Citrus Sinensis ID: 039052

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
MKQTKMWSSLLSFHGTCVLLLLTLVSMNDGFGVEAVKDFKVGDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKNDSVLEVDKWGYYHCNSSNATVAFNNGKSVFKLDRPGPFYFISGTPDHCKNGQRLLVEVMGLHPISQSPPAIAVPPDSYLAPGPLPSSGSLVSVTLLHSVLMSLVIVTIT
cccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccccccccccccHHHHcccEEEEcccEEEEEEcccEEEEcHHccccccccccccccccccEEEEccccccEEEEEccccccccccEEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHc
cHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccEEccccccccHHHHHHcccEEEccEEEEEEccccEEEEcHHHHHHcccccccEEccccccEEEEcccccEEEEEccccccccccEEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHc
MKQTKMWSSLLSFHGTCVLLLLTLVSMndgfgveavkdfkvgdgfgwqepghnntamysqwatrnrfhvgdslsfeykndsvlevdkwgyyhcnssnatvafnngksvfkldrpgpfyfisgtpdhcknGQRLLVEVmglhpisqsppaiavppdsylapgplpssgslvSVTLLHSVLMSLVIVTIT
MKQTKMWSSLLSFHGTCVLLLLTLVSMNDGFGVEAVKDFKVGDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKNDSVLEVDKWGYYHCNSSNATVAFNNGKSVFKLDRPGPFYFISGTPDHCKNGQRLLVEVMGLHPISQSPPAIAVPPDSYLAPGPLPSSGSLVSVTLLHSVLMSLVIVTIT
MKQTKMWSSLLSFHGTCVLLLLTLVSMNDGFGVEAVKDFKVGDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKNDSVLEVDKWGYYHCNSSNATVAFNNGKSVFKLDRPGPFYFISGTPDHCKNGQRLLVEVMGLHPISQSPPAIAVPPDSYLAPGPlpssgslvsvtllhsvlmslvIVTIT
******WSSLLSFHGTCVLLLLTLVSMNDGFGVEAVKDFKVGDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKNDSVLEVDKWGYYHCNSSNATVAFNNGKSVFKLDRPGPFYFISGTPDHCKNGQRLLVEVMGLHPI************************SLVSVTLLHSVLMSLVIVTI*
*************HGTCVLLLLTLVSMNDGFGVEAVKDFKVGDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKNDSVLEVDKWGYYHCNSSNATVAFNNGKSVFKLDRPGPFYFISGTPDHCKNGQRLLV**************************************LLHSVLMSLVIVTIT
*********LLSFHGTCVLLLLTLVSMNDGFGVEAVKDFKVGDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKNDSVLEVDKWGYYHCNSSNATVAFNNGKSVFKLDRPGPFYFISGTPDHCKNGQRLLVEVMGLHPISQSPPAIAVPPDSYLAPGPLPSSGSLVSVTLLHSVLMSLVIVTIT
****KMWSSLLSFHGTCVLLLLTLVSMNDGFGVEAVKDFKVGDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKNDSVLEVDKWGYYHCNSSNATVAFNNGKSVFKLDRPGPFYFISGTPDHCKNGQRLLVEVMGL****************************LVSVTLLHSVLMSLVIVTIT
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
ooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKQTKMWSSLLSFHGTCVLLLLTLVSMNDGFGVEAVKDFKVGDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKNDSVLEVDKWGYYHCNSSNATVAFNNGKSVFKLDRPGPFYFISGTPDHCKNGQRLLVEVMGLHPISQSPPAIAVPPDSYLAPGPLPSSGSLVSVTLLHSVLMSLVIVTIT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query188 2.2.26 [Sep-21-2011]
Q9T076 349 Early nodulin-like protei no no 0.75 0.404 0.408 8e-20
Q9SK27182 Early nodulin-like protei no no 0.803 0.829 0.369 1e-19
P80728108 Mavicyanin OS=Cucurbita p N/A no 0.484 0.842 0.423 1e-16
Q8LC95186 Early nodulin-like protei no no 0.510 0.516 0.383 4e-15
Q5JNJ5237 Early nodulin-like protei no no 0.755 0.599 0.329 1e-14
P93328180 Early nodulin-16 OS=Medic N/A no 0.696 0.727 0.345 1e-13
P00302107 Stellacyanin OS=Toxicoden N/A no 0.526 0.925 0.326 3e-10
Q41001189 Blue copper protein OS=Pi N/A no 0.5 0.497 0.366 6e-10
O80517202 Uclacyanin-2 OS=Arabidops no no 0.430 0.400 0.404 9e-10
P93329268 Early nodulin-20 OS=Medic N/A no 0.632 0.444 0.325 9e-10
>sp|Q9T076|ENL2_ARATH Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1 Back     alignment and function desciption
 Score = 96.7 bits (239), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 11  LSFHGTCVLLLLTLVSMNDGFGVEAVKDFKVGDGFGW-QEPGHNNTAMYSQWATRNRFHV 69
           LSF  T +L L TL      F +   + F VG    W   P  N    Y  W+ +NRF V
Sbjct: 9   LSFFFTILLSLSTL------FTISNARKFNVGGSGAWVTNPPEN----YESWSGKNRFLV 58

Query: 70  GDSLSFEYKN--DSVLEVDKWGYYHCNSSNATVAFNNGKSVFKLDRPGPFYFISGTPDHC 127
            D+L F Y    DSVLEV+K  Y  CN+ N     ++G S   LDR GPFYFISG  D+C
Sbjct: 59  HDTLYFSYAKGADSVLEVNKADYDACNTKNPIKRVDDGDSEISLDRYGPFYFISGNEDNC 118

Query: 128 KNGQRLLVEVMGLH-PISQSPPAIAVP----PDSYLAPG 161
           K GQ+L V V+    P +   P  A P    P S   PG
Sbjct: 119 KKGQKLNVVVISARIPSTAQSPHAAAPGSSTPGSMTPPG 157

Arabidopsis thaliana (taxid: 3702)
>sp|Q9SK27|ENL1_ARATH Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2 Back     alignment and function description
>sp|P80728|MAVI_CUCPE Mavicyanin OS=Cucurbita pepo PE=1 SV=1 Back     alignment and function description
>sp|Q8LC95|ENL3_ARATH Early nodulin-like protein 3 OS=Arabidopsis thaliana GN=At5g25090 PE=1 SV=2 Back     alignment and function description
>sp|Q5JNJ5|ENL1_ORYSJ Early nodulin-like protein 1 OS=Oryza sativa subsp. japonica GN=ENODL1 PE=1 SV=1 Back     alignment and function description
>sp|P93328|NO16_MEDTR Early nodulin-16 OS=Medicago truncatula GN=ENOD16 PE=3 SV=1 Back     alignment and function description
>sp|P00302|STEL_TOXVR Stellacyanin OS=Toxicodendron vernicifluum PE=1 SV=1 Back     alignment and function description
>sp|Q41001|BCP_PEA Blue copper protein OS=Pisum sativum PE=2 SV=1 Back     alignment and function description
>sp|O80517|BCB2_ARATH Uclacyanin-2 OS=Arabidopsis thaliana GN=At2g44790 PE=1 SV=1 Back     alignment and function description
>sp|P93329|NO20_MEDTR Early nodulin-20 OS=Medicago truncatula GN=ENOD20 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query188
224059130176 predicted protein [Populus trichocarpa] 0.882 0.943 0.639 4e-55
224070957180 predicted protein [Populus trichocarpa] 0.882 0.922 0.635 3e-54
225442525187 PREDICTED: early nodulin-like [Vitis vin 0.936 0.941 0.614 2e-53
255549874191 Mavicyanin, putative [Ricinus communis] 0.819 0.806 0.625 2e-48
356547377190 PREDICTED: early nodulin-like protein 1- 0.941 0.931 0.497 6e-43
15219998192 early nodulin-like protein 7 [Arabidopsi 0.670 0.656 0.578 3e-38
27529822179 NtEPc-like protein [Nicotiana tabacum] 0.686 0.720 0.541 3e-38
357454829201 Early nodulin-like protein [Medicago tru 0.75 0.701 0.493 3e-37
449448054163 PREDICTED: early nodulin-like protein 1- 0.771 0.889 0.56 2e-36
449531924163 PREDICTED: early nodulin-like protein 1- 0.648 0.748 0.598 4e-36
>gi|224059130|ref|XP_002299730.1| predicted protein [Populus trichocarpa] gi|222846988|gb|EEE84535.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  219 bits (558), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 110/172 (63%), Positives = 124/172 (72%), Gaps = 6/172 (3%)

Query: 18  VLLLLTLVSMNDGFGVEAVKDFKVGDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEY 77
            +L  T   +  G G  A K FKVGD FGWQEPG N++A+Y+QWATRNRF VGDSLSFEY
Sbjct: 5   AVLFCTCFVIATGLG-NAEKVFKVGDEFGWQEPGQNSSAVYTQWATRNRFQVGDSLSFEY 63

Query: 78  KNDSVLEVDKWGYYHCNSSNATVAFNNGKSVFKLDRPGPFYFISGTPDHCKNGQRLLVEV 137
            NDSV+EVDKWGYYHC+ S   VAFNNG  VFKLDRPGPFYFISGTP+HC  GQRLL+EV
Sbjct: 64  NNDSVIEVDKWGYYHCDGSKPIVAFNNGHGVFKLDRPGPFYFISGTPNHCMGGQRLLIEV 123

Query: 138 MGLHPISQSPPAIAVPPDSYLAPGPLPSSGSLVSVTL--LHSVLMSLVIVTI 187
           MGLH      P  A PP   LAP P PSSG  VSVTL  L ++LM  +I  +
Sbjct: 124 MGLH---HHSPLTATPPAGQLAPSPQPSSGVFVSVTLGSLSTLLMGTLIALL 172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224070957|ref|XP_002303303.1| predicted protein [Populus trichocarpa] gi|222840735|gb|EEE78282.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225442525|ref|XP_002284122.1| PREDICTED: early nodulin-like [Vitis vinifera] gi|297743225|emb|CBI36092.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255549874|ref|XP_002515988.1| Mavicyanin, putative [Ricinus communis] gi|223544893|gb|EEF46408.1| Mavicyanin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356547377|ref|XP_003542089.1| PREDICTED: early nodulin-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|15219998|ref|NP_178098.1| early nodulin-like protein 7 [Arabidopsis thaliana] gi|7715594|gb|AAF68112.1|AC010793_7 F20B17.22 [Arabidopsis thaliana] gi|12324596|gb|AAG52257.1|AC011717_25 hypothetical protein; 85631-84963 [Arabidopsis thaliana] gi|67633502|gb|AAY78675.1| plastocyanin-like domain-containing protein [Arabidopsis thaliana] gi|332198179|gb|AEE36300.1| early nodulin-like protein 7 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|27529822|dbj|BAC53926.1| NtEPc-like protein [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|357454829|ref|XP_003597695.1| Early nodulin-like protein [Medicago truncatula] gi|355486743|gb|AES67946.1| Early nodulin-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|449448054|ref|XP_004141781.1| PREDICTED: early nodulin-like protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449531924|ref|XP_004172935.1| PREDICTED: early nodulin-like protein 1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query188
TAIR|locus:2017819192 ENODL7 "early nodulin-like pro 0.702 0.687 0.552 1.3e-38
TAIR|locus:2028396177 ENODL6 "early nodulin-like pro 0.734 0.779 0.395 2.6e-24
TAIR|locus:2086899188 ENODL5 "early nodulin-like pro 0.691 0.691 0.409 6.1e-23
TAIR|locus:2085775203 ENODL9 "early nodulin-like pro 0.659 0.610 0.416 2.1e-22
TAIR|locus:4010713954145 ENODL21 "early nodulin-like pr 0.547 0.710 0.447 6.3e-21
TAIR|locus:2040164182 ENODL14 "early nodulin-like pr 0.696 0.719 0.401 8e-21
TAIR|locus:2154679 370 ENODL1 "early nodulin-like pro 0.723 0.367 0.418 2.8e-20
TAIR|locus:2137672 349 ENODL2 "early nodulin-like pro 0.75 0.404 0.408 4.4e-20
TAIR|locus:2127861221 ENODL4 "early nodulin-like pro 0.755 0.642 0.381 4.6e-18
TAIR|locus:2081957222 UCC3 "uclacyanin 3" [Arabidops 0.601 0.509 0.401 1.1e-17
TAIR|locus:2017819 ENODL7 "early nodulin-like protein 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 74/134 (55%), Positives = 94/134 (70%)

Query:    10 LLSFHGTCVLLLLTLVS--MNDGFGVEAVKDFKVGDGFGWQEPGHNNTAMYSQWATRNRF 67
             ++    TC L L+  +   +      E  +DFKVGD FGW+ P  N++A+YS WA+ NRF
Sbjct:     3 MMMMRSTCNLTLMLCICALVVASMAAEGPRDFKVGDEFGWRVPLQNDSAVYSHWASSNRF 62

Query:    68 HVGDSLSFEYKNDSVLEVDKWGYYHCNSSNATVAFNNGKSVFKLDRPGPFYFISGTPDHC 127
             H+GDSLSF Y  DSV+EVDKWG+YHCN S+   AF+NG S F LDRPG FYFISG+  HC
Sbjct:    63 HIGDSLSFVYDKDSVMEVDKWGFYHCNGSDPITAFDNGNSTFDLDRPGLFYFISGSNQHC 122

Query:   128 KNGQRLLVEVMGLH 141
              +GQRL+VEVM +H
Sbjct:   123 TSGQRLIVEVMHIH 136
GO:0005507 "copper ion binding" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0009055 "electron carrier activity" evidence=IEA
GO:0031225 "anchored to membrane" evidence=TAS
TAIR|locus:2028396 ENODL6 "early nodulin-like protein 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086899 ENODL5 "early nodulin-like protein 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085775 ENODL9 "early nodulin-like protein 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:4010713954 ENODL21 "early nodulin-like protein 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040164 ENODL14 "early nodulin-like protein 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154679 ENODL1 "early nodulin-like protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2137672 ENODL2 "early nodulin-like protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127861 ENODL4 "early nodulin-like protein 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081957 UCC3 "uclacyanin 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_I001439
hypothetical protein (176 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query188
pfam0229884 pfam02298, Cu_bind_like, Plastocyanin-like domain 3e-28
PLN03148167 PLN03148, PLN03148, Blue copper-like protein; Prov 2e-13
>gnl|CDD|216965 pfam02298, Cu_bind_like, Plastocyanin-like domain Back     alignment and domain information 
 Score =  100 bits (251), Expect = 3e-28
 Identities = 32/76 (42%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 58  YSQWATRNRFHVGDSLSFEYKN--DSVLEVDKWGYYHCNSSNATVAFNNGKSVFKLDRPG 115
           Y+ WA+   F VGD+L F Y     +V+EV K  Y  CN+S     +  G  +  L +PG
Sbjct: 9   YTLWASGKTFRVGDTLVFNYDKGFHNVVEVTKADYESCNTSKPIRTYTTGNDIIPLTKPG 68

Query: 116 PFYFISGTPDHCKNGQ 131
             YFI G P HCK GQ
Sbjct: 69  QHYFICGVPGHCKGGQ 84

This family represents a domain found in flowering plants related to the copper binding protein plastocyanin. Some members of this family may not bind copper due to the lack of key residues. Length = 84
>gnl|CDD|178693 PLN03148, PLN03148, Blue copper-like protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 188
PLN03148167 Blue copper-like protein; Provisional 100.0
PF0229885 Cu_bind_like: Plastocyanin-like domain; InterPro: 99.97
PRK02710119 plastocyanin; Provisional 98.61
PF0012799 Copper-bind: Copper binding proteins, plastocyanin 98.22
TIGR0265699 cyanin_plasto plastocyanin. Members of this family 98.22
TIGR03102115 halo_cynanin halocyanin domain. Halocyanins are bl 97.86
COG3794128 PetE Plastocyanin [Energy production and conversio 97.65
TIGR02375116 pseudoazurin pseudoazurin. Pseudoazurin, also call 97.58
TIGR0265783 amicyanin amicyanin. Members of this family are am 96.84
KOG3858233 consensus Ephrin, ligand for Eph receptor tyrosine 96.62
PF06525196 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Memb 96.54
TIGR03095148 rusti_cyanin rusticyanin. Rusticyanin is a blue co 96.5
PF13473104 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 94.65
TIGR03094195 sulfo_cyanin sulfocyanin. Members of this family a 93.71
PF00812145 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a 93.02
COG4454158 Uncharacterized copper-binding protein [Inorganic 91.33
TIGR03096135 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as de 89.44
TIGR02866201 CoxB cytochrome c oxidase, subunit II. Cytochrome 87.76
PRK02888635 nitrous-oxide reductase; Validated 87.7
PF00116120 COX2: Cytochrome C oxidase subunit II, periplasmic 84.96
PLN02604 566 oxidoreductase 81.17
TIGR02376 311 Cu_nitrite_red nitrite reductase, copper-containin 80.96
COG1622247 CyoA Heme/copper-type cytochrome/quinol oxidases, 80.22
>PLN03148 Blue copper-like protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=8.4e-42  Score=277.96  Aligned_cols=101  Identities=34%  Similarity=0.688  Sum_probs=95.0

Q ss_pred             eeeeEEEecCCCCCCCCCCCCcccccccccCCeEecCceeEEEEeC--CeEEEEeccCCCCCCCCCCcccccCCceEEEe
Q 039052           34 EAVKDFKVGDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKN--DSVLEVDKWGYYHCNSSNATVAFNNGKSVFKL  111 (188)
Q Consensus        34 ~~a~~~~VGg~~GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~~--hsV~~V~~~~Y~~C~~s~p~~~~~~G~~~v~L  111 (188)
                      +.+++|+|||+.||+.+     .+|++||++|+|+|||+|+|+|++  |||+||++++|++|+.++++..|++|++.|+|
T Consensus        18 ~~a~~~~VGd~~GW~~~-----~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~tsG~d~v~L   92 (167)
T PLN03148         18 TTATDHIVGANKGWNPG-----INYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTSGKDFIPL   92 (167)
T ss_pred             ccceEEEeCCCCCcCCC-----CChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceecCCCcEEEe
Confidence            67999999999999943     689999999999999999999984  99999999999999999999999999999999


Q ss_pred             cCcccEEEEeCCCCCCCCCCeEEEEEecC
Q 039052          112 DRPGPFYFISGTPDHCKNGQRLLVEVMGL  140 (188)
Q Consensus       112 ~~~G~~YFic~~~~HC~~GmKl~I~V~~~  140 (188)
                      +++|+|||||+ .+||++||||.|+|.+.
T Consensus        93 ~~~G~~YFIcg-~ghC~~GmKl~I~V~~~  120 (167)
T PLN03148         93 NKAKRYYFICG-NGQCFNGMKVTILVHPL  120 (167)
T ss_pred             cCCccEEEEcC-CCccccCCEEEEEEcCC
Confidence            99999999999 59999999999999653

>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ] Back     alignment and domain information
>PRK02710 plastocyanin; Provisional Back     alignment and domain information
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ] Back     alignment and domain information
>TIGR02656 cyanin_plasto plastocyanin Back     alignment and domain information
>TIGR03102 halo_cynanin halocyanin domain Back     alignment and domain information
>COG3794 PetE Plastocyanin [Energy production and conversion] Back     alignment and domain information
>TIGR02375 pseudoazurin pseudoazurin Back     alignment and domain information
>TIGR02657 amicyanin amicyanin Back     alignment and domain information
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus Back     alignment and domain information
>TIGR03095 rusti_cyanin rusticyanin Back     alignment and domain information
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D Back     alignment and domain information
>TIGR03094 sulfo_cyanin sulfocyanin Back     alignment and domain information
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO) Back     alignment and domain information
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03096 nitroso_cyanin nitrosocyanin Back     alignment and domain information
>TIGR02866 CoxB cytochrome c oxidase, subunit II Back     alignment and domain information
>PRK02888 nitrous-oxide reductase; Validated Back     alignment and domain information
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o Back     alignment and domain information
>PLN02604 oxidoreductase Back     alignment and domain information
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing Back     alignment and domain information
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query188
1ws7_A109 Crystal Structure Of Mavicyanin From Cucurbita Pepo 1e-17
1jer_A138 Cucumber Stellacyanin, Cu2+, Ph 7.0 Length = 138 4e-09
1x9r_A116 Umecyanin From Horse Raddish- Crystal Structure Of 1e-08
2cbp_A96 Cucumber Basic Protein, A Blue Copper Protein Lengt 4e-06
1f56_A91 Spinach Plantacyanin Length = 91 1e-04
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo Medullosa (Zucchini) Length = 109 Back     alignment and structure 
Iteration: 1

 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 62/100 (62%), Gaps = 5/100 (5%)
Query: 40  KVGDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKND--SVLEVDKWGYYHCNSSN 97
           KVGD  GW      +   Y++WA+ N+FHVGDSL F Y N   +VL+VD+  +  CNSS+
Sbjct: 6   KVGDSTGWTTLVPYD---YAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSS 62
Query: 98  ATVAFNNGKSVFKLDRPGPFYFISGTPDHCKNGQRLLVEV 137
              ++ +G     L RPG FYF+ G P HC+ GQ++ ++V
Sbjct: 63  PAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0 Length = 138 Back     alignment and structure
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The Oxidised Form Length = 116 Back     alignment and structure
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein Length = 96 Back     alignment and structure
>pdb|1F56|A Chain A, Spinach Plantacyanin Length = 91 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query188
1x9u_A116 Umecyanin; cupredoxin, phytocyanin, copper binding 3e-40
1ws8_A109 Mavicyanin; oxidized form, phytocyanin, cupredoxin 5e-37
1jer_A138 Cucumber stellacyanin; electron transport, copper, 2e-36
2cbp_A96 Cucumber basic protein; electron transport, phytoc 4e-32
1f56_A91 Plantacyanin; cupredoxin, copper protein, beta bar 7e-31
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Length = 116 Back     alignment and structure
 Score =  131 bits (331), Expect = 3e-40
 Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 36  VKDFKVGDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYK--NDSVLEVDKWGYYHC 93
           ++D+ VG    W+ P   +   Y  WAT   F VGD L F++      V  V K  + +C
Sbjct: 1   MEDYDVGGDMEWKRPS--DPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNC 58

Query: 94  NSSNATVAFNNGKSVFKLDRPGPFYFISGTPDHCKNGQRLLVEVMGLHPISQSPP 148
              N             L+  GP Y+I    DHC+ GQ+L + V+G         
Sbjct: 59  KKENPISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINVVGAGGAGGGAT 113
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Length = 109 Back     alignment and structure
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Length = 138 Back     alignment and structure
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1 Length = 96 Back     alignment and structure
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1 Length = 91 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query188
1jer_A138 Cucumber stellacyanin; electron transport, copper, 100.0
1ws8_A109 Mavicyanin; oxidized form, phytocyanin, cupredoxin 100.0
1x9u_A116 Umecyanin; cupredoxin, phytocyanin, copper binding 100.0
2cbp_A96 Cucumber basic protein; electron transport, phytoc 100.0
1f56_A91 Plantacyanin; cupredoxin, copper protein, beta bar 100.0
1qhq_A140 Protein (auracyanin); electron transfer, cupredoxi 99.21
1bxv_A91 Plastocyanin; copper protein, electron transfer; 1 99.12
2cal_A154 Rusticyanin; iron respiratory electron transport c 99.07
1iuz_A98 Plastocyanin; electron transport; 1.60A {Ulva pert 98.79
2aan_A139 Auracyanin A; cupredoxin fold, electron transport; 98.76
2gim_A106 Plastocyanin; beta sheet, Cu, helix, electron tran 98.73
1kdj_A102 Plastocyanin; electron transfer, photosystem, PAI- 98.71
1pmy_A123 Pseudoazurin; electron transfer(cuproprotein); 1.5 98.69
2plt_A98 Plastocyanin; electron transport; 1.50A {Chlamydom 98.68
1paz_A123 Pseudoazurin precursor; electron transfer(cupropro 98.66
1plc_A99 Plastocyanin; electron transport; 1.33A {Populus n 98.61
1b3i_A97 PETE protein, protein (plastocyanin); electron tra 98.61
1byp_A99 Protein (plastocyanin); electron transfer, photosy 98.58
3erx_A123 Pseudoazurin; copper protein, high-resolution, E t 98.56
3tu6_A127 Pseudoazurin (blue copper protein); cupredoxins, b 98.56
1pcs_A98 Plastocyanin; electron transport; 2.15A {Synechocy 98.51
3ef4_A124 Pseudoazurin, blue copper protein; electron transf 98.46
3c75_A132 Amicyanin; copper proteins, electron transfer comp 98.14
4hci_A100 Cupredoxin 1; structural genomics, niaid, national 98.03
3cvb_A105 Plastocyanin; cupredoxin, SELF assembly, copper, e 97.88
3ay2_A167 Lipid modified azurin protein; beta sandwich, bact 97.79
1cuo_A129 Protein (azurin ISO-2); beta barrel, periplasmic, 97.72
2ux6_A122 Pseudoazurin; type-1 copper, metal-binding, redox 97.69
1id2_A106 Amicyanin; beta barrel, type-1 blue copper protein 97.61
2ov0_A105 Amicyanin; beta-sandwich, electron transport; 0.75 97.58
2iaa_C128 Azurin; quinoprotein, tryptophan tryptophylquinone 97.39
1nwp_A128 Azurin; electron transport, cupredoxin, electron t 97.28
2ccw_A129 Azurin II, AZN-2; electron transport (cuproprotein 97.26
2x11_B177 Ephrin-A5; receptor-signaling protein complex, dev 97.2
1iko_P178 Ephrin-B2; greek KEY, glycosylation, signaling pro 97.16
2vsm_B140 Ephrin-B2; developmental protein, henipavirus, neu 96.99
1iby_A112 Nitrosocyanin; RED copper, cupredoxin, beta hairpi 96.89
3czu_B182 Ephrin-A1; ATP-binding, kinase, nucleotide-binding 96.73
1shx_A138 Ephrin-A5; ephrin signaling, hormone-growth factor 96.51
3d12_B141 Ephrin-B3; beta propeller, protein-receptor comple 96.45
2cua_A135 Protein (CUA); CUA center, electron transport; 1.6 96.36
2wo3_B157 Ephrin-A2; transferase-signaling protein complex, 95.44
3s8f_B168 Cytochrome C oxidase subunit 2; complex IV, respir 95.07
3fsa_A125 Azurin; copper, cupredoxin fold, metal-binding, pr 93.7
1fwx_A595 Nitrous oxide reductase; beta-propeller domain, cu 92.91
2dv6_A 447 Nitrite reductase; electron transfer, reduction, d 92.78
3sbq_A638 Nitrous-oxide reductase; beta-propeller, cupredoxi 91.08
3hei_B132 Ephrin-A1; EPH receptor tyrosine kinase, cell memb 84.57
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Back     alignment and structure
Probab=100.00  E-value=9.2e-44  Score=280.76  Aligned_cols=112  Identities=34%  Similarity=0.635  Sum_probs=99.3

Q ss_pred             eeeEEEecCCCCCCCCCCCCcccccccccCCeEecCceeEEEEeC--CeEEEE-eccCCCCCCCCCCcccccCCceEEEe
Q 039052           35 AVKDFKVGDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKN--DSVLEV-DKWGYYHCNSSNATVAFNNGKSVFKL  111 (188)
Q Consensus        35 ~a~~~~VGg~~GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~~--hsV~~V-~~~~Y~~C~~s~p~~~~~~G~~~v~L  111 (188)
                      +|++|+|||+.||+++++  ..+|++||++|+|+|||+|+|+|++  |+|+|| ++++|+.|+.++++..+++|+++|+|
T Consensus         2 ~a~~~~VGg~~GW~~~~~--~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~~v~L   79 (138)
T 1jer_A            2 QSTVHIVGDNTGWSVPSS--PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIER   79 (138)
T ss_dssp             CCCEEETTGGGCSSCCSS--TTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEE
T ss_pred             CceEEEECCcCcCcCCCC--ccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCCeEEEe
Confidence            478899999999999753  4689999999999999999999993  999999 99999999999999999999999999


Q ss_pred             -cCcccEEEEeCCCCCCCCCCeEEEEEecCCCCCCCCC
Q 039052          112 -DRPGPFYFISGTPDHCKNGQRLLVEVMGLHPISQSPP  148 (188)
Q Consensus       112 -~~~G~~YFic~~~~HC~~GmKl~I~V~~~~~~~~~~p  148 (188)
                       +++|++||||++++||++||||+|+|.+..++++++|
T Consensus        80 ~~~~G~~YFicg~~gHC~~GmKl~I~V~~~~~~~~~~p  117 (138)
T 1jer_A           80 LDELGMHYFVCTVGTHCSNGQKLSINVVAANATVSMPP  117 (138)
T ss_dssp             CCSSEEEEEECCSTTTGGGTCEEEEEEECCC-------
T ss_pred             ccCCcCEEEEcCCCCccccCCEEEEEEcCCCCCCCCCC
Confidence             9999999999999999999999999998876644433
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Back     alignment and structure
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Back     alignment and structure
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1 Back     alignment and structure
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1 Back     alignment and structure
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A Back     alignment and structure
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A Back     alignment and structure
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A Back     alignment and structure
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A Back     alignment and structure
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus} Back     alignment and structure
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A Back     alignment and structure
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A Back     alignment and structure
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1 Back     alignment and structure
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1 Back     alignment and structure
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A* Back     alignment and structure
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A Back     alignment and structure
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A* Back     alignment and structure
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A Back     alignment and structure
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A Back     alignment and structure
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti} Back     alignment and structure
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A Back     alignment and structure
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0 Back     alignment and structure
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A Back     alignment and structure
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A Back     alignment and structure
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae} Back     alignment and structure
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A Back     alignment and structure
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A Back     alignment and structure
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1 Back     alignment and structure
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ... Back     alignment and structure
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C* Back     alignment and structure
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A Back     alignment and structure
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A Back     alignment and structure
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens} Back     alignment and structure
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5 Back     alignment and structure
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E Back     alignment and structure
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A Back     alignment and structure
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B* Back     alignment and structure
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B* Back     alignment and structure
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus} Back     alignment and structure
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B* Back     alignment and structure
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens} Back     alignment and structure
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ... Back     alignment and structure
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ... Back     alignment and structure
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A Back     alignment and structure
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans} Back     alignment and structure
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A Back     alignment and structure
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 188
d2cbpa_96 b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativ 4e-33
d1ws8a_104 b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) 1e-30
d1jera_110 b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativ 1e-28
d1f56a_91 b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia olera 3e-28
>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 96 Back     information, alignment and structure

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

 Score =  111 bits (280), Expect = 4e-33
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 10/102 (9%)

Query: 39  FKVGDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKN--DSVLEVDKWGYYHCNSS 96
           + VG   GW             W    RF  GD L F Y     +V+ V++ G+  CN+ 
Sbjct: 3   YVVGGSGGWTFN-------TESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTP 55

Query: 97  NATVAFNNGKSVFKLDRPGPFYFISGTPDHCKNGQRLLVEVM 138
                + +G+   KL + G  YFI   P HC++G ++ V  +
Sbjct: 56  AGAKVYTSGRDQIKLPK-GQSYFICNFPGHCQSGMKIAVNAL 96
>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]} Length = 104 Back     information, alignment and structure
>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 110 Back     information, alignment and structure
>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 91 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query188
d1ws8a_104 Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663 100.0
d2cbpa_96 Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3 100.0
d1jera_110 Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3 100.0
d1f56a_91 Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 99.97
d1bypa_99 Plastocyanin {White campion (Silene pratensis) [Ta 98.88
d1iuza_98 Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 98.81
d2plta_98 Plastocyanin {Green alga (Chlamydomonas reinhardti 98.72
d1kdja_102 Plastocyanin {Fern (Adiantum capillus-veneris) [Ta 98.71
d2jxma197 Plastocyanin {Photosynthetic prokaryote (Prochloro 98.63
d2q5ba1105 Plastocyanin {Cyanobacterium (Phormidium laminosum 98.61
d2cj3a1105 Plastocyanin {Anabaena variabilis [TaxId: 1172]} 98.59
d1plca_99 Plastocyanin {Poplar (Populus nigra), variant ital 98.53
d1adwa_123 Pseudoazurin {Thiosphaera pantotropha [TaxId: 8236 98.48
d1paza_120 Pseudoazurin {Alcaligenes faecalis, strain s-6 [Ta 98.48
d1pcsa_98 Plastocyanin {Cyanobacterium (Synechocystis sp.), 98.36
d1qhqa_139 Auracyanin {Chloroflexus aurantiacus [TaxId: 1108] 98.3
d1pmya_123 Pseudoazurin {Methylobacterium extorquens, strain 98.25
d1bqka_124 Pseudoazurin {Achromobacter cycloclastes [TaxId: 2 98.25
d1bxua_91 Plastocyanin {Cyanobacterium (Synechocystis sp.), 98.23
d2ov0a1105 Amicyanin {Paracoccus denitrificans [TaxId: 266]} 98.09
d1id2a_106 Amicyanin {Paracoccus versutus (Thiobacillus versu 97.77
d1cuoa_129 Azurin {Methylomonas sp. j [TaxId: 32038]} 97.37
d2ccwa1129 Azurin {Alcaligenes xylosoxidans, NCIMB (11015), d 97.17
d1ibya_112 Red copper protein nitrosocyanin {Nitrosomonas eur 97.04
d1e30a_153 Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920 97.02
d1shxa1138 Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]} 96.37
d1jzga_128 Azurin {Pseudomonas aeruginosa [TaxId: 287]} 96.2
d1fwxa1132 Nitrous oxide reductase, C-terminal domain {Paraco 96.09
d1nwpa_128 Azurin {Pseudomonas putida [TaxId: 303]} 95.77
d1qnia1131 Nitrous oxide reductase, C-terminal domain {Pseudo 95.77
d2cuaa_122 Cytochrome c oxidase {Thermus thermophilus, ba3 ty 95.69
d1ikop_141 Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId: 95.09
d1aoza1129 Ascorbate oxidase {Zucchini (Cucurbita pepo var. m 93.85
d1kbva1151 Nitrite reductase, NIR {Neisseria gonorrhoeae, Ani 92.68
d1oe2a1159 Nitrite reductase, NIR {Alcaligenes xylosoxidans [ 89.73
d2q9oa1162 Laccase {Melanocarpus albomyces [TaxId: 204285]} 87.19
d1yela1102 At1g16640 {Thale cress (Arabidopsis thaliana) [Tax 87.08
d1mzya1153 Nitrite reductase, NIR {Rhodobacter sphaeroides [T 85.36
d1gyca1130 Laccase {Trametes versicolor, laccase 2 [TaxId: 53 84.29
d2bw4a1157 Nitrite reductase, NIR {Alcaligenes xylosoxidans [ 82.16
>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]} Back     information, alignment and structure
class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Mavicyanin
species: Zucchini (Cucurbita pepo) [TaxId: 3663]

Probab=100.00  E-value=6.4e-39  Score=239.89  Aligned_cols=101  Identities=43%  Similarity=0.841  Sum_probs=95.7

Q ss_pred             eeEEEecCCCCCCCCCCCCcccccccccCCeEecCceeEEEEeC--CeEEEEeccCCCCCCCCCCcccccCCceEEEecC
Q 039052           36 VKDFKVGDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKN--DSVLEVDKWGYYHCNSSNATVAFNNGKSVFKLDR  113 (188)
Q Consensus        36 a~~~~VGg~~GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~~--hsV~~V~~~~Y~~C~~s~p~~~~~~G~~~v~L~~  113 (188)
                      |++|+|||+.||+.++   ..+|++||++++|++||+|+|+|+.  |+|+||++++|++|+..+++..+++|++.|+|++
T Consensus         2 at~~~VGg~~gW~~~~---~~~Y~~Wa~~~~f~vGD~l~F~y~~~~h~V~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~   78 (104)
T d1ws8a_           2 ATVHKVGDSTGWTTLV---PYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKR   78 (104)
T ss_dssp             CCEEETTGGGCSCSSS---CCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECCS
T ss_pred             CcEEEeCCcCccCcCC---CcCHHHHhhCCcCCCCCEEEEEECCCCceEEEECHHHhcCCcCCCccccccCCCeEEEEec
Confidence            6899999999999875   3579999999999999999999994  9999999999999999999999999999999999


Q ss_pred             cccEEEEeCCCCCCCCCCeEEEEEec
Q 039052          114 PGPFYFISGTPDHCKNGQRLLVEVMG  139 (188)
Q Consensus       114 ~G~~YFic~~~~HC~~GmKl~I~V~~  139 (188)
                      +|++||||++++||++||||.|+|++
T Consensus        79 ~g~~yF~C~~~~HC~~Gmkl~I~V~P  104 (104)
T d1ws8a_          79 PGTFYFLCGIPGHCQLGQKVEIKVDP  104 (104)
T ss_dssp             SEEEEEECCSTTTTTTTCEEEEEECC
T ss_pred             CccEEEECCCcchhhCCCEEEEEECC
Confidence            99999999999999999999999964
>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Back     information, alignment and structure
>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Back     information, alignment and structure
>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d1bypa_ b.6.1.1 (A:) Plastocyanin {White campion (Silene pratensis) [TaxId: 52853]} Back     information, alignment and structure
>d1iuza_ b.6.1.1 (A:) Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 3120]} Back     information, alignment and structure
>d2plta_ b.6.1.1 (A:) Plastocyanin {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1kdja_ b.6.1.1 (A:) Plastocyanin {Fern (Adiantum capillus-veneris) [TaxId: 13818]} Back     information, alignment and structure
>d2jxma1 b.6.1.1 (A:1-97) Plastocyanin {Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]} Back     information, alignment and structure
>d2q5ba1 b.6.1.1 (A:1-105) Plastocyanin {Cyanobacterium (Phormidium laminosum) [TaxId: 32059]} Back     information, alignment and structure
>d2cj3a1 b.6.1.1 (A:1-105) Plastocyanin {Anabaena variabilis [TaxId: 1172]} Back     information, alignment and structure
>d1plca_ b.6.1.1 (A:) Plastocyanin {Poplar (Populus nigra), variant italica [TaxId: 3691]} Back     information, alignment and structure
>d1adwa_ b.6.1.1 (A:) Pseudoazurin {Thiosphaera pantotropha [TaxId: 82367]} Back     information, alignment and structure
>d1paza_ b.6.1.1 (A:) Pseudoazurin {Alcaligenes faecalis, strain s-6 [TaxId: 511]} Back     information, alignment and structure
>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1qhqa_ b.6.1.1 (A:) Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]} Back     information, alignment and structure
>d1pmya_ b.6.1.1 (A:) Pseudoazurin {Methylobacterium extorquens, strain am1 [TaxId: 408]} Back     information, alignment and structure
>d1bqka_ b.6.1.1 (A:) Pseudoazurin {Achromobacter cycloclastes [TaxId: 223]} Back     information, alignment and structure
>d1bxua_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]} Back     information, alignment and structure
>d2ov0a1 b.6.1.1 (A:1-105) Amicyanin {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1id2a_ b.6.1.1 (A:) Amicyanin {Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d1cuoa_ b.6.1.1 (A:) Azurin {Methylomonas sp. j [TaxId: 32038]} Back     information, alignment and structure
>d2ccwa1 b.6.1.1 (A:1-129) Azurin {Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]} Back     information, alignment and structure
>d1ibya_ b.6.1.4 (A:) Red copper protein nitrosocyanin {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1shxa1 b.6.1.5 (A:32-170) Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jzga_ b.6.1.1 (A:) Azurin {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1fwxa1 b.6.1.4 (A:452-581) Nitrous oxide reductase, C-terminal domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1nwpa_ b.6.1.1 (A:) Azurin {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]} Back     information, alignment and structure
>d1ikop_ b.6.1.5 (P:) Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]} Back     information, alignment and structure
>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria gonorrhoeae, AniA [TaxId: 485]} Back     information, alignment and structure
>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]} Back     information, alignment and structure
>d2q9oa1 b.6.1.3 (A:1-162) Laccase {Melanocarpus albomyces [TaxId: 204285]} Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d1gyca1 b.6.1.3 (A:1-130) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]} Back     information, alignment and structure
>d2bw4a1 b.6.1.3 (A:8-164) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]} Back     information, alignment and structure