Citrus Sinensis ID: 039070

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
Protein Sequence
MGHNCCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHNLISPTSCAQIYTNSTYSNACNKLPHQVQLSNSPVFLADSHMKEIIKSPHLTSPFNNVSSLDLINTTQYSISPSILHEISSLLPASEYQNPNQFWTLPEQNPHASSMESANPCGFGLIDENNGLLGGSCFEITETDAGKETMLQPLMIDAQQEKVCEVGNGKITNELNDNGQNMNALFERADFDFDDHLVESTALSCGMYCNFSPIMNQFAWD
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHHHHHHcccccccHccHHcccHccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHcccccHHHHcccccccccccccHHcccccccccccccccccccHccccccccHHcHHHcccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccHHHHHHHHHHHEEcccccccccEccccccccccEccccccccccHEEcEccccccEcccccHHHHHccc
Coil and Loop (DISEMBL)
mghnccskqkvkrglwspeedEKLIKHVTthghgswssvpklaglqrcgksCRLRWINylrpdlkrgsfteqeERIIIDIHRILGNRWAQIAkhlpgrtdneVKNFWNSCIKKKLiargidpnthnlisptscaqiytnstysnacnklphqvqlsnspvfladshmkeiiksphltspfnnvssldlinttqysispSILHEIssllpaseyqnpnqfwtlpeqnphassmesanpcgfglidenngllggscfeitetdagketmlqplmiDAQQEKVCEVGNGKITNELNDNGQNMNALFeradfdfddhlVESTAlscgmycnfspimnqfawd
Flexible Loop (DISEMBL)
mghnccskqkvkrglwspeEDEKLIKHVTthghgswssvpklaGLQRCGKSCRLRWINylrpdlkrgsfteqEERIIIDIHRILGNRWAQIAKHlpgrtdnevkNFWNSCIKKKLIARGIDPNTHNLISPTSCAQIYTNSTYSNACNKLPHQVQLSNSPVFLADSHMKEIIKSPHLTSPFNNVSSLDLINTTQYSISPSILHEISSLLPASEYQNPNQFWTLPEQNPHASSMESANPCGFGLIDENNGLLGGSCFEITETDAGKETMLQPLMIDAQQEKVCEVGNGKITNELNDNGQNMNALFERADFDFDDHLVESTALSCGMYCNFSPIMNQFAWD
Low Complexity Region (SEG)
MGHNCCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHNLISPTSCAQIYTNSTYSNACNKLPHQVQLSNSPVFLADSHMKEIIKSPHLTSPFNNVSSLDLINTTQYSISPSILHEISSLLPASEYQNPNQFWTLPEQNPHASSMESANPCGFGLIDENNGLLGGSCFEITETDAGKETMLQPLMIDAQQEKVCEVGNGKITNELNDNGQNMNALFERADFDFDDHLVESTALSCGMYCNFSPIMNQFAWD
Disordered region (IsUnstruct)
***********************LIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHNLISPTSCAQIYTNSTYSNACNKLPHQVQLSNSPVFLADSHMKEIIKSPHLTSPFNNVSSLDLINTTQYSISPSILHEISSLLPA********FW*****************CGFGLIDENNGLLGGSCFEITETDAGKETMLQPLMIDAQQEKVCEVGNGKITNELNDNGQNMNALFERADFDFDDHLVESTALSCGMYCNFSPIMNQFA**
Disordered Region (DISOPRED)
*GHNCCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARG**************************************************************************************************************************************************************************************LFERADFDFDDHLVESTALSCGMYCNFSPIMNQFAWD
Disordered Region (DISEMBL)
***************WSPEEDEKLIKH**********SVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHNLISPTSCAQIYTNSTYSNACNKLPHQVQLSNSPVFLADSHMKEIIKSPHLTSPFNNVSSLDLINTTQYSISPSILHEISSLLPASEYQNPNQFWTLPEQ********SANPCGFGLIDENNGLLGGSCFEITETDAGKETMLQPLMIDAQQEKVCEVGNGKITNELNDNGQNMNALFERADFDFDDHLVESTALSCGMYCNFSPIMNQFAWD
Disordered Region (DISPRO)
***NCCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHNLIS********************************************************************************A*******QFWTLPEQNPHASSMESANPCGFGLIDENNGLLGGSCFEITETDAGKETMLQPLMIDAQQEKVCEVGNGKITNELNDNGQNMNALFERADFDFDDHLVESTALSCGMYCNFSPIMNQFAWD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGHNCCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHNLISPTSCAQIYTNSTYSNACNKLPHQVQLSNSPVFLADSHMKEIIKSPHLTSPFNNVSSLDLINTTQYSISPSILHEISSLLPASEYQNPNQFWTLPEQNPHASSMESANPCGFGLIDENNGLLGGSCFEITETDAGKETMLQPLMIDAQQEKVCEVGNGKITNELNDNGQNMNALFERADFDFDDHLVESTALSCGMYCNFSPIMNQFAWD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	338	2.2.26 [Sep-21-2011]
Q8LPH6	352	Transcription factor MYB8	no	no	0.369	0.355	0.753	3e-56
P20027	302	Myb-related protein Hv33	N/A	no	0.346	0.387	0.752	5e-50
P81393	232	Myb-related protein 308 O	N/A	no	0.473	0.689	0.526	2e-46
Q9SZP1	282	Transcription repressor M	no	no	0.399	0.478	0.595	3e-46
Q9S9K9	257	Transcription factor MYB3	no	no	0.387	0.509	0.598	5e-46
P80073	421	Myb-related protein Pp2 O	N/A	no	0.369	0.296	0.619	1e-45
O49608	274	Transcription factor MYB3	no	no	0.417	0.514	0.570	2e-45
P81395	274	Myb-related protein 330 O	N/A	no	0.369	0.456	0.634	2e-45
Q38851	236	Transcription repressor M	no	no	0.402	0.576	0.582	1e-44
P20025	255	Myb-related protein Zm38	N/A	no	0.411	0.545	0.562	3e-44

>sp|Q8LPH6|MYB86_ARATH Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1

 Score =  219 bits (558), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 95/126 (75%), Positives = 112/126 (88%), Gaps = 1/126 (0%)

Query: 1   MG-HNCCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59
           MG H+CC KQK+++GLWSPEEDEKL+ ++T HGHG WSSVPKLAGLQRCGKSCRLRWINY
Sbjct: 1   MGRHSCCFKQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINY 60

Query: 60  LRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARG 119
           LRPDLKRG+F++ EE +II++H  LGNRW+QIA  LPGRTDNE+KNFWNSC+KKKL  +G
Sbjct: 61  LRPDLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKLRRKG 120

Query: 120 IDPNTH 125
           IDP TH
Sbjct: 121 IDPTTH 126

Probable transcription factor.
Arabidopsis thaliana (taxid: 3702)

>sp|P20027|MYB3_HORVU Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB2 PE=2 SV=3

 Score =  198 bits (504), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 88/117 (75%), Positives = 100/117 (85%)

Query: 10  KVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSF 69
           KV++GLWSPEEDEKL  H+  HG G WSSVP+LA L RCGKSCRLRWINYLRPDLKRG F
Sbjct: 13  KVRKGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRGCF 72

Query: 70  TEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHN 126
           ++QEE  I+ +H+ILGNRW+QIA HLPGRTDNE+KNFWNSCIKKKL  +GIDP TH 
Sbjct: 73  SQQEEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNSCIKKKLRQQGIDPATHK 129

Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.

Hordeum vulgare (taxid: 4513)

>sp|P81393|MYB08_ANTMA Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1

 Score =  186 bits (472), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 90/171 (52%), Positives = 122/171 (71%), Gaps = 11/171 (6%)

Query: 1   MGHN-CCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59
           MG + CC K    +G W+ EED++L+ ++  HG G W S+PK AGL RCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 60  LRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARG 119
           LRPDLKRG+FTE+E+ +II +H +LGN+W+ IA  LPGRTDNE+KN+WN+ I++KL++RG
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRG 120

Query: 120 IDPNTHNLISPTSCAQ-IYTNSTYSNACNK---LPHQVQLS------NSPV 160
           IDP TH  I+  + +Q   T  ++SNA +K     H+V +       NSPV
Sbjct: 121 IDPTTHRSINDGTASQDQVTTISFSNANSKEEDTKHKVAVDIMIKEENSPV 171

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1

 Score =  186 bits (471), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 81/136 (59%), Positives = 105/136 (77%), Gaps = 1/136 (0%)

Query: 1   MGHN-CCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59
           MG + CC K    +G W+ EEDE+L+ ++  HG G W S+PK AGL RCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 60  LRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARG 119
           LRPDLKRG+FTE+E+ +II +H +LGN+W+ IA  LPGRTDNE+KN+WN+ I++KLI RG
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRG 120

Query: 120 IDPNTHNLISPTSCAQ 135
           IDP +H  I  +S +Q
Sbjct: 121 IDPTSHRPIQESSASQ 136

Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1

 Score =  185 bits (469), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 79/132 (59%), Positives = 107/132 (81%), Gaps = 1/132 (0%)

Query: 1   MGHN-CCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59
           MG + CC K  + +G W+ EED+ L+ ++  HG G W S+P+ AGLQRCGKSCRLRW+NY
Sbjct: 1   MGRSPCCEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNY 60

Query: 60  LRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARG 119
           LRPDLKRG+FTE+E+ +II +H +LGN+W+ IA  LPGRTDNE+KN+WN+ IK+KL++RG
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRG 120

Query: 120 IDPNTHNLISPT 131
           IDPN+H LI+ +
Sbjct: 121 IDPNSHRLINES 132

Arabidopsis thaliana (taxid: 3702)

>sp|P80073|MYB2_PHYPA Myb-related protein Pp2 OS=Physcomitrella patens subsp. patens GN=PP2 PE=2 SV=1

 Score =  184 bits (466), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 78/126 (61%), Positives = 101/126 (80%), Gaps = 1/126 (0%)

Query: 1   MGHN-CCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59
           MG   CC K  ++RG W+ EED+KL+ H+T +G   W ++PKLAGL RCGKSCRLRW NY
Sbjct: 1   MGRKPCCEKVGLRRGPWTSEEDQKLVSHITNNGLSCWRAIPKLAGLLRCGKSCRLRWTNY 60

Query: 60  LRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARG 119
           LRPDLKRG F+E EE +I+D+H  LGNRW++IA  LPGRTDNE+KN+WN+ +KK+L ++G
Sbjct: 61  LRPDLKRGIFSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYWNTRLKKRLRSQG 120

Query: 120 IDPNTH 125
           +DPNTH
Sbjct: 121 LDPNTH 126

Possible transcription activator.

Physcomitrella patens subsp. patens (taxid: 145481)

>sp|O49608|MYB32_ARATH Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1

 Score =  183 bits (464), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 81/142 (57%), Positives = 109/142 (76%), Gaps = 1/142 (0%)

Query: 1   MGHN-CCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59
           MG + CC K    +G W+ EED+KLI ++  HG G W S+P+ AGLQRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKDHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINY 60

Query: 60  LRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARG 119
           LRPDLKRG+FT +E+ +II +H +LGN+W+ IA  LPGRTDNE+KN+WN+ +K+KL+ +G
Sbjct: 61  LRPDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKLLRKG 120

Query: 120 IDPNTHNLISPTSCAQIYTNST 141
           IDP TH  I+ T  +Q  ++S+
Sbjct: 121 IDPATHRPINETKTSQDSSDSS 142

Arabidopsis thaliana (taxid: 3702)

>sp|P81395|MYB30_ANTMA Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1

 Score =  183 bits (464), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 80/126 (63%), Positives = 101/126 (80%), Gaps = 1/126 (0%)

Query: 1   MGHN-CCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59
           MG + CC K    +G W+ EED++LI ++  HG G W S+PK AGL RCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 60  LRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARG 119
           LRPDLKRG+FTE+E+ III +H +LGN+W+ IA  LPGRTDNE+KN+WN+ IK+KL++RG
Sbjct: 61  LRPDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTHIKRKLVSRG 120

Query: 120 IDPNTH 125
           IDP TH
Sbjct: 121 IDPQTH 126

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|Q38851|MYB6_ARATH Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1

 Score =  180 bits (457), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 81/139 (58%), Positives = 106/139 (76%), Gaps = 3/139 (2%)

Query: 1   MGHN-CCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59
           MG + CC K    +G W+ EED++L+ ++  HG G W S+PK AGL RCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINY 60

Query: 60  LRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARG 119
           LRPDLKRG+FT+ E++III +H +LGN+W+ IA  LPGRTDNE+KN+WN+ IK+KL++ G
Sbjct: 61  LRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHG 120

Query: 120 IDPNTHNLI--SPTSCAQI 136
           IDP TH  I  S T  +Q+
Sbjct: 121 IDPQTHRQINESKTVSSQV 139

Arabidopsis thaliana (taxid: 3702)

>sp|P20025|MYB38_MAIZE Myb-related protein Zm38 OS=Zea mays PE=2 SV=1

 Score =  179 bits (454), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 81/144 (56%), Positives = 105/144 (72%), Gaps = 5/144 (3%)

Query: 1   MGHN-CCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59
           MG + CC K    RG W+ EEDE+L+ ++  HG G W S+PK AGL RCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNRGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 60  LRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARG 119
           LRPDLKRG+FT  E+ +I+ +H +LGN+W+ IA  LPGRTDNE+KN+WN+ +++KL+ RG
Sbjct: 61  LRPDLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHVRRKLLGRG 120

Query: 120 IDPNTHNLISPTSCAQIYTNSTYS 143
           IDP TH  I+    A   T +T S
Sbjct: 121 IDPVTHRPIA----ADAVTVTTVS 140

Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis.

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
224072395	341	predicted protein [Populus trichocarpa]	0.911	0.903	0.533	4e-83
224057912	331	predicted protein [Populus trichocarpa]	0.902	0.921	0.516	3e-80
225424971	345	PREDICTED: uncharacterized protein LOC10	0.943	0.924	0.522	4e-79
255578521	329	r2r3-myb transcription factor, putative	0.920	0.945	0.501	1e-78
33320067	340	transcription factor Myb [Capsicum annuu	0.958	0.952	0.498	1e-75
255550737	319	r2r3-myb transcription factor, putative	0.940	0.996	0.494	5e-74
359494668	337	PREDICTED: transcription factor MYB23-li	0.905	0.908	0.467	2e-73
297736102	349	unnamed protein product [Vitis vinifera]	0.869	0.842	0.474	4e-72
224101309	277	predicted protein [Populus trichocarpa]	0.789	0.963	0.461	4e-70
356555238	325	PREDICTED: transcription factor MYB23-li	0.920	0.956	0.455	3e-68

>gi|224072395|ref|XP_002303715.1| predicted protein [Populus trichocarpa] gi|222841147|gb|EEE78694.1| predicted protein [Populus trichocarpa]

 Score =  314 bits (805), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 185/347 (53%), Positives = 230/347 (66%), Gaps = 39/347 (11%)

Query: 2   GHNCCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLR 61
           GH CCSK+KVKRGLWSP+EDEKLIK++TTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLR
Sbjct: 16  GHQCCSKRKVKRGLWSPDEDEKLIKYITTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLR 75

Query: 62  PDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGID 121
           PDLKRGSFT QEE II++IHR+LGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIA+G+D
Sbjct: 76  PDLKRGSFTAQEESIIVEIHRMLGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIAQGLD 135

Query: 122 PNTHNLISPTSCAQIYTNSTYSNACNKLPHQV-QLSNSPVFLADSHMKEI---IKSPHLT 177
           P THNL+S       Y ++  +NAC  + +Q      +  F  DS + +    +K+P + 
Sbjct: 136 PKTHNLLS-----NNYKHNNNNNACELISYQYSHQQTTSTFTVDSQINDTSMDMKAPLI- 189

Query: 178 SPFNNVSSLDLINTTQYSISPSILHEISSLLPASEYQNPNQFWTLPEQNPHAS------S 231
            PF  +  +   +T  Y   P +LH+ SS +   EYQNPN    L E    +S      S
Sbjct: 190 -PFPTIPPVP--DTNPY---PPLLHKFSS-ISTCEYQNPNTLAFL-ESGSKSSIGSVPVS 241

Query: 232 MESANPCGFGLIDENNGLLGGSCFEITETDAGKETMLQPLMIDAQQEKVCEVGNGKITNE 291
             +++P  FG++DE     GG  +E+ ++   ++          Q E+  E+   K TNE
Sbjct: 242 SSTSHPSEFGMLDETCMWAGG--YELIQSIKSEK---------EQPEQQVELTIEK-TNE 289

Query: 292 LNDNGQNMNALFERADFDFDDHLVESTALSCGMYCNFSPIMNQFAWD 338
           L   GQNM A FE + FDFD   +EST L CGMY N SPI+ Q AW+
Sbjct: 290 LIGAGQNMVASFETSTFDFD--FLESTLLPCGMYYNPSPIV-QPAWN 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057912|ref|XP_002299386.1| predicted protein [Populus trichocarpa] gi|222846644|gb|EEE84191.1| predicted protein [Populus trichocarpa]

 Score =  305 bits (780), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 184/356 (51%), Positives = 230/356 (64%), Gaps = 51/356 (14%)

Query: 1   MGHNCCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
           MGH CC KQKVKRGLWSPEEDEKLIK++T HGHGSWSSVP LAGL+RCGKSCRLRWINYL
Sbjct: 1   MGHQCCRKQKVKRGLWSPEEDEKLIKYITIHGHGSWSSVPNLAGLERCGKSCRLRWINYL 60

Query: 61  RPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGI 120
           RPDLKRGS T +EERII+D HRILGN+WAQIAKHLPGRTDNEVKNFWNSCIKKKLIA+G+
Sbjct: 61  RPDLKRGSITAKEERIIVDTHRILGNKWAQIAKHLPGRTDNEVKNFWNSCIKKKLIAQGL 120

Query: 121 DPNTHNLISPTSCAQIYTNSTYSNACN--KLPHQVQLSNSPVFLADSHMKEI----IKSP 174
           DPNTHNL+S        TN  ++N  +  KL +      +  F  +S + +I    +K+P
Sbjct: 121 DPNTHNLLS--------TNYKHNNNNDAWKLSYHSHQQPTSTFTVNSQISDISSMVMKAP 172

Query: 175 HLTSPFNNVSSLDLINTTQYSISPSILHEISSLLPASEYQNPNQFWTLPEQNPHASSMES 234
            +  P   ++            +P + HE SS+L   EYQNP +  T  E     SS+ S
Sbjct: 173 PIPFPMIPLAP---------DTNPPLSHEFSSIL-TYEYQNP-RTQTFLESTASQSSIGS 221

Query: 235 -------ANPCGFGLIDENNGLLGGSCFEITETDAGKETMLQPLMIDAQQEKVCEVGNGK 287
                  ++P  FG++DE+    GG  ++ T++           +I  +++   +VG  K
Sbjct: 222 VPIFSSTSHPSEFGMLDESCMWAGG--YDPTQS-----------IIPEKKQPEQQVGIEK 268

Query: 288 IT-NELNDNGQNMNALFERAD----FDFDDHLVESTALSCGMYCNFSPIMNQFAWD 338
           IT +EL   GQNM+A FE ++    FDFD   VEST L CGMY N SPI +Q AWD
Sbjct: 269 ITGHELTSAGQNMDASFETSNFDFDFDFDFDFVESTLLPCGMYYNQSPI-DQLAWD 323

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424971|ref|XP_002265578.1| PREDICTED: uncharacterized protein LOC100258147 [Vitis vinifera] gi|297738187|emb|CBI27388.3| unnamed protein product [Vitis vinifera]

 Score =  301 bits (770), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 188/360 (52%), Positives = 232/360 (64%), Gaps = 41/360 (11%)

Query: 1   MGHNCCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
           MGH+CCSKQKVKRGLWSPEEDEKLI+++TT+GHG WSSVPKLAGLQRCGKSCRLRWINYL
Sbjct: 1   MGHHCCSKQKVKRGLWSPEEDEKLIRYITTNGHGCWSSVPKLAGLQRCGKSCRLRWINYL 60

Query: 61  RPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGI 120
           RPDLKRGSF+ QEER IID+HRI+GN+WAQIAK+LPGRTDNEVKNFWNSCIKKKLIA+G+
Sbjct: 61  RPDLKRGSFSAQEERTIIDVHRIVGNKWAQIAKYLPGRTDNEVKNFWNSCIKKKLIAQGL 120

Query: 121 DPNTHNLISPTSCAQIYTNSTYSNACNKLPHQVQLSNSPVFLADSHMKEIIKSPHLTSPF 180
           DPNTH+L+ P    QI  N+  +NAC  L H  Q   + VF +++ M +  K   + SPF
Sbjct: 121 DPNTHHLLLPID--QINNNNNNTNACT-LSHIHQQPTALVFSSNTQMIKDAKM-DMKSPF 176

Query: 181 NNVSSLDLINTTQYSISPSILHEISSLLPASEYQNPNQFW--TLPEQNPHA-------SS 231
             +  L     T  SI P  LH IS+ +P  E+ NPN  W  T+ +QN HA       SS
Sbjct: 177 LTLPPLPPPPDTSNSIHPPSLHGISA-IPPFEFLNPNYVWMTTVSDQNQHAVMELVNRSS 235

Query: 232 MESA--------NPCGFGLIDENNGLLGGSCFEITETDAGKETMLQPLMIDAQQE--KVC 281
           M  +        NP GF +++EN          + +T A  E   Q   +  QQE  KVC
Sbjct: 236 MGRSTPIGPYQINPSGFEVLEEN---------YMRDTIASLEPRKQLEGVQQQQEEDKVC 286

Query: 282 EVGNGKITNELNDNGQNMNALFERADFDFDDHLVESTALSC--GMYCN--FSPIMNQFAW 337
           E G    + EL  NG+N++  F+   FD +  L  S  L C  GMYC+   S  ++Q  W
Sbjct: 287 E-GKADNSKELR-NGENIDNSFDSCSFDLE--LEYSGLLPCGTGMYCSSTSSSCIDQLTW 342

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578521|ref|XP_002530124.1| r2r3-myb transcription factor, putative [Ricinus communis] gi|223530378|gb|EEF32268.1| r2r3-myb transcription factor, putative [Ricinus communis]

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 175/349 (50%), Positives = 222/349 (63%), Gaps = 38/349 (10%)

Query: 1   MGHNCCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
           MGH CCSKQKVKRGLWSPEEDEKLIK +TTHGHGSWSSVPKLAGL RCGKSCRLRWINYL
Sbjct: 1   MGHQCCSKQKVKRGLWSPEEDEKLIKFITTHGHGSWSSVPKLAGLHRCGKSCRLRWINYL 60

Query: 61  RPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGI 120
           RPDLKRGSFT QEER I+D+HRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIA+G+
Sbjct: 61  RPDLKRGSFTAQEERTIVDVHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIAQGL 120

Query: 121 DPNTHNLISPTSCAQIYTNSTYSNA---CNKLPHQVQLSNSPVF-LADSHMKEI---IKS 173
           DPNTH L+SP    Q   N+  ++    C  +        + VF ++ S   +    I++
Sbjct: 121 DPNTHKLLSPKHNKQNRNNNHSNSNINPCKLIYDNAHQQPTSVFTISTSQFSDFSMDIQT 180

Query: 174 PHLTSPFNNVSSLDLINTT--QYSISPSILHEISSLLPASEYQNPNQFWTLPEQNPHASS 231
                PF ++   D+ +++     ISP+   ++ +LL  +    P            ++S
Sbjct: 181 VSFNHPFPSLPPPDVTDSSCPPSYISPNQNPKVQALLDCTNQSYP--------MGSVSTS 232

Query: 232 MESANPCGFGLIDENNGLLGGSCFEITETDAGKETMLQPLMIDAQQ-EKVCEVGNGKITN 290
             ++ P GFG+IDEN       C          E ++QP   +  Q E+V E+   + TN
Sbjct: 233 CSTSYPSGFGIIDEN-------CL------WSSELIIQPSRHEEMQVEQVVEI---EKTN 276

Query: 291 ELNDNGQNMNA-LFERADFDFDDHLVESTALSCGMYCNFSPIMNQFAWD 338
           E +    NM+A L + ++FDF+   VEST +  GMY + SPI +Q AWD
Sbjct: 277 EFSSGKNNMDASLDQYSNFDFN--FVESTLMPAGMYYSSSPI-DQLAWD 322

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33320067|gb|AAQ05796.1|AF477956_1 transcription factor Myb [Capsicum annuum]

 Score =  289 bits (740), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 176/353 (49%), Positives = 216/353 (61%), Gaps = 29/353 (8%)

Query: 1   MGHNCCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
           MGH+CCSKQKVKRGLWSPEEDEKLIKH+TTHGH  WSSVPKLAGLQRCGKSCRLRWINYL
Sbjct: 1   MGHHCCSKQKVKRGLWSPEEDEKLIKHITTHGHSCWSSVPKLAGLQRCGKSCRLRWINYL 60

Query: 61  RPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGI 120
           RPDLKRG F+EQEERIIID+HRILGN+WAQIAKHLPGRTDNEVKNFWNSCIKKKLI++G 
Sbjct: 61  RPDLKRGCFSEQEERIIIDVHRILGNKWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGF 120

Query: 121 DPNTHNLISPTSCAQIYTNSTYSNACNKLPHQVQLSNSPVFLADSHMKEIIK------SP 174
           DPNTHNL+S  + A    +       N       +      L+ S  KE++       S 
Sbjct: 121 DPNTHNLLSRAAAAATPPHRNNKKKTNNNHTTSSVFTIETSLSPSSTKELVSMDMIKASL 180

Query: 175 HLTSPFNNV-SSLDLINTTQYSISPSILHEISSLLPASEYQNPNQFWTLPEQNPHASSME 233
              SPF +  SS  ++   Q+  S S L+E      A  Y N     T      H++S  
Sbjct: 181 AALSPFPHTNSSTTVLTMPQFQTSWSHLYE-----SACNYYNHVPIKTNIVYQNHSTSTG 235

Query: 234 SANPCGFGLIDENNGLLGGSCFEI-----TETDAGKETMLQPLMIDAQQEKVC-EVGNGK 287
           +     FG+I+E N + G + FE         + G E M Q   +  Q+E    EV    
Sbjct: 236 T-----FGIINE-NCMWGVTGFEPHHEFGPSNNIGHEEMQQGAQVQLQEENCLEEVYKVN 289

Query: 288 ITNELNDNGQ-NMNALF-ERADFDFDDHLVESTALSCGMYCNFSPIMNQFAWD 338
             +E N +G+   N  F + +DFDF+   V+S  + CG+Y N + I +Q AWD
Sbjct: 290 DLHEFNKHGRIAENVTFDDSSDFDFE--FVDSELIPCGIYTNVNSI-DQLAWD 339

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550737|ref|XP_002516417.1| r2r3-myb transcription factor, putative [Ricinus communis] gi|223544452|gb|EEF45972.1| r2r3-myb transcription factor, putative [Ricinus communis]

 Score =  284 bits (726), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 167/338 (49%), Positives = 206/338 (60%), Gaps = 20/338 (5%)

Query: 1   MGHNCCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
           MGH CCSKQKVKRGLWSPEEDEKL K++TT+GHGSWSSVPKLAGLQRCGKSCRLRWINYL
Sbjct: 1   MGHRCCSKQKVKRGLWSPEEDEKLGKYITTYGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60

Query: 61  RPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGI 120
           RPDLKRG+F+ QEE+IIID+HRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLI++G+
Sbjct: 61  RPDLKRGTFSAQEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGL 120

Query: 121 DPNTHNLISPTSCAQIYTNSTYSNACNKLPHQVQLSNSPVFLADSHMKEIIKSPHLTSPF 180
           DP THNLI     A I      +N+ +      Q +   +  A S M +   S  +T P 
Sbjct: 121 DPRTHNLIPSHQRANI-KKVVSNNSQSHQSQPHQQTKFSIITAKSKMTDT--SMQITDP- 176

Query: 181 NNVSSLDLINTTQYSISPSILHEISSLLPASEYQNPNQFWTLPEQNPHASSMESANPCGF 240
             + +L  +N  Q   S SI       L        N     P   P +SSM   NP GF
Sbjct: 177 -PILTLPSLNNIQQPSSASIFSSNDQNLHILSSTTINDSTIFP---PPSSSM---NPTGF 229

Query: 241 GLIDENNGLLGGSCFEITETDAGKETMLQPLMIDAQQEKVCEVGNGKITNELNDNGQNMN 300
           GL D+N       CF  T      E    P +   Q +++         +E N   ++M+
Sbjct: 230 GLFDDN-------CFWSTNNCTISEPFEVPTVEVLQAQELQLNQAYDEVDEANKGVEDMD 282

Query: 301 ALFERADFDFDDHLVESTALSCGMYCNFSPIMNQFAWD 338
           A F+ + F F+   VES+ LS  + C+   +M+  AW+
Sbjct: 283 ASFDSSSFGFE--FVESSMLSNSVLCHELNVMDDLAWN 318

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494668|ref|XP_002265355.2| PREDICTED: transcription factor MYB23-like [Vitis vinifera] gi|147854236|emb|CAN83435.1| hypothetical protein VITISV_010137 [Vitis vinifera]

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 172/368 (46%), Positives = 212/368 (57%), Gaps = 62/368 (16%)

Query: 1   MGHNCCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
           MGH CCSKQKVKRGLWSPEEDEKLI+++T HGHGSWSSVPKLAGLQRCGKSCRLRWINYL
Sbjct: 1   MGHRCCSKQKVKRGLWSPEEDEKLIRYITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60

Query: 61  RPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGI 120
           RP+LKRGSF+ QEE+ IID+HRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLI++G+
Sbjct: 61  RPELKRGSFSAQEEQSIIDVHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGL 120

Query: 121 DPNTHNLISPTSCAQIYTNSTYSNACNKL------PHQVQLSNSPVFLADSHMK-----E 169
           DP THNLIS          S   N  NK+      PHQ      PVF  +  M      E
Sbjct: 121 DPKTHNLIS----------SHQRNTSNKVVCSLPQPHQQPF---PVFTVNQQMTDDASME 167

Query: 170 IIKSPHLTSPFNNVSSLDLINTTQYSISPSILHEISSLLPASEYQNPNQFWTLPEQNPHA 229
           + + P   +      +   +  T               +P SEYQNPN  WT  +Q+   
Sbjct: 168 VNRLPPFVTLPPLPPTQPSLQQTM-------------AIPNSEYQNPNPVWTAKDQSSQY 214

Query: 230 S------------------SMESANPCGFGLIDENNGLLGGSCFEITETDAGKETMLQPL 271
           +                  S  S NP GFG +DEN  L+  +  E  E    ++      
Sbjct: 215 TISFPCGSSIGSTPIISSSSSSSVNPFGFGFLDEN--LIWNAHVEPLEGPRLEQVQTHQY 272

Query: 272 MIDAQQEKVCEVGNGKITNELNDN-GQNMNALFERADFDFDDHLVESTALSCGMYCNFSP 330
                Q+K  ++  G++ N+     GQ+++  F+ + FD +   VEST LS G  C    
Sbjct: 273 QDQHDQQK-NKINIGEMGNDHEQKCGQDIDVSFDSSSFDLE--FVESTLLS-GAICRDLS 328

Query: 331 IMNQFAWD 338
            M+  AW+
Sbjct: 329 SMDDLAWN 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736102|emb|CBI24140.3| unnamed protein product [Vitis vinifera]

 Score =  277 bits (709), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 169/356 (47%), Positives = 207/356 (58%), Gaps = 62/356 (17%)

Query: 1   MGHNCCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
           MGH CCSKQKVKRGLWSPEEDEKLI+++T HGHGSWSSVPKLAGLQRCGKSCRLRWINYL
Sbjct: 1   MGHRCCSKQKVKRGLWSPEEDEKLIRYITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60

Query: 61  RPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGI 120
           RP+LKRGSF+ QEE+ IID+HRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLI++G+
Sbjct: 61  RPELKRGSFSAQEEQSIIDVHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGL 120

Query: 121 DPNTHNLISPTSCAQIYTNSTYSNACNKL------PHQVQLSNSPVFLADSHMK-----E 169
           DP THNLIS          S   N  NK+      PHQ      PVF  +  M      E
Sbjct: 121 DPKTHNLIS----------SHQRNTSNKVVCSLPQPHQQPF---PVFTVNQQMTDDASME 167

Query: 170 IIKSPHLTSPFNNVSSLDLINTTQYSISPSILHEISSLLPASEYQNPNQFWTLPEQNPHA 229
           + + P   +      +   +  T               +P SEYQNPN  WT  +Q+   
Sbjct: 168 VNRLPPFVTLPPLPPTQPSLQQTM-------------AIPNSEYQNPNPVWTAKDQSSQY 214

Query: 230 S------------------SMESANPCGFGLIDENNGLLGGSCFEITETDAGKETMLQPL 271
           +                  S  S NP GFG +DEN  L+  +  E  E    ++      
Sbjct: 215 TISFPCGSSIGSTPIISSSSSSSVNPFGFGFLDEN--LIWNAHVEPLEGPRLEQVQTHQY 272

Query: 272 MIDAQQEKVCEVGNGKITNELNDN-GQNMNALFERADFDFDDHLVESTALSCGMYC 326
                Q+K  ++  G++ N+     GQ+++  F+ + FD +   VEST LS G  C
Sbjct: 273 QDQHDQQKN-KINIGEMGNDHEQKCGQDIDVSFDSSSFDLE--FVESTLLS-GAIC 324

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101309|ref|XP_002312226.1| predicted protein [Populus trichocarpa] gi|222852046|gb|EEE89593.1| predicted protein [Populus trichocarpa]

 Score =  271 bits (692), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 160/347 (46%), Positives = 199/347 (57%), Gaps = 80/347 (23%)

Query: 1   MGHNCCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
           MGH CC+KQKVKRGLWSPEEDEKL+K++T+HGHGSWSSVPK AGL+RCGKSCRLRWINYL
Sbjct: 1   MGHRCCNKQKVKRGLWSPEEDEKLVKYITSHGHGSWSSVPKFAGLKRCGKSCRLRWINYL 60

Query: 61  RPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGI 120
           RP+LKRGSF+ +EE+IIID+HRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKL+A+G+
Sbjct: 61  RPELKRGSFSAEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLMAQGL 120

Query: 121 DPNTHNLISPTSCAQIYTNSTYSNACNKLPHQVQLSNSPVF---LADSHMKEI---IKSP 174
           DP THNLI            ++  A NK+   +  SN   F     DS MK+    I  P
Sbjct: 121 DPKTHNLI-----------PSHQRAANKVACNISQSNQQPFSIITLDSKMKDYSMEINPP 169

Query: 175 HLT--SPFNNVSSLDLINTTQYSISPSILHEISSL-LPASEYQNPNQFWTLPEQNPHASS 231
            LT  SP+ + S          S  P +L   +SL LP S YQNP +             
Sbjct: 170 ILTLPSPYPSNS----------STQPPLLQTTTSLPLPTSSYQNPTKV------------ 207

Query: 232 MESANPCGFGLIDENNGLLGGSCFEITETDAGKETMLQPLMIDAQQEKVCEVGNGKITNE 291
                                  FE+ ++   +           Q  K+C+      T  
Sbjct: 208 -----------------------FEVMQSQDQEN----------QPNKICDAQIMDNTKG 234

Query: 292 LNDNGQNMNALFERADFDFDDHLVESTALSCGMYCNFSPIMNQFAWD 338
           ++D   NM+A F+   +D +   V+ST L  G  C     M+  AW+
Sbjct: 235 VHD---NMDASFDTTSYDLE--FVDSTILLPGSMCRDLSSMDDLAWN 276

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555238|ref|XP_003545941.1| PREDICTED: transcription factor MYB23-like [Glycine max]

 Score =  265 bits (677), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 160/351 (45%), Positives = 209/351 (59%), Gaps = 40/351 (11%)

Query: 1   MGHNCCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
           MGH CCSKQK+KRGLWSPEEDEKL++++ THG  SWSSVPK AGLQRCGKSCRLRWINYL
Sbjct: 1   MGHRCCSKQKIKRGLWSPEEDEKLLRYINTHGQKSWSSVPKFAGLQRCGKSCRLRWINYL 60

Query: 61  RPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGI 120
           RPDLKRGSFT +EE+IIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLI++G+
Sbjct: 61  RPDLKRGSFTAEEEQIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGL 120

Query: 121 DPNTHNLISPTSCAQIYTNSTYSNACNKLPHQVQLSNSPVFLADSHMKEIIKSPHLTSPF 180
           DP TH L+S    + + T S             Q SNS +F+  SH+          +P 
Sbjct: 121 DPQTHTLLSSHRRSSVCTISNIH----------QNSNS-IFIMSSHIP--------NAPL 161

Query: 181 NNVSSLDLINTTQYSISPSILHEISSLLPASEYQNPNQFWTLPEQN-PHASSMESA---- 235
            N S       +     P+ + +I S+  +SE+Q        P Q+  +   ME+A    
Sbjct: 162 ENTSK----TFSTLPKPPANIVQIPSVDVSSEFQTTTSNNGEPRQHLTYELLMENAITNI 217

Query: 236 ------NPCGFGLIDENNGLLGGSCFEITETDAG--KETMLQPLMIDAQQEKVCEVGNGK 287
                 NP    L + +N +   S   + +  A   +E     + +  +++K CE   G 
Sbjct: 218 CSPTYMNPSAVELFNNDNNVNWVSTVNVEDFSAQTLEEGTQVQVQVQHEKDKTCE-DMGI 276

Query: 288 ITNELNDNGQNMNALFERADFDFDDHLVESTALSCGMYCNFSPIMNQFAWD 338
              E N+     +A FE ++FDF   L+ES   S  +  +F+  M++ AW+
Sbjct: 277 DVREANNGNIETSASFESSNFDFG--LLESVLTSEFISYDFN-CMDELAWN 324

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
TAIR|locus:2087725	307	MYB67 "myb domain protein 67"	0.668	0.736	0.554	8.8e-63
TAIR|locus:2012375	366	MYB61 "AT1G09540" [Arabidopsis	0.686	0.633	0.510	2e-56
TAIR|locus:2146804	352	MYB86 "myb domain protein 86"	0.369	0.355	0.753	3.4e-54
TAIR|locus:2027508	314	MYB50 "myb domain protein 50"	0.375	0.404	0.716	8.9e-54
TAIR|locus:2088187	367	MYB26 "myb domain protein 26"	0.517	0.476	0.570	8.9e-54
TAIR|locus:2133382	348	MYB55 "myb domain protein 55"	0.381	0.370	0.661	1.7e-50
TAIR|locus:2195528	370	AtMYB103 "myb domain protein 1	0.597	0.545	0.488	9.5e-50
TAIR|locus:2075387	321	MYB107 "myb domain protein 107	0.553	0.582	0.5	1.8e-48
TAIR|locus:2162585	319	MYB49 "myb domain protein 49"	0.523	0.554	0.508	1.4e-46
TAIR|locus:2102152	388	MYB106 "myb domain protein 106	0.511	0.445	0.522	3e-46

TAIR|locus:2087725 MYB67 "myb domain protein 67" [Arabidopsis thaliana (taxid:3702)]

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 132/238 (55%), Positives = 164/238 (68%)

Query:     1 MGHNCCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
             MGH CC K KVKRGLWSPEEDEKL++++TTHGH SWSSVPKLAGLQRCGKSCRLRWINYL
Sbjct:    12 MGHRCCGKHKVKRGLWSPEEDEKLLRYITTHGHPSWSSVPKLAGLQRCGKSCRLRWINYL 71

Query:    61 RPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGI 120
             RPDL+RGSF E+EE+IIID+HRILGN+WAQIAKHLPGRTDNEVKNFWNSCIKKKL+++G+
Sbjct:    72 RPDLRRGSFNEEEEQIIIDVHRILGNKWAQIAKHLPGRTDNEVKNFWNSCIKKKLLSQGL 131

Query:   121 DPNTHNLISPTSCAQIYTNSTYSNACNKLPHQVQLSNSPVFLADSHMK-EI--IKSPHLT 177
             DP+THNL+ P+      ++S+ +N   K      +  +P  L  S     I  I  P  T
Sbjct:   132 DPSTHNLM-PSHKR---SSSSNNNNIPKPNKTTSIMKNPTDLDQSTTAFSITNINPPTST 187

Query:   178 SPFNNVSSLDLINTTQYSISPSILHEISSLLPASEYQNPNQFWTLPEQN--PHASSME 233
              P N + S +       ++ P I   +SS        +P     L ++N  PH S ++
Sbjct:   188 KP-NKLKSPNQTTIPSQTVIP-INDNMSSTQTMIPINDPMSS-LLDDENMIPHWSDVD 242

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2012375 MYB61 "AT1G09540" [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 126/247 (51%), Positives = 154/247 (62%)

Query:     1 MG-HNCCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59
             MG H+CC KQK+++GLWSPEEDEKL+ H+T HGHG WSSVPKLAGLQRCGKSCRLRWINY
Sbjct:     1 MGRHSCCYKQKLRKGLWSPEEDEKLLTHITNHGHGCWSSVPKLAGLQRCGKSCRLRWINY 60

Query:    60 LRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARG 119
             LRPDLKRG+F+ +EE +I+++H +LGNRW+QIA  LPGRTDNE+KN WNS IKKKL  RG
Sbjct:    61 LRPDLKRGAFSPEEENLIVELHAVLGNRWSQIASRLPGRTDNEIKNLWNSSIKKKLKQRG 120

Query:   120 IDPNTHNLISPTSCAQIYTNSTYSN---ACN--KLPHQVQLSNSPVFLA-DSHMKEIIKS 173
             IDPNTH  IS           T SN   + N  K P     +N   FL   S + +    
Sbjct:   121 IDPNTHKPISEVESFSDKDKPTTSNNKRSGNDHKSPSSSSATNQDFFLERPSDLSDYFGF 180

Query:   174 PHLTSPFNNVSSLDLINTTQYSISPSILHEIS-SLLPASEYQNP---NQFWTLPEQNPHA 229
               L   FN  S+L L  TT  S+   I  + S   +  S  Q P       +LP  N  +
Sbjct:   181 QKLN--FN--SNLGLSVTTDSSLCSMIPPQFSPGNMVGSVLQTPVCVKPSISLPPDNNSS 236

Query:   230 SSMESAN 236
             S +   +
Sbjct:   237 SPISGGD 243

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0010214 "seed coat development" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0010089 "xylem development" evidence=IMP;RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0001944 "vasculature development" evidence=IMP

GO:0048364 "root development" evidence=IMP

TAIR|locus:2146804 MYB86 "myb domain protein 86" [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 95/126 (75%), Positives = 112/126 (88%)

Query:     1 MG-HNCCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59
             MG H+CC KQK+++GLWSPEEDEKL+ ++T HGHG WSSVPKLAGLQRCGKSCRLRWINY
Sbjct:     1 MGRHSCCFKQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINY 60

Query:    60 LRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARG 119
             LRPDLKRG+F++ EE +II++H  LGNRW+QIA  LPGRTDNE+KNFWNSC+KKKL  +G
Sbjct:    61 LRPDLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKLRRKG 120

Query:   120 IDPNTH 125
             IDP TH
Sbjct:   121 IDPTTH 126

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2027508 MYB50 "myb domain protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 91/127 (71%), Positives = 113/127 (88%)

Query:     3 HNCCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRP 62
             H+CC KQK+++GLWSPEEDEKL+ ++T HGHG WSSVPKLAGL+RCGKSCRLRWINYLRP
Sbjct:     4 HSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLERCGKSCRLRWINYLRP 63

Query:    63 DLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDP 122
             DLKRG+F+ +E+ +I+++H +LGNRW+QIA  LPGRTDNE+KN WNSCIKKKL+ +GIDP
Sbjct:    64 DLKRGAFSSEEQNLIVELHAVLGNRWSQIAARLPGRTDNEIKNLWNSCIKKKLMKKGIDP 123

Query:   123 NTHNLIS 129
              TH  +S
Sbjct:   124 ITHKPLS 130

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2088187 MYB26 "myb domain protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 113/198 (57%), Positives = 138/198 (69%)

Query:     1 MGHN-CCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAG---------LQRCGK 50
             MGH+ CC+KQKVKRGLWSPEEDEKLI ++ ++GHG WSSVPK AG         LQRCGK
Sbjct:     1 MGHHSCCNKQKVKRGLWSPEEDEKLINYINSYGHGCWSSVPKHAGTYTHIHGFCLQRCGK 60

Query:    51 SCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSC 110
             SCRLRWINYLRPDLKRGSF+ QE  +II++H ILGNRWAQIAKHLPGRTDNEVKNFWNS 
Sbjct:    61 SCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSS 120

Query:   111 IKKKLIARGIDPNTHNLISPTSCAQIYTNSTYSNACN---------KLPHQVQLSNSPVF 161
             IKKKL++     + H+ +S  S A + TN  Y N  N         +    +  + +P F
Sbjct:   121 IKKKLMSHHHHGHHHHHLS--SMASLLTNLPYHNGFNPTTVDDESSRFMSNIITNTNPNF 178

Query:   162 LADSHMKEIIKSPHLTSP 179
             +  SH+   + SPH+ +P
Sbjct:   179 ITPSHLS--LPSPHVMTP 194

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009901 "anther dehiscence" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

TAIR|locus:2133382 MYB55 "myb domain protein 55" [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 94/142 (66%), Positives = 115/142 (80%)

Query:     1 MG-HNCCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAG------------LQR 47
             MG H+CC KQK+++GLWSPEEDEKL++++T +GHG WSSVPK AG            LQR
Sbjct:     1 MGRHSCCYKQKLRKGLWSPEEDEKLLRYITKYGHGCWSSVPKQAGTFLFIQIHLLFGLQR 60

Query:    48 CGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFW 107
             CGKSCRLRWINYLRPDLKRG+F++ EE +II++H +LGNRW+QIA  LPGRTDNE+KN W
Sbjct:    61 CGKSCRLRWINYLRPDLKRGAFSQDEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLW 120

Query:   108 NSCIKKKLIARGIDPNTHNLIS 129
             NSC+KKKL  RGIDP TH L++
Sbjct:   121 NSCLKKKLRLRGIDPVTHKLLT 142

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2195528 AtMYB103 "myb domain protein 103" [Arabidopsis thaliana (taxid:3702)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 105/215 (48%), Positives = 141/215 (65%)

Query:     1 MGHN-CCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59
             MGH+ CC++QKVKRGLWSPEEDEKLI+++TTHG+G WS VP+ AGLQRCGKSCRLRWINY
Sbjct:     1 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINY 60

Query:    60 LRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARG 119
             LRPD++RG F+ +EE++II +H ++GNRWA IA HLPGRTDNE+KN+WNS IKKK+  R 
Sbjct:    61 LRPDIRRGRFSPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI--R- 117

Query:   120 IDPNTHNLISPTSCAQIYTNSTYSNACNKLPHQVQLSNSPVFLADS-HMKEIIKSPHLTS 178
               P+ H      S   +  N+  ++        ++ S +     D+ H      SP+  +
Sbjct:   118 -KPHHHYSRHQPSVTTVTLNADTTSIATT----IEASTTTTSTIDNLHFDGFTDSPNQLN 172

Query:   179 PFNNVSSLDL-INTTQYSISPSILHEISSLLPASE 212
              F N    ++ I  T +S  P  L  + + LP  E
Sbjct:   173 -FTNDQETNIKIQETFFSHKPP-LFMVDTTLPILE 205

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

GO:1901430 "positive regulation of syringal lignin biosynthetic process" evidence=IMP

TAIR|locus:2075387 MYB107 "myb domain protein 107" [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 99/198 (50%), Positives = 135/198 (68%)

Query:     1 MGHN-CCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59
             MG + CC +  +K+G W+PEED+KLI H+  HGHGSW ++PK AGL RCGKSCRLRW NY
Sbjct:     1 MGRSPCCDESGLKKGPWTPEEDQKLINHIRKHGHGSWRALPKQAGLNRCGKSCRLRWTNY 60

Query:    60 LRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARG 119
             LRPD+KRG+FT +EE+ II++H +LGN+W+ IA HLPGRTDNE+KN+WN+ I+KKLI  G
Sbjct:    61 LRPDIKRGNFTAEEEQTIINLHSLLGNKWSSIAGHLPGRTDNEIKNYWNTHIRKKLIQMG 120

Query:   120 IDPNTH-----NLISPTSCAQIYTNSTYSNACNKLPHQVQLSNSPVFLADSHMKEIIKSP 174
             IDP TH     +L    +  Q+   + ++N  N L   +QL  + V  A   +  +I+  
Sbjct:   121 IDPVTHRPRTDHLNVLAALPQLLAAANFNNLLN-LNQNIQLDATSVAKAQL-LHSMIQ-- 176

Query:   175 HLTSPFNNVSSLDLINTT 192
              + S  N  SS D+ +TT
Sbjct:   177 -VLSNNNTSSSFDIHHTT 193

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

TAIR|locus:2162585 MYB49 "myb domain protein 49" [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 95/187 (50%), Positives = 129/187 (68%)

Query:     1 MGHNCCSKQ-KVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59
             MG +  S++ +VK+G W+PEEDEKL+ ++ THG G W ++PK AGL+RCGKSCRLRW NY
Sbjct:     1 MGKSSSSEESEVKKGPWTPEEDEKLVGYIQTHGPGKWRTLPKNAGLKRCGKSCRLRWTNY 60

Query:    60 LRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARG 119
             LRPD+KRG F+ QEE  II +HR+LGN+W+ IA HLPGRTDNE+KN+WN+ IKKKL+  G
Sbjct:    61 LRPDIKRGEFSLQEEETIIQLHRLLGNKWSAIAIHLPGRTDNEIKNYWNTHIKKKLLRMG 120

Query:   120 IDPNTH-NLISPTSCAQIYTNSTYSNACNKLPHQVQLSNSPVFLADSHMKEIIKSPHLTS 178
             IDP TH   I+    +   T+S + +    +       N+P  L  S++   I + HLT+
Sbjct:   121 IDPVTHCPRINLLQLSSFLTSSLFKSMSQPM-------NTPFDLTTSNINPDILN-HLTA 172

Query:   179 PFNNVSS 185
               NNV +
Sbjct:   173 SLNNVQT 179

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2102152 MYB106 "myb domain protein 106" [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 93/178 (52%), Positives = 121/178 (67%)

Query:     5 CCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDL 64
             CC K  +K+G W+PEED+KL+ ++  HGHGSW S+P+ AGLQRCGKSCRLRW NYLRPD+
Sbjct:    49 CCDKAGLKKGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLQRCGKSCRLRWTNYLRPDI 108

Query:    65 KRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNT 124
             KRG FT QEE+ II +H +LGNRW+ IA HLP RTDNE+KN+WN+ +KK+LI  GIDP T
Sbjct:   109 KRGKFTVQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLIKMGIDPVT 168

Query:   125 HNLISPTSCAQIYTNSTYSNACNKLPHQVQLSNSPVFLADSHMKEIIKSPHLTSPFNN 182
             H   + T  +   T  +  NA   L H  Q  ++ +  A++ +    K  HL    NN
Sbjct:   169 HKHKNETLSSS--TGQS-KNAAT-LSHMAQWESARLE-AEARLARESKLLHLQHYQNN 221

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0010091 "trichome branching" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021123001 SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (345 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	338
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	4e-75
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	2e-51
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	2e-17
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	3e-15
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-13
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	4e-12
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	8e-12
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	3e-11
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	5e-11
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	1e-10
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	2e-05
cd11659	53	cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding d	0.003

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  238 bits (608), Expect = 4e-75
 Identities = 97/130 (74%), Positives = 116/130 (89%), Gaps = 1/130 (0%)

Query: 1   MG-HNCCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59
           MG H+CC KQK+++GLWSPEEDEKL++H+T +GHG WSSVPK AGLQRCGKSCRLRWINY
Sbjct: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60

Query: 60  LRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARG 119
           LRPDLKRG+F++QEE +II++H +LGNRW+QIA  LPGRTDNE+KN WNSC+KKKL  RG
Sbjct: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120

Query: 120 IDPNTHNLIS 129
           IDPNTH  +S
Sbjct: 121 IDPNTHKPLS 130

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  170 bits (431), Expect = 2e-51
 Identities = 72/121 (59%), Positives = 93/121 (76%)

Query: 5   CCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDL 64
           CC+K  +KRG W+ EEDE L+  +   G G W S+PK AGL RCGKSCRLRW+NYLRP +
Sbjct: 17  CCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSV 76

Query: 65  KRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNT 124
           KRG  T  EE +I+ +HR+LGNRW+ IA  +PGRTDNE+KN+WN+ ++KKL+ +GIDP T
Sbjct: 77  KRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQT 136

Query: 125 H 125
           H
Sbjct: 137 H 137

Length = 249

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 82.5 bits (204), Expect = 2e-17
 Identities = 51/240 (21%), Positives = 83/240 (34%), Gaps = 29/240 (12%)

Query: 8   KQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG 67
           + K K G W   EDE L   V   G  +WS V  L      GK    RW N+L P LK+ 
Sbjct: 15  QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKK 73

Query: 68  SFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARG-------- 119
           +++E+E+  +ID+ + LG +W+ IA +   RT  +    + + ++               
Sbjct: 74  NWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLEDLSSTHDSKLQRRNE 133

Query: 120 ---IDP-------------NTHNLISPTSCAQIYTNSTYSNACNKLPHQVQLSNSPVFLA 163
              IDP             +          A         +  +  P +    N+P    
Sbjct: 134 FDKIDPFNENSARRPDIYEDELLEREVNREASYRLRVPRVSKADVKPREKGEENNPDIED 193

Query: 164 DSHMKEIIKSP---HLTSPFNNVSSLDLINTTQYSISPSILHEISSLLPASEYQNPNQFW 220
              MKE+  +    HL  P +           +       ++E       S  Q   + W
Sbjct: 194 LQEMKELKSASITRHLILP-SKSEINKAFKKGETLALEQEINEYKEKKGLSRKQFCERIW 252

Length = 512

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 68.3 bits (168), Expect = 3e-15
 Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
          RG W+PEEDE LI+ V  HG+G+WS + K     R    C+ RW NYL
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPG-RTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 64.1 bits (157), Expect = 1e-13
 Identities = 23/45 (51%), Positives = 34/45 (75%), Gaps = 1/45 (2%)

Query: 66  RGSFTEQEERIIIDIHRILGNR-WAQIAKHLPGRTDNEVKNFWNS 109
           RG +T +E+ ++I+  +  GN  W++IAKHLPGRTDN+ KN WN+
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNN 45

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 59.9 bits (146), Expect = 4e-12
 Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 66  RGSFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWNSCIKK 113
           +G +TE+E+ ++I++ +  G N W +IAK LPGRT  + +  W + +K 
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 59.3 bits (144), Expect = 8e-12
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 3/62 (4%)

Query: 16 WSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEER 75
          W+ EEDEKL+K V  +G   W  + +   L R   +CR RW   LRP   RG +T++E++
Sbjct: 1  WTEEEDEKLLKLVEKYG-NDWKQIAEE--LGRTPSACRDRWRRKLRPKRSRGPWTKEEDQ 57

Query: 76 II 77
           +
Sbjct: 58 RL 59

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 57.6 bits (140), Expect = 3e-11
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRP 62
          +G W+ EEDE LI+ V  +G  +W  + K     R  + CR RW N L+P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 56.8 bits (138), Expect = 5e-11
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 68  SFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWN 108
            +TE+E+ ++++  +  G N W +IAK LPGRT  + +  W 
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWR 42

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 55.7 bits (135), Expect = 1e-10
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 16 WSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
          W+ EEDE L++ V  +G  +W  + K     R  K CR RW N L
Sbjct: 2  WTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 69  FTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKL 115
           +TE+E+  ++ +    GN W QIA+ L GRT +  ++ W   ++ K 
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKR 46

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212557 cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 62  PDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDN 101
           P +K+  +T +E+  ++ + ++L  +W  IA  + GRT  
Sbjct: 1   PSIKKTEWTREEDEKLLHLAKLLPTQWRTIAP-IVGRTAQ 39

In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	338
PLN03091	459	hypothetical protein; Provisional	100.0
PLN03212	249	Transcription repressor MYB5; Provisional	100.0
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.7
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.66
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.6
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.52
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.48
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.48
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.38
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.37
PLN03212	249	Transcription repressor MYB5; Provisional	99.34
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.31
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.25
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.21
PLN03091	459	hypothetical protein; Provisional	99.2
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.08
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.95
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.92
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.8
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.41
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.73
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	97.59
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.58
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.53
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.5
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.35
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	97.05
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.99
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	96.96
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.69
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.69
PRK13923	170	putative spore coat protein regulator protein YlbO	96.45
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.45
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.22
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.11
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.68
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	95.61
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.11
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	94.7
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	94.62
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	94.51
PRK13923	170	putative spore coat protein regulator protein YlbO	93.35
KOG4282	345	consensus Transcription factor GT-2 and related pr	92.31
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	92.1
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	92.04
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	91.73
KOG2656	445	consensus DNA methyltransferase 1-associated prote	89.37
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	89.26
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	89.07
KOG1194	534	consensus Predicted DNA-binding protein, contains	81.73

>PLN03091 hypothetical protein; Provisional

Probab=100.00  E-value=6.8e-38  Score=311.05  Aligned_cols=133  Identities=72%  Similarity=1.347  Sum_probs=128.4

Q ss_pred             CCC-CCCccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHHHHHHH
Q 039070            1 MGH-NCCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIID   79 (338)
Q Consensus         1 mg~-~~c~K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~   79 (338)
                      ||| +||+|++++||+||+|||++|+++|++||.++|..||+.++++|+++|||+||.++|+|.+++++||+|||++|++
T Consensus         1 mgr~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLe   80 (459)
T PLN03091          1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE   80 (459)
T ss_pred             CCCCccCcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHH
Confidence            999 7999999999999999999999999999999999999999879999999999999999999999999999999999


Q ss_pred             HHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCCCCcCCCCCCCCCcc
Q 039070           80 IHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHNLISPTSC  133 (338)
Q Consensus        80 lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~~g~~~~e~~~l~pa~~  133 (338)
                      ++++||++|++||++|+|||+++||+||+.++||+++..++++.++.++.++..
T Consensus        81 L~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~t~kpl~e~E~  134 (459)
T PLN03091         81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVEN  134 (459)
T ss_pred             HHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCcccccc
Confidence            999999999999999999999999999999999999999999999988876543

>PLN03212 Transcription repressor MYB5; Provisional

Probab=100.00  E-value=2.5e-37  Score=288.74  Aligned_cols=127  Identities=57%  Similarity=1.159  Sum_probs=122.5

Q ss_pred             CCCccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHH
Q 039070            4 NCCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRI   83 (338)
Q Consensus         4 ~~c~K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~   83 (338)
                      |||.|++++|++||+|||++|+++|++||..+|..||+.++++|+++|||+||.++|+|.+++++||+|||++|++++++
T Consensus        16 pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~   95 (249)
T PLN03212         16 PCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRL   95 (249)
T ss_pred             CCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHh
Confidence            79999999999999999999999999999989999999997789999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCCCCcCCCCCCCC
Q 039070           84 LGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHNLISP  130 (338)
Q Consensus        84 ~G~kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~~g~~~~e~~~l~p  130 (338)
                      ||++|+.||++|+|||+++||+||+.++++++.++++.+.++.++.+
T Consensus        96 ~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~kp~~~  142 (249)
T PLN03212         96 LGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLDA  142 (249)
T ss_pred             ccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCCCCCCc
Confidence            99999999999999999999999999999999999999888877643

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=4.3e-36  Score=279.96  Aligned_cols=115  Identities=60%  Similarity=1.137  Sum_probs=109.8

Q ss_pred             CCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHHcCCCHHH
Q 039070           11 VKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGNRWAQ   90 (338)
Q Consensus        11 lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G~kWs~   90 (338)
                      +.||+||+|||++|+++|++||.++|..||+.+|++|++++||.||.|||+|++++|.||+|||++|++||++||++|+.
T Consensus         7 ~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs~   86 (238)
T KOG0048|consen    7 LVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWSL   86 (238)
T ss_pred             ccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHHH
Confidence            44799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCCHHHHHHHHHHHhhhHHHhCCCCcCCC
Q 039070           91 IAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTH  125 (338)
Q Consensus        91 IA~~LpgRT~~qcKnRW~slLkkkl~~~g~~~~e~  125 (338)
                      ||++|||||+++|||+|++.+||++.+.++++.+.
T Consensus        87 IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~~~~~~~  121 (238)
T KOG0048|consen   87 IAGRLPGRTDNEVKNHWNTHLKKKLLKMGIDPSTH  121 (238)
T ss_pred             HHhhCCCcCHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence            99999999999999999999999999888555443

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.70  E-value=1.5e-17  Score=171.59  Aligned_cols=119  Identities=22%  Similarity=0.438  Sum_probs=111.3

Q ss_pred             CCCCccCCCHHHHHHHHHHHHHhCCC---CcccccccccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHHcC
Q 039070            9 QKVKRGLWSPEEDEKLIKHVTTHGHG---SWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILG   85 (338)
Q Consensus         9 ~~lkkg~WT~EEDe~L~~lV~k~G~~---nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G   85 (338)
                      +-+++..||.|||.+|+++|+....+   +|++|-.+|+ ||+..|...||...|+|.+++|+||.+||.+|+.+|.+||
T Consensus       301 ~~L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ymp-gr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg  379 (939)
T KOG0049|consen  301 SQLSEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMP-GRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYG  379 (939)
T ss_pred             HHHHhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcC-CcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhC
Confidence            45677899999999999999998665   6999999999 9999999999999999999999999999999999999999


Q ss_pred             CC-HHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCCCCcCCCCCC
Q 039070           86 NR-WAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHNLI  128 (338)
Q Consensus        86 ~k-Ws~IA~~LpgRT~~qcKnRW~slLkkkl~~~g~~~~e~~~l  128 (338)
                      .+ |.+|-+.+|||++.|||.||.+.|....+.+.|+..++..+
T Consensus       380 ~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL  423 (939)
T KOG0049|consen  380 AKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLVEDEQL  423 (939)
T ss_pred             ccchhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeecchHHH
Confidence            65 99999999999999999999999999999999998887554

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.66  E-value=4.3e-17  Score=168.21  Aligned_cols=97  Identities=28%  Similarity=0.513  Sum_probs=91.9

Q ss_pred             CCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHHcC-CC
Q 039070            9 QKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILG-NR   87 (338)
Q Consensus         9 ~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G-~k   87 (338)
                      |.+++|+||++||.+|+.+|.+||...|.+|-..++ +|+..|||+||+|.|+...|++.||-.||+.|+.+|.+|| ++
T Consensus       356 Psikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vP-nRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~~YG~g~  434 (939)
T KOG0049|consen  356 PSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVP-NRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVKVYGKGN  434 (939)
T ss_pred             ccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcC-CccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHHHHccch
Confidence            789999999999999999999999999999999998 9999999999999999999999999999999999999999 67


Q ss_pred             HHHHHhhCCCCCHHHHHHH
Q 039070           88 WAQIAKHLPGRTDNEVKNF  106 (338)
Q Consensus        88 Ws~IA~~LpgRT~~qcKnR  106 (338)
                      |.+||..||.||..|...|
T Consensus       435 WakcA~~Lp~~t~~q~~rr  453 (939)
T KOG0049|consen  435 WAKCAMLLPKKTSRQLRRR  453 (939)
T ss_pred             HHHHHHHccccchhHHHHH
Confidence            9999999999999554433

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.60  E-value=2.6e-16  Score=116.82  Aligned_cols=60  Identities=40%  Similarity=0.852  Sum_probs=55.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHHHHH
Q 039070           16 WSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERII   77 (338)
Q Consensus        16 WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~L   77 (338)
                      ||+|||++|+++|.+||. +|..||+.|| .|++.||+.||.++|++.+++++||++||++|
T Consensus         1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN-DWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS--HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCc-CHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            999999999999999994 9999999998 89999999999999999999999999999987

...

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.52  E-value=7.4e-15  Score=150.40  Aligned_cols=108  Identities=31%  Similarity=0.535  Sum_probs=102.2

Q ss_pred             cCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHHcCCC
Q 039070            8 KQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGNR   87 (338)
Q Consensus         8 K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G~k   87 (338)
                      ..+++.|.|+..||+.|..+|+++|..+|..||..++ .|+++||+.||.++++|.++++.|+.|||+.|+++..++|++
T Consensus        15 ~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~   93 (512)
T COG5147          15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ   93 (512)
T ss_pred             cceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCch
Confidence            3578899999999999999999999999999999998 699999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCHHHHHHHHHHHhhhHHH
Q 039070           88 WAQIAKHLPGRTDNEVKNFWNSCIKKKLI  116 (338)
Q Consensus        88 Ws~IA~~LpgRT~~qcKnRW~slLkkkl~  116 (338)
                      |+.||..+++||+.+|.+||...+.....
T Consensus        94 wstia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          94 WSTIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhhccccCccchHHHHHHHHHHhhhhhc
Confidence            99999999999999999999988876544

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.48  E-value=1.9e-14  Score=145.96  Aligned_cols=106  Identities=25%  Similarity=0.599  Sum_probs=100.3

Q ss_pred             CCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHHcCCCHHH
Q 039070           11 VKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGNRWAQ   90 (338)
Q Consensus        11 lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G~kWs~   90 (338)
                      ++.|-|+.-||+.|..+|.+||...|++|++.+. ..+++||+.||..+|+|.+++..|+.|||++|+++.+.+...|..
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~-~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrt   83 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLN-RKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRT   83 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHh-hcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccch
Confidence            5789999999999999999999999999999998 899999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCCHHHHHHHHHHHhhhHHHhC
Q 039070           91 IAKHLPGRTDNEVKNFWNSCIKKKLIAR  118 (338)
Q Consensus        91 IA~~LpgRT~~qcKnRW~slLkkkl~~~  118 (338)
                      ||..| ||+.++|-.||+.++-......
T Consensus        84 Ia~i~-gr~~~qc~eRy~~ll~~~~s~~  110 (617)
T KOG0050|consen   84 IADIM-GRTSQQCLERYNNLLDVYVSYH  110 (617)
T ss_pred             HHHHh-hhhHHHHHHHHHHHHHHHHhhh
Confidence            99999 9999999999999997665443

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.48  E-value=2.7e-14  Score=147.88  Aligned_cols=105  Identities=29%  Similarity=0.584  Sum_probs=94.5

Q ss_pred             CccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCC--CCCCCCChHHHHHHHHHHH-------
Q 039070           12 KRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD--LKRGSFTEQEERIIIDIHR-------   82 (338)
Q Consensus        12 kkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~--lkkg~WT~EEDe~Ll~lv~-------   82 (338)
                      .+|.||+||++.|..+|.++| +.|.+|++.||  |.+..||+||++|...+  .++|+||.||+++|+++|.       
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~  459 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL  459 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence            799999999999999999999 59999999998  99999999999999987  4899999999999999995       


Q ss_pred             Hc-------------------CCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCC
Q 039070           83 IL-------------------GNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARG  119 (338)
Q Consensus        83 ~~-------------------G~kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~~g  119 (338)
                      ++                   +-.|+.|++.+.+|+..+||.+|+.++......++
T Consensus       460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~  515 (607)
T KOG0051|consen  460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKR  515 (607)
T ss_pred             cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhcc
Confidence            33                   12599999999999999999999999987654443

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.38  E-value=6.4e-13  Score=95.17  Aligned_cols=46  Identities=30%  Similarity=0.726  Sum_probs=42.0

Q ss_pred             CCCCChHHHHHHHHHHHHcCCC-HHHHHhhCC-CCCHHHHHHHHHHHh
Q 039070           66 RGSFTEQEERIIIDIHRILGNR-WAQIAKHLP-GRTDNEVKNFWNSCI  111 (338)
Q Consensus        66 kg~WT~EEDe~Ll~lv~~~G~k-Ws~IA~~Lp-gRT~~qcKnRW~slL  111 (338)
                      |++||+|||++|++++++||.+ |..||..|+ |||..+|++||++++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5899999999999999999988 999999999 999999999999864

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.37  E-value=2.2e-13  Score=101.05  Aligned_cols=57  Identities=25%  Similarity=0.592  Sum_probs=49.1

Q ss_pred             CChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCCCCcCCC
Q 039070           69 FTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTH  125 (338)
Q Consensus        69 WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~~g~~~~e~  125 (338)
                      ||+|||++|++++..||++|..||++|+.||..+|++||+..|++.+..+.|+.+++
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd   57 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEED   57 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHH
Confidence            999999999999999999999999999669999999999998888888888876654

...

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.34  E-value=8.5e-13  Score=124.35  Aligned_cols=79  Identities=22%  Similarity=0.486  Sum_probs=69.1

Q ss_pred             ccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHHcC-CCHHHHHhhC-CCCCHHHHHHHHHHHhhhHHHhCCC
Q 039070           43 AGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILG-NRWAQIAKHL-PGRTDNEVKNFWNSCIKKKLIARGI  120 (338)
Q Consensus        43 lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G-~kWs~IA~~L-pgRT~~qcKnRW~slLkkkl~~~g~  120 (338)
                      ++ .|+..-|-       ++.+++++||+|||++|+++|++|| .+|..||+++ ++||+.|||.||.++|++.++++.|
T Consensus        10 ~~-~~~~pcc~-------K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpW   81 (249)
T PLN03212         10 VS-KKTTPCCT-------KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGI   81 (249)
T ss_pred             CC-CCCCCCcc-------cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCC
Confidence            44 56555553       3478999999999999999999999 5799999998 6999999999999999999999999


Q ss_pred             CcCCCCCCC
Q 039070          121 DPNTHNLIS  129 (338)
Q Consensus       121 ~~~e~~~l~  129 (338)
                      +.+|+..|-
T Consensus        82 T~EED~lLl   90 (249)
T PLN03212         82 TSDEEDLIL   90 (249)
T ss_pred             ChHHHHHHH
Confidence            999988763

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.31  E-value=2e-13  Score=97.81  Aligned_cols=48  Identities=42%  Similarity=0.748  Sum_probs=43.2

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeeccc
Q 039070           13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL   60 (338)
Q Consensus        13 kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L   60 (338)
                      |++||+|||++|+++|.+||.++|..||+.||.+|++.||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            689999999999999999998679999999988999999999998875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.25  E-value=2.4e-12  Score=120.45  Aligned_cols=70  Identities=19%  Similarity=0.347  Sum_probs=63.7

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHcCCC-HHHHHhhCC-CCCHHHHHHHHHHHhhhHHHhCCCCcCCCCCCCCC
Q 039070           62 PDLKRGSFTEQEERIIIDIHRILGNR-WAQIAKHLP-GRTDNEVKNFWNSCIKKKLIARGIDPNTHNLISPT  131 (338)
Q Consensus        62 p~lkkg~WT~EEDe~Ll~lv~~~G~k-Ws~IA~~Lp-gRT~~qcKnRW~slLkkkl~~~g~~~~e~~~l~pa  131 (338)
                      +.+.||+||+|||++|+++|++||.+ |..||+.++ +|+..+||-||.++|++.++++.|+.+|+..|-.+
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~l   76 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKL   76 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHH
Confidence            44568999999999999999999955 999999998 99999999999999999999999999998776443

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.21  E-value=2.8e-11  Score=83.55  Aligned_cols=47  Identities=40%  Similarity=0.916  Sum_probs=44.4

Q ss_pred             CCCCChHHHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 039070           66 RGSFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWNSCIK  112 (338)
Q Consensus        66 kg~WT~EEDe~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~slLk  112 (338)
                      +++||++||.+|+.++.+|| .+|..||..|++||+.+|++||+.+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999998764

>PLN03091 hypothetical protein; Provisional

Probab=99.20  E-value=6.6e-12  Score=126.21  Aligned_cols=68  Identities=18%  Similarity=0.409  Sum_probs=62.5

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHcCC-CHHHHHhhC-CCCCHHHHHHHHHHHhhhHHHhCCCCcCCCCCC
Q 039070           61 RPDLKRGSFTEQEERIIIDIHRILGN-RWAQIAKHL-PGRTDNEVKNFWNSCIKKKLIARGIDPNTHNLI  128 (338)
Q Consensus        61 ~p~lkkg~WT~EEDe~Ll~lv~~~G~-kWs~IA~~L-pgRT~~qcKnRW~slLkkkl~~~g~~~~e~~~l  128 (338)
                      +..+++++||+|||++|+++|.+||. +|..||+.+ +||++.|||.||.++|++.++++.|+.+|+..|
T Consensus         9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lL   78 (459)
T PLN03091          9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLI   78 (459)
T ss_pred             CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHH
Confidence            35789999999999999999999995 699999998 599999999999999999999999999998643

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.08  E-value=2.8e-10  Score=77.52  Aligned_cols=44  Identities=34%  Similarity=0.819  Sum_probs=41.7

Q ss_pred             CCChHHHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHHh
Q 039070           68 SFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWNSCI  111 (338)
Q Consensus        68 ~WT~EEDe~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~slL  111 (338)
                      +||++|++.|+.++.+|| .+|..||+.+++||..+|++||++++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999 89999999999999999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.95  E-value=2e-10  Score=79.30  Aligned_cols=48  Identities=40%  Similarity=0.784  Sum_probs=44.5

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccC
Q 039070           13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLR   61 (338)
Q Consensus        13 kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~   61 (338)
                      +++||++||++|+.++..||..+|..||+.++ +|++.+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHHcC
Confidence            47899999999999999999669999999999 9999999999988764

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.92  E-value=1e-09  Score=114.26  Aligned_cols=120  Identities=24%  Similarity=0.266  Sum_probs=97.0

Q ss_pred             CCccCCCHHHHHHHHHHHHHhC----C-------------------CCcccccccccccccCccccceeecccCCCC-CC
Q 039070           11 VKRGLWSPEEDEKLIKHVTTHG----H-------------------GSWSSVPKLAGLQRCGKSCRLRWINYLRPDL-KR   66 (338)
Q Consensus        11 lkkg~WT~EEDe~L~~lV~k~G----~-------------------~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~l-kk   66 (338)
                      ++-+.|+++||+.|.+.|..|-    -                   +-|+.|.+.++ .|+...++.+-++...|-- ++
T Consensus       306 ~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp-~R~~~siy~~~rR~y~~FE~~r  384 (607)
T KOG0051|consen  306 INLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLP-YRDRKSIYHHLRRAYTPFENKR  384 (607)
T ss_pred             hhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcC-cccchhHHHHHHhcCCcccccc
Confidence            3448999999999999998772    1                   12678888888 5999999874334334433 99


Q ss_pred             CCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhhH--HHhCCCCcCCCCCCCCCc
Q 039070           67 GSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKK--LIARGIDPNTHNLISPTS  132 (338)
Q Consensus        67 g~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkkk--l~~~g~~~~e~~~l~pa~  132 (338)
                      |.||+||++.|..+|.++|+.|..|++.| ||.+.+|++||+.+.+..  ...+.|+.++...+-.++
T Consensus       385 g~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V  451 (607)
T KOG0051|consen  385 GKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTV  451 (607)
T ss_pred             CCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHH
Confidence            99999999999999999999999999999 999999999999999865  477778877765554443

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.80  E-value=1.3e-09  Score=74.27  Aligned_cols=44  Identities=39%  Similarity=0.739  Sum_probs=41.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecc
Q 039070           15 LWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINY   59 (338)
Q Consensus        15 ~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~   59 (338)
                      +||++||++|+.++.++|.++|..||+.++ +|++.+|+.||.++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~-~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC-CCCHHHHHHHHHHh
Confidence            599999999999999999779999999998 89999999999765

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.41  E-value=2.1e-08  Score=103.49  Aligned_cols=97  Identities=33%  Similarity=0.685  Sum_probs=86.0

Q ss_pred             CccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCC--CCCCCCCChHHHHHHHHHHHHcC----
Q 039070           12 KRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRP--DLKRGSFTEQEERIIIDIHRILG----   85 (338)
Q Consensus        12 kkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p--~lkkg~WT~EEDe~Ll~lv~~~G----   85 (338)
                      .+|.||+||++.|...+..+| +.|..|.+.++  |-+..||+||++|..+  .+++++|+.||+.+|...+...-    
T Consensus       290 ~~~~wt~e~~~eL~~~~~~~~-~~w~~ig~~~~--rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~e~~~~~~  366 (512)
T COG5147         290 QRGKWTKEEEQELAKLVVEHG-GSWTEIGKLLG--RMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMRLEAQ  366 (512)
T ss_pred             hhccCcccccccccccccccc-chhhHhhhhhc--cCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHHHHHHHHh
Confidence            478999999999999999999 59999999887  9999999999999988  68889999999999999887432    


Q ss_pred             ----CCHHHHHhhCCCCCHHHHHHHHHHHh
Q 039070           86 ----NRWAQIAKHLPGRTDNEVKNFWNSCI  111 (338)
Q Consensus        86 ----~kWs~IA~~LpgRT~~qcKnRW~slL  111 (338)
                          -.|..|++.+++|....|+.++..+.
T Consensus       367 ~~~~~~~~li~~~~~~~~~~~~~~~~~~~~  396 (512)
T COG5147         367 QSSRILWLLIAQNIRNRLQHHCRDKYGVLI  396 (512)
T ss_pred             hhhhhhHHHHHHhhhccccCCCCCcccccc
Confidence                25999999999999999988876644

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.73  E-value=1.2e-05  Score=60.59  Aligned_cols=49  Identities=14%  Similarity=0.365  Sum_probs=43.2

Q ss_pred             CccCCCHHHHHHHHHHHHHhCCCCc---ccccccccccc-cCccccceeeccc
Q 039070           12 KRGLWSPEEDEKLIKHVTTHGHGSW---SSVPKLAGLQR-CGKSCRLRWINYL   60 (338)
Q Consensus        12 kkg~WT~EEDe~L~~lV~k~G~~nW---~~IAk~lg~~R-t~kQCr~RW~n~L   60 (338)
                      ++-.||+||.++++++|+.+|.|+|   ..|++.|+..| +..||+.|++.|.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            4567999999999999999998899   99999887566 9999999887764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=97.59  E-value=4.4e-05  Score=78.77  Aligned_cols=64  Identities=19%  Similarity=0.387  Sum_probs=58.6

Q ss_pred             CCCCCCChHHHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCCCCcCCCCC
Q 039070           64 LKRGSFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHNL  127 (338)
Q Consensus        64 lkkg~WT~EEDe~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~~g~~~~e~~~  127 (338)
                      ++.|-|+..||+.|..++.+|| +.|++||+.++-.|+.+|++||...+.+.+++-.|+-.++..
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eeder   69 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDER   69 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHH
Confidence            5678999999999999999999 569999999999999999999999999999999998777643

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.58  E-value=0.00019  Score=54.02  Aligned_cols=46  Identities=20%  Similarity=0.310  Sum_probs=40.5

Q ss_pred             CCCCChHHHHHHHHHHHHcCC-CH---HHHHhhCC-CC-CHHHHHHHHHHHh
Q 039070           66 RGSFTEQEERIIIDIHRILGN-RW---AQIAKHLP-GR-TDNEVKNFWNSCI  111 (338)
Q Consensus        66 kg~WT~EEDe~Ll~lv~~~G~-kW---s~IA~~Lp-gR-T~~qcKnRW~slL  111 (338)
                      +-.||+||..++++++..+|. +|   ..|++.|. .| |..+|+.|.+.+.
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            457999999999999999996 89   99999884 45 9999999987654

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.53  E-value=2.4e-05  Score=79.16  Aligned_cols=90  Identities=17%  Similarity=0.374  Sum_probs=64.5

Q ss_pred             CCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeeccc-CCCCCCCCCC-------hHHHHHHHHH-
Q 039070           10 KVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL-RPDLKRGSFT-------EQEERIIIDI-   80 (338)
Q Consensus        10 ~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L-~p~lkkg~WT-------~EEDe~Ll~l-   80 (338)
                      .+-..-||.+|+-+|+++++.||.|||..||+++| .|++.+|+++|.+++ +..+-.-+|.       ..|+....+. 
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~fv~s~~~~~~~i~~~~~~~q~e~~~~~k~~  147 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKHFVNSPIFPLPDISLGIGVNQDEDAAMAKNR  147 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHHHhcCccccccccccccCcchHHHhhhcccc
Confidence            45567899999999999999999999999999999 999999999998854 3222222222       3344443333 


Q ss_pred             HHHcCC-------------CHHHHHhhCCCCCH
Q 039070           81 HRILGN-------------RWAQIAKHLPGRTD  100 (338)
Q Consensus        81 v~~~G~-------------kWs~IA~~LpgRT~  100 (338)
                      +..++.             .=.+|+.+||+|.+
T Consensus       148 ~~~~~~~~~~pr~p~~~~p~~~e~~gyMp~R~d  180 (438)
T KOG0457|consen  148 AEPFQPTDLVPRKPGVSNPLRREISGYMPGRLD  180 (438)
T ss_pred             cccCCCCCCCCCCCCCCCchHHHHhhhCccchh
Confidence            222221             23588999999954

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.50  E-value=0.00014  Score=65.17  Aligned_cols=53  Identities=17%  Similarity=0.401  Sum_probs=46.1

Q ss_pred             CCCCCChHHHHHHHHHHHHc---CCC----HHHHHhhCCCCCHHHHHHHHHHHhhhHHHhC
Q 039070           65 KRGSFTEQEERIIIDIHRIL---GNR----WAQIAKHLPGRTDNEVKNFWNSCIKKKLIAR  118 (338)
Q Consensus        65 kkg~WT~EEDe~Ll~lv~~~---G~k----Ws~IA~~LpgRT~~qcKnRW~slLkkkl~~~  118 (338)
                      +...||.|||.+|.+.|..|   |+.    ...++..| +||+.+|.-|||+.+|+.+...
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~~   62 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEEA   62 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHHH
Confidence            46789999999999999887   432    88889999 9999999999999999987643

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.35  E-value=0.0004  Score=70.55  Aligned_cols=49  Identities=24%  Similarity=0.489  Sum_probs=44.5

Q ss_pred             CCCCCCCChHHHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHHh
Q 039070           63 DLKRGSFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWNSCI  111 (338)
Q Consensus        63 ~lkkg~WT~EEDe~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~slL  111 (338)
                      .+-...||.+||-+|++++..|| ++|..||.++..||..+|+.||.++.
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence            45567899999999999999999 88999999999999999999997655

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=97.05  E-value=0.00079  Score=52.01  Aligned_cols=50  Identities=20%  Similarity=0.454  Sum_probs=33.3

Q ss_pred             CCCCChHHHHHHHHHHHHc--------CCC-HHHHHhhCC-CCCHHHHHHHHHHHhhhHH
Q 039070           66 RGSFTEQEERIIIDIHRIL--------GNR-WAQIAKHLP-GRTDNEVKNFWNSCIKKKL  115 (338)
Q Consensus        66 kg~WT~EEDe~Ll~lv~~~--------G~k-Ws~IA~~Lp-gRT~~qcKnRW~slLkkkl  115 (338)
                      +.+||.|||+.|++.|+++        |++ |.++++.-+ .+|-.+.|+||...|+.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            4689999999999999765        233 999999877 8999999999988887653

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.99  E-value=0.00073  Score=53.12  Aligned_cols=49  Identities=29%  Similarity=0.611  Sum_probs=34.8

Q ss_pred             CCCCChHHHHHHHHHHHH------cC--C------CHHHHHhhC----CCCCHHHHHHHHHHHhhhH
Q 039070           66 RGSFTEQEERIIIDIHRI------LG--N------RWAQIAKHL----PGRTDNEVKNFWNSCIKKK  114 (338)
Q Consensus        66 kg~WT~EEDe~Ll~lv~~------~G--~------kWs~IA~~L----pgRT~~qcKnRW~slLkkk  114 (338)
                      |..||.+|...|++++..      ++  .      .|..||..|    ..||+.||++||.++.+..
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Y   67 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKY   67 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            357999999999999877      21  1      399999987    4699999999999966553

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=96.96  E-value=0.0014  Score=60.89  Aligned_cols=98  Identities=20%  Similarity=0.355  Sum_probs=70.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccccc--ccccCccccceeecccC-CC--------------------CCCCCCCh
Q 039070           15 LWSPEEDEKLIKHVTTHGHGSWSSVPKLAG--LQRCGKSCRLRWINYLR-PD--------------------LKRGSFTE   71 (338)
Q Consensus        15 ~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg--~~Rt~kQCr~RW~n~L~-p~--------------------lkkg~WT~   71 (338)
                      +|++++|-+|+.+|..-.  +-..|++.+.  ..-|-+.+.+||+..|. |.                    ..+.+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            599999999999998765  4666665433  23455567789987653 22                    23568999


Q ss_pred             HHHHHHHHHHHHcCC---CHHHHHh----hC-CCCCHHHHHHHHHHHhhhH
Q 039070           72 QEERIIIDIHRILGN---RWAQIAK----HL-PGRTDNEVKNFWNSCIKKK  114 (338)
Q Consensus        72 EEDe~Ll~lv~~~G~---kWs~IA~----~L-pgRT~~qcKnRW~slLkkk  114 (338)
                      +|+++|........+   .+.+|=.    .+ ++||+.++.++|+.+.+..
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~  129 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYH  129 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhc
Confidence            999999998766654   3666633    23 8899999999998655443

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.69  E-value=0.0022  Score=66.79  Aligned_cols=46  Identities=20%  Similarity=0.447  Sum_probs=42.8

Q ss_pred             CCCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 039070           65 KRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSC  110 (338)
Q Consensus        65 kkg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~sl  110 (338)
                      -++.||.+|..+|++++..||.+|.+||.++.+||..+|-.|+..+
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence            4578999999999999999999999999999999999999999653

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.69  E-value=0.002  Score=66.18  Aligned_cols=45  Identities=16%  Similarity=0.395  Sum_probs=41.9

Q ss_pred             CCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 039070           66 RGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSC  110 (338)
Q Consensus        66 kg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~sl  110 (338)
                      ...||.+|..+|++.+..||..|.+||+|+++||..||--||-++
T Consensus       279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            348999999999999999999999999999999999999999653

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.45  E-value=0.0037  Score=56.80  Aligned_cols=53  Identities=15%  Similarity=0.345  Sum_probs=43.8

Q ss_pred             CCCCCCChHHHHHHHHHHHHcCC----C---HHHHHhhCCCCCHHHHHHHHHHHhhhHHHh
Q 039070           64 LKRGSFTEQEERIIIDIHRILGN----R---WAQIAKHLPGRTDNEVKNFWNSCIKKKLIA  117 (338)
Q Consensus        64 lkkg~WT~EEDe~Ll~lv~~~G~----k---Ws~IA~~LpgRT~~qcKnRW~slLkkkl~~  117 (338)
                      .+.+.||.|+|.+|.+.|..|+.    +   ...++..| +||..+|..|||..+|+++..
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Yee   62 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQE   62 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHHH
Confidence            35679999999999998888863    2   56667788 999999999999999987543

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.45  E-value=0.00081  Score=69.00  Aligned_cols=46  Identities=22%  Similarity=0.536  Sum_probs=42.7

Q ss_pred             CccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecc
Q 039070           12 KRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINY   59 (338)
Q Consensus        12 kkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~   59 (338)
                      ....||.+|..+|+++|+.||. +|.+||+++| +|+..||..|+.+.
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVg-tKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGD-DWDKVARHVG-TKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhh-hHHHHHHHhC-CCCHHHHHHHHHcC
Confidence            5669999999999999999995 9999999999 99999999998763

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.22  E-value=0.0016  Score=67.83  Aligned_cols=48  Identities=21%  Similarity=0.558  Sum_probs=43.6

Q ss_pred             CCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecc
Q 039070           10 KVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINY   59 (338)
Q Consensus        10 ~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~   59 (338)
                      ..-++.||.+|+.+|+++|+.||. +|.+||.++| .|+..||..++.+.
T Consensus       250 ~~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg-~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  250 ESARPNWTEQETLLLLEAIEMYGD-DWNKVADHVG-TKSQEQCILKFLRL  297 (506)
T ss_pred             ccCCCCccHHHHHHHHHHHHHhcc-cHHHHHhccC-CCCHHHHHHHHHhc
Confidence            345788999999999999999995 9999999999 99999999998763

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.11  E-value=0.0017  Score=50.23  Aligned_cols=52  Identities=23%  Similarity=0.388  Sum_probs=33.2

Q ss_pred             ccCCCHHHHHHHHHHHHHhCC------CC--cccccccccccccCccccceeecccCCCC
Q 039070           13 RGLWSPEEDEKLIKHVTTHGH------GS--WSSVPKLAGLQRCGKSCRLRWINYLRPDL   64 (338)
Q Consensus        13 kg~WT~EEDe~L~~lV~k~G~------~n--W~~IAk~lg~~Rt~kQCr~RW~n~L~p~l   64 (338)
                      |.+||.|||+.|+++|..+..      ||  |.++++..+..++..+-|+||.+.|.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            568999999999999976531      33  99999877668999999999999887643

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.68  E-value=0.029  Score=43.45  Aligned_cols=48  Identities=25%  Similarity=0.533  Sum_probs=40.1

Q ss_pred             CCCCChHHHHHHHHHHHHcC-----------------CCHHHHHhhC-----CCCCHHHHHHHHHHHhhh
Q 039070           66 RGSFTEQEERIIIDIHRILG-----------------NRWAQIAKHL-----PGRTDNEVKNFWNSCIKK  113 (338)
Q Consensus        66 kg~WT~EEDe~Ll~lv~~~G-----------------~kWs~IA~~L-----pgRT~~qcKnRW~slLkk  113 (338)
                      +..||.+|.+.|++++.+|.                 .-|..|+..|     +.||..+++.+|.++...
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~   71 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK   71 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            45799999999999998872                 1399999976     369999999999987654

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=95.61  E-value=0.003  Score=56.80  Aligned_cols=50  Identities=30%  Similarity=0.630  Sum_probs=42.7

Q ss_pred             CCccCCCHHHHHHHHHHHHHhCC-C-----CcccccccccccccCccccceeecccCC
Q 039070           11 VKRGLWSPEEDEKLIKHVTTHGH-G-----SWSSVPKLAGLQRCGKSCRLRWINYLRP   62 (338)
Q Consensus        11 lkkg~WT~EEDe~L~~lV~k~G~-~-----nW~~IAk~lg~~Rt~kQCr~RW~n~L~p   62 (338)
                      .+...||.|||.+|.+.|-+|-. |     .+.+|++.++  ||+..|.-||..+++.
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VRk   57 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVRK   57 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHHH
Confidence            56788999999999999999832 2     3889999886  9999999999988763

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.11  E-value=0.0048  Score=61.04  Aligned_cols=50  Identities=20%  Similarity=0.510  Sum_probs=45.6

Q ss_pred             CCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccC
Q 039070           11 VKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLR   61 (338)
Q Consensus        11 lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~   61 (338)
                      +----|+..|+-+|++.....|-|||..||.++| .|....|+++|.+++.
T Consensus        61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~y~  110 (432)
T COG5114          61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKMYD  110 (432)
T ss_pred             ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence            3345699999999999999999999999999999 9999999999988765

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=94.70  E-value=0.0053  Score=48.22  Aligned_cols=47  Identities=28%  Similarity=0.587  Sum_probs=31.7

Q ss_pred             ccCCCHHHHHHHHHHHHHh------C--CC-----Ccccccccc---cccccCccccceeecc
Q 039070           13 RGLWSPEEDEKLIKHVTTH------G--HG-----SWSSVPKLA---GLQRCGKSCRLRWINY   59 (338)
Q Consensus        13 kg~WT~EEDe~L~~lV~k~------G--~~-----nW~~IAk~l---g~~Rt~kQCr~RW~n~   59 (338)
                      |..||.+|...|++++...      +  ..     -|..||..|   |..|++.||+.+|.+.
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L   63 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL   63 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            4579999999999999872      1  11     399999854   5679999999999874

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=94.62  E-value=0.051  Score=61.27  Aligned_cols=100  Identities=16%  Similarity=0.297  Sum_probs=76.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccc-------eeecc----------------------------
Q 039070           15 LWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRL-------RWINY----------------------------   59 (338)
Q Consensus        15 ~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~-------RW~n~----------------------------   59 (338)
                      .||.-+=..++.+..+||..+...||..++ +++...++.       ||...                            
T Consensus       826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~  904 (1033)
T PLN03142        826 TWSRRDFNAFIRACEKYGRNDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIG  904 (1033)
T ss_pred             cccHHHHHHHHHHHHHhCHhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            488888888888999999888889998886 677666552       22110                            


Q ss_pred             --------------c-CCCCCCCCCChHHHHHHHHHHHHcC-CCHHHHHh------------hCCCCCHHHHHHHHHHHh
Q 039070           60 --------------L-RPDLKRGSFTEQEERIIIDIHRILG-NRWAQIAK------------HLPGRTDNEVKNFWNSCI  111 (338)
Q Consensus        60 --------------L-~p~lkkg~WT~EEDe~Ll~lv~~~G-~kWs~IA~------------~LpgRT~~qcKnRW~slL  111 (338)
                                    + .+..++..||+|||..|+-.+.+|| .+|.+|-.            .+..||+.++..|-++++
T Consensus       905 ~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~  984 (1033)
T PLN03142        905 KKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLI  984 (1033)
T ss_pred             HHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHH
Confidence                          0 1233345699999999999999999 67999844            236899999999999998


Q ss_pred             hhHH
Q 039070          112 KKKL  115 (338)
Q Consensus       112 kkkl  115 (338)
                      +-..
T Consensus       985 ~~~~  988 (1033)
T PLN03142        985 RLIE  988 (1033)
T ss_pred             HHHH
Confidence            7543

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=94.51  E-value=0.045  Score=54.37  Aligned_cols=46  Identities=24%  Similarity=0.483  Sum_probs=42.0

Q ss_pred             CCCCChHHHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHHh
Q 039070           66 RGSFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWNSCI  111 (338)
Q Consensus        66 kg~WT~EEDe~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~slL  111 (338)
                      -..|+.+|+-+|++...-+| ++|..||.+++.|+..+||.||..+.
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y  109 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMY  109 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            45799999999999999999 78999999999999999999996654

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=93.35  E-value=0.014  Score=53.03  Aligned_cols=50  Identities=26%  Similarity=0.512  Sum_probs=40.2

Q ss_pred             CCCccCCCHHHHHHHHHHHHHhCCCC------cccccccccccccCccccceeecccC
Q 039070           10 KVKRGLWSPEEDEKLIKHVTTHGHGS------WSSVPKLAGLQRCGKSCRLRWINYLR   61 (338)
Q Consensus        10 ~lkkg~WT~EEDe~L~~lV~k~G~~n------W~~IAk~lg~~Rt~kQCr~RW~n~L~   61 (338)
                      +.++..||.|||.+|.+.|-+|+...      ...++..+.  |+..+|..||..+++
T Consensus         2 k~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~--rt~aac~fRwNs~vr   57 (170)
T PRK13923          2 KTRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK--RTAAACGFRWNSVVR   57 (170)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--hhHHHHHhHHHHHHH
Confidence            45788999999999999999987532      566667765  999999999965554

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=92.31  E-value=0.29  Score=48.11  Aligned_cols=49  Identities=22%  Similarity=0.392  Sum_probs=40.1

Q ss_pred             CCCCChHHHHHHHHHHHHc----------CCCHHHHHhhC----CCCCHHHHHHHHHHHhhhH
Q 039070           66 RGSFTEQEERIIIDIHRIL----------GNRWAQIAKHL----PGRTDNEVKNFWNSCIKKK  114 (338)
Q Consensus        66 kg~WT~EEDe~Ll~lv~~~----------G~kWs~IA~~L----pgRT~~qcKnRW~slLkkk  114 (338)
                      ...|+.+|-..||++..+.          +..|..||+.+    --||+.+||.+|.++.++.
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Y  116 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKY  116 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence            4689999999999987643          34599999965    3599999999999977654

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=92.10  E-value=0.29  Score=42.02  Aligned_cols=51  Identities=25%  Similarity=0.482  Sum_probs=40.9

Q ss_pred             CCCCCCCChHHHHHHHHHHHHcCC----CHHHHHhh------------CCCCCHHHHHHHHHHHhhh
Q 039070           63 DLKRGSFTEQEERIIIDIHRILGN----RWAQIAKH------------LPGRTDNEVKNFWNSCIKK  113 (338)
Q Consensus        63 ~lkkg~WT~EEDe~Ll~lv~~~G~----kWs~IA~~------------LpgRT~~qcKnRW~slLkk  113 (338)
                      ..++..||++||..|+-++.+||-    .|..|-..            +..||+.++..|-+++++-
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~  112 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL  112 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence            456779999999999999999996    69888652            3679999999999999874

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=92.04  E-value=0.44  Score=37.74  Aligned_cols=46  Identities=30%  Similarity=0.548  Sum_probs=35.7

Q ss_pred             CCChHHHHHHHHHHHHc---CC----------CHHHHHhhC-----CCCCHHHHHHHHHHHhhh
Q 039070           68 SFTEQEERIIIDIHRIL---GN----------RWAQIAKHL-----PGRTDNEVKNFWNSCIKK  113 (338)
Q Consensus        68 ~WT~EEDe~Ll~lv~~~---G~----------kWs~IA~~L-----pgRT~~qcKnRW~slLkk  113 (338)
                      .||+++++.|++++.+.   |+          .|..|++.|     ...|..+|++||..+.+.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~   64 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD   64 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence            59999999999987543   22          299999877     234789999999876654

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=91.73  E-value=0.027  Score=43.55  Aligned_cols=49  Identities=24%  Similarity=0.415  Sum_probs=38.2

Q ss_pred             CccCCCHHHHHHHHHHHHHhCC----------------CCcccccccc----cccccCccccceeeccc
Q 039070           12 KRGLWSPEEDEKLIKHVTTHGH----------------GSWSSVPKLA----GLQRCGKSCRLRWINYL   60 (338)
Q Consensus        12 kkg~WT~EEDe~L~~lV~k~G~----------------~nW~~IAk~l----g~~Rt~kQCr~RW~n~L   60 (338)
                      ++..||.+|.+.|+++|.+|..                .-|..|+..+    |..|+..|++.+|.+..
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999832                1399999744    22689999999998753

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=89.37  E-value=0.26  Score=50.12  Aligned_cols=85  Identities=24%  Similarity=0.358  Sum_probs=64.4

Q ss_pred             CcccccccccccccCccccceeecccCCC-------------------------CCCCCCChHHHHHHHHHHHHcCCCHH
Q 039070           35 SWSSVPKLAGLQRCGKSCRLRWINYLRPD-------------------------LKRGSFTEQEERIIIDIHRILGNRWA   89 (338)
Q Consensus        35 nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~-------------------------lkkg~WT~EEDe~Ll~lv~~~G~kWs   89 (338)
                      .|.-++=..+ -|...--..||.+..++.                         ++...||.+|-.-|+++++.|--+|-
T Consensus        75 ~W~w~pFtn~-aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~  153 (445)
T KOG2656|consen   75 PWKWVPFTNS-ARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFF  153 (445)
T ss_pred             CceeeccCCc-cccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEE
Confidence            4665554333 566666677787763321                         23457999999999999999999999


Q ss_pred             HHHhh-----CCC-CCHHHHHHHHHHHhhhHHHhCCC
Q 039070           90 QIAKH-----LPG-RTDNEVKNFWNSCIKKKLIARGI  120 (338)
Q Consensus        90 ~IA~~-----Lpg-RT~~qcKnRW~slLkkkl~~~g~  120 (338)
                      -||..     ++. ||-.++|.||+..-++-++.+.-
T Consensus       154 VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~  190 (445)
T KOG2656|consen  154 VIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARAP  190 (445)
T ss_pred             EEeeccchhhccccccHHHHHHHHHHHHHHHHHccCC
Confidence            99987     555 99999999999988887766543

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=89.26  E-value=0.61  Score=47.52  Aligned_cols=47  Identities=17%  Similarity=0.236  Sum_probs=43.0

Q ss_pred             CCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070           67 GSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK  113 (338)
Q Consensus        67 g~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk  113 (338)
                      .+||.+|-++..++...+|..++.||..+|.|...|||-+|..--|+
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~  412 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKV  412 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhh
Confidence            47999999999999999999999999999999999999999765443

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=89.07  E-value=1.2  Score=31.82  Aligned_cols=42  Identities=29%  Similarity=0.366  Sum_probs=32.7

Q ss_pred             hHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070           71 EQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK  113 (338)
Q Consensus        71 ~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk  113 (338)
                      ++++..++.++...|-.|.+||+.+ |.|...|+.+....+++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~~   53 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARKK   53 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHhh
Confidence            5678889999999999999999999 99999999998776653

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=81.73  E-value=3.2  Score=43.31  Aligned_cols=49  Identities=16%  Similarity=0.316  Sum_probs=43.8

Q ss_pred             CCCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070           65 KRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK  113 (338)
Q Consensus        65 kkg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk  113 (338)
                      -...||.||--++-++...||.++.+|-+.||.|+-..+..+|+...|.
T Consensus       186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~  234 (534)
T KOG1194|consen  186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKT  234 (534)
T ss_pred             CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHH
Confidence            3468999999999999999999999999999999999999988776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	338
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		1e-27
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		1e-26
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		3e-26
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		4e-26
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		2e-25
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		7e-14
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		3e-13
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		4e-13
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		5e-12
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		1e-08
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		4e-06
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		9e-06
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		3e-05

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  120 bits (301), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 57/104 (54%), Positives = 78/104 (75%), Gaps = 3/104 (2%)
Query: 13  RGLWSPEEDEKLIKHVTTHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPDLKRGSFTE 71
           +G W+ EED+K+I+ V  +G   W+ + K L G  R GK CR RW N+L P++K+ S+TE
Sbjct: 7   KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG--RLGKQCRERWHNHLNPEVKKSSWTE 64
Query: 72  QEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKL 115
           +E+RII + H++LGNRWA+IAK LPGRTDN VKN WNS IK+K+
Sbjct: 65  EEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/104 (53%), Positives = 77/104 (74%), Gaps = 3/104 (2%)
Query: 13  RGLWSPEEDEKLIKHVTTHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPDLKRGSFTE 71
           +G W+ EED+++I+HV  +G   WS + K L G  R GK CR RW N+L P++K+ S+TE
Sbjct: 27  KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 84
Query: 72  QEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKL 115
           +E+RII   H+ LGNRWA+IAK LPGRTDN VKN WNS +++K+
Sbjct: 85  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score =  115 bits (288), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 55/104 (52%), Positives = 76/104 (73%), Gaps = 3/104 (2%)
Query: 13  RGLWSPEEDEKLIKHVTTHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPDLKRGSFTE 71
           +G W+ EED+++IK V  +G   WS + K L G  R GK CR RW N+L P++K+ S+TE
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 72  QEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKL 115
           +E+RII   H+ LGNRWA+IAK LPGRTDN +KN WNS +++K+
Sbjct: 62  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score =  115 bits (288), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 55/104 (52%), Positives = 76/104 (73%), Gaps = 3/104 (2%)
Query: 13  RGLWSPEEDEKLIKHVTTHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPDLKRGSFTE 71
           +G W+ EED+++IK V  +G   WS + K L G  R GK CR RW N+L P++K+ S+TE
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 72  QEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKL 115
           +E+RII   H+ LGNRWA+IAK LPGRTDN +KN WNS +++K+
Sbjct: 62  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/104 (52%), Positives = 76/104 (73%), Gaps = 3/104 (2%)
Query: 13  RGLWSPEEDEKLIKHVTTHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPDLKRGSFTE 71
           +G W+ EED+++IK V  +G   WS + K L G  R GK CR RW N+L P++K+ S+TE
Sbjct: 58  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 115
Query: 72  QEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKL 115
           +E+RII   H+ LGNRWA+IAK LPGRTDN +KN WNS +++K+
Sbjct: 116 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 64/105 (60%), Gaps = 5/105 (4%)
Query: 13  RGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGL--QRCGKSCRLRWINYLRPDLKRGSFT 70
           +G ++  ED+ + ++V  +G  +W   P++      R  K CR RW N+L P + + ++T
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 71  EQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKL 115
            +E+  I   +  LG++W+ IAK +PGRTDN +KN WNS I K++
Sbjct: 59  PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/52 (59%), Positives = 43/52 (82%)
Query: 64  LKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKL 115
           +K+ S+TE+E+RII   H+ LGNRWA+IAK LPGRTDN +KN WNS +++K+
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 44/53 (83%)
Query: 63  DLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKL 115
           ++K+ S+TE+E+RI+   H+ LGNRWA+IAK LPGRTDN +KN WNS +++K+
Sbjct: 2   EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 11  VKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFT 70
            K+  ++PEEDE L + V  HG   W  +       R  + CR RW NYL P +    +T
Sbjct: 9   AKKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWT 66
Query: 71  EQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHNLI 128
            +E+ +++   +  G +WA IAK  PGRTD  +KN W   I  KL   GI P T  ++
Sbjct: 67  AEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW-VTISNKL---GI-PQTQQML 119

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 17  SPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERI 76
           + EED KL + V  +G   W  + +L  + R  + CR RW NY+ P L+   ++ +E+ +
Sbjct: 5   TEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPEEDML 63
Query: 77  IIDIHRILGNRWAQIAKHLPGRTDNEVKNFW 107
           +   +   G +W +I+K L  R+DN ++N W
Sbjct: 64  LDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPD 63
          +G W+ EED++LIK V  +G   WS + K L G  R GK CR RW N+L P+
Sbjct: 3  KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPD 63
          +G W+ EED+++IK V  +G   WS + K L G  R GK CR RW N+L P+
Sbjct: 3  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPD 63
          +G W+ EED+++I+ V  +G   WS + K L G  R GK CR RW N+L P+
Sbjct: 3  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	338
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	2e-69
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	1e-67
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	3e-67
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	6e-61
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-58
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	1e-54
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	1e-26
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	7e-24
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	4e-06
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	8e-21
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	1e-06
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	2e-16
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	2e-05
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	1e-11
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-10
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	8e-06
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	1e-08
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	3e-08
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	4e-08
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	6e-04
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	4e-08
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	6e-08
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	1e-07
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	3e-07
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	9e-07
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	2e-06
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	4e-06
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	3e-04
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	9e-06
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	4e-05
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	6e-04

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  210 bits (538), Expect = 2e-69
 Identities = 53/106 (50%), Positives = 76/106 (71%), Gaps = 1/106 (0%)

Query: 10  KVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSF 69
           ++ +G W+ EED+++IK V  +G   WS + K     R GK CR RW N+L P++K+ S+
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 59

Query: 70  TEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKL 115
           TE+E+RII   H+ LGNRWA+IAK LPGRTDN +KN WNS +++K+
Sbjct: 60  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  207 bits (529), Expect = 1e-67
 Identities = 54/108 (50%), Positives = 77/108 (71%), Gaps = 1/108 (0%)

Query: 8   KQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG 67
             ++ +G W+ EED+++I+HV  +G   WS + K     R GK CR RW N+L P++K+ 
Sbjct: 22  NPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKT 80

Query: 68  SFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKL 115
           S+TE+E+RII   H+ LGNRWA+IAK LPGRTDN VKN WNS +++K+
Sbjct: 81  SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  206 bits (526), Expect = 3e-67
 Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 1/114 (0%)

Query: 13  RGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQ 72
           +G ++  ED+ + ++V  +G  +W  +       R  K CR RW N+L P + + ++T +
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 73  EERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHN 126
           E+  I   +  LG++W+ IAK +PGRTDN +KN WNS I K++           
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILL 114

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  190 bits (484), Expect = 6e-61
 Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 7   SKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKR 66
           + +  K+  ++PEEDE L + V  HG   W  +       R  + CR RW NYL P +  
Sbjct: 5   NLKAAKKQKFTPEEDEMLKRAVAQHGSD-WKMIAATFP-NRNARQCRDRWKNYLAPSISH 62

Query: 67  GSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTH 125
             +T +E+ +++   +  G +WA IAK  PGRTD  +KN W +   K  I +      H
Sbjct: 63  TPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQMLEH 121

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  185 bits (471), Expect = 2e-58
 Identities = 53/106 (50%), Positives = 76/106 (71%), Gaps = 1/106 (0%)

Query: 10  KVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSF 69
           ++ +G W+ EED+++IK V  +G   WS + K     R GK CR RW N+L P++K+ S+
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 113

Query: 70  TEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKL 115
           TE+E+RII   H+ LGNRWA+IAK LPGRTDN +KN WNS +++K+
Sbjct: 114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  173 bits (440), Expect = 1e-54
 Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 1/103 (0%)

Query: 13  RGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQ 72
           +  ++ EED KL + V  +G   W  + +L    R  + CR RW NY+ P L+   ++ +
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPE 59

Query: 73  EERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKL 115
           E+ ++   +   G +W +I+K L  R+DN ++N W    + + 
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRA 102

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 98.7 bits (247), Expect = 1e-26
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 11 VKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD 63
          + +G W+ EED++LIK V  +G   WS + K     R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 92.0 bits (229), Expect = 7e-24
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 7  SKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKR 66
          S    K G+W   EDE L   V  +G   WS +  L   ++  K C+ RW  +L P +K+
Sbjct: 3  SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKK 61

Query: 67 GSFTEQEE 74
            ++    
Sbjct: 62 TEWSGPSS 69

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 43.0 bits (102), Expect = 4e-06
 Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 61  RPDLKRGSFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTD 100
               K G +   E+ I+       G N+W++IA  L  ++ 
Sbjct: 4   GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSA 44

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 83.4 bits (207), Expect = 8e-21
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 11 VKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD 63
          + +  W+ EEDEKL K V  +G   W  +       R    C+ RW   L P+
Sbjct: 1  LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 64  LKRGSFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTD 100
           L +  +T +E+  +  +    G + W  IA +LP RTD
Sbjct: 1   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTD 38

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 71.5 bits (176), Expect = 2e-16
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 7  SKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSV-PKLAGLQRCGKSCRLRWINYLRPDLK 65
          S     +  W+ EEDE+L   V   G   W  +        R  + C+ RW+  L     
Sbjct: 2  SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN--RTDQQCQYRWLRVLSGPSS 59

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 61  RPDLKRGSFTEQEERIIIDIHRILGNR-WAQIAKHLPGRTD 100
                +  +T +E+  +  + R  G + W  +A H P RTD
Sbjct: 3   SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTD 43

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 58.1 bits (141), Expect = 1e-11
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 12 KRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQ-RCGKSCRLRWINYLR 61
          KR  W  EED+ L   V  +G G+WS +        R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 55.6 bits (134), Expect = 1e-10
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 7  SKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKR 66
          S    K+  WS EE+EKL+          W ++  + G  R    C   +   L    +R
Sbjct: 3  SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAPIIG--RTAAQCLEHYEFLLDKAAQR 59

Query: 67 GS 68
           S
Sbjct: 60 DS 61

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 42.1 bits (99), Expect = 8e-06
 Identities = 10/52 (19%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 64  LKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKL 115
            K+  ++ +EE  ++ + +++  +W  IA  + GRT  +    +   + K  
Sbjct: 7   GKKTEWSREEEEKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHYEFLLDKAA 57

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 51.6 bits (123), Expect = 1e-08
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 9/96 (9%)

Query: 7   SKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQ---RCGKSCRLRWINYLR-- 61
             Q+  R  +S  E E L++ V   G G W  V   A      R     + +W   +   
Sbjct: 7   DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66

Query: 62  ---PDLKRGSFTEQEERI-IIDIHRILGNRWAQIAK 93
              P  +RG    QE    +++ H     +  Q  +
Sbjct: 67  KISPQQRRGEPVPQELLNRVLNAHGYWTQQQMQQLQ 102

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 48.9 bits (117), Expect = 3e-08
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 7  SKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQ-RCGKSCRLRWINYLRPDL 64
          +    K+  W+ EE E +   V  +G G+W+++ K      R     + RW    R  +
Sbjct: 5  TTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 48.5 bits (116), Expect = 4e-08
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 12 KRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQ-RCGKSCRLRWINYLRPDL 64
          K+  W+ EE E +   V  +G G+W+++ K      R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 36.5 bits (85), Expect = 6e-04
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 65  KRGSFTEQEERIIIDIHRILGN-RWAQIAKHLP--GRTDNEVKNFWNSCIKKKL 115
           K+  +T +E   +    +  G   WA I+K+ P   RT   +K+ W +  +  +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 50.1 bits (119), Expect = 4e-08
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 9/92 (9%)

Query: 7   SKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLA---GLQRCGKSCRLRWINYLR-- 61
             Q+  R  ++  E E L++ V   G G W  V   A      R     + +W   +   
Sbjct: 25  FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84

Query: 62  ---PDLKRGSFTEQE-ERIIIDIHRILGNRWA 89
              P  +RG+   QE    ++          +
Sbjct: 85  SIAPQQRRGAPVPQELLDRVLAAQAYWSVDSS 116

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 49.8 bits (118), Expect = 6e-08
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 9/92 (9%)

Query: 7   SKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQ---RCGKSCRLRWINYLR-- 61
             Q+  R  +S  E E L++ V   G G W  V   A      R     + +W   +   
Sbjct: 11  LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70

Query: 62  ---PDLKRGSFTEQE-ERIIIDIHRILGNRWA 89
              P  +RG    Q+    ++  H     +  
Sbjct: 71  SIAPQQRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 47.1 bits (112), Expect = 1e-07
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 8  KQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQ-RCGKSCRLRWINYLRPDL 64
           +  KR  W  EED+ L   V  +G G+WS +        R     + RW    +  L
Sbjct: 5  HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL 62

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 46.5 bits (110), Expect = 3e-07
 Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 11/83 (13%)

Query: 16 WSPEEDEKLIKHVTTHGHGSWSSVPKLA---GLQRCGKSCRLRWINYLR-----PDLKRG 67
          +S  E E L++ V   G G W  V   A      R     + +W   +      P  +RG
Sbjct: 3  FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 68 SFTEQEERIIIDIHRILGNRWAQ 90
              Q+   ++D        W+Q
Sbjct: 63 EPVPQD---LLDRVLAAHAYWSQ 82

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 45.3 bits (107), Expect = 9e-07
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 53  RLRWINYLRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIK 112
                +  R +L    +TE+E           G  W+ IA+ +  +T ++ KNF+ +  K
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKK 62

Query: 113 K 113
           +
Sbjct: 63  R 63

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 12 KRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG 67
            G ++PEE EKL +    HG   W+++    G  R   S + R    ++     G
Sbjct: 22 HVGKYTPEEIEKLKELRIKHG-NDWATIGAALG--RSASSVKDRC-RLMKDTCNTG 73

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 42.7 bits (101), Expect = 4e-06
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 7  SKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
          S        W+ +E+  L++ V   G G+W  V       +  + C   ++ Y 
Sbjct: 2  SSGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYF 54

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 65  KRGSFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWNSC 110
              S+T QEE  +++     G   W  +A  +  +T  E +  +   
Sbjct: 7   GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY 53

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 45.4 bits (106), Expect = 9e-06
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 11/95 (11%)

Query: 12  KRGLWSPEEDEKLIKHVTTH-----GHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKR 66
            +  ++ EEDE ++  V  +      H  +  +         G S R R+  YL   L+ 
Sbjct: 7   NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEY 65

Query: 67  GSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDN 101
               ++  +++ D     GN      K LP     
Sbjct: 66  VYEVDKFGKLVRDDD---GNLIK--TKVLPPSIKR 95

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 44.6 bits (104), Expect = 2e-05
 Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 6/60 (10%)

Query: 62  PDLKRGSFTEQEERIIIDIHRILGNR------WAQIAKHLPGRTDNEVKNFWNSCIKKKL 115
           P   + SFT++E+  I+D+ R    R      + +I+ ++P  T N +++ +   + K+L
Sbjct: 4   PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 63

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 57/443 (12%), Positives = 117/443 (26%), Gaps = 160/443 (36%)

Query: 11  VKRGLWSPEEDEKLIKH---------VTTHGHGSWSSVPKLAGLQRCGKSC--------- 52
            K  +   +   KL +          V   G         + G    GK+          
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDG---------VLG---SGKTWVALDVCLSY 174

Query: 53  --------RLRWIN-----------------YLRPDLKRGSFTEQEERIIIDIHR----- 82
                   ++ W+N                   + D    S ++    I + IH      
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 83  --------------ILGNRW-AQIAKHLPGR------T-DNEVKNFWNSCIKKKLIARGI 120
                         +L N   A+              T   +V +F ++     +    +
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS---L 291

Query: 121 DPNTHNLISPTS---CAQIYTNSTYSNACNKLPHQVQLSNSPVFLADSHMKEIIKSPHLT 177
           D ++  L          + Y +         LP +V L+ +P     S + E I+    T
Sbjct: 292 DHHSMTLTPDEVKSLLLK-YLD----CRPQDLPREV-LTTNP--RRLSIIAESIRDGLAT 343

Query: 178 S-PFNNVSSLDLINTTQYSISPSILHEISSLLPASEYQN--------------PNQ---- 218
              + +V+   L    + S+         ++L  +EY+               P      
Sbjct: 344 WDNWKHVNCDKLTTIIESSL---------NVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394

Query: 219 FWT-LPEQNPHASSMESANPC-GFGLIDENN--------GLLGGSCFEITETDAGKETML 268
            W  + + +     M   N    + L+++           +      E+       E  L
Sbjct: 395 IWFDVIKSDV----MVVVNKLHKYSLVEKQPKESTISIPSIY----LELKVKLE-NEYAL 445

Query: 269 QPLMIDAQQEKVCEVGNGKITNELN--------------DNGQNMNALFERA--DFDFDD 312
              ++D          +  I   L+              ++ + M  LF     DF F +
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT-LFRMVFLDFRFLE 504

Query: 313 HLVESTALSCGMYCNFSPIMNQF 335
             +   + +     +    + Q 
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQL 527

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 51/319 (15%), Positives = 86/319 (26%), Gaps = 109/319 (34%)

Query: 10  KVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLA------GLQRCGKSCR---LRWINY- 59
                L   E    L+K++          +P+         L    +S R     W N+ 
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDC----RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348

Query: 60  -----------------LRPDLKRGSFTEQEERIII---DIH---RILGNRWAQIAKHLP 96
                            L P   R  F    +R+ +     H    +L   W  +     
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMF----DRLSVFPPSAHIPTILLSLIWFDV----- 399

Query: 97  GRTDNEVKNFWNSCIKKKLIARGIDPNTHNLISPTSCAQIYTNSTYSNACNKLPHQVQLS 156
               ++V    N   K  L+ +    +T           I   S Y     KL ++  L 
Sbjct: 400 --IKSDVMVVVNKLHKYSLVEKQPKEST-----------ISIPSIYLELKVKLENEYALH 446

Query: 157 NSPV-------------------------FLADSHMKEIIKSPHLTSPFNNVSSLDL--- 188
            S V                          +   H+K I       + F  V  LD    
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH-HLKNIEHP-ERMTLFRMV-FLDFRFL 503

Query: 189 -----INTTQYSISPSILHEISSLLPASEYQNPN------------QFWTLPEQNPHASS 231
                 ++T ++ S SIL+ +  L     Y   N             F  LP+   +   
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF--LPKIEENLIC 561

Query: 232 MESANPCGFGLIDENNGLL 250
            +  +     L+ E+  + 
Sbjct: 562 SKYTDLLRIALMAEDEAIF 580

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 40.1 bits (94), Expect = 4e-05
 Identities = 12/44 (27%), Positives = 20/44 (45%)

Query: 16 WSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59
          W  +E+  LI    T G G+W+ +    G  R  + CR  ++  
Sbjct: 12 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 37.1 bits (86), Expect = 6e-04
 Identities = 13/54 (24%), Positives = 23/54 (42%)

Query: 61  RPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKK 114
                   +T +E+ +        G RW +I+K +  RT  +VK++     K K
Sbjct: 4   GSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNK 57

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	338
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	100.0
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	100.0
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	100.0
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.98
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.98
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.96
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.86
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.82
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.73
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.72
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.7
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.69
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.69
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.67
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.67
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.64
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.64
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.62
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.62
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.61
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.6
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.6
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.58
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.57
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.55
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.55
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.55
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.53
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.51
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.49
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.49
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.49
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.48
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.48
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.48
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.2
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.46
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.43
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.41
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.39
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.37
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.36
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.34
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.32
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.29
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.27
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.26
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.26
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.26
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.24
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.23
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.22
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.84
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.2
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.18
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.96
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.96
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.94
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.81
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.72
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.65
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.62
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.48
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.44
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.41
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.35
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.29
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.13
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.12
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	98.08
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.07
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.07
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.84
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.8
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	97.77
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.75
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.58
2crg_A	70	Metastasis associated protein MTA3; transcription	97.57
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.38
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.08
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.06
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	96.94
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	96.5
2crg_A	70	Metastasis associated protein MTA3; transcription	96.47
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	96.29
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.23
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	96.15
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	95.03
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	94.86
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	94.82
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	92.26
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	92.08
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	91.82
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	91.57
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	81.68

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=100.00  E-value=6.3e-34  Score=232.36  Aligned_cols=105  Identities=50%  Similarity=0.936  Sum_probs=99.6

Q ss_pred             CCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHHcCCCHH
Q 039070           10 KVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGNRWA   89 (338)
Q Consensus        10 ~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G~kWs   89 (338)
                      .+++|+||+|||++|+++|++||.++|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|++++.+||++|+
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~   79 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA   79 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence            37899999999999999999999889999999998 99999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCCHHHHHHHHHHHhhhHH
Q 039070           90 QIAKHLPGRTDNEVKNFWNSCIKKKL  115 (338)
Q Consensus        90 ~IA~~LpgRT~~qcKnRW~slLkkkl  115 (338)
                      .||++|||||+++|++||+.++++++
T Consensus        80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~  105 (105)
T 1gv2_A           80 EIAKLLPGRTDNAIKNHWNSTMRRKV  105 (105)
T ss_dssp             HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999998763

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=100.00  E-value=2.6e-33  Score=237.96  Aligned_cols=108  Identities=34%  Similarity=0.669  Sum_probs=103.9

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 039070           13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGNRWAQIA   92 (338)
Q Consensus        13 kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G~kWs~IA   92 (338)
                      ||+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.+++|+||+|||++|+++|.+||++|+.||
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia   80 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA   80 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            79999999999999999999889999999998 99999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCHHHHHHHHHHHhhhHHHhCCCC
Q 039070           93 KHLPGRTDNEVKNFWNSCIKKKLIARGID  121 (338)
Q Consensus        93 ~~LpgRT~~qcKnRW~slLkkkl~~~g~~  121 (338)
                      ++|+|||+++|++||++++++++....++
T Consensus        81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~  109 (131)
T 3zqc_A           81 KLIPGRTDNAIKNRWNSSISKRISTNSNH  109 (131)
T ss_dssp             TTSTTCCHHHHHHHHHHTTGGGCCCCTTS
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhhcCCCc
Confidence            99999999999999999999987766554

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=100.00  E-value=1.8e-33  Score=231.41  Aligned_cols=103  Identities=28%  Similarity=0.568  Sum_probs=99.7

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 039070           13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGNRWAQIA   92 (338)
Q Consensus        13 kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G~kWs~IA   92 (338)
                      ||+||+|||++|+++|++||.++|..||+.|| +|+++||++||.++|+|.+++|+||+|||++|+++|.+||++|+.||
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia   79 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS   79 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence            68999999999999999999889999999998 99999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCHHHHHHHHHHHhhhHHH
Q 039070           93 KHLPGRTDNEVKNFWNSCIKKKLI  116 (338)
Q Consensus        93 ~~LpgRT~~qcKnRW~slLkkkl~  116 (338)
                      ++|||||+++|++||+.++++..+
T Consensus        80 ~~l~gRt~~~~k~rw~~l~r~~~~  103 (107)
T 2k9n_A           80 KFLKNRSDNNIRNRWMMIARHRAK  103 (107)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHHHS
T ss_pred             HHCCCCCHHHHHHHHHHHHhhHHH
Confidence            999999999999999999987654

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.98  E-value=1.9e-33  Score=237.47  Aligned_cols=111  Identities=50%  Similarity=0.954  Sum_probs=101.9

Q ss_pred             CCCcc------CCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHHHHH
Q 039070            4 NCCSK------QKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERII   77 (338)
Q Consensus         4 ~~c~K------~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~L   77 (338)
                      +|.++      |.+++|+||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|+|.+++|+||+|||++|
T Consensus        12 qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L   90 (128)
T 1h8a_C           12 QCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRII   90 (128)
T ss_dssp             ----------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHH
T ss_pred             HHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHH
Confidence            56665      788999999999999999999999889999999998 99999999999999999999999999999999


Q ss_pred             HHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHH
Q 039070           78 IDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKL  115 (338)
Q Consensus        78 l~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkkkl  115 (338)
                      ++++++||++|+.||++|||||+++|++||+.++++++
T Consensus        91 ~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~  128 (128)
T 1h8a_C           91 YQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV  128 (128)
T ss_dssp             HHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999999999998753

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.98  E-value=6.7e-33  Score=234.21  Aligned_cols=105  Identities=35%  Similarity=0.700  Sum_probs=101.2

Q ss_pred             ccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHHcCC
Q 039070            7 SKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGN   86 (338)
Q Consensus         7 ~K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G~   86 (338)
                      .+++.++|+||+|||++|+++|++||. +|..||+.|+ +|+++||++||.++|+|.+++|+||+|||++|++++.+||+
T Consensus         5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~   82 (126)
T 3osg_A            5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR   82 (126)
T ss_dssp             C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence            467899999999999999999999997 9999999998 99999999999999999999999999999999999999999


Q ss_pred             CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070           87 RWAQIAKHLPGRTDNEVKNFWNSCIKK  113 (338)
Q Consensus        87 kWs~IA~~LpgRT~~qcKnRW~slLkk  113 (338)
                      +|+.||++|+|||+++||+||+.++++
T Consensus        83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k  109 (126)
T 3osg_A           83 QWAIIAKFFPGRTDIHIKNRWVTISNK  109 (126)
T ss_dssp             CHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999998876

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.97  E-value=9.4e-32  Score=234.47  Aligned_cols=119  Identities=29%  Similarity=0.623  Sum_probs=75.9

Q ss_pred             CCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHHcCC-CHH
Q 039070           11 VKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGN-RWA   89 (338)
Q Consensus        11 lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G~-kWs   89 (338)
                      +++++||+|||++|+++|++||.++|..||+.|+ +|+++||++||.++|+|.+++|+||+|||++|+++|.+||. +|+
T Consensus         4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~   82 (159)
T 1h89_C            4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS   82 (159)
T ss_dssp             ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence            7899999999999999999999889999999998 99999999999999999999999999999999999999996 699


Q ss_pred             HHHhhCCCCCHHHHHHHHHHHhhhHHHhCCCCcCCCCCCCC
Q 039070           90 QIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHNLISP  130 (338)
Q Consensus        90 ~IA~~LpgRT~~qcKnRW~slLkkkl~~~g~~~~e~~~l~p  130 (338)
                      .||++|+|||+.+|++||+++|.+.+.++.|+++++..|..
T Consensus        83 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~  123 (159)
T 1h89_C           83 VIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ  123 (159)
T ss_dssp             HHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHH
Confidence            99999999999999999999999999999999998876643

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.96  E-value=1e-30  Score=227.87  Aligned_cols=107  Identities=50%  Similarity=0.921  Sum_probs=102.1

Q ss_pred             cCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHHcCCC
Q 039070            8 KQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGNR   87 (338)
Q Consensus         8 K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G~k   87 (338)
                      ++.+++|+||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||++|++++++||++
T Consensus        53 ~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~  131 (159)
T 1h89_C           53 NPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR  131 (159)
T ss_dssp             CTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred             CCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCC
Confidence            3788999999999999999999999878999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCHHHHHHHHHHHhhhHH
Q 039070           88 WAQIAKHLPGRTDNEVKNFWNSCIKKKL  115 (338)
Q Consensus        88 Ws~IA~~LpgRT~~qcKnRW~slLkkkl  115 (338)
                      |+.||++|||||+++||+||+.++|+++
T Consensus       132 W~~Ia~~l~gRt~~~~knr~~~~~r~~~  159 (159)
T 1h89_C          132 WAEIAKLLPGRTDNAIKNHWNSTMRRKV  159 (159)
T ss_dssp             HHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            9999999999999999999999998753

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.86  E-value=9.7e-23  Score=171.84  Aligned_cols=91  Identities=25%  Similarity=0.595  Sum_probs=66.0

Q ss_pred             ccccccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHHHh
Q 039070           39 VPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGN-RWAQIAKHLPGRTDNEVKNFWNSCIKKKLIA  117 (338)
Q Consensus        39 IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~  117 (338)
                      ||+.|+ +|++.||++||.++|+|.+++|+||+|||++|+++|.+||. +|..||..|+|||+.+|++||+++|.+.+.+
T Consensus         1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~   79 (128)
T 1h8a_C            1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK   79 (128)
T ss_dssp             ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred             CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence            788888 99999999999999999999999999999999999999996 6999999999999999999999999999999


Q ss_pred             CCCCcCCCCCCCC
Q 039070          118 RGIDPNTHNLISP  130 (338)
Q Consensus       118 ~g~~~~e~~~l~p  130 (338)
                      +.|+++|+..|..
T Consensus        80 ~~WT~eEd~~L~~   92 (128)
T 1h8a_C           80 TSWTEEEDRIIYQ   92 (128)
T ss_dssp             SCCCHHHHHHHHH
T ss_pred             ccCCHHHHHHHHH
Confidence            9999999877643

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=7.8e-22  Score=150.83  Aligned_cols=67  Identities=30%  Similarity=0.649  Sum_probs=64.5

Q ss_pred             ccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHH
Q 039070            7 SKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEE   74 (338)
Q Consensus         7 ~K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EED   74 (338)
                      +.+.+++|+||+|||++|+++|++||.++|..||+.|+ +|+++||++||.++|+|.+++++||+|||
T Consensus         3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            45789999999999999999999999889999999999 99999999999999999999999999997

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.73  E-value=2.3e-18  Score=160.13  Aligned_cols=106  Identities=17%  Similarity=0.294  Sum_probs=92.6

Q ss_pred             cCCCCccCCCHHHHHHHHHHHHHhCCCC-----cccccccccccccCccccceeecccCCCCC-----------------
Q 039070            8 KQKVKRGLWSPEEDEKLIKHVTTHGHGS-----WSSVPKLAGLQRCGKSCRLRWINYLRPDLK-----------------   65 (338)
Q Consensus         8 K~~lkkg~WT~EEDe~L~~lV~k~G~~n-----W~~IAk~lg~~Rt~kQCr~RW~n~L~p~lk-----------------   65 (338)
                      .+.+++++||+|||++|+++|+++|..+     |.+||+.|+ ||++.|||.||+.+|++.+.                 
T Consensus         3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G   81 (246)
T 1ign_A            3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG   81 (246)
T ss_dssp             -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence            4678899999999999999999998642     999999999 99999999999999999986                 


Q ss_pred             ------------CCCCChHHHHHHHHHHHH-c------------------------------------------------
Q 039070           66 ------------RGSFTEQEERIIIDIHRI-L------------------------------------------------   84 (338)
Q Consensus        66 ------------kg~WT~EEDe~Ll~lv~~-~------------------------------------------------   84 (338)
                                  +.+||.+||-.|+..+++ +                                                
T Consensus        82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  161 (246)
T 1ign_A           82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR  161 (246)
T ss_dssp             CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred             CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence                        899999999999998877 1                                                


Q ss_pred             -----CC----CHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 039070           85 -----GN----RWAQIAKHLPGRTDNEVKNFWNSCIKKK  114 (338)
Q Consensus        85 -----G~----kWs~IA~~LpgRT~~qcKnRW~slLkkk  114 (338)
                           |.    .|..||+.+|+||.+++|+||+..++..
T Consensus       162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                 11    6999999999999999999999988764

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.72  E-value=3.6e-18  Score=132.88  Aligned_cols=59  Identities=22%  Similarity=0.313  Sum_probs=47.8

Q ss_pred             cceeecccCCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 039070           53 RLRWINYLRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIK  112 (338)
Q Consensus        53 r~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLk  112 (338)
                      .-||.++|+|.+++|+||+|||++|++++++||++|+.||+.| |||+++||+||+.+.+
T Consensus        10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~   68 (73)
T 2llk_A           10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD   68 (73)
T ss_dssp             ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred             CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence            3589999999999999999999999999999999999999999 9999999999987543

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.70  E-value=2.4e-17  Score=126.77  Aligned_cols=66  Identities=26%  Similarity=0.350  Sum_probs=60.3

Q ss_pred             cCCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCCCCcCCCC
Q 039070           60 LRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHN  126 (338)
Q Consensus        60 L~p~lkkg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~~g~~~~e~~  126 (338)
                      .+|.+++++||+|||++|+++|.+||++|..||++|+|||+++||+||+.++++.++. |+++.+..
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~s   68 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETPN   68 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCSC
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCccc
Confidence            5789999999999999999999999999999999999999999999999999987666 77766544

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.69  E-value=2.8e-18  Score=145.19  Aligned_cols=83  Identities=22%  Similarity=0.354  Sum_probs=78.0

Q ss_pred             ccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccc----cccccCccccceeecccC-----CCCCCC-CCChHHHHH
Q 039070            7 SKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLA----GLQRCGKSCRLRWINYLR-----PDLKRG-SFTEQEERI   76 (338)
Q Consensus         7 ~K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l----g~~Rt~kQCr~RW~n~L~-----p~lkkg-~WT~EEDe~   76 (338)
                      -+++.++++||+|||+.|+++|++||.|+|..|++.+    + +|++.+|++||+++++     |.+++| +|+++|+.+
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r   89 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR   89 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence            3578999999999999999999999999999999975    4 8999999999999998     999999 999999999


Q ss_pred             HHHHHHHcCCCHHH
Q 039070           77 IIDIHRILGNRWAQ   90 (338)
Q Consensus        77 Ll~lv~~~G~kWs~   90 (338)
                      |+.++..||++|++
T Consensus        90 v~~~h~~~gn~~~~  103 (121)
T 2juh_A           90 VLAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHccchhc
Confidence            99999999999987

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=3.1e-17  Score=125.28  Aligned_cols=65  Identities=18%  Similarity=0.335  Sum_probs=61.9

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCCCCcCCC
Q 039070           61 RPDLKRGSFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTH  125 (338)
Q Consensus        61 ~p~lkkg~WT~EEDe~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~~g~~~~e~  125 (338)
                      .|.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|++.++++.|+++++
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            4678999999999999999999999 7999999999999999999999999999999999998876

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=7.3e-17  Score=121.86  Aligned_cols=60  Identities=17%  Similarity=0.347  Sum_probs=56.9

Q ss_pred             ccCCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCC
Q 039070           59 YLRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARG  119 (338)
Q Consensus        59 ~L~p~lkkg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~~g  119 (338)
                      +|+|.+++++||+|||++|++++++||++|.+||+ ++|||+.|||+||+.++++.+++..
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence            79999999999999999999999999999999999 8899999999999999999877653

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.67  E-value=1.5e-17  Score=141.02  Aligned_cols=80  Identities=23%  Similarity=0.292  Sum_probs=73.6

Q ss_pred             cCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccc---ccccCccccceeeccc-----CCCCCCCCCChHH-HHHHH
Q 039070            8 KQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAG---LQRCGKSCRLRWINYL-----RPDLKRGSFTEQE-ERIII   78 (338)
Q Consensus         8 K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg---~~Rt~kQCr~RW~n~L-----~p~lkkg~WT~EE-De~Ll   78 (338)
                      +.+.++++||+|||+.|+++|++||.|+|..|++..+   .+|++.||++||++++     +|.+++|.|+++| +.+|+
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~  105 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL  105 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence            4578899999999999999999999999999998641   3899999999999999     8999999999999 89999


Q ss_pred             HHHHHcCCC
Q 039070           79 DIHRILGNR   87 (338)
Q Consensus        79 ~lv~~~G~k   87 (338)
                      +++..||++
T Consensus       106 ~~h~~~g~~  114 (122)
T 2roh_A          106 AAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHhhH
Confidence            999999974

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.64  E-value=3e-17  Score=121.65  Aligned_cols=58  Identities=26%  Similarity=0.495  Sum_probs=54.9

Q ss_pred             ccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCC
Q 039070            7 SKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLK   65 (338)
Q Consensus         7 ~K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lk   65 (338)
                      ..+.+++++||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|+|.++
T Consensus         2 s~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            2 SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             CSCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence            46789999999999999999999999889999999998 99999999999999999875

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.64  E-value=3.9e-17  Score=117.83  Aligned_cols=52  Identities=44%  Similarity=0.831  Sum_probs=49.7

Q ss_pred             CCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCC
Q 039070           11 VKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD   63 (338)
Q Consensus        11 lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~   63 (338)
                      +++|+||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|+|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            5799999999999999999999888999999998 999999999999999984

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.62  E-value=3.2e-16  Score=116.15  Aligned_cols=55  Identities=22%  Similarity=0.453  Sum_probs=51.4

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHHhhhHH
Q 039070           61 RPDLKRGSFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWNSCIKKKL  115 (338)
Q Consensus        61 ~p~lkkg~WT~EEDe~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~slLkkkl  115 (338)
                      +|.+++++||+|||++|+++|.+|| ++|+.||++|+|||+.|||+||+++|++.+
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i   58 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS   58 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence            5789999999999999999999999 599999999999999999999999987643

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.62  E-value=5e-17  Score=123.88  Aligned_cols=63  Identities=25%  Similarity=0.366  Sum_probs=58.6

Q ss_pred             cCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccc-cccCccccceeecccCCCCCCCCCC
Q 039070            8 KQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGL-QRCGKSCRLRWINYLRPDLKRGSFT   70 (338)
Q Consensus         8 K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~-~Rt~kQCr~RW~n~L~p~lkkg~WT   70 (338)
                      +++.++++||+|||++|+++|++||.++|..||+.|++ +|++.||++||.++|+|.+.++..+
T Consensus         5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            46789999999999999999999998899999999976 8999999999999999999988764

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.61  E-value=5.8e-17  Score=116.80  Aligned_cols=52  Identities=33%  Similarity=0.698  Sum_probs=48.4

Q ss_pred             CCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCC
Q 039070           11 VKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD   63 (338)
Q Consensus        11 lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~   63 (338)
                      +++++||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            5789999999999999999999889999999998 999999999999999984

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.60  E-value=9.3e-16  Score=110.45  Aligned_cols=50  Identities=26%  Similarity=0.531  Sum_probs=46.2

Q ss_pred             CCCCCCChHHHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070           64 LKRGSFTEQEERIIIDIHRILGN-RWAQIAKHLPGRTDNEVKNFWNSCIKK  113 (338)
Q Consensus        64 lkkg~WT~EEDe~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~slLkk  113 (338)
                      +++++||+|||++|+++|.+||. +|+.||++|+|||+.||++||+++|++
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            47899999999999999999998 899999999999999999999999864

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.60  E-value=1.6e-15  Score=115.53  Aligned_cols=62  Identities=26%  Similarity=0.356  Sum_probs=55.9

Q ss_pred             ccCCCCCCCCCChHHHHHHHHHHHHcC-CCHHHHHhhCC--CCCHHHHHHHHHHHhhhHHHhCCC
Q 039070           59 YLRPDLKRGSFTEQEERIIIDIHRILG-NRWAQIAKHLP--GRTDNEVKNFWNSCIKKKLIARGI  120 (338)
Q Consensus        59 ~L~p~lkkg~WT~EEDe~Ll~lv~~~G-~kWs~IA~~Lp--gRT~~qcKnRW~slLkkkl~~~g~  120 (338)
                      ...+..++++||+|||++|+++|.+|| ++|+.||++|+  |||+.|||+||+++|++.+.+...
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~   67 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDS   67 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence            356778899999999999999999999 69999999999  999999999999999987766543

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.58  E-value=1.7e-15  Score=109.19  Aligned_cols=50  Identities=32%  Similarity=0.723  Sum_probs=47.0

Q ss_pred             CCCCCCChHHHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070           64 LKRGSFTEQEERIIIDIHRILGN-RWAQIAKHLPGRTDNEVKNFWNSCIKK  113 (338)
Q Consensus        64 lkkg~WT~EEDe~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~slLkk  113 (338)
                      +++|+||+|||++|+++|.+||. +|+.||++|+|||+.|||+||+++|++
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            57899999999999999999997 699999999999999999999998864

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.57  E-value=3.9e-15  Score=107.94  Aligned_cols=49  Identities=27%  Similarity=0.430  Sum_probs=46.5

Q ss_pred             CCCCCChHHHHHHHHHHHHcC-CCHHHHHhhCC--CCCHHHHHHHHHHHhhh
Q 039070           65 KRGSFTEQEERIIIDIHRILG-NRWAQIAKHLP--GRTDNEVKNFWNSCIKK  113 (338)
Q Consensus        65 kkg~WT~EEDe~Ll~lv~~~G-~kWs~IA~~Lp--gRT~~qcKnRW~slLkk  113 (338)
                      ++++||+|||++|+++|.+|| ++|+.||..|+  |||+.||++||++++|.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            579999999999999999999 69999999999  99999999999999875

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.55  E-value=6.9e-16  Score=114.79  Aligned_cols=56  Identities=20%  Similarity=0.491  Sum_probs=52.6

Q ss_pred             ccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCC
Q 039070            7 SKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD   63 (338)
Q Consensus         7 ~K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~   63 (338)
                      +.+.+++++||+|||++|+++|++||.++|.+||+.|+ +|++.||++||.++|.+.
T Consensus         2 ss~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            2 SSGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence            45789999999999999999999999889999999998 999999999999999865

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.55  E-value=4.2e-16  Score=117.98  Aligned_cols=56  Identities=25%  Similarity=0.447  Sum_probs=49.6

Q ss_pred             CCCccCCCHHHHHHHHHHHHHhCCCCccccccccc-ccccCccccceeecccCCCCC
Q 039070           10 KVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAG-LQRCGKSCRLRWINYLRPDLK   65 (338)
Q Consensus        10 ~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg-~~Rt~kQCr~RW~n~L~p~lk   65 (338)
                      ..+|++||+|||++|+++|++||.++|..||+.++ .+|++.||++||+++++|.++
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            45789999999999999999999989999999754 279999999999999998774

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.55  E-value=7.1e-15  Score=109.29  Aligned_cols=53  Identities=19%  Similarity=0.314  Sum_probs=49.4

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070           61 RPDLKRGSFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWNSCIKK  113 (338)
Q Consensus        61 ~p~lkkg~WT~EEDe~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~slLkk  113 (338)
                      .+.+++++||+|||++|+++|.+|| ++|.+||++|+|||+.|||+||++++..
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence            3678899999999999999999999 7999999999999999999999988753

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=9.5e-15  Score=112.67  Aligned_cols=58  Identities=21%  Similarity=0.216  Sum_probs=53.2

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHcC------CCHHHHHhhCCCCCHHHHHHHHHHHhhhHHHhC
Q 039070           61 RPDLKRGSFTEQEERIIIDIHRILG------NRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIAR  118 (338)
Q Consensus        61 ~p~lkkg~WT~EEDe~Ll~lv~~~G------~kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~~  118 (338)
                      +|.+++++||+|||++|++++.+||      ++|.+||++|+|||+.||++||+.+|++.++.+
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g   66 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG   66 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999      689999999999999999999999998765443

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.51  E-value=1.9e-14  Score=108.92  Aligned_cols=52  Identities=25%  Similarity=0.408  Sum_probs=46.3

Q ss_pred             CCCCCCCChHHHHHHHHHHHHcC-CCHHHHHhhCC--CCCHHHHHHHHHHHhhhH
Q 039070           63 DLKRGSFTEQEERIIIDIHRILG-NRWAQIAKHLP--GRTDNEVKNFWNSCIKKK  114 (338)
Q Consensus        63 ~lkkg~WT~EEDe~Ll~lv~~~G-~kWs~IA~~Lp--gRT~~qcKnRW~slLkkk  114 (338)
                      ..++++||+|||++|+++|.+|| .+|+.||+.++  |||+.|||+||++++|..
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g   62 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   62 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence            35789999999999999999999 58999999965  999999999999988764

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=1.6e-15  Score=117.05  Aligned_cols=62  Identities=23%  Similarity=0.298  Sum_probs=57.5

Q ss_pred             ccCCCCccCCCHHHHHHHHHHHHHhCC-----CCcccccccccccccCccccceeecccCCCCCCCCC
Q 039070            7 SKQKVKRGLWSPEEDEKLIKHVTTHGH-----GSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSF   69 (338)
Q Consensus         7 ~K~~lkkg~WT~EEDe~L~~lV~k~G~-----~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~W   69 (338)
                      +++.+++++||+|||++|+++|++||.     .+|..||+.|+ +|++.||+.||++||.+.++.|..
T Consensus         2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~~   68 (75)
T 2yum_A            2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGIP   68 (75)
T ss_dssp             CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCCC
Confidence            689999999999999999999999996     68999999999 999999999999999988877654

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.49  E-value=8.8e-15  Score=123.19  Aligned_cols=70  Identities=17%  Similarity=0.377  Sum_probs=65.1

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCCCCcCCCCCCCC
Q 039070           61 RPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHNLISP  130 (338)
Q Consensus        61 ~p~lkkg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~~g~~~~e~~~l~p  130 (338)
                      .+..++|+||+|||++|+++|.+||.+|..||+.|+|||+.||+.||+++|.+.+.++.|+++|+..|-.
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~   75 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQ   75 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999999999999999999877643

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.49  E-value=2.7e-15  Score=108.78  Aligned_cols=50  Identities=30%  Similarity=0.477  Sum_probs=46.8

Q ss_pred             CccCCCHHHHHHHHHHHHHhCCCCcccccccccc-cccCccccceeecccC
Q 039070           12 KRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGL-QRCGKSCRLRWINYLR   61 (338)
Q Consensus        12 kkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~-~Rt~kQCr~RW~n~L~   61 (338)
                      ++|+||+|||++|+++|++||.++|..||+.+++ +|++.||++||.++++
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            5899999999999999999998899999999975 6999999999999875

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.48  E-value=9.3e-15  Score=118.77  Aligned_cols=68  Identities=25%  Similarity=0.569  Sum_probs=63.0

Q ss_pred             CCCCCCCChHHHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCCCCcCCCCCCCC
Q 039070           63 DLKRGSFTEQEERIIIDIHRILGN-RWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHNLISP  130 (338)
Q Consensus        63 ~lkkg~WT~EEDe~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~~g~~~~e~~~l~p  130 (338)
                      ++++|+||+|||++|+++|.+||. +|..||+.|+|||+.||+.||.++|.+.+.++.|+++++..|..
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~   69 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ   69 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHH
Confidence            378999999999999999999997 69999999999999999999999999999999999999877643

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.48  E-value=5.2e-14  Score=104.13  Aligned_cols=50  Identities=26%  Similarity=0.432  Sum_probs=46.4

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHcC-CCHHHHHhhCC-CCCHHHHHHHHHHHh
Q 039070           62 PDLKRGSFTEQEERIIIDIHRILG-NRWAQIAKHLP-GRTDNEVKNFWNSCI  111 (338)
Q Consensus        62 p~lkkg~WT~EEDe~Ll~lv~~~G-~kWs~IA~~Lp-gRT~~qcKnRW~slL  111 (338)
                      ..+.+++||+|||++|+++|.+|| ++|..||++|+ |||+.||++||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            456789999999999999999999 89999999999 999999999998764

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.48  E-value=5.4e-15  Score=109.45  Aligned_cols=52  Identities=23%  Similarity=0.484  Sum_probs=47.9

Q ss_pred             CCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeeccc
Q 039070            9 QKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL   60 (338)
Q Consensus         9 ~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L   60 (338)
                      ..+.+++||+|||++|+++|++||.++|..||+.||.+|+++||++||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            3467899999999999999999998899999999987899999999999875

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.20  E-value=4.3e-15  Score=118.94  Aligned_cols=56  Identities=25%  Similarity=0.301  Sum_probs=53.1

Q ss_pred             ccCCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 039070           59 YLRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKK  114 (338)
Q Consensus        59 ~L~p~lkkg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkkk  114 (338)
                      .+.|.+++|+||+|||++|+++|.+||++|+.||.+|+|||+++|++||++++++.
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            56789999999999999999999999999999999999999999999999998864

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=2e-15  Score=113.94  Aligned_cols=58  Identities=24%  Similarity=0.366  Sum_probs=52.9

Q ss_pred             cCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCC
Q 039070            8 KQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGS   68 (338)
Q Consensus         8 K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~   68 (338)
                      .|.+++++||+|||++|+++|+.||. +|.+||+ ++ +|++.||+.||.++|+|.++++.
T Consensus         4 ~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            4 GSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             SSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence            58899999999999999999999997 9999999 65 69999999999999998776653

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.43  E-value=4.1e-14  Score=115.88  Aligned_cols=64  Identities=22%  Similarity=0.426  Sum_probs=60.3

Q ss_pred             CCCCChHHHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCCCCcCCCCCCC
Q 039070           66 RGSFTEQEERIIIDIHRILGN-RWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHNLIS  129 (338)
Q Consensus        66 kg~WT~EEDe~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~~g~~~~e~~~l~  129 (338)
                      +|+||+|||++|+++|.+||. +|..||..|+|||+.||+.||.++|.+.+.++.|+++++..|.
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~   65 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLD   65 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHH
Confidence            689999999999999999996 7999999999999999999999999999999999999987664

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.41  E-value=1.5e-14  Score=111.10  Aligned_cols=58  Identities=22%  Similarity=0.354  Sum_probs=54.0

Q ss_pred             ccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCC
Q 039070            7 SKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKR   66 (338)
Q Consensus         7 ~K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkk   66 (338)
                      ..|.+++++||+|||++|+++|++||. +|..||+.|+ +|++.||+.||.++|++.++.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence            468899999999999999999999997 9999999998 999999999999999876665

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.39  E-value=9.6e-14  Score=114.84  Aligned_cols=80  Identities=25%  Similarity=0.333  Sum_probs=68.9

Q ss_pred             ccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccc---ccccCccccceeeccc-----CCCCCCCCCChHHHHH-H
Q 039070            7 SKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAG---LQRCGKSCRLRWINYL-----RPDLKRGSFTEQEERI-I   77 (338)
Q Consensus         7 ~K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg---~~Rt~kQCr~RW~n~L-----~p~lkkg~WT~EEDe~-L   77 (338)
                      .+++.++++||+|||++|+++|++||.|+|..|++.++   .+||..+|++||++++     +|.+++|.-+++|--. +
T Consensus         7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv   86 (105)
T 2aje_A            7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV   86 (105)
T ss_dssp             --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence            45789999999999999999999999999999999652   3899999999999998     6999999888887665 8


Q ss_pred             HHHHHHcCC
Q 039070           78 IDIHRILGN   86 (338)
Q Consensus        78 l~lv~~~G~   86 (338)
                      ++|+..+|+
T Consensus        87 ~~~~~~~~~   95 (105)
T 2aje_A           87 LNAHGYWTQ   95 (105)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888877663

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.37  E-value=8.5e-14  Score=117.78  Aligned_cols=65  Identities=23%  Similarity=0.535  Sum_probs=61.2

Q ss_pred             CCCCChHHHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCCCCcCCCCCCCC
Q 039070           66 RGSFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHNLISP  130 (338)
Q Consensus        66 kg~WT~EEDe~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~~g~~~~e~~~l~p  130 (338)
                      +|+||+|||++|+++|.+|| .+|..||..|+|||+.||+.||.++|.+.+.++.|+++++..|..
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~   67 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFR   67 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHH
Confidence            79999999999999999999 679999999999999999999999999999999999999877643

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.36  E-value=6.7e-13  Score=103.11  Aligned_cols=52  Identities=12%  Similarity=0.330  Sum_probs=47.9

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHcC----CCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 039070           61 RPDLKRGSFTEQEERIIIDIHRILG----NRWAQIAKHLPGRTDNEVKNFWNSCIK  112 (338)
Q Consensus        61 ~p~lkkg~WT~EEDe~Ll~lv~~~G----~kWs~IA~~LpgRT~~qcKnRW~slLk  112 (338)
                      .+...+++||+|||++|++++..||    ++|.+||++|||||+.+|++||+.+++
T Consensus        13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            3567889999999999999999999    689999999999999999999998765

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.34  E-value=2.8e-13  Score=107.66  Aligned_cols=69  Identities=23%  Similarity=0.394  Sum_probs=60.0

Q ss_pred             cCCCHHHHHHHHHHHHHhCCCCccccccc----ccccccCccccceeeccc-----CCCCCCC-CCChHHHHHHHHHHHH
Q 039070           14 GLWSPEEDEKLIKHVTTHGHGSWSSVPKL----AGLQRCGKSCRLRWINYL-----RPDLKRG-SFTEQEERIIIDIHRI   83 (338)
Q Consensus        14 g~WT~EEDe~L~~lV~k~G~~nW~~IAk~----lg~~Rt~kQCr~RW~n~L-----~p~lkkg-~WT~EEDe~Ll~lv~~   83 (338)
                      ++||+|||++|+++|++||.|+|..|++.    ++ +||+.+|++||++++     .|.+++| +..++...+++.++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            58999999999999999999999999985    66 899999999999988     6776665 5667777889888864

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.32  E-value=1.2e-12  Score=102.83  Aligned_cols=48  Identities=19%  Similarity=0.392  Sum_probs=45.1

Q ss_pred             CCCCCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 039070           63 DLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSC  110 (338)
Q Consensus        63 ~lkkg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~sl  110 (338)
                      ...+++||+|||++|++++.+||.+|.+||++|++||+.||++||..+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            456899999999999999999999999999999999999999999765

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.29  E-value=5.8e-13  Score=103.51  Aligned_cols=56  Identities=25%  Similarity=0.414  Sum_probs=48.7

Q ss_pred             cCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCC
Q 039070            8 KQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG   67 (338)
Q Consensus         8 K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg   67 (338)
                      .|++++|+||+|||++|+++|++||. +|..||+.|  +|++.||+.||.. |....+.|
T Consensus        18 dP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~G   73 (73)
T 2llk_A           18 GDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCNTG   73 (73)
T ss_dssp             -CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHccCC
Confidence            48999999999999999999999996 699999998  5999999999974 55555543

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.27  E-value=1.8e-12  Score=120.59  Aligned_cols=67  Identities=22%  Similarity=0.446  Sum_probs=56.1

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHcCCC------HHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCCCCcCCCCCCC
Q 039070           62 PDLKRGSFTEQEERIIIDIHRILGNR------WAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHNLIS  129 (338)
Q Consensus        62 p~lkkg~WT~EEDe~Ll~lv~~~G~k------Ws~IA~~LpgRT~~qcKnRW~slLkkkl~~~g~~~~e~~~l~  129 (338)
                      +.+++++||+|||++|+++|++||++      |..||++|+|||+++||+||+++|++++. ..|...++..+.
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln-~vy~~ded~~Li   76 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE-YVYEVDKFGKLV   76 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC-CEECBCTTSCBC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc-cccccCcchhhh
Confidence            45789999999999999999999975      99999999999999999999999999877 337766665543

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.26  E-value=6.7e-12  Score=99.67  Aligned_cols=48  Identities=21%  Similarity=0.468  Sum_probs=44.9

Q ss_pred             CCCChHHHHHHHHHHHHcCC-CHHHHHhh----CCCCCHHHHHHHHHHHhhhH
Q 039070           67 GSFTEQEERIIIDIHRILGN-RWAQIAKH----LPGRTDNEVKNFWNSCIKKK  114 (338)
Q Consensus        67 g~WT~EEDe~Ll~lv~~~G~-kWs~IA~~----LpgRT~~qcKnRW~slLkkk  114 (338)
                      .+||+|||+.|+++|.+||. +|+.|++.    |+|||+.+||+||+++++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~   53 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   53 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence            48999999999999999997 99999996    89999999999999999754

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.26  E-value=6.1e-12  Score=94.95  Aligned_cols=50  Identities=22%  Similarity=0.378  Sum_probs=46.1

Q ss_pred             CCCCCCChHHHHHHHHHHHHcCCCHHHHHh---hCCCCCHHHHHHHHHHHhhh
Q 039070           64 LKRGSFTEQEERIIIDIHRILGNRWAQIAK---HLPGRTDNEVKNFWNSCIKK  113 (338)
Q Consensus        64 lkkg~WT~EEDe~Ll~lv~~~G~kWs~IA~---~LpgRT~~qcKnRW~slLkk  113 (338)
                      -++.+||+|||+.|+++|++||.+|+.|+.   .+++||+.++|+||++++|+
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            467899999999999999999999999994   67999999999999998875

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.26  E-value=8.3e-13  Score=103.81  Aligned_cols=53  Identities=21%  Similarity=0.418  Sum_probs=48.5

Q ss_pred             CCccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecc
Q 039070            5 CCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINY   59 (338)
Q Consensus         5 ~c~K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~   59 (338)
                      .+-+....+++||+|||++|+++|++|| ++|.+||+.|| +|++.||+.||.++
T Consensus        10 ~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~   62 (79)
T 2yus_A           10 AKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL   62 (79)
T ss_dssp             CCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred             CCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            3445667789999999999999999999 79999999999 89999999999997

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.24  E-value=1.1e-11  Score=102.39  Aligned_cols=53  Identities=21%  Similarity=0.393  Sum_probs=48.3

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHcCC-CHHHHHhhC----CCCCHHHHHHHHHHHhhh
Q 039070           61 RPDLKRGSFTEQEERIIIDIHRILGN-RWAQIAKHL----PGRTDNEVKNFWNSCIKK  113 (338)
Q Consensus        61 ~p~lkkg~WT~EEDe~Ll~lv~~~G~-kWs~IA~~L----pgRT~~qcKnRW~slLkk  113 (338)
                      .+..++++||+|||+.|+++|.+||. +|+.|++.+    +|||+.+||+||+++++.
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~   65 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT   65 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            34678899999999999999999997 999999975    899999999999999975

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.23  E-value=5.6e-12  Score=106.64  Aligned_cols=54  Identities=22%  Similarity=0.441  Sum_probs=50.1

Q ss_pred             cCCCCCCCCCChHHHHHHHHHHHHcCC-CHHHHHhhC----CCCCHHHHHHHHHHHhhh
Q 039070           60 LRPDLKRGSFTEQEERIIIDIHRILGN-RWAQIAKHL----PGRTDNEVKNFWNSCIKK  113 (338)
Q Consensus        60 L~p~lkkg~WT~EEDe~Ll~lv~~~G~-kWs~IA~~L----pgRT~~qcKnRW~slLkk  113 (338)
                      +.+..++++||+|||+.|+++|.+||. +|+.|++.+    +|||+.+||+||+++++.
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~   69 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT   69 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            566788999999999999999999997 999999984    899999999999999984

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.22  E-value=1.7e-11  Score=99.24  Aligned_cols=58  Identities=24%  Similarity=0.487  Sum_probs=49.6

Q ss_pred             CCCCCChHHHHHHHHHHHHcC----CCHHHHHhhCCCCCHHHHHHHHHHHhhhH-HHhCCCCc
Q 039070           65 KRGSFTEQEERIIIDIHRILG----NRWAQIAKHLPGRTDNEVKNFWNSCIKKK-LIARGIDP  122 (338)
Q Consensus        65 kkg~WT~EEDe~Ll~lv~~~G----~kWs~IA~~LpgRT~~qcKnRW~slLkkk-l~~~g~~~  122 (338)
                      .+++||+|||++|++++..||    ++|.+||++|||||+++|++||+.+++.. .+..|..|
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp   69 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVP   69 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            467999999999999999996    67999999999999999999999988764 44455543

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.84  E-value=1.4e-12  Score=104.37  Aligned_cols=54  Identities=22%  Similarity=0.527  Sum_probs=50.3

Q ss_pred             ccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCC
Q 039070            7 SKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRP   62 (338)
Q Consensus         7 ~K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p   62 (338)
                      ..+.+++|+||+|||++|+++|..||. +|..||+.|+ +|++.||+.||.++|+.
T Consensus        10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A           10 GRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR   63 (89)
Confidence            457899999999999999999999997 8999999999 99999999999998864

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.20  E-value=1.3e-11  Score=104.56  Aligned_cols=54  Identities=22%  Similarity=0.423  Sum_probs=48.5

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHcCC-CHHHHHhhC----CCCCHHHHHHHHHHHhhhH
Q 039070           61 RPDLKRGSFTEQEERIIIDIHRILGN-RWAQIAKHL----PGRTDNEVKNFWNSCIKKK  114 (338)
Q Consensus        61 ~p~lkkg~WT~EEDe~Ll~lv~~~G~-kWs~IA~~L----pgRT~~qcKnRW~slLkkk  114 (338)
                      ....++++||+|||+.|+++|++||. +|+.|++.+    ++||+.+||+||+++++..
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~   84 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA   84 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            34567899999999999999999997 899999974    8999999999999999753

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.18  E-value=2.1e-12  Score=100.36  Aligned_cols=56  Identities=9%  Similarity=0.277  Sum_probs=50.6

Q ss_pred             CCccCCCCccCCCHHHHHHHHHHHHHhCC---CCcccccccccccccCccccceeecccC
Q 039070            5 CCSKQKVKRGLWSPEEDEKLIKHVTTHGH---GSWSSVPKLAGLQRCGKSCRLRWINYLR   61 (338)
Q Consensus         5 ~c~K~~lkkg~WT~EEDe~L~~lV~k~G~---~nW~~IAk~lg~~Rt~kQCr~RW~n~L~   61 (338)
                      --+++...+++||+|||++|+++|++||.   .+|.+||+.|| ||+..||+.||.+++.
T Consensus        10 ~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           10 RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred             cccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            45678889999999999999999999993   47999999999 9999999999998765

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.96  E-value=8.8e-10  Score=89.34  Aligned_cols=67  Identities=18%  Similarity=0.242  Sum_probs=60.6

Q ss_pred             CccccceeecccCCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHhhC-----CCCCHHHHHHHHHHHhhhHHHhCC
Q 039070           49 GKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHL-----PGRTDNEVKNFWNSCIKKKLIARG  119 (338)
Q Consensus        49 ~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G~kWs~IA~~L-----pgRT~~qcKnRW~slLkkkl~~~g  119 (338)
                      ..=+.++|.++|.+    ++||.||+..|++|+++||.+|..|+..+     ++||..++|+||..+.++.+..++
T Consensus        17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~   88 (93)
T 3hm5_A           17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            34567899999976    89999999999999999999999999999     589999999999999998877764

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.96  E-value=1.4e-09  Score=81.08  Aligned_cols=48  Identities=17%  Similarity=0.157  Sum_probs=44.3

Q ss_pred             CCCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 039070           65 KRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIK  112 (338)
Q Consensus        65 kkg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLk  112 (338)
                      ..++||+||++++++++..||.+|..||.+|++||..+|+.+|+...|
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk   58 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK   58 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence            457999999999999999999999999999999999999999976544

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.94  E-value=1.2e-09  Score=84.52  Aligned_cols=57  Identities=19%  Similarity=0.266  Sum_probs=48.2

Q ss_pred             CCCCCCCChHHHHHHHHHHHHcC----CCHHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCCC
Q 039070           63 DLKRGSFTEQEERIIIDIHRILG----NRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGI  120 (338)
Q Consensus        63 ~lkkg~WT~EEDe~Ll~lv~~~G----~kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~~g~  120 (338)
                      ..+.+.||.||+++|.+++.+|+    .+|.+||+++ |||..+|+.||+.+.+......|.
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~~~~~G~   65 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCSPGM   65 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCCCCSCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhcCccCCC
Confidence            45678999999999999999997    6799999998 999999999999887654333343

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.81  E-value=3.7e-10  Score=91.43  Aligned_cols=49  Identities=12%  Similarity=0.303  Sum_probs=43.1

Q ss_pred             CCccCCCHHHHHHHHHHHHHhCC---CCcccccccccccccCccccceeeccc
Q 039070           11 VKRGLWSPEEDEKLIKHVTTHGH---GSWSSVPKLAGLQRCGKSCRLRWINYL   60 (338)
Q Consensus        11 lkkg~WT~EEDe~L~~lV~k~G~---~nW~~IAk~lg~~Rt~kQCr~RW~n~L   60 (338)
                      -.+++||+|||++|.+++++||.   ..|.+||+.+| ||+..||+.||.+++
T Consensus         6 ~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            6 GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV   57 (93)
T ss_dssp             --CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            34689999999999999999983   46999999999 999999999998864

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.72  E-value=1.4e-08  Score=93.94  Aligned_cols=50  Identities=18%  Similarity=0.335  Sum_probs=46.7

Q ss_pred             CCCCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070           64 LKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK  113 (338)
Q Consensus        64 lkkg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk  113 (338)
                      ...++||+||++++++++++||++|..||+.+++||..|||++|+...|+
T Consensus       131 k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          131 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            44679999999999999999999999999999999999999999988765

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.65  E-value=6.3e-09  Score=77.51  Aligned_cols=54  Identities=13%  Similarity=0.228  Sum_probs=47.8

Q ss_pred             CCccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeeccc
Q 039070            5 CCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL   60 (338)
Q Consensus         5 ~c~K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L   60 (338)
                      --++.+...++||+||++++.+++.+|| .+|..||+.|+ +|+..||+.+|....
T Consensus         4 ~~~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~-~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A            4 GSSGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE-RKSVPDCVLYYYLTK   57 (61)
T ss_dssp             SCCCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence            3466677889999999999999999999 59999999999 999999999986543

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.62  E-value=8.2e-09  Score=77.88  Aligned_cols=50  Identities=20%  Similarity=0.296  Sum_probs=44.7

Q ss_pred             CCCccCCCHHHHHHHHHHHHHhCCCCccccc---ccccccccCccccceeecccC
Q 039070           10 KVKRGLWSPEEDEKLIKHVTTHGHGSWSSVP---KLAGLQRCGKSCRLRWINYLR   61 (338)
Q Consensus        10 ~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IA---k~lg~~Rt~kQCr~RW~n~L~   61 (338)
                      ..++++||+|||+.|+++|++||. +|..|+   .++. +|+...+.+||++..+
T Consensus         5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence            457899999999999999999997 999999   5665 8999999999998654

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.48  E-value=9.8e-08  Score=96.64  Aligned_cols=46  Identities=20%  Similarity=0.378  Sum_probs=42.9

Q ss_pred             CCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 039070           67 GSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIK  112 (338)
Q Consensus        67 g~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLk  112 (338)
                      .+||+||-+++++++++||.+|..||+++++||..|||++|....+
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk  426 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR  426 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999976544

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.44  E-value=3e-07  Score=71.42  Aligned_cols=47  Identities=15%  Similarity=0.237  Sum_probs=42.8

Q ss_pred             CCCCChHHHHHHHHHHHHcCC----CHHHHHhhCCCCCHHHHHHHHHHHhh
Q 039070           66 RGSFTEQEERIIIDIHRILGN----RWAQIAKHLPGRTDNEVKNFWNSCIK  112 (338)
Q Consensus        66 kg~WT~EEDe~Ll~lv~~~G~----kWs~IA~~LpgRT~~qcKnRW~slLk  112 (338)
                      .+.||.+|+++|.+++..|+.    +|.+||.+++|||..+|+.||..+++
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            468999999999999999983    69999999999999999999988753

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.41  E-value=3.4e-08  Score=76.36  Aligned_cols=52  Identities=13%  Similarity=0.253  Sum_probs=45.0

Q ss_pred             cCCCCccCCCHHHHHHHHHHHHHhCC---CCcccccccccccccCccccceeecccC
Q 039070            8 KQKVKRGLWSPEEDEKLIKHVTTHGH---GSWSSVPKLAGLQRCGKSCRLRWINYLR   61 (338)
Q Consensus         8 K~~lkkg~WT~EEDe~L~~lV~k~G~---~nW~~IAk~lg~~Rt~kQCr~RW~n~L~   61 (338)
                      ....+++.||.|||++|.+++++|+.   ..|.+||+.+|  |+..+|+.||.....
T Consensus         3 ~~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~   57 (72)
T 2cqq_A            3 SGSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence            35567889999999999999999984   45999999975  999999999987654

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.35  E-value=4.3e-07  Score=67.52  Aligned_cols=47  Identities=21%  Similarity=0.400  Sum_probs=42.8

Q ss_pred             CCCCChHHHHHHHHHHHHc--------CCC-HHHHHh-hCCCCCHHHHHHHHHHHhh
Q 039070           66 RGSFTEQEERIIIDIHRIL--------GNR-WAQIAK-HLPGRTDNEVKNFWNSCIK  112 (338)
Q Consensus        66 kg~WT~EEDe~Ll~lv~~~--------G~k-Ws~IA~-~LpgRT~~qcKnRW~slLk  112 (338)
                      |.+||+|||+.|++.|.+|        |+. |..+|+ .++++|-.++|+||...|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        655 999999 7999999999999987664

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.29  E-value=9.1e-08  Score=71.20  Aligned_cols=48  Identities=23%  Similarity=0.399  Sum_probs=42.5

Q ss_pred             ccCCCHHHHHHHHHHHHHh--------CCCCcccccc-cccccccCccccceeecccC
Q 039070           13 RGLWSPEEDEKLIKHVTTH--------GHGSWSSVPK-LAGLQRCGKSCRLRWINYLR   61 (338)
Q Consensus        13 kg~WT~EEDe~L~~lV~k~--------G~~nW~~IAk-~lg~~Rt~kQCr~RW~n~L~   61 (338)
                      |.+||+|||+.|+++|.+|        |..-|..+++ .++ .++..+||+||.++|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence            6789999999999999999        3334999999 787 9999999999999875

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.13  E-value=3.6e-07  Score=70.99  Aligned_cols=48  Identities=25%  Similarity=0.484  Sum_probs=43.1

Q ss_pred             ccCCCHHHHHHHHHHHHHhCC---CCcccccccccccccCccccceeecccC
Q 039070           13 RGLWSPEEDEKLIKHVTTHGH---GSWSSVPKLAGLQRCGKSCRLRWINYLR   61 (338)
Q Consensus        13 kg~WT~EEDe~L~~lV~k~G~---~nW~~IAk~lg~~Rt~kQCr~RW~n~L~   61 (338)
                      ...||.+|+++|.+++..|+.   ++|..||..+| +|+..+|+.||...+.
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            467999999999999999985   46999999999 8999999999987654

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.12  E-value=4.6e-06  Score=62.46  Aligned_cols=50  Identities=22%  Similarity=0.331  Sum_probs=45.5

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHhh-CCCCCHHHHHHHHHHH
Q 039070           61 RPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKH-LPGRTDNEVKNFWNSC  110 (338)
Q Consensus        61 ~p~lkkg~WT~EEDe~Ll~lv~~~G~kWs~IA~~-LpgRT~~qcKnRW~sl  110 (338)
                      .|.++...||+||-++..+++.+||.+|..|+++ |++||..+|..+|+..
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w   54 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW   54 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence            4678889999999999999999999999999995 8999999999988653

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.08  E-value=4.8e-06  Score=67.13  Aligned_cols=47  Identities=19%  Similarity=0.358  Sum_probs=43.9

Q ss_pred             CCCChHHHHHHHHHHHHcCC---CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070           67 GSFTEQEERIIIDIHRILGN---RWAQIAKHLPGRTDNEVKNFWNSCIKK  113 (338)
Q Consensus        67 g~WT~EEDe~Ll~lv~~~G~---kWs~IA~~LpgRT~~qcKnRW~slLkk  113 (338)
                      --||.|||+.|+...++-|.   .|+.||+.|.+|+.+||++||+.+++-
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L   83 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL   83 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            36999999999999999996   799999999999999999999998874

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.07  E-value=7.3e-07  Score=82.54  Aligned_cols=53  Identities=15%  Similarity=0.346  Sum_probs=47.4

Q ss_pred             ccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccC
Q 039070            7 SKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLR   61 (338)
Q Consensus         7 ~K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~   61 (338)
                      +......++||.||++++++++.+||. +|..||+.+| +|+..||+.+|.++.+
T Consensus       127 e~~~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          127 EVIQKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCCCccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            344566789999999999999999995 9999999999 9999999999988764

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.07  E-value=2.1e-06  Score=65.82  Aligned_cols=44  Identities=23%  Similarity=0.391  Sum_probs=41.8

Q ss_pred             CCChHHHHHHHHHHHHcCC---CHHHHHhhCCCCCHHHHHHHHHHHhh
Q 039070           68 SFTEQEERIIIDIHRILGN---RWAQIAKHLPGRTDNEVKNFWNSCIK  112 (338)
Q Consensus        68 ~WT~EEDe~Ll~lv~~~G~---kWs~IA~~LpgRT~~qcKnRW~slLk  112 (338)
                      -||.|||+.|+..+++-|.   .|+.||+.| +||++||++||..+++
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            6999999999999999997   799999999 9999999999999875

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.84  E-value=2.7e-06  Score=66.07  Aligned_cols=43  Identities=23%  Similarity=0.374  Sum_probs=38.6

Q ss_pred             CCCCChHHHHHHHHHHHHcCC----CHHHHHhhCCCCCHHHHHHHHH
Q 039070           66 RGSFTEQEERIIIDIHRILGN----RWAQIAKHLPGRTDNEVKNFWN  108 (338)
Q Consensus        66 kg~WT~EEDe~Ll~lv~~~G~----kWs~IA~~LpgRT~~qcKnRW~  108 (338)
                      .+.||.+|+++|.++...|+.    +|.+||+.+||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            458999999999999999984    7999999999999999999884

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.80  E-value=6.2e-05  Score=60.91  Aligned_cols=61  Identities=20%  Similarity=0.301  Sum_probs=52.0

Q ss_pred             eeecccCCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHhhCC-----CCCHHHHHHHHHHHhhhHHHhCC
Q 039070           55 RWINYLRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLP-----GRTDNEVKNFWNSCIKKKLIARG  119 (338)
Q Consensus        55 RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G~kWs~IA~~Lp-----gRT~~qcKnRW~slLkkkl~~~g  119 (338)
                      .|..+|.    ...||.||...|++|+++|+-+|..|+..+.     .||-.++|.||+.+.++.+..++
T Consensus        23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~   88 (93)
T 4iej_A           23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence            4445554    3689999999999999999999999999873     79999999999999988776653

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=97.77  E-value=3.1e-05  Score=74.50  Aligned_cols=99  Identities=18%  Similarity=0.252  Sum_probs=79.3

Q ss_pred             cCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccc-------eeecc---------------------------
Q 039070           14 GLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRL-------RWINY---------------------------   59 (338)
Q Consensus        14 g~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~-------RW~n~---------------------------   59 (338)
                      +.||..+...++.++.+||..+|..||..|+ +++...++.       ||..+                           
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l  189 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL  189 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3699999999999999999999999999998 788776642       22100                           


Q ss_pred             ----------------cCCCCCCCCCChHHHHHHHHHHHHcCC----CHHHHHh------------hCCCCCHHHHHHHH
Q 039070           60 ----------------LRPDLKRGSFTEQEERIIIDIHRILGN----RWAQIAK------------HLPGRTDNEVKNFW  107 (338)
Q Consensus        60 ----------------L~p~lkkg~WT~EEDe~Ll~lv~~~G~----kWs~IA~------------~LpgRT~~qcKnRW  107 (338)
                                      ..+..+...||++||..|+-++.+||-    .|..|..            .+..||+.+|..|-
T Consensus       190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc  269 (304)
T 1ofc_X          190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC  269 (304)
T ss_dssp             HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred             HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence                            012234568999999999999999995    4999963            34779999999999


Q ss_pred             HHHhhh
Q 039070          108 NSCIKK  113 (338)
Q Consensus       108 ~slLkk  113 (338)
                      +++++-
T Consensus       270 ~tLi~~  275 (304)
T 1ofc_X          270 NTLITL  275 (304)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999974

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.75  E-value=4.1e-06  Score=65.12  Aligned_cols=45  Identities=11%  Similarity=0.235  Sum_probs=39.3

Q ss_pred             CccCCCHHHHHHHHHHHHHhCCC---CcccccccccccccCccccceee
Q 039070           12 KRGLWSPEEDEKLIKHVTTHGHG---SWSSVPKLAGLQRCGKSCRLRWI   57 (338)
Q Consensus        12 kkg~WT~EEDe~L~~lV~k~G~~---nW~~IAk~lg~~Rt~kQCr~RW~   57 (338)
                      ..+.||.+|+++|.++++.|+.+   .|.+||..+| ||+..+|+.+|.
T Consensus        19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~   66 (74)
T 4eef_G           19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE   66 (74)
T ss_dssp             ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence            35689999999999999999864   6999999999 999999999985

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.58  E-value=0.00011  Score=59.24  Aligned_cols=45  Identities=18%  Similarity=0.179  Sum_probs=41.8

Q ss_pred             CCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 039070           66 RGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSC  110 (338)
Q Consensus        66 kg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~sl  110 (338)
                      ...||+||.++..++...||.+|..||..|++||..+|-.+|+..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~   87 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   87 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence            468999999999999999999999999999999999999988653

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.57  E-value=0.00015  Score=55.35  Aligned_cols=44  Identities=11%  Similarity=0.280  Sum_probs=41.0

Q ss_pred             CCCCChHHHHHHHHHHHHcCCCHHHHHh-hCCCCCHHHHHHHHHH
Q 039070           66 RGSFTEQEERIIIDIHRILGNRWAQIAK-HLPGRTDNEVKNFWNS  109 (338)
Q Consensus        66 kg~WT~EEDe~Ll~lv~~~G~kWs~IA~-~LpgRT~~qcKnRW~s  109 (338)
                      ...||+||-++..+++.+||.+|..|++ .|++||..+|..+|+.
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            4689999999999999999999999999 5899999999999874

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.38  E-value=5.4e-05  Score=56.58  Aligned_cols=50  Identities=14%  Similarity=0.201  Sum_probs=44.6

Q ss_pred             ccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccc-cccccccCccccceeec
Q 039070            7 SKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPK-LAGLQRCGKSCRLRWIN   58 (338)
Q Consensus         7 ~K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk-~lg~~Rt~kQCr~RW~n   58 (338)
                      ..|.++...||+||-++..+++.+||. +|..|++ .++ +|+..+|...|..
T Consensus         3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            3 SGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred             CCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence            457888899999999999999999996 9999998 688 9999999887643

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.08  E-value=0.00053  Score=53.50  Aligned_cols=48  Identities=21%  Similarity=0.492  Sum_probs=40.5

Q ss_pred             CCCCChHHHHHHHHHHHHcC----------CCHHHHHhhCC----CCCHHHHHHHHHHHhhh
Q 039070           66 RGSFTEQEERIIIDIHRILG----------NRWAQIAKHLP----GRTDNEVKNFWNSCIKK  113 (338)
Q Consensus        66 kg~WT~EEDe~Ll~lv~~~G----------~kWs~IA~~Lp----gRT~~qcKnRW~slLkk  113 (338)
                      ...||.+|-..||++...+.          ..|..||..|.    .||+.||+.+|.++.+.
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~   65 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE   65 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence            46899999999999997642          14999999872    79999999999987765

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.06  E-value=0.00013  Score=73.90  Aligned_cols=49  Identities=14%  Similarity=0.365  Sum_probs=44.1

Q ss_pred             CCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeeccc
Q 039070           10 KVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL   60 (338)
Q Consensus        10 ~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L   60 (338)
                      .....+||.||-+++++++.+||. +|..||+.+| +|+..||+..|.++-
T Consensus       377 ~~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~k  425 (482)
T 2xag_B          377 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYR  425 (482)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred             cccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            345789999999999999999995 9999999999 999999999987653

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=96.94  E-value=0.00015  Score=58.68  Aligned_cols=49  Identities=10%  Similarity=0.213  Sum_probs=42.0

Q ss_pred             CCccCCCHHHHHHHHHHHHHhCCCCccccccccc----ccccCccccceeeccc
Q 039070           11 VKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAG----LQRCGKSCRLRWINYL   60 (338)
Q Consensus        11 lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg----~~Rt~kQCr~RW~n~L   60 (338)
                      ++..+||.||++.|++++++|+. .|..|+....    .+|+..++++||..+.
T Consensus        28 L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~   80 (93)
T 3hm5_A           28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence            45589999999999999999995 9999999872    2699999999987643

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=96.50  E-value=0.00059  Score=54.87  Aligned_cols=43  Identities=16%  Similarity=0.423  Sum_probs=39.5

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceee
Q 039070           13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWI   57 (338)
Q Consensus        13 kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~   57 (338)
                      ...||+||.++..+++..||. +|..||+.++ +|+..+|.+.|.
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~-~Kt~~~cV~~YY   85 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYY   85 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCT-TCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcC-CCCHHHHHHHHh
Confidence            468999999999999999994 9999999999 999999988764

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.47  E-value=0.001  Score=50.62  Aligned_cols=46  Identities=11%  Similarity=0.101  Sum_probs=40.6

Q ss_pred             CCccCCCHHHHHHHHHHHHHhCCCCcccccc-cccccccCccccceeec
Q 039070           11 VKRGLWSPEEDEKLIKHVTTHGHGSWSSVPK-LAGLQRCGKSCRLRWIN   58 (338)
Q Consensus        11 lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk-~lg~~Rt~kQCr~RW~n   58 (338)
                      -....||+||-++..+++.+||. +|..|++ .++ +|+..+|...|..
T Consensus         6 ~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~   52 (70)
T 2crg_A            6 SGMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYM   52 (70)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHHh
Confidence            45568999999999999999996 9999999 698 9999999886653

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=96.29  E-value=0.0058  Score=60.20  Aligned_cols=101  Identities=18%  Similarity=0.223  Sum_probs=75.8

Q ss_pred             cCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccc-------eeecc---------------------------
Q 039070           14 GLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRL-------RWINY---------------------------   59 (338)
Q Consensus        14 g~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~-------RW~n~---------------------------   59 (338)
                      +.||.-+=..++.++.+||..+-..||..|+.+++...++.       ||..+                           
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L  203 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL  203 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46999999999999999999889999998853455554441       22110                           


Q ss_pred             -------------c---CCCC--CCCCCChHHHHHHHHHHHHcCC----CHHHHHhh------------CCCCCHHHHHH
Q 039070           60 -------------L---RPDL--KRGSFTEQEERIIIDIHRILGN----RWAQIAKH------------LPGRTDNEVKN  105 (338)
Q Consensus        60 -------------L---~p~l--kkg~WT~EEDe~Ll~lv~~~G~----kWs~IA~~------------LpgRT~~qcKn  105 (338)
                                   |   .+..  +...||++||..|+-++.+||-    .|..|-..            +..||+.+|..
T Consensus       204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r  283 (374)
T 2y9y_A          204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR  283 (374)
T ss_dssp             HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred             HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence                         0   0111  3457999999999999999994    59999442            46799999999


Q ss_pred             HHHHHhhhH
Q 039070          106 FWNSCIKKK  114 (338)
Q Consensus       106 RW~slLkkk  114 (338)
                      |-+++++-.
T Consensus       284 Rc~tLi~~I  292 (374)
T 2y9y_A          284 RGNTLLQCL  292 (374)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999753

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.23  E-value=0.00029  Score=55.02  Aligned_cols=50  Identities=22%  Similarity=0.481  Sum_probs=39.7

Q ss_pred             CCccCCCHHHHHHHHHHHHHhCC---------CCcccccccc---cccccCccccceeeccc
Q 039070           11 VKRGLWSPEEDEKLIKHVTTHGH---------GSWSSVPKLA---GLQRCGKSCRLRWINYL   60 (338)
Q Consensus        11 lkkg~WT~EEDe~L~~lV~k~G~---------~nW~~IAk~l---g~~Rt~kQCr~RW~n~L   60 (338)
                      .+...||.+|...|+++...+..         .-|..||..|   |..|++.||+.+|.+..
T Consensus         2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            46788999999999999975321         1499999864   45799999999998753

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.15  E-value=0.002  Score=51.92  Aligned_cols=48  Identities=19%  Similarity=0.350  Sum_probs=41.9

Q ss_pred             CCCccCCCHHHHHHHHHHHHHhCC--CCcccccccccccccCccccceeec
Q 039070           10 KVKRGLWSPEEDEKLIKHVTTHGH--GSWSSVPKLAGLQRCGKSCRLRWIN   58 (338)
Q Consensus        10 ~lkkg~WT~EEDe~L~~lV~k~G~--~nW~~IAk~lg~~Rt~kQCr~RW~n   58 (338)
                      .-+--.||.|||..|+...++.|.  ..|..||+.++ +|++.|+.+|++.
T Consensus        30 Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~   79 (95)
T 1ug2_A           30 GEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRE   79 (95)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred             CCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHH
Confidence            344457999999999999999985  36999999998 8999999999876

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=95.03  E-value=0.001  Score=50.93  Aligned_cols=48  Identities=10%  Similarity=0.269  Sum_probs=41.1

Q ss_pred             CccCCCHHHHHHHHHHHHHhCC--CCcccccccccccccCccccceeecccC
Q 039070           12 KRGLWSPEEDEKLIKHVTTHGH--GSWSSVPKLAGLQRCGKSCRLRWINYLR   61 (338)
Q Consensus        12 kkg~WT~EEDe~L~~lV~k~G~--~nW~~IAk~lg~~Rt~kQCr~RW~n~L~   61 (338)
                      .--.||.|||..|+...++.|.  ..|..||+.++  |++.|+..|++..++
T Consensus        13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~Ln--ks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAKLD--KNPNQVSERFQQLMK   62 (70)
Confidence            3457999999999999999986  36999999884  999999999987543

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=94.86  E-value=0.02  Score=50.91  Aligned_cols=38  Identities=26%  Similarity=0.482  Sum_probs=32.5

Q ss_pred             CCCccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccc
Q 039070            4 NCCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPK   41 (338)
Q Consensus         4 ~~c~K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk   41 (338)
                      |++.++......||.+||..|+..|.+||.|+|..|-.
T Consensus       125 ~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~  162 (211)
T 4b4c_A          125 PCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM  162 (211)
T ss_dssp             CSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence            45566666667799999999999999999999999875

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=94.82  E-value=0.079  Score=39.93  Aligned_cols=48  Identities=15%  Similarity=0.062  Sum_probs=41.1

Q ss_pred             CCCCCCChHHHHHHHHHHHHcCCC---HHHHHhhC--CCCCHHHHHHHHHHHh
Q 039070           64 LKRGSFTEQEERIIIDIHRILGNR---WAQIAKHL--PGRTDNEVKNFWNSCI  111 (338)
Q Consensus        64 lkkg~WT~EEDe~Ll~lv~~~G~k---Ws~IA~~L--pgRT~~qcKnRW~slL  111 (338)
                      ..+-.||+|..+..++++.++|..   +..|.+.|  +|.|..+|+.|.+.+.
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR   57 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            345689999999999999999954   88999986  7899999999986543

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=92.26  E-value=0.21  Score=47.91  Aligned_cols=48  Identities=21%  Similarity=0.299  Sum_probs=42.5

Q ss_pred             CCCCChHHHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070           66 RGSFTEQEERIIIDIHRILGN-RWAQIAKHLPGRTDNEVKNFWNSCIKK  113 (338)
Q Consensus        66 kg~WT~EEDe~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~slLkk  113 (338)
                      -+.||..+...++.++.+||. .|..||..|+|+|..+|+.++.....+
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r  158 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER  158 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            357999999999999999995 699999999999999998887666654

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=92.08  E-value=0.24  Score=43.77  Aligned_cols=51  Identities=18%  Similarity=0.279  Sum_probs=42.2

Q ss_pred             CCCCCCChHHHHHHHHHHHHcC---CCHHHHHhh--CCCCCHHHHHHHHHHHhhhH
Q 039070           64 LKRGSFTEQEERIIIDIHRILG---NRWAQIAKH--LPGRTDNEVKNFWNSCIKKK  114 (338)
Q Consensus        64 lkkg~WT~EEDe~Ll~lv~~~G---~kWs~IA~~--LpgRT~~qcKnRW~slLkkk  114 (338)
                      -....||+.|-..|++++.+||   .+|..|++.  |.+||..+|+..+..++...
T Consensus         5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c   60 (211)
T 4b4c_A            5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC   60 (211)
T ss_dssp             ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence            3456899999999999999999   579999875  78999999999887766553

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=91.82  E-value=0.036  Score=44.70  Aligned_cols=48  Identities=10%  Similarity=0.227  Sum_probs=38.9

Q ss_pred             CCccCCCHHHHHHHHHHHHHhCCCCccccccccc----ccccCccccceeecc
Q 039070           11 VKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAG----LQRCGKSCRLRWINY   59 (338)
Q Consensus        11 lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg----~~Rt~kQCr~RW~n~   59 (338)
                      ++...||.||.+.|.+++++|.- .|..|+....    ..|+..+.++||..+
T Consensus        28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V   79 (93)
T 4iej_A           28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHI   79 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred             hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence            44578999999999999999995 9999997543    157777888887654

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=91.57  E-value=0.085  Score=49.81  Aligned_cols=28  Identities=43%  Similarity=0.778  Sum_probs=26.1

Q ss_pred             cCCCHHHHHHHHHHHHHhCCCCcccccc
Q 039070           14 GLWSPEEDEKLIKHVTTHGHGSWSSVPK   41 (338)
Q Consensus        14 g~WT~EEDe~L~~lV~k~G~~nW~~IAk   41 (338)
                      -.|+.+||..|+..|.+||.|+|..|-.
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            3599999999999999999999999985

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=81.68  E-value=0.41  Score=36.03  Aligned_cols=49  Identities=20%  Similarity=0.231  Sum_probs=35.3

Q ss_pred             CCCCccCCCHHHHHHHHHHHHHhCCC--Ccccccccccc-cccCccccceee
Q 039070            9 QKVKRGLWSPEEDEKLIKHVTTHGHG--SWSSVPKLAGL-QRCGKSCRLRWI   57 (338)
Q Consensus         9 ~~lkkg~WT~EEDe~L~~lV~k~G~~--nW~~IAk~lg~-~Rt~kQCr~RW~   57 (338)
                      .+..+-.||+|.-++.+++|+..|..  .+..|.+.|+. +.+..++.-|.+
T Consensus         3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQ   54 (64)
T 1irz_A            3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQ   54 (64)
T ss_dssp             CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred             CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHH
Confidence            45677789999999999999999942  26677776662 455555554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	338
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	6e-20
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	4e-11
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-18
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	4e-09
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	4e-17
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	4e-12
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	1e-16
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	9e-16
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	8e-06
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	1e-15
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	2e-06
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	3e-14
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	7e-10
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	7e-14
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	6e-11
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	3e-12
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	5e-08
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	4e-12
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	1e-11
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	5e-09
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	9e-11
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	2e-04
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	3e-09
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	1e-08
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	8e-08

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.8 bits (197), Expect = 6e-20
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 11 VKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD 63
          + +G W+ EED++LIK V  +G   WS + K     R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.5 bits (134), Expect = 4e-11
 Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 64  LKRGSFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWNSCIK 112
           L +G +T++E++ +I + +  G  RW+ IAKHL GR   + +  W++ + 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.6 bits (186), Expect = 2e-18
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD 63
          +  W+ EEDEKL K V  +G   W  +       R    C+ RW   L P+
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.8 bits (119), Expect = 4e-09
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 66  RGSFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWNSCIK 112
           +  +T +E+  +  +    G + W  IA +LP RTD + ++ W   + 
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.4 bits (180), Expect = 4e-17
 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 6/74 (8%)

Query: 13 RGLWSPEEDEKLIKHVTTHGHG-----SWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG 67
          +  ++ EEDE ++  V  +         +  +         G S R R+  YL   L+  
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYV 59

Query: 68 SFTEQEERIIIDIH 81
             ++  +++ D  
Sbjct: 60 YEVDKFGKLVRDDD 73

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.2 bits (143), Expect = 4e-12
 Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 6/56 (10%)

Query: 66  RGSFTEQEERIIIDIHRILGNR------WAQIAKHLPGRTDNEVKNFWNSCIKKKL 115
           + SFT++E+  I+D+ R    R      + +I+ ++P  T N +++ +   + K+L
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 56

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 71.6 bits (175), Expect = 1e-16
 Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 9/81 (11%)

Query: 16 WSPEEDEKLIKHVTTHGHGSWSSVPKLA---GLQRCGKSCRLRWINYLR-----PDLKRG 67
          +S  E E L++ V   G G W  V   A      R     + +W   +      P  +RG
Sbjct: 3  FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 68 SFTEQEER-IIIDIHRILGNR 87
              Q+    ++  H     +
Sbjct: 63 EPVPQDLLDRVLAAHAYWSQQ 83

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (167), Expect = 9e-16
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 12 KRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQ-RCGKSCRLRWINYLR 61
          KR  W  EED+ L   V  +G G+WS +        R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (94), Expect = 8e-06
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 65  KRGSFTEQEERIIIDIHRILGN-RWAQIAKHLP--GRTDNEVKNFWNSCIK 112
           KR ++  +E++ +    R  G   W++I  H     RT   +K+ W +  K
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (166), Expect = 1e-15
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 12 KRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQ-RCGKSCRLRWINYLRPDL 64
          K+  W+ EE E +   V  +G G+W+++ K      R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 2e-06
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 65  KRGSFTEQEERIIIDIHRILG-NRWAQIAKH--LPGRTDNEVKNFWNSCIKKKL 115
           K+  +T +E   +    +  G   WA I+K+     RT   +K+ W +  +  +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.1 bits (156), Expect = 3e-14
 Identities = 29/47 (61%), Positives = 38/47 (80%)

Query: 66  RGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIK 112
           + S+TE+E+RII   H+ LGNRWA+IAK LPGRTDN +KN WNS ++
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.7 bits (124), Expect = 7e-10
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLR 61
          +  W+ EED  + +     G+        L G  R   + +  W + +R
Sbjct: 1  KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPG--RTDNAIKNHWNSTMR 47

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (154), Expect = 7e-14
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 16 WSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEER 75
          W+ EE E   + +   G   W+ + KL G  R     +     Y +  +K G   E   +
Sbjct: 5  WTIEEKELFEQGLAKFGRR-WTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKETPNQ 62

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (133), Expect = 6e-11
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 69  FTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKL 115
           +T +E+ +        G RW +I+K +  RT  +VK++     K K+
Sbjct: 5   WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV 51

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (143), Expect = 3e-12
 Identities = 9/49 (18%), Positives = 24/49 (48%)

Query: 65  KRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113
               +T +E+ + +   R  G  +  I+  +  ++  +VKNF+ +  ++
Sbjct: 4   CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 52

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (112), Expect = 5e-08
 Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 12 KRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLR 61
              W+ EE    ++ +  +G   + ++  + G  +     +  ++NY R
Sbjct: 4  CNARWTTEEQLLAVQAIRKYGRD-FQAISDVIG-NKSVVQVKNFFVNYRR 51

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (142), Expect = 4e-12
 Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 65  KRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKL 115
               ++EQE+    +        +  IA  L  +T  E   ++    KK  
Sbjct: 16  VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL-TKKNE 65

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (137), Expect = 1e-11
 Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 8  KQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGL--QRCGKSCRLRW 56
          + +     W+  + + L   +  +  GS     K+A     +  + C  R+
Sbjct: 7  RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (118), Expect = 5e-09
 Identities = 6/51 (11%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 61  RPDLKRGSFTEQEERIIIDIHRILG----NRWAQIAKHLPGRTDNEVKNFW 107
           R       +T+ +++++    +       + W +IA+ +P ++  +    +
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (130), Expect = 9e-11
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 16 WSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59
          W+ +E+  L++ V   G G+W  V       +  + C   ++ Y
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 46

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (84), Expect = 2e-04
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 68  SFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWN 108
           S+T QEE  +++     G   W  +A  +  +T  E +  + 
Sbjct: 3   SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYM 44

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.4 bits (123), Expect = 3e-09
 Identities = 14/86 (16%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 30  THGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGNR-- 87
             G     ++PK +    C                K   +T + +R+I+ + +  G +  
Sbjct: 2   PSGSSGAGALPKASEATVCAN-----NSKVSSTGEKVVLWTREADRVILTMCQEQGAQPH 56

Query: 88  -WAQIAKHLPGRTDNEVKNFWNSCIK 112
            ++ I++ L  +T  EV + +   ++
Sbjct: 57  TFSVISQQLGNKTPVEVSHRFRELMQ 82

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 48.4 bits (115), Expect = 1e-08
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 68  SFTEQEERIIIDIHRILG----NRWAQIAKHLPGRTDNEVKNFWNSCIKK-KLIARGIDP 122
            ++ +E +       +      +RWA +A+ + GRT  EVK  +   ++  K I  G  P
Sbjct: 3   PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVP 62

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 46.5 bits (110), Expect = 8e-08
 Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 16 WSPEEDEKLIKHVTTHGHGSWSSVPKLAGL--QRCGKSCRLRWINYLRPDLKR 66
          WS +E++   + +  +   +      +A     R  +  +  +   L  D+K 
Sbjct: 4  WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY-EILVEDIKY 55

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	338
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.7
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.69
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.66
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.63
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.62
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.56
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.56
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.53
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.49
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.46
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.45
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.43
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.42
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.38
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.37
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.32
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.31
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.26
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.25
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.23
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.2
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.19
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.13
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.12
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.07
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.83
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.79
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.49
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.15
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.08
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.6
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.27
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.22
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.19
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.87
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.72
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.45
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	95.37
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	94.68
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	89.04
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	88.79
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	85.25

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=4.1e-20  Score=146.01  Aligned_cols=71  Identities=20%  Similarity=0.268  Sum_probs=65.5

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCC-----CcccccccccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHHc
Q 039070           13 RGLWSPEEDEKLIKHVTTHGHG-----SWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRIL   84 (338)
Q Consensus        13 kg~WT~EEDe~L~~lV~k~G~~-----nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~   84 (338)
                      |++||+|||++|+++|.+||..     +|..||+.|+ +|+++|||+||.++|+|.+++++||++||++|++++..+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lp-gRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~l   76 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   76 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcC-CCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhcc
Confidence            6899999999999999999964     3999999998 999999999999999999999999999999988766544

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=1.6e-18  Score=124.65  Aligned_cols=52  Identities=44%  Similarity=0.831  Sum_probs=50.0

Q ss_pred             CCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCC
Q 039070           11 VKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD   63 (338)
Q Consensus        11 lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~   63 (338)
                      ++||+||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|+|+
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            5799999999999999999999889999999999 999999999999999985

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=4.2e-17  Score=115.00  Aligned_cols=47  Identities=62%  Similarity=1.090  Sum_probs=45.3

Q ss_pred             CCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 039070           66 RGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIK  112 (338)
Q Consensus        66 kg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLk  112 (338)
                      |++||+|||++|+++|++||++|+.||++|||||+++||+||+.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999999875

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.4e-17  Score=118.48  Aligned_cols=50  Identities=34%  Similarity=0.721  Sum_probs=48.0

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCC
Q 039070           13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD   63 (338)
Q Consensus        13 kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~   63 (338)
                      |++||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            68899999999999999999989999999998 999999999999999984

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=1.9e-16  Score=113.61  Aligned_cols=50  Identities=32%  Similarity=0.734  Sum_probs=47.0

Q ss_pred             CCCCCCChHHHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070           64 LKRGSFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWNSCIKK  113 (338)
Q Consensus        64 lkkg~WT~EEDe~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~slLkk  113 (338)
                      ++||+||+|||++|+++|.+|| .+|+.||+.|+|||+.||++||+++|++
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            5799999999999999999999 5799999999999999999999998864

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=1.1e-15  Score=120.41  Aligned_cols=66  Identities=23%  Similarity=0.379  Sum_probs=62.0

Q ss_pred             CCCCChHHHHHHHHHHHHcCCC------HHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCCCCcCCCCCCCCC
Q 039070           66 RGSFTEQEERIIIDIHRILGNR------WAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHNLISPT  131 (338)
Q Consensus        66 kg~WT~EEDe~Ll~lv~~~G~k------Ws~IA~~LpgRT~~qcKnRW~slLkkkl~~~g~~~~e~~~l~pa  131 (338)
                      |++||+|||++|+++|++||.+      |++||++|||||+.|||+||+++|.+.+.+..|+..++..+...
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~   72 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDD   72 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHH
Confidence            6899999999999999999975      99999999999999999999999999999999999999988653

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.56  E-value=1.4e-16  Score=124.36  Aligned_cols=74  Identities=26%  Similarity=0.410  Sum_probs=61.6

Q ss_pred             cCCCHHHHHHHHHHHHHhCCCCcccccccc---cccccCccccceeeccc-----CCCCCCCCCChHHHHHHHHHHHHcC
Q 039070           14 GLWSPEEDEKLIKHVTTHGHGSWSSVPKLA---GLQRCGKSCRLRWINYL-----RPDLKRGSFTEQEERIIIDIHRILG   85 (338)
Q Consensus        14 g~WT~EEDe~L~~lV~k~G~~nW~~IAk~l---g~~Rt~kQCr~RW~n~L-----~p~lkkg~WT~EEDe~Ll~lv~~~G   85 (338)
                      .+||+|||++|+++|++||.++|..|++.+   .++|++.||++||+++|     .+..+++.|+++|   |+..|..++
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~   77 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAH   77 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHH
Confidence            489999999999999999999999999753   34899999999999988     4678899999877   555555555


Q ss_pred             CCHHH
Q 039070           86 NRWAQ   90 (338)
Q Consensus        86 ~kWs~   90 (338)
                      .+|++
T Consensus        78 ~~wsq   82 (83)
T d2ckxa1          78 AYWSQ   82 (83)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            67764

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=5.2e-15  Score=105.02  Aligned_cols=48  Identities=25%  Similarity=0.545  Sum_probs=45.1

Q ss_pred             CCCCChHHHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070           66 RGSFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWNSCIKK  113 (338)
Q Consensus        66 kg~WT~EEDe~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~slLkk  113 (338)
                      |++||+|||++|+++|.+|| ++|.+||..|+|||+.||++||+++|.+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            57999999999999999999 5799999999999999999999998864

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.2e-15  Score=110.50  Aligned_cols=53  Identities=26%  Similarity=0.463  Sum_probs=48.6

Q ss_pred             CccCCCHHHHHHHHHHHHHhCCCCccccccc--ccccccCccccceeecccCCCCC
Q 039070           12 KRGLWSPEEDEKLIKHVTTHGHGSWSSVPKL--AGLQRCGKSCRLRWINYLRPDLK   65 (338)
Q Consensus        12 kkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~--lg~~Rt~kQCr~RW~n~L~p~lk   65 (338)
                      ||++||+|||++|+++|++||.++|..||+.  ++ +|++.||++||++++++.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~-~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFV-NRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCS-SCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCC-CcCHHHHHHHHHHHhcCCCC
Confidence            5789999999999999999999999999986  44 89999999999999988764

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=4.8e-14  Score=100.82  Aligned_cols=48  Identities=27%  Similarity=0.455  Sum_probs=43.9

Q ss_pred             CCCCCChHHHHHHHHHHHHcCC-CHHHHHhhC--CCCCHHHHHHHHHHHhh
Q 039070           65 KRGSFTEQEERIIIDIHRILGN-RWAQIAKHL--PGRTDNEVKNFWNSCIK  112 (338)
Q Consensus        65 kkg~WT~EEDe~Ll~lv~~~G~-kWs~IA~~L--pgRT~~qcKnRW~slLk  112 (338)
                      ++++||+|||+.|+++|.+||. +|+.||+.+  .|||+.||++||+++.|
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            5789999999999999999995 899999985  59999999999998764

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.6e-14  Score=101.95  Aligned_cols=50  Identities=24%  Similarity=0.409  Sum_probs=45.6

Q ss_pred             CCCCCChHHHHHHHHHHHHcC-CCHHHHHhh--CCCCCHHHHHHHHHHHhhhH
Q 039070           65 KRGSFTEQEERIIIDIHRILG-NRWAQIAKH--LPGRTDNEVKNFWNSCIKKK  114 (338)
Q Consensus        65 kkg~WT~EEDe~Ll~lv~~~G-~kWs~IA~~--LpgRT~~qcKnRW~slLkkk  114 (338)
                      ++.+||+|||++|+++|++|| .+|+.||+.  +++||+.+|++||++++++.
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~   53 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   53 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCC
Confidence            478999999999999999999 479999998  56999999999999988764

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1e-13  Score=102.43  Aligned_cols=53  Identities=25%  Similarity=0.360  Sum_probs=48.5

Q ss_pred             CCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHHhC
Q 039070           66 RGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIAR  118 (338)
Q Consensus        66 kg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~~  118 (338)
                      ...||+|||++|++++..||.+|..||++|++||+.+|++||+.++++..+.+
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~   54 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCG   54 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSC
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcC
Confidence            46899999999999999999999999999999999999999999988765443

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=8.8e-15  Score=104.75  Aligned_cols=50  Identities=30%  Similarity=0.444  Sum_probs=44.7

Q ss_pred             CccCCCHHHHHHHHHHHHHhCCCCccccccccc-ccccCccccceeecccC
Q 039070           12 KRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAG-LQRCGKSCRLRWINYLR   61 (338)
Q Consensus        12 kkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg-~~Rt~kQCr~RW~n~L~   61 (338)
                      ++++||+|||++|+++|++||.++|..||+.++ .+|++.||++||+++.+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            689999999999999999999999999998643 37999999999998653

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.6e-14  Score=101.43  Aligned_cols=44  Identities=23%  Similarity=0.647  Sum_probs=42.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecc
Q 039070           15 LWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINY   59 (338)
Q Consensus        15 ~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~   59 (338)
                      .||+|||++|+++|++||.++|..||+.|| +|++.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~-~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            599999999999999999999999999999 99999999999886

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=3.4e-14  Score=99.81  Aligned_cols=47  Identities=23%  Similarity=0.546  Sum_probs=44.2

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccC
Q 039070           13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLR   61 (338)
Q Consensus        13 kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~   61 (338)
                      |++||+|||++|+++|++||. +|..||+.|+ +|++.||+.||.++|+
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLP-GRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCT-TCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcC-CCCHHHHHHHHHHHcC
Confidence            689999999999999999996 8999999998 9999999999998764

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=8.9e-13  Score=92.33  Aligned_cols=43  Identities=23%  Similarity=0.436  Sum_probs=40.7

Q ss_pred             CCChHHHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHH
Q 039070           68 SFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWNSC  110 (338)
Q Consensus        68 ~WT~EEDe~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~sl  110 (338)
                      .||+|||++|+++|.+|| ++|..||++|+|||+.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 4699999999999999999999875

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.7e-12  Score=94.85  Aligned_cols=51  Identities=12%  Similarity=0.285  Sum_probs=46.0

Q ss_pred             cCCCCCCCCCChHHHHHHHHHHHHcCC----CHHHHHhhCCCCCHHHHHHHHHHH
Q 039070           60 LRPDLKRGSFTEQEERIIIDIHRILGN----RWAQIAKHLPGRTDNEVKNFWNSC  110 (338)
Q Consensus        60 L~p~lkkg~WT~EEDe~Ll~lv~~~G~----kWs~IA~~LpgRT~~qcKnRW~sl  110 (338)
                      ..+...+++||+|||++|++++.+||.    +|.+||++|||||+.||+.||+.+
T Consensus         6 ~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           6 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             ccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            345677899999999999999999995    599999999999999999999764

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=5.7e-12  Score=100.45  Aligned_cols=69  Identities=14%  Similarity=0.183  Sum_probs=62.6

Q ss_pred             cccCccccceeecccCCCCCCCCCChHHHHHHHHHHHHcCCC---HHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 039070           46 QRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGNR---WAQIAKHLPGRTDNEVKNFWNSCIKKK  114 (338)
Q Consensus        46 ~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G~k---Ws~IA~~LpgRT~~qcKnRW~slLkkk  114 (338)
                      ..+..++..++.+..++..+...||.|||+.|++.++++|.+   |..||+.|+|||+++||+||+.+++-.
T Consensus        13 ~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf   84 (95)
T d1ug2a_          13 KASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             CCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            567777888888888888888999999999999999999987   999999999999999999999988753

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=7.7e-13  Score=96.66  Aligned_cols=52  Identities=12%  Similarity=0.344  Sum_probs=47.5

Q ss_pred             CccCCCCccCCCHHHHHHHHHHHHHhCCC---CcccccccccccccCccccceeec
Q 039070            6 CSKQKVKRGLWSPEEDEKLIKHVTTHGHG---SWSSVPKLAGLQRCGKSCRLRWIN   58 (338)
Q Consensus         6 c~K~~lkkg~WT~EEDe~L~~lV~k~G~~---nW~~IAk~lg~~Rt~kQCr~RW~n   58 (338)
                      -++++.++++||+|||++|+++|.+||.+   +|..||+.|| +|++.||+.||..
T Consensus         5 ~~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~-~Rt~~qc~~R~~~   59 (60)
T d2cqra1           5 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKL   59 (60)
T ss_dssp             CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHH
T ss_pred             cccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            35778899999999999999999999976   4999999999 9999999999964

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.23  E-value=6.5e-12  Score=92.56  Aligned_cols=47  Identities=23%  Similarity=0.520  Sum_probs=43.0

Q ss_pred             CCCChHHHHHHHHHHHHcCC----CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070           67 GSFTEQEERIIIDIHRILGN----RWAQIAKHLPGRTDNEVKNFWNSCIKK  113 (338)
Q Consensus        67 g~WT~EEDe~Ll~lv~~~G~----kWs~IA~~LpgRT~~qcKnRW~slLkk  113 (338)
                      .+||+|||++|+++++.||.    +|.+||.+|+|||+.||++||+.+++.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~d   52 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED   52 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            47999999999999999995    499999999999999999999876653

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.9e-13  Score=99.98  Aligned_cols=58  Identities=24%  Similarity=0.387  Sum_probs=52.1

Q ss_pred             cCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHH
Q 039070           14 GLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQE   73 (338)
Q Consensus        14 g~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EE   73 (338)
                      .+||+|||++|+++|..|| .+|..||+.|| +|+..||+.||.+++++..+.+.+...+
T Consensus         3 ~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~-~Rt~~q~k~ry~~~~~~~~k~~~~~~~~   60 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFG-RRWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKETP   60 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTC-SCHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCSCTTCCCS
T ss_pred             CCCCHHHHHHHHHHHHHhc-chHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence            5799999999999999999 59999999999 9999999999999998877777765543

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.19  E-value=1.3e-11  Score=95.78  Aligned_cols=50  Identities=24%  Similarity=0.484  Sum_probs=45.1

Q ss_pred             CCChHHHHHHHHHHHHcCC-CHHHHHhh----CCCCCHHHHHHHHHHHhhhHHHh
Q 039070           68 SFTEQEERIIIDIHRILGN-RWAQIAKH----LPGRTDNEVKNFWNSCIKKKLIA  117 (338)
Q Consensus        68 ~WT~EEDe~Ll~lv~~~G~-kWs~IA~~----LpgRT~~qcKnRW~slLkkkl~~  117 (338)
                      +||.|||++|+++|.+||. +|+.|++.    +++||+.+|++||+++++.....
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~   56 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIA   56 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccC
Confidence            8999999999999999995 89999986    68999999999999999865443

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2.3e-11  Score=89.85  Aligned_cols=47  Identities=19%  Similarity=0.372  Sum_probs=44.2

Q ss_pred             CCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 039070           66 RGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIK  112 (338)
Q Consensus        66 kg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLk  112 (338)
                      +.+||++|+++|++++..||.+|..||++|+|||..+|++||+...+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            46799999999999999999999999999999999999999988664

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.1e-11  Score=90.89  Aligned_cols=48  Identities=17%  Similarity=0.131  Sum_probs=44.2

Q ss_pred             CCCCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHh
Q 039070           64 LKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCI  111 (338)
Q Consensus        64 lkkg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slL  111 (338)
                      ....+||+||+++|++++.+||.+|..||++|+|||..+|++||+...
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            445789999999999999999999999999999999999999998644

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.07  E-value=6.6e-12  Score=92.53  Aligned_cols=44  Identities=14%  Similarity=0.368  Sum_probs=40.9

Q ss_pred             cCCCHHHHHHHHHHHHHhCCCC---cccccccccccccCccccceeec
Q 039070           14 GLWSPEEDEKLIKHVTTHGHGS---WSSVPKLAGLQRCGKSCRLRWIN   58 (338)
Q Consensus        14 g~WT~EEDe~L~~lV~k~G~~n---W~~IAk~lg~~Rt~kQCr~RW~n   58 (338)
                      .+||+|||++|+++|++||.++   |.+||+.|+ +|++.||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~-gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            5799999999999999999865   999999999 9999999999953

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.7e-10  Score=85.81  Aligned_cols=51  Identities=16%  Similarity=0.335  Sum_probs=45.7

Q ss_pred             cCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeeccc
Q 039070            8 KQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL   60 (338)
Q Consensus         8 K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L   60 (338)
                      +++....+||+|||++|++++.+||. +|..||+.|+ +|+..||+.||....
T Consensus        12 ~~~~~~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~-~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          12 KDRQVMNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYLTK   62 (68)
T ss_dssp             TSTTTTTCCCTTTHHHHHHHHHHTTS-CSSSHHHHTT-TSCHHHHHHHHHHHT
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHCC-cHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            45666789999999999999999995 9999999999 999999999997643

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=4e-10  Score=82.96  Aligned_cols=47  Identities=17%  Similarity=0.435  Sum_probs=43.3

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccC
Q 039070           13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLR   61 (338)
Q Consensus        13 kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~   61 (338)
                      ..+||++||++|.+++..||. +|..||+.|| +|+..||+.||.++.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~-~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCc-hHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            467999999999999999995 8999999999 9999999999988653

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=7.2e-09  Score=82.24  Aligned_cols=50  Identities=18%  Similarity=0.339  Sum_probs=44.1

Q ss_pred             CCCCccCCCHHHHHHHHHHHHHhCCC--CcccccccccccccCccccceeecc
Q 039070            9 QKVKRGLWSPEEDEKLIKHVTTHGHG--SWSSVPKLAGLQRCGKSCRLRWINY   59 (338)
Q Consensus         9 ~~lkkg~WT~EEDe~L~~lV~k~G~~--nW~~IAk~lg~~Rt~kQCr~RW~n~   59 (338)
                      +..+...||.|||+.|++.++++|..  .|..||+.|+ +|++.|||.||+..
T Consensus        29 ~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~-~Rs~~qvr~Rf~~L   80 (95)
T d1ug2a_          29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL   80 (95)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred             CCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            44567889999999999999999963  2999999998 99999999999763

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.15  E-value=2e-06  Score=61.67  Aligned_cols=44  Identities=11%  Similarity=0.289  Sum_probs=40.5

Q ss_pred             CCCChHHHHHHHHHHHHcCCCHHHHHhh-CCCCCHHHHHHHHHHH
Q 039070           67 GSFTEQEERIIIDIHRILGNRWAQIAKH-LPGRTDNEVKNFWNSC  110 (338)
Q Consensus        67 g~WT~EEDe~Ll~lv~~~G~kWs~IA~~-LpgRT~~qcKnRW~sl  110 (338)
                      ..||+||..++.+++..||.+|..|++. +|+||..+|.++|...
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~~   46 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4799999999999999999999999986 5999999999999753

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=1.7e-06  Score=62.86  Aligned_cols=44  Identities=23%  Similarity=0.325  Sum_probs=40.1

Q ss_pred             CCCChHHHHHHHHHHHHcC----CCHHHHHhhCCCCCHHHHHHHHHHHh
Q 039070           67 GSFTEQEERIIIDIHRILG----NRWAQIAKHLPGRTDNEVKNFWNSCI  111 (338)
Q Consensus        67 g~WT~EEDe~Ll~lv~~~G----~kWs~IA~~LpgRT~~qcKnRW~slL  111 (338)
                      +.||.+|+.+|.+++.+|.    .+|.+||..+ |||..+|..|++.+.
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            5799999999999999996    5699999999 999999999997544

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=4.2e-06  Score=60.67  Aligned_cols=44  Identities=16%  Similarity=0.343  Sum_probs=39.4

Q ss_pred             cCCCHHHHHHHHHHHHHhCCC---CcccccccccccccCccccceeecc
Q 039070           14 GLWSPEEDEKLIKHVTTHGHG---SWSSVPKLAGLQRCGKSCRLRWINY   59 (338)
Q Consensus        14 g~WT~EEDe~L~~lV~k~G~~---nW~~IAk~lg~~Rt~kQCr~RW~n~   59 (338)
                      +.||++|+.+|.+++.+|+.|   .|.+||+.+|  |+..+|..||...
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg--kt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence            579999999999999999864   4999999996  9999999998653

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.00015  Score=52.33  Aligned_cols=47  Identities=19%  Similarity=0.357  Sum_probs=40.7

Q ss_pred             CCCCChHHHHHHHHHHHHcC--------CC-HHHHHh-hCCCCCHHHHHHHHHHHhh
Q 039070           66 RGSFTEQEERIIIDIHRILG--------NR-WAQIAK-HLPGRTDNEVKNFWNSCIK  112 (338)
Q Consensus        66 kg~WT~EEDe~Ll~lv~~~G--------~k-Ws~IA~-~LpgRT~~qcKnRW~slLk  112 (338)
                      |.+||.|||+.|++.|+++.        +. |..+++ .++.+|-.+.|+||...||
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            56899999999999999873        33 999996 6799999999999987765

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=3.6e-05  Score=54.89  Aligned_cols=43  Identities=12%  Similarity=0.129  Sum_probs=38.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccc-ccccccCccccceeecc
Q 039070           15 LWSPEEDEKLIKHVTTHGHGSWSSVPKL-AGLQRCGKSCRLRWINY   59 (338)
Q Consensus        15 ~WT~EEDe~L~~lV~k~G~~nW~~IAk~-lg~~Rt~kQCr~RW~n~   59 (338)
                      .||+||-.++.+++..||. +|..|++. +| +|+..||...|...
T Consensus         3 ~WT~eE~~~F~~~~~~yGK-df~~I~~~~v~-~Ks~~~~v~fYY~~   46 (57)
T d2crga1           3 EWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcc-cHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            6999999999999999995 99999985 56 99999999877643

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.19  E-value=0.00051  Score=46.86  Aligned_cols=46  Identities=24%  Similarity=0.466  Sum_probs=40.4

Q ss_pred             CCCCChHHHHHHHHHHHHcCCCHHHHHhhC---CCCCHHHHHHHHHHHh
Q 039070           66 RGSFTEQEERIIIDIHRILGNRWAQIAKHL---PGRTDNEVKNFWNSCI  111 (338)
Q Consensus        66 kg~WT~EEDe~Ll~lv~~~G~kWs~IA~~L---pgRT~~qcKnRW~slL  111 (338)
                      +..||.||..-|.+.|+.+|+.|..|-=.+   +||+..++..+|+.++
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l~   49 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLI   49 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhhC
Confidence            347999999999999999999999996554   8999999999998753

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.87  E-value=0.0011  Score=48.40  Aligned_cols=46  Identities=15%  Similarity=0.109  Sum_probs=39.3

Q ss_pred             CCCCChHHHHHHHHHHHHcCCCH---HHHHhhC--CCCCHHHHHHHHHHHh
Q 039070           66 RGSFTEQEERIIIDIHRILGNRW---AQIAKHL--PGRTDNEVKNFWNSCI  111 (338)
Q Consensus        66 kg~WT~EEDe~Ll~lv~~~G~kW---s~IA~~L--pgRT~~qcKnRW~slL  111 (338)
                      +-.||+||.++.++++..||..|   ..|.+.|  +|+|..+|+.|.+.+.
T Consensus         7 R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYr   57 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            45799999999999999999887   5777774  8999999999876643

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.00024  Score=51.13  Aligned_cols=48  Identities=23%  Similarity=0.416  Sum_probs=40.1

Q ss_pred             ccCCCHHHHHHHHHHHHHhCC------CC--cccccc-cccccccCccccceeecccC
Q 039070           13 RGLWSPEEDEKLIKHVTTHGH------GS--WSSVPK-LAGLQRCGKSCRLRWINYLR   61 (338)
Q Consensus        13 kg~WT~EEDe~L~~lV~k~G~------~n--W~~IAk-~lg~~Rt~kQCr~RW~n~L~   61 (338)
                      |.+||.|||+.|+++|+++..      |+  |..+++ .++ .++..+-|+||.+.|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~-~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhc
Confidence            578999999999999999853      22  999985 455 8999999999998875

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.016  Score=42.62  Aligned_cols=49  Identities=14%  Similarity=0.231  Sum_probs=42.6

Q ss_pred             CCCCCCChHHHHHHHHHHHHcCCC----HHHHHhhCCCCCHHHHHHHHHHHhh
Q 039070           64 LKRGSFTEQEERIIIDIHRILGNR----WAQIAKHLPGRTDNEVKNFWNSCIK  112 (338)
Q Consensus        64 lkkg~WT~EEDe~Ll~lv~~~G~k----Ws~IA~~LpgRT~~qcKnRW~slLk  112 (338)
                      ...+.|+++|=++|-.++..+...    |+.+|..+..||+.+|..+|...++
T Consensus         6 t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~   58 (73)
T d1wgxa_           6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR   58 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred             CcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCcc
Confidence            345799999999999999998843    9999999999999999999987543

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.37  E-value=0.0021  Score=46.77  Aligned_cols=51  Identities=20%  Similarity=0.237  Sum_probs=37.5

Q ss_pred             CCCCccCCCHHHHHHHHHHHHHhCCCCc--cccccccc-ccccCccccceeecc
Q 039070            9 QKVKRGLWSPEEDEKLIKHVTTHGHGSW--SSVPKLAG-LQRCGKSCRLRWINY   59 (338)
Q Consensus         9 ~~lkkg~WT~EEDe~L~~lV~k~G~~nW--~~IAk~lg-~~Rt~kQCr~RW~n~   59 (338)
                      ++..+-.||+||-++.+++|+.+|.+.|  ..|.+.|+ .+++..|++-|.++|
T Consensus         3 ~kk~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            4556778999999999999999996444  45666543 267778887665544

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.0042  Score=45.84  Aligned_cols=56  Identities=23%  Similarity=0.380  Sum_probs=45.4

Q ss_pred             CccCCCCccCCCHHHHHHHHHHHHHhC---CCCcccccccccccccCccccceeecccCC
Q 039070            6 CSKQKVKRGLWSPEEDEKLIKHVTTHG---HGSWSSVPKLAGLQRCGKSCRLRWINYLRP   62 (338)
Q Consensus         6 c~K~~lkkg~WT~EEDe~L~~lV~k~G---~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p   62 (338)
                      |.+.....+.|+++|=++|-.++....   .|-|..||..+| .|++..|...|...+.-
T Consensus         1 ~~~g~t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VG-tRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           1 GSSGSSGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             CCCCCCSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred             CCCCcCcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHc-cCCHHHHHHHHHhCccc
Confidence            334445567899999999999998654   456999999999 99999999998776543

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.04  E-value=0.54  Score=32.30  Aligned_cols=43  Identities=23%  Similarity=0.350  Sum_probs=38.2

Q ss_pred             CCChHHHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHH
Q 039070           68 SFTEQEERIIIDIHRILGN-RWAQIAKHLPGRTDNEVKNFWNSC  110 (338)
Q Consensus        68 ~WT~EEDe~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~sl  110 (338)
                      .|+..|=+.++++..+||. +-..||..|.|+|..+|+.+....
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vF   44 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVF   44 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHH
Confidence            4999999999999999994 799999999999999998865443

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.79  E-value=0.46  Score=38.24  Aligned_cols=52  Identities=23%  Similarity=0.389  Sum_probs=42.3

Q ss_pred             CCCCCCCChHHHHHHHHHHHHcC-CC---HHHHHh------------hCCCCCHHHHHHHHHHHhhhH
Q 039070           63 DLKRGSFTEQEERIIIDIHRILG-NR---WAQIAK------------HLPGRTDNEVKNFWNSCIKKK  114 (338)
Q Consensus        63 ~lkkg~WT~EEDe~Ll~lv~~~G-~k---Ws~IA~------------~LpgRT~~qcKnRW~slLkkk  114 (338)
                      ..++..+|+|||.-|+-.+.+|| .+   |..|-.            .+..||+.++..|-+++++-.
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLI  113 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHH
Confidence            44455799999999999999999 33   988743            236799999999999998754

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.25  E-value=0.27  Score=33.03  Aligned_cols=44  Identities=23%  Similarity=0.241  Sum_probs=33.4

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCccccccccc--ccccCccccceee
Q 039070           13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAG--LQRCGKSCRLRWI   57 (338)
Q Consensus        13 kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg--~~Rt~kQCr~RW~   57 (338)
                      |..||.||-.-|...|+++|. .|..|-=..|  .||+.......|+
T Consensus         1 Rknft~eEv~YL~~GVK~~G~-~WNsILWs~PF~~GR~~vdLA~Ky~   46 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYH   46 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcc-hhhhhhhccCCCCCchhhHHHHHHH
Confidence            457999999999999999995 9999874333  3677665555543