---hhhcCcCcEEECcCC-Ccccc-h-H---HhhCCCCCEEECCCC-ccCCChh-h--
Confidence            788899999999887663   1   447899999999997 45554 4 3   347899999999998 5665543 2  


Q ss_pred             hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY  286 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  286 (526)
                              ..+++|++|+++++ .++.++..   . . ++|++|++++| .++.++. +      ..+++|+.|++++|.
T Consensus        82 --------~~l~~L~~L~L~~N-~l~~l~~~---~-~-~~L~~L~L~~N-~l~~~~~-l------~~l~~L~~L~Ls~N~  139 (263)
T 1xeu_A           82 --------KDLTKLEELSVNRN-RLKNLNGI---P-S-ACLSRLFLDNN-ELRDTDS-L------IHLKNLEILSIRNNK  139 (263)
T ss_dssp             --------TTCSSCCEEECCSS-CCSCCTTC---C-C-SSCCEEECCSS-CCSBSGG-G------TTCTTCCEEECTTSC
T ss_pred             --------ccCCCCCEEECCCC-ccCCcCcc---c-c-CcccEEEccCC-ccCCChh-h------cCcccccEEECCCCc
Confidence                    67899999999975 66776544   2 2 88999999988 5666542 2      468888888888776


Q ss_pred             ccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe
Q 039042          287 IITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE  335 (526)
Q Consensus       287 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~  335 (526)
                      +.. +.  +...+++|++|++++|..-.   .  ..+..+++|+.|++.
T Consensus       140 i~~-~~--~l~~l~~L~~L~L~~N~i~~---~--~~l~~l~~L~~L~l~  180 (263)
T 1xeu_A          140 LKS-IV--MLGFLSKLEVLDLHGNEITN---T--GGLTRLKKVNWIDLT  180 (263)
T ss_dssp             CCB-CG--GGGGCTTCCEEECTTSCCCB---C--TTSTTCCCCCEEEEE
T ss_pred             CCC-Ch--HHccCCCCCEEECCCCcCcc---h--HHhccCCCCCEEeCC
Confidence            632 21  33456788888887765433   2  355667777777776

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.06  E-value=6.4e-10  Score=115.87  Aligned_cols=113  Identities=21%  Similarity=0.224  Sum_probs=70.8

Q ss_pred             CcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccc
Q 039042          156 QNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFC  235 (526)
Q Consensus       156 ~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~  235 (526)
                      .+++.|++++|. ++.+ |..+     +++|++|++++| .+..+| .            .+++|++|+++++ .++.+|
T Consensus        59 ~~L~~L~Ls~n~-L~~l-p~~l-----~~~L~~L~Ls~N-~l~~ip-~------------~l~~L~~L~Ls~N-~l~~ip  116 (571)
T 3cvr_A           59 NQFSELQLNRLN-LSSL-PDNL-----PPQITVLEITQN-ALISLP-E------------LPASLEYLDACDN-RLSTLP  116 (571)
T ss_dssp             TTCSEEECCSSC-CSCC-CSCC-----CTTCSEEECCSS-CCSCCC-C------------CCTTCCEEECCSS-CCSCCC
T ss_pred             CCccEEEeCCCC-CCcc-CHhH-----cCCCCEEECcCC-CCcccc-c------------ccCCCCEEEccCC-CCCCcc
Confidence            478888888864 5554 5432     367888888887 565554 2            3677888888774 555554


Q ss_pred             cCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCC
Q 039042          236 TGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVD  311 (526)
Q Consensus       236 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  311 (526)
                      ..    .  .+|++|++++| .++.+|.         .+++|+.|++++|.+.    .+|. .+++|++|++++|.
T Consensus       117 ~l----~--~~L~~L~Ls~N-~l~~lp~---------~l~~L~~L~Ls~N~l~----~lp~-~l~~L~~L~Ls~N~  171 (571)
T 3cvr_A          117 EL----P--ASLKHLDVDNN-QLTMLPE---------LPALLEYINADNNQLT----MLPE-LPTSLEVLSVRNNQ  171 (571)
T ss_dssp             CC----C--TTCCEEECCSS-CCSCCCC---------CCTTCCEEECCSSCCS----CCCC-CCTTCCEEECCSSC
T ss_pred             hh----h--cCCCEEECCCC-cCCCCCC---------cCccccEEeCCCCccC----cCCC-cCCCcCEEECCCCC
Confidence            31    1  27778887777 4555443         3567777777766552    2333 45666777766654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.06  E-value=3.3e-10  Score=106.69  Aligned_cols=166  Identities=14%  Similarity=0.126  Sum_probs=99.4

Q ss_pred             ccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccccccchhhhhhh
Q 039042           51 EDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEKL  130 (526)
Q Consensus        51 ~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~l~~L  130 (526)
                      +.+..+++..+.+..++   ....+++|++|++++|.....|.  +.                            .+++|
T Consensus        19 ~~l~~l~l~~~~i~~~~---~~~~l~~L~~L~l~~n~i~~l~~--l~----------------------------~l~~L   65 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQSLAG--MQ----------------------------FFTNL   65 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE---CHHHHTTCSEEECTTSCCCCCTT--GG----------------------------GCTTC
T ss_pred             HHHHHHHhcCCCccccc---chhhcCcCcEEECcCCCcccchH--Hh----------------------------hCCCC
Confidence            34445555555555544   23467788888888776443331  21                            16677


Q ss_pred             hhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhc
Q 039042          131 EKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEER  210 (526)
Q Consensus       131 ~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~  210 (526)
                      ++|++++|.++.+-.      +..+++|++|++++|. ++.+ |. +   .. ++|++|++++| .+..++.        
T Consensus        66 ~~L~L~~N~i~~~~~------l~~l~~L~~L~L~~N~-l~~l-~~-~---~~-~~L~~L~L~~N-~l~~~~~--------  123 (263)
T 1xeu_A           66 KELHLSHNQISDLSP------LKDLTKLEELSVNRNR-LKNL-NG-I---PS-ACLSRLFLDNN-ELRDTDS--------  123 (263)
T ss_dssp             CEEECCSSCCCCCGG------GTTCSSCCEEECCSSC-CSCC-TT-C---CC-SSCCEEECCSS-CCSBSGG--------
T ss_pred             CEEECCCCccCCChh------hccCCCCCEEECCCCc-cCCc-Cc-c---cc-CcccEEEccCC-ccCCChh--------
Confidence            777777776665421      3467777888887763 4443 32 1   13 67777777777 4544421        


Q ss_pred             ccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccc
Q 039042          211 KNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYI  287 (526)
Q Consensus       211 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  287 (526)
                         +..+++|++|+++++ .++.++ .   +..+++|++|++++| .+..+ ..+      ..+++|+.|++++|.+
T Consensus       124 ---l~~l~~L~~L~Ls~N-~i~~~~-~---l~~l~~L~~L~L~~N-~i~~~-~~l------~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          124 ---LIHLKNLEILSIRNN-KLKSIV-M---LGFLSKLEVLDLHGN-EITNT-GGL------TRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             ---GTTCTTCCEEECTTS-CCCBCG-G---GGGCTTCCEEECTTS-CCCBC-TTS------TTCCCCCEEEEEEEEE
T ss_pred             ---hcCcccccEEECCCC-cCCCCh-H---HccCCCCCEEECCCC-cCcch-HHh------ccCCCCCEEeCCCCcc
Confidence               256777777777764 455553 2   556777777777777 45544 222      3567777777776654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.05  E-value=6.6e-10  Score=101.66  Aligned_cols=133  Identities=11%  Similarity=0.065  Sum_probs=72.8

Q ss_pred             hhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchh
Q 039042          128 EKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQE  207 (526)
Q Consensus       128 ~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~  207 (526)
                      ..+++|++++|.++.+.....   +..+++|++|++++|. ++.+.+..+.   .+++|++|++++| .+..++...   
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~---~~~l~~L~~L~L~~N~-i~~i~~~~~~---~l~~L~~L~Ls~N-~l~~~~~~~---  100 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGI---FKKLPQLRKINFSNNK-ITDIEEGAFE---GASGVNEILLTSN-RLENVQHKM---  100 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCC---GGGCTTCCEEECCSSC-CCEECTTTTT---TCTTCCEEECCSS-CCCCCCGGG---
T ss_pred             CCCCEEEcCCCcCCccCchhh---hccCCCCCEEECCCCc-CCEECHHHhC---CCCCCCEEECCCC-ccCccCHhH---
Confidence            345667777776654421111   3466777777777653 4444443433   5677777777776 444443321   


Q ss_pred             hhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042          208 EERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY  286 (526)
Q Consensus       208 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  286 (526)
                            +..+++|++|+++++ .+..++...  +..+++|++|+++++ +++.+++..+     ..+++|+.|++++|.
T Consensus       101 ------~~~l~~L~~L~Ls~N-~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~~~~~-----~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          101 ------FKGLESLKTLMLRSN-RITCVGNDS--FIGLSSVRLLSLYDN-QITTVAPGAF-----DTLHSLSTLNLLANP  164 (220)
T ss_dssp             ------GTTCSSCCEEECTTS-CCCCBCTTS--STTCTTCSEEECTTS-CCCCBCTTTT-----TTCTTCCEEECCSCC
T ss_pred             ------hcCCcCCCEEECCCC-cCCeECHhH--cCCCccCCEEECCCC-cCCEECHHHh-----cCCCCCCEEEecCcC
Confidence                  145667777777663 445543322  556667777777666 4555533322     245666666666443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.04  E-value=1.1e-09  Score=106.86  Aligned_cols=100  Identities=14%  Similarity=0.079  Sum_probs=61.8

Q ss_pred             CCCccEEEEee-ccccccCCCcCccccccceEEEeccCceeeccccccccCccc-EEEEeccCCccccc-CCCccCCCcC
Q 039042          326 FPTLKVLQIEG-YSDWLPKEKVENGMEVIIRRVFRCYDLKYILKQESSIMNNLV-ILHVTNCHRLINLV-PSSTSFQNLT  402 (526)
Q Consensus       326 l~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~l~~~~~~~~~~l~~L~-~L~l~~c~~l~~l~-~~~~~~~~L~  402 (526)
                      +++|+.+++.. ....++...|  ..+++|+++.+.+++..++...|..+.+|+ .+++.+  .+..++ ..+..+++|+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF--~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTF--AQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTT--TTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred             cCCCeEEECCCCCcceecHhhh--hCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence            56666666662 3444444444  556667777776447777777777777777 777765  444443 2455677777


Q ss_pred             EEEEccCCCcccccchHHHhhcccccEEE
Q 039042          403 SLEISYCNGLKNVLTFSIAKTLVRLREMK  431 (526)
Q Consensus       403 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~  431 (526)
                      .+++... +++.++. ..+..+++|+.++
T Consensus       301 ~l~l~~n-~i~~I~~-~aF~~~~~L~~ly  327 (329)
T 3sb4_A          301 YVLATGD-KITTLGD-ELFGNGVPSKLIY  327 (329)
T ss_dssp             EEEECSS-CCCEECT-TTTCTTCCCCEEE
T ss_pred             EEEeCCC-ccCccch-hhhcCCcchhhhc
Confidence            7777543 5555543 2455667777765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.04  E-value=4.8e-10  Score=110.88  Aligned_cols=137  Identities=19%  Similarity=0.219  Sum_probs=84.2

Q ss_pred             hhhhhhhcccccccccccccccccccc-cCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecc
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTC-GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDN  205 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~-~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~  205 (526)
                      ...++.|+|++|.++.+....    +. .+++|++|+|++| .++.+.|..+.   .+++|++|++++| .+..++... 
T Consensus        38 ~~~l~~L~Ls~N~l~~l~~~~----~~~~l~~L~~L~L~~N-~i~~i~~~~~~---~l~~L~~L~Ls~N-~l~~~~~~~-  107 (361)
T 2xot_A           38 PSYTALLDLSHNNLSRLRAEW----TPTRLTNLHSLLLSHN-HLNFISSEAFV---PVPNLRYLDLSSN-HLHTLDEFL-  107 (361)
T ss_dssp             CTTCSEEECCSSCCCEECTTS----SSSCCTTCCEEECCSS-CCCEECTTTTT---TCTTCCEEECCSS-CCCEECTTT-
T ss_pred             CCCCCEEECCCCCCCccChhh----hhhcccccCEEECCCC-cCCccChhhcc---CCCCCCEEECCCC-cCCcCCHHH-
Confidence            445777888888777653222    22 5778888888775 45555444444   6778888888887 566554422 


Q ss_pred             hhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeec
Q 039042          206 QEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAE  285 (526)
Q Consensus       206 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  285 (526)
                              +..+++|++|+++++ .+..+....  +..+++|+.|++++| .+..++...+.+  ...+++|+.|++++|
T Consensus       108 --------~~~l~~L~~L~L~~N-~i~~~~~~~--~~~l~~L~~L~L~~N-~l~~l~~~~~~~--~~~l~~L~~L~L~~N  173 (361)
T 2xot_A          108 --------FSDLQALEVLLLYNN-HIVVVDRNA--FEDMAQLQKLYLSQN-QISRFPVELIKD--GNKLPKLMLLDLSSN  173 (361)
T ss_dssp             --------TTTCTTCCEEECCSS-CCCEECTTT--TTTCTTCCEEECCSS-CCCSCCGGGTC------CTTCCEEECCSS
T ss_pred             --------hCCCcCCCEEECCCC-cccEECHHH--hCCcccCCEEECCCC-cCCeeCHHHhcC--cccCCcCCEEECCCC
Confidence                    146777888888764 455553332  667777888888777 566665543210  013667777777766


Q ss_pred             cc
Q 039042          286 YI  287 (526)
Q Consensus       286 ~~  287 (526)
                      .+
T Consensus       174 ~l  175 (361)
T 2xot_A          174 KL  175 (361)
T ss_dssp             CC
T ss_pred             CC
Confidence            55

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.04  E-value=6.8e-10  Score=102.28  Aligned_cols=109  Identities=19%  Similarity=0.147  Sum_probs=52.8

Q ss_pred             CCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCcccccc
Q 039042          155 IQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSF  234 (526)
Q Consensus       155 l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~  234 (526)
                      .++|++|++++|. ++.+.|..+.   .+++|++|++++| .+..++...         +..+++|++|+++++ .++.+
T Consensus        39 ~~~L~~L~Ls~n~-i~~~~~~~~~---~l~~L~~L~L~~N-~l~~i~~~~---------~~~l~~L~~L~Ls~N-~l~~l  103 (229)
T 3e6j_A           39 PTNAQILYLHDNQ-ITKLEPGVFD---SLINLKELYLGSN-QLGALPVGV---------FDSLTQLTVLDLGTN-QLTVL  103 (229)
T ss_dssp             CTTCSEEECCSSC-CCCCCTTTTT---TCTTCCEEECCSS-CCCCCCTTT---------TTTCTTCCEEECCSS-CCCCC
T ss_pred             CCCCCEEEcCCCc-cCccCHHHhh---CccCCcEEECCCC-CCCCcChhh---------cccCCCcCEEECCCC-cCCcc
Confidence            3555666665543 3333343333   4555666666555 344333221         134555666666553 44444


Q ss_pred             ccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccc
Q 039042          235 CTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYI  287 (526)
Q Consensus       235 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  287 (526)
                      +...  +..+++|++|+++++ ++..+|..+      ..+++|++|++++|.+
T Consensus       104 ~~~~--~~~l~~L~~L~Ls~N-~l~~lp~~~------~~l~~L~~L~L~~N~l  147 (229)
T 3e6j_A          104 PSAV--FDRLVHLKELFMCCN-KLTELPRGI------ERLTHLTHLALDQNQL  147 (229)
T ss_dssp             CTTT--TTTCTTCCEEECCSS-CCCSCCTTG------GGCTTCSEEECCSSCC
T ss_pred             ChhH--hCcchhhCeEeccCC-cccccCccc------ccCCCCCEEECCCCcC
Confidence            4331  345555666666555 444444433      2455555555554444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.03  E-value=9.1e-10  Score=100.72  Aligned_cols=150  Identities=14%  Similarity=0.102  Sum_probs=91.6

Q ss_pred             hhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhc
Q 039042          131 EKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEER  210 (526)
Q Consensus       131 ~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~  210 (526)
                      +.++.++++++.+    |..   -.++++.|+++++ .++.+.+..+.   .+++|++|++++| .+..+....      
T Consensus        14 ~~v~c~~~~l~~i----P~~---l~~~l~~L~l~~n-~i~~i~~~~~~---~l~~L~~L~Ls~N-~i~~~~~~~------   75 (220)
T 2v9t_B           14 NIVDCRGKGLTEI----PTN---LPETITEIRLEQN-TIKVIPPGAFS---PYKKLRRIDLSNN-QISELAPDA------   75 (220)
T ss_dssp             TEEECTTSCCSSC----CSS---CCTTCCEEECCSS-CCCEECTTSST---TCTTCCEEECCSS-CCCEECTTT------
T ss_pred             CEEEcCCCCcCcC----CCc---cCcCCCEEECCCC-cCCCcCHhHhh---CCCCCCEEECCCC-cCCCcCHHH------
Confidence            4556666666655    433   3467888888886 45555444444   6888888888887 555553221      


Q ss_pred             ccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecccccc
Q 039042          211 KNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITN  290 (526)
Q Consensus       211 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  290 (526)
                         +..+++|++|+++++ .++.++...  +..+++|++|+++++ .+..+++..+     ..+++|+.|++++|.+.. 
T Consensus        76 ---~~~l~~L~~L~Ls~N-~l~~l~~~~--f~~l~~L~~L~L~~N-~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~-  142 (220)
T 2v9t_B           76 ---FQGLRSLNSLVLYGN-KITELPKSL--FEGLFSLQLLLLNAN-KINCLRVDAF-----QDLHNLNLLSLYDNKLQT-  142 (220)
T ss_dssp             ---TTTCSSCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSS-CCCCCCTTTT-----TTCTTCCEEECCSSCCSC-
T ss_pred             ---hhCCcCCCEEECCCC-cCCccCHhH--ccCCCCCCEEECCCC-CCCEeCHHHc-----CCCCCCCEEECCCCcCCE-
Confidence               156788888888874 566666542  456788888888877 5666554433     256777777777665532 


Q ss_pred             ceeccccccccccEEEeeeCC
Q 039042          291 KFIFSEDLLCKLKCLDVEFVD  311 (526)
Q Consensus       291 ~~~~~~~~~~~L~~L~l~~~~  311 (526)
                      +..-....+++|++|++++++
T Consensus       143 ~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          143 IAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CCTTTTTTCTTCCEEECCSSC
T ss_pred             ECHHHHhCCCCCCEEEeCCCC
Confidence            111112234566666666554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.03  E-value=1.2e-09  Score=113.68  Aligned_cols=172  Identities=16%  Similarity=0.166  Sum_probs=101.9

Q ss_pred             cccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceecccc
Q 039042          185 RLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKR  264 (526)
Q Consensus       185 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~  264 (526)
                      +|+.|++++| .+..+|..            -+++|++|+++++ .++.+| .     .+++|++|++++| .++.+|. 
T Consensus        60 ~L~~L~Ls~n-~L~~lp~~------------l~~~L~~L~Ls~N-~l~~ip-~-----~l~~L~~L~Ls~N-~l~~ip~-  117 (571)
T 3cvr_A           60 QFSELQLNRL-NLSSLPDN------------LPPQITVLEITQN-ALISLP-E-----LPASLEYLDACDN-RLSTLPE-  117 (571)
T ss_dssp             TCSEEECCSS-CCSCCCSC------------CCTTCSEEECCSS-CCSCCC-C-----CCTTCCEEECCSS-CCSCCCC-
T ss_pred             CccEEEeCCC-CCCccCHh------------HcCCCCEEECcCC-CCcccc-c-----ccCCCCEEEccCC-CCCCcch-
Confidence            7888888887 56655543            2477888888874 566776 3     4788888888888 6666654 


Q ss_pred             ccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccC
Q 039042          265 TTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPK  343 (526)
Q Consensus       265 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~  343 (526)
                      +      ..  +|++|++++|.+..    +|. .+++|+.|++++|. ++  .+|.    .+++|+.|+++.+ ...+|.
T Consensus       118 l------~~--~L~~L~Ls~N~l~~----lp~-~l~~L~~L~Ls~N~-l~--~lp~----~l~~L~~L~Ls~N~L~~lp~  177 (571)
T 3cvr_A          118 L------PA--SLKHLDVDNNQLTM----LPE-LPALLEYINADNNQ-LT--MLPE----LPTSLEVLSVRNNQLTFLPE  177 (571)
T ss_dssp             C------CT--TCCEEECCSSCCSC----CCC-CCTTCCEEECCSSC-CS--CCCC----CCTTCCEEECCSSCCSCCCC
T ss_pred             h------hc--CCCEEECCCCcCCC----CCC-cCccccEEeCCCCc-cC--cCCC----cCCCcCEEECCCCCCCCcch
Confidence            2      12  78888888776532    454 56778888887765 33  2443    3566777776633 333332


Q ss_pred             CCcCccccccceEEEec-cCceeeccccccccCcc-------cEEEEeccCCcccccCCCccCCCcCEEEEccC
Q 039042          344 EKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNL-------VILHVTNCHRLINLVPSSTSFQNLTSLEISYC  409 (526)
Q Consensus       344 ~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L-------~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c  409 (526)
                        +  .  ++|++|+++ +.+..++.  +..  +|       +.|++++| .+..+|..+..+++|+.|+++++
T Consensus       178 --l--~--~~L~~L~Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N  240 (571)
T 3cvr_A          178 --L--P--ESLEALDVSTNLLESLPA--VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDN  240 (571)
T ss_dssp             --C--C--TTCCEEECCSSCCSSCCC--CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSS
T ss_pred             --h--h--CCCCEEECcCCCCCchhh--HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCC
Confidence              1  1  556666666 55555443  221  44       55555554 33344444444555555555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.03  E-value=6e-10  Score=101.00  Aligned_cols=134  Identities=15%  Similarity=0.140  Sum_probs=70.7

Q ss_pred             ccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCceeeccccc
Q 039042          294 FSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQES  371 (526)
Q Consensus       294 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~  371 (526)
                      +|....++|++|+++++.. +  .++...+..+++|++|++..+ ...++...+  ..+++|++|++. +.+..+++..+
T Consensus        22 ~p~~~~~~l~~L~l~~n~l-~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~   96 (208)
T 2o6s_A           22 VPTGIPAQTTYLDLETNSL-K--SLPNGVFDELTSLTQLYLGGNKLQSLPNGVF--NKLTSLTYLNLSTNQLQSLPNGVF   96 (208)
T ss_dssp             CCSCCCTTCSEEECCSSCC-C--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CCCCCCCCCcEEEcCCCcc-C--cCChhhhcccccCcEEECCCCccCccChhhc--CCCCCcCEEECCCCcCCccCHhHh
Confidence            4444445666666666532 2  234444555666666666632 222332222  344566666666 55665555555


Q ss_pred             cccCcccEEEEeccCCcccccCC-CccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccc
Q 039042          372 SIMNNLVILHVTNCHRLINLVPS-STSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESC  435 (526)
Q Consensus       372 ~~l~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c  435 (526)
                      ..+++|++|+++++. +..++.. +..+++|++|+++++ .++.++. ..+..+++|+.|+++++
T Consensus        97 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A           97 DKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN-QLKSVPD-GVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSC
T ss_pred             cCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC-ccceeCH-HHhccCCCccEEEecCC
Confidence            666666666666653 3333332 345666666666665 4444432 23445566666666664

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.00  E-value=1.5e-09  Score=107.26  Aligned_cols=169  Identities=19%  Similarity=0.179  Sum_probs=124.6

Q ss_pred             hhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhc
Q 039042          131 EKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEER  210 (526)
Q Consensus       131 ~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~  210 (526)
                      +.+++++++++.+    |.+   -.++++.|+|++| .++.+.+..+..  .+++|++|++++| .+..++...      
T Consensus        21 ~~l~c~~~~l~~i----P~~---~~~~l~~L~Ls~N-~l~~l~~~~~~~--~l~~L~~L~L~~N-~i~~i~~~~------   83 (361)
T 2xot_A           21 NILSCSKQQLPNV----PQS---LPSYTALLDLSHN-NLSRLRAEWTPT--RLTNLHSLLLSHN-HLNFISSEA------   83 (361)
T ss_dssp             TEEECCSSCCSSC----CSS---CCTTCSEEECCSS-CCCEECTTSSSS--CCTTCCEEECCSS-CCCEECTTT------
T ss_pred             CEEEeCCCCcCcc----Ccc---CCCCCCEEECCCC-CCCccChhhhhh--cccccCEEECCCC-cCCccChhh------
Confidence            5677888878766    433   4567999999997 566665554432  6899999999998 677776432      


Q ss_pred             ccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecccccc
Q 039042          211 KNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITN  290 (526)
Q Consensus       211 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  290 (526)
                         +..+++|++|+++++ .+..++...  +..+++|++|++++| .+..+++..+     ..+++|++|++++|.+.. 
T Consensus        84 ---~~~l~~L~~L~Ls~N-~l~~~~~~~--~~~l~~L~~L~L~~N-~i~~~~~~~~-----~~l~~L~~L~L~~N~l~~-  150 (361)
T 2xot_A           84 ---FVPVPNLRYLDLSSN-HLHTLDEFL--FSDLQALEVLLLYNN-HIVVVDRNAF-----EDMAQLQKLYLSQNQISR-  150 (361)
T ss_dssp             ---TTTCTTCCEEECCSS-CCCEECTTT--TTTCTTCCEEECCSS-CCCEECTTTT-----TTCTTCCEEECCSSCCCS-
T ss_pred             ---ccCCCCCCEEECCCC-cCCcCCHHH--hCCCcCCCEEECCCC-cccEECHHHh-----CCcccCCEEECCCCcCCe-
Confidence               257899999999985 677776543  678999999999998 5666655433     378999999999887642 


Q ss_pred             ceeccc------cccccccEEEeeeCCcccccccchhHhhcCCCc--cEEEEe
Q 039042          291 KFIFSE------DLLCKLKCLDVEFVDELTTILSLDDFLQRFPTL--KVLQIE  335 (526)
Q Consensus       291 ~~~~~~------~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L--~~L~l~  335 (526)
                         +|.      ..+++|+.|+++++. ++  .++...+..++.+  +.|.+.
T Consensus       151 ---l~~~~~~~~~~l~~L~~L~L~~N~-l~--~l~~~~~~~l~~~~l~~l~l~  197 (361)
T 2xot_A          151 ---FPVELIKDGNKLPKLMLLDLSSNK-LK--KLPLTDLQKLPAWVKNGLYLH  197 (361)
T ss_dssp             ---CCGGGTC----CTTCCEEECCSSC-CC--CCCHHHHHHSCHHHHTTEECC
T ss_pred             ---eCHHHhcCcccCCcCCEEECCCCC-CC--ccCHHHhhhccHhhcceEEec
Confidence               333      247899999999865 44  4676677888774  778887

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.97  E-value=2.2e-09  Score=98.11  Aligned_cols=108  Identities=10%  Similarity=0.083  Sum_probs=52.6

Q ss_pred             hhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCC
Q 039042          323 LQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQN  400 (526)
Q Consensus       323 l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~  400 (526)
                      +..+++|+.|++..+ ...++...+  ..+++|++|+++ +.+..+++..+..+++|++|+++++..-...+..+..+++
T Consensus        53 ~~~l~~L~~L~L~~N~i~~i~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  130 (220)
T 2v70_A           53 FKKLPQLRKINFSNNKITDIEEGAF--EGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS  130 (220)
T ss_dssp             GGGCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT
T ss_pred             hccCCCCCEEECCCCcCCEECHHHh--CCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc
Confidence            344455555555422 222222222  344555555555 5555555555555566666666655332222334445556


Q ss_pred             cCEEEEccCCCcccccchHHHhhcccccEEEEcc
Q 039042          401 LTSLEISYCNGLKNVLTFSIAKTLVRLREMKIES  434 (526)
Q Consensus       401 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~  434 (526)
                      |+.|+++++ +++.+++ ..+..+++|+.|++++
T Consensus       131 L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~  162 (220)
T 2v70_A          131 VRLLSLYDN-QITTVAP-GAFDTLHSLSTLNLLA  162 (220)
T ss_dssp             CSEEECTTS-CCCCBCT-TTTTTCTTCCEEECCS
T ss_pred             CCEEECCCC-cCCEECH-HHhcCCCCCCEEEecC
Confidence            666666554 3444422 2344555666666655

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.91  E-value=5.1e-09  Score=102.10  Aligned_cols=292  Identities=11%  Similarity=-0.023  Sum_probs=168.8

Q ss_pred             hhhhhhhccccc-cccccccccccccccc-CCcccEEEeccCCCce-ecCCcccccccccccccEEeeeccccccEEEee
Q 039042          127 LEKLEKLELRSI-NIERIWRNQVAAMTCG-IQNLTHLTLYNCMNLR-CLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVV  203 (526)
Q Consensus       127 l~~L~~L~L~~~-~l~~~~~~~~~~~~~~-l~~L~~L~L~~c~~l~-~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~  203 (526)
                      +.+++.|.++++ ...++..      +.. +++|++|+|+++.... .. +..     .++.++.+.+..+    .++..
T Consensus        24 ~~~l~~L~l~g~i~~~~~~~------l~~~l~~L~~LdLs~n~i~~~~~-~~~-----~~~~~~~~~~~~~----~I~~~   87 (329)
T 3sb4_A           24 ANSITHLTLTGKLNAEDFRH------LRDEFPSLKVLDISNAEIKMYSG-KAG-----TYPNGKFYIYMAN----FVPAY   87 (329)
T ss_dssp             HHHCSEEEEEEEECHHHHHH------HHHSCTTCCEEEEEEEEECCEEE-SSS-----SSGGGCCEEECTT----EECTT
T ss_pred             hCceeEEEEeccccHHHHHH------HHHhhccCeEEecCcceeEEecC-ccc-----ccccccccccccc----ccCHH
Confidence            778888888876 2222110      123 7889999998875331 11 111     2333344444333    23322


Q ss_pred             cchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEe
Q 039042          204 DNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVD  283 (526)
Q Consensus       204 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~  283 (526)
                      .+... ......++++|+++++.+  .++.++...  +..|++|+.|.+.++ .+..++...+.     .+.++..+...
T Consensus        88 aF~~~-~~~~~~g~~~L~~l~L~~--~i~~I~~~a--F~~~~~L~~l~l~~n-~i~~i~~~aF~-----~~~~l~~l~~~  156 (329)
T 3sb4_A           88 AFSNV-VNGVTKGKQTLEKVILSE--KIKNIEDAA--FKGCDNLKICQIRKK-TAPNLLPEALA-----DSVTAIFIPLG  156 (329)
T ss_dssp             TTEEE-ETTEEEECTTCCC-CBCT--TCCEECTTT--TTTCTTCCEEEBCCS-SCCEECTTSSC-----TTTCEEEECTT
T ss_pred             Hhccc-ccccccccCCCcEEECCc--cccchhHHH--hhcCcccceEEcCCC-Cccccchhhhc-----CCCceEEecCc
Confidence            11000 000001288899999986  677776654  778899999999877 45556554433     34445444433


Q ss_pred             eccc---cccceecccccccccc-EEEeeeCCcccccccchhHhh---cCCCccEEEEeeccccccCCCcCccccccceE
Q 039042          284 AEYI---ITNKFIFSEDLLCKLK-CLDVEFVDELTTILSLDDFLQ---RFPTLKVLQIEGYSDWLPKEKVENGMEVIIRR  356 (526)
Q Consensus       284 ~~~~---~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~~~~l~---~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  356 (526)
                      ....   ...+.......+..|+ .+.+.....+.     ...+.   ...+++.+.+...........+ ...+++|++
T Consensus       157 ~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l-~~~~~~L~~  230 (329)
T 3sb4_A          157 SSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLE-----DEIMKAGLQPRDINFLTIEGKLDNADFKLI-RDYMPNLVS  230 (329)
T ss_dssp             CTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHH-----HHHHHTTCCGGGCSEEEEEECCCHHHHHHH-HHHCTTCCE
T ss_pred             chhhhhccccccccccccccccceeEEecCCCcHH-----HHHhhcccCccccceEEEeeeecHHHHHHH-HHhcCCCeE
Confidence            2111   0111222223444555 44454433322     22222   2445566666532000000000 023689999


Q ss_pred             EEec-cCceeeccccccccCcccEEEEeccCCcccccC-CCccCCCcC-EEEEccCCCcccccchHHHhhcccccEEEEc
Q 039042          357 VFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVP-SSTSFQNLT-SLEISYCNGLKNVLTFSIAKTLVRLREMKIE  433 (526)
Q Consensus       357 L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~-~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~  433 (526)
                      +++. +.+..++...|..+.+|+.+++.+.  +..++. .+..+++|+ .+++.+  +++.++. ..+..+++|+.+++.
T Consensus       231 l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~-~aF~~c~~L~~l~l~  305 (329)
T 3sb4_A          231 LDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF-GAFMGCDNLRYVLAT  305 (329)
T ss_dssp             EECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT-TTTTTCTTEEEEEEC
T ss_pred             EECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch-hhhhCCccCCEEEeC
Confidence            9999 7899999999999999999999875  666654 456788999 999987  6777653 366789999999997


Q ss_pred             cccccceecccccCCcccccCCCeeeeCccCeEec
Q 039042          434 SCAMITEIVLADDDDDHDAAKDEVIAFSELNELKL  468 (526)
Q Consensus       434 ~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  468 (526)
                      . +.+..+...           ++..+++|+.++.
T Consensus       306 ~-n~i~~I~~~-----------aF~~~~~L~~ly~  328 (329)
T 3sb4_A          306 G-DKITTLGDE-----------LFGNGVPSKLIYK  328 (329)
T ss_dssp             S-SCCCEECTT-----------TTCTTCCCCEEEC
T ss_pred             C-CccCccchh-----------hhcCCcchhhhcc
Confidence            6 457777653           3446788998864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.91  E-value=4.5e-11  Score=125.07  Aligned_cols=123  Identities=12%  Similarity=0.068  Sum_probs=73.6

Q ss_pred             cccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceecccc
Q 039042          185 RLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKR  264 (526)
Q Consensus       185 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~  264 (526)
                      .|+.|++++| .+..+|. +          +.+++|++|+++++ .++.+|..   ++.+++|+.|++++| .++.+| .
T Consensus       442 ~L~~L~Ls~n-~l~~lp~-~----------~~l~~L~~L~Ls~N-~l~~lp~~---~~~l~~L~~L~Ls~N-~l~~lp-~  503 (567)
T 1dce_A          442 DVRVLHLAHK-DLTVLCH-L----------EQLLLVTHLDLSHN-RLRALPPA---LAALRCLEVLQASDN-ALENVD-G  503 (567)
T ss_dssp             TCSEEECTTS-CCSSCCC-G----------GGGTTCCEEECCSS-CCCCCCGG---GGGCTTCCEEECCSS-CCCCCG-G
T ss_pred             CceEEEecCC-CCCCCcC-c----------cccccCcEeecCcc-cccccchh---hhcCCCCCEEECCCC-CCCCCc-c
Confidence            4777888877 5555543 2          56778888888764 56666655   777888888888877 566665 3


Q ss_pred             ccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCcccccccc--hhHhhcCCCccEEE
Q 039042          265 TTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSL--DDFLQRFPTLKVLQ  333 (526)
Q Consensus       265 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~l~~l~~L~~L~  333 (526)
                      +      ..+++|+.|++++|.+......-....+++|+.|++++|+.-.  ..+  ...+..+|+|+.|+
T Consensus       504 l------~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~--~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          504 V------ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ--EEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             G------TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG--SSSCTTHHHHHCTTCSEEE
T ss_pred             c------CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC--CccHHHHHHHHCcccCccC
Confidence            3      3577777777776665321001112356667777776655332  111  12233456666553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.89  E-value=1.5e-09  Score=94.75  Aligned_cols=111  Identities=22%  Similarity=0.220  Sum_probs=59.0

Q ss_pred             hhhhhhhcccccccc--cccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccE-EEee
Q 039042          127 LEKLEKLELRSINIE--RIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEE-LIVV  203 (526)
Q Consensus       127 l~~L~~L~L~~~~l~--~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~-l~~~  203 (526)
                      .++|+.|++++|.++  .+    |.. +..+++|++|++++|. ++.+  ..   ++.+++|++|++++| .+.. ++..
T Consensus        23 ~~~L~~L~l~~n~l~~~~i----~~~-~~~l~~L~~L~l~~n~-l~~~--~~---~~~l~~L~~L~Ls~N-~l~~~~~~~   90 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKI----EGL-TAEFVNLEFLSLINVG-LISV--SN---LPKLPKLKKLELSEN-RIFGGLDML   90 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBC----SSC-CGGGGGCCEEEEESSC-CCCC--SS---CCCCSSCCEEEEESC-CCCSCCCHH
T ss_pred             cccCCEEECCCCCCChhhH----HHH-HHhCCCCCEEeCcCCC-CCCh--hh---hccCCCCCEEECcCC-cCchHHHHH
Confidence            456777777777665  22    221 3456677777777654 3332  22   235666777777666 3333 2222


Q ss_pred             cchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceecc
Q 039042          204 DNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRF  262 (526)
Q Consensus       204 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~  262 (526)
                      +          ..+++|++|+++++ .++.++.. ..+..+++|++|++++| .+..++
T Consensus        91 ~----------~~l~~L~~L~Ls~N-~l~~~~~~-~~l~~l~~L~~L~l~~N-~l~~~~  136 (168)
T 2ell_A           91 A----------EKLPNLTHLNLSGN-KLKDISTL-EPLKKLECLKSLDLFNC-EVTNLN  136 (168)
T ss_dssp             H----------HHCTTCCEEECBSS-SCCSSGGG-GGGSSCSCCCEEECCSS-GGGTST
T ss_pred             H----------hhCCCCCEEeccCC-ccCcchhH-HHHhcCCCCCEEEeeCC-cCcchH
Confidence            1          24666666666654 45554321 11555666666666666 344443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.85  E-value=1.9e-08  Score=87.60  Aligned_cols=138  Identities=18%  Similarity=0.181  Sum_probs=96.7

Q ss_pred             cccceEEEec-cCce--eeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccc
Q 039042          351 EVIIRRVFRC-YDLK--YILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRL  427 (526)
Q Consensus       351 ~~~L~~L~l~-~~l~--~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L  427 (526)
                      .++|++|++. +.+.  .+ +..+..+++|+.|++++|. +..+ ..+..+++|++|+++++ .+.... +.....+++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i-~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L   97 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKI-EGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSEN-RIFGGL-DMLAEKLPNL   97 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBC-SSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESC-CCCSCC-CHHHHHCTTC
T ss_pred             cccCCEEECCCCCCChhhH-HHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCC-cCchHH-HHHHhhCCCC
Confidence            3567777777 5565  44 3446778899999999886 5555 56778899999999987 566532 2566678999


Q ss_pred             cEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCC--CCccccCCCccEEeEecCCCccccCC
Q 039042          428 REMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYS--GNRALNFPSLERLLVDDCTNMKGFSR  505 (526)
Q Consensus       428 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~~~L~~L~l~~C~~l~~l~~  505 (526)
                      +.|++++| .+..++..          ..+..+++|++|+++++ .+..++.  ...+..+++|++|++++|. +..+|.
T Consensus        98 ~~L~Ls~N-~l~~~~~~----------~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~  164 (168)
T 2ell_A           98 THLNLSGN-KLKDISTL----------EPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD  164 (168)
T ss_dssp             CEEECBSS-SCCSSGGG----------GGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred             CEEeccCC-ccCcchhH----------HHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence            99999986 46655421          11336789999999985 5666665  1126678999999999974 555654


Q ss_pred             C
Q 039042          506 G  506 (526)
Q Consensus       506 ~  506 (526)
                      +
T Consensus       165 ~  165 (168)
T 2ell_A          165 S  165 (168)
T ss_dssp             S
T ss_pred             c
Confidence            3

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.82  E-value=1.6e-07  Score=93.76  Aligned_cols=123  Identities=6%  Similarity=-0.030  Sum_probs=64.8

Q ss_pred             cccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-c-----ccccCCCcCccccccceEEEeccCceeecccccccc
Q 039042          301 KLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-S-----DWLPKEKVENGMEVIIRRVFRCYDLKYILKQESSIM  374 (526)
Q Consensus       301 ~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~-----~~~~~~~~~~~~~~~L~~L~l~~~l~~~~~~~~~~l  374 (526)
                      +|+.+.+..  .++  .++...+.++++|+.+.+..+ .     ..++...|  ..+++|+.+.+.+++..+....|..+
T Consensus       249 ~L~~i~lp~--~i~--~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF--~~c~~L~~l~l~~~i~~I~~~aF~~c  322 (401)
T 4fdw_A          249 GITTVKLPN--GVT--NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL--EGCPKLARFEIPESIRILGQGLLGGN  322 (401)
T ss_dssp             CCSEEEEET--TCC--EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT--TTCTTCCEECCCTTCCEECTTTTTTC
T ss_pred             CccEEEeCC--Ccc--EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh--hCCccCCeEEeCCceEEEhhhhhcCC
Confidence            455555522  222  344445566666666666522 1     12333333  55666666666655666666777777


Q ss_pred             CcccEEEEeccCCcccccC-CCccCCCcCEEEEccCCCcccccchHHHhhc-ccccEEEEcc
Q 039042          375 NNLVILHVTNCHRLINLVP-SSTSFQNLTSLEISYCNGLKNVLTFSIAKTL-VRLREMKIES  434 (526)
Q Consensus       375 ~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L~~L~i~~  434 (526)
                      .+|+.+.+...  +..+.. .+..+ +|+.+++.+. .+..++.. ....+ .+++.+++..
T Consensus       323 ~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~-~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          323 RKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGT-TPPQVFEK-VWYGFPDDITVIRVPA  379 (401)
T ss_dssp             CSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCS-SCCBCCCS-SCCCSCTTCCEEEECG
T ss_pred             CCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCC-CCcccccc-cccCCCCCccEEEeCH
Confidence            77777777432  333332 23444 6777777654 33333221 22233 3566777754

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.74  E-value=8e-09  Score=88.02  Aligned_cols=106  Identities=17%  Similarity=0.140  Sum_probs=60.8

Q ss_pred             cCCcccEEEeccCCCc-eecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCcccc
Q 039042          154 GIQNLTHLTLYNCMNL-RCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLT  232 (526)
Q Consensus       154 ~l~~L~~L~L~~c~~l-~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~  232 (526)
                      ..++|+.|++++|... .. .|..+.   .+++|++|++++| .+..+ ..          +..+++|++|+++++ .+.
T Consensus        15 ~~~~l~~L~l~~n~l~~~~-~~~~~~---~l~~L~~L~l~~n-~l~~~-~~----------~~~l~~L~~L~Ls~n-~i~   77 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGK-LEGLTD---EFEELEFLSTINV-GLTSI-AN----------LPKLNKLKKLELSDN-RVS   77 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTB-CCSCCT---TCTTCCEEECTTS-CCCCC-TT----------CCCCTTCCEEECCSS-CCC
T ss_pred             CCccCeEEEccCCcCChhH-HHHHHh---hcCCCcEEECcCC-CCCCc-hh----------hhcCCCCCEEECCCC-ccc
Confidence            4577888888887533 13 354433   6788888888877 45444 11          256777777777764 344


Q ss_pred             c-cccCcccccCCCCccEEEeccCCCceecc--ccccCCccccccCCcceEEEeecc
Q 039042          233 S-FCTGDVHMLEFPSLKELWISRCPEFMVRF--KRTTNDLTKKVFPNLEELIVDAEY  286 (526)
Q Consensus       233 ~-~~~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~  286 (526)
                      . ++..   +..+++|++|++++| .+..++  ..+      ..+++|++|++++|.
T Consensus        78 ~~~~~~---~~~l~~L~~L~ls~N-~i~~~~~~~~~------~~l~~L~~L~l~~N~  124 (149)
T 2je0_A           78 GGLEVL---AEKCPNLTHLNLSGN-KIKDLSTIEPL------KKLENLKSLDLFNCE  124 (149)
T ss_dssp             SCTHHH---HHHCTTCCEEECTTS-CCCSHHHHGGG------GGCTTCCEEECTTCG
T ss_pred             chHHHH---hhhCCCCCEEECCCC-cCCChHHHHHH------hhCCCCCEEeCcCCc
Confidence            4 3333   445677777777776 344432  221      244555555555443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.74  E-value=4.5e-09  Score=89.59  Aligned_cols=127  Identities=19%  Similarity=0.205  Sum_probs=91.6

Q ss_pred             hhhhhhhcccccccc--cccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccE-EEee
Q 039042          127 LEKLEKLELRSINIE--RIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEE-LIVV  203 (526)
Q Consensus       127 l~~L~~L~L~~~~l~--~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~-l~~~  203 (526)
                      .++|+.|++++|.++  .+    |.. +..+++|++|++++|. ++.+  ..   ++.+++|++|++++| .+.. ++..
T Consensus        16 ~~~l~~L~l~~n~l~~~~~----~~~-~~~l~~L~~L~l~~n~-l~~~--~~---~~~l~~L~~L~Ls~n-~i~~~~~~~   83 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKL----EGL-TDEFEELEFLSTINVG-LTSI--AN---LPKLNKLKKLELSDN-RVSGGLEVL   83 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBC----CSC-CTTCTTCCEEECTTSC-CCCC--TT---CCCCTTCCEEECCSS-CCCSCTHHH
T ss_pred             CccCeEEEccCCcCChhHH----HHH-HhhcCCCcEEECcCCC-CCCc--hh---hhcCCCCCEEECCCC-cccchHHHH
Confidence            688999999999887  33    222 5689999999999984 5543  23   448999999999999 4444 4332


Q ss_pred             cchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccc---cccCCccccccCCcceE
Q 039042          204 DNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFK---RTTNDLTKKVFPNLEEL  280 (526)
Q Consensus       204 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~~~~~l~~L~~L  280 (526)
                      +          ..+++|++|+++++ .+..++.. ..+..+++|++|++++| .+...+.   ..+     ..+++|+.|
T Consensus        84 ~----------~~l~~L~~L~ls~N-~i~~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~-----~~l~~L~~L  145 (149)
T 2je0_A           84 A----------EKCPNLTHLNLSGN-KIKDLSTI-EPLKKLENLKSLDLFNC-EVTNLNDYRENVF-----KLLPQLTYL  145 (149)
T ss_dssp             H----------HHCTTCCEEECTTS-CCCSHHHH-GGGGGCTTCCEEECTTC-GGGGSTTHHHHHH-----HHCTTCCEE
T ss_pred             h----------hhCCCCCEEECCCC-cCCChHHH-HHHhhCCCCCEEeCcCC-cccchHHHHHHHH-----HHCCCcccc
Confidence            2          46899999999985 56665421 12778999999999999 5666654   211     357778777


Q ss_pred             EEe
Q 039042          281 IVD  283 (526)
Q Consensus       281 ~l~  283 (526)
                      +++
T Consensus       146 ~l~  148 (149)
T 2je0_A          146 DGY  148 (149)
T ss_dssp             TTB
T ss_pred             cCC
Confidence            654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.74  E-value=3.5e-07  Score=91.39  Aligned_cols=144  Identities=10%  Similarity=-0.001  Sum_probs=83.9

Q ss_pred             cccccceEEEeccCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhccccc
Q 039042          349 GMEVIIRRVFRCYDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLR  428 (526)
Q Consensus       349 ~~~~~L~~L~l~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~  428 (526)
                      ..+..++.+.+......+....+..+..++.+...... +.  ...+..+.+|+.+.+..  +++.+.. .....+++|+
T Consensus       250 ~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~-i~--~~~F~~~~~L~~i~l~~--~i~~I~~-~aF~~c~~L~  323 (394)
T 4fs7_A          250 YGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI-VP--EKTFYGCSSLTEVKLLD--SVKFIGE-EAFESCTSLV  323 (394)
T ss_dssp             TTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE-EC--TTTTTTCTTCCEEEECT--TCCEECT-TTTTTCTTCC
T ss_pred             cccccceeEEcCCCcceeeccccccccccceeccCcee-ec--ccccccccccccccccc--ccceech-hhhcCCCCCC
Confidence            44556666666655555666666666777766664321 11  01234567777777753  3555542 2455677888


Q ss_pred             EEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCccccCCCCC
Q 039042          429 EMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGEL  508 (526)
Q Consensus       429 ~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~  508 (526)
                      .+++..  .++.+...           ++..+.+|+.+.+..  .++.++... +..|++|+++.+..  .++.......
T Consensus       324 ~i~lp~--~v~~I~~~-----------aF~~c~~L~~i~lp~--~l~~I~~~a-F~~C~~L~~i~lp~--~~~~~~~~F~  385 (394)
T 4fs7_A          324 SIDLPY--LVEEIGKR-----------SFRGCTSLSNINFPL--SLRKIGANA-FQGCINLKKVELPK--RLEQYRYDFE  385 (394)
T ss_dssp             EECCCT--TCCEECTT-----------TTTTCTTCCEECCCT--TCCEECTTT-BTTCTTCCEEEEEG--GGGGGGGGBC
T ss_pred             EEEeCC--cccEEhHH-----------hccCCCCCCEEEECc--cccEehHHH-hhCCCCCCEEEECC--CCEEhhheec
Confidence            887753  34544332           334567888887753  366776654 66788888888864  3444433334


Q ss_pred             CCcccceE
Q 039042          509 STPVLHKV  516 (526)
Q Consensus       509 ~~~~L~~l  516 (526)
                      ..++|+.+
T Consensus       386 ~c~~L~~I  393 (394)
T 4fs7_A          386 DTTKFKWI  393 (394)
T ss_dssp             TTCEEEEE
T ss_pred             CCCCCcEE
Confidence            45666654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.72  E-value=3e-08  Score=88.53  Aligned_cols=124  Identities=14%  Similarity=0.099  Sum_probs=71.0

Q ss_pred             hhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhc
Q 039042          131 EKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEER  210 (526)
Q Consensus       131 ~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~  210 (526)
                      +++++++++++.+    |.+   -.++|++|+++++. ++.+ |..+.   .+++|++|++++| .+..++...      
T Consensus        13 ~~l~~~~~~l~~i----p~~---~~~~l~~L~L~~n~-i~~i-p~~~~---~l~~L~~L~Ls~N-~i~~i~~~~------   73 (193)
T 2wfh_A           13 TVVRCSNKGLKVL----PKG---IPRDVTELYLDGNQ-FTLV-PKELS---NYKHLTLIDLSNN-RISTLSNQS------   73 (193)
T ss_dssp             TEEECTTSCCSSC----CSC---CCTTCCEEECCSSC-CCSC-CGGGG---GCTTCCEEECCSS-CCCCCCTTT------
T ss_pred             CEEEcCCCCCCcC----CCC---CCCCCCEEECCCCc-Cchh-HHHhh---cccCCCEEECCCC-cCCEeCHhH------
Confidence            3556666666654    332   34567777777753 3333 44433   6777777777776 454443221      


Q ss_pred             ccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeec
Q 039042          211 KNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAE  285 (526)
Q Consensus       211 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  285 (526)
                         +..+++|++|+++++ .++.++...  +..+++|++|+++++ .++.++...+     ..+++|+.|++++|
T Consensus        74 ---f~~l~~L~~L~Ls~N-~l~~i~~~~--f~~l~~L~~L~L~~N-~l~~~~~~~~-----~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           74 ---FSNMTQLLTLILSYN-RLRCIPPRT--FDGLKSLRLLSLHGN-DISVVPEGAF-----NDLSALSHLAIGAN  136 (193)
T ss_dssp             ---TTTCTTCCEEECCSS-CCCBCCTTT--TTTCTTCCEEECCSS-CCCBCCTTTT-----TTCTTCCEEECCSS
T ss_pred             ---ccCCCCCCEEECCCC-ccCEeCHHH--hCCCCCCCEEECCCC-CCCeeChhhh-----hcCccccEEEeCCC
Confidence               145677777777763 455554432  556677777777776 4555555432     24666666666644

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.70  E-value=3.3e-08  Score=88.19  Aligned_cols=125  Identities=14%  Similarity=0.099  Sum_probs=64.3

Q ss_pred             hhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcc-cccccccccccEEeeeccccccEEEeecchhhh
Q 039042          131 EKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSC-TVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEE  209 (526)
Q Consensus       131 ~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~-l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~  209 (526)
                      +++++++++++.+    |..   -.+++++|+++++ .++.+.+.. +.   .+++|++|++++| .+..+....     
T Consensus        11 ~~l~~s~~~l~~i----p~~---~~~~l~~L~l~~n-~i~~~~~~~~~~---~l~~L~~L~Ls~N-~l~~~~~~~-----   73 (192)
T 1w8a_A           11 TTVDCTGRGLKEI----PRD---IPLHTTELLLNDN-ELGRISSDGLFG---RLPHLVKLELKRN-QLTGIEPNA-----   73 (192)
T ss_dssp             TEEECTTSCCSSC----CSC---CCTTCSEEECCSC-CCCSBCCSCSGG---GCTTCCEEECCSS-CCCCBCTTT-----
T ss_pred             CEEEcCCCCcCcC----ccC---CCCCCCEEECCCC-cCCccCCccccc---cCCCCCEEECCCC-CCCCcCHhH-----
Confidence            4556666666544    322   2336666666665 344433322 22   5666666666666 344332111     


Q ss_pred             cccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeec
Q 039042          210 RKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAE  285 (526)
Q Consensus       210 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  285 (526)
                          +..+++|++|+++++ .++.++...  +..+++|++|+++++ ++..+++..+     ..+++|++|++++|
T Consensus        74 ----~~~l~~L~~L~Ls~N-~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~~~~~-----~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           74 ----FEGASHIQELQLGEN-KIKEISNKM--FLGLHQLKTLNLYDN-QISCVMPGSF-----EHLNSLTSLNLASN  136 (192)
T ss_dssp             ----TTTCTTCCEEECCSC-CCCEECSSS--STTCTTCCEEECCSS-CCCEECTTSS-----TTCTTCCEEECTTC
T ss_pred             ----cCCcccCCEEECCCC-cCCccCHHH--hcCCCCCCEEECCCC-cCCeeCHHHh-----hcCCCCCEEEeCCC
Confidence                145666666666653 445544332  445666666666666 4444433322     24556666666544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.70  E-value=6.6e-07  Score=89.27  Aligned_cols=261  Identities=10%  Similarity=0.065  Sum_probs=150.8

Q ss_pred             cCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccc
Q 039042          154 GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTS  233 (526)
Q Consensus       154 ~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~  233 (526)
                      .+..++.+.+.+  .++.+...++.   .. +|+.+.+..+  +..++...+         .. .+|+.+.+.+  .++.
T Consensus       111 ~~~~l~~i~ip~--~i~~I~~~aF~---~~-~L~~i~l~~~--i~~I~~~aF---------~~-~~L~~i~lp~--~l~~  170 (401)
T 4fdw_A          111 ILKGYNEIILPN--SVKSIPKDAFR---NS-QIAKVVLNEG--LKSIGDMAF---------FN-STVQEIVFPS--TLEQ  170 (401)
T ss_dssp             ECSSCSEEECCT--TCCEECTTTTT---TC-CCSEEECCTT--CCEECTTTT---------TT-CCCCEEECCT--TCCE
T ss_pred             ecCCccEEEECC--ccCEehHhhcc---cC-CccEEEeCCC--ccEECHHhc---------CC-CCceEEEeCC--CccE
Confidence            346666666654  34444333333   32 5777776553  555543221         11 3577777653  4555


Q ss_pred             cccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCcc
Q 039042          234 FCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDEL  313 (526)
Q Consensus       234 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  313 (526)
                      +....  +..|++|+.+.+.++ +++.++...+      ...+|+.+.+..+ + ..+..-....+++|+.+++...  +
T Consensus       171 I~~~a--F~~c~~L~~l~l~~n-~l~~I~~~aF------~~~~L~~l~lp~~-l-~~I~~~aF~~~~~L~~l~l~~~--l  237 (401)
T 4fdw_A          171 LKEDI--FYYCYNLKKADLSKT-KITKLPASTF------VYAGIEEVLLPVT-L-KEIGSQAFLKTSQLKTIEIPEN--V  237 (401)
T ss_dssp             ECSST--TTTCTTCCEEECTTS-CCSEECTTTT------TTCCCSEEECCTT-C-CEECTTTTTTCTTCCCEECCTT--C
T ss_pred             ehHHH--hhCcccCCeeecCCC-cceEechhhE------eecccCEEEeCCc-h-heehhhHhhCCCCCCEEecCCC--c
Confidence            54442  556777777777665 5566655442      2467777776522 1 2222223345667777777642  3


Q ss_pred             cccccchhHhhcCCCccEEEEeeccccccCCCcCccccccceEEEec-cCce-----eeccccccccCcccEEEEeccCC
Q 039042          314 TTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVFRC-YDLK-----YILKQESSIMNNLVILHVTNCHR  387 (526)
Q Consensus       314 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~-----~~~~~~~~~l~~L~~L~l~~c~~  387 (526)
                      +  .++...+.+ .+|+.+.+......++..+|  ..+++|+.+.+. +...     .+....|..+++|+.+.+..  .
T Consensus       238 ~--~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF--~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~  310 (401)
T 4fdw_A          238 S--TIGQEAFRE-SGITTVKLPNGVTNIASRAF--YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--S  310 (401)
T ss_dssp             C--EECTTTTTT-CCCSEEEEETTCCEECTTTT--TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--T
T ss_pred             c--Ccccccccc-CCccEEEeCCCccEEChhHh--hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--c
Confidence            3  455556666 67888888543444444444  667888888887 3332     57777888888888888873  3


Q ss_pred             cccccC-CCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeee-CccCe
Q 039042          388 LINLVP-SSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAF-SELNE  465 (526)
Q Consensus       388 l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~  465 (526)
                      +..++. .+..+++|+.+.|..  +++.+... .+..+ +|+.+++.+. ....+...           .+..+ ..++.
T Consensus       311 i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~-aF~~~-~L~~l~l~~n-~~~~l~~~-----------~F~~~~~~l~~  374 (401)
T 4fdw_A          311 IRILGQGLLGGNRKVTQLTIPA--NVTQINFS-AFNNT-GIKEVKVEGT-TPPQVFEK-----------VWYGFPDDITV  374 (401)
T ss_dssp             CCEECTTTTTTCCSCCEEEECT--TCCEECTT-SSSSS-CCCEEEECCS-SCCBCCCS-----------SCCCSCTTCCE
T ss_pred             eEEEhhhhhcCCCCccEEEECc--cccEEcHH-hCCCC-CCCEEEEcCC-CCcccccc-----------cccCCCCCccE
Confidence            544433 345667888888854  45555432 44556 8888888774 33333322           12233 36777


Q ss_pred             EecCC
Q 039042          466 LKLLN  470 (526)
Q Consensus       466 L~l~~  470 (526)
                      |++-.
T Consensus       375 l~vp~  379 (401)
T 4fdw_A          375 IRVPA  379 (401)
T ss_dssp             EEECG
T ss_pred             EEeCH
Confidence            77754

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.69  E-value=4.5e-08  Score=86.02  Aligned_cols=128  Identities=15%  Similarity=0.117  Sum_probs=74.4

Q ss_pred             hhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhh
Q 039042          130 LEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEE  209 (526)
Q Consensus       130 L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~  209 (526)
                      .+.+++++++++.+    |.+   ..++|++|+++++. ++.+++..+.   .+++|++|++++| .+..++...     
T Consensus         9 ~~~l~~~~~~l~~~----p~~---~~~~l~~L~l~~n~-l~~~~~~~~~---~l~~L~~L~l~~n-~l~~~~~~~-----   71 (177)
T 2o6r_A            9 GTEIRCNSKGLTSV----PTG---IPSSATRLELESNK-LQSLPHGVFD---KLTQLTKLSLSQN-QIQSLPDGV-----   71 (177)
T ss_dssp             TTEEECCSSCCSSC----CTT---CCTTCSEEECCSSC-CCCCCTTTTT---TCTTCSEEECCSS-CCCCCCTTT-----
T ss_pred             CCEEEecCCCCccC----CCC---CCCCCcEEEeCCCc-ccEeCHHHhc---CcccccEEECCCC-cceEeChhH-----
Confidence            34556666666554    322   34677777777754 4444333333   6777777777776 455443321     


Q ss_pred             cccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccc
Q 039042          210 RKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYI  287 (526)
Q Consensus       210 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  287 (526)
                          +..+++|++|+++++ .++.++...  +..+++|++|+++++ .++.++...+.     .+++|++|++++|.+
T Consensus        72 ----~~~l~~L~~L~l~~N-~l~~~~~~~--~~~l~~L~~L~l~~N-~l~~~~~~~~~-----~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           72 ----FDKLTKLTILYLHEN-KLQSLPNGV--FDKLTQLKELALDTN-QLKSVPDGIFD-----RLTSLQKIWLHTNPW  136 (177)
T ss_dssp             ----TTTCTTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSS-CCSCCCTTTTT-----TCTTCCEEECCSSCB
T ss_pred             ----ccCCCccCEEECCCC-CccccCHHH--hhCCcccCEEECcCC-cceEeCHHHhc-----CCcccCEEEecCCCe
Confidence                145677777777763 455555432  456777777777776 55555554322     466666666665543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.68  E-value=3e-08  Score=87.03  Aligned_cols=38  Identities=18%  Similarity=0.291  Sum_probs=18.4

Q ss_pred             ccccccceeecccCccccccccCcccccCCCCccEEEeccC
Q 039042          215 VMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRC  255 (526)
Q Consensus       215 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c  255 (526)
                      ..+++|++|+++++ .+..++...  +..+++|++|++++|
T Consensus        61 ~~l~~L~~L~Ls~N-~l~~~~~~~--~~~l~~L~~L~L~~N   98 (176)
T 1a9n_A           61 PLLRRLKTLLVNNN-RICRIGEGL--DQALPDLTELILTNN   98 (176)
T ss_dssp             CCCSSCCEEECCSS-CCCEECSCH--HHHCTTCCEEECCSC
T ss_pred             ccCCCCCEEECCCC-cccccCcch--hhcCCCCCEEECCCC
Confidence            34555555555543 344443331  244555555555555

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.66  E-value=1.3e-06  Score=87.18  Aligned_cols=124  Identities=10%  Similarity=0.105  Sum_probs=71.7

Q ss_pred             ccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeeccccccCCCcCccccccceEEEeccCceeeccccccccCcc
Q 039042          298 LLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVFRCYDLKYILKQESSIMNNL  377 (526)
Q Consensus       298 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~l~~~~~~~~~~l~~L  377 (526)
                      .+..|+.+.+....  .  .+....+..+..++.+.....  ..+...+  ..+.+|+.+.+.+++..+....|..+.+|
T Consensus       251 ~~~~l~~~~~~~~~--~--~i~~~~F~~~~~l~~~~~~~~--~i~~~~F--~~~~~L~~i~l~~~i~~I~~~aF~~c~~L  322 (394)
T 4fs7_A          251 GCTDLESISIQNNK--L--RIGGSLFYNCSGLKKVIYGSV--IVPEKTF--YGCSSLTEVKLLDSVKFIGEEAFESCTSL  322 (394)
T ss_dssp             TCSSCCEEEECCTT--C--EECSCTTTTCTTCCEEEECSS--EECTTTT--TTCTTCCEEEECTTCCEECTTTTTTCTTC
T ss_pred             ccccceeEEcCCCc--c--eeeccccccccccceeccCce--eeccccc--cccccccccccccccceechhhhcCCCCC
Confidence            45566666654321  1  233345555666666554411  1222222  45567777777666777777777777888


Q ss_pred             cEEEEeccCCcccccC-CCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEcc
Q 039042          378 VILHVTNCHRLINLVP-SSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIES  434 (526)
Q Consensus       378 ~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~  434 (526)
                      +.+++..  .+..+.. .+..+++|+.+.+..  +++.+.. ..+..+++|+.+++..
T Consensus       323 ~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~-~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          323 VSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGA-NAFQGCINLKKVELPK  375 (394)
T ss_dssp             CEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECT-TTBTTCTTCCEEEEEG
T ss_pred             CEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehH-HHhhCCCCCCEEEECC
Confidence            8887753  2444432 345667788877753  3555543 3556778888888864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.66  E-value=4.5e-08  Score=87.35  Aligned_cols=108  Identities=15%  Similarity=0.145  Sum_probs=83.5

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      .++|++|++++|.++.+    |.. +..+++|++|++++|. ++.+.+..+.   .+++|++|++++| .+..++...  
T Consensus        30 ~~~l~~L~L~~n~i~~i----p~~-~~~l~~L~~L~Ls~N~-i~~i~~~~f~---~l~~L~~L~Ls~N-~l~~i~~~~--   97 (193)
T 2wfh_A           30 PRDVTELYLDGNQFTLV----PKE-LSNYKHLTLIDLSNNR-ISTLSNQSFS---NMTQLLTLILSYN-RLRCIPPRT--   97 (193)
T ss_dssp             CTTCCEEECCSSCCCSC----CGG-GGGCTTCCEEECCSSC-CCCCCTTTTT---TCTTCCEEECCSS-CCCBCCTTT--
T ss_pred             CCCCCEEECCCCcCchh----HHH-hhcccCCCEEECCCCc-CCEeCHhHcc---CCCCCCEEECCCC-ccCEeCHHH--
Confidence            56899999999988865    333 6689999999999974 5565555555   7999999999998 566665432  


Q ss_pred             hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCC
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCP  256 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~  256 (526)
                             +..+++|++|+++++ .+..++...  +..+++|+.|++++++
T Consensus        98 -------f~~l~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           98 -------FDGLKSLRLLSLHGN-DISVVPEGA--FNDLSALSHLAIGANP  137 (193)
T ss_dssp             -------TTTCTTCCEEECCSS-CCCBCCTTT--TTTCTTCCEEECCSSC
T ss_pred             -------hCCCCCCCEEECCCC-CCCeeChhh--hhcCccccEEEeCCCC
Confidence                   257899999999984 677776653  6679999999999873

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.65  E-value=2.4e-08  Score=87.73  Aligned_cols=129  Identities=16%  Similarity=0.102  Sum_probs=91.8

Q ss_pred             hhhhhhhcccccccccccccccccccccC-CcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecc
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGI-QNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDN  205 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l-~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~  205 (526)
                      +.+|+.|++++|.++.+.  .    +..+ ++|++|++++|. ++.+ + .   ++.+++|++|++++| .+..++....
T Consensus        18 ~~~L~~L~l~~n~l~~i~--~----~~~~~~~L~~L~Ls~N~-l~~~-~-~---l~~l~~L~~L~Ls~N-~l~~~~~~~~   84 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIE--N----LGATLDQFDAIDFSDNE-IRKL-D-G---FPLLRRLKTLLVNNN-RICRIGEGLD   84 (176)
T ss_dssp             TTSCEEEECTTSCCCSCC--C----GGGGTTCCSEEECCSSC-CCEE-C-C---CCCCSSCCEEECCSS-CCCEECSCHH
T ss_pred             cCCceEEEeeCCCCchhH--H----hhhcCCCCCEEECCCCC-CCcc-c-c---cccCCCCCEEECCCC-cccccCcchh
Confidence            788999999999887651  1    2244 499999999974 5554 3 3   448999999999998 6777764321


Q ss_pred             hhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceecccc---ccCCccccccCCcceEEE
Q 039042          206 QEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKR---TTNDLTKKVFPNLEELIV  282 (526)
Q Consensus       206 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~---~~~~~~~~~l~~L~~L~l  282 (526)
                               ..+++|++|+++++ .+..++.. ..+..+++|+.|++++| .+..++..   ..     ..+++|+.|++
T Consensus        85 ---------~~l~~L~~L~L~~N-~i~~~~~~-~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~-----~~l~~L~~Ld~  147 (176)
T 1a9n_A           85 ---------QALPDLTELILTNN-SLVELGDL-DPLASLKSLTYLCILRN-PVTNKKHYRLYVI-----YKVPQVRVLDF  147 (176)
T ss_dssp             ---------HHCTTCCEEECCSC-CCCCGGGG-GGGGGCTTCCEEECCSS-GGGGSTTHHHHHH-----HHCTTCSEETT
T ss_pred             ---------hcCCCCCEEECCCC-cCCcchhh-HhhhcCCCCCEEEecCC-CCCCcHhHHHHHH-----HHCCccceeCC
Confidence                     46899999999985 56777651 12778999999999988 45544432   01     35677777776


Q ss_pred             eec
Q 039042          283 DAE  285 (526)
Q Consensus       283 ~~~  285 (526)
                      +.+
T Consensus       148 ~~n  150 (176)
T 1a9n_A          148 QKV  150 (176)
T ss_dssp             EEC
T ss_pred             CcC
Confidence            654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.63  E-value=6.2e-09  Score=112.33  Aligned_cols=109  Identities=18%  Similarity=0.045  Sum_probs=54.9

Q ss_pred             cccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccc
Q 039042          152 TCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKL  231 (526)
Q Consensus       152 ~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l  231 (526)
                      +..+++|+.|+|++|.. ..+ |..+.   .+++|++|+|++| .+..+|..+          +.+++|++|+++++ .+
T Consensus       220 ~~~l~~L~~L~Ls~n~l-~~l-~~~~~---~l~~L~~L~Ls~N-~l~~lp~~~----------~~l~~L~~L~Ls~N-~l  282 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQI-FNI-SANIF---KYDFLTRLYLNGN-SLTELPAEI----------KNLSNLRVLDLSHN-RL  282 (727)
T ss_dssp             --CCCCCCEEECTTSCC-SCC-CGGGG---GCCSCSCCBCTTS-CCSCCCGGG----------GGGTTCCEEECTTS-CC
T ss_pred             hccCCCCcEEECCCCCC-CCC-Chhhc---CCCCCCEEEeeCC-cCcccChhh----------hCCCCCCEEeCcCC-cC
Confidence            33455566666655432 232 33333   4555666666655 344444332          44555666666553 34


Q ss_pred             cccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccc
Q 039042          232 TSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYI  287 (526)
Q Consensus       232 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  287 (526)
                      +.+|..   ++.+++|++|++++| .+..+|..+      ..+++|+.|++++|.+
T Consensus       283 ~~lp~~---~~~l~~L~~L~L~~N-~l~~lp~~~------~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          283 TSLPAE---LGSCFQLKYFYFFDN-MVTTLPWEF------GNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             SSCCSS---GGGGTTCSEEECCSS-CCCCCCSST------TSCTTCCCEECTTSCC
T ss_pred             CccChh---hcCCCCCCEEECCCC-CCCccChhh------hcCCCccEEeCCCCcc
Confidence            455444   555566666666555 445555443      2455555555555544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.61  E-value=1.3e-07  Score=84.28  Aligned_cols=107  Identities=16%  Similarity=0.072  Sum_probs=59.4

Q ss_pred             cccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCceeeccccccccCc
Q 039042          299 LCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNN  376 (526)
Q Consensus       299 ~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~  376 (526)
                      +++|++|+++++..-.  ..+...+..+++|++|+++.+ ...+....+  ..+++|++|+++ +.+..+++..+..+++
T Consensus        28 ~~~l~~L~l~~n~i~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  103 (192)
T 1w8a_A           28 PLHTTELLLNDNELGR--ISSDGLFGRLPHLVKLELKRNQLTGIEPNAF--EGASHIQELQLGENKIKEISNKMFLGLHQ  103 (192)
T ss_dssp             CTTCSEEECCSCCCCS--BCCSCSGGGCTTCCEEECCSSCCCCBCTTTT--TTCTTCCEEECCSCCCCEECSSSSTTCTT
T ss_pred             CCCCCEEECCCCcCCc--cCCccccccCCCCCEEECCCCCCCCcCHhHc--CCcccCCEEECCCCcCCccCHHHhcCCCC
Confidence            3355555555543221  111123455666666666622 222222222  455667777776 6777776666777777


Q ss_pred             ccEEEEeccCCcccccCCCccCCCcCEEEEccC
Q 039042          377 LVILHVTNCHRLINLVPSSTSFQNLTSLEISYC  409 (526)
Q Consensus       377 L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c  409 (526)
                      |++|+++++..-...+..+..+++|++|+++++
T Consensus       104 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A          104 LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             CCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence            777777776443333445566677777777665

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.57  E-value=4.6e-08  Score=105.48  Aligned_cols=112  Identities=20%  Similarity=0.128  Sum_probs=90.8

Q ss_pred             hhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecc
Q 039042          126 FLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDN  205 (526)
Q Consensus       126 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~  205 (526)
                      .+..|+.|+|++|.+..+    +.+ +..+++|++|+|++|. ++.+ |..+.   .+++|++|+|++| .+..+|..+ 
T Consensus       222 ~l~~L~~L~Ls~n~l~~l----~~~-~~~l~~L~~L~Ls~N~-l~~l-p~~~~---~l~~L~~L~Ls~N-~l~~lp~~~-  289 (727)
T 4b8c_D          222 DDQLWHALDLSNLQIFNI----SAN-IFKYDFLTRLYLNGNS-LTEL-PAEIK---NLSNLRVLDLSHN-RLTSLPAEL-  289 (727)
T ss_dssp             CCCCCCEEECTTSCCSCC----CGG-GGGCCSCSCCBCTTSC-CSCC-CGGGG---GGTTCCEEECTTS-CCSSCCSSG-
T ss_pred             cCCCCcEEECCCCCCCCC----Chh-hcCCCCCCEEEeeCCc-Cccc-Chhhh---CCCCCCEEeCcCC-cCCccChhh-
Confidence            378899999999988765    333 5589999999999975 4454 76665   7999999999999 577776654 


Q ss_pred             hhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccc
Q 039042          206 QEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFK  263 (526)
Q Consensus       206 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~  263 (526)
                               +.+++|++|+++++ .++.+|..   ++.+++|++|++++| .+...++
T Consensus       290 ---------~~l~~L~~L~L~~N-~l~~lp~~---~~~l~~L~~L~L~~N-~l~~~~p  333 (727)
T 4b8c_D          290 ---------GSCFQLKYFYFFDN-MVTTLPWE---FGNLCNLQFLGVEGN-PLEKQFL  333 (727)
T ss_dssp             ---------GGGTTCSEEECCSS-CCCCCCSS---TTSCTTCCCEECTTS-CCCSHHH
T ss_pred             ---------cCCCCCCEEECCCC-CCCccChh---hhcCCCccEEeCCCC-ccCCCCh
Confidence                     67999999999985 67888776   889999999999999 4554443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.46  E-value=8.5e-09  Score=92.54  Aligned_cols=34  Identities=35%  Similarity=0.479  Sum_probs=15.3

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccC
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNC  166 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c  166 (526)
                      +++|++|++++|.++.+    | . +..+++|++|++++|
T Consensus        47 l~~L~~L~ls~n~l~~l----~-~-~~~l~~L~~L~l~~n   80 (198)
T 1ds9_A           47 LKACKHLALSTNNIEKI----S-S-LSGMENLRILSLGRN   80 (198)
T ss_dssp             TTTCSEEECSEEEESCC----C-C-HHHHTTCCEEEEEEE
T ss_pred             CCCCCEEECCCCCCccc----c-c-cccCCCCCEEECCCC
Confidence            44455555555544432    1 1 334455555555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.45  E-value=7.4e-07  Score=78.10  Aligned_cols=110  Identities=11%  Similarity=0.096  Sum_probs=55.5

Q ss_pred             ccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCceeeccccc
Q 039042          294 FSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQES  371 (526)
Q Consensus       294 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~  371 (526)
                      +|...+++|++|+++++. ++  .++...+..+++|++|+++.+ ...++...+  ..+++|++|++. +.+..+++..+
T Consensus        22 ~p~~~~~~l~~L~l~~n~-l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~~~~   96 (177)
T 2o6r_A           22 VPTGIPSSATRLELESNK-LQ--SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF--DKLTKLTILYLHENKLQSLPNGVF   96 (177)
T ss_dssp             CCTTCCTTCSEEECCSSC-CC--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CCCCCCCCCcEEEeCCCc-cc--EeCHHHhcCcccccEEECCCCcceEeChhHc--cCCCccCEEECCCCCccccCHHHh
Confidence            344444556666666544 22  234434555666666666522 222222221  344555556555 55555555555


Q ss_pred             cccCcccEEEEeccCCcccccCC-CccCCCcCEEEEccC
Q 039042          372 SIMNNLVILHVTNCHRLINLVPS-STSFQNLTSLEISYC  409 (526)
Q Consensus       372 ~~l~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c  409 (526)
                      ..+++|++|+++++ .+..++.. +..+++|++|+++++
T Consensus        97 ~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           97 DKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             hCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCC
Confidence            55666666666655 33344333 244556666666554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.35  E-value=2.7e-08  Score=89.19  Aligned_cols=78  Identities=21%  Similarity=0.180  Sum_probs=38.5

Q ss_pred             ccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhccccc
Q 039042          350 MEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLR  428 (526)
Q Consensus       350 ~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~  428 (526)
                      .+++|++|+++ +.+..++  .+..+++|+.|++++|. +..+|.....+++|+.|+++++ +++.++   .+..+++|+
T Consensus        46 ~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N-~l~~l~---~~~~l~~L~  118 (198)
T 1ds9_A           46 TLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN-QIASLS---GIEKLVNLR  118 (198)
T ss_dssp             HTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEE-ECCCHH---HHHHHHHSS
T ss_pred             cCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCC-cCCcCC---ccccCCCCC
Confidence            44555566555 4444443  44455555555555542 3334333333455555555554 344432   234455555


Q ss_pred             EEEEcc
Q 039042          429 EMKIES  434 (526)
Q Consensus       429 ~L~i~~  434 (526)
                      .|++++
T Consensus       119 ~L~l~~  124 (198)
T 1ds9_A          119 VLYMSN  124 (198)
T ss_dssp             EEEESE
T ss_pred             EEECCC
Confidence            555555

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.34  E-value=7.2e-07  Score=77.66  Aligned_cols=53  Identities=9%  Similarity=0.129  Sum_probs=24.0

Q ss_pred             hhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeecc
Q 039042          131 EKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKC  194 (526)
Q Consensus       131 ~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~  194 (526)
                      +.+++++++++.+    |.+   -.++|++|++++| .++.+.|..+.   .+++|++|++++|
T Consensus        12 ~~l~~s~n~l~~i----p~~---~~~~l~~L~L~~N-~i~~~~~~~~~---~l~~L~~L~Ls~N   64 (170)
T 3g39_A           12 TTVDCSGKSLASV----PTG---IPTTTQVLYLYDN-QITKLEPGVFD---RLTQLTRLDLDNN   64 (170)
T ss_dssp             TEEECTTSCCSSC----CSC---CCTTCSEEECCSS-CCCCCCTTTTT---TCTTCSEEECCSS
T ss_pred             CEEEeCCCCcCcc----Ccc---CCCCCcEEEcCCC-cCCccChhhhc---CcccCCEEECCCC
Confidence            4455555544443    222   2345555555553 23333333333   4555555555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.30  E-value=1e-06  Score=76.99  Aligned_cols=35  Identities=20%  Similarity=0.117  Sum_probs=15.9

Q ss_pred             CcccEEEeccCCCceecCCcccccccccccccEEeeecc
Q 039042          156 QNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKC  194 (526)
Q Consensus       156 ~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~  194 (526)
                      ++|++|++++|. ++.+.|..+.   .+++|++|++++|
T Consensus        33 ~~L~~L~Ls~N~-l~~~~~~~~~---~l~~L~~L~Ls~N   67 (174)
T 2r9u_A           33 TDKQRLWLNNNQ-ITKLEPGVFD---HLVNLQQLYFNSN   67 (174)
T ss_dssp             TTCSEEECCSSC-CCCCCTTTTT---TCTTCCEEECCSS
T ss_pred             CCCcEEEeCCCC-ccccCHHHhc---CCcCCCEEECCCC
Confidence            455555555532 3333333332   4555555555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.26  E-value=1.2e-06  Score=76.52  Aligned_cols=60  Identities=20%  Similarity=0.220  Sum_probs=26.3

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeecc
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKC  194 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~  194 (526)
                      +++|++|+|++|.++.+    +.+.+..+++|++|+|++| .++.+++..+.   .+++|++|++++|
T Consensus        56 l~~L~~L~Ls~N~l~~i----~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~---~l~~L~~L~L~~N  115 (174)
T 2r9u_A           56 LVNLQQLYFNSNKLTAI----PTGVFDKLTQLTQLDLNDN-HLKSIPRGAFD---NLKSLTHIYLYNN  115 (174)
T ss_dssp             CTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSS-CCCCCCTTTTT---TCTTCSEEECCSS
T ss_pred             CcCCCEEECCCCCCCcc----ChhHhCCcchhhEEECCCC-ccceeCHHHhc---cccCCCEEEeCCC
Confidence            44555555555544433    1111234555555555553 23333222222   4555555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.25  E-value=6.5e-07  Score=77.30  Aligned_cols=64  Identities=14%  Similarity=0.213  Sum_probs=29.0

Q ss_pred             cccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHh---hcccccEEEEccccccc
Q 039042          376 NLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAK---TLVRLREMKIESCAMIT  439 (526)
Q Consensus       376 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~---~l~~L~~L~i~~c~~l~  439 (526)
                      .|+.|++++|.....-...+..+++|++|++++|..+++........   ..++|++|++++|..++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence            45666666654211111223445556666666665555543222221   12345555555555443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.24  E-value=1.4e-06  Score=75.75  Aligned_cols=60  Identities=20%  Similarity=0.262  Sum_probs=30.1

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeecc
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKC  194 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~  194 (526)
                      +++|++|+|++|.++.+    +.+.+..+++|++|+|++| .++.+++..+.   .+++|++|++++|
T Consensus        53 l~~L~~L~Ls~N~l~~l----~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~---~l~~L~~L~L~~N  112 (170)
T 3g39_A           53 LTQLTRLDLDNNQLTVL----PAGVFDKLTQLTQLSLNDN-QLKSIPRGAFD---NLKSLTHIWLLNN  112 (170)
T ss_dssp             CTTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSS-CCCCCCTTTTT---TCTTCCEEECCSS
T ss_pred             cccCCEEECCCCCcCcc----ChhhccCCCCCCEEECCCC-ccCEeCHHHhc---CCCCCCEEEeCCC
Confidence            45556666666655543    1111234566666666654 33443332232   4566666666655

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.22  E-value=8.7e-07  Score=76.53  Aligned_cols=102  Identities=11%  Similarity=0.120  Sum_probs=73.6

Q ss_pred             ccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCe-eeeCccCeEecC
Q 039042          391 LVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEV-IAFSELNELKLL  469 (526)
Q Consensus       391 l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~  469 (526)
                      +|.....-..|++|++++|. +++.... .+..+++|++|++++|..+++-....-.        .. ...++|++|+++
T Consensus        53 LP~~~~~~~~L~~LDLs~~~-Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~--------~~~~~~~~L~~L~Ls  122 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSC-IMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLS--------QLENLQKSMLEMEII  122 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCC-CCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHH--------TCHHHHHHCCEEEEE
T ss_pred             CCcccCCCceEeEEeCcCCC-ccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHH--------hcccccCCCCEEEcC
Confidence            34333334579999999996 7776443 4578999999999999877653221100        00 013589999999


Q ss_pred             CCccccccCCCCccccCCCccEEeEecCCCcccc
Q 039042          470 NLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGF  503 (526)
Q Consensus       470 ~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l  503 (526)
                      +|+++++-.... +..+++|++|++++|++++..
T Consensus       123 ~C~~ITD~Gl~~-L~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          123 SCGNVTDKGIIA-LHHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             SCTTCCHHHHHH-GGGCTTCCEEEEESCTTCCCH
T ss_pred             CCCcCCHHHHHH-HhcCCCCCEEECCCCCCCCch
Confidence            999998765553 557899999999999998764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.09  E-value=0.00051  Score=68.23  Aligned_cols=122  Identities=12%  Similarity=0.111  Sum_probs=71.5

Q ss_pred             ceEEEeccCceeeccccccccCcccEEEEeccCCccccc-CCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEE
Q 039042          354 IRRVFRCYDLKYILKQESSIMNNLVILHVTNCHRLINLV-PSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKI  432 (526)
Q Consensus       354 L~~L~l~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i  432 (526)
                      +..+.+.+.+..+....|..+..|+.+.+....  ..+. ..+..+++|+.+.+..  .++.++. ..+..+++|+.++|
T Consensus       244 ~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~~--~i~~I~~-~aF~~c~~L~~i~l  318 (394)
T 4gt6_A          244 DPAFKIPNGVARIETHAFDSCAYLASVKMPDSV--VSIGTGAFMNCPALQDIEFSS--RITELPE-SVFAGCISLKSIDI  318 (394)
T ss_dssp             CSEEECCTTEEEECTTTTTTCSSCCEEECCTTC--CEECTTTTTTCTTCCEEECCT--TCCEECT-TTTTTCTTCCEEEC
T ss_pred             cceEEcCCcceEcccceeeecccccEEeccccc--ceecCcccccccccccccCCC--cccccCc-eeecCCCCcCEEEe
Confidence            334444455666666677777777777775321  1221 2334566777777742  4555543 24556777887777


Q ss_pred             ccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEec
Q 039042          433 ESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDD  496 (526)
Q Consensus       433 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~  496 (526)
                      ..  .++.+...           ++..+.+|+.+.+-.  .++.+.... +..|++|+.+.+.+
T Consensus       319 p~--~v~~I~~~-----------aF~~C~~L~~i~ip~--sv~~I~~~a-F~~C~~L~~i~~~~  366 (394)
T 4gt6_A          319 PE--GITQILDD-----------AFAGCEQLERIAIPS--SVTKIPESA-FSNCTALNNIEYSG  366 (394)
T ss_dssp             CT--TCCEECTT-----------TTTTCTTCCEEEECT--TCCBCCGGG-GTTCTTCCEEEESS
T ss_pred             CC--cccEehHh-----------HhhCCCCCCEEEECc--ccCEEhHhH-hhCCCCCCEEEECC
Confidence            54  34444332           334567788887743  466666553 66678888887765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.02  E-value=0.00032  Score=69.75  Aligned_cols=79  Identities=15%  Similarity=0.096  Sum_probs=34.9

Q ss_pred             ccccceEEEeccCceeeccccccccCcccEEEEeccCCcccccC-CCccCCCcCEEEEccCCCcccccchHHHhhccccc
Q 039042          350 MEVIIRRVFRCYDLKYILKQESSIMNNLVILHVTNCHRLINLVP-SSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLR  428 (526)
Q Consensus       350 ~~~~L~~L~l~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~  428 (526)
                      .+..|+.+.+.+.+..+....+..+.+|+.+.+..  .+..++. .+..+.+|+.+.|..  +++.+.. ..+..+++|+
T Consensus       263 ~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~-~aF~~C~~L~  337 (394)
T 4gt6_A          263 SCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILD-DAFAGCEQLE  337 (394)
T ss_dssp             TCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECT-TTTTTCTTCC
T ss_pred             ecccccEEecccccceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehH-hHhhCCCCCC
Confidence            33444444444444444444555555555555532  2222222 223345555555532  2333322 2334455556


Q ss_pred             EEEEc
Q 039042          429 EMKIE  433 (526)
Q Consensus       429 ~L~i~  433 (526)
                      ++.|.
T Consensus       338 ~i~ip  342 (394)
T 4gt6_A          338 RIAIP  342 (394)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            55553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.83  E-value=3.4e-05  Score=75.32  Aligned_cols=38  Identities=29%  Similarity=0.257  Sum_probs=15.2

Q ss_pred             cCCcccEEEeccCCCceecCCcccccccccccccEEeeecc
Q 039042          154 GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKC  194 (526)
Q Consensus       154 ~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~  194 (526)
                      .+++|++|+|++++.++.++|..+.   .+++|++|+|++|
T Consensus        29 ~~~~L~~L~l~~~n~l~~~~~~~~~---~l~~L~~L~l~~N   66 (347)
T 2ifg_A           29 GAENLTELYIENQQHLQHLELRDLR---GLGELRNLTIVKS   66 (347)
T ss_dssp             SCSCCSEEECCSCSSCCEECGGGSC---SCCCCSEEECCSS
T ss_pred             CCCCeeEEEccCCCCCCCcChhHhc---cccCCCEEECCCC
Confidence            3344444444432233333222222   3444444444444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.81  E-value=3.2e-05  Score=75.50  Aligned_cols=105  Identities=19%  Similarity=0.140  Sum_probs=78.7

Q ss_pred             cEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccccCc
Q 039042          159 THLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGD  238 (526)
Q Consensus       159 ~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~  238 (526)
                      ..++.++.+.++.+ |. +.   .+.+|++|+|+++..+..++...         +..+++|++|+++++ .++.++...
T Consensus        11 ~~v~~~~~n~l~~i-p~-l~---~~~~L~~L~l~~~n~l~~~~~~~---------~~~l~~L~~L~l~~N-~l~~~~~~~   75 (347)
T 2ifg_A           11 SGLRCTRDGALDSL-HH-LP---GAENLTELYIENQQHLQHLELRD---------LRGLGELRNLTIVKS-GLRFVAPDA   75 (347)
T ss_dssp             SCEECCSSCCCTTT-TT-SC---SCSCCSEEECCSCSSCCEECGGG---------SCSCCCCSEEECCSS-CCCEECTTG
T ss_pred             CEEEcCCCCCCCcc-CC-CC---CCCCeeEEEccCCCCCCCcChhH---------hccccCCCEEECCCC-ccceeCHHH
Confidence            34566665467665 66 55   78999999999733788876432         267999999999985 788877653


Q ss_pred             ccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccc
Q 039042          239 VHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYI  287 (526)
Q Consensus       239 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  287 (526)
                        +..+++|+.|+|+++ ++..+++..+.     .+ .|+.|++.+|.+
T Consensus        76 --~~~l~~L~~L~l~~N-~l~~~~~~~~~-----~~-~L~~l~l~~N~~  115 (347)
T 2ifg_A           76 --FHFTPRLSRLNLSFN-ALESLSWKTVQ-----GL-SLQELVLSGNPL  115 (347)
T ss_dssp             --GGSCSCCCEEECCSS-CCSCCCSTTTC-----SC-CCCEEECCSSCC
T ss_pred             --hcCCcCCCEEeCCCC-ccceeCHHHcc-----cC-CceEEEeeCCCc
Confidence              678999999999998 78888876543     23 399999986654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.76  E-value=1.2e-05  Score=78.87  Aligned_cols=61  Identities=18%  Similarity=0.251  Sum_probs=32.4

Q ss_pred             hhhhhhhcccccccc---ccccc--ccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeecc
Q 039042          127 LEKLEKLELRSINIE---RIWRN--QVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKC  194 (526)
Q Consensus       127 l~~L~~L~L~~~~l~---~~~~~--~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~  194 (526)
                      +++|+.|.+.+....   -.|..  .....+..+|+|+.|.|.+|..++  ++. +    .+++|++|++..|
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~--l~~-~----~~~~L~~L~L~~~  203 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS--IGK-K----PRPNLKSLEIISG  203 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB--CCS-C----BCTTCSEEEEECS
T ss_pred             cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce--ecc-c----cCCCCcEEEEecC
Confidence            667777766554221   11211  111113457788888887764332  222 1    3677888888766

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.72  E-value=0.0063  Score=59.81  Aligned_cols=62  Identities=13%  Similarity=0.112  Sum_probs=29.5

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEE
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELI  201 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~  201 (526)
                      ..+|+.+.+... ++.+-...    +..|.+|+.+.+..  .++.+...++.   .. +|+.+.+..  .+..+.
T Consensus        45 ~~~i~~v~ip~~-vt~Ig~~a----F~~C~~L~~I~lp~--~v~~Ig~~aF~---~c-~l~~i~~~~--~l~~I~  106 (379)
T 4h09_A           45 RDRISEVRVNSG-ITSIGEAN----FNSCYNMTKVTVAS--TVTSIGDGAFA---DT-KLQSYTGME--RVKKFG  106 (379)
T ss_dssp             GGGCSEEEECTT-EEEECTTT----TTTCTTCCEEEECT--TCCEECTTTTT---TC-CCCEEEECT--TCCEEC
T ss_pred             ccCCEEEEeCCC-ccChHHHH----hhCCCCCCEEEeCC--cceEechhhhc---CC-CCceEECCc--eeeEec
Confidence            455666666543 33221111    44677777777754  24444333333   33 455555543  344443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.71  E-value=1.5e-05  Score=78.06  Aligned_cols=39  Identities=15%  Similarity=0.316  Sum_probs=25.6

Q ss_pred             cCcccEEEEeccCCccc-----ccCCCccCCCcCEEEEccCCCccc
Q 039042          374 MNNLVILHVTNCHRLIN-----LVPSSTSFQNLTSLEISYCNGLKN  414 (526)
Q Consensus       374 l~~L~~L~l~~c~~l~~-----l~~~~~~~~~L~~L~l~~c~~l~~  414 (526)
                      +++|++|+++.+. +..     +...+..+++|+.|++++| .+.+
T Consensus       278 ~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d  321 (362)
T 2ra8_A          278 LPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYN-YLSD  321 (362)
T ss_dssp             GGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSB-BCCH
T ss_pred             CCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCC-cCCH
Confidence            5677888886653 322     3334456789999999887 4554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.69  E-value=3.4e-06  Score=83.28  Aligned_cols=37  Identities=16%  Similarity=0.256  Sum_probs=16.0

Q ss_pred             CCCcCEEEEccCCCcccccchH---HHhhcccccEEEEccc
Q 039042          398 FQNLTSLEISYCNGLKNVLTFS---IAKTLVRLREMKIESC  435 (526)
Q Consensus       398 ~~~L~~L~l~~c~~l~~~~~~~---~~~~l~~L~~L~i~~c  435 (526)
                      .++|++|++++| .+++.....   .+...++|++|++++|
T Consensus       210 ~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          210 NRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN  249 (372)
T ss_dssp             CSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred             CCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence            345555555554 333322111   1223355555555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.69  E-value=1.2e-06  Score=86.56  Aligned_cols=173  Identities=17%  Similarity=0.100  Sum_probs=83.6

Q ss_pred             hhhhhhhcccccccccccccccccccc-cCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecc
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTC-GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDN  205 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~-~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~  205 (526)
                      +++|+.|++++|.++..-.......+. ..++|++|+|++|. ++......+..  .+++|++|++++| .+........
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~--~L~~L~~L~Ls~n-~l~~~~~~~L  146 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLP--VFLRARKLGLQLN-SLGPEACKDL  146 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHH--HHHTEEEEECCSS-CCCHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHH--HHHhccHhhcCCC-CCCHHHHHHH
Confidence            677888888888766431111111011 23688888888875 32211223332  5678888888887 4432211100


Q ss_pred             hhhhccccc-ccccccceeecccCccccccccCc--ccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEE
Q 039042          206 QEEERKNNI-VMFPQLQYLKMYDLEKLTSFCTGD--VHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIV  282 (526)
Q Consensus       206 ~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~~~~--~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l  282 (526)
                           ...+ ...++|++|++++| .+.......  ..+...++|++|++++|. +.......+... -...++|+.|++
T Consensus       147 -----~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~-L~~~~~L~~L~L  218 (372)
T 3un9_A          147 -----RDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQ-LDRNRQLQELNV  218 (372)
T ss_dssp             -----HHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHH-GGGCSCCCEEEC
T ss_pred             -----HHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHH-HhcCCCcCeEEC
Confidence                 0000 13467888888776 333311100  013456778888887773 432110000000 023456777777


Q ss_pred             eecccccc-ceeccc--cccccccEEEeeeCC
Q 039042          283 DAEYIITN-KFIFSE--DLLCKLKCLDVEFVD  311 (526)
Q Consensus       283 ~~~~~~~~-~~~~~~--~~~~~L~~L~l~~~~  311 (526)
                      ++|.+.+. ...+..  ...++|++|++++|.
T Consensus       219 s~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          219 AYNGAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             CSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            76655321 011111  123456666666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.48  E-value=0.0052  Score=60.45  Aligned_cols=101  Identities=12%  Similarity=0.010  Sum_probs=54.9

Q ss_pred             ccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeeccccccCCCcCccccccceEEEec-cCceeeccccccccCc
Q 039042          298 LLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNN  376 (526)
Q Consensus       298 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~  376 (526)
                      .+..|+.+.+...  ++  .+....+..+.+|+.+.+......++...|  ..+++|+.+.+. ..++.+....|..+.+
T Consensus       238 ~~~~L~~i~lp~~--v~--~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF--~~c~~L~~i~l~~~~i~~I~~~aF~~c~~  311 (379)
T 4h09_A          238 GMKALDEIAIPKN--VT--SIGSFLLQNCTALKTLNFYAKVKTVPYLLC--SGCSNLTKVVMDNSAIETLEPRVFMDCVK  311 (379)
T ss_dssp             TCSSCCEEEECTT--CC--EECTTTTTTCTTCCEEEECCCCSEECTTTT--TTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred             CCccceEEEcCCC--cc--EeCccccceeehhccccccccceecccccc--ccccccccccccccccceehhhhhcCCCC
Confidence            3445555555332  22  344445556666666666432222333333  456677777776 5677777777777777


Q ss_pred             ccEEEEeccCCcccccC-CCccCCCcCEEEE
Q 039042          377 LVILHVTNCHRLINLVP-SSTSFQNLTSLEI  406 (526)
Q Consensus       377 L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l  406 (526)
                      |+.+.+..  .+..+.. .+..+++|+.+.+
T Consensus       312 L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          312 LSSVTLPT--ALKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             CCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred             CCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence            87777753  2333322 2344555665555

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.21  E-value=0.0064  Score=56.32  Aligned_cols=82  Identities=22%  Similarity=0.095  Sum_probs=46.5

Q ss_pred             cCCcccEEEeccCCCceecC--CcccccccccccccEEeeeccccccEEEeecchhhhccccccccc--ccceeecccCc
Q 039042          154 GIQNLTHLTLYNCMNLRCLF--SSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFP--QLQYLKMYDLE  229 (526)
Q Consensus       154 ~l~~L~~L~L~~c~~l~~l~--p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~  229 (526)
                      ++++|++|+|++|. ++.+.  |..+.   .+++|+.|+|++| .+..+.. .          ..+.  +|++|++++++
T Consensus       168 ~l~~L~~L~Ls~N~-l~~l~~l~~~~~---~l~~L~~L~Ls~N-~i~~~~~-l----------~~l~~l~L~~L~L~~Np  231 (267)
T 3rw6_A          168 NIPELLSLNLSNNR-LYRLDDMSSIVQ---KAPNLKILNLSGN-ELKSERE-L----------DKIKGLKLEELWLDGNS  231 (267)
T ss_dssp             HCTTCCEEECTTSC-CCCCGGGTTHHH---HSTTCCEEECTTS-CCCSGGG-G----------GGGTTSCCSEEECTTST
T ss_pred             hCCCCCEEECCCCC-CCCCccchhHHh---hCCCCCEEECCCC-ccCCchh-h----------hhcccCCcceEEccCCc
Confidence            57788888888764 44321  22222   6778888888877 4444311 1          2233  78888887765


Q ss_pred             cccccccCc----ccccCCCCccEEE
Q 039042          230 KLTSFCTGD----VHMLEFPSLKELW  251 (526)
Q Consensus       230 ~l~~~~~~~----~~~~~l~~L~~L~  251 (526)
                      --..++...    ..+..+|+|+.|+
T Consensus       232 l~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          232 LCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             TGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             CccccCcchhHHHHHHHHCcccCeEC
Confidence            332222110    1255788888776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=94.93  E-value=0.0057  Score=53.42  Aligned_cols=118  Identities=13%  Similarity=0.072  Sum_probs=62.0

Q ss_pred             ccccCcccEEEEeccCCcc-----cccCCCccCCCcCEEEEccCCCcccccch---HHHhhcccccEEEEccccccceec
Q 039042          371 SSIMNNLVILHVTNCHRLI-----NLVPSSTSFQNLTSLEISYCNGLKNVLTF---SIAKTLVRLREMKIESCAMITEIV  442 (526)
Q Consensus       371 ~~~l~~L~~L~l~~c~~l~-----~l~~~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~l~~L~~L~i~~c~~l~~~~  442 (526)
                      +...+.|++|++++|..+.     .+...+...++|++|++++| .+.+....   ..+...++|++|++++|. +.+..
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g  109 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSG  109 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHH
Confidence            3345677777777773332     12222344577888888877 45543221   233445778888888754 33210


Q ss_pred             ccccCCcccccCCCeeeeCccCeEec--CCCccccccCCC---CccccCCCccEEeEecCC
Q 039042          443 LADDDDDHDAAKDEVIAFSELNELKL--LNLKSLRSFYSG---NRALNFPSLERLLVDDCT  498 (526)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~L~~L~l--~~~~~l~~l~~~---~~~~~~~~L~~L~l~~C~  498 (526)
                      ...-       .+.+...++|++|++  ++ +.+..-...   ..+...++|++|++++|.
T Consensus       110 ~~~l-------~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          110 ILAL-------VEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHH-------HHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHH-------HHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            0000       011234467888888  44 344332111   113345778888887753

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=94.64  E-value=0.023  Score=52.55  Aligned_cols=39  Identities=23%  Similarity=0.217  Sum_probs=20.6

Q ss_pred             cccccceeecccCccccccccCcccccCCCCccEEEeccC
Q 039042          216 MFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRC  255 (526)
Q Consensus       216 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c  255 (526)
                      .+++|++|+++++ .+..+......+..+++|+.|+|+++
T Consensus       168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N  206 (267)
T 3rw6_A          168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN  206 (267)
T ss_dssp             HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred             hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC
Confidence            4666777777653 44444321111345666666666655

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=94.15  E-value=0.018  Score=50.23  Aligned_cols=133  Identities=13%  Similarity=-0.045  Sum_probs=76.4

Q ss_pred             eehhHHHHHhccccccceecccccc-ccccccc-cc--ccccCCcccEEEEecCCCCCCchhhhhhccCcccccccccch
Q 039042           37 ICLKDWLILQLQGIEDLELHELQEQ-DVNYFAN-EL--VRVGSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNE  112 (526)
Q Consensus        37 ~~~~~~~~~~l~~~~~L~~l~l~~~-~~~~~~~-~~--~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~  112 (526)
                      ...++.+...+.....|+.++++.+ .+..... .+  .....++|++|+|++|.........+.               
T Consensus        22 ~~~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~---------------   86 (185)
T 1io0_A           22 TDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA---------------   86 (185)
T ss_dssp             CCHHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH---------------
T ss_pred             cHHHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHH---------------
Confidence            3345667778888888888888876 5543211 11  123457899999998864322111110               


Q ss_pred             hhhcccccccchhhhhhhhhhcccccccccccccccccccccCCcccEEEe--ccCCCceecCCccccc-ccccccccEE
Q 039042          113 LILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTL--YNCMNLRCLFSSCTVS-NNSFVRLQYI  189 (526)
Q Consensus       113 ~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L--~~c~~l~~l~p~~l~~-l~~l~~L~~L  189 (526)
                               ......+.|++|+|++|.+.+.-.......+...++|++|+|  ++|. ++.-....+++ +...++|++|
T Consensus        87 ---------~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L  156 (185)
T 1io0_A           87 ---------EMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKF  156 (185)
T ss_dssp             ---------HHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEE
T ss_pred             ---------HHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEE
Confidence                     011124679999999997764311111111456788999999  5554 33211111221 2245789999


Q ss_pred             eeecc
Q 039042          190 RIEKC  194 (526)
Q Consensus       190 ~l~~~  194 (526)
                      ++++|
T Consensus       157 ~L~~n  161 (185)
T 1io0_A          157 GYHFT  161 (185)
T ss_dssp             ECCCS
T ss_pred             eccCC
Confidence            99988

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	526
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.71
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.69
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.62
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.61
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.57
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.52
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.51
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.5
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.46
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.44
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.44
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.4
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.37
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.33
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.31
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.27
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.25
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.22
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.22
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.19
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.16
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.08
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.84
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.78
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.76
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.74
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.61
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.48
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.35
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.32
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.3
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.23
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.22
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.02
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.93
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.27
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	93.62
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	91.55
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	89.2
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	87.48

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=3.3e-16  Score=154.32  Aligned_cols=325  Identities=15%  Similarity=0.140  Sum_probs=196.5

Q ss_pred             hhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecc
Q 039042          126 FLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDN  205 (526)
Q Consensus       126 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~  205 (526)
                      .+.+|++|++++++++.+     ++ +..+++|++|++++| .++++.|     ++.+++|++|++++| .+..++.   
T Consensus        42 ~l~~l~~L~l~~~~I~~l-----~g-l~~L~nL~~L~Ls~N-~l~~l~~-----l~~L~~L~~L~L~~n-~i~~i~~---  105 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI-----DG-VEYLNNLTQINFSNN-QLTDITP-----LKNLTKLVDILMNNN-QIADITP---  105 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC-----TT-GGGCTTCCEEECCSS-CCCCCGG-----GTTCTTCCEEECCSS-CCCCCGG---
T ss_pred             HhCCCCEEECCCCCCCCc-----cc-cccCCCCCEEeCcCC-cCCCCcc-----ccCCccccccccccc-ccccccc---
Confidence            477888899988887754     12 557889999999887 4666532     347889999999888 4544322   


Q ss_pred             hhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCC------------cc--c
Q 039042          206 QEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTND------------LT--K  271 (526)
Q Consensus       206 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~------------~~--~  271 (526)
                              ++.+++|+.|++.++ ....++..    .....+..+....+ .+..........            ..  .
T Consensus       106 --------l~~l~~L~~L~~~~~-~~~~~~~~----~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (384)
T d2omza2         106 --------LANLTNLTGLTLFNN-QITDIDPL----KNLTNLNRLELSSN-TISDISALSGLTSLQQLSFGNQVTDLKPL  171 (384)
T ss_dssp             --------GTTCTTCCEEECCSS-CCCCCGGG----TTCTTCSEEEEEEE-EECCCGGGTTCTTCSEEEEEESCCCCGGG
T ss_pred             --------ccccccccccccccc-cccccccc----cccccccccccccc-cccccccccccccccccccccccchhhhh
Confidence                    267888888888764 33333222    13344444443322 111111100000            00  0


Q ss_pred             cccCCcceEEEeeccccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccc
Q 039042          272 KVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGM  350 (526)
Q Consensus       272 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~  350 (526)
                      .............+.. .  .......+++++.++++++..-.   ++  .....++|++|++..+ ...++  .  ...
T Consensus       172 ~~~~~~~~~~~~~~~~-~--~~~~~~~l~~~~~l~l~~n~i~~---~~--~~~~~~~L~~L~l~~n~l~~~~--~--l~~  239 (384)
T d2omza2         172 ANLTTLERLDISSNKV-S--DISVLAKLTNLESLIATNNQISD---IT--PLGILTNLDELSLNGNQLKDIG--T--LAS  239 (384)
T ss_dssp             TTCTTCCEEECCSSCC-C--CCGGGGGCTTCSEEECCSSCCCC---CG--GGGGCTTCCEEECCSSCCCCCG--G--GGG
T ss_pred             cccccccccccccccc-c--cccccccccccceeeccCCccCC---CC--cccccCCCCEEECCCCCCCCcc--h--hhc
Confidence            0111111111111100 0  11122356678888887764332   21  2455678888888733 22222  1  145


Q ss_pred             cccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccE
Q 039042          351 EVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLRE  429 (526)
Q Consensus       351 ~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~  429 (526)
                      +++|+.+++. +.+..++  .+..+++|++|+++++. +..++ .+..++.++.+++..+ .++.+.   ....+++++.
T Consensus       240 l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~-l~~~~-~~~~~~~l~~l~~~~n-~l~~~~---~~~~~~~l~~  311 (384)
T d2omza2         240 LTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQ-ISNIS-PLAGLTALTNLELNEN-QLEDIS---PISNLKNLTY  311 (384)
T ss_dssp             CTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSS-CCSCCG---GGGGCTTCSE
T ss_pred             ccccchhccccCccCCCC--cccccccCCEeeccCcc-cCCCC-cccccccccccccccc-cccccc---ccchhcccCe
Confidence            6788888888 7677664  36667889999988764 33332 3556778888888776 455543   4567789999


Q ss_pred             EEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCccccCCCCCC
Q 039042          430 MKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELS  509 (526)
Q Consensus       430 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~  509 (526)
                      |+++++ .+++++.             +..+++|++|++++| .++.++.   +..+++|++|++++| +++.++. ...
T Consensus       312 L~ls~n-~l~~l~~-------------l~~l~~L~~L~L~~n-~l~~l~~---l~~l~~L~~L~l~~N-~l~~l~~-l~~  371 (384)
T d2omza2         312 LTLYFN-NISDISP-------------VSSLTKLQRLFFANN-KVSDVSS---LANLTNINWLSAGHN-QISDLTP-LAN  371 (384)
T ss_dssp             EECCSS-CCSCCGG-------------GGGCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSS-CCCBCGG-GTT
T ss_pred             EECCCC-CCCCCcc-------------cccCCCCCEEECCCC-CCCCChh---HcCCCCCCEEECCCC-cCCCChh-hcc
Confidence            999885 4555532             235789999999986 6777662   567899999999876 6777764 455


Q ss_pred             CcccceEEecc
Q 039042          510 TPVLHKVQLNR  520 (526)
Q Consensus       510 ~~~L~~l~l~~  520 (526)
                      +++|+.|+++.
T Consensus       372 l~~L~~L~L~~  382 (384)
T d2omza2         372 LTRITQLGLND  382 (384)
T ss_dssp             CTTCSEEECCC
T ss_pred             CCCCCEeeCCC
Confidence            78999998863

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=6.2e-16  Score=152.32  Aligned_cols=189  Identities=14%  Similarity=0.119  Sum_probs=133.2

Q ss_pred             ccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCcccccccch
Q 039042          241 MLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLD  320 (526)
Q Consensus       241 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  320 (526)
                      ...+++++.+.++++ .+..+++.       ...++|++|+++++.+.. +.  ....+++|+.++++++....   ++ 
T Consensus       193 ~~~l~~~~~l~l~~n-~i~~~~~~-------~~~~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~---~~-  257 (384)
T d2omza2         193 LAKLTNLESLIATNN-QISDITPL-------GILTNLDELSLNGNQLKD-IG--TLASLTNLTDLDLANNQISN---LA-  257 (384)
T ss_dssp             GGGCTTCSEEECCSS-CCCCCGGG-------GGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCC---CG-
T ss_pred             cccccccceeeccCC-ccCCCCcc-------cccCCCCEEECCCCCCCC-cc--hhhcccccchhccccCccCC---CC-
Confidence            557888899998887 45555433       357789999998776532 21  23467889999998876432   22 


Q ss_pred             hHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccC
Q 039042          321 DFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSF  398 (526)
Q Consensus       321 ~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~  398 (526)
                       .+..+++|++|++++. ...++.    ...++.++.+.+. +.+..+.  .+..+++++.|+++++ .+..++ .+..+
T Consensus       258 -~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~l~~l~~~~n~l~~~~--~~~~~~~l~~L~ls~n-~l~~l~-~l~~l  328 (384)
T d2omza2         258 -PLSGLTKLTELKLGANQISNISP----LAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFN-NISDIS-PVSSL  328 (384)
T ss_dssp             -GGTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSS-CCSCCG-GGGGC
T ss_pred             -cccccccCCEeeccCcccCCCCc----ccccccccccccccccccccc--ccchhcccCeEECCCC-CCCCCc-ccccC
Confidence             4677889999998833 221111    1455778888888 6666653  4667889999999987 455553 36788


Q ss_pred             CCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCC
Q 039042          399 QNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNL  471 (526)
Q Consensus       399 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  471 (526)
                      ++|++|++++| +++.++   .+..+++|++|+++++ .++.++.             +..+++|+.|++++.
T Consensus       329 ~~L~~L~L~~n-~l~~l~---~l~~l~~L~~L~l~~N-~l~~l~~-------------l~~l~~L~~L~L~~N  383 (384)
T d2omza2         329 TKLQRLFFANN-KVSDVS---SLANLTNINWLSAGHN-QISDLTP-------------LANLTRITQLGLNDQ  383 (384)
T ss_dssp             TTCCEEECCSS-CCCCCG---GGGGCTTCCEEECCSS-CCCBCGG-------------GTTCTTCSEEECCCE
T ss_pred             CCCCEEECCCC-CCCCCh---hHcCCCCCCEEECCCC-cCCCChh-------------hccCCCCCEeeCCCC
Confidence            99999999998 677765   4567899999999885 5666643             225789999999863

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.62  E-value=1.2e-14  Score=138.49  Aligned_cols=173  Identities=13%  Similarity=0.121  Sum_probs=85.1

Q ss_pred             ccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccc
Q 039042          184 VRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFK  263 (526)
Q Consensus       184 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~  263 (526)
                      +++++|++++| .++.++...         +..+++|++|+++++. +..++...  +..+++|++|+++++ +++.++.
T Consensus        31 ~~l~~L~Ls~N-~i~~l~~~~---------f~~l~~L~~L~l~~n~-~~~i~~~~--f~~l~~L~~L~l~~n-~l~~l~~   96 (305)
T d1xkua_          31 PDTALLDLQNN-KITEIKDGD---------FKNLKNLHTLILINNK-ISKISPGA--FAPLVKLERLYLSKN-QLKELPE   96 (305)
T ss_dssp             TTCCEEECCSS-CCCCBCTTT---------TTTCTTCCEEECCSSC-CCCBCTTT--TTTCTTCCEEECCSS-CCSBCCS
T ss_pred             CCCCEEECcCC-cCCCcChhH---------hhcccccccccccccc-ccccchhh--hhCCCccCEecccCC-ccCcCcc
Confidence            46777777776 566665421         1456777777777653 33443221  556777777777777 4665554


Q ss_pred             cccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-ccccc
Q 039042          264 RTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLP  342 (526)
Q Consensus       264 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~  342 (526)
                      .        ..+.+..|.+..+.+.. +..........+..+....+.... .......+..+++|+.+.+.++ ...++
T Consensus        97 ~--------~~~~l~~L~~~~n~l~~-l~~~~~~~~~~~~~l~~~~n~~~~-~~~~~~~~~~l~~L~~l~l~~n~l~~l~  166 (305)
T d1xkua_          97 K--------MPKTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKS-SGIENGAFQGMKKLSYIRIADTNITTIP  166 (305)
T ss_dssp             S--------CCTTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCG-GGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred             c--------hhhhhhhhhccccchhh-hhhhhhhccccccccccccccccc-cCCCccccccccccCccccccCCccccC
Confidence            3        34566666666443321 111111123344455554433222 1122234555666666666522 22222


Q ss_pred             CCCcCccccccceEEEec-cCceeeccccccccCcccEEEEecc
Q 039042          343 KEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNC  385 (526)
Q Consensus       343 ~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c  385 (526)
                      .     ..+++|++|++. +......+..+..++.++.|+++++
T Consensus       167 ~-----~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n  205 (305)
T d1xkua_         167 Q-----GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN  205 (305)
T ss_dssp             S-----SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS
T ss_pred             c-----ccCCccCEEECCCCcCCCCChhHhhccccccccccccc
Confidence            1     123445555555 4444444444444444444444444

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.61  E-value=1.1e-15  Score=146.35  Aligned_cols=248  Identities=11%  Similarity=0.039  Sum_probs=144.1

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      ..+++.|+|+++++.... ..|.+ ++++++|++|+|++|+.+...+|..++   .+++|++|++++| .+..++...  
T Consensus        49 ~~~v~~L~L~~~~l~g~~-~lp~~-l~~L~~L~~L~Ls~~N~l~g~iP~~i~---~L~~L~~L~Ls~N-~l~~~~~~~--  120 (313)
T d1ogqa_          49 TYRVNNLDLSGLNLPKPY-PIPSS-LANLPYLNFLYIGGINNLVGPIPPAIA---KLTQLHYLYITHT-NVSGAIPDF--  120 (313)
T ss_dssp             CCCEEEEEEECCCCSSCE-ECCGG-GGGCTTCSEEEEEEETTEESCCCGGGG---GCTTCSEEEEEEE-CCEEECCGG--
T ss_pred             cEEEEEEECCCCCCCCCC-CCChH-HhcCccccccccccccccccccccccc---cccccchhhhccc-ccccccccc--
Confidence            346888999998766321 12455 889999999999987767644577766   7999999999999 454443322  


Q ss_pred             hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCc-ceEEEeec
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNL-EELIVDAE  285 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L-~~L~l~~~  285 (526)
                             ...+++|++++++.+.....+|..   +..+++|+.++++++..-..+|...      ..+.++ +.+.++++
T Consensus       121 -------~~~~~~L~~l~l~~N~~~~~~p~~---l~~l~~L~~l~l~~n~l~~~ip~~~------~~l~~l~~~l~~~~n  184 (313)
T d1ogqa_         121 -------LSQIKTLVTLDFSYNALSGTLPPS---ISSLPNLVGITFDGNRISGAIPDSY------GSFSKLFTSMTISRN  184 (313)
T ss_dssp             -------GGGCTTCCEEECCSSEEESCCCGG---GGGCTTCCEEECCSSCCEEECCGGG------GCCCTTCCEEECCSS
T ss_pred             -------ccchhhhcccccccccccccCchh---hccCcccceeecccccccccccccc------ccccccccccccccc
Confidence                   156889999999987666666655   8899999999999985444555444      234444 66777766


Q ss_pred             cccccceecccc-ccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-ec-cccccCCCcCccccccceEEEec-c
Q 039042          286 YIITNKFIFSED-LLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GY-SDWLPKEKVENGMEVIIRRVFRC-Y  361 (526)
Q Consensus       286 ~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~-~~~~~~~~~~~~~~~~L~~L~l~-~  361 (526)
                      .+..   ..+.. .......+++..+....  ..+. .+..+++++.+.+. +. ...++.    ...+++|+.|+++ +
T Consensus       185 ~l~~---~~~~~~~~l~~~~l~l~~~~~~~--~~~~-~~~~~~~l~~l~~~~~~l~~~~~~----~~~~~~L~~L~Ls~N  254 (313)
T d1ogqa_         185 RLTG---KIPPTFANLNLAFVDLSRNMLEG--DASV-LFGSDKNTQKIHLAKNSLAFDLGK----VGLSKNLNGLDLRNN  254 (313)
T ss_dssp             EEEE---ECCGGGGGCCCSEEECCSSEEEE--CCGG-GCCTTSCCSEEECCSSEECCBGGG----CCCCTTCCEEECCSS
T ss_pred             cccc---ccccccccccccccccccccccc--cccc-cccccccccccccccccccccccc----cccccccccccCccC
Confidence            5532   11111 11133455555544333  2222 44556666666666 22 111111    1333455555555 5


Q ss_pred             CceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccC
Q 039042          362 DLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYC  409 (526)
Q Consensus       362 ~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c  409 (526)
                      .+....+..+..+++|++|+++++.....+| ....+++|+.+++.+.
T Consensus       255 ~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP-~~~~L~~L~~l~l~~N  301 (313)
T d1ogqa_         255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN  301 (313)
T ss_dssp             CCEECCCGGGGGCTTCCEEECCSSEEEEECC-CSTTGGGSCGGGTCSS
T ss_pred             eecccCChHHhCCCCCCEEECcCCcccccCC-CcccCCCCCHHHhCCC
Confidence            5543333444555555555555543222332 2333444444444443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.57  E-value=6.2e-14  Score=133.36  Aligned_cols=245  Identities=14%  Similarity=0.089  Sum_probs=172.3

Q ss_pred             ccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccc
Q 039042          217 FPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSE  296 (526)
Q Consensus       217 l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  296 (526)
                      .+++++|+++++ .++.++...  +.++++|++|++++|. +..+++..+     ..+++|++|+++++.+    ..+|.
T Consensus        30 ~~~l~~L~Ls~N-~i~~l~~~~--f~~l~~L~~L~l~~n~-~~~i~~~~f-----~~l~~L~~L~l~~n~l----~~l~~   96 (305)
T d1xkua_          30 PPDTALLDLQNN-KITEIKDGD--FKNLKNLHTLILINNK-ISKISPGAF-----APLVKLERLYLSKNQL----KELPE   96 (305)
T ss_dssp             CTTCCEEECCSS-CCCCBCTTT--TTTCTTCCEEECCSSC-CCCBCTTTT-----TTCTTCCEEECCSSCC----SBCCS
T ss_pred             CCCCCEEECcCC-cCCCcChhH--hhcccccccccccccc-ccccchhhh-----hCCCccCEecccCCcc----CcCcc
Confidence            467999999985 788887653  7789999999999994 555654433     4789999999998765    44676


Q ss_pred             cccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec---cccccCCCcCccccccceEEEec-cCceeecccccc
Q 039042          297 DLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY---SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESS  372 (526)
Q Consensus       297 ~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~---~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~  372 (526)
                      ...+.++.|++..+...   .++...+.....+..+.....   ........  ...+++|+.+.+. +.+..++...  
T Consensus        97 ~~~~~l~~L~~~~n~l~---~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~--~~~l~~L~~l~l~~n~l~~l~~~~--  169 (305)
T d1xkua_          97 KMPKTLQELRVHENEIT---KVRKSVFNGLNQMIVVELGTNPLKSSGIENGA--FQGMKKLSYIRIADTNITTIPQGL--  169 (305)
T ss_dssp             SCCTTCCEEECCSSCCC---BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG--GGGCTTCCEEECCSSCCCSCCSSC--
T ss_pred             chhhhhhhhhccccchh---hhhhhhhhccccccccccccccccccCCCccc--cccccccCccccccCCccccCccc--
Confidence            67788999999876543   355656777778888777632   11111222  2566788888888 6676664332  


Q ss_pred             ccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccc
Q 039042          373 IMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDA  452 (526)
Q Consensus       373 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~  452 (526)
                       +++|+.|+++++......+..+..++.+++|+++++ .+..++. ..+..+++|++|+++++ .+..++...       
T Consensus       170 -~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~L~~lp~~l-------  238 (305)
T d1xkua_         170 -PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDN-GSLANTPHLRELHLNNN-KLVKVPGGL-------  238 (305)
T ss_dssp             -CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECT-TTGGGSTTCCEEECCSS-CCSSCCTTT-------
T ss_pred             -CCccCEEECCCCcCCCCChhHhhccccccccccccc-ccccccc-ccccccccceeeecccc-ccccccccc-------
Confidence             578888888887666555555667788888888876 5666653 35567788888888886 566666432       


Q ss_pred             cCCCeeeeCccCeEecCCCccccccCCCC-----ccccCCCccEEeEecCC
Q 039042          453 AKDEVIAFSELNELKLLNLKSLRSFYSGN-----RALNFPSLERLLVDDCT  498 (526)
Q Consensus       453 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-----~~~~~~~L~~L~l~~C~  498 (526)
                           ..+++|++|+++++ +++.++...     .....++|+.|++++++
T Consensus       239 -----~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         239 -----ADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             -----TTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             -----ccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence                 25788888888874 577775432     12345778888888865

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.52  E-value=2.6e-14  Score=136.59  Aligned_cols=128  Identities=13%  Similarity=0.125  Sum_probs=77.3

Q ss_pred             cccccEEeeecccccc--EEEeecchhhhcccccccccccceeecccCcccc-ccccCcccccCCCCccEEEeccCCCce
Q 039042          183 FVRLQYIRIEKCHVLE--ELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLT-SFCTGDVHMLEFPSLKELWISRCPEFM  259 (526)
Q Consensus       183 l~~L~~L~l~~~~~l~--~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~l~~L~~L~l~~c~~l~  259 (526)
                      -.++++|+++++..-.  .+|..          ++.+++|++|++++++.+. .+|..   ++++++|++|+++++ ++.
T Consensus        49 ~~~v~~L~L~~~~l~g~~~lp~~----------l~~L~~L~~L~Ls~~N~l~g~iP~~---i~~L~~L~~L~Ls~N-~l~  114 (313)
T d1ogqa_          49 TYRVNNLDLSGLNLPKPYPIPSS----------LANLPYLNFLYIGGINNLVGPIPPA---IAKLTQLHYLYITHT-NVS  114 (313)
T ss_dssp             CCCEEEEEEECCCCSSCEECCGG----------GGGCTTCSEEEEEEETTEESCCCGG---GGGCTTCSEEEEEEE-CCE
T ss_pred             cEEEEEEECCCCCCCCCCCCChH----------HhcCccccccccccccccccccccc---cccccccchhhhccc-ccc
Confidence            3478889998873222  23333          3678888888888766655 56665   778888888888888 455


Q ss_pred             eccccccCCccccccCCcceEEEeeccccccceecc--ccccccccEEEeeeCCcccccccchhHhhcCCCc-cEEEEe
Q 039042          260 VRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFS--EDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTL-KVLQIE  335 (526)
Q Consensus       260 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L-~~L~l~  335 (526)
                      ..++...     ..+.+|+.++++.+.+..   .+|  ...+++|+.++++++....  .+|. .+..+.++ +.+.+.
T Consensus       115 ~~~~~~~-----~~~~~L~~l~l~~N~~~~---~~p~~l~~l~~L~~l~l~~n~l~~--~ip~-~~~~l~~l~~~l~~~  182 (313)
T d1ogqa_         115 GAIPDFL-----SQIKTLVTLDFSYNALSG---TLPPSISSLPNLVGITFDGNRISG--AIPD-SYGSFSKLFTSMTIS  182 (313)
T ss_dssp             EECCGGG-----GGCTTCCEEECCSSEEES---CCCGGGGGCTTCCEEECCSSCCEE--ECCG-GGGCCCTTCCEEECC
T ss_pred             ccccccc-----cchhhhcccccccccccc---cCchhhccCcccceeecccccccc--cccc-ccccccccccccccc
Confidence            5544332     357778888777554421   222  2345667777776665443  3443 23334443 444444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.51  E-value=4e-13  Score=129.98  Aligned_cols=70  Identities=16%  Similarity=0.143  Sum_probs=47.6

Q ss_pred             cccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCcccc
Q 039042          424 LVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGF  503 (526)
Q Consensus       424 l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l  503 (526)
                      +++|++|++++| .+.+++.               .+++|++|+++++ .++++|..     +++|++|++++|+ ++++
T Consensus       283 ~~~L~~L~Ls~N-~l~~lp~---------------~~~~L~~L~L~~N-~L~~l~~~-----~~~L~~L~L~~N~-L~~l  339 (353)
T d1jl5a_         283 PPSLEELNVSNN-KLIELPA---------------LPPRLERLIASFN-HLAEVPEL-----PQNLKQLHVEYNP-LREF  339 (353)
T ss_dssp             CTTCCEEECCSS-CCSCCCC---------------CCTTCCEEECCSS-CCSCCCCC-----CTTCCEEECCSSC-CSSC
T ss_pred             CCCCCEEECCCC-ccCcccc---------------ccCCCCEEECCCC-cCCccccc-----cCCCCEEECcCCc-CCCC
Confidence            467888888775 3555553               2578888888764 57777653     4678888888875 8887


Q ss_pred             CCCCCCCcccceEEec
Q 039042          504 SRGELSTPVLHKVQLN  519 (526)
Q Consensus       504 ~~~~~~~~~L~~l~l~  519 (526)
                      |..   +.+|+.|++.
T Consensus       340 p~~---~~~L~~L~~~  352 (353)
T d1jl5a_         340 PDI---PESVEDLRMN  352 (353)
T ss_dssp             CCC---CTTCCEEECC
T ss_pred             Ccc---ccccCeeECc
Confidence            752   3457777653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.50  E-value=9.9e-13  Score=127.18  Aligned_cols=93  Identities=18%  Similarity=0.191  Sum_probs=58.8

Q ss_pred             hhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchh
Q 039042          128 EKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQE  207 (526)
Q Consensus       128 ~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~  207 (526)
                      .++++|++++++++.+    |+    ..++|++|+++++ .++.+ |.      .+.+|++|++.++ .+..++.     
T Consensus        38 ~~l~~LdLs~~~L~~l----p~----~~~~L~~L~Ls~N-~l~~l-p~------~~~~L~~L~l~~n-~l~~l~~-----   95 (353)
T d1jl5a_          38 RQAHELELNNLGLSSL----PE----LPPHLESLVASCN-SLTEL-PE------LPQSLKSLLVDNN-NLKALSD-----   95 (353)
T ss_dssp             HTCSEEECTTSCCSCC----CS----CCTTCSEEECCSS-CCSSC-CC------CCTTCCEEECCSS-CCSCCCS-----
T ss_pred             cCCCEEEeCCCCCCCC----CC----CCCCCCEEECCCC-CCccc-cc------chhhhhhhhhhhc-ccchhhh-----
Confidence            4577788888877655    32    3567888888764 45554 54      3457777777776 4444421     


Q ss_pred             hhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccC
Q 039042          208 EERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRC  255 (526)
Q Consensus       208 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c  255 (526)
                              -.+.|++|+++++ .+..++.    .+.+++|+.|+++++
T Consensus        96 --------lp~~L~~L~L~~n-~l~~lp~----~~~l~~L~~L~l~~~  130 (353)
T d1jl5a_          96 --------LPPLLEYLGVSNN-QLEKLPE----LQNSSFLKIIDVDNN  130 (353)
T ss_dssp             --------CCTTCCEEECCSS-CCSSCCC----CTTCTTCCEEECCSS
T ss_pred             --------hcccccccccccc-ccccccc----hhhhccceeeccccc
Confidence                    1235788888764 4666653    336777888887766

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.6e-13  Score=126.19  Aligned_cols=197  Identities=14%  Similarity=0.048  Sum_probs=117.5

Q ss_pred             cCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccc
Q 039042          154 GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTS  233 (526)
Q Consensus       154 ~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~  233 (526)
                      ....+.+++.++ +.++.+ |..+.     +++++|+|++| .+..++....         ..+++|++|+++++ .++.
T Consensus         8 ~~~~~~~v~C~~-~~L~~i-P~~lp-----~~l~~L~Ls~N-~i~~l~~~~f---------~~l~~L~~L~L~~N-~l~~   69 (266)
T d1p9ag_           8 KVASHLEVNCDK-RNLTAL-PPDLP-----KDTTILHLSEN-LLYTFSLATL---------MPYTRLTQLNLDRA-ELTK   69 (266)
T ss_dssp             CSTTCCEEECTT-SCCSSC-CSCCC-----TTCCEEECTTS-CCSEEEGGGG---------TTCTTCCEEECTTS-CCCE
T ss_pred             ccCCCeEEEccC-CCCCee-CcCcC-----cCCCEEECcCC-cCCCcCHHHh---------hccccccccccccc-cccc
Confidence            344455555555 346665 55332     47899999988 6777764321         56888999998875 6666


Q ss_pred             cccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCcc
Q 039042          234 FCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDEL  313 (526)
Q Consensus       234 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  313 (526)
                      ++..    +.+++|++|+++++ ++...+..+      ..+++|+.|+++++.+.. +.......+.++++|+++++.  
T Consensus        70 l~~~----~~l~~L~~L~Ls~N-~l~~~~~~~------~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~l~~L~l~~n~--  135 (266)
T d1p9ag_          70 LQVD----GTLPVLGTLDLSHN-QLQSLPLLG------QTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNE--  135 (266)
T ss_dssp             EECC----SCCTTCCEEECCSS-CCSSCCCCT------TTCTTCCEEECCSSCCCC-CCSSTTTTCTTCCEEECTTSC--
T ss_pred             cccc----cccccccccccccc-ccccccccc------ccccccccccccccccce-eeccccccccccccccccccc--
Confidence            6533    36888888888887 555554433      356677777766543321 111111233344444444332  


Q ss_pred             cccccchhHhhcCCCccEEEEeeccccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCccccc
Q 039042          314 TTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLV  392 (526)
Q Consensus       314 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~  392 (526)
                                              ...++...+  ..+++++.+++. +.+..++++.+..+++|++|+++++. +..+|
T Consensus       136 ------------------------l~~l~~~~~--~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-L~~lp  188 (266)
T d1p9ag_         136 ------------------------LKTLPPGLL--TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIP  188 (266)
T ss_dssp             ------------------------CCCCCTTTT--TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCCCC
T ss_pred             ------------------------cceeccccc--cccccchhcccccccccccCccccccccccceeecccCC-CcccC
Confidence                                    222222221  334556666666 66666666667777778888887764 56777


Q ss_pred             CCCccCCCcCEEEEccC
Q 039042          393 PSSTSFQNLTSLEISYC  409 (526)
Q Consensus       393 ~~~~~~~~L~~L~l~~c  409 (526)
                      ..+...++|+.|++++.
T Consensus       189 ~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         189 KGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             TTTTTTCCCSEEECCSC
T ss_pred             hhHCCCCCCCEEEecCC
Confidence            66667777777777764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.9e-13  Score=125.03  Aligned_cols=199  Identities=12%  Similarity=0.081  Sum_probs=104.2

Q ss_pred             CcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccc
Q 039042          156 QNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFC  235 (526)
Q Consensus       156 ~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~  235 (526)
                      +++++|+|++| .++.+++.++.   ++++|++|+++++ .+..++....         ..++.++++.+.....+..++
T Consensus        32 ~~~~~L~Ls~N-~i~~i~~~~f~---~l~~L~~L~ls~n-~l~~i~~~~~---------~~~~~~~~l~~~~~~~~~~l~   97 (284)
T d1ozna_          32 AASQRIFLHGN-RISHVPAASFR---ACRNLTILWLHSN-VLARIDAAAF---------TGLALLEQLDLSDNAQLRSVD   97 (284)
T ss_dssp             TTCSEEECTTS-CCCEECTTTTT---TCTTCCEEECCSS-CCCEECTTTT---------TTCTTCCEEECCSCTTCCCCC
T ss_pred             CCCCEEECcCC-cCCCCCHHHhh---ccccccccccccc-cccccccccc---------ccccccccccccccccccccc
Confidence            55677777775 35555444444   6777777777766 4555443221         345666666666555565554


Q ss_pred             cCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccc---cccccccEEEeeeCCc
Q 039042          236 TGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSE---DLLCKLKCLDVEFVDE  312 (526)
Q Consensus       236 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~  312 (526)
                      ...  +.++++|++|+++++. +..++....     ...++|+.++++++.+.    .++.   ..+++|++|+++++. 
T Consensus        98 ~~~--~~~l~~L~~L~l~~n~-~~~~~~~~~-----~~~~~L~~l~l~~N~l~----~i~~~~f~~~~~L~~L~l~~N~-  164 (284)
T d1ozna_          98 PAT--FHGLGRLHTLHLDRCG-LQELGPGLF-----RGLAALQYLYLQDNALQ----ALPDDTFRDLGNLTHLFLHGNR-  164 (284)
T ss_dssp             TTT--TTTCTTCCEEECTTSC-CCCCCTTTT-----TTCTTCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSC-
T ss_pred             chh--hcccccCCEEecCCcc-ccccccccc-----chhcccchhhhcccccc----ccChhHhccccchhhcccccCc-
Confidence            432  5567777777777663 333333222     24556666666655442    1221   123445555555443 


Q ss_pred             ccccccchhHhhcCCCccEEEEeeccccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccc
Q 039042          313 LTTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINL  391 (526)
Q Consensus       313 l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l  391 (526)
                      ++  .++...+.++                         ++|+++.+. +.+..+.+..+..+++|++|+++++......
T Consensus       165 l~--~l~~~~f~~l-------------------------~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~  217 (284)
T d1ozna_         165 IS--SVPERAFRGL-------------------------HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (284)
T ss_dssp             CC--EECTTTTTTC-------------------------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             cc--ccchhhhccc-------------------------cccchhhhhhccccccChhHhhhhhhccccccccccccccc
Confidence            22  2223333344                         455555555 4555555555566666666666655432222


Q ss_pred             cCCCccCCCcCEEEEcc
Q 039042          392 VPSSTSFQNLTSLEISY  408 (526)
Q Consensus       392 ~~~~~~~~~L~~L~l~~  408 (526)
                      +..+..+++|++|++++
T Consensus       218 ~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         218 TEALAPLRALQYLRLND  234 (284)
T ss_dssp             HHHHTTCTTCCEEECCS
T ss_pred             ccccccccccCEEEecC
Confidence            22334556666666665

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.6e-13  Score=127.58  Aligned_cols=189  Identities=14%  Similarity=0.091  Sum_probs=90.6

Q ss_pred             cccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccccccchhhhhhhhhhcc
Q 039042           56 HELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEKLEKLEL  135 (526)
Q Consensus        56 l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L  135 (526)
                      .+.++.+.+.+|..+    .+++++|+|++|.....|...+.+++                            +|++|+|
T Consensus        15 v~C~~~~L~~iP~~l----p~~l~~L~Ls~N~i~~l~~~~f~~l~----------------------------~L~~L~L   62 (266)
T d1p9ag_          15 VNCDKRNLTALPPDL----PKDTTILHLSENLLYTFSLATLMPYT----------------------------RLTQLNL   62 (266)
T ss_dssp             EECTTSCCSSCCSCC----CTTCCEEECTTSCCSEEEGGGGTTCT----------------------------TCCEEEC
T ss_pred             EEccCCCCCeeCcCc----CcCCCEEECcCCcCCCcCHHHhhccc----------------------------ccccccc
Confidence            356666677777632    25799999999876655655555544                            4555555


Q ss_pred             cccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccc
Q 039042          136 RSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIV  215 (526)
Q Consensus       136 ~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~  215 (526)
                      ++|.++.+..      +..+++|++|++++|. ++.. |..+.   .+++|++|+++++ .+..++....         .
T Consensus        63 ~~N~l~~l~~------~~~l~~L~~L~Ls~N~-l~~~-~~~~~---~l~~L~~L~l~~~-~~~~~~~~~~---------~  121 (266)
T d1p9ag_          63 DRAELTKLQV------DGTLPVLGTLDLSHNQ-LQSL-PLLGQ---TLPALTVLDVSFN-RLTSLPLGAL---------R  121 (266)
T ss_dssp             TTSCCCEEEC------CSCCTTCCEEECCSSC-CSSC-CCCTT---TCTTCCEEECCSS-CCCCCCSSTT---------T
T ss_pred             cccccccccc------cccccccccccccccc-cccc-ccccc---ccccccccccccc-ccceeecccc---------c
Confidence            5554443311      1244555555555542 2221 22222   4555555555554 2222221110         2


Q ss_pred             cccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceecc
Q 039042          216 MFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFS  295 (526)
Q Consensus       216 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  295 (526)
                      .+.++++|+++++ .+..++...  ...+++|+.|+++++ +++.++...+.     .+++|++|++++|.+.    .+|
T Consensus       122 ~l~~l~~L~l~~n-~l~~l~~~~--~~~l~~l~~l~l~~N-~l~~~~~~~~~-----~l~~L~~L~Ls~N~L~----~lp  188 (266)
T d1p9ag_         122 GLGELQELYLKGN-ELKTLPPGL--LTPTPKLEKLSLANN-NLTELPAGLLN-----GLENLDTLLLQENSLY----TIP  188 (266)
T ss_dssp             TCTTCCEEECTTS-CCCCCCTTT--TTTCTTCCEEECTTS-CCSCCCTTTTT-----TCTTCCEEECCSSCCC----CCC
T ss_pred             ccccccccccccc-ccceecccc--ccccccchhcccccc-cccccCccccc-----cccccceeecccCCCc----ccC
Confidence            3445555555542 334443331  334555555555555 44444443221     3555555555544432    122


Q ss_pred             cc--ccccccEEEeeeC
Q 039042          296 ED--LLCKLKCLDVEFV  310 (526)
Q Consensus       296 ~~--~~~~L~~L~l~~~  310 (526)
                      .+  .+++|+.|+++++
T Consensus       189 ~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         189 KGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             TTTTTTCCCSEEECCSC
T ss_pred             hhHCCCCCCCEEEecCC
Confidence            22  2345555555544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.4e-12  Score=120.76  Aligned_cols=212  Identities=12%  Similarity=0.046  Sum_probs=132.2

Q ss_pred             CceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccccCcccccCCCCc
Q 039042          168 NLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSL  247 (526)
Q Consensus       168 ~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L  247 (526)
                      .++.+ |..+.     .++++|+|++| .++.++...+         ..+++|++|+++++ .+..++...  ...++.+
T Consensus        22 ~L~~i-P~~ip-----~~~~~L~Ls~N-~i~~i~~~~f---------~~l~~L~~L~ls~n-~l~~i~~~~--~~~~~~~   82 (284)
T d1ozna_          22 GLQAV-PVGIP-----AASQRIFLHGN-RISHVPAASF---------RACRNLTILWLHSN-VLARIDAAA--FTGLALL   82 (284)
T ss_dssp             CCSSC-CTTCC-----TTCSEEECTTS-CCCEECTTTT---------TTCTTCCEEECCSS-CCCEECTTT--TTTCTTC
T ss_pred             CCCcc-CCCCC-----CCCCEEECcCC-cCCCCCHHHh---------hccccccccccccc-ccccccccc--ccccccc
Confidence            45555 55433     36788888887 6777764321         46778888888763 555554442  4556777


Q ss_pred             cEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCcccccccchhHhhcCC
Q 039042          248 KELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFP  327 (526)
Q Consensus       248 ~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~  327 (526)
                      +.+.+.....+..+++..+     ..+++|+.|+++.+.+.                            .++...+...+
T Consensus        83 ~~l~~~~~~~~~~l~~~~~-----~~l~~L~~L~l~~n~~~----------------------------~~~~~~~~~~~  129 (284)
T d1ozna_          83 EQLDLSDNAQLRSVDPATF-----HGLGRLHTLHLDRCGLQ----------------------------ELGPGLFRGLA  129 (284)
T ss_dssp             CEEECCSCTTCCCCCTTTT-----TTCTTCCEEECTTSCCC----------------------------CCCTTTTTTCT
T ss_pred             cccccccccccccccchhh-----cccccCCEEecCCcccc----------------------------cccccccchhc
Confidence            7777666556665544432     24566666666544331                            11122333344


Q ss_pred             CccEEEEeec-cccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEE
Q 039042          328 TLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLE  405 (526)
Q Consensus       328 ~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~  405 (526)
                      +|+.+++..+ ...++...+  ...++|+.|++. +.+..+++..+..+++|+.++++++......+..+..+++|++|+
T Consensus       130 ~L~~l~l~~N~l~~i~~~~f--~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~  207 (284)
T d1ozna_         130 ALQYLYLQDNALQALPDDTF--RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY  207 (284)
T ss_dssp             TCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             ccchhhhccccccccChhHh--ccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccc
Confidence            4555555422 223332222  344667777777 777888788888889999999988865554556677888899999


Q ss_pred             EccCCCcccccchHHHhhcccccEEEEccc
Q 039042          406 ISYCNGLKNVLTFSIAKTLVRLREMKIESC  435 (526)
Q Consensus       406 l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c  435 (526)
                      ++++ .+..++. ..++.+++|+.|++++.
T Consensus       208 l~~N-~i~~~~~-~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         208 LFAN-NLSALPT-EALAPLRALQYLRLNDN  235 (284)
T ss_dssp             CCSS-CCSCCCH-HHHTTCTTCCEEECCSS
T ss_pred             cccc-ccccccc-cccccccccCEEEecCC
Confidence            9886 5666543 46677888999988773

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.1e-13  Score=130.08  Aligned_cols=37  Identities=14%  Similarity=0.228  Sum_probs=14.7

Q ss_pred             CCCcCEEEEccCCCcccccchHHHhhcccccEEEEccc
Q 039042          398 FQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESC  435 (526)
Q Consensus       398 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c  435 (526)
                      +++|++|++++|..+++.... .++.+++|+.|++++|
T Consensus       199 ~~~L~~L~L~~C~~i~~~~l~-~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         199 LNYLQHLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCCEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTS
T ss_pred             cCcCCEEECCCCCCCChHHHH-HHhcCCCCCEEeeeCC
Confidence            344444444444444332211 1233444444444443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.4e-11  Score=110.90  Aligned_cols=83  Identities=20%  Similarity=0.157  Sum_probs=43.9

Q ss_pred             CCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCcccccccchhHhh
Q 039042          245 PSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQ  324 (526)
Q Consensus       245 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~  324 (526)
                      +++++|+++++ +++.++...+     ..+++|++|+++++.+...+.......+++++++.+..+..+.  ..+...+.
T Consensus        29 ~~l~~L~Ls~n-~i~~l~~~~f-----~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~--~~~~~~~~  100 (242)
T d1xwdc1          29 RNAIELRFVLT-KLRVIQKGAF-----SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL--YINPEAFQ  100 (242)
T ss_dssp             SCCSEEEEESC-CCCEECTTTT-----TTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC--EECTTSEE
T ss_pred             CCCCEEECcCC-cCCccChhHh-----hccchhhhhhhccccccceeecccccccccccccccccccccc--cccccccc
Confidence            45666666655 4555554322     2456666666665544221111122245566666666555554  34444566


Q ss_pred             cCCCccEEEEe
Q 039042          325 RFPTLKVLQIE  335 (526)
Q Consensus       325 ~l~~L~~L~l~  335 (526)
                      ++++|+.+.+.
T Consensus       101 ~l~~L~~l~l~  111 (242)
T d1xwdc1         101 NLPNLQYLLIS  111 (242)
T ss_dssp             CCTTCCEEEEE
T ss_pred             ccccccccccc
Confidence            66777777776

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5.5e-14  Score=132.03  Aligned_cols=188  Identities=16%  Similarity=0.090  Sum_probs=94.2

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      ..+|++|++++|.+........   +..+++|++|.+++|. +.+..+..++   .+++|++|++++|..+.......  
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l---~~~c~~L~~L~L~~~~-l~~~~~~~l~---~~~~L~~L~Ls~c~~itd~~l~~--  115 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGI---LSQCSKLQNLSLEGLR-LSDPIVNTLA---KNSNLVRLNLSGCSGFSEFALQT--  115 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHH---HTTBCCCSEEECTTCB-CCHHHHHHHT---TCTTCSEEECTTCBSCCHHHHHH--
T ss_pred             CCCCCEEECCCCccCHHHHHHH---HHhCCCcccccccccC-CCcHHHHHHh---cCCCCcCccccccccccccccch--
Confidence            4567777777775543211111   3367777777777774 3222233333   56777777777775553211100  


Q ss_pred             hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCC-ceeccccccCCccccccCCcceEEEeec
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPE-FMVRFKRTTNDLTKKVFPNLEELIVDAE  285 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~-l~~~~~~~~~~~~~~~l~~L~~L~l~~~  285 (526)
                            ....+++|++|++++|..+.+-.........+++|+.|.+++|.. +.......    +...+++|++|++++|
T Consensus       116 ------l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~----l~~~~~~L~~L~L~~~  185 (284)
T d2astb2         116 ------LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST----LVRRCPNLVHLDLSDS  185 (284)
T ss_dssp             ------HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH----HHHHCTTCSEEECTTC
T ss_pred             ------hhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccc----cccccccccccccccc
Confidence                  013567777777777765543211100022346777777776532 22111000    1134566777776643


Q ss_pred             cccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe
Q 039042          286 YIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE  335 (526)
Q Consensus       286 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~  335 (526)
                      ...++...-....+++|++|++++|..++  ......+.++++|+.|++.
T Consensus       186 ~~itd~~~~~l~~~~~L~~L~L~~C~~i~--~~~l~~L~~~~~L~~L~l~  233 (284)
T d2astb2         186 VMLKNDCFQEFFQLNYLQHLSLSRCYDII--PETLLELGEIPTLKTLQVF  233 (284)
T ss_dssp             TTCCGGGGGGGGGCTTCCEEECTTCTTCC--GGGGGGGGGCTTCCEEECT
T ss_pred             cCCCchhhhhhcccCcCCEEECCCCCCCC--hHHHHHHhcCCCCCEEeee
Confidence            22111111112245667777777666665  2222234556666666665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.27  E-value=2e-11  Score=110.24  Aligned_cols=209  Identities=15%  Similarity=0.180  Sum_probs=117.0

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      +.++..++++.+++++..   .   ...+++|+.|.+.+|. ++++ + .   ++.+++|++|++++| .+..+..    
T Consensus        18 l~~~~~~~l~~~~~~d~~---~---~~~l~~L~~L~l~~~~-i~~l-~-~---l~~l~~L~~L~ls~n-~i~~~~~----   80 (227)
T d1h6ua2          18 LANAIKIAAGKSNVTDTV---T---QADLDGITTLSAFGTG-VTTI-E-G---VQYLNNLIGLELKDN-QITDLAP----   80 (227)
T ss_dssp             HHHHHHHHTTCSSTTSEE---C---HHHHHTCCEEECTTSC-CCCC-T-T---GGGCTTCCEEECCSS-CCCCCGG----
T ss_pred             HHHHHHHHhCCCCcCCcC---C---HHHcCCcCEEECCCCC-CCcc-h-h---HhcCCCCcEeecCCc-eeecccc----
Confidence            555566666666665442   1   2357788888888774 4444 2 2   337888888888887 4443321    


Q ss_pred             hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY  286 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  286 (526)
                             +..+++|++++++++ .++.++    .+..+++|+.+.+++|.. ......       ...+.++.+.++++.
T Consensus        81 -------l~~l~~l~~l~~~~n-~~~~i~----~l~~l~~L~~l~l~~~~~-~~~~~~-------~~~~~~~~l~~~~~~  140 (227)
T d1h6ua2          81 -------LKNLTKITELELSGN-PLKNVS----AIAGLQSIKTLDLTSTQI-TDVTPL-------AGLSNLQVLYLDLNQ  140 (227)
T ss_dssp             -------GTTCCSCCEEECCSC-CCSCCG----GGTTCTTCCEEECTTSCC-CCCGGG-------TTCTTCCEEECCSSC
T ss_pred             -------ccccccccccccccc-cccccc----cccccccccccccccccc-cccchh-------ccccchhhhhchhhh
Confidence                   156788888888764 344442    145678888888877743 222211       245566666666443


Q ss_pred             ccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeeccccccCCCcCccccccceEEEeccCceee
Q 039042          287 IITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVFRCYDLKYI  366 (526)
Q Consensus       287 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~l~~~  366 (526)
                      +..   ..+...+++|++|++.+|....   .  ..++++++|+.|++++                        +.+..+
T Consensus       141 ~~~---~~~~~~~~~L~~L~l~~n~~~~---~--~~l~~l~~L~~L~Ls~------------------------n~l~~l  188 (227)
T d1h6ua2         141 ITN---ISPLAGLTNLQYLSIGNAQVSD---L--TPLANLSKLTTLKADD------------------------NKISDI  188 (227)
T ss_dssp             CCC---CGGGGGCTTCCEEECCSSCCCC---C--GGGTTCTTCCEEECCS------------------------SCCCCC
T ss_pred             hch---hhhhcccccccccccccccccc---c--hhhcccccceecccCC------------------------CccCCC
Confidence            321   1122344556666665543221   1  1234444444444442                        344443


Q ss_pred             ccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEcc
Q 039042          367 LKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISY  408 (526)
Q Consensus       367 ~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~  408 (526)
                      +  .+..+++|++|++++| .+..+++ +..+++|+.|++++
T Consensus       189 ~--~l~~l~~L~~L~Ls~N-~lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         189 S--PLASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             G--GGGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEE
T ss_pred             h--hhcCCCCCCEEECcCC-cCCCCcc-cccCCCCCEEEeeC
Confidence            2  2455677777777776 4555543 56677777777753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.25  E-value=1.7e-11  Score=108.27  Aligned_cols=162  Identities=16%  Similarity=0.182  Sum_probs=107.5

Q ss_pred             hhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecc
Q 039042          126 FLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDN  205 (526)
Q Consensus       126 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~  205 (526)
                      .++++++|++++++++.+-     + +..+++|++|++++| .++++.|     ++.+++|++|++++| .+..++.   
T Consensus        38 ~l~~l~~L~l~~~~i~~l~-----~-l~~l~nL~~L~Ls~N-~l~~~~~-----l~~l~~L~~L~l~~n-~~~~~~~---  101 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSID-----G-VEYLNNLTQINFSNN-QLTDITP-----LKNLTKLVDILMNNN-QIADITP---  101 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCT-----T-GGGCTTCCEEECCSS-CCCCCGG-----GTTCTTCCEEECCSS-CCCCCGG---
T ss_pred             HhcCCCEEECCCCCCCCcc-----c-cccCCCcCcCccccc-cccCccc-----ccCCccccccccccc-ccccccc---
Confidence            3778888888888777541     1 457888899998887 4555432     337888888888887 4444332   


Q ss_pred             hhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeec
Q 039042          206 QEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAE  285 (526)
Q Consensus       206 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  285 (526)
                              +..+++|++|+++++.. ..+. .   +..+++|+.|.+++| .+..++. +      ..+++|+.|++.+|
T Consensus       102 --------l~~l~~L~~L~l~~~~~-~~~~-~---~~~l~~L~~L~l~~n-~l~~~~~-l------~~~~~L~~L~l~~n  160 (199)
T d2omxa2         102 --------LANLTNLTGLTLFNNQI-TDID-P---LKNLTNLNRLELSSN-TISDISA-L------SGLTSLQQLNFSSN  160 (199)
T ss_dssp             --------GTTCTTCSEEECCSSCC-CCCG-G---GTTCTTCSEEECCSS-CCCCCGG-G------TTCTTCSEEECCSS
T ss_pred             --------ccccccccccccccccc-cccc-c---cchhhhhHHhhhhhh-hhccccc-c------cccccccccccccc
Confidence                    15788888888887543 2221 1   447888888888887 4554432 2      36788888888877


Q ss_pred             cccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEE
Q 039042          286 YIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVL  332 (526)
Q Consensus       286 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L  332 (526)
                      .+.+ +.  +...+++|++|++++|. ++  .++  .+.++++|++|
T Consensus       161 ~l~~-l~--~l~~l~~L~~L~ls~N~-i~--~i~--~l~~L~~L~~L  199 (199)
T d2omxa2         161 QVTD-LK--PLANLTTLERLDISSNK-VS--DIS--VLAKLTNLESL  199 (199)
T ss_dssp             CCCC-CG--GGTTCTTCCEEECCSSC-CC--CCG--GGGGCTTCSEE
T ss_pred             cccC-Cc--cccCCCCCCEEECCCCC-CC--CCc--cccCCCCCCcC
Confidence            6632 21  24567788888888874 55  333  46677777765

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3.9e-11  Score=109.45  Aligned_cols=85  Identities=22%  Similarity=0.269  Sum_probs=43.0

Q ss_pred             CcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccc
Q 039042          156 QNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFC  235 (526)
Q Consensus       156 ~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~  235 (526)
                      +++++|+++++ .++.+++..+.   ++++|++|++++|.....++....         ..+++++++.+..+..+...+
T Consensus        29 ~~l~~L~Ls~n-~i~~l~~~~f~---~l~~L~~L~ls~n~~~~~i~~~~f---------~~l~~l~~l~~~~~n~l~~~~   95 (242)
T d1xwdc1          29 RNAIELRFVLT-KLRVIQKGAFS---GFGDLEKIEISQNDVLEVIEADVF---------SNLPKLHEIRIEKANNLLYIN   95 (242)
T ss_dssp             SCCSEEEEESC-CCCEECTTTTT---TCTTCCEEEEESCTTCCEECSSSE---------ESCTTCCEEEEECCTTCCEEC
T ss_pred             CCCCEEECcCC-cCCccChhHhh---ccchhhhhhhccccccceeecccc---------ccccccccccccccccccccc
Confidence            45666666664 34444332333   566666666666643333322110         245556666655544444444


Q ss_pred             cCcccccCCCCccEEEeccC
Q 039042          236 TGDVHMLEFPSLKELWISRC  255 (526)
Q Consensus       236 ~~~~~~~~l~~L~~L~l~~c  255 (526)
                      ...  +..+++|+++.++++
T Consensus        96 ~~~--~~~l~~L~~l~l~~~  113 (242)
T d1xwdc1          96 PEA--FQNLPNLQYLLISNT  113 (242)
T ss_dssp             TTS--EECCTTCCEEEEESC
T ss_pred             ccc--ccccccccccccchh
Confidence            332  445666666666655

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.22  E-value=2.8e-11  Score=109.24  Aligned_cols=143  Identities=17%  Similarity=0.207  Sum_probs=76.0

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      +++|+++++++|.++.+-     + +..+++|+.+.+++|.... . + .   +...+.++.+.+..+. +.....    
T Consensus        84 l~~l~~l~~~~n~~~~i~-----~-l~~l~~L~~l~l~~~~~~~-~-~-~---~~~~~~~~~l~~~~~~-~~~~~~----  146 (227)
T d1h6ua2          84 LTKITELELSGNPLKNVS-----A-IAGLQSIKTLDLTSTQITD-V-T-P---LAGLSNLQVLYLDLNQ-ITNISP----  146 (227)
T ss_dssp             CCSCCEEECCSCCCSCCG-----G-GTTCTTCCEEECTTSCCCC-C-G-G---GTTCTTCCEEECCSSC-CCCCGG----
T ss_pred             cccccccccccccccccc-----c-ccccccccccccccccccc-c-c-h---hccccchhhhhchhhh-hchhhh----
Confidence            566666666666554331     1 3356677777776654332 1 1 1   1245666666665552 222111    


Q ss_pred             hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY  286 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  286 (526)
                             +..+++|++|++.++ .+..+. .   +..+++|++|++++| +++.++. +      ..+++|++|++++|.
T Consensus       147 -------~~~~~~L~~L~l~~n-~~~~~~-~---l~~l~~L~~L~Ls~n-~l~~l~~-l------~~l~~L~~L~Ls~N~  206 (227)
T d1h6ua2         147 -------LAGLTNLQYLSIGNA-QVSDLT-P---LANLSKLTTLKADDN-KISDISP-L------ASLPNLIEVHLKNNQ  206 (227)
T ss_dssp             -------GGGCTTCCEEECCSS-CCCCCG-G---GTTCTTCCEEECCSS-CCCCCGG-G------GGCTTCCEEECTTSC
T ss_pred             -------hcccccccccccccc-ccccch-h---hcccccceecccCCC-ccCCChh-h------cCCCCCCEEECcCCc
Confidence                   134566777777654 233221 1   346677777777766 4555443 1      356677777777665


Q ss_pred             ccccceeccccccccccEEEeee
Q 039042          287 IITNKFIFSEDLLCKLKCLDVEF  309 (526)
Q Consensus       287 ~~~~~~~~~~~~~~~L~~L~l~~  309 (526)
                      +. ++.  +...+++|+.|++++
T Consensus       207 lt-~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         207 IS-DVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CC-BCG--GGTTCTTCCEEEEEE
T ss_pred             CC-CCc--ccccCCCCCEEEeeC
Confidence            52 111  334566777777653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.19  E-value=5.3e-11  Score=105.97  Aligned_cols=165  Identities=16%  Similarity=0.204  Sum_probs=105.2

Q ss_pred             hhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecc
Q 039042          126 FLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDN  205 (526)
Q Consensus       126 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~  205 (526)
                      .+.+|++|++++|.++.+.     + +..+++|++|++++| .++++.|     ++.+++|++|++++| .++.++.   
T Consensus        44 ~L~~L~~L~l~~~~i~~l~-----~-l~~l~~L~~L~L~~n-~i~~l~~-----~~~l~~L~~L~l~~n-~i~~l~~---  107 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ-----G-IQYLPNVTKLFLNGN-KLTDIKP-----LANLKNLGWLFLDEN-KVKDLSS---  107 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT-----T-GGGCTTCCEEECCSS-CCCCCGG-----GTTCTTCCEEECCSS-CCCCGGG---
T ss_pred             HhcCccEEECcCCCCCCch-----h-HhhCCCCCEEeCCCc-cccCccc-----cccCccccccccccc-ccccccc---
Confidence            3677888888888766541     1 447888888888886 3454422     236788888888887 4554432   


Q ss_pred             hhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeec
Q 039042          206 QEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAE  285 (526)
Q Consensus       206 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  285 (526)
                              +..+++|+.|+++++. ...++ .   +..+++++.+.++++ .+...+..       ..+++|+.++++++
T Consensus       108 --------l~~l~~L~~L~l~~~~-~~~~~-~---l~~l~~l~~l~~~~n-~l~~~~~~-------~~l~~L~~l~l~~n  166 (210)
T d1h6ta2         108 --------LKDLKKLKSLSLEHNG-ISDIN-G---LVHLPQLESLYLGNN-KITDITVL-------SRLTKLDTLSLEDN  166 (210)
T ss_dssp             --------GTTCTTCCEEECTTSC-CCCCG-G---GGGCTTCCEEECCSS-CCCCCGGG-------GGCTTCSEEECCSS
T ss_pred             --------cccccccccccccccc-ccccc-c---ccccccccccccccc-cccccccc-------cccccccccccccc
Confidence                    1567888888887753 33332 1   456788888888776 34433322       35778888888876


Q ss_pred             cccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe
Q 039042          286 YIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE  335 (526)
Q Consensus       286 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~  335 (526)
                      .+.. +  .+...+++|++|++++|. ++  .++  .+.++++|+.|+++
T Consensus       167 ~l~~-i--~~l~~l~~L~~L~Ls~N~-i~--~l~--~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         167 QISD-I--VPLAGLTKLQNLYLSKNH-IS--DLR--ALAGLKNLDVLELF  208 (210)
T ss_dssp             CCCC-C--GGGTTCTTCCEEECCSSC-CC--BCG--GGTTCTTCSEEEEE
T ss_pred             cccc-c--ccccCCCCCCEEECCCCC-CC--CCh--hhcCCCCCCEEEcc
Confidence            6532 1  134456778888887764 44  343  46677777777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.16  E-value=6.1e-11  Score=105.55  Aligned_cols=167  Identities=17%  Similarity=0.160  Sum_probs=93.8

Q ss_pred             ccCCcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccccccchhhhhhhhhhccccccccccccccccccc
Q 039042           73 VGSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMT  152 (526)
Q Consensus        73 ~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~  152 (526)
                      ..+.+|+.|++++|.....+.  +..                            +++|++|++++|.++.+.   +   +
T Consensus        43 ~~L~~L~~L~l~~~~i~~l~~--l~~----------------------------l~~L~~L~L~~n~i~~l~---~---~   86 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIKSVQG--IQY----------------------------LPNVTKLFLNGNKLTDIK---P---L   86 (210)
T ss_dssp             HHHHTCCEEECTTSCCCCCTT--GGG----------------------------CTTCCEEECCSSCCCCCG---G---G
T ss_pred             HHhcCccEEECcCCCCCCchh--Hhh----------------------------CCCCCEEeCCCccccCcc---c---c
Confidence            356788888888876443321  222                            566677777777665431   1   3


Q ss_pred             ccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCcccc
Q 039042          153 CGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLT  232 (526)
Q Consensus       153 ~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~  232 (526)
                      ..+++|++|++++| .++++ |.    +..+++|+.|++.+|. +..++.           +..+++++.++++++ .+.
T Consensus        87 ~~l~~L~~L~l~~n-~i~~l-~~----l~~l~~L~~L~l~~~~-~~~~~~-----------l~~l~~l~~l~~~~n-~l~  147 (210)
T d1h6ta2          87 ANLKNLGWLFLDEN-KVKDL-SS----LKDLKKLKSLSLEHNG-ISDING-----------LVHLPQLESLYLGNN-KIT  147 (210)
T ss_dssp             TTCTTCCEEECCSS-CCCCG-GG----GTTCTTCCEEECTTSC-CCCCGG-----------GGGCTTCCEEECCSS-CCC
T ss_pred             ccCccccccccccc-ccccc-cc----cccccccccccccccc-cccccc-----------ccccccccccccccc-ccc
Confidence            35677777777765 34443 32    2256777777776663 322211           145666777776653 333


Q ss_pred             ccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeee
Q 039042          233 SFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEF  309 (526)
Q Consensus       233 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  309 (526)
                      +.+.    ...+++|+++.++++ ++..++. +      ..+++|++|++++|.+. ++.  +...+++|++|++++
T Consensus       148 ~~~~----~~~l~~L~~l~l~~n-~l~~i~~-l------~~l~~L~~L~Ls~N~i~-~l~--~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         148 DITV----LSRLTKLDTLSLEDN-QISDIVP-L------AGLTKLQNLYLSKNHIS-DLR--ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCGG----GGGCTTCSEEECCSS-CCCCCGG-G------TTCTTCCEEECCSSCCC-BCG--GGTTCTTCSEEEEEE
T ss_pred             cccc----ccccccccccccccc-ccccccc-c------cCCCCCCEEECCCCCCC-CCh--hhcCCCCCCEEEccC
Confidence            3321    335677777777766 4454432 1      35677777777766552 222  134566777777753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.08  E-value=1.8e-10  Score=101.52  Aligned_cols=117  Identities=21%  Similarity=0.244  Sum_probs=79.6

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      +++|++|++++|.+..+-   +   +..+++|+.|++++|.... . + .   +..+++|+.|++++| .+..++.    
T Consensus        83 l~~L~~L~l~~n~~~~~~---~---l~~l~~L~~L~l~~~~~~~-~-~-~---~~~l~~L~~L~l~~n-~l~~~~~----  145 (199)
T d2omxa2          83 LTKLVDILMNNNQIADIT---P---LANLTNLTGLTLFNNQITD-I-D-P---LKNLTNLNRLELSSN-TISDISA----  145 (199)
T ss_dssp             CTTCCEEECCSSCCCCCG---G---GTTCTTCSEEECCSSCCCC-C-G-G---GTTCTTCSEEECCSS-CCCCCGG----
T ss_pred             Cccccccccccccccccc---c---ccccccccccccccccccc-c-c-c---cchhhhhHHhhhhhh-hhccccc----
Confidence            778888888888665441   1   4478888888888775443 2 2 2   236888888888887 4544432    


Q ss_pred             hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceE
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEEL  280 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L  280 (526)
                             +..+++|++|++.++ .+++++.    +..+++|++|++++| +++.++. +      ..+++|+.|
T Consensus       146 -------l~~~~~L~~L~l~~n-~l~~l~~----l~~l~~L~~L~ls~N-~i~~i~~-l------~~L~~L~~L  199 (199)
T d2omxa2         146 -------LSGLTSLQQLNFSSN-QVTDLKP----LANLTTLERLDISSN-KVSDISV-L------AKLTNLESL  199 (199)
T ss_dssp             -------GTTCTTCSEEECCSS-CCCCCGG----GTTCTTCCEEECCSS-CCCCCGG-G------GGCTTCSEE
T ss_pred             -------ccccccccccccccc-cccCCcc----ccCCCCCCEEECCCC-CCCCCcc-c------cCCCCCCcC
Confidence                   156888888888875 5566532    557889999999888 5766643 2      357777765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.5e-09  Score=91.72  Aligned_cols=108  Identities=12%  Similarity=0.098  Sum_probs=62.6

Q ss_pred             ccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCcccc
Q 039042          153 CGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLT  232 (526)
Q Consensus       153 ~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~  232 (526)
                      .++.++++|+|++|. ++.+ |....   .+++|+.|++++| .+..++. +          ..+++|++|+++++ .+.
T Consensus        15 ~n~~~lr~L~L~~n~-I~~i-~~~~~---~l~~L~~L~Ls~N-~i~~l~~-~----------~~l~~L~~L~ls~N-~i~   76 (162)
T d1a9na_          15 TNAVRDRELDLRGYK-IPVI-ENLGA---TLDQFDAIDFSDN-EIRKLDG-F----------PLLRRLKTLLVNNN-RIC   76 (162)
T ss_dssp             ECTTSCEEEECTTSC-CCSC-CCGGG---GTTCCSEEECCSS-CCCEECC-C----------CCCSSCCEEECCSS-CCC
T ss_pred             cCcCcCcEEECCCCC-CCcc-Ccccc---ccccCCEEECCCC-CCCccCC-c----------ccCcchhhhhcccc-ccc
Confidence            366778888888764 4444 43222   5778888888887 5666532 2          46777777777764 456


Q ss_pred             ccccCcccccCCCCccEEEeccCCCceeccc-cccCCccccccCCcceEEEeecc
Q 039042          233 SFCTGDVHMLEFPSLKELWISRCPEFMVRFK-RTTNDLTKKVFPNLEELIVDAEY  286 (526)
Q Consensus       233 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~  286 (526)
                      .++...  ...+++|++|++++| ++..++. ...     ..+++|++|++++|.
T Consensus        77 ~l~~~~--~~~l~~L~~L~L~~N-~i~~~~~l~~l-----~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          77 RIGEGL--DQALPDLTELILTNN-SLVELGDLDPL-----ASLKSLTYLCILRNP  123 (162)
T ss_dssp             EECSCH--HHHCTTCCEEECCSC-CCCCGGGGGGG-----GGCTTCCEEECCSSG
T ss_pred             CCCccc--cccccccccceeccc-ccccccccccc-----ccccccchhhcCCCc
Confidence            655441  345677777777766 3443322 111     234555555555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.78  E-value=6.9e-09  Score=83.23  Aligned_cols=101  Identities=18%  Similarity=0.183  Sum_probs=61.6

Q ss_pred             cEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccccCc
Q 039042          159 THLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGD  238 (526)
Q Consensus       159 ~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~  238 (526)
                      |.|++++++ ++.+ +.    ++.+++|++|++++| .+..+|..+          ..+++|++|++++ +.++.++ + 
T Consensus         1 R~L~Ls~n~-l~~l-~~----l~~l~~L~~L~ls~N-~l~~lp~~~----------~~l~~L~~L~l~~-N~i~~l~-~-   60 (124)
T d1dcea3           1 RVLHLAHKD-LTVL-CH----LEQLLLVTHLDLSHN-RLRALPPAL----------AALRCLEVLQASD-NALENVD-G-   60 (124)
T ss_dssp             SEEECTTSC-CSSC-CC----GGGGTTCCEEECCSS-CCCCCCGGG----------GGCTTCCEEECCS-SCCCCCG-G-
T ss_pred             CEEEcCCCC-CCCC-cc----cccCCCCCEEECCCC-ccCcchhhh----------hhhhccccccccc-ccccccC-c-
Confidence            567788764 4443 32    337788888888887 566665443          5677788888876 3566653 2 


Q ss_pred             ccccCCCCccEEEeccCCCceecccc-ccCCccccccCCcceEEEeeccc
Q 039042          239 VHMLEFPSLKELWISRCPEFMVRFKR-TTNDLTKKVFPNLEELIVDAEYI  287 (526)
Q Consensus       239 ~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~  287 (526)
                        +..+++|++|+++++ .+..++.. .+     ..+++|+.|++++|.+
T Consensus        61 --~~~l~~L~~L~l~~N-~i~~~~~~~~l-----~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          61 --VANLPRLQELLLCNN-RLQQSAAIQPL-----VSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             --GTTCSSCCEEECCSS-CCCSSSTTGGG-----GGCTTCCEEECTTSGG
T ss_pred             --cccccccCeEECCCC-ccCCCCCchhh-----cCCCCCCEEECCCCcC
Confidence              556777777777776 44444321 11     2455666666655443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.76  E-value=7e-09  Score=83.21  Aligned_cols=101  Identities=20%  Similarity=0.230  Sum_probs=77.6

Q ss_pred             hhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhc
Q 039042          131 EKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEER  210 (526)
Q Consensus       131 ~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~  210 (526)
                      |+|++++|+++.+.     + +..+++|++|++++| .++.+ |..++   .+++|++|++++| .++.++.        
T Consensus         1 R~L~Ls~n~l~~l~-----~-l~~l~~L~~L~ls~N-~l~~l-p~~~~---~l~~L~~L~l~~N-~i~~l~~--------   60 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-----H-LEQLLLVTHLDLSHN-RLRAL-PPALA---ALRCLEVLQASDN-ALENVDG--------   60 (124)
T ss_dssp             SEEECTTSCCSSCC-----C-GGGGTTCCEEECCSS-CCCCC-CGGGG---GCTTCCEEECCSS-CCCCCGG--------
T ss_pred             CEEEcCCCCCCCCc-----c-cccCCCCCEEECCCC-ccCcc-hhhhh---hhhcccccccccc-cccccCc--------
Confidence            57899999888652     1 458999999999986 46665 55554   7999999999998 6766642        


Q ss_pred             ccccccccccceeecccCccccccccCcccccCCCCccEEEeccCC
Q 039042          211 KNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCP  256 (526)
Q Consensus       211 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~  256 (526)
                         +..+++|++|+++++ .+..++.. ..+..+++|+.|++++++
T Consensus        61 ---~~~l~~L~~L~l~~N-~i~~~~~~-~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          61 ---VANLPRLQELLLCNN-RLQQSAAI-QPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             ---GTTCSSCCEEECCSS-CCCSSSTT-GGGGGCTTCCEEECTTSG
T ss_pred             ---cccccccCeEECCCC-ccCCCCCc-hhhcCCCCCCEEECCCCc
Confidence               268999999999974 67776543 236789999999999873

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=5.5e-09  Score=88.19  Aligned_cols=129  Identities=16%  Similarity=0.133  Sum_probs=91.1

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ  206 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  206 (526)
                      ..+|+.|+|++|+++.+..  .   +..+++|++|++++|. ++.+ +.    ++.+++|++|++++| .+..++.... 
T Consensus        17 ~~~lr~L~L~~n~I~~i~~--~---~~~l~~L~~L~Ls~N~-i~~l-~~----~~~l~~L~~L~ls~N-~i~~l~~~~~-   83 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVIEN--L---GATLDQFDAIDFSDNE-IRKL-DG----FPLLRRLKTLLVNNN-RICRIGEGLD-   83 (162)
T ss_dssp             TTSCEEEECTTSCCCSCCC--G---GGGTTCCSEEECCSSC-CCEE-CC----CCCCSSCCEEECCSS-CCCEECSCHH-
T ss_pred             cCcCcEEECCCCCCCccCc--c---ccccccCCEEECCCCC-CCcc-CC----cccCcchhhhhcccc-cccCCCcccc-
Confidence            6689999999998887732  1   3478999999999974 5655 32    348999999999999 6777765431 


Q ss_pred             hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEE
Q 039042          207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELI  281 (526)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~  281 (526)
                              ..+++|++|+++++ .+..++.. ..+..+++|++|.+++|+ +...+...  ......+|+|+.|+
T Consensus        84 --------~~l~~L~~L~L~~N-~i~~~~~l-~~l~~l~~L~~L~l~~N~-i~~~~~~r--~~~i~~lp~L~~LD  145 (162)
T d1a9na_          84 --------QALPDLTELILTNN-SLVELGDL-DPLASLKSLTYLCILRNP-VTNKKHYR--LYVIYKVPQVRVLD  145 (162)
T ss_dssp             --------HHCTTCCEEECCSC-CCCCGGGG-GGGGGCTTCCEEECCSSG-GGGSTTHH--HHHHHHCTTCSEET
T ss_pred             --------ccccccccceeccc-cccccccc-cccccccccchhhcCCCc-cccccchH--HHHHHHCCCcCeeC
Confidence                    46899999999985 56666542 236789999999999994 44333100  00003466676665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.72  E-value=1.3e-08  Score=88.61  Aligned_cols=108  Identities=14%  Similarity=0.072  Sum_probs=53.8

Q ss_pred             CcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccc
Q 039042          156 QNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFC  235 (526)
Q Consensus       156 ~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~  235 (526)
                      +++++|+|+++.....+.+..+.   .+++|++|++++| .+..++...         ...+++|++|+++++ .+..++
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~---~l~~L~~L~L~~N-~i~~~~~~~---------~~~~~~L~~L~Ls~N-~l~~l~   94 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFG---RLPHLVKLELKRN-QLTGIEPNA---------FEGASHIQELQLGEN-KIKEIS   94 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGG---GCTTCCEEECCSS-CCCCBCTTT---------TTTCTTCCEEECCSC-CCCEEC
T ss_pred             CCCCEEEeCCCCCcccccccccC---CCceEeeeecccc-ccccccccc---------cccccccceeeeccc-cccccC
Confidence            45666666665322212122222   5666666666665 333332221         134556666666653 455554


Q ss_pred             cCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeec
Q 039042          236 TGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAE  285 (526)
Q Consensus       236 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  285 (526)
                      ...  +.++++|++|+++++ +++.+++..+.     .+++|++|+++++
T Consensus        95 ~~~--F~~l~~L~~L~L~~N-~l~~i~~~~f~-----~l~~L~~l~L~~N  136 (192)
T d1w8aa_          95 NKM--FLGLHQLKTLNLYDN-QISCVMPGSFE-----HLNSLTSLNLASN  136 (192)
T ss_dssp             SSS--STTCTTCCEEECCSS-CCCEECTTSST-----TCTTCCEEECTTC
T ss_pred             HHH--HhCCCcccccccCCc-cccccCHHHhc-----CCccccccccccc
Confidence            442  455666666666665 45555554332     4555555555543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.61  E-value=6.5e-08  Score=84.08  Aligned_cols=113  Identities=17%  Similarity=0.141  Sum_probs=72.0

Q ss_pred             eccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCceeecccc
Q 039042          293 IFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQE  370 (526)
Q Consensus       293 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~  370 (526)
                      .+|.+.++++++|+++++..-.  ..+...+..+++|+.|++..+ ...++...+  ..+++|++|+++ +.+..+++..
T Consensus        22 ~iP~~lp~~l~~L~Ls~N~i~~--~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~--~~~~~L~~L~Ls~N~l~~l~~~~   97 (192)
T d1w8aa_          22 EIPRDIPLHTTELLLNDNELGR--ISSDGLFGRLPHLVKLELKRNQLTGIEPNAF--EGASHIQELQLGENKIKEISNKM   97 (192)
T ss_dssp             SCCSCCCTTCSEEECCSCCCCS--BCCSCSGGGCTTCCEEECCSSCCCCBCTTTT--TTCTTCCEEECCSCCCCEECSSS
T ss_pred             ccCCCCCCCCCEEEeCCCCCcc--cccccccCCCceEeeeecccccccccccccc--ccccccceeeeccccccccCHHH
Confidence            3454444566666666654322  334445666777777777633 333333333  456778888888 7888887778


Q ss_pred             ccccCcccEEEEeccCCcccccC-CCccCCCcCEEEEccCC
Q 039042          371 SSIMNNLVILHVTNCHRLINLVP-SSTSFQNLTSLEISYCN  410 (526)
Q Consensus       371 ~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~  410 (526)
                      |..+++|++|+++++ .+..+++ .+..+++|++|++++.+
T Consensus        98 F~~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          98 FLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             STTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             HhCCCcccccccCCc-cccccCHHHhcCCcccccccccccc
Confidence            888888888888876 3555544 34567778888887653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=5.3e-10  Score=111.49  Aligned_cols=115  Identities=16%  Similarity=0.055  Sum_probs=51.2

Q ss_pred             cccEEEEecCCCCCC-chhhhhhccCccc--ccccccchhhhcccccccchhhhhhhhhhcccccccccc-ccccccccc
Q 039042           77 QLKFLGIHGCRDALN-PSAESKRQRQEES--ANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERI-WRNQVAAMT  152 (526)
Q Consensus        77 ~L~~L~L~~c~~~~~-p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~-~~~~~~~~~  152 (526)
                      +|+.|+++++..... -...+..++++++  +.+|. +...... .........++|+.|+|++|.+++. +........
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~-~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCK-DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHH-HHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHH-HHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            567777765543332 1233445555555  55442 1111000 0001112356777777777766531 000010000


Q ss_pred             ccCCcccEEEeccCCCceecCCccccc-ccccccccEEeeecc
Q 039042          153 CGIQNLTHLTLYNCMNLRCLFSSCTVS-NNSFVRLQYIRIEKC  194 (526)
Q Consensus       153 ~~l~~L~~L~L~~c~~l~~l~p~~l~~-l~~l~~L~~L~l~~~  194 (526)
                      ....+|++|++++|. +++..-..+++ +..+++|++|++++|
T Consensus        81 ~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             STTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred             cCCCCCCEEECCCCC-ccccccccccchhhccccccccccccc
Confidence            123467777777764 33210001110 225677777777776

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=2.2e-09  Score=106.93  Aligned_cols=317  Identities=15%  Similarity=0.085  Sum_probs=152.9

Q ss_pred             hhhhhhhcccccccccccccc-cccccccCCcccEEEeccCCCceecCCcccccccccc----cccEEeeeccccccEEE
Q 039042          127 LEKLEKLELRSINIERIWRNQ-VAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFV----RLQYIRIEKCHVLEELI  201 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~-~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~----~L~~L~l~~~~~l~~l~  201 (526)
                      ..+|++|++++|.+++..... +.. +..+++|++|++++|. +.......+..  .+.    .......... ....  
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~-l~~~~~L~~L~L~~N~-i~~~~~~~l~~--~l~~~~~~~~~~~~~~~-~~~~--  155 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELHLSDNL-LGDAGLQLLCE--GLLDPQCRLEKLQLEYC-SLSA--  155 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHH-TTSCTTCCEEECCSSB-CHHHHHHHHHH--HHTSTTCCCCEEECTTS-CCBG--
T ss_pred             CCCCCEEECCCCCccccccccccch-hhcccccccccccccc-chhhhhhhhhh--ccccccccccccccccc-ccch--
Confidence            357999999999876542211 122 4578899999999875 32211111110  111    1111111111 0000  


Q ss_pred             eecchhhhcccccccccccceeecccCccccc----cccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCc
Q 039042          202 VVDNQEEERKNNIVMFPQLQYLKMYDLEKLTS----FCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNL  277 (526)
Q Consensus       202 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~----~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L  277 (526)
                         .........+...+.++.+.++++.....    ....  ....-.....+.+..+.....-.....  ......+.+
T Consensus       156 ---~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~--l~~~~~~~~~l~~~~~~~~~~~~~~~~--~~l~~~~~~  228 (460)
T d1z7xw1         156 ---ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQG--LKDSPCQLEALKLESCGVTSDNCRDLC--GIVASKASL  228 (460)
T ss_dssp             ---GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH--HHHSCCCCCEEECTTSCCBTTHHHHHH--HHHHHCTTC
T ss_pred             ---hhhcccccccccccccccccccccccccccccccccc--cccccccccccccccccccchhhhccc--ccccccccc
Confidence               00000001113345666666665432111    0000  011223455666665522111000000  000245677


Q ss_pred             ceEEEeecccccc-ceec---cccccccccEEEeeeCCccccc-ccchhHhhcCCCccEEEEee-ccc-----cccCCCc
Q 039042          278 EELIVDAEYIITN-KFIF---SEDLLCKLKCLDVEFVDELTTI-LSLDDFLQRFPTLKVLQIEG-YSD-----WLPKEKV  346 (526)
Q Consensus       278 ~~L~l~~~~~~~~-~~~~---~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~l~~L~~L~l~~-~~~-----~~~~~~~  346 (526)
                      +.+++..+.+... ....   .......++.+++++|...... ......+...+.++.+++.+ ...     .+.. .+
T Consensus       229 ~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~-~l  307 (460)
T d1z7xw1         229 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE-TL  307 (460)
T ss_dssp             CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH-HH
T ss_pred             cccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhc-cc
Confidence            7887775543211 0000   1123567888888876543300 00112345677888888873 211     1110 00


Q ss_pred             CccccccceEEEec-cCceeeccc----cccccCcccEEEEeccCCcc----cccCCC-ccCCCcCEEEEccCCCccccc
Q 039042          347 ENGMEVIIRRVFRC-YDLKYILKQ----ESSIMNNLVILHVTNCHRLI----NLVPSS-TSFQNLTSLEISYCNGLKNVL  416 (526)
Q Consensus       347 ~~~~~~~L~~L~l~-~~l~~~~~~----~~~~l~~L~~L~l~~c~~l~----~l~~~~-~~~~~L~~L~l~~c~~l~~~~  416 (526)
                       ....+.|+.+.+. ..+......    .+...++|++|+++++..-.    .+...+ ...+.|++|++++| ++++..
T Consensus       308 -~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~  385 (460)
T d1z7xw1         308 -LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSS  385 (460)
T ss_dssp             -TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHH
T ss_pred             -cccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCC-CCChHH
Confidence             0233578888887 554433222    22345689999999885321    122222 23567999999999 676532


Q ss_pred             ch---HHHhhcccccEEEEccccccce-----ecccccCCcccccCCCeeeeCccCeEecCCCc
Q 039042          417 TF---SIAKTLVRLREMKIESCAMITE-----IVLADDDDDHDAAKDEVIAFSELNELKLLNLK  472 (526)
Q Consensus       417 ~~---~~~~~l~~L~~L~i~~c~~l~~-----~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  472 (526)
                      ..   ..+..+++|++|+++++ .+.+     +.....           .....|+.|++.++.
T Consensus       386 ~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~-----------~~~~~L~~l~l~~~~  437 (460)
T d1z7xw1         386 CSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVR-----------QPGCLLEQLVLYDIY  437 (460)
T ss_dssp             HHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHT-----------STTCCCCEEECTTCC
T ss_pred             HHHHHHHHhcCCCCCEEECCCC-cCCHHHHHHHHHHHH-----------hCCCccCEEECCCCC
Confidence            22   24556799999999985 3432     111111           022479999998864

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.32  E-value=7.9e-09  Score=90.39  Aligned_cols=82  Identities=17%  Similarity=0.294  Sum_probs=39.0

Q ss_pred             cccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccc
Q 039042          152 TCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKL  231 (526)
Q Consensus       152 ~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l  231 (526)
                      +..+++|++|++++| .++.+ + .   ++.+++|++|++++| .+..++...          ..+++|++|+++++ .+
T Consensus        44 l~~L~~L~~L~Ls~n-~I~~i-~-~---l~~l~~L~~L~Ls~N-~i~~i~~~~----------~~~~~L~~L~l~~N-~i  105 (198)
T d1m9la_          44 LSTLKACKHLALSTN-NIEKI-S-S---LSGMENLRILSLGRN-LIKKIENLD----------AVADTLEELWISYN-QI  105 (198)
T ss_dssp             HHHTTTCCEEECSEE-EESCC-C-C---HHHHTTCCEEECCEE-EECSCSSHH----------HHHHHCCEEECSEE-EC
T ss_pred             HhcccccceeECccc-CCCCc-c-c---ccCCccccChhhccc-ccccccccc----------cccccccccccccc-cc
Confidence            445666666666654 23433 2 1   225666666666665 343332211          22345566666543 34


Q ss_pred             cccccCcccccCCCCccEEEeccC
Q 039042          232 TSFCTGDVHMLEFPSLKELWISRC  255 (526)
Q Consensus       232 ~~~~~~~~~~~~l~~L~~L~l~~c  255 (526)
                      +.++ .   +..+++|++|++++|
T Consensus       106 ~~l~-~---~~~l~~L~~L~L~~N  125 (198)
T d1m9la_         106 ASLS-G---IEKLVNLRVLYMSNN  125 (198)
T ss_dssp             CCHH-H---HHHHHHSSEEEESEE
T ss_pred             cccc-c---ccccccccccccccc
Confidence            4332 1   334555555555554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.30  E-value=9.8e-09  Score=89.76  Aligned_cols=107  Identities=22%  Similarity=0.261  Sum_probs=76.9

Q ss_pred             hhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeec
Q 039042          125 LFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVD  204 (526)
Q Consensus       125 ~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~  204 (526)
                      ..+++|++|++++|.++.+-   +   +..+++|++|++++|. ++.+ |....   .+++|++|++++| .+..++.  
T Consensus        45 ~~L~~L~~L~Ls~n~I~~i~---~---l~~l~~L~~L~Ls~N~-i~~i-~~~~~---~~~~L~~L~l~~N-~i~~l~~--  110 (198)
T d1m9la_          45 STLKACKHLALSTNNIEKIS---S---LSGMENLRILSLGRNL-IKKI-ENLDA---VADTLEELWISYN-QIASLSG--  110 (198)
T ss_dssp             HHTTTCCEEECSEEEESCCC---C---HHHHTTCCEEECCEEE-ECSC-SSHHH---HHHHCCEEECSEE-ECCCHHH--
T ss_pred             hcccccceeECcccCCCCcc---c---ccCCccccChhhcccc-cccc-ccccc---ccccccccccccc-ccccccc--
Confidence            34888999999999887651   1   5578999999999874 5554 43222   4678999999998 6665432  


Q ss_pred             chhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCC
Q 039042          205 NQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCP  256 (526)
Q Consensus       205 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~  256 (526)
                               +..+++|++|+++++ .++.++.. ..+..+++|+.|.+++++
T Consensus       111 ---------~~~l~~L~~L~L~~N-~i~~~~~~-~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         111 ---------IEKLVNLRVLYMSNN-KITNWGEI-DKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             ---------HHHHHHSSEEEESEE-ECCCHHHH-HHHTTTTTCSEEEECSSH
T ss_pred             ---------ccccccccccccccc-hhcccccc-ccccCCCccceeecCCCc
Confidence                     156889999999874 56665431 126688999999999884

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.7e-06  Score=71.95  Aligned_cols=107  Identities=17%  Similarity=0.032  Sum_probs=65.2

Q ss_pred             CCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCcccccc
Q 039042          155 IQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSF  234 (526)
Q Consensus       155 l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~  234 (526)
                      +.....++..+... .+ .|..+.   .+++|++|++.++..++.++...+         ..+++|++|+++++ .++.+
T Consensus         7 c~~~~~l~c~~~~~-~~-~p~~l~---~l~~l~~L~l~~n~~l~~i~~~~f---------~~l~~L~~L~Ls~N-~l~~i   71 (156)
T d2ifga3           7 PHGSSGLRCTRDGA-LD-SLHHLP---GAENLTELYIENQQHLQHLELRDL---------RGLGELRNLTIVKS-GLRFV   71 (156)
T ss_dssp             CSSSSCEECCSSCC-CT-TTTTSC---SCSCCSEEECCSCSSCCEECGGGS---------CSCCCCSEEECCSS-CCCEE
T ss_pred             cCCCCeEEecCCCC-cc-Cccccc---CccccCeeecCCCccccccCchhh---------ccccccCcceeecc-ccCCc
Confidence            44445566655432 22 244444   577777777776656777654321         45777777777763 56666


Q ss_pred             ccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeec
Q 039042          235 CTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAE  285 (526)
Q Consensus       235 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  285 (526)
                      +...  +..+++|++|+++++ +++.++...+.      ..+|++|++++|
T Consensus        72 ~~~~--f~~l~~L~~L~Ls~N-~l~~l~~~~~~------~~~l~~L~L~~N  113 (156)
T d2ifga3          72 APDA--FHFTPRLSRLNLSFN-ALESLSWKTVQ------GLSLQELVLSGN  113 (156)
T ss_dssp             CTTG--GGSCSCCCEEECCSS-CCSCCCSTTTC------SCCCCEEECCSS
T ss_pred             cccc--ccccccccceeccCC-CCcccChhhhc------cccccccccCCC
Confidence            5443  567777788888777 56666665432      335777777654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1.5e-06  Score=72.19  Aligned_cols=104  Identities=23%  Similarity=0.129  Sum_probs=75.3

Q ss_pred             hhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhc
Q 039042          131 EKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEER  210 (526)
Q Consensus       131 ~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~  210 (526)
                      +.++.+++++...    |.. +..+++|++|++.+++.++.+.+..+.   ++++|+.|++++| .+..++...+     
T Consensus        11 ~~l~c~~~~~~~~----p~~-l~~l~~l~~L~l~~n~~l~~i~~~~f~---~l~~L~~L~Ls~N-~l~~i~~~~f-----   76 (156)
T d2ifga3          11 SGLRCTRDGALDS----LHH-LPGAENLTELYIENQQHLQHLELRDLR---GLGELRNLTIVKS-GLRFVAPDAF-----   76 (156)
T ss_dssp             SCEECCSSCCCTT----TTT-SCSCSCCSEEECCSCSSCCEECGGGSC---SCCCCSEEECCSS-CCCEECTTGG-----
T ss_pred             CeEEecCCCCccC----ccc-ccCccccCeeecCCCccccccCchhhc---cccccCcceeecc-ccCCcccccc-----
Confidence            3455555555544    222 447889999999887778877555554   7999999999998 7787755422     


Q ss_pred             ccccccccccceeecccCccccccccCcccccCCCCccEEEeccCC
Q 039042          211 KNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCP  256 (526)
Q Consensus       211 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~  256 (526)
                          ..+++|++|++++ +.++.++..   .....+|+.|++++++
T Consensus        77 ----~~l~~L~~L~Ls~-N~l~~l~~~---~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          77 ----HFTPRLSRLNLSF-NALESLSWK---TVQGLSLQELVLSGNP  114 (156)
T ss_dssp             ----GSCSCCCEEECCS-SCCSCCCST---TTCSCCCCEEECCSSC
T ss_pred             ----cccccccceeccC-CCCcccChh---hhccccccccccCCCc
Confidence                5688999999987 478888776   4455679999998873

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.02  E-value=4.8e-07  Score=86.19  Aligned_cols=107  Identities=15%  Similarity=0.054  Sum_probs=52.0

Q ss_pred             HHHhccccccceecccccccccccc-ccc--ccccCCcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccc
Q 039042           43 LILQLQGIEDLELHELQEQDVNYFA-NEL--VRVGSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNA  119 (526)
Q Consensus        43 ~~~~l~~~~~L~~l~l~~~~~~~~~-~~~--~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~  119 (526)
                      +...++....++.++++++.+.... ..+  .....++|+.|++++|............            ...+.    
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~------------~~~l~----   86 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA------------LRLLL----   86 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHH------------HHHHH----
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchH------------HHHHH----
Confidence            3445666677777777765543311 111  1234678888888877543331100000            00010    


Q ss_pred             cccchhhhhhhhhhcccccccccccccccccccccCCcccEEEeccCC
Q 039042          120 NISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCM  167 (526)
Q Consensus       120 ~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~  167 (526)
                        ......++|+.|+|++|.+...........+...++|+.|++++|.
T Consensus        87 --~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~  132 (344)
T d2ca6a1          87 --QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  132 (344)
T ss_dssp             --HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             --HHHhhCCCcccccccccccccccccchhhhhcccccchheeccccc
Confidence              0111255677777777755432111111113356777777777764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.93  E-value=1.1e-06  Score=83.73  Aligned_cols=62  Identities=15%  Similarity=0.211  Sum_probs=36.4

Q ss_pred             EEEecceeehh---HHHHHhccccccceeccccccccccccccc---------ccccCCcccEEEEecCCCCCC
Q 039042           30 RLRLNNKICLK---DWLILQLQGIEDLELHELQEQDVNYFANEL---------VRVGSSQLKFLGIHGCRDALN   91 (526)
Q Consensus        30 ~l~l~~~~~~~---~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~---------~~~~l~~L~~L~L~~c~~~~~   91 (526)
                      .|++....--+   ..+...+...++|+.+++.+..........         .....++|++|++++|.....
T Consensus        35 ~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  108 (344)
T d2ca6a1          35 EIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  108 (344)
T ss_dssp             EEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             EEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccc
Confidence            45555432222   245556777888888888754333222110         123468999999999975544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.0011  Score=54.58  Aligned_cols=63  Identities=16%  Similarity=0.116  Sum_probs=33.0

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccc
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCH  195 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~  195 (526)
                      +++|++|++++|.++.+..- +.. +..+++|+.|++++| .++++ +. +..+ ...+|++|++.+|+
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~-~~~-~~~l~~L~~L~Ls~N-~i~~l-~~-l~~l-~~~~L~~L~L~~Np  126 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDM-SSI-VQKAPNLKILNLSGN-ELKSE-RE-LDKI-KGLKLEELWLDGNS  126 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGG-GTH-HHHSTTCCCCCCTTS-CCCCG-GG-HHHH-TTCCCSSCCCTTST
T ss_pred             CCCCCEeeCCCccccCCchh-HHH-HhhCCcccccccccC-ccccc-hh-hhhh-hccccceeecCCCC
Confidence            66777777777766644110 111 335677777777765 34433 21 1101 23356666666663

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.62  E-value=0.0098  Score=48.55  Aligned_cols=64  Identities=16%  Similarity=-0.038  Sum_probs=37.8

Q ss_pred             ccCCcccEEEEecCCCCCCc--hhhhhhccCcccccccccchhhhcccccccchhhhhhhhhhccccccccccccccccc
Q 039042           73 VGSSQLKFLGIHGCRDALNP--SAESKRQRQEESANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAA  150 (526)
Q Consensus        73 ~~l~~L~~L~L~~c~~~~~p--~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~  150 (526)
                      ..+++|++|+|++|.....+  ...+.                            .+++|+.|++++|.++.+-...+  
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~----------------------------~l~~L~~L~Ls~N~i~~l~~l~~--  111 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQ----------------------------KAPNLKILNLSGNELKSERELDK--  111 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHH----------------------------HSTTCCCCCCTTSCCCCGGGHHH--
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHh----------------------------hCCcccccccccCccccchhhhh--
Confidence            35788999999988765542  11122                            26677777777776664421111  


Q ss_pred             ccccCCcccEEEeccCCC
Q 039042          151 MTCGIQNLTHLTLYNCMN  168 (526)
Q Consensus       151 ~~~~l~~L~~L~L~~c~~  168 (526)
                        ....+|+.|++.+|+.
T Consensus       112 --l~~~~L~~L~L~~Npl  127 (162)
T d1koha1         112 --IKGLKLEELWLDGNSL  127 (162)
T ss_dssp             --HTTCCCSSCCCTTSTT
T ss_pred             --hhccccceeecCCCCc
Confidence              1334577777777653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.55  E-value=0.019  Score=47.01  Aligned_cols=12  Identities=25%  Similarity=0.365  Sum_probs=6.6

Q ss_pred             CCcccEEEEecC
Q 039042           75 SSQLKFLGIHGC   86 (526)
Q Consensus        75 l~~L~~L~L~~c   86 (526)
                      .++|++|+|+++
T Consensus        14 ~~~L~~L~L~~~   25 (167)
T d1pgva_          14 DTDLKEVNINNM   25 (167)
T ss_dssp             CSSCCEEECTTC
T ss_pred             CCCCcEEEeCCC
Confidence            355666666544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=89.20  E-value=0.032  Score=45.49  Aligned_cols=41  Identities=12%  Similarity=0.015  Sum_probs=17.3

Q ss_pred             hhhhhhhcccccccccccccccccccccCCcccEEEeccCC
Q 039042          127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCM  167 (526)
Q Consensus       127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~  167 (526)
                      .++|++|++++|.+.+.........+...++++.+++++|.
T Consensus        45 n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~   85 (166)
T d1io0a_          45 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF   85 (166)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             CCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccc
Confidence            44555556665544322111000102334555555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.48  E-value=0.076  Score=43.17  Aligned_cols=113  Identities=14%  Similarity=0.132  Sum_probs=64.1

Q ss_pred             cCcccEEEEeccCCccc-----ccCCCccCCCcCEEEEccCCCcccccc---hHHHhhcccccEEEEcccccccee-ccc
Q 039042          374 MNNLVILHVTNCHRLIN-----LVPSSTSFQNLTSLEISYCNGLKNVLT---FSIAKTLVRLREMKIESCAMITEI-VLA  444 (526)
Q Consensus       374 l~~L~~L~l~~c~~l~~-----l~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~i~~c~~l~~~-~~~  444 (526)
                      .+.|++|+++++..+..     +...+...++|++|++++| .+.+-..   ...+...+.|++|++++|. +..- ...
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~~g~~~   91 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF-LTPELLAR   91 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehhh-cchHHHHH
Confidence            47899999987655431     2223445678999999887 4554221   1244556789999998874 3321 110


Q ss_pred             ccCCcccccCCCeeeeCccCeEecCCCccccccCC------CCccccCCCccEEeEecC
Q 039042          445 DDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYS------GNRALNFPSLERLLVDDC  497 (526)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~------~~~~~~~~~L~~L~l~~C  497 (526)
                      ..        .++..-++|++|++.++. ...+..      ...+...++|++|.++..
T Consensus        92 l~--------~aL~~n~sL~~L~l~~n~-~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          92 LL--------RSTLVTQSIVEFKADNQR-QSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HH--------HHTTTTCCCSEEECCCCS-SCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HH--------HHHHhCCcCCEEECCCCc-CCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            00        112234778899887642 222211      112334577888877653