Citrus Sinensis ID: 039053

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------
Protein Sequence
MDTRISSVLVLVAFMLAFISMEASFVQGQGGANLDSHNNKNNGKKGAFDAASTHYSLLTPLPSGQERAFCQARGACNMKTLVCPSQCPERKPRKNRKRKGCFIDCSSKCEVTCKWRKPNCNGYGSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPQGRTRDFTWVQALAVMFDTHTLVIAANRVSHWNDDVDALTVRWDGQTVDVRTDGEAEWRINDEREVVVERTDDTNSVRVTVSGLLEMDVKIRPIGAEENRTHNYQLPAGDAFAHLETQFRFSNLSKLVEGVLGKTYRPDYVSHVKRGVPMPMMGGEDKYQTPSLYSPLCNFCRFQRQPGSAIEGVSQY
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccccccccccEEccccccccccEEccccccccccEEcccccccccccccccccccEEccccccccccEEEcccccccccccccccEEEcccccEEEEEEcccccEEEEEccccEEEEEEEcccccccccccEEEEEEEEEEcccEEEEEEEEccccccccccEEEEEcccEEEEccccccEEEccccccEEEEEEccccEEEEEEccEEEEEEEEEEcccccccccccccccccccEEEEEEEEEEcccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHcccccEEccccccccHEEcccccccccEEEEcccccccccccccccccEEEEEccccccccEEEEcccccccccccccccEEccccEEEEEEccccccEEEEEccccEEEEEEEcccccccccccHHHHHEEEEEcccEEEEEEEEcccccccccEEEEEEcccEEEcccccccEEcccccccEEEEEEccccEEEEEEccEEEEEEEEEEccccccccccccccccccEEEEEEEEEEEcccccccEEEccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccc
Coil and Loop (DISEMBL)
MDTRISSVLVLVAFMLAFISMEASfvqgqgganldshnnknngkkgaFDAASThyslltplpsgqeRAFCQArgacnmktlvcpsqcperkprknrkrkgcfidcsskcevtckwrkpncngygslcydprfvggdgvmfyfhgakggnfaivsddnlqinahfigtrpqgrtrdfTWVQALAVMFDTHTLVIAANrvshwnddvdaltvrwdgqtvdvrtdgeaewrinderevvvertddtnsVRVTVSGLLemdvkirpigaeenrthnyqlpagdafahletqfrFSNLSKLVegvlgktyrpdyvshvkrgvpmpmmggedkyqtpslysplcnfcrfqrqpgsaiegvsqy
Flexible Loop (DISEMBL)
MDTRISSVLVLVAFMLAFISMEASFVQGQGGANLDSHNNKNNGKKGAFDAASTHYSLLTPLPSGQERAFCQARGACNMktlvcpsqcperkprknrkrkgcfidcsskcevtckwrkpncnGYGSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFigtrpqgrtRDFTWVQALAVMFDTHTLVIAANRVSHWNDDVDaltvrwdgqtvdvrtdgeaewrinderevvvertddtnsvrvtvsgllemdvKIRPIGAEENRTHNYQLPAGDAFAHLETQFRFSNLSKLVEgvlgktyrpdyvshvKRGVPMPMMGGEDKYQTPSLYSPLCNFCRFQRqpgsaiegvsqy
Low Complexity Region (SEG)
MDTRISSVLVLVAFMLAFISMEASFVQGQGGANLDSHNNKNNGKKGAFDAASTHYSLLTPLPSGQERAFCQARGACNMKTLVCPSQCPErkprknrkrkGCFIDCSSKCEVTCKWRKPNCNGYGSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPQGRTRDFTWVQALAVMFDTHTLVIAANRVSHWNDDVDALTVRWDGQTVDVRTDGEAEWRINDEREVVVERTDDTNSVRVTVSGLLEMDVKIRPIGAEENRTHNYQLPAGDAFAHLETQFRFSNLSKLVEGVLGKTYRPDYVSHVKRGVPMPMMGGEDKYQTPSLYSPLCNFCRFQRQPGSAIEGVSQY
Disordered region (IsUnstruct)
*****SSVLVLVAFMLAFISMEASFVQ***************************YSLLT******ERAFCQARGACNMKTLVCP**************KGCFIDCSSKCEVTCKWRKPNCNGYGSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPQGRTRDFTWVQALAVMFDTHTLVIAANRVSHWNDDVDALTVRWDGQTVDVRTDGEAEWRINDEREVVVERTDDTNSVRVTVSGLLEMDVKIRPIGAEENRTHNYQLPAGDAFAHLETQFRFSNLSKLVEGVLGKTYRPDYVSHVKRGVPM*******KYQTPSLYSPLCNFCRFQ*************
Disordered Region (DISOPRED)
*********VLVAFMLAFISMEASFV**********************************LPSGQERAFCQARGACNMKTLVCPSQCPERKP**NRKRKGCFIDCSSKCEVTCKWRKPNCNGYGSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPQGRTRDFTWVQALAVMFDTHTLVIAANRVSHWNDDVDALTVRWDGQTVDVRTDGEAEW*INDEREVVVERTDDTNSVRVTVSGLLEMDVKIRPIGAEENRTHNYQLPAGDAFAHLETQFRFSNLSKLVEGVLGKTYRPDYVSHVKRGVPMPMMGGEDKYQTPSLYSPLCNFC****************
Disordered Region (DISEMBL)
MDTRISSVLVLVAFMLAFISMEASFVQGQGGANLDSHNNKNNGKKGAFDAASTHYSLLTPLPSGQERAFCQARGACNMKTLVCPSQCP**********KGCFIDCSSKCEVTCKWRKPNCNGYGSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPQGRTRDFTWVQALAVMFDTHTLVIAANRVSHWNDDVDALTVRWDGQTVDVRTDGEAEWRINDEREVVVERTDDTNSVRVTVSGLLEMDVKIRPIGAEENRTHNYQLPAGDAFAHLETQFRFSNLSKLVEGVLGKTYRPDYVSHVKRGVPMPMMGGEDKYQTPSLYSPLCNFCRFQRQPGSAIEGVSQY
Disordered Region (DISPRO)
*DTRISSVLVLVAFMLAFISMEASFVQGQGG********************STHYSLLTPLPSGQERAFCQARGACNMKTLVCPSQCPERKPRKNRKRKGCFIDCSSKCEVTCKWRKPNCNGYGSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPQGRTRDFTWVQALAVMFDTHTLVIAANRVSHWNDDVDALTVRWDGQTVDVRTDGEAEWRINDEREVVVERTDDTNSVRVTVSGLLEMDVKIRPIGAEENRTHNYQLPAGDAFAHLETQFRFSNLSKLVEGVLGKTYRPDYVSHVKRGVPMPMMGGEDKYQTPSLYSPLCNFCRFQRQ***********
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDTRISSVLVLVAFMLAFISMEASFVQGQGGANLDSHNNKNNGKKGAFDAASTHYSLLTPLPSGQERAFCQARGACNMKTLVCPSQCPERKPRKNRKRKGCFIDCSSKCEVTCKWRKPNCNGYGSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPQGRTRDFTWVQALAVMFDTHTLVIAANRVSHWNDDVDALTVRWDGQTVDVRTDGEAEWRINDEREVVVERTDDTNSVRVTVSGLLEMDVKIRPIGAEENRTHNYQLPAGDAFAHLETQFRFSNLSKLVEGVLGKTYRPDYVSHVKRGVPMPMMGGEDKYQTPSLYSPLCNFCRFQRQPGSAIEGVSQY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	357
224104655	343	predicted protein [Populus trichocarpa]	0.949	0.988	0.741	1e-152
255578882	351	structural constituent of cell wall, put	0.977	0.994	0.710	1e-149
225435287	368	PREDICTED: uncharacterized protein LOC10	0.974	0.945	0.715	1e-143
388491458	393	unknown [Lotus japonicus]	0.857	0.778	0.734	1e-139
15239359	338	late embryogenesis abundant protein-like	0.871	0.920	0.749	1e-138
255578880	335	structural constituent of cell wall, put	0.915	0.976	0.693	1e-137
388501584	358	unknown [Medicago truncatula]	0.854	0.851	0.739	1e-132
357472233	386	hypothetical protein MTR_4g059630 [Medic	0.854	0.790	0.739	1e-132
15239360	439	late embryogenesis abundant protein-like	0.837	0.681	0.694	1e-130
15809990	439	AT5g60530/muf9_180 [Arabidopsis thaliana	0.837	0.681	0.691	1e-129

>gi|224104655|ref|XP_002313517.1| predicted protein [Populus trichocarpa] gi|222849925|gb|EEE87472.1| predicted protein [Populus trichocarpa]

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 261/352 (74%), Positives = 294/352 (83%), Gaps = 13/352 (3%)

Query: 1   MDTRISSVLVLVAFMLAFISMEASFVQGQGGANLDSHNNKNNGKKGAFDAASTHYSLLTP 60
           MD +  S  +L AF L ++S +A  VQG            +  KK  FDAA THYS+L+P
Sbjct: 1   MDIKRKSC-ILAAFFLVYVSRKAYSVQGAN----------SKAKKSPFDAAITHYSMLSP 49

Query: 61  LPSGQERAFCQARGACNMKTLVCPSQCPERKPRKNRKRKGCFIDCSSKCEVTCKWRKPNC 120
            PSG ERAFCQARGAC  KTLVCP QC  RKP KN+K+KGCFI+CSSKCEVTCK+R+PNC
Sbjct: 50  SPSGNERAFCQARGACRSKTLVCPDQCKVRKPVKNKKQKGCFINCSSKCEVTCKFRRPNC 109

Query: 121 NGYGSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPQGRTRDFTWVQ 180
           NGYGSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRP+GRTRDFTWVQ
Sbjct: 110 NGYGSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPKGRTRDFTWVQ 169

Query: 181 ALAVMFDTHTLVIAANRVSHWNDDVDALTVRWDGQTVD-VRTDGEAEWRIN-DEREVVVE 238
           AL++MFDTHTLVIAA RVS W+D+ DALTV+W+GQTVD + TDG+AEWR N +EREVVVE
Sbjct: 170 ALSIMFDTHTLVIAAKRVSKWDDNFDALTVKWNGQTVDNIPTDGDAEWRANGEEREVVVE 229

Query: 239 RTDDTNSVRVTVSGLLEMDVKIRPIGAEENRTHNYQLPAGDAFAHLETQFRFSNLSKLVE 298
           RTDDTN+VRV V+ L+E+++K+RPIG EENR HNYQLP  DAFAHLETQF+F NL+ LVE
Sbjct: 230 RTDDTNTVRVQVANLVELNIKVRPIGKEENRAHNYQLPENDAFAHLETQFKFFNLTDLVE 289

Query: 299 GVLGKTYRPDYVSHVKRGVPMPMMGGEDKYQTPSLYSPLCNFCRFQRQPGSA 350
           GVLGKTYR  YVS VK GVPMPMMGGEDKYQTPSLYSPLCN CRFQ Q G+A
Sbjct: 290 GVLGKTYRAGYVSPVKIGVPMPMMGGEDKYQTPSLYSPLCNVCRFQPQSGTA 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578882|ref|XP_002530295.1| structural constituent of cell wall, putative [Ricinus communis] gi|223530193|gb|EEF32102.1| structural constituent of cell wall, putative [Ricinus communis]

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 255/359 (71%), Positives = 298/359 (83%), Gaps = 10/359 (2%)

Query: 1   MDTRISSVLVLVAFMLAFISMEASFVQGQGGANLDSHNNKNNGKKGAFDAASTHYSLLTP 60
           MD R S +L+  AF L F+ MEA+ VQ Q        +N ++ KK  +DAA THY +L  
Sbjct: 1   MDKRKSCMLL--AFFLVFVLMEANTVQAQ------KKSNSSSIKKSPYDAAITHYYMLPT 52

Query: 61  LPSGQERAFCQARGACNMKTLVCPSQCPERKPRKNRKRKGCFIDCSSKCEVTCKWRKPNC 120
           LP+G E+A+C ARGAC  KTLVCP QC ERKP +N+K+KGCFIDCSSKCE TC+WR+PNC
Sbjct: 53  LPTGNEQAYCLARGACQNKTLVCPDQCKERKPAQNKKQKGCFIDCSSKCEATCRWRRPNC 112

Query: 121 NGYGSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPQGRTRDFTWVQ 180
           NGYGSLCYDPRFVGGDGVMFYFHG KGGNFAIVSDDNLQINAH IGTRPQGRTRDFTWVQ
Sbjct: 113 NGYGSLCYDPRFVGGDGVMFYFHGEKGGNFAIVSDDNLQINAHLIGTRPQGRTRDFTWVQ 172

Query: 181 ALAVMFDTHTLVIAANRVSHWNDDVDALTVRWDGQTVDVRTDGEAEWRIN-DEREVVVER 239
           AL++MFDTHTLVIAA +V+HW++++DAL V+WDG  VD+ TDGEAEWR N +EREVVVER
Sbjct: 173 ALSIMFDTHTLVIAAKKVAHWDNNIDALIVKWDGMVVDIPTDGEAEWRTNGEEREVVVER 232

Query: 240 TDDTNSVRVTVSGLLEMDVKIRPIGAEENRTHNYQLPAGDAFAHLETQFRFSNLSKLVEG 299
           TDD N+VR TV+ L+E+++K+RPIG EENR HNYQLP  DAFAHLETQF+F NL+ LVEG
Sbjct: 233 TDDANTVRTTVANLVELNIKVRPIGKEENRIHNYQLPENDAFAHLETQFKFFNLTDLVEG 292

Query: 300 VLGKTYRPDYVSHVKRGVPMPMMGGEDKYQTPSLYSPLCNFCRFQRQPG-SAIEGVSQY 357
           VLGKTYRPDYVS VK GVPMPMMGGEDKY+ PS++SPLC+ CRFQRQ    AI+ VS+Y
Sbjct: 293 VLGKTYRPDYVSPVKIGVPMPMMGGEDKYRIPSIFSPLCSVCRFQRQFSFEAIKEVSEY 351

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435287|ref|XP_002282268.1| PREDICTED: uncharacterized protein LOC100265658 [Vitis vinifera] gi|297746242|emb|CBI16298.3| unnamed protein product [Vitis vinifera]

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 257/359 (71%), Positives = 300/359 (83%), Gaps = 11/359 (3%)

Query: 10  VLVAFMLAFISMEASFVQGQGGANLDSHNNKNNG---------KKGAFDAASTHYSLLTP 60
           +LVAF +   ++EA+FV  QG  N + +NN N           +  A +AAST+Y++L+ 
Sbjct: 10  LLVAFFVVLAAIEATFVLAQGNGNGNGNNNGNGNGNGNGNSNNRTAAEEAASTNYTMLSS 69

Query: 61  LPSGQERAFCQARGACNMKTLVCPSQCPERKPRKNRKRKGCFIDCSSKCEVTCKWRKPNC 120
              GQERAFC+ARGAC  KTLVCP++CP+RKP+KNRK+KGCFIDC SKCEVTCK+RK  C
Sbjct: 70  TAKGQERAFCKARGACYFKTLVCPTECPQRKPKKNRKKKGCFIDCGSKCEVTCKYRKAKC 129

Query: 121 NGYGSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPQGRTRDFTWVQ 180
            GYGSLCYDPRF+GGDGVMFYFHGAKGG+FAIVSDDNL INAHFIGTRP  RTRDFTWVQ
Sbjct: 130 TGYGSLCYDPRFIGGDGVMFYFHGAKGGDFAIVSDDNLHINAHFIGTRPATRTRDFTWVQ 189

Query: 181 ALAVMFDTHTLVIAANRVSHWNDDVDALTVRWDGQTVDVRTDGEAEWRIN-DEREVVVER 239
           A +VMFDTHTLVIAA+RVSHW+DDVDAL VRWDG+TV + TDGEAEWR++  EREVVVER
Sbjct: 190 AFSVMFDTHTLVIAADRVSHWDDDVDALIVRWDGETVTIPTDGEAEWRVDCGEREVVVER 249

Query: 240 TDDTNSVRVTVSGLLEMDVKIRPIGAEENRTHNYQLPAGDAFAHLETQFRFSNLSKLVEG 299
           TDDTNSVRVTV GL+EMDV++ P+GA+ENR HNYQLPA DAFAHLETQF F NL++ VEG
Sbjct: 250 TDDTNSVRVTVGGLVEMDVRVTPVGADENRVHNYQLPADDAFAHLETQFSFKNLTESVEG 309

Query: 300 VLGKTYRPDYVSHVKRGVPMPMMGGEDKYQTPSLYSPLCNFCRFQRQPG-SAIEGVSQY 357
           VLGKTYRP YVS VKRGVPMP+MGGEDKY+TPSL+SPLC  CRFQ Q G ++ +GVS+Y
Sbjct: 310 VLGKTYRPGYVSPVKRGVPMPVMGGEDKYRTPSLFSPLCKLCRFQPQVGLTSAQGVSEY 368

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491458|gb|AFK33795.1| unknown [Lotus japonicus]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 227/309 (73%), Positives = 266/309 (86%), Gaps = 3/309 (0%)

Query: 52  STHYSLLTPLPSGQERAFCQARGACNMKTLVCPSQCPERKPRKNRKRKGCFIDCSSKCEV 111
           ++ Y +L+ LPSGQERAFC+A+  C  KTL CP++C +RKP+ N+K KGCFIDCSSKCE 
Sbjct: 85  ASEYEVLSALPSGQERAFCKAKNTCQFKTLSCPAECQKRKPKNNKKAKGCFIDCSSKCEA 144

Query: 112 TCKWRKPNCNGYGSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPQG 171
           TCK+RK  C+GYG+LCYDPRFVGGDGVMFYFHGAKGGNFAI SDD  QINAHFIGTRP+G
Sbjct: 145 TCKFRKSKCDGYGALCYDPRFVGGDGVMFYFHGAKGGNFAIASDDEFQINAHFIGTRPEG 204

Query: 172 RTRDFTWVQALAVMFDTHTLVIAANRVSHWNDDVDALTVRWDGQTVDVRTDGEAEWRIN- 230
           RTRD+TWVQAL+VMFDTHTLVIAANRVS W+D+VD+L V+WDG+ + V TDGEAEWR N 
Sbjct: 205 RTRDYTWVQALSVMFDTHTLVIAANRVSKWDDNVDSLIVKWDGEEISVPTDGEAEWRANG 264

Query: 231 DEREVVVERTDDTNSVRVTVSGLLEMDVKIRPIGAEENRTHNYQLPAGDAFAHLETQFRF 290
           DEREVVVERTD+TN+VRVTVSGLLEMD+++RPIG +EN+ HNYQLP+ DAFAHLETQFRF
Sbjct: 265 DEREVVVERTDETNNVRVTVSGLLEMDIRVRPIGEKENKVHNYQLPSDDAFAHLETQFRF 324

Query: 291 SNLSKLVEGVLGKTYRPDYVSHVKRGVPMPMMGGEDKYQTPSLYSPLCNFCRFQRQPGSA 350
              +  +EG+LG+TYRP YVS VKRGVPMPMMGGEDKYQTP+LYS  C  CRF+R  GSA
Sbjct: 325 KKHTDSIEGILGQTYRPGYVSPVKRGVPMPMMGGEDKYQTPTLYSTTCKHCRFERPSGSA 384

Query: 351 -IEG-VSQY 357
             EG ++QY
Sbjct: 385 STEGIIAQY 393

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239359|ref|NP_200860.1| late embryogenesis abundant protein-like protein [Arabidopsis thaliana] gi|9757754|dbj|BAB08235.1| unnamed protein product [Arabidopsis thaliana] gi|40823110|gb|AAR92259.1| At5g60520 [Arabidopsis thaliana] gi|332009956|gb|AED97339.1| late embryogenesis abundant protein-like protein [Arabidopsis thaliana]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 236/315 (74%), Positives = 273/315 (86%), Gaps = 4/315 (1%)

Query: 44  KKGAFDAASTHYSLLTPLPSGQERAFCQARGACNMKTLVCPSQCPERKPRKNRKRKGCFI 103
           KKGA+DAAST+Y++L PL SGQER  C ARG+CN K L CP +CPERKP+ N+K+K CFI
Sbjct: 27  KKGAYDAASTNYNVLYPLGSGQERVQCLARGSCNQKILTCPKECPERKPKMNKKKKACFI 86

Query: 104 DCSSKCEVTCKWRKPNCNGYGSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDNLQINAH 163
           DCSSKCEVTCKWRK NCNGYGSLCYDPRFVGGDGVMFYFHG K GNFAIVSD+NLQINAH
Sbjct: 87  DCSSKCEVTCKWRKANCNGYGSLCYDPRFVGGDGVMFYFHGNKDGNFAIVSDENLQINAH 146

Query: 164 FIGTRPQGRTRDFTWVQALAVMFDTHTLVIAANRVSHWNDDVDALTVRWDGQTVDVRTDG 223
           FIGTRP GRTRDFTWVQA +VMFD+H LVIAA +V+ W+D VD+L VRW+G+ V+V T+G
Sbjct: 147 FIGTRPAGRTRDFTWVQAFSVMFDSHNLVIAAKKVASWDDSVDSLVVRWNGEEVEVPTEG 206

Query: 224 EAEWRIN-DEREVVVERTDDTNSVRVTVSGLLEMDVKIRPIGAEENRTHNYQLPAGDAFA 282
           EAEWRI+ DEREV+VERTD+ N+VRVTVSG++++D+++RPIG EE+R H YQLP  DAFA
Sbjct: 207 EAEWRIDLDEREVIVERTDERNNVRVTVSGIVQIDIQVRPIGKEEDRVHKYQLPKDDAFA 266

Query: 283 HLETQFRFSNLSKLVEGVLGKTYRPDYVSHVKRGVPMPMMGGEDKYQTPSLYSPLCNFCR 342
           HLETQF+F NLS LVEGVLGKTYRP YVS VK GVPMPMMGGEDKYQTPSL+SPLCN CR
Sbjct: 267 HLETQFKFFNLSDLVEGVLGKTYRPGYVSPVKTGVPMPMMGGEDKYQTPSLFSPLCNVCR 326

Query: 343 FQRQPGSAIEGVSQY 357
           FQ + G    GV++Y
Sbjct: 327 FQGKTGP---GVAKY 338

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578880|ref|XP_002530294.1| structural constituent of cell wall, putative [Ricinus communis] gi|223530192|gb|EEF32101.1| structural constituent of cell wall, putative [Ricinus communis]

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 240/346 (69%), Positives = 278/346 (80%), Gaps = 19/346 (5%)

Query: 10  VLVAFMLAFISMEASFVQGQGGANLDSHNNKNNGKKGAFDAASTHYSLLTPLPSGQERAF 69
           + VAF +  +  EA+ VQG G           N K   FD A        PL +GQERA 
Sbjct: 8   IWVAFFVVLLVAEATIVQGAG-----------NDKSEDFDEAE-------PLKTGQERAR 49

Query: 70  CQARGACNMKTLVCPSQCPERKPRKNRKRKGCFIDCSSKCEVTCKWRKPNCNGYGSLCYD 129
           C+A+GAC  KTL CP+QCP +KP KN+K+KGC +DCSSKCE TCKWRKPNCNGYGSLCYD
Sbjct: 50  CKAKGACYKKTLECPAQCPNKKPHKNKKQKGCHVDCSSKCEATCKWRKPNCNGYGSLCYD 109

Query: 130 PRFVGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPQGRTRDFTWVQALAVMFDTH 189
           PRFVGGDGVMFYFHGAKGGNFA+VSD+NLQINAHFIGTRPQGRTRDFTWVQAL+VMFDTH
Sbjct: 110 PRFVGGDGVMFYFHGAKGGNFAVVSDNNLQINAHFIGTRPQGRTRDFTWVQALSVMFDTH 169

Query: 190 TLVIAANRVSHWNDDVDALTVRWDGQTVDVRTDGEAEWRIN-DEREVVVERTDDTNSVRV 248
            LVIAA +VS WND++DAL V+WDG+ + + TDG+AEWR+N +EREVVVERTDDTNS+R+
Sbjct: 170 NLVIAAKKVSTWNDNIDALIVKWDGEAISIPTDGQAEWRVNGEEREVVVERTDDTNSLRL 229

Query: 249 TVSGLLEMDVKIRPIGAEENRTHNYQLPAGDAFAHLETQFRFSNLSKLVEGVLGKTYRPD 308
            V+GL+E+D+K+RPIG +EN  HNYQLP  DAFAHLETQF+F NLS LVEG+LGKTYRPD
Sbjct: 230 RVAGLVEIDIKVRPIGKQENLVHNYQLPDDDAFAHLETQFKFKNLSDLVEGILGKTYRPD 289

Query: 309 YVSHVKRGVPMPMMGGEDKYQTPSLYSPLCNFCRFQRQPGSAIEGV 354
           YVS VK GVPMPMMGGEDKYQTPSL SPLC  CRFQ+   + I  +
Sbjct: 290 YVSPVKTGVPMPMMGGEDKYQTPSLLSPLCKACRFQQSQSTGIATI 335

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501584|gb|AFK38858.1| unknown [Medicago truncatula]

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/307 (73%), Positives = 265/307 (86%), Gaps = 2/307 (0%)

Query: 52  STHYSLLTPLPSGQERAFCQARGACNMKTLVCPSQCPERKPRKNRKRKGCFIDCSSKCEV 111
           S++Y  L  LPSGQERAFC+A   C+  TLVCP++C  RKP+KN+K KGCFIDCSSKCE 
Sbjct: 53  SSNYQQLQTLPSGQERAFCKANNTCHFATLVCPAECKTRKPKKNKKDKGCFIDCSSKCEA 112

Query: 112 TCKWRKPNCNGYGSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPQG 171
           TCK+R+ NC+GYGSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDD  QINAHFIGTRPQG
Sbjct: 113 TCKFRRANCDGYGSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDEFQINAHFIGTRPQG 172

Query: 172 RTRDFTWVQALAVMFDTHTLVIAANRVSHWNDDVDALTVRWDGQTVDVRTDGEAEWRIN- 230
           RTRD+TWVQAL++MFDTHTLVIAANRV+ WND+VD+LTV+WDG++V + TD +AEW+ N 
Sbjct: 173 RTRDYTWVQALSLMFDTHTLVIAANRVTQWNDNVDSLTVKWDGESVIIPTDDDAEWKTNG 232

Query: 231 DEREVVVERTDDTNSVRVTVSGLLEMDVKIRPIGAEENRTHNYQLPAGDAFAHLETQFRF 290
           DEREVVVERTDD NSVRVTVSGLLEMD+++RPIG +EN+ HNYQLP+ DAFAHLETQF+F
Sbjct: 233 DEREVVVERTDDANSVRVTVSGLLEMDIRVRPIGEKENKAHNYQLPSDDAFAHLETQFKF 292

Query: 291 SNLSKLVEGVLGKTYRPDYVSHVKRGVPMPMMGGEDKYQTPSLYSPLCNFCRFQRQPGSA 350
            N +  +EGVLG+TYRP YVS VKRGV MPMMGGEDKYQTPSL+S  C  CRFQR P ++
Sbjct: 293 KNPTDSIEGVLGQTYRPSYVSPVKRGVAMPMMGGEDKYQTPSLFSTTCKLCRFQR-PSTS 351

Query: 351 IEGVSQY 357
              ++QY
Sbjct: 352 QGLIAQY 358

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357472233|ref|XP_003606401.1| hypothetical protein MTR_4g059630 [Medicago truncatula] gi|355507456|gb|AES88598.1| hypothetical protein MTR_4g059630 [Medicago truncatula]

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/307 (73%), Positives = 265/307 (86%), Gaps = 2/307 (0%)

Query: 52  STHYSLLTPLPSGQERAFCQARGACNMKTLVCPSQCPERKPRKNRKRKGCFIDCSSKCEV 111
           S++Y  L  LPSGQERAFC+A   C+  TLVCP++C  RKP+KN+K KGCFIDCSSKCE 
Sbjct: 81  SSNYQQLQTLPSGQERAFCKANNTCHFATLVCPAECKTRKPKKNKKDKGCFIDCSSKCEA 140

Query: 112 TCKWRKPNCNGYGSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPQG 171
           TCK+R+ NC+GYGSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDD  QINAHFIGTRPQG
Sbjct: 141 TCKFRRANCDGYGSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDEFQINAHFIGTRPQG 200

Query: 172 RTRDFTWVQALAVMFDTHTLVIAANRVSHWNDDVDALTVRWDGQTVDVRTDGEAEWRIN- 230
           RTRD+TWVQAL++MFDTHTLVIAANRV+ WND+VD+LTV+WDG++V + TD +AEW+ N 
Sbjct: 201 RTRDYTWVQALSLMFDTHTLVIAANRVTQWNDNVDSLTVKWDGESVIIPTDDDAEWKTNG 260

Query: 231 DEREVVVERTDDTNSVRVTVSGLLEMDVKIRPIGAEENRTHNYQLPAGDAFAHLETQFRF 290
           DEREVVVERTDD NSVRVTVSGLLEMD+++RPIG +EN+ HNYQLP+ DAFAHLETQF+F
Sbjct: 261 DEREVVVERTDDANSVRVTVSGLLEMDIRVRPIGEKENKAHNYQLPSDDAFAHLETQFKF 320

Query: 291 SNLSKLVEGVLGKTYRPDYVSHVKRGVPMPMMGGEDKYQTPSLYSPLCNFCRFQRQPGSA 350
            N +  +EGVLG+TYRP YVS VKRGV MPMMGGEDKYQTPSL+S  C  CRFQR P ++
Sbjct: 321 KNPTDSIEGVLGQTYRPSYVSPVKRGVAMPMMGGEDKYQTPSLFSTTCKLCRFQR-PSTS 379

Query: 351 IEGVSQY 357
              ++QY
Sbjct: 380 QGLIAQY 386

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239360|ref|NP_200861.1| late embryogenesis abundant protein-like protein [Arabidopsis thaliana] gi|9757755|dbj|BAB08236.1| unnamed protein product [Arabidopsis thaliana] gi|23308395|gb|AAN18167.1| At5g60530/muf9_180 [Arabidopsis thaliana] gi|332009957|gb|AED97340.1| late embryogenesis abundant protein-like protein [Arabidopsis thaliana]

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 209/301 (69%), Positives = 252/301 (83%), Gaps = 2/301 (0%)

Query: 51  ASTHYSLLTPLPSGQERAFCQARGACNMKTLVCPSQCPERKPRKNRKRKGCFIDCSSKCE 110
           A+  Y +L+PLP+GQE+A CQ RG+C  KTLVCP +CP+RKP KN+  KGCFIDC++KCE
Sbjct: 134 AAARYRILSPLPTGQEQAMCQGRGSCYYKTLVCPGECPKRKPTKNKNTKGCFIDCTNKCE 193

Query: 111 VTCKWRKPNCNGYGSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPQ 170
            TCKWRK NCNGYGSLCYDPRFVGGDGVMFYFHG+KGGNFAIVSD+NLQINAHFIGTRP 
Sbjct: 194 ATCKWRKTNCNGYGSLCYDPRFVGGDGVMFYFHGSKGGNFAIVSDNNLQINAHFIGTRPV 253

Query: 171 GRTRDFTWVQALAVMFDTHTLVIAANRVSHWNDDVDALTVRWDGQTVDVRTDGEAEWR-- 228
           GRTRDFTWVQAL VMF+ H LVI ANRV+ W++  DA T+R+DG+ + +  D ++EWR  
Sbjct: 254 GRTRDFTWVQALNVMFENHKLVITANRVNQWDETSDAFTIRYDGELITLPEDEQSEWREI 313

Query: 229 INDEREVVVERTDDTNSVRVTVSGLLEMDVKIRPIGAEENRTHNYQLPAGDAFAHLETQF 288
              ++++++ERTD+ NSVRV VS L++MD+++RPIG EENR HNYQLP  DAFAHLETQF
Sbjct: 314 SGQKKDIIIERTDERNSVRVLVSDLVQMDIRVRPIGKEENRVHNYQLPQDDAFAHLETQF 373

Query: 289 RFSNLSKLVEGVLGKTYRPDYVSHVKRGVPMPMMGGEDKYQTPSLYSPLCNFCRFQRQPG 348
           +F +LS+LVEGVLGKTYRPDYVS  K GVPMP++GGEDKYQTPSL+SP C  CRF+ Q  
Sbjct: 374 KFLDLSELVEGVLGKTYRPDYVSSAKTGVPMPVLGGEDKYQTPSLFSPTCRLCRFKPQEE 433

Query: 349 S 349
           S
Sbjct: 434 S 434

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15809990|gb|AAL06922.1| AT5g60530/muf9_180 [Arabidopsis thaliana]

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 208/301 (69%), Positives = 251/301 (83%), Gaps = 2/301 (0%)

Query: 51  ASTHYSLLTPLPSGQERAFCQARGACNMKTLVCPSQCPERKPRKNRKRKGCFIDCSSKCE 110
           A+  Y +L+PLP+GQE+A CQ RG+C  KTLVCP +CP+RKP KN+  KGCFIDC++KCE
Sbjct: 134 AAARYRILSPLPTGQEQAMCQGRGSCYYKTLVCPGECPKRKPTKNKNTKGCFIDCTNKCE 193

Query: 111 VTCKWRKPNCNGYGSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPQ 170
            TCKWRK NCNGYGSLCYDPRFVGGDGVMFYFHG+KGGNFAIVSD+NLQINAHFIGTRP 
Sbjct: 194 ATCKWRKTNCNGYGSLCYDPRFVGGDGVMFYFHGSKGGNFAIVSDNNLQINAHFIGTRPV 253

Query: 171 GRTRDFTWVQALAVMFDTHTLVIAANRVSHWNDDVDALTVRWDGQTVDVRTDGEAEWR-- 228
           GR RDFTWVQAL VMF+ H LVI ANRV+ W++  DA T+R+DG+ + +  D ++EWR  
Sbjct: 254 GRIRDFTWVQALNVMFENHKLVITANRVNQWDETSDAFTIRYDGELITLPEDEQSEWREI 313

Query: 229 INDEREVVVERTDDTNSVRVTVSGLLEMDVKIRPIGAEENRTHNYQLPAGDAFAHLETQF 288
              ++++++ERTD+ NSVRV VS L++MD+++RPIG EENR HNYQLP  DAFAHLETQF
Sbjct: 314 SGQKKDIIIERTDERNSVRVLVSDLVQMDIRVRPIGKEENRVHNYQLPQDDAFAHLETQF 373

Query: 289 RFSNLSKLVEGVLGKTYRPDYVSHVKRGVPMPMMGGEDKYQTPSLYSPLCNFCRFQRQPG 348
           +F +LS+LVEGVLGKTYRPDYVS  K GVPMP++GGEDKYQTPSL+SP C  CRF+ Q  
Sbjct: 374 KFLDLSELVEGVLGKTYRPDYVSSAKTGVPMPVLGGEDKYQTPSLFSPTCRLCRFKPQEE 433

Query: 349 S 349
           S
Sbjct: 434 S 434

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	357
TAIR|locus:2175193	338	AT5G60520 "AT5G60520" [Arabido	0.871	0.920	0.730	1.4e-128
TAIR|locus:2175198	439	AT5G60530 "AT5G60530" [Arabido	0.837	0.681	0.677	1.1e-117
TAIR|locus:2131714	341	AT4G27400 [Arabidopsis thalian	0.789	0.826	0.432	1.9e-67
TAIR|locus:2162555	337	AT5G54370 "AT5G54370" [Arabido	0.745	0.789	0.442	1.5e-65
TAIR|locus:2011010	347	AT1G54890 "AT1G54890" [Arabido	0.795	0.818	0.429	6.7e-65
TAIR|locus:2090674	559	AT3G19430 [Arabidopsis thalian	0.677	0.432	0.477	7.7e-64
TAIR|locus:2044410	125	AT2G19000 "AT2G19000" [Arabido	0.280	0.8	0.278	0.00015

TAIR|locus:2175193 AT5G60520 "AT5G60520" [Arabidopsis thaliana (taxid:3702)]

 Score = 1262 (449.3 bits), Expect = 1.4e-128, P = 1.4e-128
 Identities = 230/315 (73%), Positives = 264/315 (83%)

Query:    44 KKGAFDAASTHYSLLTPLPSGQERAFCQARGACNMKTLVCPSQCPEXXXXXXXXXXGCFI 103
             KKGA+DAAST+Y++L PL SGQER  C ARG+CN K L CP +CPE           CFI
Sbjct:    27 KKGAYDAASTNYNVLYPLGSGQERVQCLARGSCNQKILTCPKECPERKPKMNKKKKACFI 86

Query:   104 DCSSKCEVTCKWRKPNCNGYGSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDNLQINAH 163
             DCSSKCEVTCKWRK NCNGYGSLCYDPRFVGGDGVMFYFHG K GNFAIVSD+NLQINAH
Sbjct:    87 DCSSKCEVTCKWRKANCNGYGSLCYDPRFVGGDGVMFYFHGNKDGNFAIVSDENLQINAH 146

Query:   164 FIGTRPQGRTRDFTWVQALAVMFDTHTLVIAANRVSHWNDDVDALTVRWDGQTVDVRTDG 223
             FIGTRP GRTRDFTWVQA +VMFD+H LVIAA +V+ W+D VD+L VRW+G+ V+V T+G
Sbjct:   147 FIGTRPAGRTRDFTWVQAFSVMFDSHNLVIAAKKVASWDDSVDSLVVRWNGEEVEVPTEG 206

Query:   224 EAEWRIN-DEREVVVERTDDTNSVRVTVSGLLEMDVKIRPIGAEENRTHNYQLPAGDAFA 282
             EAEWRI+ DEREV+VERTD+ N+VRVTVSG++++D+++RPIG EE+R H YQLP  DAFA
Sbjct:   207 EAEWRIDLDEREVIVERTDERNNVRVTVSGIVQIDIQVRPIGKEEDRVHKYQLPKDDAFA 266

Query:   283 HLETQFRFSNLSKLVEGVLGKTYRPDYVSHVKRGVPMPMMGGEDKYQTPSLYSPLCNFCR 342
             HLETQF+F NLS LVEGVLGKTYRP YVS VK GVPMPMMGGEDKYQTPSL+SPLCN CR
Sbjct:   267 HLETQFKFFNLSDLVEGVLGKTYRPGYVSPVKTGVPMPMMGGEDKYQTPSLFSPLCNVCR 326

Query:   343 FQRQPGSAIEGVSQY 357
             FQ + G    GV++Y
Sbjct:   327 FQGKTGP---GVAKY 338

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2175198 AT5G60530 "AT5G60530" [Arabidopsis thaliana (taxid:3702)]

 Score = 1159 (413.0 bits), Expect = 1.1e-117, P = 1.1e-117
 Identities = 204/301 (67%), Positives = 247/301 (82%)

Query:    51 ASTHYSLLTPLPSGQERAFCQARGACNMKTLVCPSQCPEXXXXXXXXXXGCFIDCSSKCE 110
             A+  Y +L+PLP+GQE+A CQ RG+C  KTLVCP +CP+          GCFIDC++KCE
Sbjct:   134 AAARYRILSPLPTGQEQAMCQGRGSCYYKTLVCPGECPKRKPTKNKNTKGCFIDCTNKCE 193

Query:   111 VTCKWRKPNCNGYGSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPQ 170
              TCKWRK NCNGYGSLCYDPRFVGGDGVMFYFHG+KGGNFAIVSD+NLQINAHFIGTRP 
Sbjct:   194 ATCKWRKTNCNGYGSLCYDPRFVGGDGVMFYFHGSKGGNFAIVSDNNLQINAHFIGTRPV 253

Query:   171 GRTRDFTWVQALAVMFDTHTLVIAANRVSHWNDDVDALTVRWDGQTVDVRTDGEAEWR-I 229
             GRTRDFTWVQAL VMF+ H LVI ANRV+ W++  DA T+R+DG+ + +  D ++EWR I
Sbjct:   254 GRTRDFTWVQALNVMFENHKLVITANRVNQWDETSDAFTIRYDGELITLPEDEQSEWREI 313

Query:   230 NDER-EVVVERTDDTNSVRVTVSGLLEMDVKIRPIGAEENRTHNYQLPAGDAFAHLETQF 288
             + ++ ++++ERTD+ NSVRV VS L++MD+++RPIG EENR HNYQLP  DAFAHLETQF
Sbjct:   314 SGQKKDIIIERTDERNSVRVLVSDLVQMDIRVRPIGKEENRVHNYQLPQDDAFAHLETQF 373

Query:   289 RFSNLSKLVEGVLGKTYRPDYVSHVKRGVPMPMMGGEDKYQTPSLYSPLCNFCRFQRQPG 348
             +F +LS+LVEGVLGKTYRPDYVS  K GVPMP++GGEDKYQTPSL+SP C  CRF+ Q  
Sbjct:   374 KFLDLSELVEGVLGKTYRPDYVSSAKTGVPMPVLGGEDKYQTPSLFSPTCRLCRFKPQEE 433

Query:   349 S 349
             S
Sbjct:   434 S 434

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0000041 "transition metal ion transport" evidence=RCA

TAIR|locus:2131714 AT4G27400 [Arabidopsis thaliana (taxid:3702)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 124/287 (43%), Positives = 178/287 (62%)

Query:    67 RAFC--QARGACNMKTLVCPSQCPEXXXXXXXXXXGCFIDCSSK-CEVTCKWRKPNCNGY 123
             + +C   A   C ++ + CP +CP            C++DC    CE  C+  KPNC  Y
Sbjct:    28 QTYCGGNATPRCQLRYIDCPEECPTEMFPNSQNKI-CWVDCFKPLCEAVCRAVKPNCESY 86

Query:   124 GSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPQGRTRDFTWVQALA 183
             GS+C DPRF+GGDG++FYFHG    +F+IVSD + QINA F G RP GRTRDFTW+QAL 
Sbjct:    87 GSICLDPRFIGGDGIVFYFHGKSNEHFSIVSDPDFQINARFTGHRPAGRTRDFTWIQALG 146

Query:   184 VMFDTHTLVIAANRVSHWNDDVDALTVRWDGQTVDVRTDGEAEWRINDEREVVVERTDDT 243
              +F++H   +   +V+ W+ ++D L    DGQ + +  +  + W  +D +++ +ER  + 
Sbjct:   147 FLFNSHKFSLETTKVATWDSNLDHLKFTIDGQDLIIPQETLSTWYSSD-KDIKIERLTEK 205

Query:   244 NSVRVTVSGLLEMDVKIRPIGAEENRTHNYQLPAGDAFAHLETQFRFSNLSKLVEGVLGK 303
             NSV VT+    E+ V + P+  E++R HNY+LP  D FAH E QF+F NLS  V+G+LG+
Sbjct:   206 NSVIVTIKDKAEIMVNVVPVTKEDDRIHNYKLPVDDCFAHFEVQFKFINLSPKVDGILGR 265

Query:   304 TYRPDYVSHVKRGVPMPMMGGEDKYQTPSLYSPLCNFCRFQRQPGSA 350
             TYRPD+ +  K GV MP++GGED ++T SL S +C  C F   P  A
Sbjct:   266 TYRPDFKNPAKPGVVMPVVGGEDSFRTSSLLSHVCKTCLFSEDPAVA 312

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2162555 AT5G54370 "AT5G54370" [Arabidopsis thaliana (taxid:3702)]

 Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
 Identities = 119/269 (44%), Positives = 171/269 (63%)

Query:    76 CNMKTLVCPSQCPEXXXXXXXXXXGCFIDCSSK-CEVTCKWRKPNCNGYGSLCYDPRFVG 134
             C  K + CP +CP            C+ DC    C+  C+ RKPNCN  GS CYDPRF+G
Sbjct:    36 CYRKYIRCPEECPSKTAMNSKNKV-CYADCDRPTCKSQCRMRKPNCNRPGSACYDPRFIG 94

Query:   135 GDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPQGRTRDFTWVQALAVMFDTHTLVIA 194
             GDG++FYFHG     F++VSD +LQIN  FIG RP GR RDFTW+QAL  +F+++   + 
Sbjct:    95 GDGIVFYFHGKSNEEFSLVSDSDLQINGRFIGHRPAGRARDFTWIQALGFLFNSNKFSLE 154

Query:   195 ANRVSHWNDDVDALTVRWDGQTVDVRTDGEAEWRINDEREVVVERTDDTNSVRVTVSGLL 254
             A + + W++++D L   +DGQ + V  +  + W  +  +++ +ER    NSV VT+    
Sbjct:   155 AAKTASWDNEIDHLKFSYDGQDLSVPEETLSTW-YSPNKDIKIERVSMRNSVIVTIKDKA 213

Query:   255 EMDVKIRPIGAEENRTHNYQLPAGDAFAHLETQFRFSNLSKLVEGVLGKTYRPDYVSHVK 314
             E+ + + P+  E++R H+Y++P+ D FAHLE QFRF NLS  V+G+LG+TYRPD+ +  K
Sbjct:   214 EIMINVVPVTKEDDRIHSYKVPSDDCFAHLEVQFRFFNLSPKVDGILGRTYRPDFQNPAK 273

Query:   315 RGVPMPMMGGEDKYQTPSLYSPLCNFCRF 343
              GV MP++GGED ++T SL S  C  C F
Sbjct:   274 PGVAMPVVGGEDSFKTSSLLSNDCKTCIF 302

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2011010 AT1G54890 "AT1G54890" [Arabidopsis thaliana (taxid:3702)]

 Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
 Identities = 124/289 (42%), Positives = 175/289 (60%)

Query:    57 LLTPLPSGQERAFC-QARGACNMKTLVCPSQCPEXXXXXXXXXXGCFIDCSSK-CEVTCK 114
             ++  L +  E   C Q +  C +K   CP QCP            C IDC +  C+ TC+
Sbjct:    22 VVVQLEAALETKTCFQRKSPCFLKKQTCPKQCPSFSPPNGSTKA-CVIDCFNPICKATCR 80

Query:   115 WRKPNCNGYGSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPQGRTR 174
              RKPNCNG GS C DPRF+GGDG++FYFHG +  +FA++SD + Q+NA FIG RP GR R
Sbjct:    81 NRKPNCNGKGSACLDPRFIGGDGIVFYFHGKRDEHFALISDVDFQVNARFIGLRPNGRAR 140

Query:   175 DFTWVQALAVMF--DTHTLVIAANRVSHWNDDVDALTVRWDGQTVDVRTDGEAEWRINDE 232
             DFTW+Q+L ++F  ++ T  + A +   W+  VD L + ++G+ + +     + W     
Sbjct:   141 DFTWIQSLGLIFGPNSKTFSLEATKAEKWDHQVDHLRLSYEGKEISLPKGDTSVWSPPLG 200

Query:   233 REVVVERTDDTNSVRVTVSGLLEMDVKIRPIGAEENRTHNYQLPAGDAFAHLETQFRFSN 292
               + +ERT D NSV VT+  + E+ + + P+  E++  H Y +P  D FAHLE QFRF  
Sbjct:   201 DYIKIERTSDINSVLVTLQDIAEIWINVVPVTKEDDIIHKYGIPEDDCFAHLEVQFRFLK 260

Query:   293 LSKLVEGVLGKTYRPDYVSHVKRGVPMPMMGGEDKYQTPSLYSPLCNFC 341
             LS  VEGVLG+TY+ D+ +  K GV MP++GGEDKY+T SL    CN C
Sbjct:   261 LSSNVEGVLGRTYKEDFKNPAKPGVAMPVVGGEDKYRTASLLETSCNAC 309

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090674 AT3G19430 [Arabidopsis thaliana (taxid:3702)]

 Score = 621 (223.7 bits), Expect = 7.7e-64, Sum P(2) = 7.7e-64
 Identities = 119/249 (47%), Positives = 164/249 (65%)

Query:   101 CFIDCSSKCEVTCKWRKP--NCNGYGSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDNL 158
             C  DC   C+V C   KP  NC+  GS+C DPRF+GGDG+ FYFHG K  NF ++SD NL
Sbjct:   279 CPADCPRSCQVDCVTCKPVCNCDKPGSVCQDPRFIGGDGLTFYFHGKKDSNFCLISDPNL 338

Query:   159 QINAHFIGTRPQGRTRDFTWVQALAVMFDTHTLVIAANRVSHWNDDVDALTVRWDGQTVD 218
              INAHFIG R  G  RDFTWVQ++A++F TH L + A + + W+D VD + V +DG  + 
Sbjct:   339 HINAHFIGKRRAGMARDFTWVQSIAILFGTHRLYVGALKTATWDDSVDRIAVSFDGNVIS 398

Query:   219 V-RTDGEAEWRINDE--REVVVERTD-DTNSVRVTVSGLLEMDVKIRPIGAEENRTHNYQ 274
             + + DG A W  +     EV V+R + DTN++ V V GLL++  ++ PI  E++R H Y 
Sbjct:   399 LPQLDG-ARWTSSPGVYPEVSVKRVNTDTNNLEVEVEGLLKITARVVPITMEDSRIHGYD 457

Query:   275 LPAGDAFAHLETQFRFSNLSKLVEGVLGKTYRPDYVSHVKRGVPMPMMGGEDKYQTPSLY 334
             +   D  AHL+  F+F +LS  V+GVLG+TYR +YVS VK GV MP+MGG+ ++QT  L+
Sbjct:   458 VKEDDCLAHLDLGFKFQDLSDNVDGVLGQTYRSNYVSRVKIGVHMPVMGGDREFQTTGLF 517

Query:   335 SPLCNFCRF 343
             +P C+  RF
Sbjct:   518 APDCSAARF 526

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2044410 AT2G19000 "AT2G19000" [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 0.00015, P = 0.00015
 Identities = 34/122 (27%), Positives = 50/122 (40%)

Query:    10 VLVAFMLAFISMEASFVQGQGGANL-DSHNNKNNGKKGAFDAASTHYSLLTPLPSGQERA 68
             +L+ F+L  I + AS    Q    L DS  ++  G K  F    + +S  +    G   +
Sbjct:     6 ILLPFLLVIIFVSAS----QASRQLWDSGISEMFGSKSGFHHGFSGFSGSSGGAGGAGGS 61

Query:    69 F-----------CQARGACNMKTLVCPSQCPEXXXX------XXXXXXGCFIDCSSKCEV 111
             F           C A+GAC+ K L CP +C +                GC  DC++KC  
Sbjct:    62 FGDMMNAGGAHTCSAQGACSGKKLTCPEECYKSTNVNKDGYKSTSRSGGCSFDCTTKCAA 121

Query:   112 TC 113
             TC
Sbjct:   122 TC 123


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.426    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      357       347   0.00098  116 3  11 22  0.38    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  619 (66 KB)
  Total size of DFA:  265 KB (2140 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.36u 0.12s 26.48t   Elapsed:  00:00:01
  Total cpu time:  26.36u 0.12s 26.48t   Elapsed:  00:00:01
  Start:  Fri May 10 07:08:42 2013   End:  Fri May 10 07:08:43 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_IX001432 hypothetical protein (343 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	357
pfam06830	57	pfam06830, Root_cap, Root cap	4e-26

>gnl|CDD|191617 pfam06830, Root_cap, Root cap

 Score = 98.5 bits (246), Expect = 4e-26
 Identities = 35/57 (61%), Positives = 41/57 (71%)

Query: 287 QFRFSNLSKLVEGVLGKTYRPDYVSHVKRGVPMPMMGGEDKYQTPSLYSPLCNFCRF 343
            F+F +LS  V GVLG+TYRPDYV+ VK G  MP+MGGEDKY T SL+S  C   RF
Sbjct: 1   GFKFYDLSDDVHGVLGQTYRPDYVNPVKVGASMPVMGGEDKYATSSLFSADCAVARF 57

The cells at the periphery of the root cap are continuously sloughed off from the root into the mucilage, and are thought to be programmed to die.This family represents a conserved region approximately 60 residues in length within plant root cap proteins, which may be involved in the process. Length = 57

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	357
PF06830	57	Root_cap: Root cap; InterPro: IPR009646 The cells	100.0
PF06668	188	ITI_HC_C: Inter-alpha-trypsin inhibitor heavy chai	98.65
smart00216	162	VWD von Willebrand factor (vWF) type D domain. Von	97.49
PF00094	159	VWD: von Willebrand factor type D domain; InterPro	96.58
cd01951	223	lectin_L-type legume lectins. The L-type (legume-t	89.86

>PF06830 Root_cap: Root cap; InterPro: IPR009646 The cells at the periphery of the root cap are continuously sloughed off from the root into the mucilage, and are thought to be programmed to die []

Probab=100.00  E-value=5.6e-37  Score=232.59  Aligned_cols=57  Identities=65%  Similarity=1.158  Sum_probs=56.5

Q ss_pred             ceeEeccccccccccceeecCCccccccCCcccccccCCCccccCCcccCCCCceee
Q 039053          287 QFRFSNLSKLVEGVLGKTYRPDYVSHVKRGVPMPMMGGEDKYQTPSLYSPLCNFCRF  343 (357)
Q Consensus       287 ~FKF~~Ltd~V~GVLGQTYRpdyvn~vk~gv~MPvmGGe~kY~TSsLFsaDC~v~rF  343 (357)
                      ||||++|||+|||||||||||||+|++|+||+|||||||++|+|||||||||++|||
T Consensus         1 ~FkF~~Lt~~V~GVLGQTYr~~yvn~vk~g~~MPvmGG~~~y~ts~lfs~DC~v~rF   57 (57)
T PF06830_consen    1 QFKFYSLTDDVHGVLGQTYRPDYVNPVKVGVAMPVMGGEDKYRTSSLFSTDCAVCRF   57 (57)
T ss_pred             CceeeccccccceeccccccCCcccccccCCCCccccCCccceeccccccCcchhcC
Confidence            799999999999999999999999999999999999999999999999999999998

This family represents a conserved region approximately 60 residues in length within plant root cap proteins, which may be involved in the process.

>PF06668 ITI_HC_C: Inter-alpha-trypsin inhibitor heavy chain C-terminus; InterPro: IPR010600 This entry represents the C-terminal region of inter-alpha-trypsin inhibitor heavy chains

Probab=98.65  E-value=4.5e-07  Score=82.57  Aligned_cols=132  Identities=17%  Similarity=0.277  Sum_probs=88.3

Q ss_pred             CCCceeeeEEeecCCC-CCCCCceeeeeeeeeeCCceEEEEeee--ccCCCccCceEEEEECCeEeeecCCCCCeeeeCC
Q 039053          155 DDNLQINAHFIGTRPQ-GRTRDFTWVQALAVMFDTHTLVIAANR--VSHWNDDVDALTVRWDGQTVDVRTDGEAEWRIND  231 (357)
Q Consensus       155 D~~LhINAHFIG~R~~-g~~RDfTWIQALgI~F~~H~l~igA~k--~~~Wdd~vD~l~v~~dG~~v~ip~~~~a~W~s~~  231 (357)
                      |..+.+|.+.||..++ +..+-=|....|||.|+.-.+.|+.+.  ..-+ +..+++.++|+..-..            .
T Consensus         1 ~sGi~VnGqliGak~~~~~~~~~TYF~~i~I~~~~~~~~I~vt~~~I~l~-~g~~~~~l~w~~t~~~------------~   67 (188)
T PF06668_consen    1 DSGITVNGQLIGAKKPPGEKKLRTYFGRIGITFQKPDVKIEVTPEKITLT-DGRRRSVLSWSDTASV------------K   67 (188)
T ss_pred             CCCEEEeCEEccCCCCCCCCCCCceEEEEEEEECCCCeEEEEEccEEEEe-cCCCceeEeEcceEEE------------c
Confidence            6789999999998653 378888999999999987766666653  2222 2233334444332221            2


Q ss_pred             CCceEEEEecCCCeEEEEEcceEEEEEEEEecccCCCcccccCCCCCCccccccccee-EeccccccccccceeecC-Cc
Q 039053          232 EREVVVERTDDTNSVRVTVSGLLEMDVKIRPIGAEENRTHNYQLPAGDAFAHLETQFR-FSNLSKLVEGVLGKTYRP-DY  309 (357)
Q Consensus       232 ~~~l~V~Rt~~~N~V~V~l~gv~~i~a~VVPIt~edsRiHnYgvt~dD~fAHLel~FK-F~~Ltd~V~GVLGQTYRp-dy  309 (357)
                      .|+|.|+=. ..-.|.|++.+-+++.+-.-.+.+          +.+.-.-||.+.-- =..||++|||+|||-|++ +|
T Consensus        68 ~~~l~v~v~-k~~~l~v~~~~~v~F~Il~Hr~~~----------~~~~~~d~LGfYi~ds~~lS~~vhGLLGQF~~~~~~  136 (188)
T PF06668_consen   68 QPGLEVSVN-KNKNLTVTLGDGVTFVILLHRVWK----------KHPYQRDFLGFYILDSHGLSPSVHGLLGQFYHEPDF  136 (188)
T ss_pred             cCcEEEEEE-CCceEEEEeCCceEEEEEEEeecC----------CCCCCCCeeEEEecCCCCCCCcccccccCccCCCce
Confidence            356777633 335699999999999986554433          33333346654332 268999999999999999 66


Q ss_pred             c
Q 039053          310 V  310 (357)
Q Consensus       310 v  310 (357)
                      .
T Consensus       137 ~  137 (188)
T PF06668_consen  137 E  137 (188)
T ss_pred             E
Confidence            4

Inter-alpha-trypsin inhibitors are glycoproteins with a high inhibitory activity against trypsin, built up from different combinations of four polypeptides: bikunin and the three heavy chains that belong to this family (HC1, HC2, HC3). The heavy chains do not have any protease inhibitory properties but have the capacity to interact in vitro and in vivo with hyaluronic acid, which promotes the stability of the extra-cellular matrix. This domain is associated with the VWA domain IPR002035 from INTERPRO.; GO: 0004867 serine-type endopeptidase inhibitor activity, 0030212 hyaluronan metabolic process

>smart00216 VWD von Willebrand factor (vWF) type D domain

Probab=97.49  E-value=0.0041  Score=52.52  Aligned_cols=81  Identities=20%  Similarity=0.324  Sum_probs=64.1

Q ss_pred             CcccCCeeeecCCceEEeeccCCCceEEeeC-C---CceeeeEEeecCCCCCCCCceeeeeeeeeeCCceEEEEeeeccC
Q 039053          125 SLCYDPRFVGGDGVMFYFHGAKGGNFAIVSD-D---NLQINAHFIGTRPQGRTRDFTWVQALAVMFDTHTLVIAANRVSH  200 (357)
Q Consensus       125 s~C~DPRFiGGDG~~FYFHGkkd~dFclVSD-~---~LhINAHFIG~R~~g~~RDfTWIQALgI~F~~H~l~igA~k~~~  200 (357)
                      ++-+||++.==||.+|.|+|  +-.|.|+.| .   +|.|-++.-...    . +-+|..++-|..+++.+.+...    
T Consensus        13 ~v~g~~~~~TFDg~~y~~~g--~C~yvL~~~~~~~~~f~V~~~~~~~~----~-~~~~~~~v~v~~~~~~i~~~~~----   81 (162)
T smart00216       13 SVSGDPHYTTFDGVAYTFPG--NCYYVLAQDCSSEPTFSVLLKNVPCG----G-GATCLKSVKVELNGDEIELKDD----   81 (162)
T ss_pred             EEcCCCCeECcCCCEEeecC--ceEEEEEEECCCCCCEEEEEEecCCC----C-CceEEEEEEEEECCEEEEEEeC----
Confidence            37889999999999999966  668999988 3   666666655332    1 2689999999999988777631    


Q ss_pred             CCccCceEEEEECCeEeeecCC
Q 039053          201 WNDDVDALTVRWDGQTVDVRTD  222 (357)
Q Consensus       201 Wdd~vD~l~v~~dG~~v~ip~~  222 (357)
                            .++|.+||+++.+|..
T Consensus        82 ------~~~v~vng~~v~~p~~   97 (162)
T smart00216       82 ------NGTVTVNGQQVSLPYK   97 (162)
T ss_pred             ------CCEEEECCEEeeCCcC
Confidence                  6899999999999874

Von Willebrand factor contains several type D domains: D1 and D2 are present within the N-terminal propeptide whereas the remaining D domains are required for multimerisation.

>PF00094 VWD: von Willebrand factor type D domain; InterPro: IPR001846 A family of growth regulators (originally called cef10, connective tissue growth factor, fisp-12, cyr61, or, alternatively, beta IG-M1 and beta IG-M2), all belong to immediate-early genes expressed after induction by growth factors or certain oncogenes

Probab=96.58  E-value=0.038  Score=45.37  Aligned_cols=109  Identities=17%  Similarity=0.218  Sum_probs=71.9

Q ss_pred             cccCCeeeecCCceEEeeccCCCceE--EeeCCC----ceeeeEEeecCCCCCCCCceeeeeeeeeeCCceEEEEeeecc
Q 039053          126 LCYDPRFVGGDGVMFYFHGAKGGNFA--IVSDDN----LQINAHFIGTRPQGRTRDFTWVQALAVMFDTHTLVIAANRVS  199 (357)
Q Consensus       126 ~C~DPRFiGGDG~~FYFHGkkd~dFc--lVSD~~----LhINAHFIG~R~~g~~RDfTWIQALgI~F~~H~l~igA~k~~  199 (357)
                      +=+||+|+==||..|.|+|  +..|-  |+.|..    +++.++..  +.+.....-+++.+|.|.+++|.+.|....  
T Consensus         3 v~g~~~~~TFDg~~y~~~~--~c~y~~vl~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~v~i~~~~~~i~i~~~~--   76 (159)
T PF00094_consen    3 VYGDPHITTFDGKSYSFPG--NCTYILVLAQDCSSDPKFSFSVENK--NCPCGQSGTSCTRKVTIRLGNHEIEIKPNN--   76 (159)
T ss_pred             EeCCCeEEcCCCCEEecCC--CceEEEEeecccCccccccccceee--eeccCCCCcceeeEEEEEcccceeeEeccc--
Confidence            3478999999999999999  66788  776632    45555432  112222233499999999999988886543  


Q ss_pred             CCCccCceEEEEECCeEeeecCCCCCeeeeCCCCceEEEEecCCCeEEEEEcceEEEE
Q 039053          200 HWNDDVDALTVRWDGQTVDVRTDGEAEWRINDEREVVVERTDDTNSVRVTVSGLLEMD  257 (357)
Q Consensus       200 ~Wdd~vD~l~v~~dG~~v~ip~~~~a~W~s~~~~~l~V~Rt~~~N~V~V~l~gv~~i~  257 (357)
                             ...+.+||+++.+|.      .   ..+..|+++. ...+.|....-++|.
T Consensus        77 -------~~~v~vng~~~~~p~------~---~~~~~i~~~~-~~~~~v~~~~~~~v~  117 (159)
T PF00094_consen   77 -------GDQVTVNGQPVSLPY------W---SSGGSIERYS-GGFVVVVFSSGVRVQ  117 (159)
T ss_pred             -------cceEEEeeecccCcc------c---cCcceEEeec-cccEEEEEecCCeEE
Confidence                   788999999999843      2   1233666664 233444444444443

Sequence analysis of this family revealed the presence of four distinct modules. Each module has homologues in other extracellular mosaic proteins such as Von Willebrand factor, slit, thrombospondins, fibrillar collagens, IGF-binding proteins and mucins. Classification and analysis of these modules suggests the location of binding regions and, by analogy to better characterised modules in other proteins, sheds some light onto the structure of this new family []. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. One of the functions of von Willebrand factor (vWF) is to serve as a carrier of clotting factor VIII (FVIII). The native conformation of the D' domain of vWF is not only required for factor VIII (FVIII) binding but also for normal multimerisation and optimal secretion. The interaction between blood clotting factor VIII and VWF is necessary for normal survival of blood clotting factor VIII in blood circulation. The VWFD domain is a highly structured region, in which the first conserved Cys has been found to form a disulphide bridge with the second conserved one [].

>cd01951 lectin_L-type legume lectins

Probab=89.86  E-value=4.5  Score=36.44  Aligned_cols=96  Identities=17%  Similarity=0.201  Sum_probs=58.7

Q ss_pred             eecCCceEEeeccCCCceEEeeCCCceeeeEEeecCCCCCCCCceeeeeeeeeeCCceEEEEeeeccCCCccCceEEEEE
Q 039053          133 VGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPQGRTRDFTWVQALAVMFDTHTLVIAANRVSHWNDDVDALTVRW  212 (357)
Q Consensus       133 iGGDG~~FYFHGkkd~dFclVSD~~LhINAHFIG~R~~g~~RDfTWIQALgI~F~~H~l~igA~k~~~Wdd~vD~l~v~~  212 (357)
                      .||||..|.||......-.. +..            ..++.-..- -+.|+|-||+|+=      ...||.+.+|+.|.+
T Consensus        70 ~~gdG~aF~l~~~~~~~~~~-~g~------------~~~lG~~~~-~~~~aVefDT~~N------~~~~dp~~~higi~~  129 (223)
T cd01951          70 NGADGIAFVLQNDPAGALGG-GGG------------GGGLGYGGI-GNSVAVEFDTYKN------DDNNDPNGNHISIDV  129 (223)
T ss_pred             CCCCcEEEEEecCCCCcccc-CCC------------CCccCcccc-CCeEEEEEecccc------CCCCCCCCCEEEEEc
Confidence            58999999999765322111 100            011111111 2588999998731      223888999999999


Q ss_pred             CCeEee-----------ecCCCC-CeeeeCCCCceEEEEecCCCeEEEEEcce
Q 039053          213 DGQTVD-----------VRTDGE-AEWRINDEREVVVERTDDTNSVRVTVSGL  253 (357)
Q Consensus       213 dG~~v~-----------ip~~~~-a~W~s~~~~~l~V~Rt~~~N~V~V~l~gv  253 (357)
                      +|..-.           ++.... .+|.     .+.|+.....+.+.|+|.+.
T Consensus       130 n~~~~~~~~~~~~~~~~~~~~~~~g~~~-----~v~I~Y~~~~~~L~v~l~~~  177 (223)
T cd01951         130 NGNGNNTALATSLGSASLPNGTGLGNEH-----TVRITYDPTTNTLTVYLDNG  177 (223)
T ss_pred             CCCCCCcccccccceeeCCCccCCCCEE-----EEEEEEeCCCCEEEEEECCC
Confidence            988522           111111 2233     48888888889999999875

The L-type (legume-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. This family includes arcelin, concanavalinA, the lectin-like receptor kinases, the ERGIC-53/VIP36/EMP46 type1 transmembrane proteins, and an alpha-amylase inhibitor. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	357
d2d3sa1	237	Legume lectin {Winged bean (Psophocarpus tetragono	82.8

>d2d3sa1 b.29.1.1 (A:1-237) Legume lectin {Winged bean (Psophocarpus tetragonolobus), basic agglutinin [TaxId: 3891]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Legume lectins
domain: Legume lectin
species: Winged bean (Psophocarpus tetragonolobus), basic agglutinin [TaxId: 3891]

Probab=82.80  E-value=2.1  Score=36.25  Aligned_cols=97  Identities=19%  Similarity=0.293  Sum_probs=57.7

Q ss_pred             cCCeeeecCCceEEeeccCCCceEEeeCCCceeee--EEeecCCCCCCCCceeeeeeeeeeCCceEEEEeeeccCCCccC
Q 039053          128 YDPRFVGGDGVMFYFHGAKGGNFAIVSDDNLQINA--HFIGTRPQGRTRDFTWVQALAVMFDTHTLVIAANRVSHWNDDV  205 (357)
Q Consensus       128 ~DPRFiGGDG~~FYFHGkkd~dFclVSD~~LhINA--HFIG~R~~g~~RDfTWIQALgI~F~~H~l~igA~k~~~Wdd~v  205 (357)
                      ..|.-.||||..|.+...           +.-+++  -+.|.-+.+..     -++++|-||+++        ..||.+-
T Consensus        79 ~~~~~~g~dGlaFvl~p~-----------~~~~~~~gg~lG~~~~~~~-----~~~vaVEFDT~~--------n~~d~~~  134 (237)
T d2d3sa1          79 PFPRPHPADGLVFFIAPP-----------NTQTGEGGGYFGIYNPLSP-----YPFVAVEFDTFR--------NTWDPQI  134 (237)
T ss_dssp             SCCSSCCCEEEEEEEECS-----------SCCCCBCGGGTTTBCTTSC-----CCCEEEEEECSC--------CTTCCSS
T ss_pred             CCCCCCCCCeEEEEeCCC-----------CccCCccccccccccCCCc-----CceEEEEEEeec--------CCCCCCC
Confidence            344556899999988632           111221  11222222211     267999999976        3589999


Q ss_pred             ceEEEEECCeEeeecCCCCCeeeeC--CCCceEEEEecCCCeEEEEEcc
Q 039053          206 DALTVRWDGQTVDVRTDGEAEWRIN--DEREVVVERTDDTNSVRVTVSG  252 (357)
Q Consensus       206 D~l~v~~dG~~v~ip~~~~a~W~s~--~~~~l~V~Rt~~~N~V~V~l~g  252 (357)
                      +|+-|-+|+..-.    ....|...  ..-.+.|+..+.++.+.|+|..
T Consensus       135 nHvgI~vns~~s~----~~~~~~l~~G~~~~v~I~Yd~~~~~L~V~l~~  179 (237)
T d2d3sa1         135 PHIGIDVNSVIST----KTVPFTLDNGGIANVVIKYDASTKILHVVLVF  179 (237)
T ss_dssp             SEEEEEESSSSCS----EEEECCCCTTCEEEEEEEEETTTTEEEEEEEE
T ss_pred             CcEEEEcCCCccc----cccceeecCCCEEEEEEEEECCCCEEEEEEEc
Confidence            9999999884211    11112111  1124788888888888888753