Citrus Sinensis ID: 039152

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
LGLFQGIKNIKEARARVHTLVNKLKAFCMLLDDDENIFMHDVACDVAISITSREQNMFTATDELVSGWEWSDEGRKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFVNKLVKVGSSQLKYL
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHccccccEEEccccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccHHHHcccccccccccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccEEEccccccHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHHHcccccccccEcHHHHHHHHHHHHHHcccccEEEccEEEEccccHHHHccccccEccHHHHHHccccEEEEccccccccccccHHHHHHHHHEEHcccccccHHHHHHHHHHcEEEcccccHHHccHHHHHHHccEEEEcccccccEEcccccccccccEEEEEEccccccccccEHHHHHHHcccccccEEccccEEEEEEEccccHHHHHHHHHHHHHHHHccccHHHccc
Coil and Loop (DISEMBL)
LGLFQGIKNIKEARARVHTLVNKLKAFCMLldddenifmHDVACDVAISITSREQNMFTATDELvsgwewsdegrknsffaIPQNLLRSMLQVRVLDLtdmnllslpssiglltnLHTLCLYSCILKDMAVISDLKKLEILCLhgssiyqlpvevgqltqlrsldlrhcsnlqviplnkhlpnltslelevndantlprgglflekperidldanvrlkdqdtvqlWGIEELSLAELLDHIKNFVNKLVKVgssqlkyl
Flexible Loop (DISEMBL)
LGLFQGIKNIKEARARVHTLVNKLKAFCMLLDDDENIFMHDVACDVAISITSREQNMFTATDELVSGWEWSDEGRKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFVNKLVkvgssqlkyl
Low Complexity Region (SEG)
LGLFQGIKNIKEARARVHTLVNKLKAFCMLLDDDENIFMHDVACDVAISITSREQNMFTATDELVSGWEWSDEGRKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFVNKLVKVGSSQLKYL
Disordered region (IsUnstruct)
***FQGIKNIKEARARVHTLVNKLKAFCMLLDDDENIFMHDVACDVAISITSREQNMFTATDELVSGWEWSDEGRKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFVNKLVKV********
Disordered Region (DISOPRED)
LGLFQGIKNIKEARARVHTLVNKLKAFCMLLDDDENIFMHDVACDVAISITSREQNMFTA*DE**SGWEWSDEGRKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFVNKLVKVGSSQLKYL
Disordered Region (DISEMBL)
LGLFQGIKNIKEARARVHTLVNKLKAFCMLLDDDENIFMHDVACDVAISITSREQNMFTATDELVSGWEWSDEGRKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFVNKLVKVGSSQLKYL
Disordered Region (DISPRO)
LGLFQGIKNIKEARARVHTLVNKLKAFCMLLDDDENIFMHDVACDVAISITSREQNMFTATDELVSGWEWSDEGRKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFVNKLVKVGSSQL**L
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LGLFQGIKNIKEARARVHTLVNKLKAFCMLLDDDENIFMHDVACDVAISITSREQNMFTATDELVSGWEWSDEGRKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFVNKLVKVGSSQLKYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	259	2.2.26 [Sep-21-2011]
O81825	919	Probable disease resistan	yes	no	0.710	0.200	0.315	2e-06
Q9T048	985	Disease resistance protei	no	no	0.652	0.171	0.285	2e-06
Q9RBS2	1024	Protein PopC OS=Ralstonia	yes	no	0.440	0.111	0.309	4e-06
O61967	699	Protein lap1 OS=Caenorhab	yes	no	0.532	0.197	0.306	6e-06
Q6DHL5	238	Leucine-rich repeat-conta	yes	no	0.328	0.357	0.348	1e-05
Q7XBQ9	970	Disease resistance protei	N/A	no	0.451	0.120	0.290	1e-05
Q14160	1630	Protein scribble homolog	yes	no	0.528	0.084	0.319	3e-05
Q80U72	1612	Protein scribble homolog	yes	no	0.528	0.084	0.319	4e-05
Q01631	2300	Adenylate cyclase OS=Neur	N/A	no	0.320	0.036	0.364	8e-05
B0W6M9	628	Leucine-rich repeat prote	N/A	no	0.590	0.243	0.298	0.0001

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 92/206 (44%), Gaps = 22/206 (10%)

Query: 2   GLFQGIKNIKEARARVHTLVNKLKAFCMLLDDD--ENIFMHDVACDVAISITSREQNMFT 59
           GL  G  + ++      TLV +LK  C+L D D  + + MHDV  D AI   S +   F 
Sbjct: 392 GLLDGQHHYEDMMNEGVTLVERLKDSCLLEDGDSCDTVKMHDVVRDFAIWFMSSQGEGFH 451

Query: 60  ATDELVSGWEWSDEGRKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTL 119
           +   LV        GR       PQ+   S +Q RV  L    L  LP+++  +  + TL
Sbjct: 452 S---LVMA------GR--GLIEFPQDKFVSSVQ-RV-SLMANKLERLPNNV--IEGVETL 496

Query: 120 CLY---SCILKDM--AVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQV 174
            L    +  +K++    +     L IL L G  I  LP     L  LRSL LR+C  L+ 
Sbjct: 497 VLLLQGNSHVKEVPNGFLQAFPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLRNCKKLRN 556

Query: 175 IPLNKHLPNLTSLELEVNDANTLPRG 200
           +P  + L  L  L+L  +    LPRG
Sbjct: 557 LPSLESLVKLQFLDLHESAIRELPRG 582

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 94/210 (44%), Gaps = 41/210 (19%)

Query: 19  TLVNKLKAFCMLLDDD--ENIFMHDVACDVAISITSREQ--------------------- 55
           T V  LK +C+L D D  + + MHDV  D AI I S  Q                     
Sbjct: 440 TTVESLKDYCLLEDGDRRDTVKMHDVVRDFAIWIMSSSQDDSHSLVMSGTGLQDIRQDKL 499

Query: 56  -----------NMFTATDELVSGW--EWSDEGRKNSFF--AIPQNLLRSMLQVRVLDLTD 100
                      N   +  +LV  +  + S    + +F    +P   L++   +R+L+L+ 
Sbjct: 500 APSLRRVSLMNNKLESLPDLVEEFCVKTSVLLLQGNFLLKEVPIGFLQAFPTLRILNLSG 559

Query: 101 MNLLSLPS-SIGLLTNLHTLCLYSCI-LKDMAVISDLKKLEILCLHGSSIYQLPVEVGQL 158
             + S PS S+  L +LH+L L  C  L  +  +  L KLE+L L G+ I + P  + +L
Sbjct: 560 TRIKSFPSCSLLRLFSLHSLFLRDCFKLVKLPSLETLAKLELLDLCGTHILEFPRGLEEL 619

Query: 159 TQLRSLDLRHCSNLQVIPLNKHLPNLTSLE 188
            + R LDL    +L+ IP  + +  L+SLE
Sbjct: 620 KRFRHLDLSRTLHLESIP-ARVVSRLSSLE 648

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2

 Score = 52.0 bits (123), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 25/139 (17%)

Query: 96  LDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEIL-------CLHGSSI 148
           L L++  L +LPSSIG L+NL  L L +    ++   S ++KLE +       C+    +
Sbjct: 595 LSLSNTQLRALPSSIGKLSNLKGLTLKNNARLELLSESGVRKLESVRKIDLSGCVR---L 651

Query: 149 YQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPE 208
             LP  +G+L +LR+LDL  C+ L +  L + L               LPR GL +  PE
Sbjct: 652 TGLPSSIGKLPKLRTLDLSGCTGLSMASLPRSL--------------VLPRDGLNVIFPE 697

Query: 209 RIDLD-ANVRLKDQDTVQL 226
            +  D  N R++     +L
Sbjct: 698 HLKTDVGNARIQQNPRARL 716

Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

>sp|O61967|LAP1_CAEEL Protein lap1 OS=Caenorhabditis elegans GN=let-413 PE=1 SV=3

 Score = 51.6 bits (122), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 78/163 (47%), Gaps = 25/163 (15%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAV-ISDL 135
           N F  +P+ +      + +L L + +L  LPS+IG LTNL  L     +L+ + + I +L
Sbjct: 115 NPFTRLPETICECS-SITILSLNETSLTLLPSNIGSLTNLRVLEARDNLLRTIPLSIVEL 173

Query: 136 KKLEILCLHGSSIYQLPVEVGQLTQLRS--------------------LDLRHCSNLQVI 175
           +KLE L L  + +  LP E+G+LT LR                     LD    S  Q+I
Sbjct: 174 RKLEELDLGQNELEALPAEIGKLTSLREFYVDINSLTSLPDSISGCRMLDQLDVSENQII 233

Query: 176 PLNKHL---PNLTSLELEVNDANTLPRGGLFLEKPERIDLDAN 215
            L ++L   PNLT L + +N+   LP     L++ + +  D N
Sbjct: 234 RLPENLGRMPNLTDLNISINEIIELPSSFGELKRLQMLKADRN 276

Critical role in assembling adherens junctions; adapter protein involved in polarizing protein trafficking in epithelial cells. Necessary to maintain, not establish, the entire terminal web (organelle-depleted, intermediate filament-rich layer of cytoplasm that underlies the apical microvilli of polarized epithelial cells) or brush border assembly at the apical surface gut cells. Required for correct localization of ifb-2 intermediate filaments in the terminal web.

Caenorhabditis elegans (taxid: 6239)

>sp|Q6DHL5|LRC57_DANRE Leucine-rich repeat-containing protein 57 OS=Danio rerio GN=lrrc57 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 82  IPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAV-ISDLKKLEI 140
            P++L +    +R +DL++  +  LP+ IG   +L +  +    L  +   I  LKKLE 
Sbjct: 29  FPEDLQKLTANLRTVDLSNNKIEELPAFIGSFQHLKSFTISCNKLTSLPNDIGKLKKLET 88

Query: 141 LCLHGSSIYQLPVEVGQLTQLRSLDL 166
           L L+G+ + QLP  +GQL  LR+L L
Sbjct: 89  LILNGNQLKQLPSSIGQLKSLRTLSL 114

Danio rerio (taxid: 7955)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 38/155 (24%)

Query: 31  LDDDENIF-MHDVACDVAISITS--------REQNMFTATDELVSGWEWSDEGRKNSFFA 81
           + D +  F MHD+  D+A S+ S        RE N  + T  +  G+          F+ 
Sbjct: 464 VKDGKTYFKMHDLIHDLATSLFSANTSSSNIREINKHSYTHMMSIGF-----AEVVFFYT 518

Query: 82  IPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEIL 141
           +P   L   + +RVL+L D     LPSSIG                      DL  L  L
Sbjct: 519 LPP--LEKFISLRVLNLGDSTFNKLPSSIG----------------------DLVHLRYL 554

Query: 142 CLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIP 176
            L+GS +  LP ++ +L  L++LDL++C+ L  +P
Sbjct: 555 NLYGSGMRSLPKQLCKLQNLQTLDLQYCTKLCCLP 589

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q14160|SCRIB_HUMAN Protein scribble homolog OS=Homo sapiens GN=SCRIB PE=1 SV=4

 Score = 49.3 bits (116), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/141 (31%), Positives = 66/141 (46%), Gaps = 4/141 (2%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMA-VISDL 135
           N    +P+   R +L +R L L+D  +  LP  +     L  L +    + ++   I   
Sbjct: 46  NQLRELPKPFFR-LLNLRKLGLSDNEIQRLPPEVANFMQLVELDVSRNDIPEIPESIKFC 104

Query: 136 KKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDA 194
           K LEI    G+ + +LP    QL  L  L L   S LQ +P +  +L NL +LEL  N  
Sbjct: 105 KALEIADFSGNPLSRLPDGFTQLRSLAHLALNDVS-LQALPGDVGNLANLVTLELRENLL 163

Query: 195 NTLPRGGLFLEKPERIDLDAN 215
            +LP    FL K E++DL  N
Sbjct: 164 KSLPASLSFLVKLEQLDLGGN 184

Scaffold protein involved in different aspects of polarized cells differentiation regulating epithelial and neuronal morphogenesis. Most probably functions in the establishment of apico-basal cell polarity. May function in cell proliferation regulating progression from G1 to S phase and as a positive regulator of apoptosis for instance during acinar morphogenesis of the mammary epithelium. May also function in cell migration and adhesion and hence regulate cell invasion through MAPK signaling. May play a role in exocytosis and in the targeting synaptic vesicles to synapses. Functions as an activator of Rac GTPase activity.

Homo sapiens (taxid: 9606)

>sp|Q80U72|SCRIB_MOUSE Protein scribble homolog OS=Mus musculus GN=Scrib PE=1 SV=2

 Score = 48.5 bits (114), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/141 (31%), Positives = 66/141 (46%), Gaps = 4/141 (2%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMA-VISDL 135
           N    +P+   R +L +R L L+D  +  LP  +     L  L +    + ++   I   
Sbjct: 46  NQLRELPKPFFR-LLNLRKLGLSDNEIQRLPPEVANFMQLVELDVSRNDIPEIPESIKFC 104

Query: 136 KKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDA 194
           K LEI    G+ + +LP    QL  L  L L   S LQ +P +  +L NL +LEL  N  
Sbjct: 105 KALEIADFSGNPLSRLPDGFTQLRSLAHLALNDVS-LQALPGDVGNLANLVTLELRENLL 163

Query: 195 NTLPRGGLFLEKPERIDLDAN 215
            +LP    FL K E++DL  N
Sbjct: 164 KSLPASLSFLVKLEQLDLGGN 184

Scaffold protein involved in different aspects of polarized cells differentiation regulating epithelial and neuronal morphogenesis. Most probably functions in the establishment of apico-basal cell polarity. May function in cell proliferation regulating progression from G1 to S phase and as a positive regulator of apoptosis for instance during acinar morphogenesis of the mammary epithelium. May also function in cell migration and adhesion and hence regulate cell invasion through MAPK signaling. May play a role in exocytosis and in the targeting synaptic vesicles to synapses. Functions as an activator of Rac GTPase activity.

Mus musculus (taxid: 10090)

>sp|Q01631|CYAA_NEUCR Adenylate cyclase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cr-1 PE=3 SV=2

 Score = 47.8 bits (112), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 2/85 (2%)

Query: 93   VRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMA-VISDLKKLEILCLHGSSIYQL 151
            +++L+L++  L S+  SI  L NL  L L S     +   I +LKKL+ L +  + + +L
Sbjct: 1122 LKILNLSNAQLASIDESIDNLMNLERLILDSNYFVSLPNQIGNLKKLDHLSMANNHLGEL 1181

Query: 152  PVEVGQLTQLRSLDLRHCSNLQVIP 176
            P E+G LT+LR+LD+ H +N++ +P
Sbjct: 1182 PPEIGCLTELRTLDV-HGNNMRKLP 1205

Plays essential roles in regulation of cellular metabolism by catalyzing the synthesis of a second messenger, cAMP.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|B0W6M9|SUR8_CULQU Leucine-rich repeat protein soc-2 homolog OS=Culex quinquefasciatus GN=Sur-8 PE=3 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 88/181 (48%), Gaps = 28/181 (15%)

Query: 76  KNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISD- 134
           +NS  ++P +L +++  ++VLDL    L  +P  I     LHTL         + V+ D 
Sbjct: 202 ENSLTSLPDSL-QNLKALKVLDLRHNKLSEIPDVI---YKLHTLTTLYLRFNRIKVVGDN 257

Query: 135 ---LKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLP-------NL 184
              L  L +L L  + I++LP  +G L  L +LDL H ++L      KHLP       NL
Sbjct: 258 LKNLSSLTMLSLRENKIHELPAAIGHLRNLTTLDLSH-NHL------KHLPEAIGNCVNL 310

Query: 185 TSLELEVNDANTLPRGGLFLEKPERIDLDAN------VRLKDQDTVQLWGIEELSLAELL 238
           T+L+L+ ND   +P     L   +R+ L  N      V L++   +  + +E  S+++L 
Sbjct: 311 TALDLQHNDLLDIPETIGNLANLQRLGLRYNQLTAIPVSLRNCIHMDEFNVEGNSISQLP 370

Query: 239 D 239
           D
Sbjct: 371 D 371

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Culex quinquefasciatus (taxid: 7176)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
359488288	1340	PREDICTED: LOW QUALITY PROTEIN: probable	0.783	0.151	0.386	1e-31
255563252	1603	Disease resistance protein RPS5, putativ	0.992	0.160	0.326	1e-30
302143655	1224	unnamed protein product [Vitis vinifera]	0.783	0.165	0.394	3e-30
296087872	1152	unnamed protein product [Vitis vinifera]	0.992	0.223	0.332	8e-30
147865073	1694	hypothetical protein VITISV_021876 [Viti	0.783	0.119	0.360	8e-30
359488027	1520	PREDICTED: disease resistance protein At	0.992	0.169	0.329	1e-29
224111296	1315	cc-nbs-lrr resistance protein [Populus t	0.988	0.194	0.325	3e-29
224083434	1144	cc-nbs-lrr resistance protein [Populus t	0.779	0.176	0.345	8e-29
147844589	1849	hypothetical protein VITISV_039838 [Viti	0.722	0.101	0.430	5e-28
359487926	2087	PREDICTED: uncharacterized protein LOC10	0.818	0.101	0.342	7e-28

>gi|359488288|ref|XP_003633735.1| PREDICTED: LOW QUALITY PROTEIN: probable disease resistance protein At1g61310-like [Vitis vinifera]

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/259 (38%), Positives = 135/259 (52%), Gaps = 56/259 (21%)

Query: 1   LGLFQGIKNIKEARARVHTLVNKLKAFCMLLDDDEN-IF-MHDVACDVAISITSREQNMF 58
           L LFQG   ++EA+ R+ TLV+ LKA  +LL+   N +F MHDV  +VAI I S+E ++F
Sbjct: 427 LRLFQGTNTLEEAKNRIETLVDNLKASNLLLETRYNAVFRMHDVVQNVAIEIASKEHHVF 486

Query: 59  T-ATDELVSGWEWSDEGRK--------------------NSFFAIPQNLLRSMLQVRVLD 97
           T  T   +  W   DE +K                    NS   IP      M Q++VLD
Sbjct: 487 TFQTGVRMEEWPNMDELQKFTMIYLDCCDIRELPEGLNHNSSLKIPNTFFEGMKQLKVLD 546

Query: 98  LTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQ 157
            T+M+L SLPSS+  L NL TLCL +C L D+ +I++LKKLEIL L  S I QLP E+ Q
Sbjct: 547 FTNMHLPSLPSSLHCLANLRTLCLDACKLGDITIIAELKKLEILSLMDSDIEQLPRELSQ 606

Query: 158 LTQLRSLDLRHCSNLQVIPLN---------------------------------KHLPNL 184
           LT LR LDL+  S L+VIP +                                 KHL  L
Sbjct: 607 LTHLRLLDLKGSSKLKVIPPDVISSLSQLEDLCMENSYTQWEVEGKSNAYLAELKHLSYL 666

Query: 185 TSLELEVNDANTLPRGGLF 203
           T+L++++ DA   P+  +F
Sbjct: 667 TTLDIQIPDAKLFPKDVVF 685

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563252|ref|XP_002522629.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223538105|gb|EEF39716.1| Disease resistance protein RPS5, putative [Ricinus communis]

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 115/352 (32%), Positives = 163/352 (46%), Gaps = 95/352 (26%)

Query: 1   LGLFQGIKNIKEARARVHTLVNKLKAFCMLLDDD--ENIFMHDVACDVAISITSREQNMF 58
           LGLF+GI  + +AR RVH L++ LKA C+LLD D    + +HDV  DVAISI SR Q++F
Sbjct: 426 LGLFKGIDTLGDARNRVHKLISDLKAACLLLDSDIKGRVKIHDVVRDVAISIASRMQHLF 485

Query: 59  TATD-ELVSGWEWSDEGRKNSFFAIPQNLLRSMLQV------------------------ 93
           T  +  L+  W   D  +  +  ++P N +  + +V                        
Sbjct: 486 TVRNGALLKEWPNKDVCKSCTRISLPYNDIHGLPEVLECPELELFLLFTQDISLKVPDLC 545

Query: 94  -------RVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
                  RVL+ T M+  SLP S+G L NL TLCL  C L+D+A+I +L  L IL    S
Sbjct: 546 FELTKNLRVLNFTGMHFSSLPPSLGFLKNLFTLCLDWCALRDVAIIGELTGLTILSFKHS 605

Query: 147 SIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN---------------------------- 178
            I +LP E+ QLT+L+ LDL HC  L+VIP                              
Sbjct: 606 DIVELPREIRQLTKLKFLDLSHCLKLKVIPAKIISELTQLEELYMNNSFDLWDVQGINNQ 665

Query: 179 --------KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDL------------------ 212
                   + LP LT+LE+ V DA  LP+  LF  K ER  +                  
Sbjct: 666 RNASLAELECLPYLTTLEICVLDAKILPK-DLFFRKLERFRIFIGDVWSGTGDYGTSRTL 724

Query: 213 -----DANVRLKDQDTVQLWGIEELSLAELLDHIKNFVNKLVKVGSSQLKYL 259
                 +++ L+   ++ L   E+L LAE +  IK+ +  L   G +QLK+L
Sbjct: 725 KLKLNTSSIHLEHGLSILLEVTEDLYLAE-VKGIKSVLYDLDSQGFTQLKHL 775

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143655|emb|CBI22408.3| unnamed protein product [Vitis vinifera]

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/241 (39%), Positives = 126/241 (52%), Gaps = 38/241 (15%)

Query: 1   LGLFQGIKNIKEARARVHTLVNKLKAFCMLLDDDEN--IFMHDVACDVAISITSREQNMF 58
           L LFQG   ++EA+ R+ TLV  LK+  +LL+   N  + MHD+    A  I S + ++F
Sbjct: 365 LRLFQGTNTLEEAKNRIDTLVETLKSSNLLLETGHNAVVRMHDLVRSTARKIASDQHHVF 424

Query: 59  T--ATDELVSGWEWSDEGRK-NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTN 115
           T   T   V GW   DE +K  S   IP      M Q++VLDL+ M L SLP S+  LTN
Sbjct: 425 TLQNTTVRVEGWPRIDELQKVTSVMQIPNKFFEEMKQLKVLDLSRMQLPSLPLSLHCLTN 484

Query: 116 LHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVI 175
           L TLCL  C + D+ +I+ LKKLEIL L  S + QLP E+ QLT LR LDL   S L+VI
Sbjct: 485 LRTLCLNGCKVGDIVIIAKLKKLEILSLIDSDMEQLPREIAQLTHLRLLDLSGSSKLKVI 544

Query: 176 PLN---------------------------------KHLPNLTSLELEVNDANTLPRGGL 202
           P                                   KHL +LTSL++++ DA  LP+  +
Sbjct: 545 PSGVISSLSQLENLCMANSFTQWEGEGKSNACLAELKHLSHLTSLDIQIRDAKLLPKDIV 604

Query: 203 F 203
           F
Sbjct: 605 F 605

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087872|emb|CBI35155.3| unnamed protein product [Vitis vinifera]

 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 116/349 (33%), Positives = 161/349 (46%), Gaps = 92/349 (26%)

Query: 1   LGLFQGIKNIKEARARVHTLVNKLKAFCMLLDDDENIF--MHDVACDVAISITSREQNMF 58
           L LFQG   ++EA+ R+ TLV+ LKA  +LLD   N F  MHDV  DVAI+I S+   +F
Sbjct: 247 LRLFQGTNTLEEAKNRIDTLVDSLKASKLLLDTGHNSFVRMHDVVRDVAIAIVSKVHRVF 306

Query: 59  TATDELVSGWEWSDEGRKNS-------------------------FF-------AIPQNL 86
           +  ++ +  W   DE +  +                         F+        IP+  
Sbjct: 307 SLREDELVEWPKMDELQTCTKMSLAYNDICELPIELVCPELELFLFYHTIDYHLKIPETF 366

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
              M +++VLDL++M+  SLPSS+  LTNL TL L  C L D+++I +LKKLE     GS
Sbjct: 367 FEEMKKLKVLDLSNMHFTSLPSSLRCLTNLRTLSLNWCKLGDISIIVELKKLEFFSFMGS 426

Query: 147 SIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN---------------------------- 178
           +I +LP E+ QLT LR  DLR CS L+ IP N                            
Sbjct: 427 NIEKLPREIAQLTHLRLFDLRDCSKLREIPPNVISSLSKLENLCMENSFTLWEVEGKSNA 486

Query: 179 -----KHLPNLTSLELEVNDANTLPRGGLFLEKPERI----------------------- 210
                K+LP LT+L++++ DA  L    LF EK  R                        
Sbjct: 487 SIAEFKYLPYLTTLDIQIPDAELLLTDVLF-EKLIRYRIFIGDVWSWDKNCPTTKTLKLN 545

Query: 211 DLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFVNKLVKVGSSQLKYL 259
            LD ++RL D  ++ L G ++L L E L    N   KL + G  QLK L
Sbjct: 546 KLDTSLRLADGISLLLKGAKDLHLRE-LSGAANVFPKLDREGFLQLKCL 593

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865073|emb|CAN83232.1| hypothetical protein VITISV_021876 [Vitis vinifera]

 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 98/272 (36%), Positives = 132/272 (48%), Gaps = 69/272 (25%)

Query: 1   LGLFQGIKNIKEARARVHTLVNKLKAFCMLLDDDEN--IFMHDVACDVAISITSREQNMF 58
           L LFQG   ++EA+ R+ TLV+ LK+  +LL+   N  + MHDV   VA+ I+S++ ++F
Sbjct: 424 LRLFQGTNTLEEAKNRIDTLVDNLKSSNLLLETGHNAVVRMHDVVRSVALDISSKDHHVF 483

Query: 59  T--ATDELVSGWEWSDEGRK--------------------------------NSFFAIPQ 84
           T   T   V  W   DE +K                                NS   IP 
Sbjct: 484 TLQQTTGRVEKWPRIDELQKVIWVNQDECDIHELPEGLVCPKLKLFICCLKTNSAVKIPN 543

Query: 85  NLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLH 144
                M Q++VLD T M+L SLPSS+  L NL TL LY C L D+ +I++LKKLEIL L 
Sbjct: 544 TFFEGMKQLQVLDFTQMHLPSLPSSLQCLANLQTLLLYGCKLGDIGIITELKKLEILSLI 603

Query: 145 GSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN-------------------------- 178
            S I QLP E+ QLT LR LDL   S ++VIP                            
Sbjct: 604 DSDIEQLPREIAQLTHLRLLDLSDSSTIKVIPSGVISSLSQLEDLCMENSFTQWEGEGKS 663

Query: 179 -------KHLPNLTSLELEVNDANTLPRGGLF 203
                  KHL +LTSL++++ DA  LP+  +F
Sbjct: 664 NACLAELKHLSHLTSLDIQIPDAKLLPKDVVF 695

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488027|ref|XP_002269288.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 115/349 (32%), Positives = 159/349 (45%), Gaps = 92/349 (26%)

Query: 1   LGLFQGIKNIKEARARVHTLVNKLKAFCMLLDDDENIF--MHDVACDVAISITSREQNMF 58
           L LFQG   ++EA+ R+ TLV+ LKA  +LLD   N F  MHDV  DVAI+I S+   +F
Sbjct: 427 LRLFQGTNTLEEAKNRIDTLVDSLKASKLLLDTGHNSFVRMHDVVRDVAIAIVSKVHRVF 486

Query: 59  TATDELVSGWEWSDEGRK--------------------------------NSFFAIPQNL 86
           +  ++ +  W   DE +                                 +    IP+  
Sbjct: 487 SLREDELVEWPKMDELQTCTKMSLAYNDICELPIELVCPELELFLFYHTIDYHLKIPETF 546

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
              M +++VLDL++M+  SLPSS+  LTNL TL L  C L D+++I +LKKLE     GS
Sbjct: 547 FEEMKKLKVLDLSNMHFTSLPSSLRCLTNLRTLSLNWCKLGDISIIVELKKLEFFSFMGS 606

Query: 147 SIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN---------------------------- 178
           +I +LP E+ QLT LR  DLR CS L+ IP N                            
Sbjct: 607 NIEKLPREIAQLTHLRLFDLRDCSKLREIPPNVISSLSKLENLCMENSFTLWEVEGKSNA 666

Query: 179 -----KHLPNLTSLELEVNDANTLPRGGLFLEKPERI----------------------- 210
                K+LP LT+L++++ DA  L    LF EK  R                        
Sbjct: 667 SIAEFKYLPYLTTLDIQIPDAELLLTDVLF-EKLIRYRIFIGDVWSWDKNCPTTKTLKLN 725

Query: 211 DLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFVNKLVKVGSSQLKYL 259
            LD ++RL D  ++ L G ++L L E L    N   KL + G  QLK L
Sbjct: 726 KLDTSLRLADGISLLLKGAKDLHLRE-LSGAANVFPKLDREGFLQLKCL 773

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111296|ref|XP_002332952.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834264|gb|EEE72741.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 115/353 (32%), Positives = 172/353 (48%), Gaps = 97/353 (27%)

Query: 1   LGLFQGIKNIKEARARVHTLVNKLKAFCMLL--DDDENIFMHDVACDVAISITSREQNMF 58
           L LF+G   ++E R  + TLV++LKA C+LL  D D ++ MHDV    AIS+  R+ ++ 
Sbjct: 420 LDLFKGCSTLEETRNSLLTLVDELKASCLLLEGDKDGSVKMHDVVHSFAISVALRDHHVL 479

Query: 59  TATDELVSGWEWSD----------EGRK-------------NSFF--------AIPQNLL 87
           T  DE    W  +D            RK             NSF          IP +  
Sbjct: 480 TVADEF-KEWPANDVLQQYTAISLPFRKIPDLPAILECPNLNSFLLLNKDPSLQIPDSFF 538

Query: 88  RSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSS 147
           R M ++++LDLT++NL  LPSS+  L NL TLCL  C+L+D+++I +L KL++L L  S+
Sbjct: 539 REMKELKILDLTEVNLSPLPSSLQFLENLQTLCLDHCVLEDISIIGELNKLKVLSLMSSN 598

Query: 148 IYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN----------------------------- 178
           I +LP E+G++T+L+ LDL +C  L+VI  N                             
Sbjct: 599 IVRLPREIGKVTRLQLLDLSNCERLEVISPNALSSLTRLEDLYMGNSFVKWETEGSSSQR 658

Query: 179 --------KHLPNLTSLELEVNDANTLPRGGLF--LEKPERIDL-----------DANVR 217
                   KHL NL++L +++ DA+ +P+  LF   +  ER  +           DA  R
Sbjct: 659 NNACLSELKHLSNLSTLHMQITDADNMPK-DLFSSFQNLERFRIFIGDGWDWSVKDATSR 717

Query: 218 ---LKDQDTVQL-WGI-------EELSLAELLDHIKNFVNKLVKVGSSQLKYL 259
              LK    +QL  G+       EEL L E L+ +K+ +N L   G  QL++L
Sbjct: 718 TLKLKLNTVIQLEEGVNTLLKITEELHLQE-LNGVKSILNDLDGEGFPQLRHL 769

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083434|ref|XP_002307025.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222856474|gb|EEE94021.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 92/266 (34%), Positives = 133/266 (50%), Gaps = 64/266 (24%)

Query: 1   LGLFQGIKNIKEARARVHTLVNKLKAFCMLLDD--DENIFMHDVACDVAISITSREQNMF 58
           LGLF G   ++EA+ RVH+LV+KLKA  +LL++  D    MHD   DVAISI  R+ ++F
Sbjct: 430 LGLFSGFVTVEEAQDRVHSLVHKLKASGLLLENHSDWQFSMHDAVRDVAISIAFRDCHVF 489

Query: 59  TATDELVSGWEWSDEGRK-----------------------------NSFFAIPQNLLRS 89
              DE+   W   +  +K                             +    I  N+ R 
Sbjct: 490 VGGDEVEPKWSAKNMLKKYKEIWLSSNIELLREMEYPQLKFLHVRSEDPSLEISSNICRG 549

Query: 90  MLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIY 149
           M +++VL LT+++L+SLPS +  L NL TLCL+   L ++A I +LKKLEIL    S+I 
Sbjct: 550 MHKLKVLVLTNISLVSLPSPLHFLKNLRTLCLHQSSLGEIADIGELKKLEILSFAKSNIK 609

Query: 150 QLPVEVGQLTQLRSLDLRHCSNLQVIPLN------------------------------- 178
            LP ++GQLT+LR LDL  C  L VIP N                               
Sbjct: 610 HLPRQIGQLTKLRMLDLSDCFELDVIPPNIFSNLSMLEELCMGNSFHHWATEGEDNASLV 669

Query: 179 --KHLPNLTSLELEVNDANTLPRGGL 202
              HLP+LT++++ V D++ + +G L
Sbjct: 670 ELDHLPHLTNVDIHVLDSHVMSKGML 695

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147844589|emb|CAN80585.1| hypothetical protein VITISV_039838 [Vitis vinifera]

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 84/195 (43%), Positives = 115/195 (58%), Gaps = 8/195 (4%)

Query: 1   LGLFQGIKNIKEARARVHTLVNKLKAFCMLLDD--DENIFMHDVACDVAISITSREQNMF 58
           L LFQ I  ++EAR R+HTL++ LKA  +LL+   D  + MHD+   VA +I S++ + F
Sbjct: 393 LDLFQNINALEEARDRLHTLIDDLKASSLLLESNHDACVRMHDIVRQVARAIASKDPHRF 452

Query: 59  TATDEL-----VSGWEWSDEGRKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLL 113
               +L         ++    R N    +P      M  ++VLDL+ M+  +LPSS+  L
Sbjct: 453 VPPMKLPKCLVCPQLKFCLLRRNNPSLNVPNTFFEGMKGLKVLDLSRMHFTTLPSSLDSL 512

Query: 114 TNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQ 173
            NL TLCL  C L D+A+I  L KL+IL L GS+I QLP E+ QLT LR LDL HC  L+
Sbjct: 513 ANLQTLCLDRCRLVDIALIGKLTKLQILSLKGSTIQQLPNEMVQLTNLRLLDLNHCWRLE 572

Query: 174 VIPLNKHLPNLTSLE 188
           VIP N  L +L+ LE
Sbjct: 573 VIPRNI-LSSLSRLE 586

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487926|ref|XP_002270338.2| PREDICTED: uncharacterized protein LOC100248775 [Vitis vinifera]

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 131/280 (46%), Gaps = 68/280 (24%)

Query: 1   LGLFQGIKNIKEARARVHTLVNKLKAFCMLL--DDDENIFMHDVACDVAISITSREQNMF 58
           L  FQ I +++EA  R+HTL++ LKA  +LL  DDDE + MHD+  DVA  I S++ + F
Sbjct: 424 LDWFQNINSLEEAWDRLHTLIDNLKASSLLLESDDDECVRMHDIVRDVARGIASKDPHRF 483

Query: 59  TA-TDELVSGWEWSDEGRKNSFFA-------------------------------IPQNL 86
               D+ +  W  +DE +  +F +                               IP   
Sbjct: 484 VVREDDRLEEWSKTDESKSCTFISLNCRAAHELPKCLVCPQLKFCLLDSNNPSLNIPNTF 543

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
              M  ++VLDL+ M   +LPSS+  L NL TLCL  C L D+A+I  L KL++L L  S
Sbjct: 544 FEGMKGLKVLDLSYMCFTTLPSSLDSLANLQTLCLDGCTLVDIALIGKLTKLQVLSLRRS 603

Query: 147 SIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN---------------------------- 178
           +I QLP E+ QLT LR LDL +C  L+VIP N                            
Sbjct: 604 TIQQLPNEMVQLTNLRLLDLNYCWELEVIPRNILSSLSRLECLYMNRFTQWAIEGESNAC 663

Query: 179 ----KHLPNLT--SLELEVNDANTLPRGGLFLEKPERIDL 212
                HL  LT   L+L + D   LP+   FLEK  R  +
Sbjct: 664 LSELNHLSRLTILDLDLHIPDIKLLPKEYTFLEKLTRYSI 703

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
MGI|MGI:1927197	582	Shoc2 "soc-2 (suppressor of cl	0.679	0.302	0.312	6.5e-09
TAIR|locus:2088807	471	PIRL2 "AT3G26500" [Arabidopsis	0.579	0.318	0.322	2.4e-08
UNIPROTKB|E1BRU6	728	LRSAM1 "Uncharacterized protei	0.444	0.157	0.366	6.2e-08
ZFIN|ZDB-GENE-050208-523	561	shoc2 "soc-2 suppressor of cle	0.594	0.274	0.315	7.4e-08
TAIR|locus:2131689	919	AT4G27220 [Arabidopsis thalian	0.849	0.239	0.302	1.1e-07
UNIPROTKB|E2R260	582	SHOC2 "Uncharacterized protein	0.625	0.278	0.305	1.8e-07
TAIR|locus:2076043	1194	RPP1 "recognition of peronospo	0.718	0.155	0.283	2e-07
TAIR|locus:2010326	464	PIRL3 "AT1G12970" [Arabidopsis	0.532	0.297	0.314	2.1e-07
UNIPROTKB|A6QLV3	582	SHOC2 "Leucine-rich repeat pro	0.625	0.278	0.305	3e-07
UNIPROTKB|Q9UQ13	582	SHOC2 "Leucine-rich repeat pro	0.625	0.278	0.305	3e-07

MGI|MGI:1927197 Shoc2 "soc-2 (suppressor of clear) homolog (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 158 (60.7 bits), Expect = 6.5e-09, P = 6.5e-09
 Identities = 59/189 (31%), Positives = 100/189 (52%)

Query:    76 KNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCL-YSCILKDMAVISD 134
             +NS  ++P +L  ++ ++R+LDL    L  +PS +  L +L TL L ++ I      I +
Sbjct:   155 ENSLTSLPDSL-DNLKKLRMLDLRHNKLREIPSVVYRLDSLTTLYLRFNRITTVEKDIKN 213

Query:   135 LKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPN---LTSLELEV 191
             L KL +L +  + I QLP E+G+L  L +LD+ H + L+ +P  K + N   +T+L+L+ 
Sbjct:   214 LPKLSMLSIRENKIKQLPAEIGELCNLITLDVAH-NQLEHLP--KEIGNCTQITNLDLQH 270

Query:   192 NDANTLPRGGLFLEKPERIDLDANVRLK--DQDTVQLWGIEELSLAE--LLDHIKNFVNK 247
             ND   LP     L    R+ L  N RL    +   +   +EEL+L    +    ++ ++ 
Sbjct:   271 NDLLDLPDTIGNLSSLNRLGLRYN-RLSAIPRSLAKCSALEELNLENNNISTLPESLLSS 329

Query:   248 LVKVGSSQL 256
             LVK+ S  L
Sbjct:   330 LVKLNSLTL 338

GO:0000164 "protein phosphatase type 1 complex" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0019903 "protein phosphatase binding" evidence=ISO

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=ISO

TAIR|locus:2088807 PIRL2 "AT3G26500" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 52/161 (32%), Positives = 86/161 (53%)

Query:    77 NSFFAIPQNLL--RSMLQVRVLDLTDMNLLSLPSSIGL-LTNLHTLCLYSCILKDM-AVI 132
             N+  A+P+++   RS+++   LD +  NL SLP++IG  L NL  L +    L+     I
Sbjct:   239 NNLTALPESIAHCRSLVE---LDASYNNLTSLPTNIGYGLQNLERLSIQLNKLRYFPGSI 295

Query:   133 SDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLR-HCSNLQVIPLN-KHLPNLTSLELE 190
             S++  L+ L  H + I+ +P  +G+LT+L  L+L  + +NL  +P     L NL  L+L 
Sbjct:   296 SEMYNLKYLDAHMNEIHGIPNSIGRLTKLEVLNLSSNFNNLMGVPDTITDLTNLRELDLS 355

Query:   191 VNDANTLPRGGLFLEKPERIDLDAN-VRLKDQDTVQLWGIE 230
              N    +P     L K E+++LD N + +  Q+ V   G E
Sbjct:   356 NNQIQAIPDSFYRLRKLEKLNLDQNPLEIPSQE-VATQGAE 395

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BRU6 LRSAM1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 151 (58.2 bits), Expect = 6.2e-08, P = 6.2e-08
 Identities = 44/120 (36%), Positives = 71/120 (59%)

Query:    82 IPQNL-LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAV-ISDLKKLE 139
             +P++  L S++ V+VLDL D  L SLP+ IG LT+L  L L   +LK +   I DL +L+
Sbjct:    71 VPKSCSLLSLITVKVLDLHDNQLASLPADIGQLTSLQVLNLERNLLKCLPQSIGDLAQLQ 130

Query:   140 ILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIP-LNKHLPNLTSLELEVNDANTLP 198
             +L + G+ + +LP  V  L  LR+L++   + LQ +P +  H+  L +L L+ +   T P
Sbjct:   131 VLNVKGNKLRELPATVSGLRSLRTLNVSE-NLLQELPRVLAHVRMLETLTLDASSM-TYP 188

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IEA

GO:0044425 "membrane part" evidence=IEA

GO:0045806 "negative regulation of endocytosis" evidence=IEA

GO:0046755 "non-lytic virus budding" evidence=IEA

GO:0051865 "protein autoubiquitination" evidence=IEA

GO:0070086 "ubiquitin-dependent endocytosis" evidence=IEA

ZFIN|ZDB-GENE-050208-523 shoc2 "soc-2 suppressor of clear homolog (C. elegans)" [Danio rerio (taxid:7955)]

 Score = 149 (57.5 bits), Expect = 7.4e-08, P = 7.4e-08
 Identities = 52/165 (31%), Positives = 90/165 (54%)

Query:    76 KNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCL-YSCILKDMAVISD 134
             +NS  ++P +L  ++ ++R+LDL    L  +P+ +  +++L TL L ++ I      I +
Sbjct:   134 ENSLTSLPDSL-DNLKKLRMLDLRHNKLREIPAVVYRVSSLTTLYLRFNRITTVEKDIKN 192

Query:   135 LKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPN---LTSLELEV 191
             L KL +L +  + I QLP E+G+L  L +LD+ H + L+ +P  K + N   +T+L+L+ 
Sbjct:   193 LSKLTMLSIRENKIKQLPAEIGELCNLITLDVAH-NQLEHLP--KEIGNCTQITNLDLQH 249

Query:   192 NDANTLPRGGLFLEKPERIDLDANVRLK--DQDTVQLWGIEELSL 234
             ND   LP     L    R+ L  N RL    +   +   +EEL+L
Sbjct:   250 NDLLDLPETIGNLASINRLGLRYN-RLSAIPRSLAKCRELEELNL 293

GO:0000164 "protein phosphatase type 1 complex" evidence=IEA;ISS

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0019903 "protein phosphatase binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 74/245 (30%), Positives = 108/245 (44%)

Query:     2 GLFQGIKNIKEARARVHTLVNKLKAFCMLLDDD--ENIFMHDVACDVAISITSREQNMFT 59
             GL  G  + ++      TLV +LK  C+L D D  + + MHDV  D AI   S +   F 
Sbjct:   392 GLLDGQHHYEDMMNEGVTLVERLKDSCLLEDGDSCDTVKMHDVVRDFAIWFMSSQGEGFH 451

Query:    60 ATDELVSGWEWSDEGRKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTL 119
             +   LV        GR       PQ+   S +Q RV  L    L  LP+++  +  + TL
Sbjct:   452 S---LVMA------GR--GLIEFPQDKFVSSVQ-RV-SLMANKLERLPNNV--IEGVETL 496

Query:   120 CLY---SCILKDM--AVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQV 174
              L    +  +K++    +     L IL L G  I  LP     L  LRSL LR+C  L+ 
Sbjct:   497 VLLLQGNSHVKEVPNGFLQAFPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLRNCKKLRN 556

Query:   175 IPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSL 234
             +P  + L  L  L+L  +    LPRG   L     I +    +L+   ++    I +LS 
Sbjct:   557 LPSLESLVKLQFLDLHESAIRELPRGLEALSSLRYICVSNTYQLQ---SIPAGTILQLSS 613

Query:   235 AELLD 239
              E+LD
Sbjct:   614 LEVLD 618

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|E2R260 SHOC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 146 (56.5 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 51/167 (30%), Positives = 85/167 (50%)

Query:    96 LDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDM-AVISDLKKLEILCLHGSSIYQLPVE 154
             LDL+  ++  LPSSI  LT L  L LYS  L+ + A +  L  L  L L+ +S+  LP  
Sbjct:   105 LDLSKRSIHILPSSIKELTQLTELYLYSNKLQSLPAEVGCLVNLMTLALNENSLTSLPDS 164

Query:   155 VGQLTQLRSLDLRHCSNLQVIP-LNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLD 213
             +  L +LR LDLRH + L+ IP +   L +LT+L L  N   T+ +    L K   + + 
Sbjct:   165 LDNLKKLRMLDLRH-NKLREIPSVVYRLDSLTTLYLRFNRITTVEKDIKNLSKLSMLSIR 223

Query:   214 AN-VRLKDQDTVQLWGIEELSLAE-LLDHIKNFVNKLVKVGSSQLKY 258
              N ++    +  +L  +  L +A   L+H+   +    ++ +  L++
Sbjct:   224 ENKIKQLPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQH 270

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000164 "protein phosphatase type 1 complex" evidence=IEA

TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 59/208 (28%), Positives = 104/208 (50%)

Query:    51 TSREQNMFTATDELVSGWEWSDEGRKNSFFAIPQNLLRSMLQVRVLDLTDMN-LLSLPSS 109
             +S  + ++  T +L    +W D    +    +P   L +   +  L L + + L+ LPSS
Sbjct:   700 SSNLRKLWEGTKQL-RNLKWMDLSYSSYLKELPN--LSTATNLEELKLRNCSSLVELPSS 756

Query:   110 IGLLTNLHTLCLYSCI-LKDMAVISDLKKLEILCLHG-SSIYQLPVEVGQLTQLRSLDLR 167
             I  LT+L  L L +C  L+ +  I +  KL  L L   SS+ +LP+ +G  T L+ L++ 
Sbjct:   757 IEKLTSLQILDLENCSSLEKLPAIENATKLRELKLQNCSSLIELPLSIGTATNLKQLNIS 816

Query:   168 HCSNLQVIPLNKHLPNLTSLEL-EVNDAN---TLPRG-G-------LFLEKPERID-LDA 214
              CS+L  +P +  + ++T LE+ ++++ +   TLP   G       L +    +++ L  
Sbjct:   817 GCSSLVKLPSS--IGDITDLEVFDLSNCSSLVTLPSSIGNLQNLCKLIMRGCSKLEALPI 874

Query:   215 NVRLKDQDTVQLWGIEEL-SLAELLDHI 241
             N+ LK  DT+ L    +L S  E+  HI
Sbjct:   875 NINLKSLDTLNLTDCSQLKSFPEISTHI 902

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0002239 "response to oomycetes" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP;TAS

GO:0030275 "LRR domain binding" evidence=ISS

TAIR|locus:2010326 PIRL3 "AT1G12970" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 45/143 (31%), Positives = 73/143 (51%)

Query:    77 NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGL-LTNLHTLCLYSCILKDMA-VISD 134
             N    +P+++ +    V  LD +  NL SLP++ G  L NL  L +    ++     I +
Sbjct:   240 NKLTLLPESIAQCRSLVE-LDASFNNLTSLPANFGYGLLNLERLSIQLNKIRFFPNSICE 298

Query:   135 LKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLR-HCSNLQVIPLN-KHLPNLTSLELEVN 192
             ++ L  L  H + I+ LP+ +G+LT L  ++L  + S+L  +P     L NL  L+L  N
Sbjct:   299 MRSLRYLDAHMNEIHGLPIAIGRLTNLEVMNLSSNFSDLIELPDTISDLANLRELDLSNN 358

Query:   193 DANTLPRGGLFLEKPERIDLDAN 215
                 LP     LEK E+++LD N
Sbjct:   359 QIRVLPDSFFRLEKLEKLNLDQN 381

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

UNIPROTKB|A6QLV3 SHOC2 "Leucine-rich repeat protein SHOC-2" [Bos taurus (taxid:9913)]

 Score = 144 (55.7 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 51/167 (30%), Positives = 84/167 (50%)

Query:    96 LDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDM-AVISDLKKLEILCLHGSSIYQLPVE 154
             LDL+  ++  LPSSI  LT L  L LYS  L+ + A +  L  L  L L  +S+  LP  
Sbjct:   105 LDLSKRSIHILPSSIKELTQLTELYLYSNKLQSLPAEVGCLVNLMTLALSENSLTSLPDS 164

Query:   155 VGQLTQLRSLDLRHCSNLQVIP-LNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLD 213
             +  L +LR LDLRH + L+ IP +   L +LT+L L  N   T+ +    L K   + + 
Sbjct:   165 LDNLKKLRMLDLRH-NKLREIPSVVYRLDSLTTLYLRFNRITTVEKDIKNLSKLSMLSIR 223

Query:   214 AN-VRLKDQDTVQLWGIEELSLAE-LLDHIKNFVNKLVKVGSSQLKY 258
              N ++    +  +L  +  L +A   L+H+   +    ++ +  L++
Sbjct:   224 ENKIKQLPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQH 270

GO:0019903 "protein phosphatase binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0000164 "protein phosphatase type 1 complex" evidence=ISS

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=ISS

UNIPROTKB|Q9UQ13 SHOC2 "Leucine-rich repeat protein SHOC-2" [Homo sapiens (taxid:9606)]

 Score = 144 (55.7 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 51/167 (30%), Positives = 84/167 (50%)

Query:    96 LDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDM-AVISDLKKLEILCLHGSSIYQLPVE 154
             LDL+  ++  LPSSI  LT L  L LYS  L+ + A +  L  L  L L  +S+  LP  
Sbjct:   105 LDLSKRSIHILPSSIKELTQLTELYLYSNKLQSLPAEVGCLVNLMTLALSENSLTSLPDS 164

Query:   155 VGQLTQLRSLDLRHCSNLQVIP-LNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLD 213
             +  L +LR LDLRH + L+ IP +   L +LT+L L  N   T+ +    L K   + + 
Sbjct:   165 LDNLKKLRMLDLRH-NKLREIPSVVYRLDSLTTLYLRFNRITTVEKDIKNLSKLSMLSIR 223

Query:   214 AN-VRLKDQDTVQLWGIEELSLAE-LLDHIKNFVNKLVKVGSSQLKY 258
              N ++    +  +L  +  L +A   L+H+   +    ++ +  L++
Sbjct:   224 ENKIKQLPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQH 270

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=NAS

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0007265 "Ras protein signal transduction" evidence=NAS

GO:0019888 "protein phosphatase regulator activity" evidence=TAS

GO:0019903 "protein phosphatase binding" evidence=IDA

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0000164 "protein phosphatase type 1 complex" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	259
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.004

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.3 bits (94), Expect = 7e-04
 Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 96  LDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDL--KKLEILCLHGSSIYQLPV 153
           LDL    L S  S +  LTNL +L L +  + D+  +  L    L+ L L  + I  LP 
Sbjct: 98  LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPS 157

Query: 154 EVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLD 213
            +  L  L++LDL       +  L  +L NL +L+L  N  + LP     L   E +DL 
Sbjct: 158 PLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLS 217

Query: 214 AN 215
            N
Sbjct: 218 NN 219

Length = 394

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 22/88 (25%)

Query: 102 NLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQL 161
           NL  +P  + + TNL TL L  C                     SS+ +LP  +  L +L
Sbjct: 646 NLKEIPD-LSMATNLETLKLSDC---------------------SSLVELPSSIQYLNKL 683

Query: 162 RSLDLRHCSNLQVIPLNKHLPNLTSLEL 189
             LD+  C NL+++P   +L +L  L L
Sbjct: 684 EDLDMSRCENLEILPTGINLKSLYRLNL 711

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	259
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.85
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.77
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.73
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.71
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.59
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.59
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.55
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.51
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.48
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.45
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.35
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.31
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.31
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.25
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.23
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.22
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.22
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.21
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.18
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.16
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.13
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.07
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.07
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.04
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.03
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.0
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.0
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.99
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.98
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.96
PLN03150	623	hypothetical protein; Provisional	98.93
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.76
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.76
PLN03150	623	hypothetical protein; Provisional	98.74
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.65
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.64
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.54
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.49
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.39
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.36
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.35
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.35
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.33
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.32
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.25
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.19
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.12
PRK15386	426	type III secretion protein GogB; Provisional	98.11
PRK15386	426	type III secretion protein GogB; Provisional	98.11
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.09
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.03
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.02
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.84
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.82
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.78
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.71
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.48
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.46
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.27
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.16
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.12
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.9
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.82
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.37
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.25
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.84
KOG4341	483	consensus F-box protein containing LRR [General fu	95.73
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.46
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.15
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.53
smart00370	26	LRR Leucine-rich repeats, outliers.	94.53
KOG4341	483	consensus F-box protein containing LRR [General fu	94.19
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.0
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.82
smart00370	26	LRR Leucine-rich repeats, outliers.	93.82
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.36
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.14
KOG3864	221	consensus Uncharacterized conserved protein [Funct	88.53
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.15
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	84.34
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	81.92

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.89  E-value=4.5e-24  Score=197.88  Aligned_cols=232  Identities=24%  Similarity=0.322  Sum_probs=143.7

Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHhcCccccCC-----CcEEccHHHHHHHHHHhh-----cccceEEec---CCCccc
Q 039152            1 LGLFQGIKNIKEARARVHTLVNKLKAFCMLLDDD-----ENIFMHDVACDVAISITS-----REQNMFTAT---DELVSG   67 (259)
Q Consensus         1 eG~i~~~~~~e~~~~~~~~~i~~L~~~~l~~~~~-----~~~~mHdli~dl~~~~~~-----~e~~~~~~~---~~~~~~   67 (259)
                      ||||++.+..+.+++.|++||++|+.++|++..+     .+|+|||+|||||.++|+     +|+..+...   ...+..
T Consensus       440 EGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~  519 (889)
T KOG4658|consen  440 EGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQV  519 (889)
T ss_pred             ccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccc
Confidence            8999997777889999999999999999999875     599999999999999999     676333222   013344


Q ss_pred             cccCccC-------------------ccccc---------ccccHHHHhCCCCccEEEcCCC-CCCCCchhhcCCCCCcE
Q 039152           68 WEWSDEG-------------------RKNSF---------FAIPQNLLRSMLQVRVLDLTDM-NLLSLPSSIGLLTNLHT  118 (259)
Q Consensus        68 ~~~~~~~-------------------~lr~l---------~~l~~~~~~~l~~L~~L~l~~~-~~~~lp~~i~~l~~L~~  118 (259)
                      ..|...+                   +++++         ..++.++|..++.|++||+++| .+.++|..|+.+.+|||
T Consensus       520 ~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  520 KSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY  599 (889)
T ss_pred             cchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence            5565544                   23333         3455666677777777777765 34467777777777777


Q ss_pred             EEecCCCCCC-chhhhCCCCCcEEEecCCCCc-ccchhhccCCcCCEEecCCCCCceeeCCC-------CCCCCCcEEEe
Q 039152          119 LCLYSCILKD-MAVISDLKKLEILCLHGSSIY-QLPVEVGQLTQLRSLDLRHCSNLQVIPLN-------KHLPNLTSLEL  189 (259)
Q Consensus       119 L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-------~~l~~L~~L~l  189 (259)
                      |+++++.+.. |.+++.+..|.+|++..+.-. .+|.....+++|++|.+....    ....       .++.+|+.+..
T Consensus       600 L~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~----~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  600 LDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA----LSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             ccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc----cccchhhHHhhhcccchhhhee
Confidence            7777777777 677777777777777766433 334444557777777765522    1111       34444444444


Q ss_pred             eccCCCccCCCCcCCCCCCeEEee----cccccCC-cccccccccceeecccc
Q 039152          190 EVNDANTLPRGGLFLEKPERIDLD----ANVRLKD-QDTVQLWGIEELSLAEL  237 (259)
Q Consensus       190 ~~~~~~~~p~~~~~l~~L~~L~l~----~~~~~~~-~~~~~l~~L~~L~l~~~  237 (259)
                      ..... .+-..+..++.|..+...    ++..... .....+++|+.|.+.+|
T Consensus       676 ~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~  727 (889)
T KOG4658|consen  676 TISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDC  727 (889)
T ss_pred             ecchh-HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcC
Confidence            32222 111111233333322221    2211111 22333999999999998

>PLN03210 Resistant to P

Probab=99.85  E-value=1.1e-20  Score=182.58  Aligned_cols=217  Identities=21%  Similarity=0.249  Sum_probs=129.6

Q ss_pred             HHHHHHhcCccccCCCcEEccHHHHHHHHHHhhcccc------eEEecCCCccc-cccCccCccccc---------cccc
Q 039152           20 LVNKLKAFCMLLDDDENIFMHDVACDVAISITSREQN------MFTATDELVSG-WEWSDEGRKNSF---------FAIP   83 (259)
Q Consensus        20 ~i~~L~~~~l~~~~~~~~~mHdli~dl~~~~~~~e~~------~~~~~~~~~~~-~~~~~~~~lr~l---------~~l~   83 (259)
                      .++.|+++|||+..+++++|||++||||+++++++..      +......+... ..-....+++.+         ..+.
T Consensus       471 ~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~  550 (1153)
T PLN03210        471 GLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIH  550 (1153)
T ss_pred             ChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeec
Confidence            4888999999999989999999999999999986631      11100000000 000011122211         2355


Q ss_pred             HHHHhCCCCccEEEcCCCCC------C-CCchhhcCCC-CCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchh
Q 039152           84 QNLLRSMLQVRVLDLTDMNL------L-SLPSSIGLLT-NLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVE  154 (259)
Q Consensus        84 ~~~~~~l~~L~~L~l~~~~~------~-~lp~~i~~l~-~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~  154 (259)
                      ...|.+|++|+.|.+..+..      . .+|..+..++ +|++|.+.++.+.. |..+ ...+|+.|++.++.+..+|.+
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~  629 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDG  629 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccc
Confidence            56677777777777754421      1 3455554443 46777776666666 4433 456666777766666666666


Q ss_pred             hccCCcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccC-CCccCCCCcCCCCCCeEEeecccccCC-ccccccccccee
Q 039152          155 VGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVND-ANTLPRGGLFLEKPERIDLDANVRLKD-QDTVQLWGIEEL  232 (259)
Q Consensus       155 i~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~-~~~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L  232 (259)
                      +..+++|+.|++++|+.+..+|....+++|+.|++++|. +..+|..++.+++|+.|++.+|..... |..+.+++|+.|
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L  709 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRL  709 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEE
Confidence            666666777777666666666655666666666666654 456666666666666666666643333 333345555555


Q ss_pred             ecccc
Q 039152          233 SLAEL  237 (259)
Q Consensus       233 ~l~~~  237 (259)
                      ++++|
T Consensus       710 ~Lsgc  714 (1153)
T PLN03210        710 NLSGC  714 (1153)
T ss_pred             eCCCC
Confidence            55555

syringae 6; Provisional

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.77  E-value=4.3e-21  Score=141.71  Aligned_cols=172  Identities=26%  Similarity=0.290  Sum_probs=144.7

Q ss_pred             cCcccccccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCccc
Q 039152           73 EGRKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQL  151 (259)
Q Consensus        73 ~~~lr~l~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l  151 (259)
                      .+.+.++..+|.- | ++++++.|-++.|.++.+|..|..+.+|++|++.+|++.+ |.+++++++|+.|++..|++..+
T Consensus        17 DrgiSsf~~~~gL-f-~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~l   94 (264)
T KOG0617|consen   17 DRGISSFEELPGL-F-NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNIL   94 (264)
T ss_pred             ccccccHhhcccc-c-chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcC
Confidence            4456667777764 3 7889999999999999999999999999999999999999 89999999999999999999999


Q ss_pred             chhhccCCcCCEEecCCCCCce-eeCCC-CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCccccc-ccc
Q 039152          152 PVEVGQLTQLRSLDLRHCSNLQ-VIPLN-KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQ-LWG  228 (259)
Q Consensus       152 p~~i~~l~~L~~L~l~~~~~~~-~lp~~-~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~-l~~  228 (259)
                      |.+++.++.|+.|++.+|+... .+|.. -.++.|+.|+++.|.+..+|..++.+++|+.|.++.|.-.+.|..++ +..
T Consensus        95 prgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~  174 (264)
T KOG0617|consen   95 PRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTR  174 (264)
T ss_pred             ccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHH
Confidence            9999999999999999866544 45543 55677888888999998899888999999999999887777777777 888


Q ss_pred             cceeeccccchhhhhhhhhh
Q 039152          229 IEELSLAELLDHIKNFVNKL  248 (259)
Q Consensus       229 L~~L~l~~~~~~~~~~~~~l  248 (259)
                      |++|.+.++  .+.-+|+++
T Consensus       175 lrelhiqgn--rl~vlppel  192 (264)
T KOG0617|consen  175 LRELHIQGN--RLTVLPPEL  192 (264)
T ss_pred             HHHHhcccc--eeeecChhh
Confidence            888898888  667777654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.73  E-value=1.6e-17  Score=159.21  Aligned_cols=157  Identities=25%  Similarity=0.345  Sum_probs=82.4

Q ss_pred             cccHHHHhCCCCccEEEcCCCCCC-----------------------CCchhhcCCCCCcEEEecCCCCCC--chhhhCC
Q 039152           81 AIPQNLLRSMLQVRVLDLTDMNLL-----------------------SLPSSIGLLTNLHTLCLYSCILKD--MAVISDL  135 (259)
Q Consensus        81 ~l~~~~~~~l~~L~~L~l~~~~~~-----------------------~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l  135 (259)
                      .+|.++|..+++|++|++++|.+.                       .+|..++.+++|++|++++|.+..  |..++.+
T Consensus       108 ~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l  187 (968)
T PLN00113        108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL  187 (968)
T ss_pred             cCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhC
Confidence            567666666666666666666543                       234445555555555555555443  4455555


Q ss_pred             CCCcEEEecCCCCc-ccchhhccCCcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCC-ccCCCCcCCCCCCeEEe
Q 039152          136 KKLEILCLHGSSIY-QLPVEVGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDAN-TLPRGGLFLEKPERIDL  212 (259)
Q Consensus       136 ~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~l  212 (259)
                      ++|++|++++|.+. .+|..++++++|++|++++|.....+|.. +++++|++|++++|.++ .+|..++.+++|+.|++
T Consensus       188 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  267 (968)
T PLN00113        188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL  267 (968)
T ss_pred             cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEEC
Confidence            55555555555544 44555555555555555554444444433 45555555555555553 45555555555555555


Q ss_pred             eccccc-CCccccc-ccccceeecccc
Q 039152          213 DANVRL-KDQDTVQ-LWGIEELSLAEL  237 (259)
Q Consensus       213 ~~~~~~-~~~~~~~-l~~L~~L~l~~~  237 (259)
                      .+|... ..+..+. +++|+.|++++|
T Consensus       268 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n  294 (968)
T PLN00113        268 YQNKLSGPIPPSIFSLQKLISLDLSDN  294 (968)
T ss_pred             cCCeeeccCchhHhhccCcCEEECcCC
Confidence            555221 2222222 555555555555

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.71  E-value=4.5e-17  Score=156.20  Aligned_cols=156  Identities=31%  Similarity=0.353  Sum_probs=117.0

Q ss_pred             cccHHHHhCCCCccEEEcCCCCCC-CCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCc-ccchhhc
Q 039152           81 AIPQNLLRSMLQVRVLDLTDMNLL-SLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIY-QLPVEVG  156 (259)
Q Consensus        81 ~l~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~-~lp~~i~  156 (259)
                      .+|.. ++++++|++|++++|.+. .+|..++++++|++|++++|.+..  |..++.+++|++|++++|.+. .+|..++
T Consensus       155 ~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  233 (968)
T PLN00113        155 EIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG  233 (968)
T ss_pred             cCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh
Confidence            45555 578899999999999876 678888899999999999998876  778888899999999888877 7788888


Q ss_pred             cCCcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCC-ccCCCCcCCCCCCeEEeeccccc-CCccccc-cccccee
Q 039152          157 QLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDAN-TLPRGGLFLEKPERIDLDANVRL-KDQDTVQ-LWGIEEL  232 (259)
Q Consensus       157 ~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~-~~~~~~~-l~~L~~L  232 (259)
                      ++++|++|++++|...+.+|.. +++++|++|++++|.+. .+|..+..+++|+.|++++|... ..+..+. +++|+.|
T Consensus       234 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  313 (968)
T PLN00113        234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEIL  313 (968)
T ss_pred             cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEE
Confidence            8888888888887665566655 67777777777777763 56666667777777777766332 2233222 6666666


Q ss_pred             ecccc
Q 039152          233 SLAEL  237 (259)
Q Consensus       233 ~l~~~  237 (259)
                      ++.+|
T Consensus       314 ~l~~n  318 (968)
T PLN00113        314 HLFSN  318 (968)
T ss_pred             ECCCC
Confidence            66666

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.66  E-value=5.9e-18  Score=147.10  Aligned_cols=173  Identities=21%  Similarity=0.307  Sum_probs=135.0

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccchhhcc
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPVEVGQ  157 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~i~~  157 (259)
                      ..||+++| .++.|++|+++.|++.++|..+..-+++-+|+|++|.|.. | +-+-+++-|-+|||++|+++.+|+.+..
T Consensus        93 sGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RR  171 (1255)
T KOG0444|consen   93 SGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRR  171 (1255)
T ss_pred             CCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHH
Confidence            57899998 7999999999999999999999999999999999999988 6 4466788999999999999999999999


Q ss_pred             CCcCCEEecCCCCC----ceeeCCC----------------------CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEE
Q 039152          158 LTQLRSLDLRHCSN----LQVIPLN----------------------KHLPNLTSLELEVNDANTLPRGGLFLEKPERID  211 (259)
Q Consensus       158 l~~L~~L~l~~~~~----~~~lp~~----------------------~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~  211 (259)
                      +..|++|.+++|..    +..+|..                      ..+.||..+|++.|.+..+|..+..+++|+.|+
T Consensus       172 L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLN  251 (1255)
T KOG0444|consen  172 LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLN  251 (1255)
T ss_pred             HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheec
Confidence            99999999988642    2233332                      456678888888888888888888888899998


Q ss_pred             eecccccCCccccc-ccccceeeccccchhhhhhhhhhhhccccccc
Q 039152          212 LDANVRLKDQDTVQ-LWGIEELSLAELLDHIKNFVNKLVKVGSSQLK  257 (259)
Q Consensus       212 l~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~  257 (259)
                      +++|...+...... ..+|+.|+++.+  .+..+|+.++  .++.|+
T Consensus       252 LS~N~iteL~~~~~~W~~lEtLNlSrN--QLt~LP~avc--KL~kL~  294 (1255)
T KOG0444|consen  252 LSGNKITELNMTEGEWENLETLNLSRN--QLTVLPDAVC--KLTKLT  294 (1255)
T ss_pred             cCcCceeeeeccHHHHhhhhhhccccc--hhccchHHHh--hhHHHH
Confidence            88876655544333 666777777776  5556665433  444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=1.8e-18  Score=127.93  Aligned_cols=143  Identities=25%  Similarity=0.320  Sum_probs=130.3

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCc--ccchhhc
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIY--QLPVEVG  156 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~--~lp~~i~  156 (259)
                      ..+|+.+ ..+++|.+|.+.+|+++++|.+++.++.|+.|++..|++.. |..++.++.|++||+..|++.  .+|..+.
T Consensus        46 ~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff  124 (264)
T KOG0617|consen   46 TVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFF  124 (264)
T ss_pred             eecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchh
Confidence            5677876 68999999999999999999999999999999999999988 999999999999999999876  7899999


Q ss_pred             cCCcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccc
Q 039152          157 QLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTV  224 (259)
Q Consensus       157 ~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~  224 (259)
                      -++.|+-|++++ +....+|.. +++++|+.|.+..|.+-++|..++.++.|++|++.+|.-.-.|+.+
T Consensus       125 ~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel  192 (264)
T KOG0617|consen  125 YMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPEL  192 (264)
T ss_pred             HHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChhh
Confidence            999999999999 677888887 9999999999999999999999999999999999998655554443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.59  E-value=3.4e-17  Score=142.47  Aligned_cols=157  Identities=25%  Similarity=0.303  Sum_probs=140.4

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccC
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQL  158 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l  158 (259)
                      ..+|..+ .++.+|+.++++.|.++.+|+.+-++.+|+.|+|++|.+++ -...+...+|++|+++.|++..+|..++++
T Consensus       212 ~N~Ptsl-d~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL  290 (1255)
T KOG0444|consen  212 DNIPTSL-DDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKL  290 (1255)
T ss_pred             hcCCCch-hhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhh
Confidence            5677775 68999999999999999999999999999999999999998 466777789999999999999999999999


Q ss_pred             CcCCEEecCCCCC-ceeeCCC-CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCccccc-ccccceeecc
Q 039152          159 TQLRSLDLRHCSN-LQVIPLN-KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQ-LWGIEELSLA  235 (259)
Q Consensus       159 ~~L~~L~l~~~~~-~~~lp~~-~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~-l~~L~~L~l~  235 (259)
                      ++|+.|.+.+|.. ...+|.+ +++.+|+.+...+|.+.-+|.+++.|.+|+.|.+..|.-...|..++ ++.|+.|++.
T Consensus       291 ~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlr  370 (1255)
T KOG0444|consen  291 TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLR  370 (1255)
T ss_pred             HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeecc
Confidence            9999999987543 2356666 99999999999999999999999999999999999998888888888 9999999999


Q ss_pred             cc
Q 039152          236 EL  237 (259)
Q Consensus       236 ~~  237 (259)
                      ++
T Consensus       371 eN  372 (1255)
T KOG0444|consen  371 EN  372 (1255)
T ss_pred             CC
Confidence            88

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.59  E-value=3.1e-16  Score=135.37  Aligned_cols=141  Identities=23%  Similarity=0.261  Sum_probs=76.6

Q ss_pred             CCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCccc-chhhccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEe
Q 039152          115 NLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQL-PVEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLEL  189 (259)
Q Consensus       115 ~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l  189 (259)
                      ++++|+|..|+++.  -..+.+++.|+.|+++.|.|..+ ++++.-.++|+.|+++. +.+.+++.+  ..+..|+.|++
T Consensus       270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnL  348 (873)
T KOG4194|consen  270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNL  348 (873)
T ss_pred             ccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccc-cccccCChhHHHHHHHhhhhcc
Confidence            33344444444333  23334444444444444444433 22333344444444444 334444443  33444444444


Q ss_pred             eccCCCccCCC-CcCCCCCCeEEeecc---cccCCcccc--cccccceeeccccchhhhhhhhhhhhcccccccCC
Q 039152          190 EVNDANTLPRG-GLFLEKPERIDLDAN---VRLKDQDTV--QLWGIEELSLAELLDHIKNFVNKLVKVGSSQLKYL  259 (259)
Q Consensus       190 ~~~~~~~~p~~-~~~l~~L~~L~l~~~---~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~L  259 (259)
                      +.|.+..+.++ +.++++|+.|+++.|   +..++....  ++++|+.|++.++  .++.|+... +.|++.|++|
T Consensus       349 s~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN--qlk~I~krA-fsgl~~LE~L  421 (873)
T KOG4194|consen  349 SHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN--QLKSIPKRA-FSGLEALEHL  421 (873)
T ss_pred             cccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc--eeeecchhh-hccCccccee
Confidence            44444444333 336778888888877   334442222  2888899999888  888888776 7888888876

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.55  E-value=1.2e-15  Score=131.81  Aligned_cols=175  Identities=23%  Similarity=0.258  Sum_probs=117.3

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-h
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE-V  155 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i  155 (259)
                      ..+-.+.|.++.+|.+|.++.|.++.+|. .|.++++|+.|+|..|.+..  ...+.++++|+.|.+..|.|..+.++ +
T Consensus       186 t~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~F  265 (873)
T KOG4194|consen  186 TTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAF  265 (873)
T ss_pred             cccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcce
Confidence            34555667777788888888888887776 35558888888888887665  45666777777777777777777665 6


Q ss_pred             ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecccccCCccccc--ccccc
Q 039152          156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRLKDQDTVQ--LWGIE  230 (259)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~~~~--l~~L~  230 (259)
                      ..+.++++|++.. +.++.+..+  .+++.|+.|++++|.+..+ ++.+...++|+.|+++.|.....++.-.  +..|+
T Consensus       266 y~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le  344 (873)
T KOG4194|consen  266 YGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLE  344 (873)
T ss_pred             eeecccceeeccc-chhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhh
Confidence            6777777777777 344444444  6777777777777777543 4444567777777777775554433222  77777


Q ss_pred             eeeccccchhhhhhhhhhhhcccccccC
Q 039152          231 ELSLAELLDHIKNFVNKLVKVGSSQLKY  258 (259)
Q Consensus       231 ~L~l~~~~~~~~~~~~~l~~~~l~~L~~  258 (259)
                      .|+|+++  .++.+-+.. +.++.+|+.
T Consensus       345 ~LnLs~N--si~~l~e~a-f~~lssL~~  369 (873)
T KOG4194|consen  345 ELNLSHN--SIDHLAEGA-FVGLSSLHK  369 (873)
T ss_pred             hhccccc--chHHHHhhH-HHHhhhhhh
Confidence            7777777  666665543 555555543

>PLN03210 Resistant to P

Probab=99.51  E-value=8.5e-14  Score=135.10  Aligned_cols=112  Identities=28%  Similarity=0.400  Sum_probs=85.8

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCC-CCCchhhhCCCCCcEEEecCC-CCcccchhhcc
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCI-LKDMAVISDLKKLEILCLHGS-SIYQLPVEVGQ  157 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~~-~i~~lp~~i~~  157 (259)
                      ..+|..+  .+++|+.|++.++.+..+|..+..+++|++|+++++. +...+.++.+++|++|++++| .+..+|..+++
T Consensus       602 ~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~  679 (1153)
T PLN03210        602 RCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQY  679 (1153)
T ss_pred             CCCCCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhc
Confidence            3455543  4678888888888888888888888899999998776 444566888889999999887 46688888889


Q ss_pred             CCcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccC
Q 039152          158 LTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVND  193 (259)
Q Consensus       158 l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~  193 (259)
                      +++|+.|++++|+.+..+|...++++|+.|++++|.
T Consensus       680 L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        680 LNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCS  715 (1153)
T ss_pred             cCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence            999999999988888888876556666666665553

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.48  E-value=2.6e-16  Score=130.32  Aligned_cols=165  Identities=27%  Similarity=0.342  Sum_probs=92.9

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccC
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQL  158 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l  158 (259)
                      .++|+++ .+...++.++.+.|.+..+|++++.+..|..++..+|.++. |++++.+.+|..+++.+|.+.++|+..-++
T Consensus       104 s~lp~~i-~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m  182 (565)
T KOG0472|consen  104 SELPEQI-GSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAM  182 (565)
T ss_pred             hhccHHH-hhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHH
Confidence            3455554 34555666666666666666666666666666666666555 555555555555555555555555554445


Q ss_pred             CcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCCccC----------------------CCCc-CCCCCCeEEeec
Q 039152          159 TQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDANTLP----------------------RGGL-FLEKPERIDLDA  214 (259)
Q Consensus       159 ~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~~p----------------------~~~~-~l~~L~~L~l~~  214 (259)
                      +.|++++... +.++.+|.. +.+.+|..|++..|.+..+|                      ..++ .++++..|+++.
T Consensus       183 ~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd  261 (565)
T KOG0472|consen  183 KRLKHLDCNS-NLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD  261 (565)
T ss_pred             HHHHhcccch-hhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc
Confidence            5555555555 455555555 55555555555555555555                      3333 455555666655


Q ss_pred             ccccCCccc-ccccccceeeccccchhhhhhhhhh
Q 039152          215 NVRLKDQDT-VQLWGIEELSLAELLDHIKNFVNKL  248 (259)
Q Consensus       215 ~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~l  248 (259)
                      |...+.|.. +.+++|++|+++++  .+..+|..+
T Consensus       262 Nklke~Pde~clLrsL~rLDlSNN--~is~Lp~sL  294 (565)
T KOG0472|consen  262 NKLKEVPDEICLLRSLERLDLSNN--DISSLPYSL  294 (565)
T ss_pred             cccccCchHHHHhhhhhhhcccCC--ccccCCccc
Confidence            544444333 23666666666666  566666544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.45  E-value=1.1e-15  Score=126.62  Aligned_cols=158  Identities=25%  Similarity=0.268  Sum_probs=102.5

Q ss_pred             hCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEec
Q 039152           88 RSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDL  166 (259)
Q Consensus        88 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l  166 (259)
                      .++..+++|.+..|++..+|++++.+..+..++.+.|.+.. |+.++.+.+|..++++.|.+.++|++++.+..+..++.
T Consensus        65 ~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~  144 (565)
T KOG0472|consen   65 KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDA  144 (565)
T ss_pred             hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhc
Confidence            45666666666666666666666666666666666666655 55666666666666666655555555555555555555


Q ss_pred             CCCCCceeeCCC------------------------CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcc
Q 039152          167 RHCSNLQVIPLN------------------------KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQD  222 (259)
Q Consensus       167 ~~~~~~~~lp~~------------------------~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~  222 (259)
                      .+ +.+.++|..                        .+++.|++++...|.++.+|..++.+.+|..|++..|.....|.
T Consensus       145 ~~-N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe  223 (565)
T KOG0472|consen  145 TN-NQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPE  223 (565)
T ss_pred             cc-cccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCC
Confidence            54 344444443                        45788999999999999999999999999999999886555554


Q ss_pred             cccccccceeeccccchhhhhhhhhh
Q 039152          223 TVQLWGIEELSLAELLDHIKNFVNKL  248 (259)
Q Consensus       223 ~~~l~~L~~L~l~~~~~~~~~~~~~l  248 (259)
                      +-++..|.+|+++.+  .++.+|+++
T Consensus       224 f~gcs~L~Elh~g~N--~i~~lpae~  247 (565)
T KOG0472|consen  224 FPGCSLLKELHVGEN--QIEMLPAEH  247 (565)
T ss_pred             CCccHHHHHHHhccc--HHHhhHHHH
Confidence            333555555555555  444444443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.35  E-value=4.6e-14  Score=127.59  Aligned_cols=156  Identities=24%  Similarity=0.292  Sum_probs=92.3

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccc------
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLP------  152 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp------  152 (259)
                      ..+| .|...+.+|+.+....|.+..+|..+.....|++|.+..|.+.. |+...++++|++|++..|.+..+|      
T Consensus       254 ~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v  332 (1081)
T KOG0618|consen  254 SNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAV  332 (1081)
T ss_pred             hcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhh
Confidence            4556 44566777777777777666666666656666666666665555 555555666666666655555444      


Q ss_pred             --------------------------------------------hhhccCCcCCEEecCCCCCceeeCCC--CCCCCCcE
Q 039152          153 --------------------------------------------VEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTS  186 (259)
Q Consensus       153 --------------------------------------------~~i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~  186 (259)
                                                                  +.+.++.+|+.|++++ +.++.+|..  .++..|+.
T Consensus       333 ~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~~kle~Lee  411 (1081)
T KOG0618|consen  333 LNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPASKLRKLEELEE  411 (1081)
T ss_pred             hhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-cccccCCHHHHhchHHhHH
Confidence                                                        2334555666666665 455555555  55556666


Q ss_pred             EEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeecccc
Q 039152          187 LELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAEL  237 (259)
Q Consensus       187 L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~  237 (259)
                      |++++|.++.+|..+..++.|++|...+|.....|....++.|+.+|++.+
T Consensus       412 L~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N  462 (1081)
T KOG0618|consen  412 LNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCN  462 (1081)
T ss_pred             HhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccc
Confidence            666666666666555555555555555554444454444666666666666

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.31  E-value=1.2e-12  Score=99.80  Aligned_cols=123  Identities=21%  Similarity=0.261  Sum_probs=42.3

Q ss_pred             CCCCccEEEcCCCCCCCCchhhc-CCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhc-cCCcCCEEec
Q 039152           89 SMLQVRVLDLTDMNLLSLPSSIG-LLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVG-QLTQLRSLDL  166 (259)
Q Consensus        89 ~l~~L~~L~l~~~~~~~lp~~i~-~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~-~l~~L~~L~l  166 (259)
                      +...++.|++.+|.++.+.. ++ .+.+|+.|++++|.++..+.+..+++|++|++++|+|+.+++.+. .+++|++|++
T Consensus        17 n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             -------------------S---TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred             cccccccccccccccccccc-hhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence            44567888888888876643 44 467888888888888876677778888888888888887766553 5778888888


Q ss_pred             CCCCCceeeCCC---CCCCCCcEEEeeccCCCccCCC----CcCCCCCCeEEee
Q 039152          167 RHCSNLQVIPLN---KHLPNLTSLELEVNDANTLPRG----GLFLEKPERIDLD  213 (259)
Q Consensus       167 ~~~~~~~~lp~~---~~l~~L~~L~l~~~~~~~~p~~----~~~l~~L~~L~l~  213 (259)
                      ++ +.+..+...   ..+++|+.|++.+|+++.-+..    +..+++|+.|+-.
T Consensus        96 ~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   96 SN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             cC-CcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            77 344433332   5566666666666666543331    3355555555544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.31  E-value=8.9e-12  Score=114.88  Aligned_cols=152  Identities=20%  Similarity=0.282  Sum_probs=82.3

Q ss_pred             cccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCC
Q 039152           81 AIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLT  159 (259)
Q Consensus        81 ~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~  159 (259)
                      .+|..++   ++|+.|++++|.++.+|..+.  .+|+.|++++|.+.. |..+.  .+|++|++++|++..+|..+.  .
T Consensus       213 sLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~  283 (754)
T PRK15370        213 SLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--E  283 (754)
T ss_pred             cCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--C
Confidence            4555443   356666666666666665443  356666666666555 43332  356666666666666655443  3


Q ss_pred             cCCEEecCCCCCceeeCCC--------------------CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccC
Q 039152          160 QLRSLDLRHCSNLQVIPLN--------------------KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLK  219 (259)
Q Consensus       160 ~L~~L~l~~~~~~~~lp~~--------------------~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~  219 (259)
                      +|+.|++++| .+..+|..                    .-.++|+.|++++|.++.+|..+.  ++|+.|++++|....
T Consensus       284 sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~  360 (754)
T PRK15370        284 ELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITV  360 (754)
T ss_pred             CCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhhc--CcccEEECCCCCCCc
Confidence            5666666653 33333321                    122456666666666666665432  567777777663333


Q ss_pred             Ccccccccccceeeccccchhhhhhhhh
Q 039152          220 DQDTVQLWGIEELSLAELLDHIKNFVNK  247 (259)
Q Consensus       220 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~  247 (259)
                      .|..+ .++|+.|++++|  .+..+|..
T Consensus       361 LP~~l-p~~L~~LdLs~N--~Lt~LP~~  385 (754)
T PRK15370        361 LPETL-PPTITTLDVSRN--ALTNLPEN  385 (754)
T ss_pred             CChhh-cCCcCEEECCCC--cCCCCCHh
Confidence            22222 356677777766  55555543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.25  E-value=1.7e-11  Score=113.07  Aligned_cols=154  Identities=23%  Similarity=0.251  Sum_probs=105.9

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccC
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQL  158 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l  158 (259)
                      ..+|..+   .+.++.|++++|.++.+|..+.  .+|++|++++|.++. |..+.  .+|+.|++++|.+..+|..+.  
T Consensus       191 tsLP~~I---p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--  261 (754)
T PRK15370        191 TTIPACI---PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--  261 (754)
T ss_pred             CcCCccc---ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--
Confidence            4556544   3578999999999998888664  589999999999888 55443  479999999999999988765  


Q ss_pred             CcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcC-------------------CCCCCeEEeecccccC
Q 039152          159 TQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLF-------------------LEKPERIDLDANVRLK  219 (259)
Q Consensus       159 ~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~-------------------l~~L~~L~l~~~~~~~  219 (259)
                      .+|+.|++++ +.+..+|.. -.++|+.|++++|.++.+|..+..                   .++|+.|++.+|....
T Consensus       262 s~L~~L~Ls~-N~L~~LP~~-l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~  339 (754)
T PRK15370        262 SALQSLDLFH-NKISCLPEN-LPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS  339 (754)
T ss_pred             CCCCEEECcC-CccCccccc-cCCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc
Confidence            4799999997 456677763 335899999999988877764321                   1234444444442222


Q ss_pred             Ccccccccccceeeccccchhhhhhhhh
Q 039152          220 DQDTVQLWGIEELSLAELLDHIKNFVNK  247 (259)
Q Consensus       220 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~  247 (259)
                      .+..+ .++|+.|++++|  .+..+|..
T Consensus       340 LP~~l-~~sL~~L~Ls~N--~L~~LP~~  364 (754)
T PRK15370        340 LPASL-PPELQVLDVSKN--QITVLPET  364 (754)
T ss_pred             CChhh-cCcccEEECCCC--CCCcCChh
Confidence            22111 356777777777  45555543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.23  E-value=2e-13  Score=117.78  Aligned_cols=154  Identities=24%  Similarity=0.294  Sum_probs=102.9

Q ss_pred             cccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCC
Q 039152           81 AIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLT  159 (259)
Q Consensus        81 ~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~  159 (259)
                      .+|..+ .++..|++++++.|.++.+|..++.|+ |++|.+++|+++. |..++.+.+|..||.+.|.+..+|..++.+.
T Consensus       112 ~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~  189 (722)
T KOG0532|consen  112 TIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLT  189 (722)
T ss_pred             ecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHH
Confidence            455554 467777777777777777777666553 7777777777777 6777766777777777777777777777777


Q ss_pred             cCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCccccc----ccccceeecc
Q 039152          160 QLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQ----LWGIEELSLA  235 (259)
Q Consensus       160 ~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~----l~~L~~L~l~  235 (259)
                      +|+.|++.. +.+..+|..-..-.|..||+++|++..+|..+..|+.|++|.+.+|.-...|..+-    ..=.++|+.+
T Consensus       190 slr~l~vrR-n~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~q  268 (722)
T KOG0532|consen  190 SLRDLNVRR-NHLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQ  268 (722)
T ss_pred             HHHHHHHhh-hhhhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecch
Confidence            777777777 44555665422334677777777777777777777777777777776555554443    2223445554


Q ss_pred             cc
Q 039152          236 EL  237 (259)
Q Consensus       236 ~~  237 (259)
                      -|
T Consensus       269 A~  270 (722)
T KOG0532|consen  269 AC  270 (722)
T ss_pred             hc
Confidence            44

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.22  E-value=5.6e-12  Score=96.07  Aligned_cols=135  Identities=24%  Similarity=0.292  Sum_probs=51.4

Q ss_pred             CCCCCCCchhhcCCCCCcEEEecCCCCCCchhhh-CCCCCcEEEecCCCCcccchhhccCCcCCEEecCCCCCceeeCCC
Q 039152          100 DMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVIS-DLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN  178 (259)
Q Consensus       100 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~  178 (259)
                      .+.+...|. +.+..+++.|++.+|.++....++ .+.+|+.|++++|.|+.++ ++..++.|++|++++ +.+..++..
T Consensus         6 ~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~   82 (175)
T PF14580_consen    6 ANMIEQIAQ-YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEG   82 (175)
T ss_dssp             -------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CHH
T ss_pred             ccccccccc-cccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccc
Confidence            334445554 456668899999999999877777 5889999999999999885 688899999999998 556666532


Q ss_pred             --CCCCCCcEEEeeccCCCccCC--CCcCCCCCCeEEeecccccCCcc----ccc-ccccceeecccc
Q 039152          179 --KHLPNLTSLELEVNDANTLPR--GGLFLEKPERIDLDANVRLKDQD----TVQ-LWGIEELSLAEL  237 (259)
Q Consensus       179 --~~l~~L~~L~l~~~~~~~~p~--~~~~l~~L~~L~l~~~~~~~~~~----~~~-l~~L~~L~l~~~  237 (259)
                        ..+++|+.|++++|.+..+-.  .+..+++|+.|++.+|.....+.    .+. +++|+.||-...
T Consensus        83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence              368999999999999865533  34589999999999996665532    222 999999987655

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.22  E-value=6.5e-13  Score=110.11  Aligned_cols=89  Identities=26%  Similarity=0.391  Sum_probs=65.8

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCC-chhhcCCCCCcEEEecC-CCCCC-c-hhhhCCCCCcEEEecCCCCcccch-h
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYS-CILKD-M-AVISDLKKLEILCLHGSSIYQLPV-E  154 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~-~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~-~  154 (259)
                      ..||++.|+.+++||.|+++.|.|+.+ |+.|.++..|..|-+.+ |.|++ | ..++++..|+-|.+.-|++..++. .
T Consensus        80 ~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~a  159 (498)
T KOG4237|consen   80 SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDA  159 (498)
T ss_pred             ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHH
Confidence            678999999999999999999999864 77888888877766655 78887 4 557777777777776666664433 3


Q ss_pred             hccCCcCCEEecCC
Q 039152          155 VGQLTQLRSLDLRH  168 (259)
Q Consensus       155 i~~l~~L~~L~l~~  168 (259)
                      +..++++..|.+.+
T Consensus       160 l~dL~~l~lLslyD  173 (498)
T KOG4237|consen  160 LRDLPSLSLLSLYD  173 (498)
T ss_pred             HHHhhhcchhcccc
Confidence            55666665555555

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.21  E-value=4.4e-13  Score=121.37  Aligned_cols=163  Identities=25%  Similarity=0.274  Sum_probs=127.6

Q ss_pred             CCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecC
Q 039152           89 SMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLR  167 (259)
Q Consensus        89 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~  167 (259)
                      -..++.+++++.+.+..+|++++.+.+|..++...|.+.. |..+...++|++|.+..|.++.+|+....++.|++|++.
T Consensus       239 ~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~  318 (1081)
T KOG0618|consen  239 VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQ  318 (1081)
T ss_pred             ccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeeh
Confidence            4568899999999999999999999999999999999987 888999999999999999999999988889999999999


Q ss_pred             CCCCceeeCCC---------------------------CCCCCCcEEEeeccCCC--ccCCCCcCCCCCCeEEeeccccc
Q 039152          168 HCSNLQVIPLN---------------------------KHLPNLTSLELEVNDAN--TLPRGGLFLEKPERIDLDANVRL  218 (259)
Q Consensus       168 ~~~~~~~lp~~---------------------------~~l~~L~~L~l~~~~~~--~~p~~~~~l~~L~~L~l~~~~~~  218 (259)
                      . +.+..+|..                           ..++.|+.|.+.+|.++  .+|. +.++..|+.|++++|...
T Consensus       319 ~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL~  396 (1081)
T KOG0618|consen  319 S-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRLN  396 (1081)
T ss_pred             h-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh-hccccceeeeeecccccc
Confidence            8 556667664                           33455666777777774  4443 367788888888888555


Q ss_pred             CCccccc--ccccceeeccccchhhhhhhhhhhhccccccc
Q 039152          219 KDQDTVQ--LWGIEELSLAELLDHIKNFVNKLVKVGSSQLK  257 (259)
Q Consensus       219 ~~~~~~~--l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~  257 (259)
                      ..|....  +..||.|+|+++  .++.+|..+.  .+++|+
T Consensus       397 ~fpas~~~kle~LeeL~LSGN--kL~~Lp~tva--~~~~L~  433 (1081)
T KOG0618|consen  397 SFPASKLRKLEELEELNLSGN--KLTTLPDTVA--NLGRLH  433 (1081)
T ss_pred             cCCHHHHhchHHhHHHhcccc--hhhhhhHHHH--hhhhhH
Confidence            5544333  888888888888  7778876543  444444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.18  E-value=7.9e-11  Score=108.44  Aligned_cols=59  Identities=15%  Similarity=0.088  Sum_probs=29.4

Q ss_pred             CCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeeccccchhhhhhhhh
Q 039152          182 PNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFVNK  247 (259)
Q Consensus       182 ~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  247 (259)
                      .+|+.|++++|.++.+|..   .++|+.|++++|.....|.  ...+|+.|++++|  .+..+|..
T Consensus       382 ~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~--l~~~L~~L~Ls~N--qLt~LP~s  440 (788)
T PRK15387        382 SGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPM--LPSGLLSLSVYRN--QLTRLPES  440 (788)
T ss_pred             cccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCc--chhhhhhhhhccC--cccccChH
Confidence            3455666666666555543   2455566666553322221  1234555555555  44555543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.16  E-value=4.3e-13  Score=115.80  Aligned_cols=168  Identities=23%  Similarity=0.297  Sum_probs=143.8

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccC
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQL  158 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l  158 (259)
                      ..+|..+ ..+-.|..+.+..|.+..+|..++.+..|.||+++.|+++. |..++.|+ |+.|-+++|++..+|+.++.+
T Consensus        88 ~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~  165 (722)
T KOG0532|consen   88 SELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLL  165 (722)
T ss_pred             ccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccc
Confidence            5666664 45667888888889898899999999999999999999998 88888777 899999999999999999988


Q ss_pred             CcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCccccc-ccccceeeccc
Q 039152          159 TQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQ-LWGIEELSLAE  236 (259)
Q Consensus       159 ~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~-l~~L~~L~l~~  236 (259)
                      ..|.+|+.+. +.+..+|.. +.+.+|+.|.+..|.+..+|..+..+ .|.+|++++|.....|..+. ++.|++|.|.+
T Consensus       166 ~tl~~ld~s~-nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~Len  243 (722)
T KOG0532|consen  166 PTLAHLDVSK-NEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLEN  243 (722)
T ss_pred             hhHHHhhhhh-hhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeecc
Confidence            9999999997 556677766 89999999999999999999997744 58899999998888777666 99999999999


Q ss_pred             cchhhhhhhhhhhhccc
Q 039152          237 LLDHIKNFVNKLVKVGS  253 (259)
Q Consensus       237 ~~~~~~~~~~~l~~~~l  253 (259)
                      |  .+++.|.+++..|.
T Consensus       244 N--PLqSPPAqIC~kGk  258 (722)
T KOG0532|consen  244 N--PLQSPPAQICEKGK  258 (722)
T ss_pred             C--CCCCChHHHHhccc
Confidence            9  99999998875553

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.13  E-value=2.2e-10  Score=105.55  Aligned_cols=105  Identities=26%  Similarity=0.314  Sum_probs=62.6

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccC
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQL  158 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l  158 (259)
                      ..+|+.+.   ++|+.|++.+|.++.+|..   +++|++|++++|.++. |..   .++|+.|++++|.+..+|...   
T Consensus       214 tsLP~~l~---~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp---  281 (788)
T PRK15387        214 TTLPDCLP---AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALP---  281 (788)
T ss_pred             CcCCcchh---cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhch---
Confidence            45666543   3677777777777777752   4677788888877776 321   246666666666666555422   


Q ss_pred             CcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCccCC
Q 039152          159 TQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPR  199 (259)
Q Consensus       159 ~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~  199 (259)
                      .+|+.|++++| .+..+|.  .+++|+.|++++|.++.+|.
T Consensus       282 ~~L~~L~Ls~N-~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~  319 (788)
T PRK15387        282 SGLCKLWIFGN-QLTSLPV--LPPGLQELSVSDNQLASLPA  319 (788)
T ss_pred             hhcCEEECcCC-ccccccc--cccccceeECCCCccccCCC
Confidence            34555666553 3444543  34556666666666655554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.07  E-value=7.5e-11  Score=110.47  Aligned_cols=131  Identities=27%  Similarity=0.275  Sum_probs=101.1

Q ss_pred             cccHHHHhCCCCccEEEcCCCC--CCCCch-hhcCCCCCcEEEecCCC-CCC-chhhhCCCCCcEEEecCCCCcccchhh
Q 039152           81 AIPQNLLRSMLQVRVLDLTDMN--LLSLPS-SIGLLTNLHTLCLYSCI-LKD-MAVISDLKKLEILCLHGSSIYQLPVEV  155 (259)
Q Consensus        81 ~l~~~~~~~l~~L~~L~l~~~~--~~~lp~-~i~~l~~L~~L~l~~~~-~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i  155 (259)
                      .++...  ..+.|++|-+.+|.  +..++. .|..++.|++||+++|. +.. |.+++.+.+||||+++++.+..+|.++
T Consensus       537 ~~~~~~--~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l  614 (889)
T KOG4658|consen  537 HIAGSS--ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGL  614 (889)
T ss_pred             hccCCC--CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHH
Confidence            444442  56689999999986  566655 47789999999999876 555 899999999999999999999999999


Q ss_pred             ccCCcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCC---ccCCCCcCCCCCCeEEee
Q 039152          156 GQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDAN---TLPRGGLFLEKPERIDLD  213 (259)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~---~~p~~~~~l~~L~~L~l~  213 (259)
                      +++..|.+|++..+..+..+|.. ..+++|++|.+......   ..-..+..+..|+.+.+.
T Consensus       615 ~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  615 GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence            99999999999987777777665 56999999999877632   122223344555555543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.07  E-value=1.1e-10  Score=98.17  Aligned_cols=129  Identities=26%  Similarity=0.208  Sum_probs=67.3

Q ss_pred             HhCCCCccEEEcCCCCCC-CCchhhcCCCC---CcEEEecCCCCCC------chhhhCC-CCCcEEEecCCCCc-----c
Q 039152           87 LRSMLQVRVLDLTDMNLL-SLPSSIGLLTN---LHTLCLYSCILKD------MAVISDL-KKLEILCLHGSSIY-----Q  150 (259)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~---L~~L~l~~~~~~~------~~~~~~l-~~L~~L~l~~~~i~-----~  150 (259)
                      |..+++|+.|++++|.+. ..+..+..+.+   |++|++++|.+..      ...+..+ ++|+.|++++|.+.     .
T Consensus        77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  156 (319)
T cd00116          77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA  156 (319)
T ss_pred             HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence            345666666666666665 23333333333   6666666666553      1334455 66666666666555     2


Q ss_pred             cchhhccCCcCCEEecCCCCCcee----eCCC-CCCCCCcEEEeeccCCC-----ccCCCCcCCCCCCeEEeecc
Q 039152          151 LPVEVGQLTQLRSLDLRHCSNLQV----IPLN-KHLPNLTSLELEVNDAN-----TLPRGGLFLEKPERIDLDAN  215 (259)
Q Consensus       151 lp~~i~~l~~L~~L~l~~~~~~~~----lp~~-~~l~~L~~L~l~~~~~~-----~~p~~~~~l~~L~~L~l~~~  215 (259)
                      ++..+..+++|++|++++|+....    ++.. ..+++|+.|++++|.++     .++..+..+++|+.|++++|
T Consensus       157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n  231 (319)
T cd00116         157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN  231 (319)
T ss_pred             HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence            333445555666666666433211    1100 23346666666666553     22333345566666666665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.04  E-value=1.1e-11  Score=102.92  Aligned_cols=92  Identities=26%  Similarity=0.313  Sum_probs=77.3

Q ss_pred             cccccccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecC-CCCcc
Q 039152           75 RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHG-SSIYQ  150 (259)
Q Consensus        75 ~lr~l~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~-~~i~~  150 (259)
                      +-+.+.++|..+   .+.-..+.|..|.|+.+|+ .|+.+++||.|+|+.|.|+.  |..+.++..|..|-+.+ |+|+.
T Consensus        54 r~~GL~eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~  130 (498)
T KOG4237|consen   54 RGKGLTEVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD  130 (498)
T ss_pred             cCCCcccCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence            444566777754   4567789999999999887 68999999999999999998  88999999988887777 89999


Q ss_pred             cchh-hccCCcCCEEecCCC
Q 039152          151 LPVE-VGQLTQLRSLDLRHC  169 (259)
Q Consensus       151 lp~~-i~~l~~L~~L~l~~~  169 (259)
                      +|.+ ++.+..++.|.+.-|
T Consensus       131 l~k~~F~gL~slqrLllNan  150 (498)
T KOG4237|consen  131 LPKGAFGGLSSLQRLLLNAN  150 (498)
T ss_pred             hhhhHhhhHHHHHHHhcChh
Confidence            9987 889999998877653

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.03  E-value=1.5e-10  Score=97.47  Aligned_cols=155  Identities=22%  Similarity=0.171  Sum_probs=110.8

Q ss_pred             ccHHHHhCCCCccEEEcCCCCCCC-------CchhhcCCCCCcEEEecCCCCCC--chhhhCCCC---CcEEEecCCCCc
Q 039152           82 IPQNLLRSMLQVRVLDLTDMNLLS-------LPSSIGLLTNLHTLCLYSCILKD--MAVISDLKK---LEILCLHGSSIY  149 (259)
Q Consensus        82 l~~~~~~~l~~L~~L~l~~~~~~~-------lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~---L~~L~l~~~~i~  149 (259)
                      ++.. +...+.++.++++++.+..       ++..+..+++|++|++++|.+..  +..+..+.+   |++|++++|++.
T Consensus        43 i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~  121 (319)
T cd00116          43 LASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG  121 (319)
T ss_pred             HHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccc
Confidence            3443 3567789999999887662       34456778899999999999875  455555555   999999999876


Q ss_pred             -----ccchhhccC-CcCCEEecCCCCCceeeCC----C-CCCCCCcEEEeeccCCC-----ccCCCCcCCCCCCeEEee
Q 039152          150 -----QLPVEVGQL-TQLRSLDLRHCSNLQVIPL----N-KHLPNLTSLELEVNDAN-----TLPRGGLFLEKPERIDLD  213 (259)
Q Consensus       150 -----~lp~~i~~l-~~L~~L~l~~~~~~~~lp~----~-~~l~~L~~L~l~~~~~~-----~~p~~~~~l~~L~~L~l~  213 (259)
                           .+...+..+ ++|+.|++++|........    . ..+++|++|++++|.++     .++..+..+++|+.|+++
T Consensus       122 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~  201 (319)
T cd00116         122 DRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLN  201 (319)
T ss_pred             hHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEecc
Confidence                 334456677 8999999999765421111    1 56678999999999886     244444566799999999


Q ss_pred             cccccCC-c----ccc-cccccceeecccc
Q 039152          214 ANVRLKD-Q----DTV-QLWGIEELSLAEL  237 (259)
Q Consensus       214 ~~~~~~~-~----~~~-~l~~L~~L~l~~~  237 (259)
                      +|..... .    ..+ .+++|+.|++++|
T Consensus       202 ~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n  231 (319)
T cd00116         202 NNGLTDEGASALAETLASLKSLEVLNLGDN  231 (319)
T ss_pred             CCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence            8843322 1    112 2788999999988

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.00  E-value=2.4e-10  Score=99.23  Aligned_cols=146  Identities=34%  Similarity=0.390  Sum_probs=84.4

Q ss_pred             CccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCCCC
Q 039152           92 QVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCS  170 (259)
Q Consensus        92 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~  170 (259)
                      +|+.|++++|.+..+|..+..+++|+.|++++|.+.. +...+.+++|+.|++++|.+..+|..+.....|+.+.+++|.
T Consensus       141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc
Confidence            5555555555555554445555555555555555555 333335555555555555555555544444445555555532


Q ss_pred             CceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeecccc
Q 039152          171 NLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAEL  237 (259)
Q Consensus       171 ~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~  237 (259)
                      .........++.++..+.+.+|.+..+|..++.+++++.|++++|.....+....+.+|+.|+++++
T Consensus       221 ~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n  287 (394)
T COG4886         221 IIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGN  287 (394)
T ss_pred             ceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccccccccccCccCEEeccCc
Confidence            2222222256666666666666666666666777777777777776666655444777777777776

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.00  E-value=3.5e-11  Score=96.95  Aligned_cols=128  Identities=20%  Similarity=0.234  Sum_probs=106.0

Q ss_pred             CCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCCCC
Q 039152           91 LQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCS  170 (259)
Q Consensus        91 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~  170 (259)
                      +.|+.+|+++|.++.+..++.-.+.+|.|++++|.+.....+..+++|+.||+++|.+.++...-.++.+.++|+++. +
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~-N  362 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ-N  362 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh-h
Confidence            468889999999998888888888999999999998886668889999999999998887766666788889999998 5


Q ss_pred             CceeeCCCCCCCCCcEEEeeccCCCcc--CCCCcCCCCCCeEEeecccccC
Q 039152          171 NLQVIPLNKHLPNLTSLELEVNDANTL--PRGGLFLEKPERIDLDANVRLK  219 (259)
Q Consensus       171 ~~~~lp~~~~l~~L~~L~l~~~~~~~~--p~~~~~l~~L~~L~l~~~~~~~  219 (259)
                      .+..+...+++.+|..||+++|++..+  -..|++++.|+++.+.+|....
T Consensus       363 ~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  363 KIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            667776668889999999999998644  3457899999999998884433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.99  E-value=2.2e-10  Score=99.52  Aligned_cols=155  Identities=25%  Similarity=0.343  Sum_probs=130.2

Q ss_pred             CCCCccEEEcCCCCCCCCchhhcCCC-CCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEec
Q 039152           89 SMLQVRVLDLTDMNLLSLPSSIGLLT-NLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDL  166 (259)
Q Consensus        89 ~l~~L~~L~l~~~~~~~lp~~i~~l~-~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l  166 (259)
                      .++.++.|++.++.+..+|.....+. +|+.|++++|.+.. +..++.+++|+.|+++.|++..+|...+..+.|+.|++
T Consensus       114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             cccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence            56789999999999999999888885 99999999999998 57899999999999999999999988878999999999


Q ss_pred             CCCCCceeeCCC-CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCccccc-ccccceeeccccchhhhhh
Q 039152          167 RHCSNLQVIPLN-KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQ-LWGIEELSLAELLDHIKNF  244 (259)
Q Consensus       167 ~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~  244 (259)
                      ++ +.+..+|.. .....|+.+.+++|.....+..+..+.++..+.+.++.....+..+. +.+++.|+++++  .+..+
T Consensus       194 s~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n--~i~~i  270 (394)
T COG4886         194 SG-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN--QISSI  270 (394)
T ss_pred             cC-CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccc--ccccc
Confidence            98 677888875 46666999999999776677777888888888877775555444444 888999999999  77777


Q ss_pred             hh
Q 039152          245 VN  246 (259)
Q Consensus       245 ~~  246 (259)
                      +.
T Consensus       271 ~~  272 (394)
T COG4886         271 SS  272 (394)
T ss_pred             cc
Confidence            65

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=8.9e-11  Score=98.72  Aligned_cols=158  Identities=20%  Similarity=0.167  Sum_probs=103.3

Q ss_pred             HHhCCCCccEEEcCCCCCCC---CchhhcCCCCCcEEEecCCCCCCc---hhhhCCCCCcEEEecCCCCc--ccchhhcc
Q 039152           86 LLRSMLQVRVLDLTDMNLLS---LPSSIGLLTNLHTLCLYSCILKDM---AVISDLKKLEILCLHGSSIY--QLPVEVGQ  157 (259)
Q Consensus        86 ~~~~l~~L~~L~l~~~~~~~---lp~~i~~l~~L~~L~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~--~lp~~i~~  157 (259)
                      ....+++++.|+++.|-+..   +-.-...+++|+.|+++.|.+..+   ..-..+.+|+.|.++.|++.  .+-.-...
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~  220 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT  220 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence            34567888888888876653   233345678888888888887662   22335678888888888776  33333556


Q ss_pred             CCcCCEEecCCCCCceeeC-CCCCCCCCcEEEeeccCCCccC--CCCcCCCCCCeEEeecccccCC--ccc------ccc
Q 039152          158 LTQLRSLDLRHCSNLQVIP-LNKHLPNLTSLELEVNDANTLP--RGGLFLEKPERIDLDANVRLKD--QDT------VQL  226 (259)
Q Consensus       158 l~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~l~~~~~~~~p--~~~~~l~~L~~L~l~~~~~~~~--~~~------~~l  226 (259)
                      +++|..|++..|....... ....+..|+.|+|++|++-.++  ..++.++.|..|+++.+...+.  +..      ..+
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f  300 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF  300 (505)
T ss_pred             CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence            7788888887763222111 1166778888888888876666  3356788888888887733332  222      228


Q ss_pred             cccceeeccccchhhhhhh
Q 039152          227 WGIEELSLAELLDHIKNFV  245 (259)
Q Consensus       227 ~~L~~L~l~~~~~~~~~~~  245 (259)
                      ++|++|++..+  .+.+.+
T Consensus       301 ~kL~~L~i~~N--~I~~w~  317 (505)
T KOG3207|consen  301 PKLEYLNISEN--NIRDWR  317 (505)
T ss_pred             ccceeeecccC--cccccc
Confidence            88888888888  554443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.96  E-value=2.1e-10  Score=92.58  Aligned_cols=122  Identities=21%  Similarity=0.156  Sum_probs=92.9

Q ss_pred             CCCCCcEEEecCCCCcccchhhccCCcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEee
Q 039152          134 DLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLD  213 (259)
Q Consensus       134 ~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~  213 (259)
                      ....|.++|+++|.|+.+.++..-++.++.|++++| .+..+.....+++|+.||+++|.++++..|-..+.++++|.++
T Consensus       282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hHhhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence            345688999999999999888888999999999984 4555555578899999999999998887776688899999999


Q ss_pred             cccccCCcccccccccceeeccccchhhhhhhhhhhhcccccccC
Q 039152          214 ANVRLKDQDTVQLWGIEELSLAELLDHIKNFVNKLVKVGSSQLKY  258 (259)
Q Consensus       214 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~  258 (259)
                      +|..-.....-.+-+|++|+++++  .++++-+--..+.+|.|++
T Consensus       361 ~N~iE~LSGL~KLYSLvnLDl~~N--~Ie~ldeV~~IG~LPCLE~  403 (490)
T KOG1259|consen  361 QNKIETLSGLRKLYSLVNLDLSSN--QIEELDEVNHIGNLPCLET  403 (490)
T ss_pred             hhhHhhhhhhHhhhhheecccccc--chhhHHHhcccccccHHHH
Confidence            885544333333778888888888  6666654333456666654

>PLN03150 hypothetical protein; Provisional

Probab=98.93  E-value=5.5e-09  Score=95.62  Aligned_cols=101  Identities=27%  Similarity=0.363  Sum_probs=55.5

Q ss_pred             ccEEEcCCCCCC-CCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCc-ccchhhccCCcCCEEecCC
Q 039152           93 VRVLDLTDMNLL-SLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIY-QLPVEVGQLTQLRSLDLRH  168 (259)
Q Consensus        93 L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~  168 (259)
                      ++.|++++|.+. .+|..++.+++|++|++++|.+.+  |+.++.+++|++|++++|++. .+|..++++++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            445555555555 455555566666666666665554  445555666666666666555 4555556666666666665


Q ss_pred             CCCceeeCCC--CCCCCCcEEEeeccC
Q 039152          169 CSNLQVIPLN--KHLPNLTSLELEVND  193 (259)
Q Consensus       169 ~~~~~~lp~~--~~l~~L~~L~l~~~~  193 (259)
                      |...+.+|..  ....++..+++.+|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            5544455543  122344455555554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=7e-10  Score=93.43  Aligned_cols=177  Identities=20%  Similarity=0.231  Sum_probs=125.9

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCch--hhcCCCCCcEEEecCCCCCC----chhhhCCCCCcEEEecCCCCcccch
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPS--SIGLLTNLHTLCLYSCILKD----MAVISDLKKLEILCLHGSSIYQLPV  153 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~----~~~~~~l~~L~~L~l~~~~i~~lp~  153 (259)
                      .++...- ++++.|+.+.+.++.+...+.  ....|++++.|+++.|-+..    ..-...+++|+.|+++.|++.....
T Consensus       111 Dki~akQ-sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~  189 (505)
T KOG3207|consen  111 DKIAAKQ-SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS  189 (505)
T ss_pred             HHHHHHh-hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc
Confidence            3444443 588999999999998886663  56789999999999999887    2556689999999999998763322


Q ss_pred             h--hccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccC-CCccCCCCcCCCCCCeEEeecccccCCc---cccc
Q 039152          154 E--VGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVND-ANTLPRGGLFLEKPERIDLDANVRLKDQ---DTVQ  225 (259)
Q Consensus       154 ~--i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~-~~~~p~~~~~l~~L~~L~l~~~~~~~~~---~~~~  225 (259)
                      +  -..+.+|+.|.++.|+....--..  ..+|+|+.|++.+|. +..-.....-+..|++|++++|.....+   ....
T Consensus       190 s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~  269 (505)
T KOG3207|consen  190 SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGT  269 (505)
T ss_pred             ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccc
Confidence            2  236788999999999765321111  788999999999994 3322222245778999999998554443   3334


Q ss_pred             ccccceeeccccchhhhhh--hhh--hh-hcccccccCC
Q 039152          226 LWGIEELSLAELLDHIKNF--VNK--LV-KVGSSQLKYL  259 (259)
Q Consensus       226 l~~L~~L~l~~~~~~~~~~--~~~--l~-~~~l~~L~~L  259 (259)
                      ++.|+.|+++.+  ++.++  |+.  .+ ...|++|++|
T Consensus       270 l~~L~~Lnls~t--gi~si~~~d~~s~~kt~~f~kL~~L  306 (505)
T KOG3207|consen  270 LPGLNQLNLSST--GIASIAEPDVESLDKTHTFPKLEYL  306 (505)
T ss_pred             ccchhhhhcccc--CcchhcCCCccchhhhcccccceee
Confidence            999999999999  66555  221  00 1356777664

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.76  E-value=9.2e-09  Score=64.67  Aligned_cols=56  Identities=32%  Similarity=0.402  Sum_probs=30.6

Q ss_pred             CccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCC
Q 039152           92 QVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSS  147 (259)
Q Consensus        92 ~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~  147 (259)
                      +|++|++++|.+..+|. .+..+++|++|++++|.++.  +..+..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45556666665555543 44555555555555555555  3345555555555555554

...

>PLN03150 hypothetical protein; Provisional

Probab=98.74  E-value=2.8e-08  Score=91.05  Aligned_cols=104  Identities=28%  Similarity=0.292  Sum_probs=85.3

Q ss_pred             CcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCc-ccchhhccCCcCCEEecCCCCCceeeCCC-CCCCCCcEEEeec
Q 039152          116 LHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIY-QLPVEVGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEV  191 (259)
Q Consensus       116 L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~  191 (259)
                      ++.|+|++|.+.+  |..++.+++|++|++++|.+. .+|..++.+++|+.|++++|...+.+|.. +++++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            6788899998887  788999999999999999887 78888999999999999998777777776 8889999999999


Q ss_pred             cCCC-ccCCCCcCC-CCCCeEEeecccccC
Q 039152          192 NDAN-TLPRGGLFL-EKPERIDLDANVRLK  219 (259)
Q Consensus       192 ~~~~-~~p~~~~~l-~~L~~L~l~~~~~~~  219 (259)
                      |.++ .+|..++.+ .++..+++.+|....
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCcccc
Confidence            9884 888876643 466778877774433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.65  E-value=3e-08  Score=62.32  Aligned_cols=57  Identities=32%  Similarity=0.419  Sum_probs=41.5

Q ss_pred             CCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccch-hhccCCcCCEEecCCCC
Q 039152          114 TNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPV-EVGQLTQLRSLDLRHCS  170 (259)
Q Consensus       114 ~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~  170 (259)
                      ++|++|++++|.++. + ..+..+++|++|++++|.++.+|+ .+..+++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            367778888887777 3 566777888888888877777765 36777778887777753

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=1.7e-09  Score=87.23  Aligned_cols=145  Identities=17%  Similarity=0.171  Sum_probs=82.0

Q ss_pred             ccEEEcCCCCCC--CCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCC-CCcccc--hhhccCCcCCEEe
Q 039152           93 VRVLDLTDMNLL--SLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGS-SIYQLP--VEVGQLTQLRSLD  165 (259)
Q Consensus        93 L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~-~i~~lp--~~i~~l~~L~~L~  165 (259)
                      |+++|++...++  .+-.-++.|.+|+-|.+.++++.+  ...+.+-.+|+.++++++ ++++-.  --+.+++.|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            445555555444  233334445555555555555554  234444455555555544 233111  1133445555555


Q ss_pred             cCCCCCceeeCC------------------------C------CCCCCCcEEEeeccC-CC-ccCCCCcCCCCCCeEEee
Q 039152          166 LRHCSNLQVIPL------------------------N------KHLPNLTSLELEVND-AN-TLPRGGLFLEKPERIDLD  213 (259)
Q Consensus       166 l~~~~~~~~lp~------------------------~------~~l~~L~~L~l~~~~-~~-~~p~~~~~l~~L~~L~l~  213 (259)
                      +++|........                        .      .++++|..||++.|. ++ .+...+..++.|++|.++
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls  346 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS  346 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence            555433322111                        0      678888999998875 33 333445688889999999


Q ss_pred             cccccCCccccc---ccccceeecccc
Q 039152          214 ANVRLKDQDTVQ---LWGIEELSLAEL  237 (259)
Q Consensus       214 ~~~~~~~~~~~~---l~~L~~L~l~~~  237 (259)
                      .|........+.   .++|.+|++-+|
T Consensus       347 RCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  347 RCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhcCCChHHeeeeccCcceEEEEeccc
Confidence            987777655554   788888988877

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.54  E-value=8.9e-09  Score=90.02  Aligned_cols=107  Identities=25%  Similarity=0.282  Sum_probs=72.7

Q ss_pred             hCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecC
Q 039152           88 RSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLR  167 (259)
Q Consensus        88 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~  167 (259)
                      ..+++|..+++.+|.+..+...+..+.+|++|++++|.|.....+..++.|+.|++.+|.|..+. ++..++.|+.++++
T Consensus        92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~  170 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLS  170 (414)
T ss_pred             ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccCC
Confidence            45677777788877777666656677778888888887777666777777778888887777553 34557777777777


Q ss_pred             CCCCceeeCC--CCCCCCCcEEEeeccCCCc
Q 039152          168 HCSNLQVIPL--NKHLPNLTSLELEVNDANT  196 (259)
Q Consensus       168 ~~~~~~~lp~--~~~l~~L~~L~l~~~~~~~  196 (259)
                      +| .+..+..  ...+.+++.+.+.+|.+..
T Consensus       171 ~n-~i~~ie~~~~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  171 YN-RIVDIENDELSELISLEELDLGGNSIRE  200 (414)
T ss_pred             cc-hhhhhhhhhhhhccchHHHhccCCchhc
Confidence            74 3344443  2466666666666666543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.49  E-value=2.7e-09  Score=95.26  Aligned_cols=150  Identities=25%  Similarity=0.248  Sum_probs=102.3

Q ss_pred             cHHHHhCCCCccEEEcCCCCCCCCch------hh--------------------cCC------CCCcEEEecCCCCCC-c
Q 039152           83 PQNLLRSMLQVRVLDLTDMNLLSLPS------SI--------------------GLL------TNLHTLCLYSCILKD-M  129 (259)
Q Consensus        83 ~~~~~~~l~~L~~L~l~~~~~~~lp~------~i--------------------~~l------~~L~~L~l~~~~~~~-~  129 (259)
                      |-++| .++.||+|.+.++.+...-.      .+                    +..      ..|.+.+.++|.+.. -
T Consensus       102 pi~if-pF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD  180 (1096)
T KOG1859|consen  102 PISIF-PFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMD  180 (1096)
T ss_pred             Cceec-cccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHH
Confidence            44555 68899999999887653111      01                    110      113344555555555 3


Q ss_pred             hhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCCCcCCCCC
Q 039152          130 AVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRGGLFLEKP  207 (259)
Q Consensus       130 ~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~~~~l~~L  207 (259)
                      .++.-++.|+.|||++|++.... .+..+++|++|+++. +.+..+|..  ..+. |+.|.+++|.++.+ .++.++.+|
T Consensus       181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gie~LksL  256 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCK-LQLLNLRNNALTTL-RGIENLKSL  256 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhhhH-HHHhccccccccccc-chhccccccchhhhh-heeeeecccHHHhh-hhHHhhhhh
Confidence            56666778888899888887664 678888899999988 667777765  3333 88888888888776 345788889


Q ss_pred             CeEEeecccccCC---cccccccccceeecccc
Q 039152          208 ERIDLDANVRLKD---QDTVQLWGIEELSLAEL  237 (259)
Q Consensus       208 ~~L~l~~~~~~~~---~~~~~l~~L~~L~l~~~  237 (259)
                      +.|+++.|....-   ...+.+..|..|.|.+|
T Consensus       257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN  289 (1096)
T KOG1859|consen  257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN  289 (1096)
T ss_pred             hccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence            9999988854444   23334888888888887

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.39  E-value=1.3e-07  Score=77.88  Aligned_cols=147  Identities=20%  Similarity=0.202  Sum_probs=107.0

Q ss_pred             hCCCCccEEEcCCCCCC-C----CchhhcCCCCCcEEEecCCCCCC--ch-------------hhhCCCCCcEEEecCCC
Q 039152           88 RSMLQVRVLDLTDMNLL-S----LPSSIGLLTNLHTLCLYSCILKD--MA-------------VISDLKKLEILCLHGSS  147 (259)
Q Consensus        88 ~~l~~L~~L~l~~~~~~-~----lp~~i~~l~~L~~L~l~~~~~~~--~~-------------~~~~l~~L~~L~l~~~~  147 (259)
                      -+.+.|++|+|++|.|. .    +-+-+..+..|+.|.+.+|.+..  -.             ..+.-++|+++...+|+
T Consensus        89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr  168 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR  168 (382)
T ss_pred             hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence            36679999999999887 2    22346678899999999998764  11             23445789999999998


Q ss_pred             Cc-----ccchhhccCCcCCEEecCCCCCceeeCCC--------CCCCCCcEEEeeccCCC-----ccCCCCcCCCCCCe
Q 039152          148 IY-----QLPVEVGQLTQLRSLDLRHCSNLQVIPLN--------KHLPNLTSLELEVNDAN-----TLPRGGLFLEKPER  209 (259)
Q Consensus       148 i~-----~lp~~i~~l~~L~~L~l~~~~~~~~lp~~--------~~l~~L~~L~l~~~~~~-----~~p~~~~~l~~L~~  209 (259)
                      +.     .+...+...+.|+.+.+..|+   ..|.+        .++++|+.||+..|.++     .+...+..|+.|+.
T Consensus       169 len~ga~~~A~~~~~~~~leevr~~qN~---I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E  245 (382)
T KOG1909|consen  169 LENGGATALAEAFQSHPTLEEVRLSQNG---IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE  245 (382)
T ss_pred             cccccHHHHHHHHHhccccceEEEeccc---ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence            76     334456777888888888753   23333        78899999999999875     44555667889999


Q ss_pred             EEeecc-cccCCccccc------ccccceeecccc
Q 039152          210 IDLDAN-VRLKDQDTVQ------LWGIEELSLAEL  237 (259)
Q Consensus       210 L~l~~~-~~~~~~~~~~------l~~L~~L~l~~~  237 (259)
                      +++..| ....+...+.      .++|+.|.+.+|
T Consensus       246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN  280 (382)
T KOG1909|consen  246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN  280 (382)
T ss_pred             ecccccccccccHHHHHHHHhccCCCCceeccCcc
Confidence            999988 4444432222      778888888888

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.36  E-value=1e-06  Score=51.16  Aligned_cols=37  Identities=32%  Similarity=0.395  Sum_probs=17.6

Q ss_pred             CCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCccc
Q 039152          115 NLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQL  151 (259)
Q Consensus       115 ~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l  151 (259)
                      +|++|++++|.+++ ++.++.+++|++|++++|+++.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            44555555555555 33355555555555555554433

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.35  E-value=1.9e-08  Score=89.93  Aligned_cols=130  Identities=22%  Similarity=0.243  Sum_probs=96.9

Q ss_pred             chhhcCCCCCcEEEecCCCCCCchhhhC---------------------------------CCCCcEEEecCCCCcccch
Q 039152          107 PSSIGLLTNLHTLCLYSCILKDMAVISD---------------------------------LKKLEILCLHGSSIYQLPV  153 (259)
Q Consensus       107 p~~i~~l~~L~~L~l~~~~~~~~~~~~~---------------------------------l~~L~~L~l~~~~i~~lp~  153 (259)
                      |-.|..+..||+|.+.++.+.....+..                                 .-.|.+.+++.|.+..+..
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~  181 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDE  181 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHH
Confidence            5568889999999999987643111110                                 1136677778888887878


Q ss_pred             hhccCCcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceee
Q 039152          154 EVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELS  233 (259)
Q Consensus       154 ~i~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~  233 (259)
                      ++.-++.+++|++++|+ +........++.|++||+++|.++.+|..-..-..|+.|.+++|.-...-..-.+++|+.|+
T Consensus       182 SLqll~ale~LnLshNk-~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LD  260 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHNK-FTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLD  260 (1096)
T ss_pred             HHHHHHHhhhhccchhh-hhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccc
Confidence            88889999999999954 44444447889999999999999999876332234999999998555544444599999999


Q ss_pred             cccc
Q 039152          234 LAEL  237 (259)
Q Consensus       234 l~~~  237 (259)
                      +++|
T Consensus       261 lsyN  264 (1096)
T KOG1859|consen  261 LSYN  264 (1096)
T ss_pred             hhHh
Confidence            9988

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.35  E-value=4.1e-08  Score=85.86  Aligned_cols=129  Identities=24%  Similarity=0.276  Sum_probs=104.7

Q ss_pred             CCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchh-hhCCCCCcEEEecCCCCcccchhhccCCcCCEEecC
Q 039152           89 SMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAV-ISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLR  167 (259)
Q Consensus        89 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~  167 (259)
                      .+..+..+.+..|.+...-..++.+++|.+|++.+|.+..... +..+++|++|++++|.|+.+. ++..++.|+.|++.
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS  148 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheec
Confidence            4556666668888887755567889999999999999999666 899999999999999999774 47778889999999


Q ss_pred             CCCCceeeCCCCCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeecccccC
Q 039152          168 HCSNLQVIPLNKHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDANVRLK  219 (259)
Q Consensus       168 ~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~  219 (259)
                      + +.+..+.....+++|+.+++++|.+..++.. ...+.+++.+.+.++....
T Consensus       149 ~-N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  149 G-NLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIRE  200 (414)
T ss_pred             c-CcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhc
Confidence            9 5667777667799999999999999877663 3678888888888764333

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.33  E-value=9.4e-07  Score=51.30  Aligned_cols=41  Identities=29%  Similarity=0.434  Sum_probs=35.2

Q ss_pred             CCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchh
Q 039152           91 LQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAV  131 (259)
Q Consensus        91 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~  131 (259)
                      ++|++|++++|.++.+|..++++++|++|++++|.+++.+.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            47999999999999999989999999999999999987433

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.32  E-value=2.4e-07  Score=85.18  Aligned_cols=77  Identities=23%  Similarity=0.465  Sum_probs=37.6

Q ss_pred             CCccEEEcCCCCCC--CCchhhc-CCCCCcEEEecCCCCCC---chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEE
Q 039152           91 LQVRVLDLTDMNLL--SLPSSIG-LLTNLHTLCLYSCILKD---MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSL  164 (259)
Q Consensus        91 ~~L~~L~l~~~~~~--~lp~~i~-~l~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L  164 (259)
                      .+|+.|++++...-  ..|..++ -++.|+.|.+++-.+..   ..-..++++|..||++++++..+ .+++++++|+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            34555555554221  2333333 24555555555544433   12333455555555555555555 445555555555


Q ss_pred             ecCC
Q 039152          165 DLRH  168 (259)
Q Consensus       165 ~l~~  168 (259)
                      .+.+
T Consensus       201 ~mrn  204 (699)
T KOG3665|consen  201 SMRN  204 (699)
T ss_pred             hccC
Confidence            5543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.25  E-value=8.1e-07  Score=81.78  Aligned_cols=112  Identities=21%  Similarity=0.287  Sum_probs=82.2

Q ss_pred             cHHHHhCCCCccEEEcCCCCCC--CCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccc--hhhccC
Q 039152           83 PQNLLRSMLQVRVLDLTDMNLL--SLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLP--VEVGQL  158 (259)
Q Consensus        83 ~~~~~~~l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l  158 (259)
                      |..+..-+|.|+.|.+.+-.+.  ++..-..++++|+.||++++.++...+++.+++|++|.+++-.+..-.  ..+.+|
T Consensus       140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L  219 (699)
T KOG3665|consen  140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNL  219 (699)
T ss_pred             HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence            3344557889999998887665  334445678889999999999888888899999999988876666322  357789


Q ss_pred             CcCCEEecCCCCCceeeCCC--------CCCCCCcEEEeeccCCC
Q 039152          159 TQLRSLDLRHCSNLQVIPLN--------KHLPNLTSLELEVNDAN  195 (259)
Q Consensus       159 ~~L~~L~l~~~~~~~~lp~~--------~~l~~L~~L~l~~~~~~  195 (259)
                      ++|++||++.-.. ...+..        ..+|+|+.||.+++.+.
T Consensus       220 ~~L~vLDIS~~~~-~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  220 KKLRVLDISRDKN-NDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             cCCCeeecccccc-ccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            9999999987322 222211        56889999999887753

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.19  E-value=8.6e-07  Score=73.14  Aligned_cols=170  Identities=22%  Similarity=0.261  Sum_probs=111.3

Q ss_pred             HHhCCCCccEEEcCCCCCC----CCch-------hhcCCCCCcEEEecCCCCCC--c----hhhhCCCCCcEEEecCCCC
Q 039152           86 LLRSMLQVRVLDLTDMNLL----SLPS-------SIGLLTNLHTLCLYSCILKD--M----AVISDLKKLEILCLHGSSI  148 (259)
Q Consensus        86 ~~~~l~~L~~L~l~~~~~~----~lp~-------~i~~l~~L~~L~l~~~~~~~--~----~~~~~l~~L~~L~l~~~~i  148 (259)
                      ...+.+.|+..++++-...    .+|+       .+-.+++|++|+|++|.+..  +    .-+.++..|+.|.+.+|++
T Consensus        53 ~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl  132 (382)
T KOG1909|consen   53 VLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL  132 (382)
T ss_pred             HHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence            3456778888888764222    3443       33466789999999998765  3    3466788899999999877


Q ss_pred             cccc--------------hhhccCCcCCEEecCCCCCceeeCCC------CCCCCCcEEEeeccCCC-----ccCCCCcC
Q 039152          149 YQLP--------------VEVGQLTQLRSLDLRHCSNLQVIPLN------KHLPNLTSLELEVNDAN-----TLPRGGLF  203 (259)
Q Consensus       149 ~~lp--------------~~i~~l~~L~~L~l~~~~~~~~lp~~------~~l~~L~~L~l~~~~~~-----~~p~~~~~  203 (259)
                      ....              ..+.+-++|+++..++ +.+...+..      ...+.|+.+.+..|.+.     .+...+..
T Consensus       133 g~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~  211 (382)
T KOG1909|consen  133 GPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEH  211 (382)
T ss_pred             ChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHh
Confidence            5221              2244567788888877 444444443      55688999999988874     22333568


Q ss_pred             CCCCCeEEeecc-cccCCccccc-----ccccceeeccccchhhhh-----hhhhhhhcccccccCC
Q 039152          204 LEKPERIDLDAN-VRLKDQDTVQ-----LWGIEELSLAELLDHIKN-----FVNKLVKVGSSQLKYL  259 (259)
Q Consensus       204 l~~L~~L~l~~~-~~~~~~~~~~-----l~~L~~L~l~~~~~~~~~-----~~~~l~~~~l~~L~~L  259 (259)
                      ++.|+.|++..| +...+...+.     +++|+.|++++|  .+++     +...+ ..+.|.|+.|
T Consensus       212 ~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc--ll~~~Ga~a~~~al-~~~~p~L~vl  275 (382)
T KOG1909|consen  212 CPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC--LLENEGAIAFVDAL-KESAPSLEVL  275 (382)
T ss_pred             CCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc--ccccccHHHHHHHH-hccCCCCcee
Confidence            899999999988 4444433222     788999999988  4333     33333 3456666543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.12  E-value=5.4e-06  Score=63.63  Aligned_cols=59  Identities=34%  Similarity=0.411  Sum_probs=27.5

Q ss_pred             CccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhC-CCCCcEEEecCCCCccc
Q 039152           92 QVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISD-LKKLEILCLHGSSIYQL  151 (259)
Q Consensus        92 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~-l~~L~~L~l~~~~i~~l  151 (259)
                      ..-.+|+++|.+..++. +..++.|.+|.+..|.++. -+.+.. +++|++|.+.+|+|.++
T Consensus        43 ~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l  103 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL  103 (233)
T ss_pred             ccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh
Confidence            33445555555444333 4445555555555555554 222222 34455555555554433

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.11  E-value=1.2e-05  Score=69.15  Aligned_cols=78  Identities=24%  Similarity=0.369  Sum_probs=54.2

Q ss_pred             CCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCC-CCC-chhhhCCCCCcEEEecCC-CCcccchhhccCCcCCEEe
Q 039152           89 SMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCI-LKD-MAVISDLKKLEILCLHGS-SIYQLPVEVGQLTQLRSLD  165 (259)
Q Consensus        89 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~-~~~-~~~~~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~  165 (259)
                      .+++++.|++++|.++.+|. +  ..+|+.|.+++|. ++. |..+  ..+|++|++++| .+..+|.+      |+.|+
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~  118 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLE  118 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEE
Confidence            46889999999999998883 2  3469999998755 444 4434  258999999998 77788765      44444


Q ss_pred             cCC--CCCceeeCC
Q 039152          166 LRH--CSNLQVIPL  177 (259)
Q Consensus       166 l~~--~~~~~~lp~  177 (259)
                      +..  |..+..+|.
T Consensus       119 L~~n~~~~L~~LPs  132 (426)
T PRK15386        119 IKGSATDSIKNVPN  132 (426)
T ss_pred             eCCCCCcccccCcc
Confidence            443  223455554

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.11  E-value=1.6e-05  Score=68.23  Aligned_cols=109  Identities=24%  Similarity=0.307  Sum_probs=67.2

Q ss_pred             CCCccEEEcCCC-CCCCCchhhcCCCCCcEEEecCC-CCCC-chhhhCCCCCcEEEecCCC---CcccchhhccCCcCCE
Q 039152           90 MLQVRVLDLTDM-NLLSLPSSIGLLTNLHTLCLYSC-ILKD-MAVISDLKKLEILCLHGSS---IYQLPVEVGQLTQLRS  163 (259)
Q Consensus        90 l~~L~~L~l~~~-~~~~lp~~i~~l~~L~~L~l~~~-~~~~-~~~~~~l~~L~~L~l~~~~---i~~lp~~i~~l~~L~~  163 (259)
                      ..+|+.|.+.+| .++.+|+.+.  .+|++|.+++| .+.. |+      +|+.|++..+.   +..+|.++      +.
T Consensus        71 P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n~~~~L~~LPssL------k~  136 (426)
T PRK15386         71 PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRSLEIKGSATDSIKNVPNGL------TS  136 (426)
T ss_pred             CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccceEEeCCCCCcccccCcchH------hh
Confidence            346899999875 5567777653  58999999988 4554 43      47777887764   44666654      44


Q ss_pred             EecCCCCCce--eeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecc
Q 039152          164 LDLRHCSNLQ--VIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDAN  215 (259)
Q Consensus       164 L~l~~~~~~~--~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~  215 (259)
                      |.+.+++...  .+|. .-.++|++|++++|....+|..+.  .+|+.|.+..+
T Consensus       137 L~I~~~n~~~~~~lp~-~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        137 LSINSYNPENQARIDN-LISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             eecccccccccccccc-ccCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence            5553322111  1110 112578888888877655554422  47778887654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=7.1e-08  Score=78.03  Aligned_cols=80  Identities=23%  Similarity=0.291  Sum_probs=66.0

Q ss_pred             CCcEEEecCCCCCC---chhhhCCCCCcEEEecCCCCc-ccchhhccCCcCCEEecCCCCCceeeCCC---CCCCCCcEE
Q 039152          115 NLHTLCLYSCILKD---MAVISDLKKLEILCLHGSSIY-QLPVEVGQLTQLRSLDLRHCSNLQVIPLN---KHLPNLTSL  187 (259)
Q Consensus       115 ~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~---~~l~~L~~L  187 (259)
                      .|++||++...++.   .--++.+.+|+.|.+.+++++ .+...|.+-.+|+.++++.|+.+......   ..++.|+.|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            48999999988876   355778899999999999887 66667888899999999998876655444   788999999


Q ss_pred             EeeccCC
Q 039152          188 ELEVNDA  194 (259)
Q Consensus       188 ~l~~~~~  194 (259)
                      ++++|.+
T Consensus       266 NlsWc~l  272 (419)
T KOG2120|consen  266 NLSWCFL  272 (419)
T ss_pred             CchHhhc
Confidence            9998875

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=9.4e-07  Score=71.65  Aligned_cols=83  Identities=27%  Similarity=0.355  Sum_probs=60.8

Q ss_pred             hCCCCccEEEcCCCCCCC---CchhhcCCCCCcEEEecCCCCCC-chhh-hCCCCCcEEEecCCCCc--ccchhhccCCc
Q 039152           88 RSMLQVRVLDLTDMNLLS---LPSSIGLLTNLHTLCLYSCILKD-MAVI-SDLKKLEILCLHGSSIY--QLPVEVGQLTQ  160 (259)
Q Consensus        88 ~~l~~L~~L~l~~~~~~~---lp~~i~~l~~L~~L~l~~~~~~~-~~~~-~~l~~L~~L~l~~~~i~--~lp~~i~~l~~  160 (259)
                      +..+.++.+++.+|.++.   +..-+.++++|++|+++.|.+.. +..+ ..+.+|++|-+.++.+.  .....+..++.
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            356778888898888874   33344578888999999888876 4444 46778888888888665  55555777888


Q ss_pred             CCEEecCCCC
Q 039152          161 LRSLDLRHCS  170 (259)
Q Consensus       161 L~~L~l~~~~  170 (259)
                      ++.|+++.|+
T Consensus       148 vtelHmS~N~  157 (418)
T KOG2982|consen  148 VTELHMSDNS  157 (418)
T ss_pred             hhhhhhccch
Confidence            8888887753

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.02  E-value=4.1e-07  Score=65.54  Aligned_cols=77  Identities=19%  Similarity=0.252  Sum_probs=34.9

Q ss_pred             CccEEEcCCCCCCCCchhhc-CCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCC
Q 039152           92 QVRVLDLTDMNLLSLPSSIG-LLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRH  168 (259)
Q Consensus        92 ~L~~L~l~~~~~~~lp~~i~-~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~  168 (259)
                      .|+..++++|.+.++|..+. .++..+.|++++|.+.+ |..+..++.|+.|+++.|.+...|.-+..+.++-.|+...
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~  132 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPE  132 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCC
Confidence            44444455554444444332 22344444444444444 4444444444444444444444444444444444444433

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.84  E-value=3.5e-06  Score=60.79  Aligned_cols=107  Identities=22%  Similarity=0.265  Sum_probs=58.4

Q ss_pred             ccEEEcCCCCCCCCch---hhcCCCCCcEEEecCCCCCC-chhhhC-CCCCcEEEecCCCCcccchhhccCCcCCEEecC
Q 039152           93 VRVLDLTDMNLLSLPS---SIGLLTNLHTLCLYSCILKD-MAVISD-LKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLR  167 (259)
Q Consensus        93 L~~L~l~~~~~~~lp~---~i~~l~~L~~L~l~~~~~~~-~~~~~~-l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~  167 (259)
                      +..+++++|.+-.+++   .+....+|...++++|.++. |+.+.. .+...++++++|.+.++|..+..++.|+.|+++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~  108 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR  108 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence            3445555555543333   23444555556666666666 544443 335666666666666666666666666666666


Q ss_pred             CCCCceeeCCC-CCCCCCcEEEeeccCCCccCCC
Q 039152          168 HCSNLQVIPLN-KHLPNLTSLELEVNDANTLPRG  200 (259)
Q Consensus       168 ~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~~p~~  200 (259)
                      .| .+...|.. ..+.+|..|+..+|....+|-.
T Consensus       109 ~N-~l~~~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  109 FN-PLNAEPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             cC-ccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence            53 33333333 3455566666665555544443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.82  E-value=4.2e-05  Score=58.83  Aligned_cols=121  Identities=20%  Similarity=0.233  Sum_probs=86.0

Q ss_pred             cEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhcc-CCcCCEEecCCCCCc
Q 039152           94 RVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQ-LTQLRSLDLRHCSNL  172 (259)
Q Consensus        94 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~-l~~L~~L~l~~~~~~  172 (259)
                      +.+++.+..+..+..-=..+.+...+++++|.+.....+..++.|.+|.+.+|+|..+.+.+.. +++|..|.+.+ +.+
T Consensus        22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi  100 (233)
T KOG1644|consen   22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSI  100 (233)
T ss_pred             cccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecC-cch
Confidence            4556666555432221112345678889998887777788888999999999999988777664 46699999987 455


Q ss_pred             eeeCCC---CCCCCCcEEEeeccCCCccCCC----CcCCCCCCeEEeecc
Q 039152          173 QVIPLN---KHLPNLTSLELEVNDANTLPRG----GLFLEKPERIDLDAN  215 (259)
Q Consensus       173 ~~lp~~---~~l~~L~~L~l~~~~~~~~p~~----~~~l~~L~~L~l~~~  215 (259)
                      +.+...   ..++.|++|.+-+|+++.-+..    +..+++|+.|+....
T Consensus       101 ~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  101 QELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             hhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            555443   7888999999999987644432    557889999988854

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.78  E-value=1.1e-06  Score=70.58  Aligned_cols=100  Identities=23%  Similarity=0.232  Sum_probs=77.3

Q ss_pred             hCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccch--hhccCCcCCEEe
Q 039152           88 RSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPV--EVGQLTQLRSLD  165 (259)
Q Consensus        88 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~  165 (259)
                      +.+.+.+.|++-+|.+..+.- +.+++.|.+|.|+-|.++....+..|++|+.|+|+.|.|..+.+  .+.++++|+.|-
T Consensus        16 sdl~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   16 SDLENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             hHHHHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            346677788888888775443 45688888888888888887778888889999998888876543  477888899998


Q ss_pred             cCCCCCceeeCCC------CCCCCCcEEE
Q 039152          166 LRHCSNLQVIPLN------KHLPNLTSLE  188 (259)
Q Consensus       166 l~~~~~~~~lp~~------~~l~~L~~L~  188 (259)
                      +..|.+.+.-+..      .-++||++||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            8888777766665      6678888876

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.71  E-value=5.4e-05  Score=60.93  Aligned_cols=79  Identities=19%  Similarity=0.248  Sum_probs=38.6

Q ss_pred             CCCccEEEcCCCCCC-----CCchhhcCCCCCcEEEecCCCCC---C---------chhhhCCCCCcEEEecCCCCc-cc
Q 039152           90 MLQVRVLDLTDMNLL-----SLPSSIGLLTNLHTLCLYSCILK---D---------MAVISDLKKLEILCLHGSSIY-QL  151 (259)
Q Consensus        90 l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~~~---~---------~~~~~~l~~L~~L~l~~~~i~-~l  151 (259)
                      +..++.+++++|.|.     .+...|.+-.+|+..++++-...   +         .+.+-+|++|+..+++.|-+. +.
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            455666666666554     23334444555555555443211   1         134445556666666655433 22


Q ss_pred             ch----hhccCCcCCEEecCC
Q 039152          152 PV----EVGQLTQLRSLDLRH  168 (259)
Q Consensus       152 p~----~i~~l~~L~~L~l~~  168 (259)
                      |+    -|.+-+.|.+|.+++
T Consensus       109 ~e~L~d~is~~t~l~HL~l~N  129 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNN  129 (388)
T ss_pred             chHHHHHHhcCCCceeEEeec
Confidence            22    244445556665555

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.48  E-value=8e-05  Score=60.00  Aligned_cols=215  Identities=14%  Similarity=0.103  Sum_probs=133.9

Q ss_pred             HHHHHHHHHHHHHHHhcCccccC-CCcEEccHHHHHHHHHHhhcccceEEecCCCccccccCccC--c-ccccccccHHH
Q 039152           11 KEARARVHTLVNKLKAFCMLLDD-DENIFMHDVACDVAISITSREQNMFTATDELVSGWEWSDEG--R-KNSFFAIPQNL   86 (259)
Q Consensus        11 e~~~~~~~~~i~~L~~~~l~~~~-~~~~~mHdli~dl~~~~~~~e~~~~~~~~~~~~~~~~~~~~--~-lr~l~~l~~~~   86 (259)
                      ++...|+.++..   ...+.... .+...=-..++.+|.-++..++-..+--..     .+....  . ...+.-+.+.+
T Consensus        17 eDvk~v~eel~~---~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd-----~ftgr~kde~~~~L~~Ll~aL   88 (388)
T COG5238          17 EDVKGVVEELEM---MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD-----AFTGRDKDELYSNLVMLLKAL   88 (388)
T ss_pred             chhhHHHHHHHh---hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh-----hhhcccHHHHHHHHHHHHHHH
Confidence            444445444433   23444444 444444577888888888855522111010     122111  0 00112223333


Q ss_pred             HhCCCCccEEEcCCCCCC-CCc----hhhcCCCCCcEEEecCCCCCC--ch-------------hhhCCCCCcEEEecCC
Q 039152           87 LRSMLQVRVLDLTDMNLL-SLP----SSIGLLTNLHTLCLYSCILKD--MA-------------VISDLKKLEILCLHGS  146 (259)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~-~lp----~~i~~l~~L~~L~l~~~~~~~--~~-------------~~~~l~~L~~L~l~~~  146 (259)
                       -++++|..+++++|.|. ..|    +.|+..+.|.+|.+.+|.+..  -.             ....-+.|++.....|
T Consensus        89 -lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          89 -LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             -hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence             48999999999999887 333    356788899999999998653  11             2234577999999999


Q ss_pred             CCcccchh-----hccCCcCCEEecCCCCCceeeCCC---------CCCCCCcEEEeeccCCC-----ccCCCCcCCCCC
Q 039152          147 SIYQLPVE-----VGQLTQLRSLDLRHCSNLQVIPLN---------KHLPNLTSLELEVNDAN-----TLPRGGLFLEKP  207 (259)
Q Consensus       147 ~i~~lp~~-----i~~l~~L~~L~l~~~~~~~~lp~~---------~~l~~L~~L~l~~~~~~-----~~p~~~~~l~~L  207 (259)
                      ++..-|..     +.....|+.+.+..|.   .-|.+         ..+.+|+.||+..|.++     .+...+..++.|
T Consensus       168 Rlengs~~~~a~~l~sh~~lk~vki~qNg---Irpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l  244 (388)
T COG5238         168 RLENGSKELSAALLESHENLKEVKIQQNG---IRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL  244 (388)
T ss_pred             hhccCcHHHHHHHHHhhcCceeEEeeecC---cCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence            88755432     4445678888888753   23443         67889999999999875     233345567889


Q ss_pred             CeEEeecc-cccCCcccc-------cccccceeecccc
Q 039152          208 ERIDLDAN-VRLKDQDTV-------QLWGIEELSLAEL  237 (259)
Q Consensus       208 ~~L~l~~~-~~~~~~~~~-------~l~~L~~L~l~~~  237 (259)
                      +.|.+..| ....+...+       ..++|..|...++
T Consensus       245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yn  282 (388)
T COG5238         245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYN  282 (388)
T ss_pred             hhccccchhhccccHHHHHHHhhhhcCCCccccccchh
Confidence            99999988 444442222       1777777777766

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.46  E-value=3.4e-05  Score=61.49  Aligned_cols=58  Identities=29%  Similarity=0.417  Sum_probs=24.7

Q ss_pred             CCCCCcEEEecCC--CCCC--chhhhCCCCCcEEEecCCCCcccc--hhhccCCcCCEEecCCC
Q 039152          112 LLTNLHTLCLYSC--ILKD--MAVISDLKKLEILCLHGSSIYQLP--VEVGQLTQLRSLDLRHC  169 (259)
Q Consensus       112 ~l~~L~~L~l~~~--~~~~--~~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~~  169 (259)
                      .+++|++|.++.|  ++..  +.....+++|+++++++|+++.+.  ..+..+.+|..|++..|
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~  126 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC  126 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence            3445555555555  2222  222223355555555555444210  11333444444444444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.27  E-value=6.4e-05  Score=61.26  Aligned_cols=104  Identities=22%  Similarity=0.235  Sum_probs=68.1

Q ss_pred             CCCccEEEcCCCCCCCCc--hhh-cCCCCCcEEEecCCCCCCc----hhhhCCCCCcEEEecCCCCcccchhh-ccCCcC
Q 039152           90 MLQVRVLDLTDMNLLSLP--SSI-GLLTNLHTLCLYSCILKDM----AVISDLKKLEILCLHGSSIYQLPVEV-GQLTQL  161 (259)
Q Consensus        90 l~~L~~L~l~~~~~~~lp--~~i-~~l~~L~~L~l~~~~~~~~----~~~~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L  161 (259)
                      ...+..+.+.++.+....  ..+ ..+.+++.+++.+|.+++.    .-+.++++|++|+++.|++..--... ..+.+|
T Consensus        44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl  123 (418)
T KOG2982|consen   44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL  123 (418)
T ss_pred             ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence            334446777777776432  223 3567899999999999983    44567999999999999765221111 356688


Q ss_pred             CEEecCCCCCceeeCCC---CCCCCCcEEEeeccCC
Q 039152          162 RSLDLRHCSNLQVIPLN---KHLPNLTSLELEVNDA  194 (259)
Q Consensus       162 ~~L~l~~~~~~~~lp~~---~~l~~L~~L~l~~~~~  194 (259)
                      +.|.+.+ ..+..-...   ..++.++.|+++.|.+
T Consensus       124 ~~lVLNg-T~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  124 RVLVLNG-TGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             EEEEEcC-CCCChhhhhhhhhcchhhhhhhhccchh
Confidence            8888876 322211111   5667777888877743

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.16  E-value=0.0017  Score=46.79  Aligned_cols=105  Identities=14%  Similarity=0.248  Sum_probs=55.8

Q ss_pred             cccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-hc
Q 039152           81 AIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE-VG  156 (259)
Q Consensus        81 ~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i~  156 (259)
                      .++...|.++++|+.+.+.. .+..++. .+..+.+|+.+.+..+ +..  ...+..+.+++.+.+.. .+..++.. +.
T Consensus         2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~   78 (129)
T PF13306_consen    2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS   78 (129)
T ss_dssp             EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred             EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence            35667788888888888875 4555544 4677778888888764 555  34566777788888865 55555544 55


Q ss_pred             cCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeec
Q 039152          157 QLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEV  191 (259)
Q Consensus       157 ~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~  191 (259)
                      .+++++.+.+.. + +..++..  .+. +|+.+.+..
T Consensus        79 ~~~~l~~i~~~~-~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   79 NCTNLKNIDIPS-N-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             T-TTECEEEETT-T--BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccccccCc-c-ccEEchhhhcCC-CceEEEECC
Confidence            577788777764 2 4445444  444 666666543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.12  E-value=0.00025  Score=56.69  Aligned_cols=61  Identities=25%  Similarity=0.327  Sum_probs=29.0

Q ss_pred             CCCCccEEEcCCC--CCC-CCchhhcCCCCCcEEEecCCCCCC---chhhhCCCCCcEEEecCCCCc
Q 039152           89 SMLQVRVLDLTDM--NLL-SLPSSIGLLTNLHTLCLYSCILKD---MAVISDLKKLEILCLHGSSIY  149 (259)
Q Consensus        89 ~l~~L~~L~l~~~--~~~-~lp~~i~~l~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~i~  149 (259)
                      .+++|+.|.++.|  .+. .++...-.+++|++|++++|+++.   ...+..+.+|..|++.+|...
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence            4455555555555  222 232223334555555555555543   233444455555555555433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.90  E-value=4e-05  Score=61.83  Aligned_cols=80  Identities=30%  Similarity=0.448  Sum_probs=55.4

Q ss_pred             CCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCCCCCceeeCCC---CCCCCCcEEE
Q 039152          112 LLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN---KHLPNLTSLE  188 (259)
Q Consensus       112 ~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~---~~l~~L~~L~  188 (259)
                      ++.+.+.|+..+|.+.+++...+++.|++|.|+-|.|+.+. .+..+++|+.|++.. +.+.++...   .++++|+.|-
T Consensus        17 dl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHh
Confidence            45566778888888887777778888888888888887773 366777777777776 344444333   5666666666


Q ss_pred             eeccC
Q 039152          189 LEVND  193 (259)
Q Consensus       189 l~~~~  193 (259)
                      |..|+
T Consensus        95 L~ENP   99 (388)
T KOG2123|consen   95 LDENP   99 (388)
T ss_pred             hccCC
Confidence            65554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.82  E-value=0.00054  Score=33.19  Aligned_cols=21  Identities=29%  Similarity=0.518  Sum_probs=14.8

Q ss_pred             CCcEEEecCCCCcccchhhcc
Q 039152          137 KLEILCLHGSSIYQLPVEVGQ  157 (259)
Q Consensus       137 ~L~~L~l~~~~i~~lp~~i~~  157 (259)
                      +|++|++++|+++.+|+++++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            467777777777777776554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.37  E-value=0.018  Score=41.40  Aligned_cols=56  Identities=13%  Similarity=0.186  Sum_probs=20.6

Q ss_pred             hcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-hccCCcCCEEecC
Q 039152          110 IGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLR  167 (259)
Q Consensus       110 i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~  167 (259)
                      +.++.+|+.+.+.. .+..  ...+..+.+|+.+.+..+ +..++.. +..++.++.+.+.
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence            44445555555543 2333  233444445555555443 4444332 3344345555443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.25  E-value=0.0017  Score=31.43  Aligned_cols=21  Identities=29%  Similarity=0.325  Sum_probs=15.8

Q ss_pred             CCcEEEeeccCCCccCCCCcC
Q 039152          183 NLTSLELEVNDANTLPRGGLF  203 (259)
Q Consensus       183 ~L~~L~l~~~~~~~~p~~~~~  203 (259)
                      +|++|++++|.++.+|..+++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            478888888888888877443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.84  E-value=0.0069  Score=27.20  Aligned_cols=16  Identities=31%  Similarity=0.480  Sum_probs=7.1

Q ss_pred             CCcEEEecCCCCcccc
Q 039152          137 KLEILCLHGSSIYQLP  152 (259)
Q Consensus       137 ~L~~L~l~~~~i~~lp  152 (259)
                      +|++|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4566666666655544

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.73  E-value=0.00039  Score=59.14  Aligned_cols=59  Identities=25%  Similarity=0.210  Sum_probs=27.7

Q ss_pred             CCCCCCcEEEeeccC-CCc--cCCCCcCCCCCCeEEeecccccCCcccc----cccccceeecccc
Q 039152          179 KHLPNLTSLELEVND-ANT--LPRGGLFLEKPERIDLDANVRLKDQDTV----QLWGIEELSLAEL  237 (259)
Q Consensus       179 ~~l~~L~~L~l~~~~-~~~--~p~~~~~l~~L~~L~l~~~~~~~~~~~~----~l~~L~~L~l~~~  237 (259)
                      .+..+|+.|-++.++ ++.  +-..-.+++.|+.+++..+....+.+..    ..+.|+.|.+++|
T Consensus       317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshc  382 (483)
T KOG4341|consen  317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHC  382 (483)
T ss_pred             cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhh
Confidence            444555666555554 221  1111124555666666655333332211    1666666666666

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.46  E-value=0.0094  Score=26.75  Aligned_cols=17  Identities=47%  Similarity=0.810  Sum_probs=8.4

Q ss_pred             CCCcEEEeeccCCCccC
Q 039152          182 PNLTSLELEVNDANTLP  198 (259)
Q Consensus       182 ~~L~~L~l~~~~~~~~p  198 (259)
                      ++|+.|++++|.++++|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            35667777777666655

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.15  E-value=0.0045  Score=54.98  Aligned_cols=108  Identities=26%  Similarity=0.352  Sum_probs=61.5

Q ss_pred             HhCCCCccEEEcCCC-CCCC--CchhhcCCCCCcEEEecCC-C-CCC-----chhhhCCCCCcEEEecCCC-Cccc-chh
Q 039152           87 LRSMLQVRVLDLTDM-NLLS--LPSSIGLLTNLHTLCLYSC-I-LKD-----MAVISDLKKLEILCLHGSS-IYQL-PVE  154 (259)
Q Consensus        87 ~~~l~~L~~L~l~~~-~~~~--lp~~i~~l~~L~~L~l~~~-~-~~~-----~~~~~~l~~L~~L~l~~~~-i~~l-p~~  154 (259)
                      ....+.|+.+.+.++ .+..  +-.....+++|+.|+++++ . ...     ......+.+|+.++++++. +... -..
T Consensus       184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~  263 (482)
T KOG1947|consen  184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA  263 (482)
T ss_pred             HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence            344677777777766 3333  3344556777888888763 2 111     1334445777888887776 4422 112


Q ss_pred             hc-cCCcCCEEecCCCCCceeeCCC---CCCCCCcEEEeeccCC
Q 039152          155 VG-QLTQLRSLDLRHCSNLQVIPLN---KHLPNLTSLELEVNDA  194 (259)
Q Consensus       155 i~-~l~~L~~L~l~~~~~~~~lp~~---~~l~~L~~L~l~~~~~  194 (259)
                      +. .+++|+.|.+..|..+....-.   .++++|++|+++++..
T Consensus       264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            22 3677888877666542111111   6677788888887653

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.53  E-value=0.035  Score=27.81  Aligned_cols=21  Identities=29%  Similarity=0.354  Sum_probs=16.0

Q ss_pred             CCCCcEEEecCCCCcccchhh
Q 039152          135 LKKLEILCLHGSSIYQLPVEV  155 (259)
Q Consensus       135 l~~L~~L~l~~~~i~~lp~~i  155 (259)
                      +++|++|++++|+++.+|.+.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            457788888888888887764

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.53  E-value=0.035  Score=27.81  Aligned_cols=21  Identities=29%  Similarity=0.354  Sum_probs=16.0

Q ss_pred             CCCCcEEEecCCCCcccchhh
Q 039152          135 LKKLEILCLHGSSIYQLPVEV  155 (259)
Q Consensus       135 l~~L~~L~l~~~~i~~lp~~i  155 (259)
                      +++|++|++++|+++.+|.+.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            457788888888888887764

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=94.19  E-value=0.028  Score=48.22  Aligned_cols=78  Identities=21%  Similarity=0.268  Sum_probs=36.3

Q ss_pred             CCCCCCcEEEeeccCC-Cc-----cCCCCcCCCCCCeEEeecccccCCcccc---cccccceeeccccchhhhhhhhhhh
Q 039152          179 KHLPNLTSLELEVNDA-NT-----LPRGGLFLEKPERIDLDANVRLKDQDTV---QLWGIEELSLAELLDHIKNFVNKLV  249 (259)
Q Consensus       179 ~~l~~L~~L~l~~~~~-~~-----~p~~~~~l~~L~~L~l~~~~~~~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~l~  249 (259)
                      .+++.|+.|.++.+.. +.     +......+..|..+.+.++........-   ..++|+.+++-+|....+.....+ 
T Consensus       369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~-  447 (483)
T KOG4341|consen  369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRF-  447 (483)
T ss_pred             cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHH-
Confidence            4555666666655432 21     1222234555566666665444332111   155666666666633333333333 


Q ss_pred             hccccccc
Q 039152          250 KVGSSQLK  257 (259)
Q Consensus       250 ~~~l~~L~  257 (259)
                      ...+|+++
T Consensus       448 ~~~lp~i~  455 (483)
T KOG4341|consen  448 ATHLPNIK  455 (483)
T ss_pred             HhhCccce
Confidence            44555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.00  E-value=0.014  Score=51.72  Aligned_cols=103  Identities=25%  Similarity=0.249  Sum_probs=45.3

Q ss_pred             CCCCcEEEecCC-CCcc--cchhhccCCcCCEEecCCC-CCceeeCCC-----CCCCCCcEEEeeccC-CCc--cCCCCc
Q 039152          135 LKKLEILCLHGS-SIYQ--LPVEVGQLTQLRSLDLRHC-SNLQVIPLN-----KHLPNLTSLELEVND-ANT--LPRGGL  202 (259)
Q Consensus       135 l~~L~~L~l~~~-~i~~--lp~~i~~l~~L~~L~l~~~-~~~~~lp~~-----~~l~~L~~L~l~~~~-~~~--~p~~~~  202 (259)
                      ++.|+.+.+.++ .+..  +-......++|+.|+++.| ......+..     ..+++|+.|+++++. ++.  +.....
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            455555555544 2322  2233445555666655542 111111110     344556666665554 321  111111


Q ss_pred             CCCCCCeEEeecccccCCccccc----ccccceeecccc
Q 039152          203 FLEKPERIDLDANVRLKDQDTVQ----LWGIEELSLAEL  237 (259)
Q Consensus       203 ~l~~L~~L~l~~~~~~~~~~~~~----l~~L~~L~l~~~  237 (259)
                      .+++|+.|.+.+|....+.....    +++|+.|+++.|
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c  305 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC  305 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence            25566666655554332211111    555666666666

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.82  E-value=0.039  Score=27.61  Aligned_cols=22  Identities=45%  Similarity=0.815  Sum_probs=17.6

Q ss_pred             CCCCcEEEeeccCCCccCCCCc
Q 039152          181 LPNLTSLELEVNDANTLPRGGL  202 (259)
Q Consensus       181 l~~L~~L~l~~~~~~~~p~~~~  202 (259)
                      +++|+.|++++|.++.+|...+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4678899999999988887643

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.82  E-value=0.039  Score=27.61  Aligned_cols=22  Identities=45%  Similarity=0.815  Sum_probs=17.6

Q ss_pred             CCCCcEEEeeccCCCccCCCCc
Q 039152          181 LPNLTSLELEVNDANTLPRGGL  202 (259)
Q Consensus       181 l~~L~~L~l~~~~~~~~p~~~~  202 (259)
                      +++|+.|++++|.++.+|...+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4678899999999988887643

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.36  E-value=0.0021  Score=50.85  Aligned_cols=80  Identities=21%  Similarity=0.183  Sum_probs=37.6

Q ss_pred             CCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecC
Q 039152           89 SMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLR  167 (259)
Q Consensus        89 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~  167 (259)
                      .++..++||++.|.+..+...++.+..|..|+++.|.+.- |...+.+..+..+++..|..+..|.+.+..+++++++..
T Consensus        40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhc
Confidence            4445555555555444444444444444444444444444 444444444444444444444444444444444444444


Q ss_pred             C
Q 039152          168 H  168 (259)
Q Consensus       168 ~  168 (259)
                      .
T Consensus       120 ~  120 (326)
T KOG0473|consen  120 K  120 (326)
T ss_pred             c
Confidence            3

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.14  E-value=0.0019  Score=51.15  Aligned_cols=86  Identities=22%  Similarity=0.138  Sum_probs=73.9

Q ss_pred             hhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCCCCCceeeCCC-CCCCCCcE
Q 039152          109 SIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTS  186 (259)
Q Consensus       109 ~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~  186 (259)
                      .|......+.||++.|++.. -..++.++.|..|+++.|.+..+|..++.+..++++++.. ++....|.. +..+++++
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKK  115 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcch
Confidence            46778889999999998777 5677788889999999999999999999999999998876 667778877 88999999


Q ss_pred             EEeeccCCC
Q 039152          187 LELEVNDAN  195 (259)
Q Consensus       187 L~l~~~~~~  195 (259)
                      +++.++.+.
T Consensus       116 ~e~k~~~~~  124 (326)
T KOG0473|consen  116 NEQKKTEFF  124 (326)
T ss_pred             hhhccCcch
Confidence            999888764

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.53  E-value=0.03  Score=43.41  Aligned_cols=31  Identities=13%  Similarity=0.234  Sum_probs=13.5

Q ss_pred             CcEEEecCCCCCC--chhhhCCCCCcEEEecCC
Q 039152          116 LHTLCLYSCILKD--MAVISDLKKLEILCLHGS  146 (259)
Q Consensus       116 L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~  146 (259)
                      ++.++-+++.+..  ...+..++.++.|.+.+|
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c  135 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC  135 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence            3444444444433  344444444444444443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.15  E-value=0.085  Score=41.00  Aligned_cols=77  Identities=22%  Similarity=0.288  Sum_probs=45.4

Q ss_pred             CccEEEcCCCCCCC-CchhhcCCCCCcEEEecCCCCCC---chhhhC-CCCCcEEEecCC-CCccc-chhhccCCcCCEE
Q 039152           92 QVRVLDLTDMNLLS-LPSSIGLLTNLHTLCLYSCILKD---MAVISD-LKKLEILCLHGS-SIYQL-PVEVGQLTQLRSL  164 (259)
Q Consensus        92 ~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~~~~~~---~~~~~~-l~~L~~L~l~~~-~i~~l-p~~i~~l~~L~~L  164 (259)
                      .+..++-+++.+.. =-..+.+++.++.|.+.+|.--+   ...++. .++|+.|++++| +|++- -..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            35566666665542 12335566777777777776333   344444 367888888876 45522 2336667777777


Q ss_pred             ecCC
Q 039152          165 DLRH  168 (259)
Q Consensus       165 ~l~~  168 (259)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            6654

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=84.34  E-value=0.61  Score=23.39  Aligned_cols=19  Identities=32%  Similarity=0.538  Sum_probs=15.6

Q ss_pred             CCCcEEEeeccCCCccCCC
Q 039152          182 PNLTSLELEVNDANTLPRG  200 (259)
Q Consensus       182 ~~L~~L~l~~~~~~~~p~~  200 (259)
                      .+|+.|++++|.++++|+.
T Consensus         2 ~~L~~L~vs~N~Lt~LPeL   20 (26)
T smart00364        2 PSLKELNVSNNQLTSLPEL   20 (26)
T ss_pred             cccceeecCCCccccCccc
Confidence            4688899999999888874

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=81.92  E-value=0.49  Score=22.95  Aligned_cols=14  Identities=36%  Similarity=0.368  Sum_probs=5.7

Q ss_pred             CCCcEEEecCCCCc
Q 039152          136 KKLEILCLHGSSIY  149 (259)
Q Consensus       136 ~~L~~L~l~~~~i~  149 (259)
                      ++|++|++++|++.
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            34555555555443

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	259
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		2e-04
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		3e-04

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 93/195 (47%), Gaps = 25/195 (12%)
Query: 75  RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVI-- 132
           +K+ FF I  N       ++ LDLT  +L  LPS +  L+ L  L L +   +++  I  
Sbjct: 262 QKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA 321
Query: 133 SDLKKLEILCLHGSSIYQLPVEVG---QLTQLRSLDLRH-------CSNLQVIPLNKHLP 182
           S+   L  L + G++  +L +  G    L  LR LDL H       C NLQ+    ++L 
Sbjct: 322 SNFPSLTHLSIKGNT-KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL----RNLS 376
Query: 183 NLTSLELEVNDANTLPRGGLFLEKPERIDLD-ANVRLKDQDTVQLWGIEELSLAELLDHI 241
           +L SL L  N+  +L +   F E P+   LD A  RLK +D    +  + L L ++L   
Sbjct: 377 HLQSLNLSYNEPLSL-KTEAFKECPQLELLDLAFTRLKVKDAQSPF--QNLHLLKVL--- 430
Query: 242 KNFVNKLVKVGSSQL 256
            N  + L+ + S QL
Sbjct: 431 -NLSHSLLDISSEQL 444

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 88  RSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMA-VISDLKKLEILCLHG- 145
           + ++ ++ L L    + SLP+SI  L NL +L + +  L  +   I  L KLE L L G 
Sbjct: 180 QGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239
Query: 146 SSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLE 188
           +++   P   G    L+ L L+ CSNL  +PL+ H   LT LE
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH--RLTQLE 280

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	259
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.9 bits (190), Expect = 1e-16
 Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 12/134 (8%)

Query: 77  NSFFAIPQNLLR-SMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDM-AVISD 134
            +  A    L   +      L+L  + L   P     L++L  + + +  L ++   +  
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQ 125

Query: 135 LKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN----------KHLPNL 184
              LE L L  + +  LP  +  L +LR L +R C  L  +P            + L NL
Sbjct: 126 FAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185

Query: 185 TSLELEVNDANTLP 198
            SL LE     +LP
Sbjct: 186 QSLRLEWTGIRSLP 199

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 72.7 bits (179), Expect = 4e-15
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 4/110 (3%)

Query: 94  RVLDLTDMNLLSLPSSIGLLTNLHTLCLYSC-ILKDM-AVISDLKKLEILCLHG-SSIYQ 150
           + L + +  L +L  +I  L  L  L L  C  L++   +      L+ L L   S++  
Sbjct: 209 KSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268

Query: 151 LPVEVGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDANTLPR 199
           LP+++ +LTQL  LDLR C NL  +P     LP    + +  +    L +
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.4 bits (168), Expect = 1e-13
 Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 17/141 (12%)

Query: 94  RVLDLTDMNLL-SLPSSIG---------LLTNLHTLCLYSCILKDM-AVISDLKKLEILC 142
           R L +     L  LP  +           L NL +L L    ++ + A I++L+ L+ L 
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLK 212

Query: 143 LHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSL-ELEVNDAN---TLP 198
           +  S +  L   +  L +L  LDLR C+ L+  P          L  L + D +   TLP
Sbjct: 213 IRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP--PIFGGRAPLKRLILKDCSNLLTLP 270

Query: 199 RGGLFLEKPERIDLDANVRLK 219
                L + E++DL   V L 
Sbjct: 271 LDIHRLTQLEKLDLRGCVNLS 291

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 7/108 (6%)

Query: 94  RVLDLTDMNLLSLPSSIGLLT--NLHTLCLYSCILKDM-AVISDLKKLEILCLHGSSIYQ 150
           ++   T   L +    +   T      L L S  L         L  L+ + +  + + +
Sbjct: 59  QIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME 118

Query: 151 LPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSL-ELEVNDANTL 197
           LP  + Q   L +L L     L+ +P    + +L  L EL +     L
Sbjct: 119 LPDTMQQFAGLETLTLARN-PLRALP--ASIASLNRLRELSIRACPEL 163

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 68.6 bits (168), Expect = 2e-13
 Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 9/148 (6%)

Query: 75  RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSL--PSSIGLLTNLHTLCLYSCILKDMAVI 132
           R N   +IP      +  +  LDL ++  L      +   L NL  L L  C +KDM  +
Sbjct: 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNL 214

Query: 133 SDLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLEL 189
           + L  LE L + G+   ++       L+ L+ L + +   + +I  N    L +L  L L
Sbjct: 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNL 273

Query: 190 EVNDANTLPRGGLF--LEKPERIDLDAN 215
             N+ ++LP   LF  L     + L  N
Sbjct: 274 AHNNLSSLP-HDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 75  RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDMA--V 131
            +N+   I  +  R +  + VL L   ++  +       L +L+TL L+   L  +    
Sbjct: 83  MENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGA 142

Query: 132 ISDLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLE 188
              L KL  L L  + I  +P     ++  L  LDL     L+ I     + L NL  L 
Sbjct: 143 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN 202

Query: 189 LEVNDANTLP 198
           L + +   +P
Sbjct: 203 LGMCNIKDMP 212

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 7/124 (5%)

Query: 74  GRKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMA--V 131
           G       I +     +  ++ L+L   N+  +P+    L  L  L +      ++    
Sbjct: 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTP-LVGLEELEMSGNHFPEIRPGS 237

Query: 132 ISDLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLE 188
              L  L+ L +  S +  +       L  L  L+L H  NL  +P +    L  L  L 
Sbjct: 238 FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELH 296

Query: 189 LEVN 192
           L  N
Sbjct: 297 LHHN 300

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.5 bits (165), Expect = 4e-13
 Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 9/148 (6%)

Query: 75  RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLS-LPSSI-GLLTNLHTLCLYSCILKDMAVI 132
           R N   +IP      +  +R LDL ++  LS +       L+NL  L L  C L+++  +
Sbjct: 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNL 203

Query: 133 SDLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLEL 189
           + L KL+ L L G+ +  +       L  L+ L +     +QVI  N   +L +L  + L
Sbjct: 204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINL 262

Query: 190 EVNDANTLPRGGLF--LEKPERIDLDAN 215
             N+   LP   LF  L   ERI L  N
Sbjct: 263 AHNNLTLLPH-DLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 9/168 (5%)

Query: 75  RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDMA--V 131
            +N    I  N  + +  + +L L+  ++ ++       L NL+TL L+   L  +    
Sbjct: 72  HENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGA 131

Query: 132 ISDLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLE 188
              L KL+ L L  + I  +P     ++  LR LDL     L  I     + L NL  L 
Sbjct: 132 FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191

Query: 189 LEVNDANTLPRGGLFLEKPERIDLDAN--VRLKDQDTVQLWGIEELSL 234
           L + +   +P     L K + +DL  N    ++      L  +++L +
Sbjct: 192 LAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 7/124 (5%)

Query: 74  GRKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILK--DMAV 131
           G       I +     +  +R L+L   NL  +P+    L  L  L L    L       
Sbjct: 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTP-LIKLDELDLSGNHLSAIRPGS 226

Query: 132 ISDLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLE 188
              L  L+ L +  S I  +       L  L  ++L H  NL ++P +    L +L  + 
Sbjct: 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIH 285

Query: 189 LEVN 192
           L  N
Sbjct: 286 LHHN 289

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.7 bits (156), Expect = 6e-12
 Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 2/106 (1%)

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
           L +++++  L +   N ++  S++  LTNL  L L    + D++ +++L K+  L L  +
Sbjct: 84  LSNLVKLTNLYIGT-NKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGAN 142

Query: 147 SIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVN 192
                   +  +T L  L +     ++ +    +L +L SL L  N
Sbjct: 143 HNLSDLSPLSNMTGLNYLTVTES-KVKDVTPIANLTDLYSLSLNYN 187

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.6 bits (153), Expect = 1e-11
 Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 3/129 (2%)

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
              +  +  L +    + S+   I  LTNL  L L    + D++ +S+L KL  L +  +
Sbjct: 40  QEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTN 98

Query: 147 SIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEK 206
            I  +   +  LT LR L L    N+  I    +L  + SL L  N   +       +  
Sbjct: 99  KITDIS-ALQNLTNLRELYLNED-NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTG 156

Query: 207 PERIDLDAN 215
              + +  +
Sbjct: 157 LNYLTVTES 165

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.2 bits (147), Expect = 9e-11
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 3/112 (2%)

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
              + +     L     ++   +   L ++  L +    +  +  I  L  LE L L+G+
Sbjct: 18  DADLAEGIRAVLQK-ASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGN 76

Query: 147 SIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLP 198
            I  +   +  L +L +L +     +  I   ++L NL  L L  ++ + + 
Sbjct: 77  QITDIS-PLSNLVKLTNLYIGTN-KITDISALQNLTNLRELYLNEDNISDIS 126

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.1 bits (144), Expect = 2e-10
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 2/106 (1%)

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
           L ++ ++  L+L   + LS  S +  +T L+ L +    +KD+  I++L  L  L L+ +
Sbjct: 128 LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYN 187

Query: 147 SIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVN 192
            I  +   +  LT L            + P+   +  L SL++  N
Sbjct: 188 QIEDIS-PLASLTSLHYFTAYVNQITDITPVAN-MTRLNSLKIGNN 231

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.5 bits (132), Expect = 8e-09
 Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 3/107 (2%)

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
           L ++ Q+  L++   N +S  +++  LT L  L + S  + D++V+++L +L  L L+ +
Sbjct: 239 LANLSQLTWLEIGT-NQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNN 297

Query: 147 SIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVN 192
            +    +EV G LT L +L L    ++  I     L  + S +    
Sbjct: 298 QLGNEDMEVIGGLTNLTTLFLSQN-HITDIRPLASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.3 bits (129), Expect = 2e-08
 Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 3/103 (2%)

Query: 96  LDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEV 155
           L      +  +      L       L    + D+    +L+ +  L + G  +  +   +
Sbjct: 5   LATLPAPINQI-FPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQ-GI 62

Query: 156 GQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLP 198
             LT L  L+L     +  I    +L  LT+L +  N    + 
Sbjct: 63  EYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTNKITDIS 104

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.3 bits (103), Expect = 4e-05
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 116 LHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVI 175
             TL      +  +   +DL +     L  +S+  +     +L  +  L +     +  I
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGE-KVASI 59

Query: 176 PLNKHLPNLTSLELEVN 192
              ++L NL  L L  N
Sbjct: 60  QGIEYLTNLEYLNLNGN 76

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.6 bits (152), Expect = 2e-11
 Identities = 21/133 (15%), Positives = 46/133 (34%), Gaps = 4/133 (3%)

Query: 75  RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISD 134
           R      I ++   S+   ++ +LT+  +  +  +I  LT L  +   +           
Sbjct: 410 RNPEMKPIKKDSRISLKDTQIGNLTN-RITFISKAIQRLTKLQIIYFANSPFT--YDNIA 466

Query: 135 LKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVND 193
           +   +    +        +    L  L  ++L +C N+  +P     LP L SL +  N 
Sbjct: 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526

Query: 194 ANTLPRGGLFLEK 206
             +  +      +
Sbjct: 527 GISAAQLKADWTR 539

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 12/113 (10%), Positives = 36/113 (31%), Gaps = 14/113 (12%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLL-SLPSSIGLLTNLHTLCLYSCILKDMAVISDL 135
              +   +    ++  +  ++L +   +  LP  +  L  L +L +              
Sbjct: 477 AKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN----------- 525

Query: 136 KKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLE 188
            +        +   +L  +     +++   + +  NL+  P +  L  +  L 
Sbjct: 526 -RGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLG 576

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.0 bits (135), Expect = 3e-09
 Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 18/144 (12%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPS--------SIGLLTNLHTLCLYSCILKD 128
           N     P  L  +   +  + L++  + S+P         +      L T+ L    L  
Sbjct: 683 NEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742

Query: 129 M---AVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQ------VIPLN- 178
           +      + L  L  + +  +     P +    +QL++  +RH  + +        P   
Sbjct: 743 LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802

Query: 179 KHLPNLTSLELEVNDANTLPRGGL 202
              P+L  L++  ND   +     
Sbjct: 803 TTCPSLIQLQIGSNDIRKVDEKLT 826

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.0 bits (135), Expect = 3e-09
 Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 4/107 (3%)

Query: 85  NLLRSMLQVRVLDLTDMNLLSLPSSIGL--LTNLHTLCLYSCILKDMAVISDLKKLEILC 142
           +   +  ++++  +   NL   P+S  L  +  L  L      ++ +       KL  L 
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLK 601

Query: 143 LHGSSIYQLPVEVGQ-LTQLRSLDLRHCSNLQVIPLNKHLPNLTSLE 188
           L  + I ++P +      Q+  L   H   L+ IP   +  ++  + 
Sbjct: 602 LDYNQIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMG 647

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.5 bits (118), Expect = 4e-07
 Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 21/162 (12%)

Query: 77  NSFFAIPQNL-LRSMLQVRVLDLTDMNLLSLPSSIGL------LTNLHTLCLYSCILKDM 129
           N    IP     +S+  +  +D +   + S   +I          N  T+ L    ++  
Sbjct: 629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF 688

Query: 130 --AVISDLKKLEILCLHG--------SSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN- 178
              + +    +  + L          +S+            L ++DLR    L  +  + 
Sbjct: 689 PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDF 747

Query: 179 --KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRL 218
               LP L+++++  N  ++ P   L   + +   +      
Sbjct: 748 RATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDA 789

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 20/139 (14%), Positives = 43/139 (30%), Gaps = 13/139 (9%)

Query: 77  NSFFAIPQNLLRSMLQV-RVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDM------ 129
           N   ++  +   + L     +D++     S P+     + L    +      +       
Sbjct: 738 NKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797

Query: 130 --AVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSL 187
               I+    L  L +  + I ++  ++    QL  LD+        I +    P + + 
Sbjct: 798 WPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIADN-PNISIDVTSVCPYIEAG 854

Query: 188 ELE-VNDANTLPRGGLFLE 205
               + D     RG   L 
Sbjct: 855 MYVLLYDKTQDIRGCDALG 873

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 6/129 (4%)

Query: 70  WSDEGRKNSFFAIPQNLLRSMLQVRVLDLTDMNLL-SLPSSIGLLTNLHTLCLYSCILKD 128
           W+     + +   P   L +  +V  L L        +P +IG LT L  L   +     
Sbjct: 302 WNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV 361

Query: 129 MAVISDLKKLEI----LCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNL 184
              +   ++L         H   ++   + +    +L   DL   +  +  P  K +   
Sbjct: 362 SGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR-NPEMKPIKKD 420

Query: 185 TSLELEVND 193
           + + L+   
Sbjct: 421 SRISLKDTQ 429

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 2/119 (1%)

Query: 132 ISDLKKLEILCLHGSSIY-QLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELE 190
           + +  ++  L L G     ++P  +GQLT+L+ L     S      L         +  E
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 191 VNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLD-HIKNFVNKL 248
                 +    +FL+  +R++L   ++       ++  I++ S   L D  I N  N++
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 61.3 bits (149), Expect = 3e-11
 Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 6/132 (4%)

Query: 89  SMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMA--VISDLKKLEILCLHGS 146
           ++  +  LDL+   L SLP     L  L  L +    L  +    +  L +L+ L L G+
Sbjct: 75  TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134

Query: 147 SIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRGGLF 203
            +  LP  +     +L  L L   +NL  +P      L NL +L L+ N   T+P+G   
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSL-ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193

Query: 204 LEKPERIDLDAN 215
                   L  N
Sbjct: 194 SHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.9 bits (148), Expect = 3e-11
 Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 10/144 (6%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDMAVISDL 135
            +  A+P +L +      +L L++  L +   +     T L  L L    L  + V   L
Sbjct: 20  RNLTALPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL 76

Query: 136 KKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVND 193
             L  L L  + +  LP+    L  L  LD+     L  +PL   + L  L  L L+ N+
Sbjct: 77  PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNE 135

Query: 194 ANTLPRGGLF--LEKPERIDLDAN 215
             TLP  GL     K E++ L  N
Sbjct: 136 LKTLP-PGLLTPTPKLEKLSLANN 158

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 61.7 bits (150), Expect = 4e-11
 Identities = 31/145 (21%), Positives = 61/145 (42%), Gaps = 6/145 (4%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDMA--VIS 133
           N    +   + + +  ++ L++ D +L+ +       L +L  L L  C L  +    +S
Sbjct: 114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173

Query: 134 DLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEV 191
            L  L +L L   +I  +      +L +L+ L++ H   L  +  N  +  NLTSL +  
Sbjct: 174 HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233

Query: 192 NDANTLPRGGL-FLEKPERIDLDAN 215
            +   +P   +  L     ++L  N
Sbjct: 234 CNLTAVPYLAVRHLVYLRFLNLSYN 258

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 33/149 (22%), Positives = 61/149 (40%), Gaps = 10/149 (6%)

Query: 75  RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGL-LTNLHTLCLYSCILKDMA--V 131
           R  +  AI     + + +++VL+++    L   +   L   NL +L +  C L  +    
Sbjct: 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA 243

Query: 132 ISDLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLE 188
           +  L  L  L L  + I  +   +  +L +L+ + L     L V+     + L  L  L 
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLN 302

Query: 189 LEVNDANTLPRGGLF--LEKPERIDLDAN 215
           +  N   TL    +F  +   E + LD+N
Sbjct: 303 VSGNQLTTLE-ESVFHSVGNLETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 41/191 (21%), Positives = 69/191 (36%), Gaps = 17/191 (8%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDMAVI--S 133
           N   A+      ++  +R L L    L  +P  +   L+NL  L +    +  +      
Sbjct: 66  NIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ 125

Query: 134 DLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELE 190
           DL  L+ L +  + +  +       L  L  L L  C NL  IP     HL  L  L L 
Sbjct: 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLR 184

Query: 191 VNDANTLPRGGL-FLEKPERIDLDANVRLKDQDTVQLWGIEELSLAEL-LDHIKNFVNKL 248
             + N +       L + + +++     L       L+G   L+L  L + H       L
Sbjct: 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG---LNLTSLSITH-----CNL 236

Query: 249 VKVGSSQLKYL 259
             V    +++L
Sbjct: 237 TAVPYLAVRHL 247

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 11/131 (8%)

Query: 92  QVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILK--DMAVISDLKKLEILCLHGSSIY 149
           Q R +       +++P   G+ T    L L    +K  +    +    LE L L+ + + 
Sbjct: 12  QDRAVLCHRKRFVAVPE--GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS 69

Query: 150 QLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRGGLF--L 204
            +       L  LR+L LR    L++IPL     L NLT L++  N    L    +F  L
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLD-YMFQDL 127

Query: 205 EKPERIDLDAN 215
              + +++  N
Sbjct: 128 YNLKSLEVGDN 138

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.6 bits (150), Expect = 4e-11
 Identities = 17/142 (11%), Positives = 48/142 (33%), Gaps = 7/142 (4%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCIL--KDMAVISD 134
           +      +   R  L+   +     N+  +  ++  LT L    + +     +++    +
Sbjct: 169 DPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWE 228

Query: 135 LKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVND 193
            +  E    + +      ++   L  L  +++ +C NL  +P   K LP +  + +  N 
Sbjct: 229 NENSEYAQQYKT----EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284

Query: 194 ANTLPRGGLFLEKPERIDLDAN 215
             +  +     +      +   
Sbjct: 285 GISGEQLKDDWQALADAPVGEK 306

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 21/152 (13%), Positives = 46/152 (30%), Gaps = 17/152 (11%)

Query: 102 NLLSLPSSIGLLTNLHTLCLYSCILKDM---AVISDLKKLEILCLHGSSIYQLPVEVGQL 158
           +     +   +   +  + +    LK       +  +KKL +L    + +       G  
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSE 352

Query: 159 TQLRSLDLRHCSNLQVIP--LNKHLPNLTSLELEVNDANTLPRGGLF--LEKPERIDLDA 214
            +L SL+L +   +  IP         + +L    N    +P       +     ID   
Sbjct: 353 IKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSY 411

Query: 215 NVRLKDQDTVQLWGIEELSLAELLDHIKNFVN 246
           N         ++  ++  +   L       +N
Sbjct: 412 N---------EIGSVDGKNFDPLDPTPFKGIN 434

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 27/164 (16%), Positives = 49/164 (29%), Gaps = 23/164 (14%)

Query: 77  NSFFAIPQNL-LRSMLQVRVLDL--------TDMNLLSLPSSIGLLTNLHTLCLYSCILK 127
           N    IP     +S+  +  +D            N   L  +     N+ ++ L +  + 
Sbjct: 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446

Query: 128 --DMAVISDLKKLEILCLHG--------SSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPL 177
                + S    L  + L G        +S+            L S+DLR    L  +  
Sbjct: 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSD 505

Query: 178 N---KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRL 218
           +     LP L  ++L  N  +  P   L     +   +      
Sbjct: 506 DFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDA 549

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 25/157 (15%), Positives = 51/157 (32%), Gaps = 20/157 (12%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTD--------MNLLSLPSSIGLLTNLHTLCLYSCILKD 128
           N     P+ L  +   +  ++L           +L     +      L ++ L    L  
Sbjct: 443 NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502

Query: 129 M---AVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQ------VIPLN- 178
           +      + L  L  + L  +S  + P +    + L+   +R+  + Q        P   
Sbjct: 503 LSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI 562

Query: 179 KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDAN 215
              P+LT L++  ND   +            +D+  N
Sbjct: 563 TLCPSLTQLQIGSNDIRKVNEK--ITPNISVLDIKDN 597

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 16/140 (11%), Positives = 44/140 (31%), Gaps = 15/140 (10%)

Query: 77  NSFFAIPQNLLRSMLQV-RVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDM------ 129
           N    +  +   + L     +DL+  +    P+     + L    + +            
Sbjct: 498 NKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557

Query: 130 --AVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSL 187
               I+    L  L +  + I ++  ++     +  LD++   N+ +     ++      
Sbjct: 558 WPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDL--SYVCPYIEA 613

Query: 188 ELEVNDANTLP--RGGLFLE 205
            + +   +     RG   L+
Sbjct: 614 GMYMLFYDKTQDIRGCDALD 633

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 31/192 (16%), Positives = 59/192 (30%), Gaps = 16/192 (8%)

Query: 70  WSDEGRKNSFFAIPQNLLRSMLQVRVLDLTDMNLL-SLPSSIGLLTNLHTLCLYSCILKD 128
           W+     + + A P   L S  +V  L L        +P +IG LT L  L L S   K 
Sbjct: 60  WNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKV 119

Query: 129 MAVISDLKKLEILC-----------LHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIP- 176
              +   K +                  + +   P E    + L    +      + I  
Sbjct: 120 NERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRE--DFSDLIKDCINSDPQQKSIKK 177

Query: 177 LNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAE 236
            ++     T +    N+   + +  + L K  +  +  +     ++  + W  E    A+
Sbjct: 178 SSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQ 236

Query: 237 LLDHIKNFVNKL 248
                    + L
Sbjct: 237 QYKTEDLKWDNL 248

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 18/129 (13%), Positives = 40/129 (31%), Gaps = 15/129 (11%)

Query: 94  RVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILK---DMAVISDLKKLEILCLHG---- 145
             L+L    +  +P++  G    +  L      LK   ++     +  +  +        
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG 415

Query: 146 ----SSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPR 199
                +   L     +   + S++L +   +   P         L+S+ L  N    +P+
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPK 474

Query: 200 GGLFLEKPE 208
             L  E   
Sbjct: 475 NSLKDENEN 483

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.7 bits (148), Expect = 6e-11
 Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 3/112 (2%)

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
              + QV  L       +     +  L NL  +   +  L D+  + +L KL  + ++ +
Sbjct: 42  QTDLDQVTTLQADR-LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN 100

Query: 147 SIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLP 198
            I  +   +  LT L  L L +   +  I   K+L NL  LEL  N  + + 
Sbjct: 101 QIADIT-PLANLTNLTGLTLFNN-QITDIDPLKNLTNLNRLELSSNTISDIS 150

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.4 bits (142), Expect = 4e-10
 Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 3/106 (2%)

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
             ++ +     L   N+    S    L  + TL      +K +  +  L  L  +    +
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN 78

Query: 147 SIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVN 192
            +  +   +  LT+L  + + +     + PL   L NLT L L  N
Sbjct: 79  QLTDIT-PLKNLTKLVDILMNNNQIADITPLAN-LTNLTGLTLFNN 122

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 3/116 (2%)

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
           +  +  +  ++ ++ N L+  + +  LT L  + + +  + D+  +++L  L  L L  +
Sbjct: 64  VEYLNNLTQINFSN-NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 122

Query: 147 SIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGL 202
            I  +   +  LT L  L+L     +  I     L +L  L       +  P   L
Sbjct: 123 QITDID-PLKNLTNLNRLELSSN-TISDISALSGLTSLQQLSFGNQVTDLKPLANL 176

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.6 bits (132), Expect = 7e-09
 Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 4/129 (3%)

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
           L  +  +  L  T+ N +S  + +G+LTNL  L L    LKD+  ++ L  L  L L  +
Sbjct: 195 LAKLTNLESLIATN-NQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN 253

Query: 147 SIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEK 206
            I  L   +  LT+L  L L     +  I     L  LT+LEL  N    +      L+ 
Sbjct: 254 QISNLA-PLSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQLEDIS-PISNLKN 310

Query: 207 PERIDLDAN 215
              + L  N
Sbjct: 311 LTYLTLYFN 319

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.6 bits (132), Expect = 8e-09
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 4/106 (3%)

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
           L  +  ++ L     N ++    +  LT L  L + S  + D++V++ L  LE L    +
Sbjct: 152 LSGLTSLQQLSFG--NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN 209

Query: 147 SIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVN 192
            I  +   +G LT L  L L     L+ I     L NLT L+L  N
Sbjct: 210 QISDIT-PLGILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLANN 253

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 3/129 (2%)

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
           L  +  +  L+L + N L   S I  L NL  L LY   + D++ +S L KL+ L  + +
Sbjct: 283 LAGLTALTNLELNE-NQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN 341

Query: 147 SIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEK 206
            +  +   +  LT +  L   H   +  +    +L  +T L L        P        
Sbjct: 342 KVSDVS-SLANLTNINWLSAGHN-QISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVS 399

Query: 207 PERIDLDAN 215
                 +  
Sbjct: 400 IPNTVKNVT 408

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 2/106 (1%)

Query: 93  VRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLP 152
           +    +T    ++   +   L       L    + D    +DL ++  L      I  + 
Sbjct: 3   LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID 62

Query: 153 VEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLP 198
             V  L  L  ++  +   L  I   K+L  L  + +  N    + 
Sbjct: 63  -GVEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQIADIT 106

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 19/112 (16%), Positives = 44/112 (39%), Gaps = 1/112 (0%)

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
           + S+ +++ L   + N +S  SS+  LTN++ L      + D+  +++L ++  L L+  
Sbjct: 327 VSSLTKLQRLFFYN-NKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 385

Query: 147 SIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLP 198
           +    PV       + +        L          + T  ++  N  +   
Sbjct: 386 AWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTN 437

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 4/111 (3%)

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
           + ++  +  L L   N +S  S +  LT L  L  Y+  + D++ +++L  +  L    +
Sbjct: 305 ISNLKNLTYLTLYF-NNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHN 363

Query: 147 SIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTL 197
            I  L   +  LT++  L L         P+N +  N++      N    L
Sbjct: 364 QISDLT-PLANLTRITQLGLNDQ-AWTNAPVN-YKANVSIPNTVKNVTGAL 411

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 60.0 bits (146), Expect = 9e-11
 Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 7/145 (4%)

Query: 78  SFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILK---DMAVISD 134
           SF             ++ LDL+   ++++ S+   L  L  L      LK   + +V   
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124

Query: 135 LKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEV 191
           L+ L  L +  +        +   L+ L  L +   S  +    +    L NLT L+L  
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 192 NDANTLPRGGLF-LEKPERIDLDAN 215
                L       L   + +++  N
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHN 209

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 28/142 (19%), Positives = 57/142 (40%), Gaps = 10/142 (7%)

Query: 83  PQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDM---AVISDLKKL 138
             ++  S+  +  LD++  +     + I   L++L  L +     ++     + ++L+ L
Sbjct: 118 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177

Query: 139 EILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDAN 195
             L L    + QL       L+ L+ L++ H  N   +     K L +L  L+  +N   
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIM 236

Query: 196 TLPRGGL--FLEKPERIDLDAN 215
           T  +  L  F      ++L  N
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQN 258

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 60.2 bits (146), Expect = 1e-10
 Identities = 37/146 (25%), Positives = 58/146 (39%), Gaps = 15/146 (10%)

Query: 81  AIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGL--LTNLHTLCLYSCILK--DMAVISDLK 136
            +PQ+L        +LDL+  NL  L +      LTNLH+L L    L          + 
Sbjct: 32  NVPQSLPSYT---ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP 88

Query: 137 KLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVND 193
            L  L L  + ++ L   +   L  L  L L +  ++ V+  N  + +  L  L L  N 
Sbjct: 89  NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQ 147

Query: 194 ANTLPRGGLF----LEKPERIDLDAN 215
            +  P   +     L K   +DL +N
Sbjct: 148 ISRFPVELIKDGNKLPKLMLLDLSSN 173

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 23/142 (16%), Positives = 44/142 (30%), Gaps = 4/142 (2%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNL--LSLPSSIGLLTNLHTLCLYSCILKDMAVISD 134
           N    +         +V+ LDL    +  ++          L  L L    + D+     
Sbjct: 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189

Query: 135 LKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVND 193
             KL+ L L  + +  +  E      +  + LR+   L +I    +   NL   +L  N 
Sbjct: 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248

Query: 194 ANTLPRGGLFLEKPERIDLDAN 215
            +       F +      +   
Sbjct: 249 FHCGTLRDFFSKNQRVQTVAKQ 270

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 27/143 (18%), Positives = 54/143 (37%), Gaps = 8/143 (5%)

Query: 75  RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLP-SSIGLLTNLHTLCLYSCILKDMAVIS 133
             +S      +L +S   V+ LDL+   L  +  + +   T L  L L S +L +   + 
Sbjct: 18  TDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLE 77

Query: 134 DLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVND 193
            L  L  L L+ + + +L         + +L   +  N+  +  ++      ++ L  N 
Sbjct: 78  SLSTLRTLDLNNNYVQELL----VGPSIETLHAANN-NISRVSCSR-GQGKKNIYLANNK 131

Query: 194 ANTLPRGGLF-LEKPERIDLDAN 215
              L         + + +DL  N
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLN 154

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 8/120 (6%)

Query: 86  LLRSMLQVRVLDLTDMNLLSLPSSIG-LLTNLHTLCLYSCILKDM--AVISDLKKLEILC 142
           + ++  + ++  +TD +L    +S+     N+  L L    L  +  A ++   KLE+L 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 143 LHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGL 202
           L  + +Y+   ++  L+ LR+LDL +   +Q +      P++ +L    N+ + +     
Sbjct: 65  LSSNVLYETL-DLESLSTLRTLDLNNN-YVQELL---VGPSIETLHAANNNISRVSCSRG 119

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 4/99 (4%)

Query: 105 SLPSSIGLLTNLHTLCLYSCILKDM--AVISDLKKLEILCLHGSSIYQLPVEV-GQLTQL 161
           ++              +    LK    ++      ++ L L G+ + Q+        T+L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 162 RSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRG 200
             L+L     L      + L  L +L+L  N    L  G
Sbjct: 61  ELLNLSSN-VLYETLDLESLSTLRTLDLNNNYVQELLVG 98

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 5/106 (4%)

Query: 90  MLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIY 149
           M  +  + L ++N+  L + I    N+  L + +    +   IS L  LE L + G  + 
Sbjct: 43  MNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVT 101

Query: 150 QLPVE-VGQLTQLRSLDLRHC--SNLQVIPLNKHLPNLTSLELEVN 192
              +  +  LT L  LD+ H    +  +  +N  LP + S++L  N
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKIN-TLPKVNSIDLSYN 146

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 6e-09
 Identities = 22/109 (20%), Positives = 47/109 (43%), Gaps = 4/109 (3%)

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAV--ISDLKKLEILCLH 144
           +     ++ L + +    +  + I  L+NL  L +    +    +  +S L  L +L + 
Sbjct: 62  IEYAHNIKDLTINN-IHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120

Query: 145 GSSIYQLPVE-VGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVN 192
            S+     +  +  L ++ S+DL +   +  I   K LP L SL ++ +
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD 169

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 5e-06
 Identities = 20/115 (17%), Positives = 46/115 (40%), Gaps = 5/115 (4%)

Query: 109 SIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRH 168
           +   + +L  + L +  + D+  I     ++ L ++          +  L+ L  L +  
Sbjct: 39  TEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMG 97

Query: 169 C--SNLQVIPLNKHLPNLTSLELEVNDANTLPRGGL-FLEKPERIDLDANVRLKD 220
              ++ ++  L+  L +LT L++  +  +      +  L K   IDL  N  + D
Sbjct: 98  KDVTSDKIPNLS-GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 4/109 (3%)

Query: 87  LRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKDMAV--ISDLKKLEILCL 143
           +  +  +  L +   ++ S    ++  LT+L  L +      D  +  I+ L K+  + L
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143

Query: 144 HGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVN 192
             +      + +  L +L+SL+++         + +  P L  L     
Sbjct: 144 SYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGI-EDFPKLNQLYAFSQ 191

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.1 bits (141), Expect = 3e-10
 Identities = 39/147 (26%), Positives = 55/147 (37%), Gaps = 12/147 (8%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDMA--VIS 133
            +F+ IP NL  S    + LDL+   L  L S        L  L L  C ++ +      
Sbjct: 17  LNFYKIPDNLPFS---TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73

Query: 134 DLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELE 190
            L  L  L L G+ I  L +     L+ L+ L      NL  +      HL  L  L + 
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVA 132

Query: 191 VNDANTLPRGGLF--LEKPERIDLDAN 215
            N   +      F  L   E +DL +N
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSN 159

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 32/145 (22%), Positives = 52/145 (35%), Gaps = 10/145 (6%)

Query: 81  AIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYS---CILKDMAVISDLK 136
           ++       +  ++ L   + NL SL +   G L  L  L +        K     S+L 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 137 KLEILCLHGSSIYQLPVEV-GQLTQLRSLDLR---HCSNLQVIPLN-KHLPNLTSLELEV 191
            LE L L  + I  +       L Q+  L+L      + +  I         L  L L+ 
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDT 209

Query: 192 NDANTLPRGGL-FLEKPERIDLDAN 215
           N   ++P G    L   ++I L  N
Sbjct: 210 NQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 8/131 (6%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDMA--VIS 133
           N    +      S  +++VLDL+   + ++       L++L TL L    ++ +A    S
Sbjct: 38  NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97

Query: 134 DLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLNK---HLPNLTSLEL 189
            L  L+ L    +++  L     G L  L+ L++ H + +Q   L +   +L NL  L+L
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDL 156

Query: 190 EVNDANTLPRG 200
             N   ++   
Sbjct: 157 SSNKIQSIYCT 167

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 21/127 (16%), Positives = 48/127 (37%), Gaps = 13/127 (10%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGL---LTNLHTLCLYSCILKDM--AV 131
            +  ++    +  +  ++ L++    + S          LTNL  L L S  ++ +    
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIYCTD 168

Query: 132 ISDLKKLEI----LCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLT 185
           +  L ++ +    L L  + +  +     +  +L+ L L     L+ +P      L +L 
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQ 227

Query: 186 SLELEVN 192
            + L  N
Sbjct: 228 KIWLHTN 234

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 10/149 (6%)

Query: 76  KNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDM--AVIS 133
           K+ FF I  N       ++ LDLT  +L  LPS +  L+ L  L L +   +++     S
Sbjct: 263 KHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISAS 322

Query: 134 DLKKLEILCLHGSSIYQL--PVEVGQLTQLRSLDLRHCSNLQVIPLN----KHLPNLTSL 187
           +   L  L + G++         +  L  LR LDL H  +++         ++L +L SL
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSL 381

Query: 188 ELEVNDANTLPRGGL-FLEKPERIDLDAN 215
            L  N+  +L         + E +DL   
Sbjct: 382 NLSYNEPLSLKTEAFKECPQLELLDLAFT 410

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 31/149 (20%), Positives = 54/149 (36%), Gaps = 11/149 (7%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNL--LSLPSSIGLLTNLHTLCLYSCILKDMA--VI 132
           N   ++     +   Q+ +LDL    L      S    L  L  L L   +L   +  + 
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445

Query: 133 SDLKKLEILCLHGSSIYQLPVEV----GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTS 186
             L  L+ L L G+   +  ++       L +L  L L  C +L  I  +    L  +  
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNH 504

Query: 187 LELEVNDANTLPRGGLFLEKPERIDLDAN 215
           ++L  N   +     L   K   ++L +N
Sbjct: 505 VDLSHNRLTSSSIEALSHLKGIYLNLASN 533

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 9/147 (6%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDM--AVIS 133
              + I ++  +S  ++  L LT   L+ +  +       L  L      +  +    + 
Sbjct: 67  CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH 126

Query: 134 DLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELE 190
           + K LE L L  + I  + +       +L+ LD ++   +  +       L   T+L L 
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLN 185

Query: 191 V--NDANTLPRGGLFLEKPERIDLDAN 215
           +  ND   +  G       + ++    
Sbjct: 186 LNGNDIAGIEPGAFDSAVFQSLNFGGT 212

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 11/150 (7%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLP-SSIGLLTNLHTLCLYSCILKD--MAVIS 133
               +I    L +   +  L L   ++ S+          L  L   +  +       +S
Sbjct: 115 TGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS 174

Query: 134 DLKKLEILCLHGS--SIYQLPVEVGQLTQLRSLDLRHCSNLQVIPL---NKHLPNLTSLE 188
            L++   L L+ +   I  +          +SL+     NL VI     N  + +L    
Sbjct: 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234

Query: 189 LEVNDANTLPRG---GLFLEKPERIDLDAN 215
            E  D   +      GL     E I+L  +
Sbjct: 235 FEDMDDEDISPAVFEGLCEMSVESINLQKH 264

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 8/169 (4%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILK--DMAVIS 133
           N    + +  L     ++ L      + S+    +     L +L L S  +    +    
Sbjct: 91  NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF 150

Query: 134 DLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSN-LQVIPLNK-HLPNLTSLELE 190
             +KL++L    ++I+ L  E    L Q  +L L    N +  I           SL   
Sbjct: 151 PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFG 210

Query: 191 VNDANTLPRGGLFLEKPERIDLD--ANVRLKDQDTVQLWGIEELSLAEL 237
                 +   GL     + + L    ++  +D       G+ E+S+  +
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 31/146 (21%), Positives = 53/146 (36%), Gaps = 8/146 (5%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKDMA--VIS 133
           N    I       ++ +  LDLT   +  +   +      L TL L +  L  MA   +S
Sbjct: 43  NVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS 102

Query: 134 DLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELE 190
             K L+ L    + I  +          L SL L    ++  I L        L  L+ +
Sbjct: 103 GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQ 161

Query: 191 VNDANTLPRGGL-FLEKPERIDLDAN 215
            N  + L +  +  L++   + L+ N
Sbjct: 162 NNAIHYLSKEDMSSLQQATNLSLNLN 187

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 11/150 (7%)

Query: 94  RVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDM--AVISDLKKLEILCLHGSSIYQL 151
           +  +  ++ L  +P    L  +   L     +L  +     S L  L  L L    IY +
Sbjct: 15  KTYNCENLGLNEIPG--TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 152 PVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRGGL-FLEKP 207
             +      +L +L L     L  +          L  L       +++    L   +  
Sbjct: 73  HEDTFQSQHRLDTLVLTANP-LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 208 ERIDLDAN--VRLKDQDTVQLWGIEELSLA 235
           E + L +N    +K         ++ L   
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQ 161

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 44/147 (29%), Positives = 65/147 (44%), Gaps = 10/147 (6%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDM--AVIS 133
           N   ++P      + ++R+L L D  L +LP+ I   L NL TL +    L+ +   V  
Sbjct: 47  NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFD 106

Query: 134 DLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELE 190
            L  L  L L  + +  LP  V   LT+L  L L +   LQ +P      L +L  L L 
Sbjct: 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLY 165

Query: 191 VNDANTLPRGGLF--LEKPERIDLDAN 215
            N    +P  G F  L + + + LD N
Sbjct: 166 NNQLKRVPE-GAFDKLTELKTLKLDNN 191

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.8 bits (130), Expect = 9e-09
 Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 8/146 (5%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDM--AVIS 133
           N    +P  + + +  +  L +TD  L +LP  +   L NL  L L    LK +   V  
Sbjct: 71  NKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD 130

Query: 134 DLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELE 190
            L KL  L L  + +  LP  V  +LT L+ L L + + L+ +P      L  L +L+L+
Sbjct: 131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL-YNNQLKRVPEGAFDKLTELKTLKLD 189

Query: 191 VNDANTLPRGGL-FLEKPERIDLDAN 215
            N    +P G    LEK + + L  N
Sbjct: 190 NNQLKRVPEGAFDSLEKLKMLQLQEN 215

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.5 bits (142), Expect = 5e-10
 Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 11/146 (7%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKDM--AVIS 133
                +P +L  +   + VL+LT   L  L  ++    + L +L +    +  +   +  
Sbjct: 14  LKLTQVPDDLPTN---ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ 70

Query: 134 DLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELE 190
            L  L++L L  + + QL  +     T L  L L    ++Q I  N      NL +L+L 
Sbjct: 71  KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLS 129

Query: 191 VNDANTLPRGGLF-LEKPERIDLDAN 215
            N  ++   G    LE  + + L  N
Sbjct: 130 HNGLSSTKLGTQVQLENLQELLLSNN 155

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 10/148 (6%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLP-SSIGLLTNLHTLCLYSCILKDM--AVIS 133
           N+   +   L + +  ++VL+L    L  L   +    TNL  L L S  ++ +      
Sbjct: 59  NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118

Query: 134 DLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPL----NKHLPNLTSLE 188
             K L  L L  + +    +    QL  L+ L L +   +Q +           +L  LE
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLE 177

Query: 189 LEVNDANTLPRGGLF-LEKPERIDLDAN 215
           L  N       G    + +   + L+  
Sbjct: 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNV 205

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.3 bits (126), Expect = 5e-08
 Identities = 34/148 (22%), Positives = 52/148 (35%), Gaps = 10/148 (6%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKDMA--VIS 133
           N    +P        Q+  LD+    +  L P     L  L  L L    L  ++    +
Sbjct: 35  NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 94

Query: 134 DLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELE 190
               L  L L  +SI ++      +   L +LDL H   L    L     L NL  L L 
Sbjct: 95  FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLS 153

Query: 191 VNDANTLPRGGLFLEKP---ERIDLDAN 215
            N    L    L +      ++++L +N
Sbjct: 154 NNKIQALKSEELDIFANSSLKKLELSSN 181

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.9 bits (125), Expect = 7e-08
 Identities = 31/152 (20%), Positives = 50/152 (32%), Gaps = 13/152 (8%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSC----ILKDMAV 131
           NS   I  N       +  LDL+   L S    +   L NL  L L +     +  +   
Sbjct: 107 NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD 166

Query: 132 ISDLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIP----LNKHLPNLTS 186
           I     L+ L L  + I +        + +L  L L +      +     L     ++ +
Sbjct: 167 IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN 226

Query: 187 LELEVNDANTLPRG---GLFLEKPERIDLDAN 215
           L L  +  +T       GL       +DL  N
Sbjct: 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 38/185 (20%), Positives = 73/185 (39%), Gaps = 27/185 (14%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGL---LTNLHTLCLYSCILKDM--AV 131
           N +  + +N    +  ++ L L  + L ++ SS      L NL  L L +  + ++   +
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499

Query: 132 ISDLKKLEILCLHGSSIYQLPVEV---------GQLTQLRSLDLRHCSNLQVIPLN--KH 180
           +  L+KLEIL L  +++ +L               L+ L  L+L        IP+   K 
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKD 558

Query: 181 LPNLTSLELEVNDANTLPRGGLF-LEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLD 239
           L  L  ++L +N+ NTLP          + ++L  N          +  +E+        
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN---------LITSVEKKVFGPAFR 609

Query: 240 HIKNF 244
           ++   
Sbjct: 610 NLTEL 614

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 33/196 (16%), Positives = 62/196 (31%), Gaps = 20/196 (10%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKD--MAVIS 133
           N    +          +  L L   ++  +  +      NL TL L    L    +    
Sbjct: 83  NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142

Query: 134 DLKKLEILCLHG---SSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLE 188
            L+ L+ L L      ++    +++   + L+ L+L     ++         +  L  L 
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLF 201

Query: 189 LEVNDANTLPRGGLFLEKP----ERIDLDANVRLKDQDTVQLWGIEELSLAEL-LDHIKN 243
           L            L LE        + L  + +L         G++  +L  L L +   
Sbjct: 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNS-QLSTTSNTTFLGLKWTNLTMLDLSY--- 257

Query: 244 FVNKLVKVGSSQLKYL 259
             N L  VG+    +L
Sbjct: 258 --NNLNVVGNDSFAWL 271

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.1 bits (110), Expect = 5e-06
 Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 17/136 (12%)

Query: 81  AIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKDM----AVISDL 135
            +     R +  +  + L+    L L  +S  L+ +L  L L    LK++    +    L
Sbjct: 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479

Query: 136 KKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN----------KHLPNL 184
           + L IL L  ++I  +  ++   L +L  LDL+H  NL  +  +          K L +L
Sbjct: 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHL 538

Query: 185 TSLELEVNDANTLPRG 200
             L LE N  + +P  
Sbjct: 539 HILNLESNGFDEIPVE 554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 25/130 (19%), Positives = 43/130 (33%), Gaps = 13/130 (10%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILK-------- 127
           N+   +  +    + Q+    L   N+  L   S+  L N+  L L     K        
Sbjct: 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317

Query: 128 ---DMAVISDLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLNKHLPN 183
              D      LK LE L +  + I  +   +   L  L+ L L +         N+   +
Sbjct: 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS 377

Query: 184 LTSLELEVND 193
           L    L + +
Sbjct: 378 LAHSPLHILN 387

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.5 bits (139), Expect = 9e-10
 Identities = 30/190 (15%), Positives = 60/190 (31%), Gaps = 8/190 (4%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNL--LSLPSSIGLLTNLHTLCLYSCILKDMAVISD 134
           N    +         +V+ LDL    +  ++          L  L L    + D+     
Sbjct: 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189

Query: 135 LKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVN- 192
             KL+ L L  + +  +  E      +  + LR+   L +I    +   NL   +L  N 
Sbjct: 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248

Query: 193 -DANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELL--DHIKNFVNKLV 249
               TL       ++ + +      +L  Q+  +               D    F ++L+
Sbjct: 249 FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLI 308

Query: 250 KVGSSQLKYL 259
            +   +   L
Sbjct: 309 ALKRKEHALL 318

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 8/143 (5%)

Query: 75  RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKDMAVIS 133
             +S      +L +S   V+ LDL+   L  +  + +   T L  L L S +L +   + 
Sbjct: 18  TDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLE 77

Query: 134 DLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVND 193
            L  L  L L+ + + +L         + +L   +  N+  +  +       ++ L  N 
Sbjct: 78  SLSTLRTLDLNNNYVQELL----VGPSIETLHAANN-NISRVSCS-RGQGKKNIYLANNK 131

Query: 194 ANTLPRGGLF-LEKPERIDLDAN 215
              L         + + +DL  N
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLN 154

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.8 bits (119), Expect = 3e-07
 Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 8/120 (6%)

Query: 86  LLRSMLQVRVLDLTDMNLLSLPSSIG-LLTNLHTLCLYSCILKDM--AVISDLKKLEILC 142
           + ++  + ++  +TD +L    +S+     N+  L L    L  +  A ++   KLE+L 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 143 LHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGL 202
           L  + +Y+   ++  L+ LR+LDL +   +Q +      P++ +L    N+ + +     
Sbjct: 65  LSSNVLYETL-DLESLSTLRTLDLNNN-YVQELL---VGPSIETLHAANNNISRVSCSRG 119

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 33/141 (23%), Positives = 52/141 (36%), Gaps = 8/141 (5%)

Query: 82  IPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDMA--VISDLKKL 138
           +       + ++  L L    L  L   +   L  L  L L    L+ +      DL  L
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155

Query: 139 EILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDAN 195
             L LHG+ I  +P      L  L  L L     +  +  +  + L  L +L L  N+ +
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLS 214

Query: 196 TLPRGGLF-LEKPERIDLDAN 215
            LP   L  L   + + L+ N
Sbjct: 215 ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 11/150 (7%)

Query: 75  RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYS-CILKDMA-- 130
             N    +P    R+   + +L L    L  + ++    L  L  L L     L+ +   
Sbjct: 40  HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA 99

Query: 131 VISDLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSL 187
               L +L  L L    + +L   +   L  L+ L L+    LQ +P +  + L NLT L
Sbjct: 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHL 158

Query: 188 ELEVNDANTLPRGGLF--LEKPERIDLDAN 215
            L  N  +++P    F  L   +R+ L  N
Sbjct: 159 FLHGNRISSVPE-RAFRGLHSLDRLLLHQN 187

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 30/122 (24%), Positives = 45/122 (36%), Gaps = 7/122 (5%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDMA--VIS 133
                +   L R +  ++ L L D  L +LP      L NL  L L+   +  +      
Sbjct: 115 CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174

Query: 134 DLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELE 190
            L  L+ L LH + +  +       L +L +L L    NL  +P      L  L  L L 
Sbjct: 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLN 233

Query: 191 VN 192
            N
Sbjct: 234 DN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 10/127 (7%)

Query: 96  LDLTDMNLLSLPSSIGLLTNLHTLCLYSCILK--DMAVISDLKKLEILCLHGSSIYQLPV 153
                  L ++P   G+      + L+   +     A     + L IL LH + + ++  
Sbjct: 16  TSCPQQGLQAVPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73

Query: 154 EV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRGGLF--LEKPE 208
                L  L  LDL   + L+ +       L  L +L L+      L   GLF  L   +
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP-GLFRGLAALQ 132

Query: 209 RIDLDAN 215
            + L  N
Sbjct: 133 YLYLQDN 139

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.7 bits (136), Expect = 2e-09
 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 3/106 (2%)

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
             +  +    +L     ++   +   L ++  +   +  +K +  I  L  +  L L+G+
Sbjct: 17  DDAFAETIKDNLKK-KSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN 75

Query: 147 SIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVN 192
            +  +   +  L  L  L L       +  L K L  L SL LE N
Sbjct: 76  KLTDIK-PLTNLKNLGWLFLDENKIKDLSSL-KDLKKLKSLSLEHN 119

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.3 bits (135), Expect = 3e-09
 Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 3/106 (2%)

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
           ++ +  V  L L    L  +   +  L NL  L L    +KD++ + DLKKL+ L L  +
Sbjct: 61  IQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHN 119

Query: 147 SIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVN 192
            I  +   +  L QL SL L +     +  L   L  L +L LE N
Sbjct: 120 GISDING-LVHLPQLESLYLGNNKITDITVL-SRLTKLDTLSLEDN 163

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 39.3 bits (91), Expect = 8e-04
 Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 126 LKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLT 185
           +K +       +     L   S+    V   +L  +  +   +  +++ +   ++LPN+T
Sbjct: 11  IKQIFPDDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNS-DIKSVQGIQYLPNVT 68

Query: 186 SLELEVN 192
            L L  N
Sbjct: 69  KLFLNGN 75

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 11/148 (7%)

Query: 75  RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDMA--V 131
           R      IP NL  +   +  + L    +  +P         L  + L +  + ++A   
Sbjct: 19  RGKGLTEIPTNLPET---ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA 75

Query: 132 ISDLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLE 188
              L+ L  L L+G+ I +LP  +   L  L+ L L + + +  + ++  + L NL  L 
Sbjct: 76  FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL-NANKINCLRVDAFQDLHNLNLLS 134

Query: 189 LEVNDANTLPRGGL-FLEKPERIDLDAN 215
           L  N   T+ +G    L   + + L  N
Sbjct: 135 LYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 42/194 (21%), Positives = 68/194 (35%), Gaps = 12/194 (6%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDMA--VIS 133
                I     +S+  +  L LT   + SL       L++L  L      L  +    I 
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121

Query: 134 DLKKLEILCLHGSSIYQLPV--EVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLT---- 185
            LK L+ L +  + I    +      LT L  LDL     +Q I     + L  +     
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNL 180

Query: 186 SLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFV 245
           SL+L +N  N +  G     +  ++ L  N    +     + G+  L +  L+       
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 246 NKLVKVGSSQLKYL 259
             L K   S L+ L
Sbjct: 241 GNLEKFDKSALEGL 254

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 5/116 (4%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKDMA--VIS 133
           N    +      S  +++VLDL+   + ++   +   L++L TL L    ++ +A    S
Sbjct: 38  NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97

Query: 134 DLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLE 188
            L  L+ L    +++  L     G L  L+ L++ H   +Q   L ++  NLT+LE
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLE 152

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 29/150 (19%), Positives = 46/150 (30%), Gaps = 30/150 (20%)

Query: 95  VLDLTDMNLLSLPSSI----------------------GLLTNLHTLCLYSCILKDM--A 130
                ++N   +P ++                           L  L L  C ++ +   
Sbjct: 11  TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 131 VISDLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSL 187
               L  L  L L G+ I  L +     L+ L+ L      NL  +      HL  L  L
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKEL 129

Query: 188 ELEVNDANTLPRGGLF--LEKPERIDLDAN 215
            +  N   +      F  L   E +DL +N
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 32/169 (18%), Positives = 55/169 (32%), Gaps = 31/169 (18%)

Query: 78  SFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDM---AVISD 134
           SF             ++ LDL+   ++++ S+   L  L  L      LK M   +V   
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419

Query: 135 LKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRH--------------CSNLQVIPLN- 178
           L+ L  L +  +        +   L+ L  L +                  NL  + L+ 
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 179 -----------KHLPNLTSLELEVNDANTLPRGGL-FLEKPERIDLDAN 215
                        L +L  L +  N   ++P G    L   ++I L  N
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 26/145 (17%), Positives = 46/145 (31%), Gaps = 11/145 (7%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLK 136
            +   +         Q   L+L +      P+    L +L  L   S    +     DL 
Sbjct: 292 VTIERVKDFSYNFGWQH--LELVNCKFGQFPTLK--LKSLKRLTFTSNKGGNAFSEVDLP 347

Query: 137 KLEILCLHGSSIYQLPV---EVGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVN 192
            LE L L  + +             T L+ LDL     +  +  N   L  L  L+ + +
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHS 406

Query: 193 DANTLPRGGLFLEKP--ERIDLDAN 215
           +   +    +FL       +D+   
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHT 431

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 5/116 (4%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKDMA--VIS 133
           N    +      +  +++ LDL+   + ++   +   L +L  L L    ++  +    S
Sbjct: 42  NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS 101

Query: 134 DLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLE 188
            L  LE L    + +  L     GQL  L+ L++ H   +    L  +  NLT+L 
Sbjct: 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLV 156

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 39/194 (20%), Positives = 66/194 (34%), Gaps = 12/194 (6%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKDM--AVIS 133
                I       +  +  L LT   + S  P S   LT+L  L      L  +    I 
Sbjct: 66  CEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG 125

Query: 134 DLKKLEILCLHGSSIY--QLPVEVGQLTQLRSLDLRHCSNLQVIP------LNKHLPNLT 185
            L  L+ L +  + I+  +LP     LT L  +DL +   +Q I       L ++     
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNL 184

Query: 186 SLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFV 245
           SL++ +N  + +        K   + L  N    +     L  +  L +  L+       
Sbjct: 185 SLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244

Query: 246 NKLVKVGSSQLKYL 259
             L     S ++ L
Sbjct: 245 RNLEIFEPSIMEGL 258

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 25/165 (15%), Positives = 44/165 (26%), Gaps = 25/165 (15%)

Query: 76  KNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGL--------------------LTN 115
             + F+        +  V  + L  +++  L                          L  
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF 329

Query: 116 LHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQ---LTQLRSLDLRHCSNL 172
           L +L L             L  L  L L  +++               LR LDL     +
Sbjct: 330 LKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389

Query: 173 QVIPLNKHLPNLTSLELEVNDANTLPRGGLF--LEKPERIDLDAN 215
            +      L  L  L+ + +    +     F  LEK   +D+   
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 6/127 (4%)

Query: 77  NSFFAIPQNLLRSM--LQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKDMAVIS 133
            +      +++  +  + +    LT  N  S        L N+  + L    +K +  + 
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVP 304

Query: 134 DLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVND 193
              K + L +    + Q P     L  L+SL L       +      LP+L+ L+L  N 
Sbjct: 305 KHFKWQSLSIIRCQLKQFP--TLDLPFLKSLTLTMN-KGSISFKKVALPSLSYLDLSRNA 361

Query: 194 ANTLPRG 200
            +     
Sbjct: 362 LSFSGCC 368

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.9 bits (135), Expect = 3e-09
 Identities = 30/148 (20%), Positives = 63/148 (42%), Gaps = 15/148 (10%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLS-----LPSSIGLLTNLHTLCLYSCILKDMAV 131
           +  F +P +  + +  +  LDL++ NL+        +  G   +L TL L    L+ M  
Sbjct: 320 SKVFLVPCSFSQHLKSLEFLDLSE-NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378

Query: 132 ISD----LKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSL 187
             +    LK L  L +  ++ + +P       ++R L+L     ++V+        L  L
Sbjct: 379 TGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST-GIRVVK-TCIPQTLEVL 436

Query: 188 ELEVNDANTLPRGGLFLEKPERIDLDAN 215
           ++  N+ ++     LFL + + + +  N
Sbjct: 437 DVSNNNLDSFS---LFLPRLQELYISRN 461

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.5 bits (134), Expect = 5e-09
 Identities = 30/132 (22%), Positives = 48/132 (36%), Gaps = 10/132 (7%)

Query: 95  VLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDM--AVISDLKKLEILCLHGSSIYQLP 152
           V D    +  S+PS  GL   + +L L    +  +    +     L++L L  S I  + 
Sbjct: 9   VCDGRSRSFTSIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66

Query: 153 VEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRGGLF--LEKP 207
            +    L  L  LDL    +L  +  +    L +L  L L  N   TL    LF  L   
Sbjct: 67  GDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125

Query: 208 ERIDLDANVRLK 219
           + + +       
Sbjct: 126 QTLRIGNVETFS 137

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 30/147 (20%), Positives = 51/147 (34%), Gaps = 8/147 (5%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDM--AVIS 133
           N    I    LR+   ++VL L    + ++       L +L  L L    L  +  +   
Sbjct: 36  NKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG 95

Query: 134 DLKKLEILCLHGSSIYQLPV--EVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLEL 189
            L  L+ L L G+    L V      LT L++L + +      I       L +L  LE+
Sbjct: 96  PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155

Query: 190 EVNDANTLPRGGL-FLEKPERIDLDAN 215
           +           L  +     + L  +
Sbjct: 156 KALSLRNYQSQSLKSIRDIHHLTLHLS 182

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 25/132 (18%), Positives = 55/132 (41%), Gaps = 6/132 (4%)

Query: 85  NLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLH 144
            +L ++  +  LD++      +P S      +  L L S  ++ +      + LE+L + 
Sbjct: 381 EILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKT-CIPQTLEVLDVS 439

Query: 145 GSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGL-F 203
            +++    +    L +L+ L +     L+ +P     P L  +++  N   ++P G    
Sbjct: 440 NNNLDSFSLF---LPRLQELYISRN-KLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDR 495

Query: 204 LEKPERIDLDAN 215
           L   ++I L  N
Sbjct: 496 LTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 24/150 (16%), Positives = 50/150 (33%), Gaps = 13/150 (8%)

Query: 76  KNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIG-LLTNLHTL-----CLYSCILKDM 129
           +   F     +   + +V+ + + +  +  +P S    L +L  L      +    LK+ 
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354

Query: 130 AVISDLKKLEILCLHGSSIYQLPVEVG---QLTQLRSLDLRHCSNLQVIPLN-KHLPNLT 185
           A       L+ L L  + +  +         L  L SLD+        +P + +    + 
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMR 413

Query: 186 SLELEVNDANTLPRGGLFLEKPERIDLDAN 215
            L L       +       +  E +D+  N
Sbjct: 414 FLNLSSTGIRVVKTCI--PQTLEVLDVSNN 441

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 21/137 (15%), Positives = 47/137 (34%), Gaps = 7/137 (5%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSS--IGLLTNLHTLCLYSCIL---KDMAV 131
           N   ++  +    +  ++ L+L      +L  +     LTNL TL + +           
Sbjct: 84  NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143

Query: 132 ISDLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIP-LNKHLPNLTSLEL 189
            + L  L  L +   S+     +    +  +  L L    +  ++      L ++  LEL
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203

Query: 190 EVNDANTLPRGGLFLEK 206
              +        L +++
Sbjct: 204 RDTNLARFQFSPLPVDE 220

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.1 bits (133), Expect = 5e-09
 Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 7/132 (5%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDMA--VIS 133
           ++   +P  LL S  QV +L+L D+ +  + +        +  L +    ++ +   V  
Sbjct: 55  STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114

Query: 134 DLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELE 190
           ++  L +L L  + +  LP  +     +L +L + +  NL+ I  +  +   +L +L+L 
Sbjct: 115 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLS 173

Query: 191 VNDANTLPRGGL 202
            N    +    +
Sbjct: 174 SNRLTHVDLSLI 185

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 5/131 (3%)

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
           L   + V  LD +  ++  +     +   L  L L    L D A + +   L  + L  +
Sbjct: 201 LAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN 258

Query: 147 SIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDANTLPRGGLFL 204
            + ++      ++ +L  L + + + L  + L  + +P L  L+L  N    + R     
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQF 317

Query: 205 EKPERIDLDAN 215
           ++ E + LD N
Sbjct: 318 DRLENLYLDHN 328

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 4/118 (3%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDM-AVISDL 135
           N    I  +    M ++  L +++  L++L      +  L  L L    L  +       
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQF 317

Query: 136 KKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVND 193
            +LE L L  +SI  L   +     L++L L H ++     L     N+    ++  D
Sbjct: 318 DRLENLYLDHNSIVTLK--LSTHHTLKNLTLSH-NDWDCNSLRALFRNVARPAVDDAD 372

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 28/160 (17%), Positives = 59/160 (36%), Gaps = 21/160 (13%)

Query: 75  RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDMAVIS 133
            +N   ++P+ +  +  ++  L +++ NL  +        T+L  L L S  L  +  +S
Sbjct: 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LS 183

Query: 134 DLKKLEILCLHGSSIYQLP-----------------VEVGQLTQLRSLDLRHCSNLQVIP 176
            +  L    +  + +  L                  V      +L  L L+H  NL    
Sbjct: 184 LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN-NLTDTA 242

Query: 177 LNKHLPNLTSLELEVNDANTLPRGGLF-LEKPERIDLDAN 215
              + P L  ++L  N+   +       +++ ER+ +  N
Sbjct: 243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 4/109 (3%)

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDM-AVISDLKKLEILCLH 144
           L +   +  +DL+   L  +       +  L  L + +  L  +      +  L++L L 
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS 303

Query: 145 GSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVND 193
            + +  +     Q  +L +L L H  ++  + L+     L +L L  ND
Sbjct: 304 HNHLLHVERNQPQFDRLENLYLDHN-SIVTLKLS-THHTLKNLTLSHND 350

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 9/131 (6%)

Query: 75  RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILK--DMAV 131
             N+   +P ++ +++  + VL L   +L SLP  I      L TL + +  L+  +   
Sbjct: 101 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT 160

Query: 132 ISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEV 191
                 L+ L L  + +  +   +  +  L   ++ +   L  +        +  L+   
Sbjct: 161 FQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYN-LLSTLA---IPIAVEELDASH 214

Query: 192 NDANTLPRGGL 202
           N  N +     
Sbjct: 215 NSINVVRGPVN 225

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.5 bits (129), Expect = 7e-09
 Identities = 24/143 (16%), Positives = 52/143 (36%), Gaps = 12/143 (8%)

Query: 81  AIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGL--LTNLHTLCLYSCILKDMA--VISDLK 136
            IP+++ +       L L +     L ++     L  L  +   +  + D+         
Sbjct: 25  KIPEHIPQY---TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS 81

Query: 137 KLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVND 193
            +  + L  + +  +  ++   L  L++L LR    +  +  +    L ++  L L  N 
Sbjct: 82  GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQ 140

Query: 194 ANTLPRGGL-FLEKPERIDLDAN 215
             T+  G    L     ++L AN
Sbjct: 141 ITTVAPGAFDTLHSLSTLNLLAN 163

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.8 bits (132), Expect = 8e-09
 Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 8/133 (6%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDM--AVIS 133
              F++   +  ++  ++VL+L    +  +       L NL  L L   +L ++  +   
Sbjct: 276 GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335

Query: 134 DLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVN 192
            L K+  + L  + I  +  +    L +L++LDLR    L  I     +P++  + L  N
Sbjct: 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN-ALTTIH---FIPSIPDIFLSGN 391

Query: 193 DANTLPRGGLFLE 205
              TLP+  L   
Sbjct: 392 KLVTLPKINLTAN 404

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.8 bits (132), Expect = 8e-09
 Identities = 42/181 (23%), Positives = 66/181 (36%), Gaps = 17/181 (9%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILK---DMAVI 132
            +   +PQ L         L L+   + ++ +S    L  L  L L S       D    
Sbjct: 14  CNLTQVPQVLN----TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69

Query: 133 SDLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN----KHLPNLTSL 187
            +L  L IL L  S IY L  +    L  L  L L  C  L    L     ++L  LT L
Sbjct: 70  RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRL 128

Query: 188 ELEVNDANTLPRGGLF--LEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFV 245
           +L  N   +L     F  L   + ID  +N ++      +L  ++  +L+       +  
Sbjct: 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPLQGKTLSFFSLAANSLY 187

Query: 246 N 246
           +
Sbjct: 188 S 188

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.6 bits (116), Expect = 8e-07
 Identities = 29/138 (21%), Positives = 45/138 (32%), Gaps = 15/138 (10%)

Query: 91  LQVRVLDLTDMNLLSLP--SSIGLLTNLHTLCLYSCILKDM---AVISDLKKLEILCLHG 145
           L   ++ L++  L +L     +  + +L  L L              S+   LE L L  
Sbjct: 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460

Query: 146 SSIYQLPVEV------GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTL 197
           + +               L+ L+ L L H   L  +P     HL  L  L L  N    L
Sbjct: 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSNRLTVL 519

Query: 198 PRGGLFLEKPERIDLDAN 215
                     E +D+  N
Sbjct: 520 S-HNDLPANLEILDISRN 536

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.1 bits (112), Expect = 3e-06
 Identities = 29/167 (17%), Positives = 57/167 (34%), Gaps = 28/167 (16%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGL---------LTNLHTLCLYSCIL- 126
           N    I     + + +++ LDL D  L ++     +         L  L  + L + ++ 
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIH 407

Query: 127 ---------KDMAVISDLKKLEILCLHGSSIYQLPVEV--GQLTQLRSLDLRHCS----N 171
                      +  +  +  L+IL L+ +       +    +   L  L L         
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAW 467

Query: 172 LQVIPLN--KHLPNLTSLELEVNDANTLPRGGL-FLEKPERIDLDAN 215
              +  +  + L +L  L L  N  N+LP G    L     + L++N
Sbjct: 468 ETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN 514

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.5 bits (131), Expect = 1e-08
 Identities = 29/150 (19%), Positives = 48/150 (32%), Gaps = 21/150 (14%)

Query: 71  SDEGRKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMA 130
              GR      +   L        VL++ +  L +LP  +    ++ TL +    L    
Sbjct: 23  ESRGRAAVVQKMRACLNN---GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-- 75

Query: 131 VISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRH--------------CSNLQVIP 176
           + +   +L  L + G+ +  LPV    L +L                         Q+  
Sbjct: 76  LPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTS 135

Query: 177 LNKHLPNLTSLELEVNDANTLPRGGLFLEK 206
           L    P L  L +  N   +LP     L K
Sbjct: 136 LPVLPPGLQELSVSDNQLASLPALPSELCK 165

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 15/122 (12%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLK 136
           N   ++P         ++ L ++D  L SLP+    L  L     Y+  L   ++     
Sbjct: 131 NQLTSLP----VLPPGLQELSVSDNQLASLPALPSELCKLW---AYNNQLT--SLPMLPS 181

Query: 137 KLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANT 196
            L+ L +  + +  LP    +L +L + + R  S      L      L  L +  N   +
Sbjct: 182 GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTS------LPALPSGLKELIVSGNRLTS 235

Query: 197 LP 198
           LP
Sbjct: 236 LP 237

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.5 bits (118), Expect = 4e-07
 Identities = 26/163 (15%), Positives = 52/163 (31%), Gaps = 8/163 (4%)

Query: 94  RVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPV 153
           + L ++   L SLP     L  L    +    L  +        L  L ++ + + +LP 
Sbjct: 224 KELIVSGNRLTSLPVLPSELKELM---VSGNRLTSLP--MLPSGLLSLSVYRNQLTRLPE 278

Query: 154 EVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPER-IDL 212
            +  L+   +++L     L    L      +TS              G    +  R + L
Sbjct: 279 SLIHLSSETTVNLEGN-PLSERTLQAL-REITSAPGYSGPIIRFDMAGASAPRETRALHL 336

Query: 213 DANVRLKDQDTVQLWGIEELSLAELLDHIKNFVNKLVKVGSSQ 255
            A   L      +    +   +    D+   F   L ++  ++
Sbjct: 337 AAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETE 379

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 53.7 bits (130), Expect = 1e-08
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 16/120 (13%)

Query: 85  NLLRSMLQVRVLDLTDMNL---LSLPSSIGLLTNLHTLCLYSC------ILKDMAVISDL 135
           +      +V  LDL+ +NL     +PSS+  L  L+ L +         I      I+ L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA---IAKL 100

Query: 136 KKLEILCLHGSSIY-QLPVEVGQLTQLRSLDLRHCSNLQ-VIPLN-KHLPNLTSLELEVN 192
            +L  L +  +++   +P  + Q+  L +LD  +   L   +P +   LPNL  +  + N
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGN 159

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 48.3 bits (116), Expect = 8e-07
 Identities = 31/117 (26%), Positives = 44/117 (37%), Gaps = 9/117 (7%)

Query: 82  IPQNLLRSMLQVRVLDLTDMNLLS--LPSSIGLLTNLHTLCLYSCILK-DMAVISDLKKL 138
           IP     + L +  +DL   N+L        G   N   + L    L  D+  +   K L
Sbjct: 190 IPPTF--ANLNLAFVDL-SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246

Query: 139 EILCLHGSSIY-QLPVEVGQLTQLRSLDLRHCSNLQ-VIPLNKHLPNLTSLELEVND 193
             L L  + IY  LP  + QL  L SL++   +NL   IP   +L          N 
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF-NNLCGEIPQGGNLQRFDVSAYANNK 302

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.2 bits (130), Expect = 1e-08
 Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 7/132 (5%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDMA--VIS 133
           ++   +P  LL S  QV +L+L D+ +  + +        +  L +    ++ +   V  
Sbjct: 61  STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 120

Query: 134 DLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELE 190
           ++  L +L L  + +  LP  +     +L +L + +  NL+ I  +  +   +L +L+L 
Sbjct: 121 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLS 179

Query: 191 VNDANTLPRGGL 202
            N    +    +
Sbjct: 180 SNRLTHVDLSLI 191

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 8/129 (6%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMA--VISD 134
           NS   +   +   +    +L L   NL      +     L  + L    L+ +       
Sbjct: 221 NSINVVRGPVNVEL---TILKLQHNNLTDTAWLLNY-PGLVEVDLSYNELEKIMYHPFVK 276

Query: 135 LKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVND 193
           +++LE L +  + +  L +    +  L+ LDL H  +L  +  N      L +L L+ N 
Sbjct: 277 MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS 335

Query: 194 ANTLPRGGL 202
             TL     
Sbjct: 336 IVTLKLSTH 344

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 28/160 (17%), Positives = 59/160 (36%), Gaps = 21/160 (13%)

Query: 75  RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDMAVIS 133
            +N   ++P+ +  +  ++  L +++ NL  +        T+L  L L S  L  +  +S
Sbjct: 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LS 189

Query: 134 DLKKLEILCLHGSSIYQLP-----------------VEVGQLTQLRSLDLRHCSNLQVIP 176
            +  L    +  + +  L                  V      +L  L L+H  NL    
Sbjct: 190 LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN-NLTDTA 248

Query: 177 LNKHLPNLTSLELEVNDANTLPRGGLF-LEKPERIDLDAN 215
              + P L  ++L  N+   +       +++ ER+ +  N
Sbjct: 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 22/129 (17%), Positives = 48/129 (37%), Gaps = 9/129 (6%)

Query: 75  RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILK--DMAV 131
             N+   +P ++ +++  + VL L   +L SLP  I      L TL + +  L+  +   
Sbjct: 107 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT 166

Query: 132 ISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEV 191
                 L+ L L  + +  +   +  +  L   ++ +   L  +        +  L+   
Sbjct: 167 FQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYN-LLSTLA---IPIAVEELDASH 220

Query: 192 NDANTLPRG 200
           N  N +   
Sbjct: 221 NSINVVRGP 229

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.0 bits (129), Expect = 2e-08
 Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 8/108 (7%)

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
           L  +L V  LDL+   L +LP ++  L  L  L      L+++  +++L +L+ L L  +
Sbjct: 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN 518

Query: 147 SIYQLP--VEVGQLTQLRSLDLRHCSNLQVIP-----LNKHLPNLTSL 187
            + Q      +    +L  L+L+  ++L         L + LP+++S+
Sbjct: 519 RLQQSAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 48.6 bits (115), Expect = 8e-07
 Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 5/133 (3%)

Query: 63  ELVSGWEWSDEGRKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLY 122
            +        +  ++ F      L      VRVL L   +L  L   +  L  +  L L 
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLS 471

Query: 123 SCILKDM-AVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHC--SNLQVIPLNK 179
              L+ +   ++ L+ LE+L    +++  +   V  L +L+ L L +        I    
Sbjct: 472 HNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLV 530

Query: 180 HLPNLTSLELEVN 192
             P L  L L+ N
Sbjct: 531 SCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 39.4 bits (91), Expect = 8e-04
 Identities = 26/149 (17%), Positives = 54/149 (36%), Gaps = 13/149 (8%)

Query: 97  DLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCL------HGSSIYQ 150
           +L ++   +    + ++  +  L       + +   S LK ++ +            + +
Sbjct: 373 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE 432

Query: 151 LPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERI 210
             V   +   +R L L H  +L V+   + L  +T L+L  N    LP     L   E +
Sbjct: 433 NSVLKMEYADVRVLHLAHK-DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVL 491

Query: 211 DLDANVRLKDQDTVQLWGIEELSLAELLD 239
               N  L++     + G+  L   + L 
Sbjct: 492 QASDN-ALEN-----VDGVANLPRLQELL 514

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 12/194 (6%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKDM--AVIS 133
                I     +S+  +  L LT   + SL   +   L++L  L      L  +    I 
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121

Query: 134 DLKKLEILCLHGSSI--YQLPVEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLT---- 185
            LK L+ L +  + I  ++LP     LT L  LDL     +Q I     + L  +     
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNL 180

Query: 186 SLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFV 245
           SL+L +N  N +  G     +  ++ L  N    +     + G+  L +  L+       
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 246 NKLVKVGSSQLKYL 259
             L K   S L+ L
Sbjct: 241 GNLEKFDKSALEGL 254

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.3 bits (126), Expect = 5e-08
 Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 5/116 (4%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKDMA--VIS 133
           N    +      S  +++VLDL+   + ++   +   L++L TL L    ++ +A    S
Sbjct: 38  NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97

Query: 134 DLKKLEILCLHGSSIYQL-PVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLE 188
            L  L+ L    +++  L    +G L  L+ L++ H   +Q   L ++  NLT+LE
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLE 152

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 6/120 (5%)

Query: 76  KNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDM---AVI 132
             SF             ++ LDL+   ++++ S+   L  L  L      LK M   +V 
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 133 SDLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLEL 189
             L+ L  L +  +        +   L+ L  L +   S  +    +    L NLT L+L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 6/106 (5%)

Query: 91  LQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDM--AVISDLKKLEILCLHGSSI 148
           +        ++N   +P    L  +   L L    L+ +         +L++L L    I
Sbjct: 7   VPNITYQCMELNFYKIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI 64

Query: 149 YQL-PVEVGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVN 192
             +       L+ L +L L       +       L +L  L     
Sbjct: 65  QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 7/120 (5%)

Query: 77  NSFFAIPQNLLRSM--LQVRVLDLTDMNLL--SLPSSIGLLTNLHTLCLYSCILKDMAVI 132
            +     ++ L  +  L +    L  ++     +      LTN+ +  L S  ++ +   
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300

Query: 133 SDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVN 192
           S     + L L      Q P    +L  L+ L                LP+L  L+L  N
Sbjct: 301 SYNFGWQHLELVNCKFGQFP--TLKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRN 357

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 17/112 (15%), Positives = 41/112 (36%), Gaps = 3/112 (2%)

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
             ++     +     + ++   +   L  + TL  +   +  +  +  L  L  L L  +
Sbjct: 15  DPALANAIKIAAGK-SNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN 73

Query: 147 SIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLP 198
            I  L   +  LT++  L+L     L+ +     L ++ +L+L       + 
Sbjct: 74  QITDLA-PLKNLTKITELELSGN-PLKNVSAIAGLQSIKTLDLTSTQITDVT 123

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 3/106 (2%)

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
           L+++ ++  L+L+  N L   S+I  L ++ TL L S  + D+  ++ L  L++L L  +
Sbjct: 81  LKNLTKITELELSG-NPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 147 SIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVN 192
            I  +   +  LT L+ L + +   +  +    +L  LT+L+ + N
Sbjct: 140 QITNIS-PLAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKADDN 183

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.6 bits (126), Expect = 4e-08
 Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 9/126 (7%)

Query: 95  VLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDM--AVISDLKKLEILCLHGSSIYQLP 152
           ++D +   L+ +P    L      L +    + ++  + I  L KL IL +  + I  L 
Sbjct: 4   LVDRSKNGLIHVPK--DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 153 VEV-GQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLF--LEKPER 209
           + V     +L  LDL H   L  I  +    NL  L+L  N  + LP    F  + + + 
Sbjct: 62  ISVFKFNQELEYLDLSHN-KLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119

Query: 210 IDLDAN 215
           + L   
Sbjct: 120 LGLSTT 125

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.8 bits (124), Expect = 6e-08
 Identities = 30/146 (20%), Positives = 58/146 (39%), Gaps = 8/146 (5%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDMAVISD- 134
           +    +       +     LD ++  L        G LT L TL L    LK+++ I++ 
Sbjct: 310 SGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM 369

Query: 135 ---LKKLEILCLHGSSI-YQLPVEV-GQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLEL 189
              +K L+ L +  +S+ Y            L SL++     L         P +  L+L
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI-LTDTIFRCLPPRIKVLDL 428

Query: 190 EVNDANTLPRGGLFLEKPERIDLDAN 215
             N   ++P+  + LE  + +++ +N
Sbjct: 429 HSNKIKSIPKQVVKLEALQELNVASN 454

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.3 bits (115), Expect = 9e-07
 Identities = 26/147 (17%), Positives = 47/147 (31%), Gaps = 10/147 (6%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGL---LTNLHTLCLYSCILKDMA--- 130
           N            + ++  L L    L  L     +   + +L  L +    +       
Sbjct: 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393

Query: 131 VISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLEL 189
             S  K L  L +  + +           +++ LDL     ++ IP     L  L  L +
Sbjct: 394 DCSWTKSLLSLNMSSNILTDTIFRCL-PPRIKVLDLHSN-KIKSIPKQVVKLEALQELNV 451

Query: 190 EVNDANTLPRGGLF-LEKPERIDLDAN 215
             N   ++P G    L   ++I L  N
Sbjct: 452 ASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 28/136 (20%), Positives = 47/136 (34%), Gaps = 14/136 (10%)

Query: 91  LQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDM--AVISDLKKLEILCLHGSSI 148
           L++  L +++  L  +P    L   L+ L L    ++ +    +    KL  L L  + I
Sbjct: 172 LKLNYLRISEAKLTGIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229

Query: 149 YQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDANTLPRG------ 200
             +       L  LR L L +   L  +P     L  L  + L  N+   +         
Sbjct: 230 RMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG 288

Query: 201 -GLFLEKPERIDLDAN 215
            G+       I L  N
Sbjct: 289 FGVKRAYYNGISLFNN 304

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 28/144 (19%), Positives = 57/144 (39%), Gaps = 7/144 (4%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLT--NLHTLCLYSCILKDMAVISD 134
           N    +P+ +   +  +  +++    L +     G      L+ L +    L  +     
Sbjct: 133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL- 191

Query: 135 LKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEV 191
            + L  L L  + I  + +E   + ++L  L L H + +++I       LP L  L L+ 
Sbjct: 192 PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH-NQIRMIENGSLSFLPTLRELHLDN 250

Query: 192 NDANTLPRGGLFLEKPERIDLDAN 215
           N  + +P G   L+  + + L  N
Sbjct: 251 NKLSRVPAGLPDLKLLQVVYLHTN 274

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 28/144 (19%), Positives = 57/144 (39%), Gaps = 9/144 (6%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMA--VISD 134
           N    I +     + +++ L ++  +L+ +P    L ++L  L ++   ++ +   V S 
Sbjct: 88  NKISKIHEKAFSPLRKLQKLYISKNHLVEIPP--NLPSSLVELRIHDNRIRKVPKGVFSG 145

Query: 135 LKKLEILCLHGSSIYQLPVEVGQLT--QLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVN 192
           L+ +  + + G+ +     E G     +L  L +     L  IP +     L  L L+ N
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA-KLTGIPKD-LPETLNELHLDHN 203

Query: 193 DANTLPRGGLF-LEKPERIDLDAN 215
               +    L    K  R+ L  N
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHN 227

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.6 bits (124), Expect = 6e-08
 Identities = 36/177 (20%), Positives = 73/177 (41%), Gaps = 8/177 (4%)

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
           L+ + +++ L L    +  + + +  L  L +L L +  + D+ V+S L KL+ L L  +
Sbjct: 108 LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN 166

Query: 147 SIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGL-FLE 205
            I  +   +  LT+L++L L    ++  +     L NL  LEL   +    P      L 
Sbjct: 167 QISDIV-PLAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLV 224

Query: 206 KPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFV----NKLVKVGSSQLKY 258
            P  +       +  +        E+ ++   L    N V     + V +G ++ ++
Sbjct: 225 VPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF 281

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 3/106 (2%)

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
             +  +    +L     ++   +   L ++  +   +  +K +  I  L  +  L L+G+
Sbjct: 20  DDAFAETIKDNLKK-KSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN 78

Query: 147 SIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVN 192
            +  +   +  L  L  L L       +  L K L  L SL LE N
Sbjct: 79  KLTDIK-PLANLKNLGWLFLDENKVKDLSSL-KDLKKLKSLSLEHN 122

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 3/106 (2%)

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
           ++ +  V  L L    L  +   +  L NL  L L    +KD++ + DLKKL+ L L  +
Sbjct: 64  IQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN 122

Query: 147 SIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVN 192
            I  +   +  L QL SL L +   +  I +   L  L +L LE N
Sbjct: 123 GISDING-LVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDN 166

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 51.7 bits (124), Expect = 8e-08
 Identities = 32/133 (24%), Positives = 48/133 (36%), Gaps = 10/133 (7%)

Query: 93  VRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILK---DMAVISDLKKLEILCLHGSSI 148
           V  +DL+  ++  L   S   L +L  L +                L  L IL L  +  
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 149 YQLPVEV-GQLTQLRSLDLRHCS-NLQVIPLN--KHLPNLTSLELEVNDANTLPRGGLF- 203
            QL       L  L  L L  C+ +  V+  N  K L +L  L L  N+   +     F 
Sbjct: 92  LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151

Query: 204 -LEKPERIDLDAN 215
            + +   +DL  N
Sbjct: 152 NMRRFHVLDLTFN 164

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 8/131 (6%)

Query: 92  QVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDMA--VISDLKKLEILCLHGSSI 148
            V+  DL+   + +L  S+    T+L  L L    +  +       L  L  L L  + +
Sbjct: 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335

Query: 149 YQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRGGL-FL 204
             +   +   L +L  LDL +  +++ +       LPNL  L L+ N   ++P G    L
Sbjct: 336 GSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394

Query: 205 EKPERIDLDAN 215
              ++I L  N
Sbjct: 395 TSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 17/129 (13%), Positives = 36/129 (27%), Gaps = 10/129 (7%)

Query: 75  RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMA-VIS 133
            +                +  LDL+        +       +    + S IL +   + S
Sbjct: 196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK-RFFDAIAGTKIQSLILSNSYNMGS 254

Query: 134 DLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEV 191
                        +   L       + +++ DL   S +  +  +   H  +L  L L  
Sbjct: 255 SFGHTNFKDPDNFTFKGLE-----ASGVKTCDLSK-SKIFALLKSVFSHFTDLEQLTLAQ 308

Query: 192 NDANTLPRG 200
           N+ N +   
Sbjct: 309 NEINKIDDN 317

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 10/132 (7%)

Query: 95  VLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDM--AVISDLKKLEILCLHGSSIYQLP 152
           +   +  +L S+PS  GL   + +L L +  +  +  + +     L+ L L  + I  + 
Sbjct: 35  ICKGSSGSLNSIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE 92

Query: 153 VEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRGGLF--LEKP 207
            +    L  L  LDL +   L  +  +  K L +LT L L  N   TL    LF  L K 
Sbjct: 93  EDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151

Query: 208 ERIDLDANVRLK 219
           + + +       
Sbjct: 152 QILRVGNMDTFT 163

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 7/133 (5%)

Query: 75  RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDM--AV 131
             N    I  + L+  + ++ L LT   + ++       L +L  L L    L ++  + 
Sbjct: 60  SNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSW 119

Query: 132 ISDLKKLEILCLHGSSIYQLPVEV--GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSL 187
              L  L  L L G+    L        LT+L+ L + +      I       L  L  L
Sbjct: 120 FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179

Query: 188 ELEVNDANTLPRG 200
           E++ +D  +    
Sbjct: 180 EIDASDLQSYEPK 192

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 15/148 (10%)

Query: 82  IPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILK--DMAVISDLKKL 138
           I +     +  +  L++   +L S    S+  + N+  L L+           +     +
Sbjct: 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV 224

Query: 139 EILCLHGSSIYQLPVEV---------GQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLEL 189
           E L L  + +                 +    R++ +   S  QV+ L   +  L  LE 
Sbjct: 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEF 284

Query: 190 EVNDANTLPRGGLF--LEKPERIDLDAN 215
             N   ++P  G+F  L   ++I L  N
Sbjct: 285 SRNQLKSVPD-GIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 20/129 (15%), Positives = 42/129 (32%), Gaps = 14/129 (10%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDMAVIS-- 133
           +   +     L+S+  V  L L     + L      + +++  L L    L         
Sbjct: 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243

Query: 134 --------DLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPN 183
                          + +   S++Q+   + Q++ L  L+      L+ +P      L +
Sbjct: 244 TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTS 302

Query: 184 LTSLELEVN 192
           L  + L  N
Sbjct: 303 LQKIWLHTN 311

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 4/106 (3%)

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
            + +  V+  +  + N+ SL + +   TNL  L L    + D++ + DL KLE L ++ +
Sbjct: 37  QKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN 95

Query: 147 SIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVN 192
            +  L         L  L L +        L  HL NL  L +  N
Sbjct: 96  RLKNL--NGIPSACLSRLFLDNNELRDTDSL-IHLKNLEILSIRNN 138

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 4/106 (3%)

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
              +      +L   ++  L  S   L+ +      +  ++ +A +     L+ L L  +
Sbjct: 15  DPGLANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHN 73

Query: 147 SIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVN 192
            I  L   +  LT+L  L +     L+ +        L+ L L+ N
Sbjct: 74  QISDLS-PLKDLTKLEELSVNRN-RLKNLNGIPSA-CLSRLFLDNN 116

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 2/85 (2%)

Query: 108 SSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLR 167
                L N     L    + D+    +L  ++      S+I  L   +   T L+ L L 
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLS 71

Query: 168 HCSNLQVIPLNKHLPNLTSLELEVN 192
           H     + PL K L  L  L +  N
Sbjct: 72  HNQISDLSPL-KDLTKLEELSVNRN 95

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 13/122 (10%)

Query: 82  IPQNLLRSMLQVRVLDLTDMNLLS--LPSSIGLLTNLHTLCLYSCILKD---MAVISDLK 136
           IP  L  +   +  LDL+  N     +P   G  + L +L L S        M  +  ++
Sbjct: 285 IPDFLSGACDTLTGLDLSG-NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343

Query: 137 KLEILCLHGSSIY-QLPVEVGQLT-QLRSLDLRHCSNLQ-VIP---LNKHLPNLTSLELE 190
            L++L L  +    +LP  +  L+  L +LDL    N    I           L  L L+
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN-NFSGPILPNLCQNPKNTLQELYLQ 402

Query: 191 VN 192
            N
Sbjct: 403 NN 404

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 10/111 (9%)

Query: 93  VRVLDLTDMNL----LSLPSSIGLLTNLHTLCLYSCILK-DMAVISDLKKLEILCLHGSS 147
           V  +DL+   L     ++ SS+  LT L +L L +  +   ++       L  L L  +S
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS 111

Query: 148 IY-QLP--VEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVND 193
           +   +     +G  + L+ L++   +      ++    L +L  L+L  N 
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 14/127 (11%)

Query: 77  NSFF-AIPQNLLRSMLQVRVLDLTDMNL---LSLPSSIGLLTNLHTLCLYSCILKDMAVI 132
           +    ++     +    +  LDL+  +L   ++  +S+G  + L  L + S  L     +
Sbjct: 87  SHINGSVSG--FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV 144

Query: 133 SD---LKKLEILCLHG----SSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLT 185
           S    L  LE+L L       +     V      +L+ L +        + ++    NL 
Sbjct: 145 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS-RCVNLE 203

Query: 186 SLELEVN 192
            L++  N
Sbjct: 204 FLDVSSN 210

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 11/132 (8%)

Query: 71  SDEGRKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILK--- 127
           S +     F A+  +LL S+  +  L L++ ++    S      +L +L L    L    
Sbjct: 58  SSKPLNVGFSAVSSSLL-SLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPV 116

Query: 128 -DMAVISDLKKLEILCLHGSSI-YQLPVEVG-QLTQLRSLDLRHC----SNLQVIPLNKH 180
             +  +     L+ L +  +++ +   V  G +L  L  LDL       +N+    L+  
Sbjct: 117 TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176

Query: 181 LPNLTSLELEVN 192
              L  L +  N
Sbjct: 177 CGELKHLAISGN 188

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.4 bits (111), Expect = 5e-06
 Identities = 34/141 (24%), Positives = 51/141 (36%), Gaps = 11/141 (7%)

Query: 82  IPQNLLRSMLQVRVLDLTDMNLLS--LPSSIGLLTNLHTLCLYSCILKDM--AVISDLKK 137
           IPQ L   +  +  L L D N L+  +PS +   TNL+ + L +  L       I  L+ 
Sbjct: 458 IPQEL-MYVKTLETLIL-DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515

Query: 138 LEILCLHGSSIY-QLPVEVGQLTQLRSLDLRHCSNLQ-VIPLNKHLPNLTSLELEVNDAN 195
           L IL L  +S    +P E+G    L  LDL   +     IP    +   +        A 
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNT-NLFNGTIP--AAMFKQSGKIAANFIAG 572

Query: 196 TLPRGGLFLEKPERIDLDANV 216
                       +      N+
Sbjct: 573 KRYVYIKNDGMKKECHGAGNL 593

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 12/117 (10%)

Query: 82  IPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDM--AVISDLKKLE 139
           +  +   ++     LD++  N  +    +G  + L  L +    L       IS   +L+
Sbjct: 194 VDVSRCVNL---EFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELK 250

Query: 140 ILCLHGSSIY-QLPVEVGQLTQLRSLDLRHCSNLQ-VIP--LNKHLPNLTSLELEVN 192
           +L +  +     +P     L  L+ L L         IP  L+     LT L+L  N
Sbjct: 251 LLNISSNQFVGPIPPL--PLKSLQYLSLAEN-KFTGEIPDFLSGACDTLTGLDLSGN 304

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 11/120 (9%)

Query: 82  IPQNLLRSMLQVRVLDLTDMNLLS--LPSSIG--LLTNLHTLCLYSCILKDM--AVISDL 135
           +P++L      +  LDL+  N  S  +  ++       L  L L +          +S+ 
Sbjct: 359 LPESLTNLSASLLTLDLSS-NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417

Query: 136 KKLEILCLHGSSIY-QLPVEVGQLTQLRSLDLRHCSNLQ-VIPLN-KHLPNLTSLELEVN 192
            +L  L L  + +   +P  +G L++LR L L     L+  IP    ++  L +L L+ N
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETLILDFN 476

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 21/132 (15%)

Query: 92  QVRVLDLTDMNLLSLPSSIGLLTNLH-----------------TLCLYSCILKDMAVISD 134
            +  L  +  +L  LP     L +L                   L + +  L+ +  + +
Sbjct: 92  HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQN 151

Query: 135 LKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDA 194
              L+I+ +  +S+ +LP     L     +   +   L+ +P  ++LP LT++  + N  
Sbjct: 152 SSFLKIIDVDNNSLKKLPDLPPSLEF---IAAGNN-QLEELPELQNLPFLTAIYADNNSL 207

Query: 195 NTLPRGGLFLEK 206
             LP   L LE 
Sbjct: 208 KKLPDLPLSLES 219

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 21/123 (17%), Positives = 50/123 (40%), Gaps = 11/123 (8%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLK 136
           N    +P+  L+++  +  +   + +L  LP       +L ++   + IL+++  + +L 
Sbjct: 183 NQLEELPE--LQNLPFLTAIYADNNSLKKLPDLPL---SLESIVAGNNILEELPELQNLP 237

Query: 137 KLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANT 196
            L  +    + +  LP     L  L      +  +  +  L +   +LT L++  N  + 
Sbjct: 238 FLTTIYADNNLLKTLPDLPPSLEAL------NVRDNYLTDLPELPQSLTFLDVSENIFSG 291

Query: 197 LPR 199
           L  
Sbjct: 292 LSE 294

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 22/115 (19%), Positives = 35/115 (30%), Gaps = 10/115 (8%)

Query: 84  QNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCL 143
            +           +  +M +  L     L    H L L +  L    +      LE L  
Sbjct: 43  WSEWERNAPPGNGEQREMAVSRLRDC--LDRQAHELELNNLGLSS--LPELPPHLESLVA 98

Query: 144 HGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLP 198
             +S+ +LP     L  L   +    +      L+   P L  L +  N    LP
Sbjct: 99  SCNSLTELPELPQSLKSLLVDNNNLKA------LSDLPPLLEYLGVSNNQLEKLP 147

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 12/114 (10%)

Query: 85  NLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLH 144
           +L      +  L++++  L+ LP+       L  L      L +  V    + L+ L + 
Sbjct: 311 SLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAE--VPELPQNLKQLHVE 365

Query: 145 GSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLP 198
            + + + P     +      DLR  S+L  +P  +   NL  L +E N     P
Sbjct: 366 YNPLREFPDIPESVE-----DLRMNSHLAEVP--ELPQNLKQLHVETNPLREFP 412

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 21/126 (16%)

Query: 89  SMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDL------------- 135
           S   ++       NL  +P     + +           +  A   +              
Sbjct: 9   SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 136 --KKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVND 193
             ++   L L+   +  LP     L    SL    C++L  +P  +   +L SL ++ N+
Sbjct: 69  LDRQAHELELNNLGLSSLPELPPHLE---SLVA-SCNSLTELP--ELPQSLKSLLVDNNN 122

Query: 194 ANTLPR 199
              L  
Sbjct: 123 LKALSD 128

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 9/125 (7%)

Query: 96  LDLTDMNLLSLPSSIGLLTNLHTLCLYSCILK--DMAVISDLKKLEILCLHGSSIYQLPV 153
           +D ++ NL  +P    L      L L    +    M  IS L +L +L L  + I  L  
Sbjct: 36  VDYSNRNLTHVPK--DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF 93

Query: 154 EV-GQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLF--LEKPERI 210
            V      L  LD+ H + LQ I     + +L  L+L  ND + LP    F  L K   +
Sbjct: 94  HVFLFNQDLEYLDVSH-NRLQNISCCP-MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFL 151

Query: 211 DLDAN 215
            L A 
Sbjct: 152 GLSAA 156

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 26/176 (14%), Positives = 60/176 (34%), Gaps = 31/176 (17%)

Query: 75  RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDM--AV 131
           +   F    + L     ++ +  L+  +   +        ++   L     +  D     
Sbjct: 313 KNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQG 372

Query: 132 ISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCS-----------------NLQV 174
            S LK+L+ L L  + +            + SL+    S                 ++ V
Sbjct: 373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432

Query: 175 IPLN---------KHLP-NLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKD 220
           + L+         + LP  +  L+L  N   ++P+    L+  + +++ +N +LK 
Sbjct: 433 LNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN-QLKS 487

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 8/104 (7%)

Query: 96  LDLTDMNLLSLPSSI-----GLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQ 150
           L+  D++L SL S           ++  L L S +L          K+++L LH + I  
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMS 464

Query: 151 LPVEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVN 192
           +P +V  L  L+ L++   + L+ +P      L +L  + L  N
Sbjct: 465 IPKDVTHLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 27/147 (18%), Positives = 53/147 (36%), Gaps = 10/147 (6%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDM------A 130
           N F         ++ +++ L L    L +      +  N+ +L      L  +       
Sbjct: 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422

Query: 131 VISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLEL 189
             +  + + +L L  + +    V      +++ LDL +   +  IP +  HL  L  L +
Sbjct: 423 TCAWAESILVLNLSSNMLTGS-VFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNV 480

Query: 190 EVNDANTLPRGGL-FLEKPERIDLDAN 215
             N   ++P G    L   + I L  N
Sbjct: 481 ASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 10/147 (6%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDM--AVIS 133
                +     R + ++  L+L    L +L + +   LT L TL L +  L  +   V  
Sbjct: 45  TGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD 104

Query: 134 DLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSN-LQVIPLN--KHLPNLTSLEL 189
            L +L+ L L G+ +  LP  V  +LT+L+ L L   +N LQ IP      L NL +L L
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL--NTNQLQSIPAGAFDKLTNLQTLSL 162

Query: 190 EVNDANTLPRGGL-FLEKPERIDLDAN 215
             N   ++P G    L K + I L  N
Sbjct: 163 STNQLQSVPHGAFDRLGKLQTITLFGN 189

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.8 bits (119), Expect = 3e-07
 Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 11/134 (8%)

Query: 94  RVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILK--DMAVISDLKKLEILCLHGSSIYQL 151
           RV    +  +  +PS   L  N   L      L+       S    LE + +  + + ++
Sbjct: 12  RVFLCQESKVTEIPS--DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 152 PVEVG---QLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRGG-LFLE 205
            +E      L +L  + +   +NL  I     ++LPNL  L +       LP    +   
Sbjct: 70  -IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128

Query: 206 KPERIDLDANVRLK 219
           +   +D+  N+ + 
Sbjct: 129 QKVLLDIQDNINIH 142

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.8 bits (119), Expect = 3e-07
 Identities = 23/135 (17%), Positives = 54/135 (40%), Gaps = 7/135 (5%)

Query: 75  RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGL-LTNLHTLCLYS----CILKDM 129
           + N+   I     +++  ++ L +++  +  LP    +       L +        ++  
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN 147

Query: 130 AVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSL 187
           + +    +  IL L+ + I ++       TQL  L+L   +NL+ +P +          L
Sbjct: 148 SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 207

Query: 188 ELEVNDANTLPRGGL 202
           ++     ++LP  GL
Sbjct: 208 DISRTRIHSLPSYGL 222

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.2 bits (107), Expect = 8e-06
 Identities = 26/143 (18%), Positives = 46/143 (32%), Gaps = 33/143 (23%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTD-MNLLSLPSSI--GLLTNLHTLCLYSCILKDMA--- 130
                +P       LQ  +LD+ D +N+ ++  +   GL      L L    ++++    
Sbjct: 114 TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA 173

Query: 131 -----------------------VISDLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDL 166
                                  V        IL +  + I+ LP      L +LR+   
Sbjct: 174 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 233

Query: 167 RHCSNLQVIPLNKHLPNLTSLEL 189
               NL+ +P  + L  L    L
Sbjct: 234 ---YNLKKLPTLEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 9/135 (6%)

Query: 75  RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSL--PSSIGLLTNLHTLCLYSCI-LKDMA- 130
                  I +        +  ++++  ++L +        L  LH + +     L  +  
Sbjct: 38  VLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP 97

Query: 131 -VISDLKKLEILCLHGSSIYQLPVEVGQ-LTQLRSLDLRHCSNLQVIPLN---KHLPNLT 185
               +L  L+ L +  + I  LP        Q   LD++   N+  I  N          
Sbjct: 98  EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV 157

Query: 186 SLELEVNDANTLPRG 200
            L L  N    +   
Sbjct: 158 ILWLNKNGIQEIHNS 172

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 8/145 (5%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGL---LTNLHTLCLYSCILKDMAVIS 133
           N    + +++   + Q+ V++L    L S     G    +  L  + +    +  +    
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL 190

Query: 134 DLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELE 190
               L  L L G+ I ++       L  L  L L    ++  +      + P+L  L L 
Sbjct: 191 -PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLN 248

Query: 191 VNDANTLPRGGLFLEKPERIDLDAN 215
            N    +P G    +  + + L  N
Sbjct: 249 NNKLVKVPGGLADHKYIQVVYLHNN 273

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 11/117 (9%)

Query: 81  AIPQNLLRSMLQVRVLDLTDMNLLSLP-SSIGLLTNLHTLCLYSCILKDMA--VISDLKK 137
            +P++L        +LDL +  +  +       L NLHTL L +  +  ++    + L K
Sbjct: 45  KVPKDLPPD---TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 101

Query: 138 LEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVN 192
           LE L L  + + +LP ++     L+ L +     +  +  +    L  +  +EL  N
Sbjct: 102 LERLYLSKNQLKELPEKM--PKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTN 155

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 15/128 (11%)

Query: 76  KNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKDMA--VI 132
             +   IPQ L  S   +  L L    +  + + S+  L NL  L L    +  +    +
Sbjct: 180 DTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236

Query: 133 SDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN--------KHLPNL 184
           ++   L  L L+ + + ++P  +     ++ + L + +N+  I  N            + 
Sbjct: 237 ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASY 295

Query: 185 TSLELEVN 192
           + + L  N
Sbjct: 296 SGVSLFSN 303

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 10/147 (6%)

Query: 75  RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILK--DMAVI 132
             N    I       ++++  L L+   L  LP    +   L  L ++   +     +V 
Sbjct: 84  INNKISKISPGAFAPLVKLERLYLSKNQLKELPE--KMPKTLQELRVHENEITKVRKSVF 141

Query: 133 SDLKKLEILCLHGSSIYQLPVEVG---QLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLEL 189
           + L ++ ++ L  + +    +E G    + +L  + +    N+  IP     P+LT L L
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQG-LPPSLTELHL 199

Query: 190 EVNDANTLPRGGLF-LEKPERIDLDAN 215
           + N    +    L  L    ++ L  N
Sbjct: 200 DGNKITKVDAASLKGLNNLAKLGLSFN 226

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 8/132 (6%)

Query: 75  RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGL-LTNLHTLCLYSCILKDMAVIS 133
           + N    I     +++  +  L L +  +  +       L  L  L L    LK++    
Sbjct: 60  QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE-K 118

Query: 134 DLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN----KHLPNLTSLE 188
             K L+ L +H + I ++   V   L Q+  ++L     L+   +     + +  L+ + 
Sbjct: 119 MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIR 177

Query: 189 LEVNDANTLPRG 200
           +   +  T+P+G
Sbjct: 178 IADTNITTIPQG 189

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.5 bits (116), Expect = 8e-07
 Identities = 33/173 (19%), Positives = 59/173 (34%), Gaps = 17/173 (9%)

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
              +  +  LD  + ++  +   I  LT L  L   S  +  +  +S    L  L    +
Sbjct: 38  EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSN 95

Query: 147 SIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEK 206
            +  L   V  LT+L  L+      L  + ++   P LT L    N    +        +
Sbjct: 96  KLTNLD--VTPLTKLTYLNCDTN-KLTKLDVS-QNPLLTYLNCARNTLTEIDVSH--NTQ 149

Query: 207 PERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFVNKLVKVGSSQLKYL 259
              +D   N ++   D      +  L  +          NK+ ++  SQ K L
Sbjct: 150 LTELDCHLNKKITKLDVTPQTQLTTLDCSF---------NKITELDVSQNKLL 193

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 27/141 (19%), Positives = 44/141 (31%), Gaps = 9/141 (6%)

Query: 94  RVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPV 153
             L+     L  +   +   T L  L  +         ++   +L  L    + I +L V
Sbjct: 130 TYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDV 187

Query: 154 EVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLD 213
              Q   L  L+     N+  + LN     LT L+   N    +      L +    D  
Sbjct: 188 --SQNKLLNRLNCDTN-NITKLDLN-QNIQLTFLDCSSNKLTEIDVTP--LTQLTYFDCS 241

Query: 214 ANVRLKDQDTVQLWGIEELSL 234
            N  L + D   L  +  L  
Sbjct: 242 VN-PLTELDVSTLSKLTTLHC 261

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 6/116 (5%)

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
           L   +Q+  LD +   L  +   +  LT L         L ++  +S L KL  L    +
Sbjct: 208 LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD-VSTLSKLTTLHCIQT 264

Query: 147 SIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGL 202
            + ++ +     TQL       C  ++ + +  H   L  L+ +      L     
Sbjct: 265 DLLEIDL--THNTQLIYFQAEGCRKIKELDV-THNTQLYLLDCQAAGITELDLSQN 317

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 2e-06
 Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 5/100 (5%)

Query: 120 CLYSCILKDMAVISDLKKLEILCLHG-SSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPL 177
           C     L  +  +   + L  L +     +  L +     L +LR+L +     L+ +  
Sbjct: 15  CTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAP 73

Query: 178 N--KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDAN 215
           +     P L+ L L  N   +L    +     + + L  N
Sbjct: 74  DAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.3 bits (112), Expect = 2e-06
 Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 17/141 (12%)

Query: 75  RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISD 134
            + +  ++P NL     Q+ VL++T   L+SLP       +L  L      L  +     
Sbjct: 67  NRLNLSSLPDNLPP---QITVLEITQNALISLPELPA---SLEYLDACDNRLSTLP--EL 118

Query: 135 LKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDA 194
              L+ L +  + +  LP     L  +      +  N Q+  L +   +L  L +  N  
Sbjct: 119 PASLKHLDVDNNQLTMLPELPALLEYI------NADNNQLTMLPELPTSLEVLSVRNNQL 172

Query: 195 NTLPRGGLFLEKPERIDLDAN 215
             LP      E  E +D+  N
Sbjct: 173 TFLPE---LPESLEALDVSTN 190

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.5 bits (110), Expect = 4e-06
 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 11/132 (8%)

Query: 86  LLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHG 145
           L      +  LD  D  L +LP     L +L    + +  L  +        LE +    
Sbjct: 95  LPELPASLEYLDACDNRLSTLPELPASLKHLD---VDNNQLTMLP--ELPALLEYINADN 149

Query: 146 SSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLE 205
           + +  LP      T L  L +R+   L  +P  +   +L +L++  N   +LP   +   
Sbjct: 150 NQLTMLPE---LPTSLEVLSVRNN-QLTFLP--ELPESLEALDVSTNLLESLPAVPVRNH 203

Query: 206 KPERIDLDANVR 217
             E  ++    R
Sbjct: 204 HSEETEIFFRCR 215

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 16/121 (13%), Positives = 28/121 (23%), Gaps = 20/121 (16%)

Query: 94  RVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPV 153
             LD++   L SLP+      +                              + I  +P 
Sbjct: 183 EALDVSTNLLESLPAVPVRNHHSEET------------------EIFFRCRENRITHIPE 224

Query: 154 EVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLD 213
            +  L    ++ L    N     + + L   T+                      R   D
Sbjct: 225 NILSLDPTCTIILED--NPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLAD 282

Query: 214 A 214
           A
Sbjct: 283 A 283

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 11/133 (8%)

Query: 94  RVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGS-SIYQ 150
               +T  ++  +PS   L  +  TL L    L+       S+L  +  + +    ++ Q
Sbjct: 14  EDFRVTCKDIQRIPS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ 70

Query: 151 LPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRGGLF--LE 205
           L       L+++  +++R+  NL  I  +  K LP L  L +        P        +
Sbjct: 71  LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTD 130

Query: 206 KPERIDLDANVRL 218
               +++  N  +
Sbjct: 131 IFFILEITDNPYM 143

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 26/155 (16%), Positives = 58/155 (37%), Gaps = 10/155 (6%)

Query: 75  RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSL--PSSIGLLTNLHTLCLYS-CILK--DM 129
            +     IP +   ++  +  + ++    L      S   L+ +  + + +   L   D 
Sbjct: 39  IETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98

Query: 130 AVISDLKKLEILCLHGSSIYQLP--VEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLT 185
             + +L  L+ L +  + +   P   +V        L++     +  IP+N  + L N T
Sbjct: 99  DALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET 158

Query: 186 -SLELEVNDANTLPRGGLFLEKPERIDLDANVRLK 219
            +L+L  N   ++        K + + L+ N  L 
Sbjct: 159 LTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLT 193

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 20/130 (15%), Positives = 44/130 (33%), Gaps = 9/130 (6%)

Query: 82  IPQNLLRSMLQVRVLDLTDMNLLSLP--SSIGLLTNLHTLCLYS----CILKDMAVISDL 135
           I  + L+ +  ++ L + +  L   P  + +        L +        +   A     
Sbjct: 96  IDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC 155

Query: 136 KKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPN-LTSLELEVN 192
            +   L L+ +    +       T+L ++ L     L VI  +    + +  + L++   
Sbjct: 156 NETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215

Query: 193 DANTLPRGGL 202
               LP  GL
Sbjct: 216 SVTALPSKGL 225

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 3/107 (2%)

Query: 89  SMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSI 148
           S ++  VLD +  N   L         L  L   +  L  +A +  L KL+ L L  + +
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRV 76

Query: 149 YQL-PVEVGQLTQLRSLDLRHC--SNLQVIPLNKHLPNLTSLELEVN 192
                V   +   L  L+L      +L  I   K L NL SL+L   
Sbjct: 77  SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 3/105 (2%)

Query: 91  LQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQ 150
           ++  VLD    N   +        NL  L L +  L  ++ +  L KL+ L L  + I+ 
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFG 85

Query: 151 L-PVEVGQLTQLRSLDLRHC--SNLQVIPLNKHLPNLTSLELEVN 192
              +   +L  L  L+L      ++  +   K L  L SL+L   
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 9e-06
 Identities = 42/294 (14%), Positives = 80/294 (27%), Gaps = 81/294 (27%)

Query: 16  RVHTLVNKLKAFCMLLDDDENIFMH------------DVACDVAISITSREQNMFTATDE 63
           R+     KL+   + L   +N+ +             DV     +     +  +F     
Sbjct: 133 RLQ-PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV-QCKMDFKIF----- 185

Query: 64  LVSGWEWSDEGRKNSFFAIPQNLLRSMLQ--VRVLDLTDMNLLSLPSSIGLLTN------ 115
                 W +    NS    P+ +L  MLQ  +  +D    +     S+I L  +      
Sbjct: 186 ------WLNLKNCNS----PETVLE-MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 116 -------LHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSL-DLR 167
                   +  CL   +L ++          + C       ++ +     T+ + + D  
Sbjct: 235 RRLLKSKPYENCLL--VLLNVQNAKAWNAFNLSC-------KILL----TTRFKQVTDFL 281

Query: 168 HCSNLQVIPLNKHLPNLT---SLELEVN----DANTLPR-------------GGLFLEKP 207
             +    I L+ H   LT      L +         LPR                  +  
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341

Query: 208 ERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFV--NKLVKVGSSQLKYL 259
              D   +V      T+    +  L  AE                + +  L  +
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 3/109 (2%)

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGS 146
             + ++ R LDL    +  + +    L     +      ++ +     L++L+ L ++ +
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN 74

Query: 147 SIYQL-PVEVGQLTQLRSLDLRHC--SNLQVIPLNKHLPNLTSLELEVN 192
            I ++       L  L  L L +     L  +     L +LT L +  N
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 18/113 (15%), Positives = 46/113 (40%), Gaps = 1/113 (0%)

Query: 80  FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLE 139
           F   ++++ +  +   L      +  + +++  L     L L +  ++ ++ +S ++ L 
Sbjct: 14  FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLR 73

Query: 140 ILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVN 192
           IL L  + I ++         L  L + +   +  +   + L NL  L +  N
Sbjct: 74  ILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLSGIEKLVNLRVLYMSNN 125

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 8/129 (6%)

Query: 92  QVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQL 151
            +  +   + ++ S+   I  L N+  L L    L D++ + +L  L  L L G+ +  L
Sbjct: 42  SIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL 100

Query: 152 PVEV-GQLTQLRSLDLRHCSNLQVIP--LNKHLPNLTSLELEVNDANTLPRGGLF--LEK 206
           P  V  +LT L+ L L   + LQ +P  +   L NLT L L  N   +LP+ G+F  L  
Sbjct: 101 PNGVFDKLTNLKELVL-VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK-GVFDKLTN 158

Query: 207 PERIDLDAN 215
              +DL  N
Sbjct: 159 LTELDLSYN 167

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 42/134 (31%), Positives = 56/134 (41%), Gaps = 8/134 (5%)

Query: 89  SMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDM--AVISDLKKLEILCLHG 145
            +  +  L LT   L SLP+ +   LTNL  L L    L+ +   V   L  L  L L  
Sbjct: 83  ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142

Query: 146 SSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRGGL 202
           + +  LP  V  +LT L  LDL   + LQ +P      L  L  L L  N   ++P G  
Sbjct: 143 NQLQSLPKGVFDKLTNLTELDL-SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF 201

Query: 203 -FLEKPERIDLDAN 215
             L   + I L  N
Sbjct: 202 DRLTSLQYIWLHDN 215

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 7/90 (7%)

Query: 131 VISDLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSL 187
            +S+ K L ++ L  + I  L  +    +TQL +L L   + L+ IP      L +L  L
Sbjct: 49  ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL-SYNRLRCIPPRTFDGLKSLRLL 107

Query: 188 ELEVNDANTLPRGGLF--LEKPERIDLDAN 215
            L  ND + +P  G F  L     + + AN
Sbjct: 108 SLHGNDISVVPE-GAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 6/105 (5%)

Query: 93  VRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMA--VISDLKKLEILCLHGSSIYQ 150
           V  L L       +P  +    +L  + L +  +  ++    S++ +L  L L  + +  
Sbjct: 33  VTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 151 LPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVN 192
           +P      L  LR L L H +++ V+P      L  L+ L +  N
Sbjct: 93  IPPRTFDGLKSLRLLSL-HGNDISVVPEGAFNDLSALSHLAIGAN 136

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 7/128 (5%)

Query: 94  RVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDM--AVISDLKKLEILCLHGSSIYQ 150
           ++L L D  +  L   +   L NL  L L S  L  +   V   L +L +L L  + +  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 151 LPVEV-GQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDANTLPRGGL-FLEKP 207
           LP  V  +L  L+ L +  C+ L  +P   + L +LT L L+ N   ++P G    L   
Sbjct: 103 LPSAVFDRLVHLKELFM-CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161

Query: 208 ERIDLDAN 215
               L  N
Sbjct: 162 THAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 38/118 (32%), Positives = 51/118 (43%), Gaps = 8/118 (6%)

Query: 103 LLSLPSSIGLLTNLHTLCLYSCILKDM--AVISDLKKLEILCLHGSSIYQLPVEV-GQLT 159
             S+P+ I   TN   L L+   +  +   V   L  L+ L L  + +  LPV V   LT
Sbjct: 31  HASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT 88

Query: 160 QLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDAN 215
           QL  LDL   + L V+P      L +L  L +  N    LPRG   L     + LD N
Sbjct: 89  QLTVLDL-GTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN 145

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDM--AVIS 133
           N    +   +  S++ ++ L L    L +LP  +   LT L  L L +  L  +  AV  
Sbjct: 50  NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109

Query: 134 DLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNK--HLPNLTSLELEV 191
            L  L+ L +  + + +LP  + +LT L  L L   + L+ IP      L +LT   L  
Sbjct: 110 RLVHLKELFMCCNKLTELPRGIERLTHLTHLAL-DQNQLKSIPHGAFDRLSSLTHAYLFG 168

Query: 192 N 192
           N
Sbjct: 169 N 169

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 8/129 (6%)

Query: 94  RVLDLTDMNLLSLPSSI-GLLTNLHTLCLYSCILKDM--AVISDLKKLEILCLHGSSIYQ 150
             LDL   +L SLP+ +   LT+L  L L    L+ +   V + L  L  L L  + +  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 151 LPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRGGL-FLEK 206
           LP  V  +LTQL+ L L + + LQ +P      L  L  L L  N   ++P G    L  
Sbjct: 91  LPNGVFDKLTQLKELAL-NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149

Query: 207 PERIDLDAN 215
            + I L  N
Sbjct: 150 LQYIWLHDN 158

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.6 bits (100), Expect = 7e-05
 Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 7/111 (6%)

Query: 86  LLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAV-----ISDLKKLEI 140
           + R+   +  + + D  +L L        NL   C  S             +   +KL  
Sbjct: 215 IARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCR 274

Query: 141 LCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNL--QVIPLNKHLPNLTSLEL 189
           L L      ++P+      Q+R LDL +          L +  PNL  LE 
Sbjct: 275 LGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET 325

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 17/124 (13%)

Query: 87  LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD---MAVISDLKKLEILCL 143
           L    ++  L L+ M    +P        +  L L   +L+      +I     LE+L  
Sbjct: 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET 325

Query: 144 HGS-SIYQLPVEVGQLTQLRSLDLRHCSNLQ-------------VIPLNKHLPNLTSLEL 189
                   L V      QL+ L +   ++ Q             +I L +    L  + +
Sbjct: 326 RNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV 385

Query: 190 EVND 193
            V+D
Sbjct: 386 YVSD 389

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 5/94 (5%)

Query: 126 LKDMAVISDLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLN--KHLP 182
           +    +   L  L  L L  + +  +        + ++ L L   + ++ I       L 
Sbjct: 44  ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL-GENKIKEISNKMFLGLH 102

Query: 183 NLTSLELEVNDANTLPRGGL-FLEKPERIDLDAN 215
            L +L L  N  + +  G    L     ++L +N
Sbjct: 103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 9/129 (6%)

Query: 68  WEWSDEGRKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILK 127
           W+  D   KN    +   LL     V         +    +       +  + L + +++
Sbjct: 49  WQTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 106

Query: 128 D---MAVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLRHCSNLQ---VIPLNKH 180
                 ++S   KL+ L L G  +    V  + + + L  L+L  CS      +  L   
Sbjct: 107 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 166

Query: 181 LPNLTSLEL 189
              L  L L
Sbjct: 167 CSRLDELNL 175

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 27/148 (18%), Positives = 44/148 (29%), Gaps = 32/148 (21%)

Query: 77  NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSI-----GLLTNLHTLCLYSCILKD--- 128
                     +R    +  LDL+D   L     I          L  L L +  ++    
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218

Query: 129 --MAVISDLKKLEILCLHGSSIYQLPVEVGQ--LTQLRSLDLRHCS-------------- 170
              A+ +   +L+ L L  +S+            +QL SL+L                  
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSV 278

Query: 171 ------NLQVIPLNKHLPNLTSLELEVN 192
                  L   P    LP + +L L+ N
Sbjct: 279 LDLSYNRLDRNPSPDELPQVGNLSLKGN 306

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	259
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.87
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.85
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.82
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.8
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.8
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.79
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.79
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.79
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.79
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.79
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.79
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.78
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.78
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.78
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.77
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.77
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.77
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.77
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.77
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.77
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.76
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.76
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.76
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.76
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.76
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.75
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.75
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.75
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.75
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.75
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.74
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.74
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.74
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.74
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.73
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.73
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.73
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.72
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.72
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.72
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.72
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.71
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.71
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.71
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.71
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.7
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.7
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.7
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.7
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.7
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.69
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.69
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.69
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.68
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.68
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.67
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.67
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.67
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.67
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.66
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.66
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.66
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.66
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.65
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.65
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.65
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.65
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.65
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.64
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.64
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.64
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.63
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.63
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.63
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.62
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.62
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.62
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.61
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.61
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.61
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.61
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.6
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.6
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.6
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.6
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.58
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.55
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.55
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.55
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.54
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.54
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.52
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.52
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.51
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.51
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.51
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.51
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.5
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.49
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.48
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.47
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.47
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.43
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.43
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.41
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.4
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.38
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.38
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.38
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.36
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.28
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.25
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.24
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.22
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.1
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.03
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.02
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.0
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.95
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.88
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.83
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.81
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.74
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.63
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.55
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.49
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.33
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.26
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.24
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.17
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.11
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	97.69
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.41
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.38
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.24
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.05
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.97
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.81
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.67
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.52
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.01
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	95.27
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.24
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	91.32
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	87.69

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.87  E-value=7.1e-22  Score=166.07  Aligned_cols=173  Identities=22%  Similarity=0.342  Sum_probs=105.7

Q ss_pred             cccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCC-Ccccchhhcc-
Q 039152           81 AIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSS-IYQLPVEVGQ-  157 (259)
Q Consensus        81 ~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~-i~~lp~~i~~-  157 (259)
                      .+|+.++ ++++|++|++++|.+..+|..++.+++|++|++++|.+.. |..++.+++|++|++++|. +..+|..++. 
T Consensus        95 ~lp~~l~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~  173 (328)
T 4fcg_A           95 QFPDQAF-RLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLAST  173 (328)
T ss_dssp             SCCSCGG-GGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE
T ss_pred             hcChhhh-hCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhc
Confidence            4555543 4666666666666666666666666666666666666666 5566666666666666643 3355555443 


Q ss_pred             --------CCcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCC-ccccc-c
Q 039152          158 --------LTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKD-QDTVQ-L  226 (259)
Q Consensus       158 --------l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~~-l  226 (259)
                              +++|++|++++| .+..+|.. +++++|++|++++|.++.+|..++.+++|+.|++++|..... +..+. +
T Consensus       174 ~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l  252 (328)
T 4fcg_A          174 DASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR  252 (328)
T ss_dssp             C-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred             cchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCC
Confidence                    666666666664 33355543 566677777777777766666666677777777776533322 33333 7


Q ss_pred             cccceeeccccchhhhhhhhhhhhcccccccC
Q 039152          227 WGIEELSLAELLDHIKNFVNKLVKVGSSQLKY  258 (259)
Q Consensus       227 ~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~  258 (259)
                      ++|+.|++++| .....+|..+  ..+++|++
T Consensus       253 ~~L~~L~L~~n-~~~~~~p~~~--~~l~~L~~  281 (328)
T 4fcg_A          253 APLKRLILKDC-SNLLTLPLDI--HRLTQLEK  281 (328)
T ss_dssp             CCCCEEECTTC-TTCCBCCTTG--GGCTTCCE
T ss_pred             CCCCEEECCCC-Cchhhcchhh--hcCCCCCE
Confidence            77777777776 4556666543  35666654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.85  E-value=1.5e-21  Score=164.01  Aligned_cols=174  Identities=23%  Similarity=0.289  Sum_probs=143.0

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC--chhhh---------CCCCCcEEEecCCCC
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD--MAVIS---------DLKKLEILCLHGSSI  148 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~---------~l~~L~~L~l~~~~i  148 (259)
                      ..+|.. |.++++|++|++++|.+..+|..++.+++|++|++++|.+.+  |..++         .+++|++|++++|.+
T Consensus       117 ~~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l  195 (328)
T 4fcg_A          117 MELPDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI  195 (328)
T ss_dssp             CCCCSC-GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC
T ss_pred             cchhHH-HhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc
Confidence            467765 478999999999999999999999999999999999987655  55554         499999999999999


Q ss_pred             cccchhhccCCcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCC-CccCCCCcCCCCCCeEEeecccccC-Cccccc
Q 039152          149 YQLPVEVGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDA-NTLPRGGLFLEKPERIDLDANVRLK-DQDTVQ  225 (259)
Q Consensus       149 ~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~-~~~p~~~~~l~~L~~L~l~~~~~~~-~~~~~~  225 (259)
                      ..+|..++.+++|++|++++|. +..+|.. +.+++|++|++++|.+ +.+|..++.+++|+.|++++|.... .+..+.
T Consensus       196 ~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~  274 (328)
T 4fcg_A          196 RSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH  274 (328)
T ss_dssp             CCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG
T ss_pred             CcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh
Confidence            9999999999999999999865 4456554 7889999999999876 5888888999999999999984443 354444


Q ss_pred             -ccccceeeccccchhhhhhhhhhhhcccccccC
Q 039152          226 -LWGIEELSLAELLDHIKNFVNKLVKVGSSQLKY  258 (259)
Q Consensus       226 -l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~  258 (259)
                       +++|+.|++++| ...+.+|+.+.  .+++|+.
T Consensus       275 ~l~~L~~L~L~~n-~~~~~iP~~l~--~L~~L~~  305 (328)
T 4fcg_A          275 RLTQLEKLDLRGC-VNLSRLPSLIA--QLPANCI  305 (328)
T ss_dssp             GCTTCCEEECTTC-TTCCCCCGGGG--GSCTTCE
T ss_pred             cCCCCCEEeCCCC-CchhhccHHHh--hccCceE
Confidence             999999999998 67888888654  6777654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.82  E-value=1.2e-19  Score=149.25  Aligned_cols=175  Identities=23%  Similarity=0.240  Sum_probs=126.2

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCC-chhhcCCCCCcEEEecCCC-CCC--chhhhCCCCCcEEEecCCCCccc-chh
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCI-LKD--MAVISDLKKLEILCLHGSSIYQL-PVE  154 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~-~~~--~~~~~~l~~L~~L~l~~~~i~~l-p~~  154 (259)
                      ..+++..|..+++|++|++++|.+..+ |..+..+++|++|++++|. +..  +..+..+++|++|++++|.+..+ |..
T Consensus        45 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  124 (285)
T 1ozn_A           45 SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL  124 (285)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhH
Confidence            456666677888888888888888755 6678888888888888886 666  46677888888888888888766 445


Q ss_pred             hccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeecccccCC-ccccc-cccc
Q 039152          155 VGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDANVRLKD-QDTVQ-LWGI  229 (259)
Q Consensus       155 i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~-~~~~~-l~~L  229 (259)
                      +..+++|++|++++|. +..++..  ..+++|++|++++|.++.+|.. +..+++|+.|++++|..... +..+. +++|
T Consensus       125 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  203 (285)
T 1ozn_A          125 FRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL  203 (285)
T ss_dssp             TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             hhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccc
Confidence            7788888888888743 4455543  6778888888888888777664 66788888888888744333 33333 7888


Q ss_pred             ceeeccccchhhhhhhhhhhhcccccccC
Q 039152          230 EELSLAELLDHIKNFVNKLVKVGSSQLKY  258 (259)
Q Consensus       230 ~~L~l~~~~~~~~~~~~~l~~~~l~~L~~  258 (259)
                      +.|+++++  .+..++... +..+++|++
T Consensus       204 ~~L~l~~n--~l~~~~~~~-~~~l~~L~~  229 (285)
T 1ozn_A          204 MTLYLFAN--NLSALPTEA-LAPLRALQY  229 (285)
T ss_dssp             CEEECCSS--CCSCCCHHH-HTTCTTCCE
T ss_pred             cEeeCCCC--cCCcCCHHH-cccCcccCE
Confidence            88888888  666666543 446666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.80  E-value=4.7e-19  Score=155.03  Aligned_cols=135  Identities=24%  Similarity=0.317  Sum_probs=103.8

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCc-hhhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccch-hh
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLP-SSIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPV-EV  155 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~-~i  155 (259)
                      ..+++..|.++++|++|++++|.+..++ ..+.++++|++|++++|.++. + ..++.+++|++|++++|.+..+|. .+
T Consensus        88 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  167 (452)
T 3zyi_A           88 QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF  167 (452)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTT
T ss_pred             ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHH
Confidence            4555666788999999999999888654 578889999999999999888 4 457888999999999998887776 47


Q ss_pred             ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecc
Q 039152          156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDAN  215 (259)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~  215 (259)
                      ..+++|+.|++++|+.+..++..  ..+++|++|++++|.++.+|. +..+++|+.|++++|
T Consensus       168 ~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N  228 (452)
T 3zyi_A          168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGN  228 (452)
T ss_dssp             TTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTS
T ss_pred             hcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCC
Confidence            78888888888887777777764  566777777777777766654 355666666666655

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.80  E-value=8.6e-19  Score=145.96  Aligned_cols=146  Identities=22%  Similarity=0.213  Sum_probs=71.7

Q ss_pred             hCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecC
Q 039152           88 RSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLR  167 (259)
Q Consensus        88 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~  167 (259)
                      ..+++|++|++++|.+..++. +..+++|++|++++|.++.++.++.+++|++|++++|.+..+|. +..+++|++|+++
T Consensus        60 ~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~  137 (308)
T 1h6u_A           60 QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLD  137 (308)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECC
T ss_pred             hccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECC
Confidence            445555555555555555444 55555555555555555554445555555555555555554443 4555555555555


Q ss_pred             CCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeecccc
Q 039152          168 HCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAEL  237 (259)
Q Consensus       168 ~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~  237 (259)
                      +| .+..++....+++|+.|++++|.++.+|. +..+++|+.|++++|.....+....+++|+.|++++|
T Consensus       138 ~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N  205 (308)
T 1h6u_A          138 LN-QITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNN  205 (308)
T ss_dssp             SS-CCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTS
T ss_pred             CC-ccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCC
Confidence            53 22233323444555555555555544443 3445555555555543333222222455555555555

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.79  E-value=4.6e-19  Score=154.60  Aligned_cols=135  Identities=27%  Similarity=0.367  Sum_probs=88.1

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCc-hhhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccch-hh
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLP-SSIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPV-EV  155 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~-~i  155 (259)
                      ..++...|.++++|++|++++|.+..++ ..+.++++|++|++++|.++. + ..+..+++|++|++++|.+..+|. .+
T Consensus        77 ~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~  156 (440)
T 3zyj_A           77 QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF  156 (440)
T ss_dssp             CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTT
T ss_pred             CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHh
Confidence            3455555677777777888777777544 457777777777777777777 3 357777777777777777776655 36


Q ss_pred             ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecc
Q 039152          156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDAN  215 (259)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~  215 (259)
                      ..+++|++|++++|+.+..++..  .++++|++|++++|.++.+|. +..+++|+.|++++|
T Consensus       157 ~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N  217 (440)
T 3zyj_A          157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGN  217 (440)
T ss_dssp             TTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTS
T ss_pred             hhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCC
Confidence            66777777777766666666653  455556666655555555543 244555555555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.79  E-value=1.8e-18  Score=141.34  Aligned_cols=157  Identities=28%  Similarity=0.355  Sum_probs=114.0

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCchh-hcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccchh-h
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSS-IGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPVE-V  155 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-i  155 (259)
                      ..++...|.++++|++|++++|.++.+|.. +..+++|++|++++|.++. + ..+..+++|++|++++|.+..+|.. +
T Consensus        50 ~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  129 (270)
T 2o6q_A           50 SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF  129 (270)
T ss_dssp             SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT
T ss_pred             CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh
Confidence            456665667788888888888888877664 4678888888888888777 3 4567788888888888888766654 6


Q ss_pred             ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeecccccCCccc-cc-ccccc
Q 039152          156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDANVRLKDQDT-VQ-LWGIE  230 (259)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~~-~~-l~~L~  230 (259)
                      ..+++|++|++++| .+..+|..  ..+++|+.|++++|.++.+|.. +..+++|+.|++++|.....+.. +. +++|+
T Consensus       130 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  208 (270)
T 2o6q_A          130 DSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK  208 (270)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence            77888888888874 45555553  6778888888888888777654 55778888888888744444332 32 77888


Q ss_pred             eeecccc
Q 039152          231 ELSLAEL  237 (259)
Q Consensus       231 ~L~l~~~  237 (259)
                      .|+++++
T Consensus       209 ~L~l~~N  215 (270)
T 2o6q_A          209 MLQLQEN  215 (270)
T ss_dssp             EEECCSS
T ss_pred             EEEecCC
Confidence            8888776

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.79  E-value=2e-19  Score=150.13  Aligned_cols=149  Identities=20%  Similarity=0.185  Sum_probs=69.5

Q ss_pred             hCCCCccEEEcCCCCCC-CCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCc-ccchhhccCC-cCC
Q 039152           88 RSMLQVRVLDLTDMNLL-SLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIY-QLPVEVGQLT-QLR  162 (259)
Q Consensus        88 ~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~-~L~  162 (259)
                      .++++|++|++++|.+. .+|..++.+++|++|++++|.+.+  |..++.+++|++|++++|.+. .+|..++.++ +|+
T Consensus        98 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~  177 (313)
T 1ogq_A           98 AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT  177 (313)
T ss_dssp             GGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCC
T ss_pred             hcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCc
Confidence            45555555555555554 445555555555555555555553  445555555555555555555 4555555554 555


Q ss_pred             EEecCCCCCceeeCCC-CCCCCCcEEEeeccCCC-ccCCCCcCCCCCCeEEeecccccCC-cccccccccceeecccc
Q 039152          163 SLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDAN-TLPRGGLFLEKPERIDLDANVRLKD-QDTVQLWGIEELSLAEL  237 (259)
Q Consensus       163 ~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~~  237 (259)
                      +|++++|...+..|.. ..++ |+.|++++|.++ ..|..+..+++|+.|++++|..... +....+++|+.|++++|
T Consensus       178 ~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N  254 (313)
T 1ogq_A          178 SMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN  254 (313)
T ss_dssp             EEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSS
T ss_pred             EEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCC
Confidence            5555554333233322 2222 444444444332 2333334444444444444422211 11111444555555544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.79  E-value=1.8e-19  Score=149.63  Aligned_cols=149  Identities=20%  Similarity=0.174  Sum_probs=97.1

Q ss_pred             CCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-c--hhhhCCCCCcEEEecCCCCccc-chhhccCCcCCEE
Q 039152           89 SMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-M--AVISDLKKLEILCLHGSSIYQL-PVEVGQLTQLRSL  164 (259)
Q Consensus        89 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~--~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L  164 (259)
                      .+++|++|++++|.+..+|..+..+++|++|++++|.+.. +  ..+..+++|++|++++|.+... |..+..+++|++|
T Consensus        76 ~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  155 (306)
T 2z66_A           76 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL  155 (306)
T ss_dssp             SCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred             cccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence            5666666666666666666666666677777777766665 2  3566677777777777766633 3446667777777


Q ss_pred             ecCCCCCce-eeCCC-CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecccccCCcc-ccc-ccccceeecccc
Q 039152          165 DLRHCSNLQ-VIPLN-KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRLKDQD-TVQ-LWGIEELSLAEL  237 (259)
Q Consensus       165 ~l~~~~~~~-~lp~~-~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~-~~~-l~~L~~L~l~~~  237 (259)
                      ++++|.... ..|.. ..+++|++|++++|.++.+ |..+..+++|+.|++++|.....+. .+. +++|+.|++++|
T Consensus       156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  233 (306)
T 2z66_A          156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN  233 (306)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred             ECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence            777754333 34443 6777778888877777655 5566677778888887774443322 223 777888888877

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.79  E-value=2.1e-18  Score=141.06  Aligned_cols=149  Identities=30%  Similarity=0.355  Sum_probs=124.6

Q ss_pred             HhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccchh-hccCCcCCE
Q 039152           87 LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRS  163 (259)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~  163 (259)
                      +..+++|++|++++|.+..++ .++.+++|++|++++|.++. + ..++.+++|++|++++|++..+|.. ++.+++|++
T Consensus        59 l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  137 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY  137 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence            468999999999999998875 58899999999999999988 4 4578999999999999999988766 788999999


Q ss_pred             EecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeecccccCCcc-ccc-ccccceeecccc
Q 039152          164 LDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDANVRLKDQD-TVQ-LWGIEELSLAEL  237 (259)
Q Consensus       164 L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~-~~~-l~~L~~L~l~~~  237 (259)
                      |++++| .+..+|..  ..+++|+.|++++|.++.+|.. +..+++|+.|++++|.....+. .+. +++|+.|++++|
T Consensus       138 L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          138 LNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence            999996 45566653  7889999999999999877765 4689999999999985444433 233 899999999987

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.79  E-value=1.4e-18  Score=151.45  Aligned_cols=175  Identities=21%  Similarity=0.238  Sum_probs=143.6

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCC-CCcccch-h
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGS-SIYQLPV-E  154 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~-~i~~lp~-~  154 (259)
                      ..++...|.++++|++|++++|.++.+|. .+..+++|++|++++|.+.. + ..+..+++|++|++++| .+..++. .
T Consensus       101 ~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~  180 (440)
T 3zyj_A          101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA  180 (440)
T ss_dssp             CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT
T ss_pred             CccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcch
Confidence            56677788999999999999999998876 68999999999999999988 3 57889999999999984 5677766 4


Q ss_pred             hccCCcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecccccCC-ccccc-ccccce
Q 039152          155 VGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRLKD-QDTVQ-LWGIEE  231 (259)
Q Consensus       155 i~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~-~~~~~-l~~L~~  231 (259)
                      +..+++|++|++++| .+..+|....+++|+.|++++|.++.+ |..+..+++|+.|++.+|..... +..+. +++|+.
T Consensus       181 ~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  259 (440)
T 3zyj_A          181 FEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE  259 (440)
T ss_dssp             TTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCE
T ss_pred             hhcccccCeecCCCC-cCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCE
Confidence            889999999999985 566788778899999999999999766 66777899999999998844443 33333 899999


Q ss_pred             eeccccchhhhhhhhhhhhcccccccC
Q 039152          232 LSLAELLDHIKNFVNKLVKVGSSQLKY  258 (259)
Q Consensus       232 L~l~~~~~~~~~~~~~l~~~~l~~L~~  258 (259)
                      |++++|  .+..++... +..+++|+.
T Consensus       260 L~L~~N--~l~~~~~~~-~~~l~~L~~  283 (440)
T 3zyj_A          260 INLAHN--NLTLLPHDL-FTPLHHLER  283 (440)
T ss_dssp             EECTTS--CCCCCCTTT-TSSCTTCCE
T ss_pred             EECCCC--CCCccChhH-hccccCCCE
Confidence            999999  777777654 556777664

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.78  E-value=3.7e-19  Score=148.52  Aligned_cols=172  Identities=21%  Similarity=0.220  Sum_probs=141.7

Q ss_pred             cccHHHHhCCCCccEEEcCC-CCCC-CCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCc-ccchhh
Q 039152           81 AIPQNLLRSMLQVRVLDLTD-MNLL-SLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIY-QLPVEV  155 (259)
Q Consensus        81 ~l~~~~~~~l~~L~~L~l~~-~~~~-~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~-~lp~~i  155 (259)
                      .+|.. |.++++|++|++++ |.+. .+|..++.+++|++|++++|.+.+  |..++.+++|++|++++|.+. .+|..+
T Consensus        67 ~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  145 (313)
T 1ogq_A           67 PIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI  145 (313)
T ss_dssp             ECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred             ccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH
Confidence            56765 57999999999995 7777 689999999999999999999985  788999999999999999998 789999


Q ss_pred             ccCCcCCEEecCCCCCceeeCCC-CCCC-CCcEEEeeccCCC-ccCCCCcCCCCCCeEEeeccccc-CCccccc-ccccc
Q 039152          156 GQLTQLRSLDLRHCSNLQVIPLN-KHLP-NLTSLELEVNDAN-TLPRGGLFLEKPERIDLDANVRL-KDQDTVQ-LWGIE  230 (259)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~lp~~-~~l~-~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~-~~~~~~~-l~~L~  230 (259)
                      ..+++|++|++++|...+.+|.. ..++ +|+.|++++|.++ .+|..+..++ |+.|++++|... ..+..+. +++|+
T Consensus       146 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~  224 (313)
T 1ogq_A          146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQ  224 (313)
T ss_dssp             GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCS
T ss_pred             hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCC
Confidence            99999999999997666577766 6776 9999999999986 7888888887 999999999444 3344444 99999


Q ss_pred             eeeccccchhhhhhhhhhhhcccccccC
Q 039152          231 ELSLAELLDHIKNFVNKLVKVGSSQLKY  258 (259)
Q Consensus       231 ~L~l~~~~~~~~~~~~~l~~~~l~~L~~  258 (259)
                      .|+++++  .+...++.  ...+++|++
T Consensus       225 ~L~L~~N--~l~~~~~~--~~~l~~L~~  248 (313)
T 1ogq_A          225 KIHLAKN--SLAFDLGK--VGLSKNLNG  248 (313)
T ss_dssp             EEECCSS--EECCBGGG--CCCCTTCCE
T ss_pred             EEECCCC--ceeeecCc--ccccCCCCE
Confidence            9999999  45444333  235566654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.78  E-value=3.1e-19  Score=143.17  Aligned_cols=172  Identities=18%  Similarity=0.196  Sum_probs=142.1

Q ss_pred             ccccHHHHhCCCCccEEEcCCCC-CCCCch-hhcCCCCCcEEEecC-CCCCC-c-hhhhCCCCCcEEEecCCCCcccchh
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMN-LLSLPS-SIGLLTNLHTLCLYS-CILKD-M-AVISDLKKLEILCLHGSSIYQLPVE  154 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~-~~~lp~-~i~~l~~L~~L~l~~-~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~  154 (259)
                      ..+|+..|.++++|++|++++|. ++.++. .+..+++|++|++++ |.++. + ..+..+++|++|++++|.++.+|. 
T Consensus        44 ~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-  122 (239)
T 2xwt_C           44 RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-  122 (239)
T ss_dssp             SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-
T ss_pred             eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-
Confidence            56777778899999999999997 887765 688999999999998 89988 4 578899999999999999999887 


Q ss_pred             hccCCcCC---EEecCCCCCceeeCCC--CCCCCCc-EEEeeccCCCccCCCCcCCCCCCeEEeeccc-ccCCcc-ccc-
Q 039152          155 VGQLTQLR---SLDLRHCSNLQVIPLN--KHLPNLT-SLELEVNDANTLPRGGLFLEKPERIDLDANV-RLKDQD-TVQ-  225 (259)
Q Consensus       155 i~~l~~L~---~L~l~~~~~~~~lp~~--~~l~~L~-~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~-~~~~~~-~~~-  225 (259)
                      +..+++|+   +|++++|..+..+|..  ..+++|+ .|++++|.++.+|......++|+.|++.+|. ....+. .+. 
T Consensus       123 ~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~  202 (239)
T 2xwt_C          123 LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGG  202 (239)
T ss_dssp             CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTT
T ss_pred             cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhc
Confidence            88888888   9999996477778775  7889999 9999999999999887766899999999984 333333 333 


Q ss_pred             c-cccceeeccccchhhhhhhhhhhhcccccccC
Q 039152          226 L-WGIEELSLAELLDHIKNFVNKLVKVGSSQLKY  258 (259)
Q Consensus       226 l-~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~  258 (259)
                      + ++|+.|+++++  .+..+|..    .|++|+.
T Consensus       203 l~~~L~~L~l~~N--~l~~l~~~----~~~~L~~  230 (239)
T 2xwt_C          203 VYSGPSLLDVSQT--SVTALPSK----GLEHLKE  230 (239)
T ss_dssp             CSBCCSEEECTTC--CCCCCCCT----TCTTCSE
T ss_pred             cccCCcEEECCCC--ccccCChh----HhccCce
Confidence            7 89999999999  77788764    4555543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.78  E-value=7.9e-19  Score=148.75  Aligned_cols=158  Identities=20%  Similarity=0.224  Sum_probs=123.2

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCC-chhhcCCCCCcEEEecCCCCCC-chh-hhCCCCCcEEEecCCCCcccch--h
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKD-MAV-ISDLKKLEILCLHGSSIYQLPV--E  154 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~~~i~~lp~--~  154 (259)
                      ..+|...|.++++|++|++++|.++.+ |..++.+++|++|++++|.++. ++. ++.+++|++|++++|.+..+|.  .
T Consensus        65 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~  144 (353)
T 2z80_A           65 TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL  144 (353)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCS
T ss_pred             cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhh
Confidence            456666678888999999998888865 4568888889999999988888 544 7888899999999888888876  5


Q ss_pred             hccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecccccCCccccc--cccc
Q 039152          155 VGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRLKDQDTVQ--LWGI  229 (259)
Q Consensus       155 i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~~~~--l~~L  229 (259)
                      +..+++|++|++++|+.+..++..  ..+++|++|++++|.++.+ |..+..+++|++|++.+|.....+..+.  +++|
T Consensus       145 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L  224 (353)
T 2z80_A          145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV  224 (353)
T ss_dssp             CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTE
T ss_pred             hccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccc
Confidence            788888999999887666666543  7788888999998888755 7777788888888888875444333322  7788


Q ss_pred             ceeecccc
Q 039152          230 EELSLAEL  237 (259)
Q Consensus       230 ~~L~l~~~  237 (259)
                      +.|+++++
T Consensus       225 ~~L~L~~n  232 (353)
T 2z80_A          225 ECLELRDT  232 (353)
T ss_dssp             EEEEEESC
T ss_pred             cEEECCCC
Confidence            88888777

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.77  E-value=2.3e-18  Score=147.83  Aligned_cols=116  Identities=20%  Similarity=0.311  Sum_probs=79.4

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-h
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE-V  155 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i  155 (259)
                      ..+|+.+|.++++|++|++++|.+..++. .+..+++|++|++++|.+..  +..++.+++|++|++++|.+..+|.. +
T Consensus        58 ~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~  137 (390)
T 3o6n_A           58 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF  137 (390)
T ss_dssp             SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHh
Confidence            56777777778888888888887775543 67777778888887777776  34567777777777777777777766 4


Q ss_pred             ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCc
Q 039152          156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANT  196 (259)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~  196 (259)
                      ..+++|++|++++|.. ..++..  ..+++|++|++++|.++.
T Consensus       138 ~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          138 HNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             TTCTTCCEEECCSSCC-CBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             cCCCCCcEEECCCCcc-CccChhhccCCCCCCEEECCCCcCCc
Confidence            6777777777777443 333322  555666666666655543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.77  E-value=3e-18  Score=141.50  Aligned_cols=171  Identities=26%  Similarity=0.310  Sum_probs=141.3

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCC-chhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccC
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQL  158 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l  158 (259)
                      ..+|.++   .+.+++|++++|.+..+ |..+..+++|++|++++|.++..+..+.+++|++|++++|.+..+|..+..+
T Consensus        23 ~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l   99 (290)
T 1p9a_G           23 TALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTL   99 (290)
T ss_dssp             SSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTC
T ss_pred             CcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccC
Confidence            4667654   36899999999999965 5679999999999999999998333488999999999999999999999999


Q ss_pred             CcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCCC-cCCCCCCeEEeecccccCCcccc-c-ccccceee
Q 039152          159 TQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRGG-LFLEKPERIDLDANVRLKDQDTV-Q-LWGIEELS  233 (259)
Q Consensus       159 ~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~~-~~l~~L~~L~l~~~~~~~~~~~~-~-l~~L~~L~  233 (259)
                      ++|++|++++| .+..+|..  ..+++|++|++++|.++.+|... ..+++|+.|++++|.....+..+ . +++|+.|+
T Consensus       100 ~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  178 (290)
T 1p9a_G          100 PALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL  178 (290)
T ss_dssp             TTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEE
Confidence            99999999995 55666654  88999999999999999888764 58999999999999655555443 3 99999999


Q ss_pred             ccccchhhhhhhhhhhhcccccccC
Q 039152          234 LAELLDHIKNFVNKLVKVGSSQLKY  258 (259)
Q Consensus       234 l~~~~~~~~~~~~~l~~~~l~~L~~  258 (259)
                      +++|  .+..+|..+.  .+++|++
T Consensus       179 L~~N--~l~~ip~~~~--~~~~L~~  199 (290)
T 1p9a_G          179 LQEN--SLYTIPKGFF--GSHLLPF  199 (290)
T ss_dssp             CCSS--CCCCCCTTTT--TTCCCSE
T ss_pred             CCCC--cCCccChhhc--ccccCCe
Confidence            9999  7888887653  4455553

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.77  E-value=1.8e-18  Score=151.30  Aligned_cols=176  Identities=20%  Similarity=0.203  Sum_probs=142.7

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecC-CCCcccchh-
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHG-SSIYQLPVE-  154 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~-~~i~~lp~~-  154 (259)
                      ..+++..|.++++|++|++++|.++.+|. .+..+++|++|++++|.+.. + ..+..+++|++|++++ +.+..+|.. 
T Consensus       112 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~  191 (452)
T 3zyi_A          112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA  191 (452)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT
T ss_pred             CCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhh
Confidence            45676778899999999999999998776 48889999999999999988 4 5788999999999998 467777764 


Q ss_pred             hccCCcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecccccCC-ccccc-ccccce
Q 039152          155 VGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRLKD-QDTVQ-LWGIEE  231 (259)
Q Consensus       155 i~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~-~~~~~-l~~L~~  231 (259)
                      +..+++|++|++++| .+..+|....+++|+.|++++|.++.+ |..+..+++|+.|++.+|..... +..+. +++|+.
T Consensus       192 ~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  270 (452)
T 3zyi_A          192 FEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE  270 (452)
T ss_dssp             TTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             ccCCCCCCEEECCCC-cccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCE
Confidence            889999999999985 556677778899999999999999766 56677899999999998844433 33333 889999


Q ss_pred             eeccccchhhhhhhhhhhhcccccccCC
Q 039152          232 LSLAELLDHIKNFVNKLVKVGSSQLKYL  259 (259)
Q Consensus       232 L~l~~~~~~~~~~~~~l~~~~l~~L~~L  259 (259)
                      |++++|  .+..++... +..+++|+.|
T Consensus       271 L~L~~N--~l~~~~~~~-~~~l~~L~~L  295 (452)
T 3zyi_A          271 LNLAHN--NLSSLPHDL-FTPLRYLVEL  295 (452)
T ss_dssp             EECCSS--CCSCCCTTS-STTCTTCCEE
T ss_pred             EECCCC--cCCccChHH-hccccCCCEE
Confidence            999999  777777654 5567776643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.77  E-value=1.7e-18  Score=142.95  Aligned_cols=156  Identities=23%  Similarity=0.226  Sum_probs=135.0

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccch-hhcc
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPV-EVGQ  157 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~  157 (259)
                      ..+++..|.++++|++|++++|.++.++.. +.+++|++|++++|.++. |..+..+++|++|++++|+++.+|. .+..
T Consensus        44 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~  122 (290)
T 1p9a_G           44 YTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG  122 (290)
T ss_dssp             SEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT
T ss_pred             CccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcC
Confidence            456666788999999999999999987764 789999999999999998 7788999999999999999998875 5899


Q ss_pred             CCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCCC-cCCCCCCeEEeecccccCCccccc-ccccceee
Q 039152          158 LTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRGG-LFLEKPERIDLDANVRLKDQDTVQ-LWGIEELS  233 (259)
Q Consensus       158 l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~~-~~l~~L~~L~l~~~~~~~~~~~~~-l~~L~~L~  233 (259)
                      +++|++|++++| .+..+|..  ..+++|+.|++++|.++.+|..+ ..+++|+.|++++|.....+..+. ..+|+.++
T Consensus       123 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~  201 (290)
T 1p9a_G          123 LGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF  201 (290)
T ss_dssp             CTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEE
T ss_pred             CCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEE
Confidence            999999999995 55666665  68899999999999999998865 579999999999996666655544 88999999


Q ss_pred             cccc
Q 039152          234 LAEL  237 (259)
Q Consensus       234 l~~~  237 (259)
                      +.++
T Consensus       202 L~~N  205 (290)
T 1p9a_G          202 LHGN  205 (290)
T ss_dssp             CCSC
T ss_pred             eCCC
Confidence            9876

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.77  E-value=2.1e-18  Score=155.91  Aligned_cols=117  Identities=19%  Similarity=0.280  Sum_probs=79.8

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCc-hhhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccchh-h
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLP-SSIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPVE-V  155 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-i  155 (259)
                      ..+|+.+|.++++|++|++++|.+..++ ..++.+++|++|++++|.+.. + ..++.+++|++|++++|.+..+|.. +
T Consensus        64 ~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~  143 (597)
T 3oja_B           64 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF  143 (597)
T ss_dssp             SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHh
Confidence            5677777777888888888887777554 367777778888887777777 3 4567777777777777777777766 4


Q ss_pred             ccCCcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCCc
Q 039152          156 GQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDANT  196 (259)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~  196 (259)
                      +.+++|++|++++|......|.. +.+++|++|++++|.++.
T Consensus       144 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          144 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             ccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence            67777777777775433333322 556666666666665543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.77  E-value=5.2e-18  Score=157.62  Aligned_cols=174  Identities=24%  Similarity=0.223  Sum_probs=119.8

Q ss_pred             cccHHHHhCCCCccEEEcCCCCCC-CCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCc-ccchhhc
Q 039152           81 AIPQNLLRSMLQVRVLDLTDMNLL-SLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIY-QLPVEVG  156 (259)
Q Consensus        81 ~l~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~-~lp~~i~  156 (259)
                      .+|.. |..+++|++|++++|.+. .+|..++.+++|++|++++|.+.+  |..++.+++|++|++++|.+. .+|..++
T Consensus       457 ~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~  535 (768)
T 3rgz_A          457 EIPQE-LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG  535 (768)
T ss_dssp             CCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred             cCCHH-HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence            44444 456777777777777776 567777777777777777777775  667777777777777777776 6677777


Q ss_pred             cCCcCCEEecCCCCCceeeCCC----------------------------------------------------------
Q 039152          157 QLTQLRSLDLRHCSNLQVIPLN----------------------------------------------------------  178 (259)
Q Consensus       157 ~l~~L~~L~l~~~~~~~~lp~~----------------------------------------------------------  178 (259)
                      .+++|+.|++++|...+.+|..                                                          
T Consensus       536 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l  615 (768)
T 3rgz_A          536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI  615 (768)
T ss_dssp             GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCT
T ss_pred             CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccc
Confidence            7777777777776544344421                                                          


Q ss_pred             -------------CCCCCCcEEEeeccCCC-ccCCCCcCCCCCCeEEeeccc-ccCCccccc-ccccceeeccccchhhh
Q 039152          179 -------------KHLPNLTSLELEVNDAN-TLPRGGLFLEKPERIDLDANV-RLKDQDTVQ-LWGIEELSLAELLDHIK  242 (259)
Q Consensus       179 -------------~~l~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~-~~~~~~~~~-l~~L~~L~l~~~~~~~~  242 (259)
                                   +.+++|+.|++++|.++ .+|..++.+++|+.|++++|. ....|..+. +++|+.|++++| ....
T Consensus       616 ~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N-~l~g  694 (768)
T 3rgz_A          616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN-KLDG  694 (768)
T ss_dssp             TSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS-CCEE
T ss_pred             ccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCC-cccC
Confidence                         23466778888888874 777777888888888888773 334455555 788888888888 4445


Q ss_pred             hhhhhhhhcccccccC
Q 039152          243 NFVNKLVKVGSSQLKY  258 (259)
Q Consensus       243 ~~~~~l~~~~l~~L~~  258 (259)
                      .+|..+.  .++.|++
T Consensus       695 ~ip~~l~--~l~~L~~  708 (768)
T 3rgz_A          695 RIPQAMS--ALTMLTE  708 (768)
T ss_dssp             CCCGGGG--GCCCCSE
T ss_pred             cCChHHh--CCCCCCE
Confidence            6666433  5666554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.76  E-value=1.2e-17  Score=136.43  Aligned_cols=172  Identities=30%  Similarity=0.374  Sum_probs=131.4

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC-ch-hhhCCCCCcEEEecCCCCcccchh-h
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD-MA-VISDLKKLEILCLHGSSIYQLPVE-V  155 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~~-~~~~l~~L~~L~l~~~~i~~lp~~-i  155 (259)
                      ..+|..+   .++++.|++++|.+..+|. .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+..+|.. +
T Consensus        29 ~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  105 (270)
T 2o6q_A           29 TAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVF  105 (270)
T ss_dssp             SSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHc
Confidence            4556543   3578899999998887765 68889999999999998888 43 457889999999999998887765 6


Q ss_pred             ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeecccccCCcc-ccc-ccccc
Q 039152          156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDANVRLKDQD-TVQ-LWGIE  230 (259)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~-~~~-l~~L~  230 (259)
                      ..+++|++|++++| .+..++..  ..+++|++|++++|.++.+|.. +..+++|+.|++++|.....+. .+. +++|+
T Consensus       106 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  184 (270)
T 2o6q_A          106 DQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK  184 (270)
T ss_dssp             TTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             ccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcC
Confidence            78899999999885 44555543  6888999999999998888765 5688999999999885544433 233 88999


Q ss_pred             eeeccccchhhhhhhhhhhhcccccccC
Q 039152          231 ELSLAELLDHIKNFVNKLVKVGSSQLKY  258 (259)
Q Consensus       231 ~L~l~~~~~~~~~~~~~l~~~~l~~L~~  258 (259)
                      .|++++|  .+..++... +..+++|++
T Consensus       185 ~L~L~~N--~l~~~~~~~-~~~l~~L~~  209 (270)
T 2o6q_A          185 TLKLDNN--QLKRVPEGA-FDSLEKLKM  209 (270)
T ss_dssp             EEECCSS--CCSCCCTTT-TTTCTTCCE
T ss_pred             EEECCCC--cCCcCCHHH-hccccCCCE
Confidence            9999988  677777653 446666664

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=2.3e-18  Score=134.15  Aligned_cols=148  Identities=19%  Similarity=0.234  Sum_probs=126.1

Q ss_pred             hCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcc-cchhhccCCcCCEEec
Q 039152           88 RSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQ-LPVEVGQLTQLRSLDL  166 (259)
Q Consensus        88 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~l  166 (259)
                      ..+++|+.|++++|.+..+| .+..+++|++|++++|.+..++.++.+++|++|++++|.+.. .|..+..+++|++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            45678999999999999888 689999999999999988777789999999999999999984 6778999999999999


Q ss_pred             CCCCCceeeCCC-CCCCCCcEEEeeccC-CCccCCCCcCCCCCCeEEeecccccCCcccccccccceeecccc
Q 039152          167 RHCSNLQVIPLN-KHLPNLTSLELEVND-ANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAEL  237 (259)
Q Consensus       167 ~~~~~~~~lp~~-~~l~~L~~L~l~~~~-~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~  237 (259)
                      ++|......|.. ..+++|++|++++|. ++.+| .+..+++|+.|++++|.....+....+++|+.|+++++
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCc
Confidence            997654433433 789999999999998 88887 56899999999999996555554444999999999988

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.76  E-value=4.3e-18  Score=141.69  Aligned_cols=163  Identities=17%  Similarity=0.211  Sum_probs=137.7

Q ss_pred             hCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecC
Q 039152           88 RSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLR  167 (259)
Q Consensus        88 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~  167 (259)
                      ..+++|+.|+++++.+..+| .+..+++|++|++++|.+...+.+..+++|++|++++|.+..+| .+..+++|++|+++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT  115 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred             HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECC
Confidence            46779999999999999887 58999999999999999999333999999999999999999886 68999999999999


Q ss_pred             CCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeeccccchhhhhhhhh
Q 039152          168 HCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFVNK  247 (259)
Q Consensus       168 ~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  247 (259)
                      +|. +..++....+++|+.|++++|.++.+|. +..+++|+.|++++|.....+....+++|+.|++++|  .+..++. 
T Consensus       116 ~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n--~l~~~~~-  190 (308)
T 1h6u_A          116 STQ-ITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN--KISDISP-  190 (308)
T ss_dssp             TSC-CCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS--CCCCCGG-
T ss_pred             CCC-CCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCC--ccCcChh-
Confidence            964 5556656899999999999999998876 6899999999999995555544444999999999999  7777765 


Q ss_pred             hhhcccccccCC
Q 039152          248 LVKVGSSQLKYL  259 (259)
Q Consensus       248 l~~~~l~~L~~L  259 (259)
                        ...+++|++|
T Consensus       191 --l~~l~~L~~L  200 (308)
T 1h6u_A          191 --LASLPNLIEV  200 (308)
T ss_dssp             --GGGCTTCCEE
T ss_pred             --hcCCCCCCEE
Confidence              3466766653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.76  E-value=8.5e-18  Score=144.24  Aligned_cols=66  Identities=17%  Similarity=0.202  Sum_probs=35.1

Q ss_pred             CCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecccccCCccccc-ccccceeeccccchhhhhhhhh
Q 039152          180 HLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRLKDQDTVQ-LWGIEELSLAELLDHIKNFVNK  247 (259)
Q Consensus       180 ~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~  247 (259)
                      .+++|+.|++++|.++.+ |..+..+++|+.|++++|.....+.... +++|+.|++++|  .+..+|..
T Consensus       246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~  313 (390)
T 3o6n_A          246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN--HLLHVERN  313 (390)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS--CCCCCGGG
T ss_pred             CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC--cceecCcc
Confidence            345566666666666533 4445566666666666653333322222 556666666666  44455543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.76  E-value=5.4e-19  Score=160.92  Aligned_cols=163  Identities=16%  Similarity=0.200  Sum_probs=126.2

Q ss_pred             cccHHHHhCCCCccEEEcCCCCCCC------------------Cchhhc--CCCCCcEEEecCCCCCC--chhhhCCCCC
Q 039152           81 AIPQNLLRSMLQVRVLDLTDMNLLS------------------LPSSIG--LLTNLHTLCLYSCILKD--MAVISDLKKL  138 (259)
Q Consensus        81 ~l~~~~~~~l~~L~~L~l~~~~~~~------------------lp~~i~--~l~~L~~L~l~~~~~~~--~~~~~~l~~L  138 (259)
                      .+|.. |.++++|++|++++|.++.                  +|..++  ++++|++|++++|.+.+  |..++.+++|
T Consensus       197 ~ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  275 (636)
T 4eco_A          197 FVSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM  275 (636)
T ss_dssp             EECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred             cCCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence            37776 5789999999999999887                  888888  89999999999998776  7788899999


Q ss_pred             cEEEecCCC-Cc--ccchhhccC------CcCCEEecCCCCCceeeCC--C-CCCCCCcEEEeeccCCC-ccCCCCcCCC
Q 039152          139 EILCLHGSS-IY--QLPVEVGQL------TQLRSLDLRHCSNLQVIPL--N-KHLPNLTSLELEVNDAN-TLPRGGLFLE  205 (259)
Q Consensus       139 ~~L~l~~~~-i~--~lp~~i~~l------~~L~~L~l~~~~~~~~lp~--~-~~l~~L~~L~l~~~~~~-~~p~~~~~l~  205 (259)
                      ++|++++|+ ++  .+|..++.+      ++|++|++++|... .+|.  . +++++|++|++++|.++ .+| .++.++
T Consensus       276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~  353 (636)
T 4eco_A          276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI  353 (636)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred             CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence            999999987 77  488888776      88888888885544 7777  3 78888888888888886 777 667777


Q ss_pred             CCCeEEeecccccCCccccc-ccc-cceeeccccchhhhhhhhhh
Q 039152          206 KPERIDLDANVRLKDQDTVQ-LWG-IEELSLAELLDHIKNFVNKL  248 (259)
Q Consensus       206 ~L~~L~l~~~~~~~~~~~~~-l~~-L~~L~l~~~~~~~~~~~~~l  248 (259)
                      +|+.|++++|.....+..+. +++ |+.|++++|  .+..+|..+
T Consensus       354 ~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N--~l~~lp~~~  396 (636)
T 4eco_A          354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHN--KLKYIPNIF  396 (636)
T ss_dssp             EESEEECCSSEEEECCTTSEEECTTCCEEECCSS--CCSSCCSCC
T ss_pred             CCCEEECCCCccccccHhhhhhcccCcEEEccCC--cCcccchhh
Confidence            78888877774444444443 666 777777777  455666543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.76  E-value=6.5e-18  Score=152.78  Aligned_cols=74  Identities=16%  Similarity=0.181  Sum_probs=40.5

Q ss_pred             CCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecccccCCccccc-ccccceeeccccchhhhhhhhhhhhccccccc
Q 039152          180 HLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRLKDQDTVQ-LWGIEELSLAELLDHIKNFVNKLVKVGSSQLK  257 (259)
Q Consensus       180 ~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~  257 (259)
                      .+++|+.|++++|.++.+ |..++.+++|+.|++++|.....+..+. +++|+.|++++|  .+..+|..+.  .+++|+
T Consensus       252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N--~l~~i~~~~~--~l~~L~  327 (597)
T 3oja_B          252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN--HLLHVERNQP--QFDRLE  327 (597)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS--CCCCCGGGHH--HHTTCS
T ss_pred             cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCC--CCCccCcccc--cCCCCC
Confidence            445666666666666533 4455566666666666663333333333 566666666666  4445554432  444444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=4.7e-18  Score=140.39  Aligned_cols=147  Identities=27%  Similarity=0.263  Sum_probs=122.5

Q ss_pred             HhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEec
Q 039152           87 LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDL  166 (259)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l  166 (259)
                      +..+++|++|++++|.++.++. ++.+++|++|++++|.++.++.++.+++|++|++++|++..++ .+..+++|++|++
T Consensus        64 ~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l  141 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYL  141 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEEC
T ss_pred             HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEc
Confidence            5678999999999999988877 8889999999999999888667889999999999999988774 6888999999999


Q ss_pred             CCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeecccc
Q 039152          167 RHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAEL  237 (259)
Q Consensus       167 ~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~  237 (259)
                      ++| .+..++....+++|+.|++++|.++.++. +..+++|+.|++++|.....+....+++|+.|+++++
T Consensus       142 ~~n-~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          142 GNN-KITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ  210 (291)
T ss_dssp             CSS-CCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEE
T ss_pred             cCC-cCCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCC
Confidence            985 44455544788999999999999987766 6889999999999885555454444899999999988

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.76  E-value=1.8e-17  Score=136.29  Aligned_cols=157  Identities=25%  Similarity=0.296  Sum_probs=133.5

Q ss_pred             ccccHHHHhCCCCccEEEcCCCC-CCCC-chhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMN-LLSL-PSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE-  154 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~-~~~l-p~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-  154 (259)
                      ..+++..|.++++|++|++++|. +..+ |..+..+++|++|++++|.+..  +..+..+++|++|++++|.+..+|.. 
T Consensus        69 ~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  148 (285)
T 1ozn_A           69 ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT  148 (285)
T ss_dssp             CEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             ceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhH
Confidence            45555567899999999999997 8876 6679999999999999999988  56788999999999999999988765 


Q ss_pred             hccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecccccCCccc-cc-cccc
Q 039152          155 VGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRLKDQDT-VQ-LWGI  229 (259)
Q Consensus       155 i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~~-~~-l~~L  229 (259)
                      +..+++|++|++++| .+..+|..  ..+++|+.|++++|.++.+ |..+..+++|+.|++++|.....+.. +. +++|
T Consensus       149 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  227 (285)
T 1ozn_A          149 FRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL  227 (285)
T ss_dssp             TTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred             hccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCccc
Confidence            889999999999995 55666654  7899999999999999765 77888999999999999955554432 33 9999


Q ss_pred             ceeecccc
Q 039152          230 EELSLAEL  237 (259)
Q Consensus       230 ~~L~l~~~  237 (259)
                      +.|+++++
T Consensus       228 ~~L~l~~N  235 (285)
T 1ozn_A          228 QYLRLNDN  235 (285)
T ss_dssp             CEEECCSS
T ss_pred             CEEeccCC
Confidence            99999987

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.76  E-value=1.5e-18  Score=162.14  Aligned_cols=160  Identities=17%  Similarity=0.197  Sum_probs=102.9

Q ss_pred             ccHHHHhCCCCccEEEcCCCCCCC------------------Cchhhc--CCCCCcEEEecCCCCCC--chhhhCCCCCc
Q 039152           82 IPQNLLRSMLQVRVLDLTDMNLLS------------------LPSSIG--LLTNLHTLCLYSCILKD--MAVISDLKKLE  139 (259)
Q Consensus        82 l~~~~~~~l~~L~~L~l~~~~~~~------------------lp~~i~--~l~~L~~L~l~~~~~~~--~~~~~~l~~L~  139 (259)
                      +|.. |.++++|++|++++|.++.                  +|..++  ++++|++|++++|.+.+  |..++.+++|+
T Consensus       440 IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~  518 (876)
T 4ecn_A          440 ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ  518 (876)
T ss_dssp             ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred             hhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence            6665 4677777777777777776                  677666  77777777777777655  66677777777


Q ss_pred             EEEecCCC-Cc--ccchhhccCC-------cCCEEecCCCCCceeeCC--C-CCCCCCcEEEeeccCCCccCCCCcCCCC
Q 039152          140 ILCLHGSS-IY--QLPVEVGQLT-------QLRSLDLRHCSNLQVIPL--N-KHLPNLTSLELEVNDANTLPRGGLFLEK  206 (259)
Q Consensus       140 ~L~l~~~~-i~--~lp~~i~~l~-------~L~~L~l~~~~~~~~lp~--~-~~l~~L~~L~l~~~~~~~~p~~~~~l~~  206 (259)
                      +|++++|+ +.  .+|..++.++       +|++|++++|... .+|.  . +++++|+.|++++|.++.+| .++.+++
T Consensus       519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~  596 (876)
T 4ecn_A          519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVK  596 (876)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSE
T ss_pred             EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCc
Confidence            77777776 65  3666666555       6777777764433 6666  2 66666667777666666666 5566666


Q ss_pred             CCeEEeecccccCCccccc-ccc-cceeeccccchhhhhhhh
Q 039152          207 PERIDLDANVRLKDQDTVQ-LWG-IEELSLAELLDHIKNFVN  246 (259)
Q Consensus       207 L~~L~l~~~~~~~~~~~~~-l~~-L~~L~l~~~~~~~~~~~~  246 (259)
                      |+.|++++|.....+..+. +++ |+.|++++|  .+..+|.
T Consensus       597 L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N--~L~~lp~  636 (876)
T 4ecn_A          597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN--KLKYIPN  636 (876)
T ss_dssp             ESEEECCSSCCSCCCTTSCEECTTCCEEECCSS--CCCSCCS
T ss_pred             ceEEECcCCccccchHHHhhccccCCEEECcCC--CCCcCch
Confidence            6666666664334443333 555 666666666  3445554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.75  E-value=1.4e-18  Score=142.20  Aligned_cols=114  Identities=24%  Similarity=0.346  Sum_probs=50.8

Q ss_pred             cHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccch-hhccC
Q 039152           83 PQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPV-EVGQL  158 (259)
Q Consensus        83 ~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l  158 (259)
                      +...|.++++|++|++++|.+..++. .+..+++|++|++++|.++.  +..+..+++|++|++++|.+..++. .++.+
T Consensus        44 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  123 (276)
T 2z62_A           44 GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL  123 (276)
T ss_dssp             CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTC
T ss_pred             CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccC
Confidence            33334445555555555554443322 34445555555555555444  2334444555555555544444333 24444


Q ss_pred             CcCCEEecCCCCCce-eeCCC-CCCCCCcEEEeeccCCCc
Q 039152          159 TQLRSLDLRHCSNLQ-VIPLN-KHLPNLTSLELEVNDANT  196 (259)
Q Consensus       159 ~~L~~L~l~~~~~~~-~lp~~-~~l~~L~~L~l~~~~~~~  196 (259)
                      ++|++|++++|.... .+|.. ..+++|++|++++|.++.
T Consensus       124 ~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A          124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  163 (276)
T ss_dssp             TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             CCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence            445555554432211 12222 344444444444444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.75  E-value=1.2e-18  Score=145.30  Aligned_cols=171  Identities=14%  Similarity=0.116  Sum_probs=109.0

Q ss_pred             cccHHHH-hCCCCccEEEcCCCCCCCCchhhcCC-----CCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcc--
Q 039152           81 AIPQNLL-RSMLQVRVLDLTDMNLLSLPSSIGLL-----TNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQ--  150 (259)
Q Consensus        81 ~l~~~~~-~~l~~L~~L~l~~~~~~~lp~~i~~l-----~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~--  150 (259)
                      .+|..+| ..+++|++|++++|.++.+|..++.+     ++|++|++++|.+..  +..++.+++|++|++++|++..  
T Consensus       110 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  189 (312)
T 1wwl_A          110 TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER  189 (312)
T ss_dssp             CCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHH
T ss_pred             hhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcch
Confidence            4555443 56777777777777777666666655     677777777777766  3567777777777777776542  


Q ss_pred             -cchhh--ccCCcCCEEecCCCCCceeeCCC-----CCCCCCcEEEeeccCCCccC--CCCcCCCCCCeEEeecccccCC
Q 039152          151 -LPVEV--GQLTQLRSLDLRHCSNLQVIPLN-----KHLPNLTSLELEVNDANTLP--RGGLFLEKPERIDLDANVRLKD  220 (259)
Q Consensus       151 -lp~~i--~~l~~L~~L~l~~~~~~~~lp~~-----~~l~~L~~L~l~~~~~~~~p--~~~~~l~~L~~L~l~~~~~~~~  220 (259)
                       +|..+  +.+++|++|++++|. +..++..     ..+++|++|++++|.++..+  ..+..+++|+.|++++|.....
T Consensus       190 ~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i  268 (312)
T 1wwl_A          190 GLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV  268 (312)
T ss_dssp             HHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC
T ss_pred             HHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh
Confidence             34444  667777777777743 3322211     45677778888777776543  2334567788888877754454


Q ss_pred             cccccccccceeeccccchhhhhhhhhhhhcccccccC
Q 039152          221 QDTVQLWGIEELSLAELLDHIKNFVNKLVKVGSSQLKY  258 (259)
Q Consensus       221 ~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~  258 (259)
                      +..+. ++|+.|++++|  .+..+|.   ...+++|++
T Consensus       269 p~~~~-~~L~~L~Ls~N--~l~~~p~---~~~l~~L~~  300 (312)
T 1wwl_A          269 PKGLP-AKLSVLDLSYN--RLDRNPS---PDELPQVGN  300 (312)
T ss_dssp             CSSCC-SEEEEEECCSS--CCCSCCC---TTTSCEEEE
T ss_pred             hhhcc-CCceEEECCCC--CCCCChh---HhhCCCCCE
Confidence            54444 77788888777  6666654   335666654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.75  E-value=1.8e-17  Score=139.87  Aligned_cols=163  Identities=19%  Similarity=0.250  Sum_probs=86.2

Q ss_pred             hCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecC
Q 039152           88 RSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLR  167 (259)
Q Consensus        88 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~  167 (259)
                      ..+++|++|++++|.++.+|. +..+++|++|++++|.++..+.+..+++|++|++++|.+..+|. +..+++|++|+++
T Consensus        63 ~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~  140 (347)
T 4fmz_A           63 EYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLG  140 (347)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECT
T ss_pred             hhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECC
Confidence            455555566665555555544 55555555555555555554445555555555555555555544 5555555555555


Q ss_pred             CCCCceeeCCCCC----------------------CCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCccccc
Q 039152          168 HCSNLQVIPLNKH----------------------LPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQ  225 (259)
Q Consensus       168 ~~~~~~~lp~~~~----------------------l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~  225 (259)
                      +|......+....                      +++|+.|++++|.++.++. +..+++|+.|++.+|.....+....
T Consensus       141 ~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~  219 (347)
T 4fmz_A          141 ANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVAN  219 (347)
T ss_dssp             TCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGG
T ss_pred             CCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCchhhc
Confidence            5444443333344                      4455555555555444443 3445555555555543333222223


Q ss_pred             ccccceeeccccchhhhhhhhhhhhcccccccC
Q 039152          226 LWGIEELSLAELLDHIKNFVNKLVKVGSSQLKY  258 (259)
Q Consensus       226 l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~  258 (259)
                      +++|+.|++++|  .+..++.   ...+++|++
T Consensus       220 ~~~L~~L~l~~n--~l~~~~~---~~~l~~L~~  247 (347)
T 4fmz_A          220 MTRLNSLKIGNN--KITDLSP---LANLSQLTW  247 (347)
T ss_dssp             CTTCCEEECCSS--CCCCCGG---GTTCTTCCE
T ss_pred             CCcCCEEEccCC--ccCCCcc---hhcCCCCCE
Confidence            667777777777  5555554   335555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.75  E-value=2.1e-17  Score=133.52  Aligned_cols=154  Identities=25%  Similarity=0.309  Sum_probs=129.6

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-h
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE-V  155 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i  155 (259)
                      ..+|..+   .+.++.|++++|.+..++. .++.+++|++|++++|.++.  +..+..+++|++|++++|.+..+|.. +
T Consensus        27 ~~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  103 (251)
T 3m19_A           27 DSVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVF  103 (251)
T ss_dssp             SSCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             cccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHh
Confidence            4566654   3689999999999997654 68999999999999999998  45689999999999999999988765 7


Q ss_pred             ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCC-CCcCCCCCCeEEeecccccCCcc-ccc-ccccc
Q 039152          156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPR-GGLFLEKPERIDLDANVRLKDQD-TVQ-LWGIE  230 (259)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~~-~~~-l~~L~  230 (259)
                      ..+++|++|++++| .+..+|..  ..+++|+.|++++|.++.+|. .+..+++|+.|++++|.....+. .+. +++|+
T Consensus       104 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  182 (251)
T 3m19_A          104 DHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ  182 (251)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             cccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence            89999999999995 55666664  789999999999999998887 47789999999999995555433 333 89999


Q ss_pred             eeecccc
Q 039152          231 ELSLAEL  237 (259)
Q Consensus       231 ~L~l~~~  237 (259)
                      .|++++|
T Consensus       183 ~L~l~~N  189 (251)
T 3m19_A          183 TITLFGN  189 (251)
T ss_dssp             EEECCSC
T ss_pred             EEEeeCC
Confidence            9999988

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.75  E-value=4.6e-18  Score=144.06  Aligned_cols=173  Identities=20%  Similarity=0.194  Sum_probs=142.2

Q ss_pred             cccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-
Q 039152           79 FFAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE-  154 (259)
Q Consensus        79 l~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-  154 (259)
                      +..+|.+++   ++|++|++++|.++.+|. .+.++++|++|++++|.++.  +..++.+++|++|++++|.+..+|.. 
T Consensus        43 l~~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  119 (353)
T 2z80_A           43 LNSIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSW  119 (353)
T ss_dssp             CSSCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHH
T ss_pred             ccccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhH
Confidence            356777653   589999999999998766 79999999999999999998  46799999999999999999999887 


Q ss_pred             hccCCcCCEEecCCCCCceeeCC-C--CCCCCCcEEEeeccC-CCcc-CCCCcCCCCCCeEEeecccccCC-ccccc-cc
Q 039152          155 VGQLTQLRSLDLRHCSNLQVIPL-N--KHLPNLTSLELEVND-ANTL-PRGGLFLEKPERIDLDANVRLKD-QDTVQ-LW  227 (259)
Q Consensus       155 i~~l~~L~~L~l~~~~~~~~lp~-~--~~l~~L~~L~l~~~~-~~~~-p~~~~~l~~L~~L~l~~~~~~~~-~~~~~-l~  227 (259)
                      ++.+++|++|++++| .+..+|. .  ..+++|++|++++|. ++.+ |..+..+++|+.|++++|..... +..+. ++
T Consensus       120 ~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~  198 (353)
T 2z80_A          120 FKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ  198 (353)
T ss_dssp             HTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred             hCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccc
Confidence            889999999999995 5567776 2  789999999999994 7766 45678999999999999844433 44444 89


Q ss_pred             ccceeeccccchhhhhhhhhhhhcccccccC
Q 039152          228 GIEELSLAELLDHIKNFVNKLVKVGSSQLKY  258 (259)
Q Consensus       228 ~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~  258 (259)
                      +|+.|+++++  .+..++... ...+++|+.
T Consensus       199 ~L~~L~l~~n--~l~~~~~~~-~~~~~~L~~  226 (353)
T 2z80_A          199 NVSHLILHMK--QHILLLEIF-VDVTSSVEC  226 (353)
T ss_dssp             EEEEEEEECS--CSTTHHHHH-HHHTTTEEE
T ss_pred             cCCeecCCCC--ccccchhhh-hhhcccccE
Confidence            9999999999  677777654 445666654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.74  E-value=1.6e-17  Score=154.30  Aligned_cols=169  Identities=22%  Similarity=0.167  Sum_probs=106.9

Q ss_pred             HhCCCCccEEEcCCCCCC-CCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCc-ccchhhccCCcCC
Q 039152           87 LRSMLQVRVLDLTDMNLL-SLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIY-QLPVEVGQLTQLR  162 (259)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~  162 (259)
                      |.++++|++|++++|.+. .+|..+..+++|++|++++|.+.+  |..++.+++|++|++++|++. .+|..++.+++|+
T Consensus       438 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  517 (768)
T 3rgz_A          438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA  517 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC
Confidence            456666666666666666 456666666667777777776664  566666777777777777666 5666677777777


Q ss_pred             EEecCCCCCceeeCCC-CCCCCCcEEEeeccCCC-ccCCC----------------------------------------
Q 039152          163 SLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDAN-TLPRG----------------------------------------  200 (259)
Q Consensus       163 ~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~-~~p~~----------------------------------------  200 (259)
                      +|++++|...+.+|.. +.+++|+.|++++|.++ .+|..                                        
T Consensus       518 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  597 (768)
T 3rgz_A          518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ  597 (768)
T ss_dssp             EEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECT
T ss_pred             EEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccc
Confidence            7777776555566654 66677777777776653 44432                                        


Q ss_pred             ------------------------------CcCCCCCCeEEeecc-cccCCccccc-ccccceeeccccchhhhhhhhhh
Q 039152          201 ------------------------------GLFLEKPERIDLDAN-VRLKDQDTVQ-LWGIEELSLAELLDHIKNFVNKL  248 (259)
Q Consensus       201 ------------------------------~~~l~~L~~L~l~~~-~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~l  248 (259)
                                                    ++.+++|+.|++++| .....|..+. +++|+.|++++| .....+|..+
T Consensus       598 ~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~ip~~l  676 (768)
T 3rgz_A          598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN-DISGSIPDEV  676 (768)
T ss_dssp             TCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGG
T ss_pred             cccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC-ccCCCCChHH
Confidence                                          223456667777766 3334454444 777888888877 4445666654


Q ss_pred             hhcccccccC
Q 039152          249 VKVGSSQLKY  258 (259)
Q Consensus       249 ~~~~l~~L~~  258 (259)
                      .  .+++|+.
T Consensus       677 ~--~L~~L~~  684 (768)
T 3rgz_A          677 G--DLRGLNI  684 (768)
T ss_dssp             G--GCTTCCE
T ss_pred             h--CCCCCCE
Confidence            3  6666654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.74  E-value=5.3e-17  Score=132.70  Aligned_cols=154  Identities=31%  Similarity=0.300  Sum_probs=119.0

Q ss_pred             HhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccchh-hccCCcCC
Q 039152           87 LRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLR  162 (259)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~  162 (259)
                      +..+++|++|++++|.++.++. .++.+++|++|++++|.++. + ..++.+++|++|++++|.+..+|.. ++.+++|+
T Consensus        81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  160 (272)
T 3rfs_A           81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT  160 (272)
T ss_dssp             GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCC
Confidence            5788899999999998887665 46888999999999999888 4 4478889999999999988877765 67889999


Q ss_pred             EEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeecccccCCcccccccccceeeccccch
Q 039152          163 SLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLD  239 (259)
Q Consensus       163 ~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~  239 (259)
                      +|++++|. +..++..  ..+++|+.|++++|.++.+|.. +..+++|+.|++.+|....     .+++|+.|++..+ .
T Consensus       161 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-----~~~~l~~l~~~~n-~  233 (272)
T 3rfs_A          161 ELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-----TCPGIRYLSEWIN-K  233 (272)
T ss_dssp             EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-----CTTTTHHHHHHHH-H
T ss_pred             EEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-----cCcHHHHHHHHHH-h
Confidence            99999864 4455553  6788999999999998777654 5688999999998873221     2556777777766 4


Q ss_pred             hhhhhhhh
Q 039152          240 HIKNFVNK  247 (259)
Q Consensus       240 ~~~~~~~~  247 (259)
                      ....+|..
T Consensus       234 ~~g~ip~~  241 (272)
T 3rfs_A          234 HSGVVRNS  241 (272)
T ss_dssp             TGGGBBCT
T ss_pred             CCCcccCc
Confidence            45555554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.74  E-value=6e-18  Score=140.46  Aligned_cols=176  Identities=19%  Similarity=0.096  Sum_probs=103.2

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCC---chhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccch--
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSL---PSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPV--  153 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~l---p~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~--  153 (259)
                      ..+|.++|.++++|++|++++|.+..+   |..+..+++|++|++++|.+.. +..+..+++|++|++++|.+..++.  
T Consensus        41 ~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~  120 (306)
T 2z66_A           41 QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS  120 (306)
T ss_dssp             CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTT
T ss_pred             CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccch
Confidence            455666566666777777766666533   4555566667777777666666 5556666677777777666665543  


Q ss_pred             hhccCCcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCCc--cCCCCcCCCCCCeEEeecccccCC-ccccc-ccc
Q 039152          154 EVGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDANT--LPRGGLFLEKPERIDLDANVRLKD-QDTVQ-LWG  228 (259)
Q Consensus       154 ~i~~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~~-~~~~~-l~~  228 (259)
                      .+..+++|++|++++|......+.. ..+++|++|++++|.++.  +|..+..+++|+.|++++|..... +..+. +++
T Consensus       121 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  200 (306)
T 2z66_A          121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS  200 (306)
T ss_dssp             TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCC
Confidence            4666666777777664433333322 556666777776666643  566666666777777766633322 22222 666


Q ss_pred             cceeeccccchhhhhhhhhhhhcccccccC
Q 039152          229 IEELSLAELLDHIKNFVNKLVKVGSSQLKY  258 (259)
Q Consensus       229 L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~  258 (259)
                      |+.|++++|  .+..++... +..+++|++
T Consensus       201 L~~L~L~~N--~l~~~~~~~-~~~l~~L~~  227 (306)
T 2z66_A          201 LQVLNMSHN--NFFSLDTFP-YKCLNSLQV  227 (306)
T ss_dssp             CCEEECTTS--CCSBCCSGG-GTTCTTCCE
T ss_pred             CCEEECCCC--ccCccChhh-ccCcccCCE
Confidence            667777666  444444322 334444443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.74  E-value=1.6e-17  Score=139.35  Aligned_cols=173  Identities=17%  Similarity=0.219  Sum_probs=103.5

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCC-chhhcCCCCCcEEEecCCCCCC-c----------------------hhhhCC
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKD-M----------------------AVISDL  135 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~-~----------------------~~~~~l  135 (259)
                      ..+++..|.++++|++|++++|.+..+ |..++.+++|++|++++|.++. |                      ..+..+
T Consensus        65 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  144 (330)
T 1xku_A           65 TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL  144 (330)
T ss_dssp             CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTC
T ss_pred             CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCC
Confidence            344444456666666666666666644 5556666666666666665544 2                      234455


Q ss_pred             CCCcEEEecCCCCc---ccchhhccCCcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEE
Q 039152          136 KKLEILCLHGSSIY---QLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTL-PRGGLFLEKPERID  211 (259)
Q Consensus       136 ~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~  211 (259)
                      ++|++|++++|.+.   ..+..+..+++|++|++++| .+..+|.. -.++|+.|++++|.++.+ |..+..+++|+.|+
T Consensus       145 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  222 (330)
T 1xku_A          145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQG-LPPSLTELHLDGNKITKVDAASLKGLNNLAKLG  222 (330)
T ss_dssp             TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSS-CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEE
T ss_pred             ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcc-ccccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence            55555555555543   22334555566666666553 33444442 336777777777777655 45566788888888


Q ss_pred             eecccccCCc-ccc-cccccceeeccccchhhhhhhhhhhhcccccccC
Q 039152          212 LDANVRLKDQ-DTV-QLWGIEELSLAELLDHIKNFVNKLVKVGSSQLKY  258 (259)
Q Consensus       212 l~~~~~~~~~-~~~-~l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~  258 (259)
                      +++|.....+ ..+ .+++|+.|++++|  .+..+|..+  ..+++|++
T Consensus       223 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N--~l~~lp~~l--~~l~~L~~  267 (330)
T 1xku_A          223 LSFNSISAVDNGSLANTPHLRELHLNNN--KLVKVPGGL--ADHKYIQV  267 (330)
T ss_dssp             CCSSCCCEECTTTGGGSTTCCEEECCSS--CCSSCCTTT--TTCSSCCE
T ss_pred             CCCCcCceeChhhccCCCCCCEEECCCC--cCccCChhh--ccCCCcCE
Confidence            8887443332 223 3788888888888  666777654  36666664

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.73  E-value=1.2e-17  Score=149.16  Aligned_cols=157  Identities=18%  Similarity=0.168  Sum_probs=102.4

Q ss_pred             cccHHHHhCCCCccEEEcCCCCCCCCc-hhhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcc--cchhh
Q 039152           81 AIPQNLLRSMLQVRVLDLTDMNLLSLP-SSIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQ--LPVEV  155 (259)
Q Consensus        81 ~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~--lp~~i  155 (259)
                      .+++..|.++++|++|++++|.+..++ ..++.+++|++|++++|.+.+ + ..++.+++|++|++++|.+..  .|..+
T Consensus        40 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  119 (549)
T 2z81_A           40 YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF  119 (549)
T ss_dssp             EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSC
T ss_pred             ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhh
Confidence            344444567777777777777776543 456777777777777777766 3 347777777777777777663  35566


Q ss_pred             ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCC-ccCCCCcCCCCCCeEEeecccccCCccccc--ccccc
Q 039152          156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDAN-TLPRGGLFLEKPERIDLDANVRLKDQDTVQ--LWGIE  230 (259)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~--l~~L~  230 (259)
                      +++++|++|++++|...+.+|..  .++++|++|++++|.++ ..|..++.+++|+.|++..+.....+..+.  +++|+
T Consensus       120 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  199 (549)
T 2z81_A          120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR  199 (549)
T ss_dssp             TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBS
T ss_pred             hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhccccc
Confidence            77777777777776556666543  66777777777777765 356666677777777777664433332221  67777


Q ss_pred             eeecccc
Q 039152          231 ELSLAEL  237 (259)
Q Consensus       231 ~L~l~~~  237 (259)
                      .|+++++
T Consensus       200 ~L~L~~n  206 (549)
T 2z81_A          200 YLELRDT  206 (549)
T ss_dssp             EEEEESC
T ss_pred             EEEccCC
Confidence            7777777

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=2.9e-17  Score=135.63  Aligned_cols=126  Identities=24%  Similarity=0.247  Sum_probs=76.5

Q ss_pred             HhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEec
Q 039152           87 LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDL  166 (259)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l  166 (259)
                      +.++++|++|++++|.++.+|. +..+++|++|++++|.+...+.+..+++|++|++++|.+..+ ..+..+++|++|++
T Consensus        86 l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L  163 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSL  163 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEEC
T ss_pred             cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEc
Confidence            4566666666666666665544 566666666666666666655566666666666666666655 34666666666666


Q ss_pred             CCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeeccc
Q 039152          167 RHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANV  216 (259)
Q Consensus       167 ~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~  216 (259)
                      ++|. +..++....+++|+.|++++|.++.+|. +..+++|+.|++++|.
T Consensus       164 ~~N~-l~~~~~l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          164 EDNQ-ISDIVPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             CSSC-CCCCGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred             cCCc-cccchhhcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCc
Confidence            6643 3333334566666666666666666553 4566666666666663

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.73  E-value=8.7e-17  Score=129.83  Aligned_cols=138  Identities=30%  Similarity=0.359  Sum_probs=118.8

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccchh-h
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPVE-V  155 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-i  155 (259)
                      ..+++..|.++++|++|++++|.+..++. .+..+++|++|++++|.++. + ..+..+++|++|++++|.+..+|.. +
T Consensus        48 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  127 (251)
T 3m19_A           48 ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF  127 (251)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHh
Confidence            45666667899999999999999997654 58899999999999999998 4 5678999999999999999988876 6


Q ss_pred             ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCC-CCcCCCCCCeEEeeccccc
Q 039152          156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPR-GGLFLEKPERIDLDANVRL  218 (259)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~  218 (259)
                      ..+++|++|++++| .+..+|..  ..+++|++|++++|.++.+|. .+..+++|+.|++.+|...
T Consensus       128 ~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          128 DRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             ccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            88999999999995 55666663  789999999999999988776 5678999999999998443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.73  E-value=3.2e-17  Score=137.51  Aligned_cols=162  Identities=19%  Similarity=0.216  Sum_probs=129.3

Q ss_pred             cccHHHHhCCCCccEEEcCCCCCCCCch----------------------hhcCCCCCcEEEecCCCCCC----chhhhC
Q 039152           81 AIPQNLLRSMLQVRVLDLTDMNLLSLPS----------------------SIGLLTNLHTLCLYSCILKD----MAVISD  134 (259)
Q Consensus        81 ~l~~~~~~~l~~L~~L~l~~~~~~~lp~----------------------~i~~l~~L~~L~l~~~~~~~----~~~~~~  134 (259)
                      .+++..|.++++|++|++++|.++.+|.                      .+..+++|++|++++|.+..    +..+..
T Consensus        90 ~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  169 (330)
T 1xku_A           90 KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG  169 (330)
T ss_dssp             CBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG
T ss_pred             eeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccC
Confidence            4444446677777777777776654442                      36778899999999999863    577899


Q ss_pred             CCCCcEEEecCCCCcccchhhccCCcCCEEecCCCCCceeeC-CC-CCCCCCcEEEeeccCCCccCC-CCcCCCCCCeEE
Q 039152          135 LKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIP-LN-KHLPNLTSLELEVNDANTLPR-GGLFLEKPERID  211 (259)
Q Consensus       135 l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp-~~-~~l~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~  211 (259)
                      +++|++|++++|.+..+|..+.  ++|++|++++|. +..++ .. ..+++|+.|++++|.++.++. .+..+++|+.|+
T Consensus       170 l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  246 (330)
T 1xku_A          170 MKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH  246 (330)
T ss_dssp             CTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred             CCCcCEEECCCCccccCCcccc--ccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEE
Confidence            9999999999999999988765  899999999965 44443 33 889999999999999987765 677999999999


Q ss_pred             eecccccCCccccc-ccccceeeccccchhhhhhhhh
Q 039152          212 LDANVRLKDQDTVQ-LWGIEELSLAELLDHIKNFVNK  247 (259)
Q Consensus       212 l~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~  247 (259)
                      +++|.....+..+. +++|+.|++++|  .+..++..
T Consensus       247 L~~N~l~~lp~~l~~l~~L~~L~l~~N--~i~~~~~~  281 (330)
T 1xku_A          247 LNNNKLVKVPGGLADHKYIQVVYLHNN--NISAIGSN  281 (330)
T ss_dssp             CCSSCCSSCCTTTTTCSSCCEEECCSS--CCCCCCTT
T ss_pred             CCCCcCccCChhhccCCCcCEEECCCC--cCCccChh
Confidence            99996666655554 999999999999  77777754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.73  E-value=4e-17  Score=143.61  Aligned_cols=119  Identities=25%  Similarity=0.281  Sum_probs=73.5

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCC-chhhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCccc-chhh
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQL-PVEV  155 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~l-p~~i  155 (259)
                      ..+++..|.++++|++|++++|.+..+ |..+.++++|++|++++|.++. + ..++.+++|++|++++|.+..+ |..+
T Consensus        45 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~  124 (477)
T 2id5_A           45 KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF  124 (477)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHc
Confidence            345555566777777777777777654 5567777777777777777766 3 3456677777777777776644 3446


Q ss_pred             ccCCcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCCccC
Q 039152          156 GQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDANTLP  198 (259)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~~p  198 (259)
                      ..+++|++|++++|......+.. ..+++|+.|++++|.++.+|
T Consensus       125 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A          125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             cccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence            66777777777764333222222 45555555555555554443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.72  E-value=3.5e-17  Score=142.97  Aligned_cols=90  Identities=27%  Similarity=0.425  Sum_probs=62.6

Q ss_pred             cccHHHHhCCCCccEEEcCCCCCCCC-chhhcCCCCCcEEEecCCCCCC--chh--hhCCCCCcEEEecCCCCccc-chh
Q 039152           81 AIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKD--MAV--ISDLKKLEILCLHGSSIYQL-PVE  154 (259)
Q Consensus        81 ~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~--~~~--~~~l~~L~~L~l~~~~i~~l-p~~  154 (259)
                      .+++..|.++++|++|++++|.+..+ |..++++++|++|++++|.+++  +..  ++.+++|++|++++|.+..+ |..
T Consensus        69 ~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  148 (455)
T 3v47_A           69 VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS  148 (455)
T ss_dssp             EECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG
T ss_pred             eECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccc
Confidence            55566677778888888888777743 6667777777777777777776  333  67777777777777777655 444


Q ss_pred             -hccCCcCCEEecCCCC
Q 039152          155 -VGQLTQLRSLDLRHCS  170 (259)
Q Consensus       155 -i~~l~~L~~L~l~~~~  170 (259)
                       +..+++|++|++++|.
T Consensus       149 ~~~~l~~L~~L~L~~n~  165 (455)
T 3v47_A          149 FFLNMRRFHVLDLTFNK  165 (455)
T ss_dssp             GGGGCTTCCEEECTTCC
T ss_pred             ccCCCCcccEEeCCCCc
Confidence             6667777777776643

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=1.1e-17  Score=156.24  Aligned_cols=139  Identities=17%  Similarity=0.202  Sum_probs=109.4

Q ss_pred             ccHHH-HhCCCCccEEEcCCCCCC-CCchhhcCCCCCcEEEecCCC-CCC---chhhhCCC-------CCcEEEecCCCC
Q 039152           82 IPQNL-LRSMLQVRVLDLTDMNLL-SLPSSIGLLTNLHTLCLYSCI-LKD---MAVISDLK-------KLEILCLHGSSI  148 (259)
Q Consensus        82 l~~~~-~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~-~~~---~~~~~~l~-------~L~~L~l~~~~i  148 (259)
                      +|+.+ |.++++|++|++++|.+. .+|..++++++|++|++++|. +++   |..++.++       +|++|++++|.+
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence            77765 458899999999988766 688888899999999999987 764   55566554       899999999888


Q ss_pred             cccch--hhccCCcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCC-CCeEEeecccccCCc
Q 039152          149 YQLPV--EVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEK-PERIDLDANVRLKDQ  221 (259)
Q Consensus       149 ~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~-L~~L~l~~~~~~~~~  221 (259)
                      ..+|.  .++++++|+.|++++|.. ..+|..+.+++|+.|++++|.++.+|..+..+++ |+.|++++|.....+
T Consensus       561 ~~ip~~~~l~~L~~L~~L~Ls~N~l-~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp  635 (876)
T 4ecn_A          561 EEFPASASLQKMVKLGLLDCVHNKV-RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP  635 (876)
T ss_dssp             CBCCCHHHHTTCTTCCEEECTTSCC-CBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCC
T ss_pred             CccCChhhhhcCCCCCEEECCCCCc-ccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCc
Confidence            88888  788888999999988554 4777547888888888888888888887788887 888888877433333

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.72  E-value=6.3e-17  Score=146.32  Aligned_cols=136  Identities=28%  Similarity=0.339  Sum_probs=90.5

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCc-ccchh-h
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIY-QLPVE-V  155 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~-~lp~~-i  155 (259)
                      ..+++..|.++++|++|++++|.++.+|..+..+++|++|++++|.+..  +..++.+++|++|++++|.+. .+|.. +
T Consensus       267 ~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  346 (606)
T 3t6q_A          267 FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL  346 (606)
T ss_dssp             SSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred             CccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence            4566666778888888888888888888878888888888888888776  456777777777777777665 55544 6


Q ss_pred             ccCCcCCEEecCCCCCceee--CCC-CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecc
Q 039152          156 GQLTQLRSLDLRHCSNLQVI--PLN-KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDAN  215 (259)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~l--p~~-~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~  215 (259)
                      ..+++|++|++++|......  +.. ..+++|++|++++|.++.+ |..+..+++|+.|++++|
T Consensus       347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  410 (606)
T 3t6q_A          347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT  410 (606)
T ss_dssp             TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred             hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence            66777777777765443332  222 5566666666666665433 344445556666666555

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.72  E-value=6.1e-17  Score=142.41  Aligned_cols=83  Identities=20%  Similarity=0.244  Sum_probs=38.2

Q ss_pred             HHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCccc-chhhccCCcC
Q 039152           86 LLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQL-PVEVGQLTQL  161 (259)
Q Consensus        86 ~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L  161 (259)
                      .|.++++|++|++++|.+..+|. .+.++++|++|++++|.+..  +..+..+++|++|++++|.+..+ |..+..+++|
T Consensus        75 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  154 (477)
T 2id5_A           75 AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL  154 (477)
T ss_dssp             TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTC
T ss_pred             hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCC
Confidence            34555555555555555554443 23445555555555555444  23344444444444444444433 2223444444


Q ss_pred             CEEecCC
Q 039152          162 RSLDLRH  168 (259)
Q Consensus       162 ~~L~l~~  168 (259)
                      ++|++++
T Consensus       155 ~~L~l~~  161 (477)
T 2id5_A          155 EQLTLEK  161 (477)
T ss_dssp             CEEEEES
T ss_pred             CEEECCC
Confidence            4444443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=4e-17  Score=132.84  Aligned_cols=146  Identities=25%  Similarity=0.252  Sum_probs=99.5

Q ss_pred             HhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEec
Q 039152           87 LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDL  166 (259)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l  166 (259)
                      +..+++|++|++++|.+..+| .++.+++|++|++++|.+++.+.++.+++|++|++++|+++.+|....  ++|++|++
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L  113 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFL  113 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEEC
T ss_pred             hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCcccc--CcccEEEc
Confidence            356677777777777777766 477777777777777777772227777777777777777776665333  77777777


Q ss_pred             CCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeecccc
Q 039152          167 RHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAEL  237 (259)
Q Consensus       167 ~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~  237 (259)
                      ++| .+..++....+++|+.|++++|.++.+| .+..+++|+.|++++|..........+++|+.|+++++
T Consensus       114 ~~N-~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          114 DNN-ELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             CSS-CCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEE
T ss_pred             cCC-ccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCC
Confidence            774 4444554467777777777777777665 45677777777777774444333333777777777776

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.72  E-value=9.5e-18  Score=140.14  Aligned_cols=156  Identities=17%  Similarity=0.132  Sum_probs=88.3

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-c-----------------------------
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-M-----------------------------  129 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~-----------------------------  129 (259)
                      ..+++..|.++++|++|++++|.+...++ +..+++|++|++++|.+++ +                             
T Consensus        47 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L  125 (317)
T 3o53_A           47 SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNI  125 (317)
T ss_dssp             CCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEE
T ss_pred             CcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEE
Confidence            45666677899999999999998886555 7788888888888776543 1                             


Q ss_pred             ------------hhhhCCCCCcEEEecCCCCcccc-hhh-ccCCcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCC
Q 039152          130 ------------AVISDLKKLEILCLHGSSIYQLP-VEV-GQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDAN  195 (259)
Q Consensus       130 ------------~~~~~l~~L~~L~l~~~~i~~lp-~~i-~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~  195 (259)
                                  ..++.+++|++|++++|.+..++ ..+ ..+++|++|++++| .+..++....+++|+.|++++|.++
T Consensus       126 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~l~~L~~L~Ls~N~l~  204 (317)
T 3o53_A          126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNKLA  204 (317)
T ss_dssp             ECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSSCCC
T ss_pred             ECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCcccccccccccCCEEECCCCcCC
Confidence                        12333444444444444444322 222 23444555555442 2333333344555666666666555


Q ss_pred             ccCCCCcCCCCCCeEEeecccccCCccccc-ccccceeecccc
Q 039152          196 TLPRGGLFLEKPERIDLDANVRLKDQDTVQ-LWGIEELSLAEL  237 (259)
Q Consensus       196 ~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~-l~~L~~L~l~~~  237 (259)
                      .+|..+..+++|+.|++++|.....+..+. +++|+.|++++|
T Consensus       205 ~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N  247 (317)
T 3o53_A          205 FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN  247 (317)
T ss_dssp             EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTC
T ss_pred             cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCC
Confidence            555555555666666666553333333232 556666666655

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.71  E-value=7e-17  Score=144.32  Aligned_cols=153  Identities=18%  Similarity=0.273  Sum_probs=107.0

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCC-Cc---hhhcCCCCCcEEEecCCCCCC-c---hhhhCCCCCcEEEecCCCCccc
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLS-LP---SSIGLLTNLHTLCLYSCILKD-M---AVISDLKKLEILCLHGSSIYQL  151 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~-lp---~~i~~l~~L~~L~l~~~~~~~-~---~~~~~l~~L~~L~l~~~~i~~l  151 (259)
                      ..+|..+|.++++|++|++++|.+.. +|   ..++.+++|++|++++|.++. +   ..++.+++|++|++++|+++.+
T Consensus       323 ~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l  402 (549)
T 2z81_A          323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM  402 (549)
T ss_dssp             CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC
T ss_pred             ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC
Confidence            45788887789999999999998884 33   236788999999999999988 3   3588899999999999999999


Q ss_pred             chhhccCCcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccce
Q 039152          152 PVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEE  231 (259)
Q Consensus       152 p~~i~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~  231 (259)
                      |..++.+++|++|++++|. +..+|.. -.++|++|++++|.++.++   ..+++|++|++++|.....+....+++|+.
T Consensus       403 p~~~~~~~~L~~L~Ls~N~-l~~l~~~-~~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~  477 (549)
T 2z81_A          403 PDSCQWPEKMRFLNLSSTG-IRVVKTC-IPQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPDASLFPVLLV  477 (549)
T ss_dssp             CSCCCCCTTCCEEECTTSC-CSCCCTT-SCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCCGGGCTTCCE
T ss_pred             ChhhcccccccEEECCCCC-cccccch-hcCCceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCCcccCccCCE
Confidence            9888889999999999854 4555542 2245555555555555443   235555555555553333333333555555


Q ss_pred             eecccc
Q 039152          232 LSLAEL  237 (259)
Q Consensus       232 L~l~~~  237 (259)
                      |++++|
T Consensus       478 L~Ls~N  483 (549)
T 2z81_A          478 MKISRN  483 (549)
T ss_dssp             EECCSS
T ss_pred             EecCCC
Confidence            555555

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.71  E-value=2.6e-17  Score=131.95  Aligned_cols=174  Identities=17%  Similarity=0.166  Sum_probs=139.9

Q ss_pred             cccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCC-CCC-c-hhhhCCCCCcEEEecC-CCCcccch
Q 039152           79 FFAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCI-LKD-M-AVISDLKKLEILCLHG-SSIYQLPV  153 (259)
Q Consensus        79 l~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~-~~~-~-~~~~~l~~L~~L~l~~-~~i~~lp~  153 (259)
                      +..+|. +   .+++++|++++|.++.+|. .+..+++|++|++++|. ++. + ..+..+++|++|++++ |.++.+|.
T Consensus        23 l~~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           23 IQRIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             CSSCCC-C---CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             ccccCC-C---CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            445666 2   3489999999999998766 78899999999999997 877 4 5789999999999998 99998875


Q ss_pred             -hhccCCcCCEEecCCCCCceeeCCCCCCCCCc---EEEeecc-CCCccCCC-CcCCCCCC-eEEeecccccCCccc-cc
Q 039152          154 -EVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLT---SLELEVN-DANTLPRG-GLFLEKPE-RIDLDANVRLKDQDT-VQ  225 (259)
Q Consensus       154 -~i~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~---~L~l~~~-~~~~~p~~-~~~l~~L~-~L~l~~~~~~~~~~~-~~  225 (259)
                       .+..+++|++|++++|. +..+|....+++|+   +|++++| .++.+|.. +..+++|+ .|++++|.....+.. +.
T Consensus        99 ~~f~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~  177 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN  177 (239)
T ss_dssp             TSEECCTTCCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT
T ss_pred             HHhCCCCCCCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC
Confidence             48899999999999954 55677667778887   9999999 89988765 67899999 999998854444433 33


Q ss_pred             ccccceeeccccchhhhhhhhhhhhccc-ccccCC
Q 039152          226 LWGIEELSLAELLDHIKNFVNKLVKVGS-SQLKYL  259 (259)
Q Consensus       226 l~~L~~L~l~~~~~~~~~~~~~l~~~~l-~~L~~L  259 (259)
                      .++|+.|+++++ ..+..++... +.++ ++|+.|
T Consensus       178 ~~~L~~L~L~~n-~~l~~i~~~~-~~~l~~~L~~L  210 (239)
T 2xwt_C          178 GTKLDAVYLNKN-KYLTVIDKDA-FGGVYSGPSLL  210 (239)
T ss_dssp             TCEEEEEECTTC-TTCCEECTTT-TTTCSBCCSEE
T ss_pred             CCCCCEEEcCCC-CCcccCCHHH-hhccccCCcEE
Confidence            679999999999 4377777654 5566 777653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.71  E-value=6.1e-17  Score=135.98  Aligned_cols=171  Identities=17%  Similarity=0.201  Sum_probs=91.4

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCC-chhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchh-hc
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVE-VG  156 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~-i~  156 (259)
                      ..+++..|.++++|++|++++|.++.+ |..++.+++|++|++++|.++. |..+.  ++|++|++++|.+..+|.. +.
T Consensus        67 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~  144 (332)
T 2ft3_A           67 SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFS  144 (332)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGS
T ss_pred             CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhC
Confidence            345554556777777777777777654 5566777777777777776665 43333  5666666666666655543 55


Q ss_pred             cCCcCCEEecCCCCCc------------------------eeeCCCCCCCCCcEEEeeccCCCccC-CCCcCCCCCCeEE
Q 039152          157 QLTQLRSLDLRHCSNL------------------------QVIPLNKHLPNLTSLELEVNDANTLP-RGGLFLEKPERID  211 (259)
Q Consensus       157 ~l~~L~~L~l~~~~~~------------------------~~lp~~~~l~~L~~L~l~~~~~~~~p-~~~~~l~~L~~L~  211 (259)
                      .+++|++|++++|...                        ..+|. .-.++|+.|++++|.++.++ ..+..+++|+.|+
T Consensus       145 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~-~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~  223 (332)
T 2ft3_A          145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK-DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLG  223 (332)
T ss_dssp             SCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCS-SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCB
T ss_pred             CCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCc-cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence            6666666666654321                        11111 11134555555555554333 3344555566666


Q ss_pred             eecccccCCcc-ccc-ccccceeeccccchhhhhhhhhhhhccccccc
Q 039152          212 LDANVRLKDQD-TVQ-LWGIEELSLAELLDHIKNFVNKLVKVGSSQLK  257 (259)
Q Consensus       212 l~~~~~~~~~~-~~~-l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~  257 (259)
                      +++|.....+. .+. +++|+.|++++|  .+..+|..+  ..+++|+
T Consensus       224 L~~N~l~~~~~~~~~~l~~L~~L~L~~N--~l~~lp~~l--~~l~~L~  267 (332)
T 2ft3_A          224 LGHNQIRMIENGSLSFLPTLRELHLDNN--KLSRVPAGL--PDLKLLQ  267 (332)
T ss_dssp             CCSSCCCCCCTTGGGGCTTCCEEECCSS--CCCBCCTTG--GGCTTCC
T ss_pred             CCCCcCCcCChhHhhCCCCCCEEECCCC--cCeecChhh--hcCccCC
Confidence            65553332221 222 555666666555  444555432  2444444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=3.6e-17  Score=147.65  Aligned_cols=153  Identities=26%  Similarity=0.241  Sum_probs=130.6

Q ss_pred             HhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEec
Q 039152           87 LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDL  166 (259)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l  166 (259)
                      +..+++|+.|++++|.+..++. +..+++|++|++++|.+..++.++.+++|++|++++|.+..+| .+..+++|+.|++
T Consensus        61 l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L  138 (605)
T 1m9s_A           61 IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYL  138 (605)
T ss_dssp             GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEEC
T ss_pred             HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEEC
Confidence            5789999999999999998877 8999999999999999998778999999999999999999874 5889999999999


Q ss_pred             CCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeeccccchhhhhhh
Q 039152          167 RHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFV  245 (259)
Q Consensus       167 ~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  245 (259)
                      ++|. +..++....+++|+.|++++|.++.++. +..+++|+.|++++|.....+....+++|+.|++++|  .+...|
T Consensus       139 s~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N--~l~~~p  213 (605)
T 1m9s_A          139 GNNK-ITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ--ECLNKP  213 (605)
T ss_dssp             CSSC-CCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSE--EEECCC
T ss_pred             CCCc-cCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCC--cCcCCc
Confidence            9964 4555545899999999999999987766 7899999999999995555444444999999999998  444443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.71  E-value=2.2e-17  Score=137.87  Aligned_cols=175  Identities=22%  Similarity=0.194  Sum_probs=126.7

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCc-hhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCccc-------
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLP-SSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQL-------  151 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-------  151 (259)
                      ...+..++..+++|++|++++|.++.++ ..+..+++|++|++++|.+.+...+..+++|++|++++|.+..+       
T Consensus        23 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~  102 (317)
T 3o53_A           23 KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIE  102 (317)
T ss_dssp             HHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEECTTCC
T ss_pred             hhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCCCCcC
Confidence            4455666777788999999999888654 57888899999999998887722377778888777777755432       


Q ss_pred             ----------------------------------chhhccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCC
Q 039152          152 ----------------------------------PVEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDAN  195 (259)
Q Consensus       152 ----------------------------------p~~i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~  195 (259)
                                                        |..++.+++|++|++++|......+..  ..+++|++|++++|.++
T Consensus       103 ~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  182 (317)
T 3o53_A          103 TLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (317)
T ss_dssp             EEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             EEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence                                              224667788888888886544433332  46788999999999888


Q ss_pred             ccCCCCcCCCCCCeEEeecccccCCccccc-ccccceeeccccchhhhhhhhhhhhcccccccCC
Q 039152          196 TLPRGGLFLEKPERIDLDANVRLKDQDTVQ-LWGIEELSLAELLDHIKNFVNKLVKVGSSQLKYL  259 (259)
Q Consensus       196 ~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~L  259 (259)
                      .+|.. ..+++|+.|++++|.....+..+. +++|+.|++++|  .+..+|..+  ..+++|++|
T Consensus       183 ~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N--~l~~l~~~~--~~l~~L~~L  242 (317)
T 3o53_A          183 DVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN--KLVLIEKAL--RFSQNLEHF  242 (317)
T ss_dssp             EEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS--CCCEECTTC--CCCTTCCEE
T ss_pred             ccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCC--cccchhhHh--hcCCCCCEE
Confidence            87665 458889999999885544433343 888999999988  677777643  366666643

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.71  E-value=3.3e-17  Score=137.65  Aligned_cols=170  Identities=20%  Similarity=0.239  Sum_probs=123.0

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCC-chhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchhhc
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVEVG  156 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~i~  156 (259)
                      ..+|..+   .+++++|++++|.+..+ |..++++++|++|++++|.++.  +..++.+++|++|++++|.+..+|..+.
T Consensus        46 ~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~  122 (332)
T 2ft3_A           46 KAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP  122 (332)
T ss_dssp             SSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC
T ss_pred             cccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc
Confidence            4567654   36899999999999976 4579999999999999999998  5789999999999999999999998776


Q ss_pred             cCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCC---ccCCCCcCC--------------------CCCCeEE
Q 039152          157 QLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDAN---TLPRGGLFL--------------------EKPERID  211 (259)
Q Consensus       157 ~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~---~~p~~~~~l--------------------~~L~~L~  211 (259)
                        ++|++|++++| .+..+|..  .++++|+.|++++|.++   ..|..+..+                    ++|+.|+
T Consensus       123 --~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~  199 (332)
T 2ft3_A          123 --SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELH  199 (332)
T ss_dssp             --TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCB
T ss_pred             --ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEE
Confidence              89999999995 45566654  78899999999998875   334444444                    2444444


Q ss_pred             eecccccCCc-cccc-ccccceeeccccchhhhhhhhhhhhcccccccC
Q 039152          212 LDANVRLKDQ-DTVQ-LWGIEELSLAELLDHIKNFVNKLVKVGSSQLKY  258 (259)
Q Consensus       212 l~~~~~~~~~-~~~~-l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~  258 (259)
                      +++|.....+ ..+. +++|+.|++++|  .+..++... +..+++|+.
T Consensus       200 l~~n~i~~~~~~~l~~l~~L~~L~L~~N--~l~~~~~~~-~~~l~~L~~  245 (332)
T 2ft3_A          200 LDHNKIQAIELEDLLRYSKLYRLGLGHN--QIRMIENGS-LSFLPTLRE  245 (332)
T ss_dssp             CCSSCCCCCCTTSSTTCTTCSCCBCCSS--CCCCCCTTG-GGGCTTCCE
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCC--cCCcCChhH-hhCCCCCCE
Confidence            4444222221 2222 677777777777  555555432 345666654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.70  E-value=5.6e-17  Score=132.67  Aligned_cols=172  Identities=25%  Similarity=0.266  Sum_probs=134.9

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccc-hhh
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLP-VEV  155 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp-~~i  155 (259)
                      ..+|..+   .+++++|++++|.++.++. .+..+++|++|++++|.+..  +..+..+++|++|++++|.+..++ ..+
T Consensus        20 ~~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~   96 (276)
T 2z62_A           20 YKIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF   96 (276)
T ss_dssp             SSCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred             cccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh
Confidence            4556643   3579999999999997665 78999999999999999988  357899999999999999999776 558


Q ss_pred             ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCc--cCCCCcCCCCCCeEEeecccccCCc-ccc------
Q 039152          156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANT--LPRGGLFLEKPERIDLDANVRLKDQ-DTV------  224 (259)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~~~-~~~------  224 (259)
                      ..+++|++|++++|. +..++..  +.+++|++|++++|.++.  +|..+..+++|+.|++++|.....+ ..+      
T Consensus        97 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  175 (276)
T 2z62_A           97 SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  175 (276)
T ss_dssp             TTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred             cCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence            999999999999954 4455542  889999999999999975  6888899999999999987332221 111      


Q ss_pred             ----------------------cccccceeeccccchhhhhhhhhhhhcccccccC
Q 039152          225 ----------------------QLWGIEELSLAELLDHIKNFVNKLVKVGSSQLKY  258 (259)
Q Consensus       225 ----------------------~l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~  258 (259)
                                            ...+|+.|++++|  .+..+|... +..+++|++
T Consensus       176 ~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n--~l~~~~~~~-~~~l~~L~~  228 (276)
T 2z62_A          176 PLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN--QLKSVPDGI-FDRLTSLQK  228 (276)
T ss_dssp             TTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSS--CCSCCCTTT-TTTCCSCCE
T ss_pred             cccceeeecCCCcccccCccccCCCcccEEECCCC--ceeecCHhH-hcccccccE
Confidence                                  1336777888887  566776654 456777664

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.70  E-value=2.8e-16  Score=125.24  Aligned_cols=135  Identities=27%  Similarity=0.325  Sum_probs=106.9

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCC-chhhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccchh-h
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPVE-V  155 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-i  155 (259)
                      ..+|.++   .++|++|++++|.+..+ |..+..+++|++|++++|.+.. + ..+..+++|++|++++|.++.+|.. +
T Consensus        32 ~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~  108 (229)
T 3e6j_A           32 ASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF  108 (229)
T ss_dssp             SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHh
Confidence            5666643   37888999999988865 5678888899999999998887 4 4567888999999999988888765 6


Q ss_pred             ccCCcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeeccccc
Q 039152          156 GQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDANVRL  218 (259)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~  218 (259)
                      ..+++|++|++++| .+..+|.. ..+++|++|++++|.++.+|.. +..+++|+.|++.+|...
T Consensus       109 ~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          109 DRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             TTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CcchhhCeEeccCC-cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            78889999999884 55677765 7888899999999988877754 567888999998888433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.70  E-value=1.5e-17  Score=151.37  Aligned_cols=133  Identities=16%  Similarity=0.225  Sum_probs=96.0

Q ss_pred             ccHHHHh--CCCCccEEEcCCCCCC-CCchhhcCCCCCcEEEecCCC-CCC---chhhhCC------CCCcEEEecCCCC
Q 039152           82 IPQNLLR--SMLQVRVLDLTDMNLL-SLPSSIGLLTNLHTLCLYSCI-LKD---MAVISDL------KKLEILCLHGSSI  148 (259)
Q Consensus        82 l~~~~~~--~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~-~~~---~~~~~~l------~~L~~L~l~~~~i  148 (259)
                      +|+.+ .  ++++|++|++++|.+. .+|..++++++|++|++++|. +++   |..++.+      ++|++|++++|.+
T Consensus       239 ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l  317 (636)
T 4eco_A          239 KTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL  317 (636)
T ss_dssp             TTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred             Cchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence            66654 4  7888888888888766 678888888888888888887 763   5666665      8888888888888


Q ss_pred             cccch--hhccCCcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCC-CCeEEeecc
Q 039152          149 YQLPV--EVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEK-PERIDLDAN  215 (259)
Q Consensus       149 ~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~-L~~L~l~~~  215 (259)
                      ..+|.  .++.+++|++|++++|...+.+|..+.+++|+.|++++|.++.+|..+..+++ |+.|++++|
T Consensus       318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N  387 (636)
T 4eco_A          318 KTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN  387 (636)
T ss_dssp             SSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSS
T ss_pred             CccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCC
Confidence            88887  78888888888888866554777335555666666666665555555555555 666666555

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=1.1e-16  Score=144.49  Aligned_cols=129  Identities=24%  Similarity=0.277  Sum_probs=94.3

Q ss_pred             HhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEec
Q 039152           87 LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDL  166 (259)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l  166 (259)
                      +..+++|+.|++++|.+..+| .+..+++|++|++++|.+..++.+..+++|+.|++++|.+..+ ..+..+++|+.|++
T Consensus        83 l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~L  160 (605)
T 1m9s_A           83 LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSL  160 (605)
T ss_dssp             GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEEC
T ss_pred             hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEEC
Confidence            567788888888888777766 4777788888888888877766677788888888888877766 45777788888888


Q ss_pred             CCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccC
Q 039152          167 RHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLK  219 (259)
Q Consensus       167 ~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~  219 (259)
                      ++|......| ...+++|+.|++++|.++.+|. +..+++|+.|++++|....
T Consensus       161 s~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~-l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          161 EDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCSEEEEC
T ss_pred             cCCcCCCchh-hccCCCCCEEECcCCCCCCChH-HccCCCCCEEEccCCcCcC
Confidence            7754433333 4677788888888887777653 5777888888888774443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.70  E-value=2.1e-16  Score=123.91  Aligned_cols=159  Identities=30%  Similarity=0.295  Sum_probs=128.0

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccchh-h
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPVE-V  155 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-i  155 (259)
                      ..+|.++   .+++++|++++|.++.++. .+..+++|++|++++|.++. + ..+..+++|++|++++|.+..+|.. +
T Consensus        20 ~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~   96 (208)
T 2o6s_A           20 TSVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF   96 (208)
T ss_dssp             SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             cCCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHh
Confidence            3455543   4689999999999997766 47899999999999999998 4 4578899999999999999988776 6


Q ss_pred             ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeecccccCCccccccccccee
Q 039152          156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDANVRLKDQDTVQLWGIEEL  232 (259)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L  232 (259)
                      ..+++|++|++++| .+..++..  ..+++|++|++++|.++.+|.. +..+++|+.|++.+|...     ..+++|+.|
T Consensus        97 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-----~~~~~l~~L  170 (208)
T 2o6s_A           97 DKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-----CTCPGIRYL  170 (208)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----CCTTTTHHH
T ss_pred             cCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----cCCCCHHHH
Confidence            89999999999985 45566654  7899999999999999888775 568999999999988322     125678888


Q ss_pred             eccccchhhhhhhhhh
Q 039152          233 SLAELLDHIKNFVNKL  248 (259)
Q Consensus       233 ~l~~~~~~~~~~~~~l  248 (259)
                      ++..+ .....+|+++
T Consensus       171 ~~~~n-~~~g~ip~~~  185 (208)
T 2o6s_A          171 SEWIN-KHSGVVRNSA  185 (208)
T ss_dssp             HHHHH-HCTTTBBCTT
T ss_pred             HHHHH-hCCceeeccC
Confidence            88777 5556666543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.70  E-value=8.4e-17  Score=140.57  Aligned_cols=119  Identities=22%  Similarity=0.162  Sum_probs=64.0

Q ss_pred             CCcEEEecCCCCcc-cchhhccCCcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEee
Q 039152          137 KLEILCLHGSSIYQ-LPVEVGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLD  213 (259)
Q Consensus       137 ~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~  213 (259)
                      +|++|++++|.+.. .|..++.+++|++|++++|......|.. ..+++|++|++++|.++.+ |..+..+++|+.|+++
T Consensus       276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  355 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS  355 (455)
T ss_dssp             CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred             CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence            34444444444442 2344566666666666664433332322 5666666666666666544 3445566666777666


Q ss_pred             cccccCC-ccccc-ccccceeeccccchhhhhhhhhhhhcccccccC
Q 039152          214 ANVRLKD-QDTVQ-LWGIEELSLAELLDHIKNFVNKLVKVGSSQLKY  258 (259)
Q Consensus       214 ~~~~~~~-~~~~~-l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~  258 (259)
                      +|..... +..+. +++|+.|++++|  .+..+|... +..+++|++
T Consensus       356 ~N~l~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~-~~~l~~L~~  399 (455)
T 3v47_A          356 YNHIRALGDQSFLGLPNLKELALDTN--QLKSVPDGI-FDRLTSLQK  399 (455)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSS--CCSCCCTTT-TTTCTTCCE
T ss_pred             CCcccccChhhccccccccEEECCCC--ccccCCHhH-hccCCcccE
Confidence            6633322 22222 666777777666  555555543 345555554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.69  E-value=5.6e-17  Score=143.19  Aligned_cols=123  Identities=14%  Similarity=0.034  Sum_probs=79.9

Q ss_pred             CCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcc-cchhhc-cCCcCCEEecCCCCCceeeCCCCCCCCCcEEEe
Q 039152          114 TNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQ-LPVEVG-QLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLEL  189 (259)
Q Consensus       114 ~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~-lp~~i~-~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l  189 (259)
                      ++|++|++++|.+++  +..++.+++|++|++++|.+.. .|..+. .+++|++|++++|. +..+|....+++|+.|++
T Consensus       120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~L  198 (487)
T 3oja_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDL  198 (487)
T ss_dssp             SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccccccCCCCCEEEC
Confidence            444555555555555  3456667777777777777664 344454 56777777777743 444454456777777777


Q ss_pred             eccCCCccCCCCcCCCCCCeEEeecccccCCccccc-ccccceeecccc
Q 039152          190 EVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQ-LWGIEELSLAEL  237 (259)
Q Consensus       190 ~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~-l~~L~~L~l~~~  237 (259)
                      ++|.++.+|..+..+++|+.|++++|.....+..+. +++|+.|++++|
T Consensus       199 s~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N  247 (487)
T 3oja_A          199 SSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN  247 (487)
T ss_dssp             CSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTC
T ss_pred             CCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCC
Confidence            777777777777777778888877774444444343 677777888777

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.69  E-value=4e-16  Score=131.57  Aligned_cols=81  Identities=21%  Similarity=0.188  Sum_probs=35.0

Q ss_pred             hccCCcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeec
Q 039152          155 VGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSL  234 (259)
Q Consensus       155 i~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l  234 (259)
                      +..+++|++|++++|. +..++....+++|++|++++|.++.++ .+..+++|+.|++++|.....+....+++|+.|++
T Consensus       217 ~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L  294 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFL  294 (347)
T ss_dssp             GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred             hhcCCcCCEEEccCCc-cCCCcchhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCCChhhcCCCCCCEEEC
Confidence            3444444444444432 222222244455555555555544442 23445555555555542222222222445555555


Q ss_pred             ccc
Q 039152          235 AEL  237 (259)
Q Consensus       235 ~~~  237 (259)
                      ++|
T Consensus       295 ~~n  297 (347)
T 4fmz_A          295 NNN  297 (347)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.69  E-value=6.3e-17  Score=146.30  Aligned_cols=171  Identities=18%  Similarity=0.092  Sum_probs=131.8

Q ss_pred             cHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC--c-hhhhCCCCCcEEEecCCCCcc-cchhhccC
Q 039152           83 PQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD--M-AVISDLKKLEILCLHGSSIYQ-LPVEVGQL  158 (259)
Q Consensus        83 ~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~-~~~~~l~~L~~L~l~~~~i~~-lp~~i~~l  158 (259)
                      |.. +..+++|++|++++|.+..+|..+..+++|++|++++|.+..  + ..+..+++|++|++++|.+.. .|..+..+
T Consensus       369 ~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  447 (606)
T 3vq2_A          369 SYS-DLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL  447 (606)
T ss_dssp             CHH-HHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred             hhh-hccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCC
Confidence            444 578888999999888888888778888899999999988877  3 478888999999999998874 56668888


Q ss_pred             CcCCEEecCCCCCce-eeCCC-CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecccccCC-ccccc-ccccceee
Q 039152          159 TQLRSLDLRHCSNLQ-VIPLN-KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRLKD-QDTVQ-LWGIEELS  233 (259)
Q Consensus       159 ~~L~~L~l~~~~~~~-~lp~~-~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~-~~~~~-l~~L~~L~  233 (259)
                      ++|++|++++|...+ ..|.. +.+++|+.|++++|.++.+ |..+..+++|+.|++++|..... +..+. +++|+.|+
T Consensus       448 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  527 (606)
T 3vq2_A          448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD  527 (606)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEE
Confidence            999999998876554 35554 7888999999999988755 55677889999999998854444 44444 88899999


Q ss_pred             ccccchhhhhhhhhhhhcccc-cccC
Q 039152          234 LAELLDHIKNFVNKLVKVGSS-QLKY  258 (259)
Q Consensus       234 l~~~~~~~~~~~~~l~~~~l~-~L~~  258 (259)
                      +++|  .+..+|..+  ..++ +|++
T Consensus       528 l~~N--~l~~~p~~~--~~l~~~L~~  549 (606)
T 3vq2_A          528 CSFN--RIETSKGIL--QHFPKSLAF  549 (606)
T ss_dssp             CTTS--CCCCEESCG--GGSCTTCCE
T ss_pred             CCCC--cCcccCHhH--hhhcccCcE
Confidence            9988  677787753  3554 4554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.68  E-value=2.4e-16  Score=138.04  Aligned_cols=156  Identities=22%  Similarity=0.176  Sum_probs=99.0

Q ss_pred             HhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEec
Q 039152           87 LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDL  166 (259)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l  166 (259)
                      |..+++|++|++++|.++.+|  ++.+++|++|++++|.+++.+ ++.+++|++|++++|.+..+|  ++.+++|++|++
T Consensus        60 l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l  134 (457)
T 3bz5_A           60 IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNC  134 (457)
T ss_dssp             GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred             hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEEC
Confidence            456777777777777776664  666777777777777766632 666777777777777776664  667777777777


Q ss_pred             CCCCCceeeCCCCCCCCCcEEEeeccC-CCccCCCCcCCCCCCeEEeecccccCCcccccccccceeeccccchhhhhhh
Q 039152          167 RHCSNLQVIPLNKHLPNLTSLELEVND-ANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFV  245 (259)
Q Consensus       167 ~~~~~~~~lp~~~~l~~L~~L~l~~~~-~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  245 (259)
                      ++|. +..++ .+.+++|+.|++++|. ++.+  .++.+++|+.|++++|.....+ ...+++|+.|++++|  .+..++
T Consensus       135 ~~N~-l~~l~-l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N--~l~~~~  207 (457)
T 3bz5_A          135 ARNT-LTEID-VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTN--NITKLD  207 (457)
T ss_dssp             TTSC-CSCCC-CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSS--CCSCCC
T ss_pred             CCCc-cceec-cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec-cccCCCCCEEECcCC--cCCeec
Confidence            7643 33344 2567777777777773 4444  2456777777777776433333 223777777777777  454442


Q ss_pred             hhhhhcccccccC
Q 039152          246 NKLVKVGSSQLKY  258 (259)
Q Consensus       246 ~~l~~~~l~~L~~  258 (259)
                          ...+++|++
T Consensus       208 ----l~~l~~L~~  216 (457)
T 3bz5_A          208 ----LNQNIQLTF  216 (457)
T ss_dssp             ----CTTCTTCSE
T ss_pred             ----cccCCCCCE
Confidence                335555554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=4e-17  Score=132.83  Aligned_cols=161  Identities=17%  Similarity=0.137  Sum_probs=134.7

Q ss_pred             CCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCC
Q 039152           89 SMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRH  168 (259)
Q Consensus        89 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~  168 (259)
                      .+..+..++++.+.++.++ .+..+++|++|++++|.++..+.++.+++|++|++++|.+..+|. +..+++|++|++++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred             HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence            4556778889999999887 588999999999999999985589999999999999999999887 99999999999999


Q ss_pred             CCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeeccccchhhhhhhhhh
Q 039152          169 CSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFVNKL  248 (259)
Q Consensus       169 ~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l  248 (259)
                      | .+..+|.... ++|+.|++++|.++.+| .+..+++|+.|++++|.....+....+++|+.|++++|  .+..+ .. 
T Consensus        95 N-~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N--~i~~~-~~-  167 (263)
T 1xeu_A           95 N-RLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGN--EITNT-GG-  167 (263)
T ss_dssp             S-CCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTS--CCCBC-TT-
T ss_pred             C-ccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCC--cCcch-HH-
Confidence            5 5666776544 99999999999999886 46899999999999996555554444999999999999  66666 22 


Q ss_pred             hhcccccccCC
Q 039152          249 VKVGSSQLKYL  259 (259)
Q Consensus       249 ~~~~l~~L~~L  259 (259)
                       ...+++|++|
T Consensus       168 -l~~l~~L~~L  177 (263)
T 1xeu_A          168 -LTRLKKVNWI  177 (263)
T ss_dssp             -STTCCCCCEE
T ss_pred             -hccCCCCCEE
Confidence             4467777653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.68  E-value=8.1e-17  Score=142.16  Aligned_cols=173  Identities=20%  Similarity=0.152  Sum_probs=123.7

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chh-----------------hhCCCCCcEE
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAV-----------------ISDLKKLEIL  141 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~-----------------~~~l~~L~~L  141 (259)
                      ..+++..|.++++|++|++++|.++..++ ++.+++|++|++++|.+++ ++.                 ...+++|++|
T Consensus        47 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L  125 (487)
T 3oja_A           47 SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNI  125 (487)
T ss_dssp             CCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEE
T ss_pred             CCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEE
Confidence            45566667888888888888888875554 7778888888887776554 110                 1234567777


Q ss_pred             EecCCCCccc-chhhccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeeccccc
Q 039152          142 CLHGSSIYQL-PVEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRL  218 (259)
Q Consensus       142 ~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~  218 (259)
                      ++++|.+..+ |..++.+++|++|++++|......|..  ..+++|+.|++++|.++.+|.. ..+++|+.|++++|...
T Consensus       126 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N~l~  204 (487)
T 3oja_A          126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLA  204 (487)
T ss_dssp             ECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCC
T ss_pred             ECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc-ccCCCCCEEECCCCCCC
Confidence            7777777755 445788888888888886655555544  3688999999999998877665 46889999999988554


Q ss_pred             CCccccc-ccccceeeccccchhhhhhhhhhhhcccccccC
Q 039152          219 KDQDTVQ-LWGIEELSLAELLDHIKNFVNKLVKVGSSQLKY  258 (259)
Q Consensus       219 ~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~  258 (259)
                      ..+..+. +++|+.|++++|  .+..+|..+  ..+++|+.
T Consensus       205 ~~~~~~~~l~~L~~L~Ls~N--~l~~lp~~l--~~l~~L~~  241 (487)
T 3oja_A          205 FMGPEFQSAAGVTWISLRNN--KLVLIEKAL--RFSQNLEH  241 (487)
T ss_dssp             EECGGGGGGTTCSEEECTTS--CCCEECTTC--CCCTTCCE
T ss_pred             CCCHhHcCCCCccEEEecCC--cCcccchhh--ccCCCCCE
Confidence            4444343 889999999998  666777653  35666654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.68  E-value=5.3e-17  Score=146.79  Aligned_cols=168  Identities=17%  Similarity=0.024  Sum_probs=125.7

Q ss_pred             hCCCCccEEEcCCCCCCCC---chhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccch--hhccCCcC
Q 039152           88 RSMLQVRVLDLTDMNLLSL---PSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPV--EVGQLTQL  161 (259)
Q Consensus        88 ~~l~~L~~L~l~~~~~~~l---p~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L  161 (259)
                      ..+++|++|++++|.+...   |..+..+++|++|++++|.+.. +..+..+++|++|++++|.+..++.  .+..+++|
T Consensus       347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  426 (606)
T 3vq2_A          347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL  426 (606)
T ss_dssp             CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred             ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence            4667777777777777643   6677888888888888888777 6778888888888888888775543  57888888


Q ss_pred             CEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCCc--cCCCCcCCCCCCeEEeecccccCC-ccccc-ccccceeeccc
Q 039152          162 RSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDANT--LPRGGLFLEKPERIDLDANVRLKD-QDTVQ-LWGIEELSLAE  236 (259)
Q Consensus       162 ~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~~-~~~~~-l~~L~~L~l~~  236 (259)
                      ++|++++|......|.. ..+++|++|++++|.++.  +|..+..+++|+.|++++|..... +..+. +++|+.|++++
T Consensus       427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  506 (606)
T 3vq2_A          427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH  506 (606)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence            88888887655555554 788899999999998864  688888899999999998844433 33333 89999999999


Q ss_pred             cchhhhhh-hhhhhhcccccccCC
Q 039152          237 LLDHIKNF-VNKLVKVGSSQLKYL  259 (259)
Q Consensus       237 ~~~~~~~~-~~~l~~~~l~~L~~L  259 (259)
                      |  .+..+ |..  +..+++|+.|
T Consensus       507 N--~l~~~~~~~--~~~l~~L~~L  526 (606)
T 3vq2_A          507 N--NLLFLDSSH--YNQLYSLSTL  526 (606)
T ss_dssp             S--CCSCEEGGG--TTTCTTCCEE
T ss_pred             C--cCCCcCHHH--ccCCCcCCEE
Confidence            9  55555 443  4467777653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=2e-16  Score=123.09  Aligned_cols=134  Identities=18%  Similarity=0.229  Sum_probs=117.2

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCc-ccchhhc
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIY-QLPVEVG  156 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~-~lp~~i~  156 (259)
                      ..+| + +..+++|++|++++|.+..++ .++.+++|++|++++|.++.  +..++.+++|++|++++|.+. ..|..++
T Consensus        57 ~~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~  133 (197)
T 4ezg_A           57 TDLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN  133 (197)
T ss_dssp             SCCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHT
T ss_pred             cChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHh
Confidence            3455 3 578999999999999887665 58899999999999999987  788999999999999999998 4677899


Q ss_pred             cCCcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccc
Q 039152          157 QLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVR  217 (259)
Q Consensus       157 ~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~  217 (259)
                      .+++|++|++++|..+..+|....+++|+.|++++|.++.++ .+..+++|+.|++++|..
T Consensus       134 ~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          134 TLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             TCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred             hCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence            999999999999775777776688999999999999999887 668999999999998853

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.68  E-value=8.5e-16  Score=121.65  Aligned_cols=135  Identities=23%  Similarity=0.303  Sum_probs=110.9

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-h
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE-V  155 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i  155 (259)
                      ..+|..+   .++++.|++++|.++.+|. .+..+++|++|++++|.++.  +..+..+++|++|++++|.++.+|.. +
T Consensus        24 ~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f  100 (220)
T 2v9t_B           24 TEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLF  100 (220)
T ss_dssp             SSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTT
T ss_pred             CcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHc
Confidence            4566654   3688999999999997665 68889999999999999988  57889999999999999999988877 6


Q ss_pred             ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeeccccc
Q 039152          156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDANVRL  218 (259)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~  218 (259)
                      ..+++|++|++++|. +..++..  ..+++|++|++++|.++.+|.. +..+++|+.|++.+|...
T Consensus       101 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          101 EGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            789999999999854 4555433  7889999999999999877764 668899999999988433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.67  E-value=3.5e-16  Score=141.45  Aligned_cols=157  Identities=19%  Similarity=0.240  Sum_probs=128.9

Q ss_pred             cccHHHHhCCC--CccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCccc-chhh
Q 039152           81 AIPQNLLRSML--QVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQL-PVEV  155 (259)
Q Consensus        81 ~l~~~~~~~l~--~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l-p~~i  155 (259)
                      .+++..|.++.  .|+.|++++|.+..++. .++.+++|++|++++|.++. |..++.+++|++|++++|.+..+ |..+
T Consensus       242 ~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~  321 (606)
T 3t6q_A          242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA  321 (606)
T ss_dssp             CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCG
T ss_pred             ccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhh
Confidence            34455555554  79999999999997765 58999999999999999999 88899999999999999999976 5579


Q ss_pred             ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCcc---CCCCcCCCCCCeEEeecccccCC-ccccc-ccc
Q 039152          156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTL---PRGGLFLEKPERIDLDANVRLKD-QDTVQ-LWG  228 (259)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~---p~~~~~l~~L~~L~l~~~~~~~~-~~~~~-l~~  228 (259)
                      ..+++|++|++++|.....+|..  ..+++|++|++++|.++.+   |..+..+++|+.|++++|..... +..+. +++
T Consensus       322 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  401 (606)
T 3t6q_A          322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ  401 (606)
T ss_dssp             GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT
T ss_pred             hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc
Confidence            99999999999998766677664  7899999999999999755   67788999999999999843333 22332 777


Q ss_pred             cceeecccc
Q 039152          229 IEELSLAEL  237 (259)
Q Consensus       229 L~~L~l~~~  237 (259)
                      |+.|++++|
T Consensus       402 L~~L~l~~n  410 (606)
T 3t6q_A          402 LELLDLAFT  410 (606)
T ss_dssp             CSEEECTTC
T ss_pred             CCeEECCCC
Confidence            777777777

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.67  E-value=3.8e-16  Score=123.67  Aligned_cols=141  Identities=24%  Similarity=0.250  Sum_probs=109.4

Q ss_pred             cEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCccc-chhhccCCcCCEEecCCCC
Q 039152           94 RVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQL-PVEVGQLTQLRSLDLRHCS  170 (259)
Q Consensus        94 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~  170 (259)
                      +.++.+++.++.+|..+.  .+++.|++++|.++. + ..+..+++|++|++++|.+..+ |..+..+++|++|++++ +
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-N   90 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS-S
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC-C
Confidence            567888888888887664  678888998888887 3 4788888899999988888866 56688888899999888 4


Q ss_pred             CceeeCCC--CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecccccCCcc-ccc-ccccceeecccc
Q 039152          171 NLQVIPLN--KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRLKDQD-TVQ-LWGIEELSLAEL  237 (259)
Q Consensus       171 ~~~~lp~~--~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~-~~~-l~~L~~L~l~~~  237 (259)
                      .+..+|..  ..+++|++|++++|.++.+ |..+..+++|+.|++++|.....+. .+. +++|+.|+++++
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence            55666664  6788889999988888766 4556788888999988885544433 233 888888888876

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.67  E-value=3.5e-17  Score=136.23  Aligned_cols=147  Identities=19%  Similarity=0.179  Sum_probs=72.2

Q ss_pred             CCCCccEEEcCCCCCCCCc-hhhcCCCCCcEEEecCCCCCC----c--hhhhCCCCCcEEEecCCCCcccchh----hcc
Q 039152           89 SMLQVRVLDLTDMNLLSLP-SSIGLLTNLHTLCLYSCILKD----M--AVISDLKKLEILCLHGSSIYQLPVE----VGQ  157 (259)
Q Consensus        89 ~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~----~--~~~~~l~~L~~L~l~~~~i~~lp~~----i~~  157 (259)
                      .+++|++|++++|.+..++ ..++.+++|++|++++|.+.+    +  ..++.+++|++|++++|+++.+|..    +..
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            4555555555555555433 345555555555555555432    1  1123455555555555555544331    344


Q ss_pred             CCcCCEEecCCCCCceeeCCC-CC---CCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceee
Q 039152          158 LTQLRSLDLRHCSNLQVIPLN-KH---LPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELS  233 (259)
Q Consensus       158 l~~L~~L~l~~~~~~~~lp~~-~~---l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~  233 (259)
                      +++|++|++++|......|.. ..   +++|++|++++|.++.+|..+.  ++|+.|++++|.....+....+++|+.|+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~  300 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLT  300 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEE
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEE
Confidence            555555555554333322332 22   2455555555555555555432  45555555555333323323355555555


Q ss_pred             cccc
Q 039152          234 LAEL  237 (259)
Q Consensus       234 l~~~  237 (259)
                      ++++
T Consensus       301 L~~N  304 (310)
T 4glp_A          301 LDGN  304 (310)
T ss_dssp             CSST
T ss_pred             CcCC
Confidence            5555

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.67  E-value=3.8e-16  Score=143.05  Aligned_cols=124  Identities=26%  Similarity=0.277  Sum_probs=64.2

Q ss_pred             CCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-hccCCcCCEEec
Q 039152           91 LQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDL  166 (259)
Q Consensus        91 ~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l  166 (259)
                      +++++|++++|.++.+|. .++++++|++|++++|.+..  +..++.+++|++|++++|.+..+|.. ++.+++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            455555555555554433 35555555555555555554  34455555555555555555555542 555555555555


Q ss_pred             CCCCCceeeCCC--CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecc
Q 039152          167 RHCSNLQVIPLN--KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDAN  215 (259)
Q Consensus       167 ~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~  215 (259)
                      ++|. +..++..  +++++|++|++++|.++.. |..++.+++|+.|++.+|
T Consensus       105 ~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  155 (680)
T 1ziw_A          105 MSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN  155 (680)
T ss_dssp             CSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS
T ss_pred             CCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC
Confidence            5532 2333321  4555555555555555432 333445555555555555

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.66  E-value=1e-15  Score=134.39  Aligned_cols=80  Identities=25%  Similarity=0.414  Sum_probs=39.5

Q ss_pred             HhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEec
Q 039152           87 LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDL  166 (259)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l  166 (259)
                      +.++++|++|++++|.+..++. +..+++|++|++++|.+.+...++.+++|++|++++|.+..++ .+..+++|++|++
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l  250 (466)
T 1o6v_A          173 LANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDL  250 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEEC
T ss_pred             hccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEEC
Confidence            4556666666666665555433 4555555555555555554222444444455544444444332 2334444444444


Q ss_pred             CC
Q 039152          167 RH  168 (259)
Q Consensus       167 ~~  168 (259)
                      ++
T Consensus       251 ~~  252 (466)
T 1o6v_A          251 AN  252 (466)
T ss_dssp             CS
T ss_pred             CC
Confidence            44

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.66  E-value=3.3e-16  Score=130.48  Aligned_cols=154  Identities=21%  Similarity=0.235  Sum_probs=125.6

Q ss_pred             cccHHHHhCC-----CCccEEEcCCCCCCCCc-hhhcCCCCCcEEEecCCCCCC----chhh--hCCCCCcEEEecCCCC
Q 039152           81 AIPQNLLRSM-----LQVRVLDLTDMNLLSLP-SSIGLLTNLHTLCLYSCILKD----MAVI--SDLKKLEILCLHGSSI  148 (259)
Q Consensus        81 ~l~~~~~~~l-----~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~----~~~~--~~l~~L~~L~l~~~~i  148 (259)
                      .+|. .|..+     ++|++|++++|.+..++ ..++.+++|++|++++|.+.+    ++.+  +.+++|++|++++|.+
T Consensus       135 ~~~~-~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l  213 (312)
T 1wwl_A          135 TRDA-WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM  213 (312)
T ss_dssp             SSSS-HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC
T ss_pred             chhH-HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC
Confidence            4453 34555     89999999999999766 689999999999999999765    3455  8899999999999999


Q ss_pred             ccc---chh-hccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcc
Q 039152          149 YQL---PVE-VGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQD  222 (259)
Q Consensus       149 ~~l---p~~-i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~  222 (259)
                      ..+   +.. +..+++|++|++++|......|..  ..+++|++|++++|.++.+|..+.  ++|+.|++++|.....+.
T Consensus       214 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~  291 (312)
T 1wwl_A          214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS  291 (312)
T ss_dssp             CCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC
T ss_pred             cchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh
Confidence            844   333 457899999999996554444322  668999999999999999999866  899999999996555555


Q ss_pred             cccccccceeecccc
Q 039152          223 TVQLWGIEELSLAEL  237 (259)
Q Consensus       223 ~~~l~~L~~L~l~~~  237 (259)
                      ...+++|+.|+++++
T Consensus       292 ~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          292 PDELPQVGNLSLKGN  306 (312)
T ss_dssp             TTTSCEEEEEECTTC
T ss_pred             HhhCCCCCEEeccCC
Confidence            444999999999998

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.66  E-value=8.7e-16  Score=134.51  Aligned_cols=142  Identities=21%  Similarity=0.158  Sum_probs=101.7

Q ss_pred             HhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEec
Q 039152           87 LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDL  166 (259)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l  166 (259)
                      +..+++|++|++++|.++.+|  ++.+++|++|++++|.++..+ ++.+++|++|++++|.++.++  ++.+++|++|++
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l  155 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDC  155 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEEC
T ss_pred             cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEEC
Confidence            578889999999999988775  788899999999999888843 788889999999999888774  777888888888


Q ss_pred             CCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeecccc
Q 039152          167 RHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAEL  237 (259)
Q Consensus       167 ~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~  237 (259)
                      ++|..++.++. +.+++|+.|++++|.++.+|  +..+++|+.|++++|..... ....+++|+.|++++|
T Consensus       156 ~~n~~~~~~~~-~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N  222 (457)
T 3bz5_A          156 HLNKKITKLDV-TPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSN  222 (457)
T ss_dssp             TTCSCCCCCCC-TTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC-CCTTCTTCSEEECCSS
T ss_pred             CCCCccccccc-ccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee-ccccCCCCCEEECcCC
Confidence            88766666543 56777777777777776665  45566666666665532222 1112455555555555

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.66  E-value=1.4e-16  Score=142.81  Aligned_cols=150  Identities=20%  Similarity=0.175  Sum_probs=73.7

Q ss_pred             hCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-c--hhhhCCCCCcEEEecCCCCcc-cchhhccCCcCCE
Q 039152           88 RSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-M--AVISDLKKLEILCLHGSSIYQ-LPVEVGQLTQLRS  163 (259)
Q Consensus        88 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~--~~~~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~  163 (259)
                      .++++|++|++++|.+..+|..+..+++|++|++++|.+.. +  ..+..+++|++|++++|.+.. .|..+..+++|++
T Consensus       370 ~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  449 (570)
T 2z63_A          370 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV  449 (570)
T ss_dssp             HTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred             cccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcE
Confidence            34555555555555544444444555555555555555444 1  234455555555555555542 2334555555555


Q ss_pred             EecCCCCCc-eeeCCC-CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecccccCCc-cccc-ccccceeecccc
Q 039152          164 LDLRHCSNL-QVIPLN-KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRLKDQ-DTVQ-LWGIEELSLAEL  237 (259)
Q Consensus       164 L~l~~~~~~-~~lp~~-~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~-~~~~-l~~L~~L~l~~~  237 (259)
                      |++++|... ..+|.. ..+++|+.|++++|.++.+ |..+..+++|+.|++++|.....+ ..+. +++|+.|++++|
T Consensus       450 L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N  528 (570)
T 2z63_A          450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN  528 (570)
T ss_dssp             EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             EECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence            555554332 234433 4555555555555555433 444455555555555555322222 1122 555555555554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.66  E-value=2.9e-16  Score=118.91  Aligned_cols=130  Identities=24%  Similarity=0.206  Sum_probs=106.4

Q ss_pred             CCCCccEEEcCCCCCC--CCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcc-cchhhccCCcCCEEe
Q 039152           89 SMLQVRVLDLTDMNLL--SLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQ-LPVEVGQLTQLRSLD  165 (259)
Q Consensus        89 ~l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~  165 (259)
                      .+++|+.|++++|.+.  .+|..+..+++|++|++++|.++....++.+++|++|++++|.+.. +|..+..+++|++|+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            4578999999999998  7888889999999999999998887778889999999999999986 777777799999999


Q ss_pred             cCCCCCceeeCC--C-CCCCCCcEEEeeccCCCccCC----CCcCCCCCCeEEeecccccC
Q 039152          166 LRHCSNLQVIPL--N-KHLPNLTSLELEVNDANTLPR----GGLFLEKPERIDLDANVRLK  219 (259)
Q Consensus       166 l~~~~~~~~lp~--~-~~l~~L~~L~l~~~~~~~~p~----~~~~l~~L~~L~l~~~~~~~  219 (259)
                      +++| .+..+|.  . ..+++|++|++++|.++.+|.    .+..+++|+.|++.+|...+
T Consensus       102 Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          102 LSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             CBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             ccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            9985 4555542  2 778888888888888887776    56678888888887774433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.65  E-value=1.2e-15  Score=133.90  Aligned_cols=124  Identities=29%  Similarity=0.258  Sum_probs=50.9

Q ss_pred             cCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCCCCCceeeCCCCCCCCCcEEEee
Q 039152          111 GLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELE  190 (259)
Q Consensus       111 ~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~  190 (259)
                      ..+++|++|++++|.+.....+..+++|++|++++|.+..+|. +..+++|+.|++++|. +..++....+++|+.|+++
T Consensus       240 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L~  317 (466)
T 1o6v_A          240 ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQ-LEDISPISNLKNLTYLTLY  317 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CSCCGGGGGCTTCSEEECC
T ss_pred             hcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCc-ccCchhhcCCCCCCEEECc
Confidence            3344444444444444332123444444444444444443333 3444444444444422 2222222344444455554


Q ss_pred             ccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeecccc
Q 039152          191 VNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAEL  237 (259)
Q Consensus       191 ~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~  237 (259)
                      +|.++.++. +..+++|+.|++++|.....+....+++|+.|++++|
T Consensus       318 ~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n  363 (466)
T 1o6v_A          318 FNNISDISP-VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHN  363 (466)
T ss_dssp             SSCCSCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred             CCcCCCchh-hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCC
Confidence            444443332 3444455555554442222222222555555555555

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.65  E-value=4.6e-16  Score=140.82  Aligned_cols=134  Identities=30%  Similarity=0.357  Sum_probs=112.7

Q ss_pred             cccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-
Q 039152           79 FFAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE-  154 (259)
Q Consensus        79 l~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-  154 (259)
                      +.++|.++   .+++++|++++|.++.+|. .|.++++|++|++++|.++.  +..+..+++|++|++++|+++.+|.. 
T Consensus        43 l~~vP~~l---p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~  119 (635)
T 4g8a_A           43 FYKIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA  119 (635)
T ss_dssp             CSSCCSSS---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred             cCccCCCC---CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence            45677753   3578999999999998764 68999999999999999988  45688999999999999999988865 


Q ss_pred             hccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCc--cCCCCcCCCCCCeEEeeccc
Q 039152          155 VGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANT--LPRGGLFLEKPERIDLDANV  216 (259)
Q Consensus       155 i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~--~p~~~~~l~~L~~L~l~~~~  216 (259)
                      +.++++|++|++++| .+..+|..  +++++|++|++++|.++.  +|..++.+++|++|++++|.
T Consensus       120 f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          120 FSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             GTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             hcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence            789999999999985 45666654  889999999999999864  56777889999999999874

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.65  E-value=9e-16  Score=122.26  Aligned_cols=142  Identities=28%  Similarity=0.295  Sum_probs=119.6

Q ss_pred             ccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-hccCCcCCEEecCCC
Q 039152           93 VRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLRHC  169 (259)
Q Consensus        93 L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~  169 (259)
                      -+.++.+++.+..+|..+.  ++|++|++++|.++.  +..+..+++|++|++++|++..+|.. +..+++|++|++++|
T Consensus        21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            4678888999998888664  889999999999988  56788999999999999999988865 688999999999985


Q ss_pred             CCceeeCCC--CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcc-ccc-ccccceeecccc
Q 039152          170 SNLQVIPLN--KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQD-TVQ-LWGIEELSLAEL  237 (259)
Q Consensus       170 ~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~-~~~-l~~L~~L~l~~~  237 (259)
                       .+..++..  ..+++|+.|++++|.++.+|..+..+++|+.|++++|.....+. .+. +++|+.|++.++
T Consensus        99 -~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A           99 -QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             -CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             -cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence             55666654  78999999999999999999998999999999999985544433 233 899999999887

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.65  E-value=7.2e-16  Score=141.23  Aligned_cols=116  Identities=27%  Similarity=0.247  Sum_probs=66.4

Q ss_pred             chhhhCCCCCcEEEecCCCCcccchh-hccCCcCCEEecCCCCCceeeCC----------CCCCCCCcEEEeeccCCCcc
Q 039152          129 MAVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLRHCSNLQVIPL----------NKHLPNLTSLELEVNDANTL  197 (259)
Q Consensus       129 ~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~----------~~~l~~L~~L~l~~~~~~~~  197 (259)
                      |..++.+++|++|++++|++..+|+. +..+++|+.|++++|. +..++.          ...+++|+.|++++|.++.+
T Consensus       473 p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i  551 (680)
T 1ziw_A          473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI  551 (680)
T ss_dssp             SCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCC
T ss_pred             CcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCCCCCC
Confidence            34455566666666666666655443 5566666666666643 222211          14556666777766666666


Q ss_pred             CCC-CcCCCCCCeEEeecccccCCcccc--cccccceeeccccchhhhhhhhh
Q 039152          198 PRG-GLFLEKPERIDLDANVRLKDQDTV--QLWGIEELSLAELLDHIKNFVNK  247 (259)
Q Consensus       198 p~~-~~~l~~L~~L~l~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~  247 (259)
                      |.. +.++++|+.|++++|.....+...  .+++|+.|++++|  .+..+++.
T Consensus       552 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N--~l~~~~~~  602 (680)
T 1ziw_A          552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN--LITSVEKK  602 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTS--CCCBCCHH
T ss_pred             CHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCC--cCCccChh
Confidence            653 456667777777666444443332  2667777777776  55555543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.65  E-value=1.2e-15  Score=138.01  Aligned_cols=147  Identities=18%  Similarity=0.185  Sum_probs=122.4

Q ss_pred             EEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccchh-hccCCcCCEEecCCCCC
Q 039152           95 VLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLRHCSN  171 (259)
Q Consensus        95 ~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~  171 (259)
                      +.+-++-.++.+|..+.  .++++|+|++|.++. + .++..+++|++|++++|+++.+|++ |.++++|++|++++| .
T Consensus        35 ~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~  111 (635)
T 4g8a_A           35 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-P  111 (635)
T ss_dssp             EEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-C
T ss_pred             EEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-c
Confidence            45556667888998664  579999999999998 4 6799999999999999999998765 899999999999995 5


Q ss_pred             ceeeCCC--CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeecccccC--Cccccc-ccccceeeccccchhhhhhh
Q 039152          172 LQVIPLN--KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDANVRLK--DQDTVQ-LWGIEELSLAELLDHIKNFV  245 (259)
Q Consensus       172 ~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~--~~~~~~-l~~L~~L~l~~~~~~~~~~~  245 (259)
                      +..+|..  .++++|++|++++|.++.+|.. ++.+++|+.|++++|....  .+..+. +++|+.|+++++  .+..++
T Consensus       112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N--~l~~~~  189 (635)
T 4g8a_A          112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN--KIQSIY  189 (635)
T ss_dssp             CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS--CCCEEC
T ss_pred             CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc--cccccc
Confidence            6777765  8899999999999999988764 7899999999999995433  344444 999999999998  565554


Q ss_pred             h
Q 039152          246 N  246 (259)
Q Consensus       246 ~  246 (259)
                      .
T Consensus       190 ~  190 (635)
T 4g8a_A          190 C  190 (635)
T ss_dssp             G
T ss_pred             c
Confidence            3

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.64  E-value=2.3e-15  Score=119.22  Aligned_cols=136  Identities=18%  Similarity=0.136  Sum_probs=108.8

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCc--hhhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccchh-
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLP--SSIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPVE-  154 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-  154 (259)
                      ..+|..+   .+.+++|++++|.++.++  ..+..+++|++|++++|.++. + ..++.+++|++|++++|.+..+|.. 
T Consensus        24 ~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  100 (220)
T 2v70_A           24 NKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKM  100 (220)
T ss_dssp             SSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGG
T ss_pred             ccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhH
Confidence            4566643   346789999999998763  347889999999999999988 3 5788999999999999999977665 


Q ss_pred             hccCCcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeeccccc
Q 039152          155 VGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRL  218 (259)
Q Consensus       155 i~~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~  218 (259)
                      +..+++|++|++++|......|.. ..+++|++|++++|.++.+ |..+..+++|+.|++.+|...
T Consensus       101 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          101 FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            888999999999985544333433 7889999999999999876 667788999999999988433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.64  E-value=1.7e-15  Score=134.47  Aligned_cols=139  Identities=19%  Similarity=0.195  Sum_probs=93.7

Q ss_pred             cEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCccc-chhhccCCcCCEEecCCCC
Q 039152           94 RVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQL-PVEVGQLTQLRSLDLRHCS  170 (259)
Q Consensus        94 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~  170 (259)
                      +++++++|.++.+|..+.  ++|++|++++|.+..  +..+..+++|++|++++|++..+ |..++.+++|++|++++| 
T Consensus         3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-   79 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-   79 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-
T ss_pred             ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-
Confidence            467777777777776554  677777777777776  35677777777777777777755 556777777777777774 


Q ss_pred             CceeeCCCCCCCCCcEEEeeccCCCc--cCCCCcCCCCCCeEEeecccccCCccccccccc--ceeecccc
Q 039152          171 NLQVIPLNKHLPNLTSLELEVNDANT--LPRGGLFLEKPERIDLDANVRLKDQDTVQLWGI--EELSLAEL  237 (259)
Q Consensus       171 ~~~~lp~~~~l~~L~~L~l~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L--~~L~l~~~  237 (259)
                      .+..+|.. .+++|++|++++|.++.  +|..++.+++|++|++++|.... .....+++|  +.|++++|
T Consensus        80 ~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L~L~~L~l~~n  148 (520)
T 2z7x_B           80 KLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLG  148 (520)
T ss_dssp             CCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-GGGGGGTTSCEEEEEEEEC
T ss_pred             ceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch-hhccccccceeeEEEeecc
Confidence            44566665 77777777777777754  45666777777777777764322 122225555  77777766

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.64  E-value=8e-16  Score=127.99  Aligned_cols=172  Identities=13%  Similarity=0.072  Sum_probs=134.5

Q ss_pred             cccHHHH-hCCCCccEEEcCCCCCCC-Cc----hhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcc--
Q 039152           81 AIPQNLL-RSMLQVRVLDLTDMNLLS-LP----SSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQ--  150 (259)
Q Consensus        81 ~l~~~~~-~~l~~L~~L~l~~~~~~~-lp----~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~--  150 (259)
                      ..|..++ ..+++|++|++++|.+.. .+    ..+..+++|++|++++|.+..  +..++.+++|++|++++|++..  
T Consensus       106 ~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  185 (310)
T 4glp_A          106 TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGER  185 (310)
T ss_dssp             CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHH
T ss_pred             chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccch
Confidence            4444433 689999999999999984 23    345679999999999999988  4688899999999999998753  


Q ss_pred             -cchh--hccCCcCCEEecCCCCCceeeCCC-----CCCCCCcEEEeeccCCCcc-CCCCcCC---CCCCeEEeeccccc
Q 039152          151 -LPVE--VGQLTQLRSLDLRHCSNLQVIPLN-----KHLPNLTSLELEVNDANTL-PRGGLFL---EKPERIDLDANVRL  218 (259)
Q Consensus       151 -lp~~--i~~l~~L~~L~l~~~~~~~~lp~~-----~~l~~L~~L~l~~~~~~~~-p~~~~~l---~~L~~L~l~~~~~~  218 (259)
                       ++..  ++.+++|++|++++|. +..++..     ..+++|++|++++|.++.. |..++.+   ++|+.|++++|...
T Consensus       186 ~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          186 GLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE  264 (310)
T ss_dssp             HHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred             hhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence             4333  4689999999999964 4444432     5779999999999999866 8777766   69999999999655


Q ss_pred             CCcccccccccceeeccccchhhhhhhhhhhhcccccccCC
Q 039152          219 KDQDTVQLWGIEELSLAELLDHIKNFVNKLVKVGSSQLKYL  259 (259)
Q Consensus       219 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~L  259 (259)
                      ..+..+ .++|+.|++++|  .+..+|.   ...+++|+.|
T Consensus       265 ~lp~~~-~~~L~~L~Ls~N--~l~~~~~---~~~l~~L~~L  299 (310)
T 4glp_A          265 QVPKGL-PAKLRVLDLSSN--RLNRAPQ---PDELPEVDNL  299 (310)
T ss_dssp             SCCSCC-CSCCSCEECCSC--CCCSCCC---TTSCCCCSCE
T ss_pred             chhhhh-cCCCCEEECCCC--cCCCCch---hhhCCCccEE
Confidence            555544 389999999999  7777654   3467777754

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.63  E-value=2.6e-15  Score=133.31  Aligned_cols=149  Identities=21%  Similarity=0.214  Sum_probs=117.1

Q ss_pred             hCCCCccEEEcCCCCCCC-CchhhcCCCCCcEEEecCCCCCC----chhhhCCCCCcEEEecCCCCcc-cchh-hccCCc
Q 039152           88 RSMLQVRVLDLTDMNLLS-LPSSIGLLTNLHTLCLYSCILKD----MAVISDLKKLEILCLHGSSIYQ-LPVE-VGQLTQ  160 (259)
Q Consensus        88 ~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~~~~~~----~~~~~~l~~L~~L~l~~~~i~~-lp~~-i~~l~~  160 (259)
                      ..+++|++|++++|.+.. +|..++.+++|++|++++|.+.+    |..++.+++|++|++++|.+.. +|.. +..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            467888888888888885 67778888888888888888886    3567888888888888888886 7775 677888


Q ss_pred             CCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCccc-cc-ccccceeecccc
Q 039152          161 LRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDT-VQ-LWGIEELSLAEL  237 (259)
Q Consensus       161 L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~-~~-l~~L~~L~l~~~  237 (259)
                      |++|++++|...+..|.. -.++|+.|++++|.++.+|..++.+++|+.|++++|.....+.. +. +++|+.|++++|
T Consensus       401 L~~L~Ls~N~l~~~~~~~-l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N  478 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRC-LPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN  478 (520)
T ss_dssp             CCEEECCSSCCCGGGGGS-CCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEECcCCCCCcchhhh-hcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCC
Confidence            888888887655555542 12688999999998888888888889999999998855555443 33 888999998877

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.63  E-value=3.3e-15  Score=118.22  Aligned_cols=141  Identities=16%  Similarity=0.165  Sum_probs=99.3

Q ss_pred             cEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-c--hhhhCCCCCcEEEecCCCCcccch-hhccCCcCCEEecCCC
Q 039152           94 RVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-M--AVISDLKKLEILCLHGSSIYQLPV-EVGQLTQLRSLDLRHC  169 (259)
Q Consensus        94 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~--~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~  169 (259)
                      +.++++++.++.+|..+.  ..+++|++++|.++. +  ..++.+++|++|++++|.++.++. .+..+++|++|++++|
T Consensus        14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            477788887777776553  346788888888776 2  236778888888888888876665 5777888888888874


Q ss_pred             CCceeeCCC--CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecccccCC-ccccc-ccccceeecccc
Q 039152          170 SNLQVIPLN--KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRLKD-QDTVQ-LWGIEELSLAEL  237 (259)
Q Consensus       170 ~~~~~lp~~--~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~-~~~~~-l~~L~~L~l~~~  237 (259)
                      . +..++..  ..+++|++|++++|.++.+ |..+..+++|+.|++++|..... +..+. +++|+.|+++++
T Consensus        92 ~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A           92 R-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             C-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             c-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence            3 4444443  6778888888888887655 55566778888888887744443 33333 778888888766

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.63  E-value=2.7e-15  Score=127.45  Aligned_cols=154  Identities=27%  Similarity=0.212  Sum_probs=121.8

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCchh-hc-CCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSS-IG-LLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE-  154 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~-~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-  154 (259)
                      ..+|..+   .+.++.|++++|.++.++.. +. .+.+|++|++++|.++.  +..+..+++|++|++++|.+..+|.. 
T Consensus        31 ~~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  107 (361)
T 2xot_A           31 PNVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFL  107 (361)
T ss_dssp             SSCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             CccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHH
Confidence            4567654   34689999999999977654 55 89999999999999998  35789999999999999999988764 


Q ss_pred             hccCCcCCEEecCCCCCceeeCC-C-CCCCCCcEEEeeccCCCccCCCC----cCCCCCCeEEeecccccCCcc-ccc-c
Q 039152          155 VGQLTQLRSLDLRHCSNLQVIPL-N-KHLPNLTSLELEVNDANTLPRGG----LFLEKPERIDLDANVRLKDQD-TVQ-L  226 (259)
Q Consensus       155 i~~l~~L~~L~l~~~~~~~~lp~-~-~~l~~L~~L~l~~~~~~~~p~~~----~~l~~L~~L~l~~~~~~~~~~-~~~-l  226 (259)
                      +..+++|++|++++|. +..++. . ..+++|+.|++++|.++.+|..+    ..+++|+.|++++|.....+. .+. +
T Consensus       108 ~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l  186 (361)
T 2xot_A          108 FSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL  186 (361)
T ss_dssp             TTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHS
T ss_pred             hCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhc
Confidence            8899999999999955 455543 3 88999999999999999888775    468999999999985554432 222 5


Q ss_pred             cc--cceeecccc
Q 039152          227 WG--IEELSLAEL  237 (259)
Q Consensus       227 ~~--L~~L~l~~~  237 (259)
                      +.  |+.|++.+|
T Consensus       187 ~~~~l~~l~l~~N  199 (361)
T 2xot_A          187 PAWVKNGLYLHNN  199 (361)
T ss_dssp             CHHHHTTEECCSS
T ss_pred             cHhhcceEEecCC
Confidence            55  478899876

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.62  E-value=1.9e-15  Score=135.33  Aligned_cols=133  Identities=20%  Similarity=0.171  Sum_probs=63.2

Q ss_pred             CCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCC
Q 039152           90 MLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRH  168 (259)
Q Consensus        90 l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~  168 (259)
                      +++|++|++++|.++.+|. ++.  +|++|++++|.++. |.   .+++|++|++++|.++.+|.   .+++|++|++++
T Consensus        99 l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~  169 (571)
T 3cvr_A           99 PASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRN  169 (571)
T ss_dssp             CTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS
T ss_pred             cCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCC
Confidence            4445555555555554444 333  45555555555544 22   34555555555555554444   344555555555


Q ss_pred             CCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCC-------CeEEeecccccCCccccc-ccccceeecccc
Q 039152          169 CSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKP-------ERIDLDANVRLKDQDTVQ-LWGIEELSLAEL  237 (259)
Q Consensus       169 ~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L-------~~L~l~~~~~~~~~~~~~-l~~L~~L~l~~~  237 (259)
                      |. +..+|. -. ++|+.|++++|.++.+|. +..  +|       +.|++++|.....|..+. +++|+.|++++|
T Consensus       170 N~-L~~lp~-l~-~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N  240 (571)
T 3cvr_A          170 NQ-LTFLPE-LP-ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDN  240 (571)
T ss_dssp             SC-CSCCCC-CC-TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSS
T ss_pred             CC-CCCcch-hh-CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCC
Confidence            32 333443 11 455555555555555554 332  44       555555553333333222 555555555555

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=3.7e-16  Score=115.99  Aligned_cols=124  Identities=23%  Similarity=0.185  Sum_probs=102.7

Q ss_pred             CCCCccEEEcCCCCCC--CCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcc-cchhhccCCcCCEEe
Q 039152           89 SMLQVRVLDLTDMNLL--SLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQ-LPVEVGQLTQLRSLD  165 (259)
Q Consensus        89 ~l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~  165 (259)
                      ..++++.|++++|.+.  .+|..+..+++|++|++++|.++....++.+++|++|++++|.+.. +|..++.+++|++|+
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            3568999999999998  7888889999999999999998887778889999999999999986 777777899999999


Q ss_pred             cCCCCCceeeC--CC-CCCCCCcEEEeeccCCCccCC----CCcCCCCCCeEEee
Q 039152          166 LRHCSNLQVIP--LN-KHLPNLTSLELEVNDANTLPR----GGLFLEKPERIDLD  213 (259)
Q Consensus       166 l~~~~~~~~lp--~~-~~l~~L~~L~l~~~~~~~~p~----~~~~l~~L~~L~l~  213 (259)
                      +++|. +..+|  .. ..+++|++|++++|.++.+|.    .+..+++|+.|+++
T Consensus        95 ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            99854 44443  22 778888888888888887776    45678888887764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.62  E-value=1.3e-14  Score=113.68  Aligned_cols=141  Identities=26%  Similarity=0.305  Sum_probs=118.4

Q ss_pred             cEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccchh-hccCCcCCEEecCCCC
Q 039152           94 RVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLRHCS  170 (259)
Q Consensus        94 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~  170 (259)
                      +.++..++.+..+|..+  ..+|++|++++|.++. + ..++.+++|++|++++|++..+|.. +..+++|++|++++| 
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-   86 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-   86 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-
Confidence            57788888888888765  4689999999999998 4 4578999999999999999988776 689999999999995 


Q ss_pred             CceeeCCC--CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeecccccCCccc-cc-ccccceeecccc
Q 039152          171 NLQVIPLN--KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDANVRLKDQDT-VQ-LWGIEELSLAEL  237 (259)
Q Consensus       171 ~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~~-~~-l~~L~~L~l~~~  237 (259)
                      .+..+|..  ..+++|++|++++|.++.+|.. +..+++|+.|++++|.....+.. +. +++|+.|+++++
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence            45566654  7899999999999999988775 57899999999999955444433 33 999999999988

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.62  E-value=5.3e-16  Score=118.51  Aligned_cols=126  Identities=16%  Similarity=0.178  Sum_probs=85.4

Q ss_pred             hCCCCccEEEcCCCCCCCCchhhcCCC-CCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhh-ccCCcCCEEe
Q 039152           88 RSMLQVRVLDLTDMNLLSLPSSIGLLT-NLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLD  165 (259)
Q Consensus        88 ~~l~~L~~L~l~~~~~~~lp~~i~~l~-~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L~~L~  165 (259)
                      ..+++|+.|++++|.++.+|. +..+. +|++|++++|.++..+.++.+++|++|++++|.+..+|+.+ +.+++|++|+
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            466778888888888877765 44444 78888888887777666777778888888888777776554 6777777777


Q ss_pred             cCCCCCceeeCC--C-CCCCCCcEEEeeccCCCccCCC----CcCCCCCCeEEeecc
Q 039152          166 LRHCSNLQVIPL--N-KHLPNLTSLELEVNDANTLPRG----GLFLEKPERIDLDAN  215 (259)
Q Consensus       166 l~~~~~~~~lp~--~-~~l~~L~~L~l~~~~~~~~p~~----~~~l~~L~~L~l~~~  215 (259)
                      +++| .+..+|.  . ..+++|+.|++++|.++.+|..    +..+++|+.|++..+
T Consensus        95 L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           95 LTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             CCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             CCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            7774 3455554  1 5666667777776666666653    455566665555544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.62  E-value=3.2e-15  Score=140.26  Aligned_cols=126  Identities=28%  Similarity=0.263  Sum_probs=75.6

Q ss_pred             CCCccEEEcCCCCCCCC-chhhcCCCCCcEEEecCCCCCC---chhhhCCCCCcEEEecCCCCccc-chhhccCCcCCEE
Q 039152           90 MLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKD---MAVISDLKKLEILCLHGSSIYQL-PVEVGQLTQLRSL  164 (259)
Q Consensus        90 l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L  164 (259)
                      .+++++|++++|.++.+ |..++++++|++|++++|....   +..++.+++|++|++++|.+..+ |..++++++|++|
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred             CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence            35666666666666643 4556666666666666664333   34566666666666666666644 5556666666666


Q ss_pred             ecCCCCCceeeCCC---CCCCCCcEEEeeccCCCccC--CCCcCCCCCCeEEeecc
Q 039152          165 DLRHCSNLQVIPLN---KHLPNLTSLELEVNDANTLP--RGGLFLEKPERIDLDAN  215 (259)
Q Consensus       165 ~l~~~~~~~~lp~~---~~l~~L~~L~l~~~~~~~~p--~~~~~l~~L~~L~l~~~  215 (259)
                      ++++|......|..   .++++|++|++++|.++.++  ..++++++|+.|++++|
T Consensus       103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence            66665444433332   56666666666666665432  24556666666666665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.61  E-value=7.6e-15  Score=137.67  Aligned_cols=77  Identities=18%  Similarity=0.135  Sum_probs=37.9

Q ss_pred             CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecccccCC-ccccc-ccccceeeccccchhhhhhhhhhhhccccc
Q 039152          179 KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRLKD-QDTVQ-LWGIEELSLAELLDHIKNFVNKLVKVGSSQ  255 (259)
Q Consensus       179 ~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~-~~~~~-l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~  255 (259)
                      ..+++|+.|++++|.++.+ |..+..+++|+.|++++|..... +..+. +++|+.|++++|  .+..++... +.++++
T Consensus       287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N--~i~~~~~~~-~~~l~~  363 (844)
T 3j0a_A          287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN--HIAIIQDQT-FKFLEK  363 (844)
T ss_dssp             SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSC--CCCCCCSSC-SCSCCC
T ss_pred             hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCC--CCCccChhh-hcCCCC
Confidence            3445555555555555433 33344555666666665533222 22222 666666666666  444444432 344555


Q ss_pred             ccC
Q 039152          256 LKY  258 (259)
Q Consensus       256 L~~  258 (259)
                      |++
T Consensus       364 L~~  366 (844)
T 3j0a_A          364 LQT  366 (844)
T ss_dssp             CCE
T ss_pred             CCE
Confidence            543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.61  E-value=4e-15  Score=126.41  Aligned_cols=147  Identities=19%  Similarity=0.150  Sum_probs=75.4

Q ss_pred             cEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-c-hhhh-CCCCCcEEEecCCCCcccch-hhccCCcCCEEecCCC
Q 039152           94 RVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-M-AVIS-DLKKLEILCLHGSSIYQLPV-EVGQLTQLRSLDLRHC  169 (259)
Q Consensus        94 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~-~~~~-~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~  169 (259)
                      ++++++++.++.+|..+.  ..+++|++++|.++. + ..+. .+++|++|++++|++..++. .+..+++|++|++++|
T Consensus        21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            355555555555555432  235555666655555 2 2233 55556666666555555543 3555555666666553


Q ss_pred             CCceeeCCC--CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecccccCCcccc-----cccccceeeccccchhh
Q 039152          170 SNLQVIPLN--KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRLKDQDTV-----QLWGIEELSLAELLDHI  241 (259)
Q Consensus       170 ~~~~~lp~~--~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~  241 (259)
                       .+..++..  ..+++|+.|++++|.++.+ |..+..+++|+.|++++|.....+..+     .+++|+.|+++++  .+
T Consensus        99 -~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N--~l  175 (361)
T 2xot_A           99 -HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN--KL  175 (361)
T ss_dssp             -CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS--CC
T ss_pred             -cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC--CC
Confidence             33444432  4555556666666555544 334445555666666555333332222     1555555665555  44


Q ss_pred             hhhh
Q 039152          242 KNFV  245 (259)
Q Consensus       242 ~~~~  245 (259)
                      ..++
T Consensus       176 ~~l~  179 (361)
T 2xot_A          176 KKLP  179 (361)
T ss_dssp             CCCC
T ss_pred             CccC
Confidence            4444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.61  E-value=2.4e-15  Score=134.82  Aligned_cols=123  Identities=28%  Similarity=0.285  Sum_probs=58.5

Q ss_pred             CccEEEcCCCCCCCCc-hhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccc-hhhccCCcCCEEecC
Q 039152           92 QVRVLDLTDMNLLSLP-SSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLP-VEVGQLTQLRSLDLR  167 (259)
Q Consensus        92 ~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~  167 (259)
                      ++++|++++|.++.++ ..+..+++|++|++++|.++.  +..++.+++|++|++++|.+..+| ..++.+++|++|+++
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  108 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence            4455555555554332 234455555555555555444  233445555555555555554443 234455555555555


Q ss_pred             CCCCceeeCCC--CCCCCCcEEEeeccCCCc--cCCCCcCCCCCCeEEeecc
Q 039152          168 HCSNLQVIPLN--KHLPNLTSLELEVNDANT--LPRGGLFLEKPERIDLDAN  215 (259)
Q Consensus       168 ~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~--~p~~~~~l~~L~~L~l~~~  215 (259)
                      +| .+..++..  +++++|++|++++|.++.  +|..++++++|+.|++++|
T Consensus       109 ~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n  159 (570)
T 2z63_A          109 ET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  159 (570)
T ss_dssp             TS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred             cc-ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC
Confidence            42 23333321  445555555555555432  3444445555555555544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.61  E-value=1e-15  Score=129.46  Aligned_cols=175  Identities=16%  Similarity=0.129  Sum_probs=126.1

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCC-CCch-hhcCCCCCcE-EEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLL-SLPS-SIGLLTNLHT-LCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE  154 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~-~lp~-~i~~l~~L~~-L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~  154 (259)
                      ..+|++.|.++++|++|++++|.+. .+|. .+.+++++.. +.+.+|.+..  +..+..+++|++|++++|++..+|..
T Consensus        43 ~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~  122 (350)
T 4ay9_X           43 RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV  122 (350)
T ss_dssp             SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCC
T ss_pred             CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCch
Confidence            5677777888888888888888875 3544 4677777654 5566677777  45677888888888888888877653


Q ss_pred             -hccCCcCCEEecCCCCCceeeCCC--CC-CCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecc-cccCCcccc--ccc
Q 039152          155 -VGQLTQLRSLDLRHCSNLQVIPLN--KH-LPNLTSLELEVNDANTLPRGGLFLEKPERIDLDAN-VRLKDQDTV--QLW  227 (259)
Q Consensus       155 -i~~l~~L~~L~l~~~~~~~~lp~~--~~-l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~-~~~~~~~~~--~l~  227 (259)
                       +....++..+++.++..+..++..  .. ...++.|++++|.++.+|..++...+|++|.+.++ .....+..+  .++
T Consensus       123 ~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~  202 (350)
T 4ay9_X          123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS  202 (350)
T ss_dssp             TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEE
T ss_pred             hhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCc
Confidence             456667777888776777777764  23 34688899999999989888777888888888754 333444332  388


Q ss_pred             ccceeeccccchhhhhhhhhhhhccccccc
Q 039152          228 GIEELSLAELLDHIKNFVNKLVKVGSSQLK  257 (259)
Q Consensus       228 ~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~  257 (259)
                      +|+.|+++++  .+..+|... +.++++|+
T Consensus       203 ~L~~LdLs~N--~l~~lp~~~-~~~L~~L~  229 (350)
T 4ay9_X          203 GPVILDISRT--RIHSLPSYG-LENLKKLR  229 (350)
T ss_dssp             CCSEEECTTS--CCCCCCSSS-CTTCCEEE
T ss_pred             ccchhhcCCC--CcCccChhh-hccchHhh
Confidence            9999999988  788887653 44444443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.60  E-value=7.1e-15  Score=131.89  Aligned_cols=148  Identities=18%  Similarity=0.164  Sum_probs=118.1

Q ss_pred             hCCCCccEEEcCCCCCCC-CchhhcCCCCCcEEEecCCCCCC----chhhhCCCCCcEEEecCCCCcc-cchh-hccCCc
Q 039152           88 RSMLQVRVLDLTDMNLLS-LPSSIGLLTNLHTLCLYSCILKD----MAVISDLKKLEILCLHGSSIYQ-LPVE-VGQLTQ  160 (259)
Q Consensus        88 ~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~~~~~~----~~~~~~l~~L~~L~l~~~~i~~-lp~~-i~~l~~  160 (259)
                      ..+++|++|++++|.+.. .|..++.+++|++|++++|.++.    +..++.+++|++|++++|.+.. +|.. +..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            467888888888888885 67778888889999998888876    2457788889999998888885 7765 677888


Q ss_pred             CCEEecCCCCCceeeCCCCCC-CCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCccc-cc-ccccceeecccc
Q 039152          161 LRSLDLRHCSNLQVIPLNKHL-PNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDT-VQ-LWGIEELSLAEL  237 (259)
Q Consensus       161 L~~L~l~~~~~~~~lp~~~~l-~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~-~~-l~~L~~L~l~~~  237 (259)
                      |++|++++|...+..|.  .+ ++|+.|++++|.++.+|..++.+++|+.|++++|.....+.. +. +++|+.|++++|
T Consensus       430 L~~L~l~~n~l~~~~~~--~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N  507 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFR--CLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN  507 (562)
T ss_dssp             CCEEECCSSCCCGGGGS--SCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSC
T ss_pred             CCEEECCCCCCCcchhh--hhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCC
Confidence            89999988765555554  33 689999999999988998888899999999998855555543 33 888999999887

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.60  E-value=1e-14  Score=130.82  Aligned_cols=163  Identities=18%  Similarity=0.225  Sum_probs=133.1

Q ss_pred             CCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccc---hhhccCCcCCEEe
Q 039152           91 LQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLP---VEVGQLTQLRSLD  165 (259)
Q Consensus        91 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp---~~i~~l~~L~~L~  165 (259)
                      .+|+.|++++|.+...+. ...+++|++|++++|.+++  +..++.+++|++|++++|++..++   ..++.+++|++|+
T Consensus       331 ~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~  409 (562)
T 3a79_B          331 MNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD  409 (562)
T ss_dssp             CCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEE
T ss_pred             CcceEEEccCCCcccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEE
Confidence            679999999998875442 2678999999999999998  678999999999999999998654   5688999999999


Q ss_pred             cCCCCCceeeCCC--CCCCCCcEEEeeccCCC-ccCCCCcCCCCCCeEEeecccccCCcccc-cccccceeeccccchhh
Q 039152          166 LRHCSNLQVIPLN--KHLPNLTSLELEVNDAN-TLPRGGLFLEKPERIDLDANVRLKDQDTV-QLWGIEELSLAELLDHI  241 (259)
Q Consensus       166 l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~  241 (259)
                      +++|.....+|..  ..+++|+.|++++|.++ .+|..+.  ++|+.|++++|.....+..+ .+++|+.|++++|  .+
T Consensus       410 l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N--~l  485 (562)
T 3a79_B          410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN--QL  485 (562)
T ss_dssp             CTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSS--CC
T ss_pred             CCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCC--CC
Confidence            9997655547765  78899999999999985 5665533  79999999999555555544 4999999999999  77


Q ss_pred             hhhhhhhhhcccccccCC
Q 039152          242 KNFVNKLVKVGSSQLKYL  259 (259)
Q Consensus       242 ~~~~~~l~~~~l~~L~~L  259 (259)
                      ..+|... +..+++|+.|
T Consensus       486 ~~l~~~~-~~~l~~L~~L  502 (562)
T 3a79_B          486 KSVPDGV-FDRLTSLQYI  502 (562)
T ss_dssp             CCCCTTS-TTTCTTCCCE
T ss_pred             CCCCHHH-HhcCCCCCEE
Confidence            7888762 4577877754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.60  E-value=1.8e-16  Score=133.01  Aligned_cols=169  Identities=22%  Similarity=0.222  Sum_probs=127.6

Q ss_pred             hCCCCccEEEcCCCCCCC--CchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCC-CCc--ccchhhccCCc
Q 039152           88 RSMLQVRVLDLTDMNLLS--LPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGS-SIY--QLPVEVGQLTQ  160 (259)
Q Consensus        88 ~~l~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~-~i~--~lp~~i~~l~~  160 (259)
                      ..+++|++|++++|.+..  +|..+..+++|++|++++|.+.+  +..++.+++|++|++++| .+.  .+|..+..+++
T Consensus        90 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~  169 (336)
T 2ast_B           90 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  169 (336)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence            368899999999998873  77788899999999999999886  678888999999999999 677  47777888999


Q ss_pred             CCEEecCCCCCcee--eCCC-CCCC-CCcEEEeeccC--C--CccCCCCcCCCCCCeEEeecccccC--Cccccc-cccc
Q 039152          161 LRSLDLRHCSNLQV--IPLN-KHLP-NLTSLELEVND--A--NTLPRGGLFLEKPERIDLDANVRLK--DQDTVQ-LWGI  229 (259)
Q Consensus       161 L~~L~l~~~~~~~~--lp~~-~~l~-~L~~L~l~~~~--~--~~~p~~~~~l~~L~~L~l~~~~~~~--~~~~~~-l~~L  229 (259)
                      |++|++++|..+..  ++.. ..++ +|++|++++|.  +  ..+|..+..+++|+.|++++|....  ....+. +++|
T Consensus       170 L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L  249 (336)
T 2ast_B          170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL  249 (336)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             CCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence            99999999734442  2322 6778 99999999994  4  3567777789999999999986432  233333 8999


Q ss_pred             ceeeccccchhhh-hhhhhhhhcccccccCC
Q 039152          230 EELSLAELLDHIK-NFVNKLVKVGSSQLKYL  259 (259)
Q Consensus       230 ~~L~l~~~~~~~~-~~~~~l~~~~l~~L~~L  259 (259)
                      +.|++++| ..+. .....  ...+++|+.|
T Consensus       250 ~~L~l~~~-~~~~~~~~~~--l~~~~~L~~L  277 (336)
T 2ast_B          250 QHLSLSRC-YDIIPETLLE--LGEIPTLKTL  277 (336)
T ss_dssp             CEEECTTC-TTCCGGGGGG--GGGCTTCCEE
T ss_pred             CEeeCCCC-CCCCHHHHHH--HhcCCCCCEE
Confidence            99999999 2221 11112  3457777654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.60  E-value=1.1e-14  Score=112.74  Aligned_cols=120  Identities=22%  Similarity=0.259  Sum_probs=95.0

Q ss_pred             cEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-ch--hhhCCCCCcEEEecCCCCccc-chhhccCCcCCEEecCCC
Q 039152           94 RVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MA--VISDLKKLEILCLHGSSIYQL-PVEVGQLTQLRSLDLRHC  169 (259)
Q Consensus        94 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~--~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~  169 (259)
                      ++++++++.++.+|..+..  ++++|++++|.++. ++  .++.+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            6788888888888876644  88888999888887 43  378888899999998888866 566888888999999885


Q ss_pred             CCceeeCCC--CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeeccc
Q 039152          170 SNLQVIPLN--KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANV  216 (259)
Q Consensus       170 ~~~~~lp~~--~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~  216 (259)
                      . +..++..  ..+++|++|++++|.++.+ |..+..+++|+.|++.+|.
T Consensus        89 ~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           89 K-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             C-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             c-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            4 4445443  6788899999999988754 6667788889999988873

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.58  E-value=4.1e-16  Score=133.60  Aligned_cols=170  Identities=15%  Similarity=0.103  Sum_probs=114.8

Q ss_pred             HhCCCCccEEEcCCCCCCC-----CchhhcCCCCCcEEEecCCCCCC--chh----hhCC---------CCCcEEEecCC
Q 039152           87 LRSMLQVRVLDLTDMNLLS-----LPSSIGLLTNLHTLCLYSCILKD--MAV----ISDL---------KKLEILCLHGS  146 (259)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~--~~~----~~~l---------~~L~~L~l~~~  146 (259)
                      |..+++|++|++++|.+..     +|..+..+++|++|++++|.+..  +..    +..+         ++|++|++++|
T Consensus        90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n  169 (386)
T 2ca6_A           90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  169 (386)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence            4677888888888888775     66677788888888888888764  222    3333         78888888888


Q ss_pred             CCc--ccc---hhhccCCcCCEEecCCCCCce-----eeC-CCCCCCCCcEEEeeccCC-----CccCCCCcCCCCCCeE
Q 039152          147 SIY--QLP---VEVGQLTQLRSLDLRHCSNLQ-----VIP-LNKHLPNLTSLELEVNDA-----NTLPRGGLFLEKPERI  210 (259)
Q Consensus       147 ~i~--~lp---~~i~~l~~L~~L~l~~~~~~~-----~lp-~~~~l~~L~~L~l~~~~~-----~~~p~~~~~l~~L~~L  210 (259)
                      ++.  .+|   ..+..+++|++|++++|....     ..| ...++++|++|++++|.+     ..+|..+..+++|+.|
T Consensus       170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L  249 (386)
T 2ca6_A          170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL  249 (386)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence            775  444   456678888888888864321     122 225778888888888887     4567777778888888


Q ss_pred             EeecccccCC-----cccc---cccccceeeccccchhhhh-----hhhhhhhcccccccCC
Q 039152          211 DLDANVRLKD-----QDTV---QLWGIEELSLAELLDHIKN-----FVNKLVKVGSSQLKYL  259 (259)
Q Consensus       211 ~l~~~~~~~~-----~~~~---~l~~L~~L~l~~~~~~~~~-----~~~~l~~~~l~~L~~L  259 (259)
                      ++++|.....     +..+   .+++|+.|++++|  .+..     +|..+ ...+++|++|
T Consensus       250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n--~i~~~g~~~l~~~l-~~~l~~L~~L  308 (386)
T 2ca6_A          250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN--EIELDAVRTLKTVI-DEKMPDLLFL  308 (386)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS--CCBHHHHHHHHHHH-HHHCTTCCEE
T ss_pred             ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC--cCCHHHHHHHHHHH-HhcCCCceEE
Confidence            8887743322     1121   1677888888888  4444     66554 2346666643

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.58  E-value=1.4e-15  Score=127.64  Aligned_cols=153  Identities=18%  Similarity=0.255  Sum_probs=124.8

Q ss_pred             HHHhCCCCccEEEcCCCCCC-CCchhhcCCCCCcEEEecCC-CCCC---chhhhCCCCCcEEEecCC-CCcc--cchhhc
Q 039152           85 NLLRSMLQVRVLDLTDMNLL-SLPSSIGLLTNLHTLCLYSC-ILKD---MAVISDLKKLEILCLHGS-SIYQ--LPVEVG  156 (259)
Q Consensus        85 ~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~-~~~~---~~~~~~l~~L~~L~l~~~-~i~~--lp~~i~  156 (259)
                      ..+..+++|++|++++|.++ ..|..++.+++|++|++++| .+++   +..+..+++|++|++++| .+..  ++..+.
T Consensus       112 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  191 (336)
T 2ast_B          112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA  191 (336)
T ss_dssp             HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred             HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH
Confidence            35689999999999999988 57778999999999999999 6775   456888999999999999 8883  677789


Q ss_pred             cCC-cCCEEecCCCC-Cc--eeeCCC-CCCCCCcEEEeeccC-CC-ccCCCCcCCCCCCeEEeecccccCCc---ccccc
Q 039152          157 QLT-QLRSLDLRHCS-NL--QVIPLN-KHLPNLTSLELEVND-AN-TLPRGGLFLEKPERIDLDANVRLKDQ---DTVQL  226 (259)
Q Consensus       157 ~l~-~L~~L~l~~~~-~~--~~lp~~-~~l~~L~~L~l~~~~-~~-~~p~~~~~l~~L~~L~l~~~~~~~~~---~~~~l  226 (259)
                      .++ +|++|++++|. .+  ..+|.. .++++|+.|++++|. ++ ..+..+..+++|+.|++++|......   ....+
T Consensus       192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~  271 (336)
T 2ast_B          192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI  271 (336)
T ss_dssp             HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred             hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC
Confidence            999 99999999974 22  223332 678999999999999 54 56677889999999999999633332   12239


Q ss_pred             cccceeecccc
Q 039152          227 WGIEELSLAEL  237 (259)
Q Consensus       227 ~~L~~L~l~~~  237 (259)
                      ++|+.|++++|
T Consensus       272 ~~L~~L~l~~~  282 (336)
T 2ast_B          272 PTLKTLQVFGI  282 (336)
T ss_dssp             TTCCEEECTTS
T ss_pred             CCCCEEeccCc
Confidence            99999999988

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=3.4e-14  Score=110.13  Aligned_cols=119  Identities=27%  Similarity=0.312  Sum_probs=82.5

Q ss_pred             cEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccch-hhccCCcCCEEecCCCCC
Q 039152           94 RVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPV-EVGQLTQLRSLDLRHCSN  171 (259)
Q Consensus        94 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~  171 (259)
                      ++++++++.++.+|..+.  .+|++|++++|.++. |..+..+++|++|++++|.++.++. .+..+++|++|++++| .
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-R   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-c
Confidence            467777777777776543  467777777777776 6677777777777777777776654 3677777777777774 3


Q ss_pred             ceeeCCC--CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeecc
Q 039152          172 LQVIPLN--KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDAN  215 (259)
Q Consensus       172 ~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~  215 (259)
                      +..++..  ..+++|++|++++|.++.+|.. +..+++|+.|++.+|
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence            4444443  6677777777777777777664 456777777777766

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=3.3e-15  Score=113.09  Aligned_cols=132  Identities=20%  Similarity=0.210  Sum_probs=110.3

Q ss_pred             CCCCCcEEEecCCCCC--C-chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCCCCCceeeCCC-CCCCCCcEE
Q 039152          112 LLTNLHTLCLYSCILK--D-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSL  187 (259)
Q Consensus       112 ~l~~L~~L~l~~~~~~--~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L  187 (259)
                      ..++|++|++++|.+.  . |..+..+++|++|++++|.+..+ ..+..+++|++|++++|.....+|.. ..+++|++|
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            4578999999999998  4 66678999999999999999987 77999999999999997654445544 569999999


Q ss_pred             EeeccCCCccC--CCCcCCCCCCeEEeecccccCCcc----ccc-ccccceeeccccchhhhhhhh
Q 039152          188 ELEVNDANTLP--RGGLFLEKPERIDLDANVRLKDQD----TVQ-LWGIEELSLAELLDHIKNFVN  246 (259)
Q Consensus       188 ~l~~~~~~~~p--~~~~~l~~L~~L~l~~~~~~~~~~----~~~-l~~L~~L~l~~~~~~~~~~~~  246 (259)
                      ++++|.++.+|  ..+..+++|+.|++++|.....+.    .+. +++|+.|++++|  ....+|.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~  164 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR--EDQEAPD  164 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET--TSCBCCS
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC--Chhhccc
Confidence            99999999876  677899999999999996655544    333 999999999999  6666664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.55  E-value=5e-14  Score=127.45  Aligned_cols=68  Identities=16%  Similarity=0.115  Sum_probs=38.7

Q ss_pred             CCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeeccccchhhhhhhhhhhhcccccccC
Q 039152          182 PNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFVNKLVKVGSSQLKY  258 (259)
Q Consensus       182 ~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~  258 (259)
                      ++|+.|++++|.++.+|.   .+++|+.|++++|.....+.  .+++|+.|++++|  .+..+|..+  ..+++|+.
T Consensus       221 ~~L~~L~Ls~N~L~~lp~---~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N--~L~~lp~~l--~~l~~L~~  288 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLPV---LPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRN--QLTRLPESL--IHLSSETT  288 (622)
T ss_dssp             TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSS--CCCSCCGGG--GGSCTTCE
T ss_pred             CCCCEEEccCCccCcCCC---CCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCC--CCCcCCHHH--hhccccCE
Confidence            455555555555555552   34566666666663333333  4567777777777  555666543  35666654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.55  E-value=4.6e-14  Score=123.43  Aligned_cols=136  Identities=21%  Similarity=0.175  Sum_probs=80.8

Q ss_pred             CCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCCC
Q 039152           91 LQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHC  169 (259)
Q Consensus        91 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~  169 (259)
                      ++|++|++++|.++.+| .++.+++|++|++++|.++. |..   ..+|++|++++|.+..+| +++.+++|++|++++|
T Consensus       131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN  205 (454)
T ss_dssp             TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCC
Confidence            46666666666666666 36667777777777776665 322   236677777777666665 4667777777777764


Q ss_pred             CCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeecccc
Q 039152          170 SNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAEL  237 (259)
Q Consensus       170 ~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~  237 (259)
                      . +..+|.  ..++|++|++++|.++.+|. ++.+++|+.|++++|.....+.  .+++|+.|++++|
T Consensus       206 ~-l~~l~~--~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~N  267 (454)
T 1jl5_A          206 S-LKKLPD--LPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDN  267 (454)
T ss_dssp             C-CSSCCC--CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCS--CCTTCCEEECCSS
T ss_pred             c-CCcCCC--CcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCcccc--cccccCEEECCCC
Confidence            3 333443  23466666666666666664 5666667777776663332221  1244455555444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.55  E-value=1.1e-15  Score=137.10  Aligned_cols=174  Identities=16%  Similarity=0.134  Sum_probs=109.9

Q ss_pred             ccccHHHHhCCCCccEEEcCCCC-------------CC-CCchhhcCCCCCcEEE-ecCCCCCC-c------hhhhCC--
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMN-------------LL-SLPSSIGLLTNLHTLC-LYSCILKD-M------AVISDL--  135 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~-------------~~-~lp~~i~~l~~L~~L~-l~~~~~~~-~------~~~~~l--  135 (259)
                      ..+|..+ +.+++|+.|++++|.             .. ..|..++.+++|+.|+ ++.|.+.. +      ..+..+  
T Consensus       362 ~~Lp~~i-~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~  440 (567)
T 1dce_A          362 TVLQSEL-ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY  440 (567)
T ss_dssp             HHHHHHH-HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHH-HHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCc
Confidence            5788875 678888888886653             22 3456677777777776 45443322 0      011111  


Q ss_pred             CCCcEEEecCCCCcccchhhccCCcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeec
Q 039152          136 KKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDA  214 (259)
Q Consensus       136 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~  214 (259)
                      ..|++|++++|.++.+|. ++.+++|+.|++++| .+..+|.. +.+++|+.|++++|.++.+| .++.+++|+.|++++
T Consensus       441 ~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          441 ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred             cCceEEEecCCCCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence            247777777777777775 777777777777774 34466655 67777777777777777777 667777777777777


Q ss_pred             ccccCC--ccccc-ccccceeeccccchhhhhhhhhhh--hcccccccCC
Q 039152          215 NVRLKD--QDTVQ-LWGIEELSLAELLDHIKNFVNKLV--KVGSSQLKYL  259 (259)
Q Consensus       215 ~~~~~~--~~~~~-l~~L~~L~l~~~~~~~~~~~~~l~--~~~l~~L~~L  259 (259)
                      |.....  +..+. +++|+.|++++|  .+..+|+...  ...+|+|+.|
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N--~l~~~~~~~~~l~~~lp~L~~L  565 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGN--SLCQEEGIQERLAEMLPSVSSI  565 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTS--GGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCC--cCCCCccHHHHHHHHCcccCcc
Confidence            744333  34443 777777777777  5555543211  2346666543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.54  E-value=6.4e-14  Score=125.41  Aligned_cols=156  Identities=22%  Similarity=0.234  Sum_probs=127.8

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccC
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQL  158 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l  158 (259)
                      ..+|..+   +++|++|++++|.++.+|   ..+++|++|++++|.++. |. ++.  +|++|++++|.+..+|.   .+
T Consensus        72 ~~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~---~l  139 (571)
T 3cvr_A           72 SSLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE---LP  139 (571)
T ss_dssp             SCCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC---CC
T ss_pred             CccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC---cC
Confidence            3467654   378999999999999999   457999999999999998 55 555  99999999999999988   68


Q ss_pred             CcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCccccccccc-------ce
Q 039152          159 TQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGI-------EE  231 (259)
Q Consensus       159 ~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L-------~~  231 (259)
                      ++|+.|++++| .+..+|.  .+++|+.|++++|.++.+|. +.  ++|+.|++++|.....+. +. .+|       +.
T Consensus       140 ~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~-~~L~~~~~~L~~  211 (571)
T 3cvr_A          140 ALLEYINADNN-QLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VP-VRNHHSEETEIF  211 (571)
T ss_dssp             TTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC---------CCEE
T ss_pred             ccccEEeCCCC-ccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HH-HhhhcccccceE
Confidence            99999999995 4566886  78999999999999999998 55  999999999995555555 22 367       99


Q ss_pred             eeccccchhhhhhhhhhhhcccccccCC
Q 039152          232 LSLAELLDHIKNFVNKLVKVGSSQLKYL  259 (259)
Q Consensus       232 L~l~~~~~~~~~~~~~l~~~~l~~L~~L  259 (259)
                      |++++|  .+..+|..+.  .+++|++|
T Consensus       212 L~Ls~N--~l~~lp~~l~--~l~~L~~L  235 (571)
T 3cvr_A          212 FRCREN--RITHIPENIL--SLDPTCTI  235 (571)
T ss_dssp             EECCSS--CCCCCCGGGG--GSCTTEEE
T ss_pred             EecCCC--cceecCHHHh--cCCCCCEE
Confidence            999999  8888998763  47777653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.54  E-value=2.6e-14  Score=128.13  Aligned_cols=151  Identities=18%  Similarity=0.161  Sum_probs=115.2

Q ss_pred             cHHHHhCCCCccEEE-cCCCCCCCCch------hhcC--CCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccch
Q 039152           83 PQNLLRSMLQVRVLD-LTDMNLLSLPS------SIGL--LTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPV  153 (259)
Q Consensus        83 ~~~~~~~l~~L~~L~-l~~~~~~~lp~------~i~~--l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~  153 (259)
                      ++..++.+++|+.|+ ++.+.+..++.      .+..  ...|++|++++|.++..+.++.+++|++|++++|.+..+|.
T Consensus       401 ~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~  480 (567)
T 1dce_A          401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPP  480 (567)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCG
T ss_pred             CHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccch
Confidence            344567788888888 55554332221      1111  13589999999999883349999999999999999999999


Q ss_pred             hhccCCcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCcc--CCCCcCCCCCCeEEeecccccCCccccc-----c
Q 039152          154 EVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTL--PRGGLFLEKPERIDLDANVRLKDQDTVQ-----L  226 (259)
Q Consensus       154 ~i~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~--p~~~~~l~~L~~L~l~~~~~~~~~~~~~-----l  226 (259)
                      .++.+++|++|++++| .+..+|..+.+++|+.|++++|.++.+  |..++.+++|+.|++++|.....+....     +
T Consensus       481 ~~~~l~~L~~L~Ls~N-~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~l  559 (567)
T 1dce_A          481 ALAALRCLEVLQASDN-ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML  559 (567)
T ss_dssp             GGGGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHC
T ss_pred             hhhcCCCCCEEECCCC-CCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHC
Confidence            9999999999999985 555678558899999999999999877  8888899999999999985544433221     7


Q ss_pred             cccceeec
Q 039152          227 WGIEELSL  234 (259)
Q Consensus       227 ~~L~~L~l  234 (259)
                      ++|+.|++
T Consensus       560 p~L~~L~l  567 (567)
T 1dce_A          560 PSVSSILT  567 (567)
T ss_dssp             TTCSEEEC
T ss_pred             cccCccCC
Confidence            88888764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.52  E-value=2.7e-14  Score=108.98  Aligned_cols=126  Identities=15%  Similarity=0.101  Sum_probs=107.8

Q ss_pred             hcCCCCCcEEEecCCCCCCchhhhCCC-CCcEEEecCCCCcccchhhccCCcCCEEecCCCCCceeeCCC--CCCCCCcE
Q 039152          110 IGLLTNLHTLCLYSCILKDMAVISDLK-KLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTS  186 (259)
Q Consensus       110 i~~l~~L~~L~l~~~~~~~~~~~~~l~-~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~  186 (259)
                      +.++.+|+.|++++|.++..+.+..+. +|++|++++|.+..+ ..+..+++|++|++++| .+..+|..  ..+++|++
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCE
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCE
Confidence            567889999999999999855566665 999999999999988 67999999999999995 56677754  68899999


Q ss_pred             EEeeccCCCccCC--CCcCCCCCCeEEeecccccCCccc----cc-ccccceeecccc
Q 039152          187 LELEVNDANTLPR--GGLFLEKPERIDLDANVRLKDQDT----VQ-LWGIEELSLAEL  237 (259)
Q Consensus       187 L~l~~~~~~~~p~--~~~~l~~L~~L~l~~~~~~~~~~~----~~-l~~L~~L~l~~~  237 (259)
                      |++++|.++.+|.  .+..+++|+.|++++|.....+..    +. +++|+.|+++++
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            9999999999887  778999999999999966555542    33 999999999998

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.52  E-value=1.1e-13  Score=121.12  Aligned_cols=145  Identities=19%  Similarity=0.165  Sum_probs=97.2

Q ss_pred             CCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCCC
Q 039152           90 MLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHC  169 (259)
Q Consensus        90 l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~  169 (259)
                      +++|++|++++|.+..+|..   .++|++|++++|.+++.+.++.+++|++|++++|+++.+|..+   .+|++|++++|
T Consensus       110 ~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n  183 (454)
T 1jl5_A          110 PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN  183 (454)
T ss_dssp             CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS
T ss_pred             cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCC
Confidence            35677777777766655542   1567777777777777335777777777777777777666543   46777777774


Q ss_pred             CCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeeccccchhhhhhhh
Q 039152          170 SNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFVN  246 (259)
Q Consensus       170 ~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  246 (259)
                       .+..+|..+++++|+.|++++|.++.+|..   .++|+.|++++|.....+....+++|+.|++++|  .+..+|.
T Consensus       184 -~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N--~l~~l~~  254 (454)
T 1jl5_A          184 -QLEELPELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILEELPELQNLPFLTTIYADNN--LLKTLPD  254 (454)
T ss_dssp             -CCSSCCCCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS--CCSSCCS
T ss_pred             -cCCcCccccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCCcccccCCCCCCCEEECCCC--cCCcccc
Confidence             344466557777788888888777777665   3577788888774444454334888888888887  5555543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.51  E-value=8.6e-15  Score=125.34  Aligned_cols=171  Identities=18%  Similarity=0.199  Sum_probs=121.2

Q ss_pred             HhCCCCccEEEcCCCCCC----CCchhh-------cCCCCCcEEEecCCCCCC------chhhhCCCCCcEEEecCCCCc
Q 039152           87 LRSMLQVRVLDLTDMNLL----SLPSSI-------GLLTNLHTLCLYSCILKD------MAVISDLKKLEILCLHGSSIY  149 (259)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~----~lp~~i-------~~l~~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~~~i~  149 (259)
                      |..+++|++|++++|.+.    .+|..+       ..+++|++|++++|.+..      +..+..+++|++|++++|.+.
T Consensus        56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A           56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence            457889999999987555    345444       678999999999999876      356788899999999999886


Q ss_pred             -----ccchhhccC---------CcCCEEecCCCCCc-eeeCCC----CCCCCCcEEEeeccCCC------ccCCCCcCC
Q 039152          150 -----QLPVEVGQL---------TQLRSLDLRHCSNL-QVIPLN----KHLPNLTSLELEVNDAN------TLPRGGLFL  204 (259)
Q Consensus       150 -----~lp~~i~~l---------~~L~~L~l~~~~~~-~~lp~~----~~l~~L~~L~l~~~~~~------~~p~~~~~l  204 (259)
                           .++..+..+         ++|++|++++|... ..++..    ..+++|++|++++|.++      -+|..+..+
T Consensus       136 ~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~  215 (386)
T 2ca6_A          136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC  215 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC
T ss_pred             HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC
Confidence                 233344444         89999999986543 233311    46789999999999987      345477889


Q ss_pred             CCCCeEEeeccccc-----CCccccc-ccccceeeccccchhhhhh-----hhhhhhcccccccCC
Q 039152          205 EKPERIDLDANVRL-----KDQDTVQ-LWGIEELSLAELLDHIKNF-----VNKLVKVGSSQLKYL  259 (259)
Q Consensus       205 ~~L~~L~l~~~~~~-----~~~~~~~-l~~L~~L~l~~~~~~~~~~-----~~~l~~~~l~~L~~L  259 (259)
                      ++|+.|++++|...     ..+..+. +++|+.|++++|  .+...     +..+....+++|++|
T Consensus       216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n--~i~~~~~~~l~~~l~~~~~~~L~~L  279 (386)
T 2ca6_A          216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC--LLSARGAAAVVDAFSKLENIGLQTL  279 (386)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC--CCCHHHHHHHHHHHHTCSSCCCCEE
T ss_pred             CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC--CCchhhHHHHHHHHhhccCCCeEEE
Confidence            99999999988542     1233333 889999999998  44433     443321336777653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.51  E-value=8.8e-14  Score=125.83  Aligned_cols=132  Identities=22%  Similarity=0.214  Sum_probs=78.0

Q ss_pred             CCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecC
Q 039152           89 SMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLR  167 (259)
Q Consensus        89 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~  167 (259)
                      .+++|++|++++|.++.+|.   .+++|++|++++|.++. +.   .+.+|++|++++|.+..+|..   +++|++|+++
T Consensus        79 ~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls  149 (622)
T 3g06_A           79 LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVS  149 (622)
T ss_dssp             CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECC
T ss_pred             cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECc
Confidence            35566666666666666665   45666666666666666 33   456666666666666666653   3666777777


Q ss_pred             CCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeecccc
Q 039152          168 HCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAEL  237 (259)
Q Consensus       168 ~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~  237 (259)
                      +| .+..+|.  .+++|+.|++++|.++.+|   ..+++|+.|++++|.....+..  +++|+.|++++|
T Consensus       150 ~N-~l~~l~~--~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N  211 (622)
T 3g06_A          150 DN-QLASLPA--LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNN  211 (622)
T ss_dssp             SS-CCSCCCC--CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSS
T ss_pred             CC-cCCCcCC--ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCC
Confidence            64 3444543  4556666666666666666   2357777888777743332221  344455555444

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.51  E-value=2.7e-13  Score=103.42  Aligned_cols=124  Identities=28%  Similarity=0.312  Sum_probs=98.6

Q ss_pred             ccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccchh-hccCCcCCEEecCCC
Q 039152           93 VRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLRHC  169 (259)
Q Consensus        93 L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~  169 (259)
                      .+.++++++.+..+|..+.  .+|++|++++|.++. + ..++.+++|++|++++|.+..+|.. +..+++|++|++++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            4678888888888886553  688999999998888 4 4568889999999999988888765 678899999999885


Q ss_pred             CCceeeCCC--CCCCCCcEEEeeccCCCccCCCC-cCCCCCCeEEeecccccC
Q 039152          170 SNLQVIPLN--KHLPNLTSLELEVNDANTLPRGG-LFLEKPERIDLDANVRLK  219 (259)
Q Consensus       170 ~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~~-~~l~~L~~L~l~~~~~~~  219 (259)
                       .+..+|..  ..+++|++|++++|.++.+|..+ ..+++|+.|++.+|....
T Consensus        87 -~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           87 -KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             -CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             -CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence             45556553  67889999999999998888764 578899999999884433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.51  E-value=3.2e-14  Score=131.23  Aligned_cols=113  Identities=25%  Similarity=0.321  Sum_probs=71.7

Q ss_pred             ccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCCc
Q 039152           82 IPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQ  160 (259)
Q Consensus        82 l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~  160 (259)
                      ++++.|..++.|+.|++++|.+..+|..+..+++|++|+|++|.++. |..++.+++|++|+|++|.++.+|..++.+++
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~  294 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ  294 (727)
T ss_dssp             -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred             cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence            34445566667777777777666666666666777777777776666 56666677777777777766666666777777


Q ss_pred             CCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCC
Q 039152          161 LRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDAN  195 (259)
Q Consensus       161 L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~  195 (259)
                      |++|++++| .+..+|.. +.+++|+.|++++|.++
T Consensus       295 L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          295 LKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             CSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred             CCEEECCCC-CCCccChhhhcCCCccEEeCCCCccC
Confidence            777777664 44566654 66667777777776664

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.50  E-value=4e-14  Score=130.54  Aligned_cols=118  Identities=25%  Similarity=0.201  Sum_probs=97.9

Q ss_pred             CCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCCCCCceeeCCC
Q 039152          100 DMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN  178 (259)
Q Consensus       100 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~  178 (259)
                      .+.+...|..+..+.+|+.|+|++|.+.. +..+..+++|++|+|++|.+..+|..++.+++|++|++++|. +..+|..
T Consensus       210 ~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~  288 (727)
T 4b8c_D          210 ENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAE  288 (727)
T ss_dssp             ------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSS
T ss_pred             ccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChh
Confidence            34444457778899999999999999998 788889999999999999999999999999999999999965 5588876


Q ss_pred             -CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeeccccc
Q 039152          179 -KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRL  218 (259)
Q Consensus       179 -~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~  218 (259)
                       +.+++|++|++++|.++.+|..++.+++|+.|++++|...
T Consensus       289 ~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          289 LGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             GGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred             hcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence             8899999999999999999999999999999999988443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.49  E-value=1.6e-14  Score=107.02  Aligned_cols=123  Identities=20%  Similarity=0.193  Sum_probs=91.4

Q ss_pred             CCCCCcEEEecCCCCC--C-chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCCCCCceeeCCC-CCCCCCcEE
Q 039152          112 LLTNLHTLCLYSCILK--D-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSL  187 (259)
Q Consensus       112 ~l~~L~~L~l~~~~~~--~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L  187 (259)
                      ..++|+.|++++|.+.  . |..++.+++|++|++++|.+..+ ..++.+++|++|++++|.....+|.. ..+++|++|
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            3467888999999888  3 66678888899999998888877 66888888888888886544334443 458888888


Q ss_pred             EeeccCCCccC--CCCcCCCCCCeEEeecccccCCcc----ccc-ccccceeecc
Q 039152          188 ELEVNDANTLP--RGGLFLEKPERIDLDANVRLKDQD----TVQ-LWGIEELSLA  235 (259)
Q Consensus       188 ~l~~~~~~~~p--~~~~~l~~L~~L~l~~~~~~~~~~----~~~-l~~L~~L~l~  235 (259)
                      ++++|.++.+|  ..+..+++|+.|++++|.....+.    .+. +++|+.|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            88888887654  667788888888888885444433    222 7788887765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.48  E-value=1.4e-13  Score=106.59  Aligned_cols=113  Identities=29%  Similarity=0.316  Sum_probs=96.7

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCchh--hcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSS--IGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE-  154 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~--i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-  154 (259)
                      ..+|..++   +++++|++++|.+..++..  ++.+++|++|++++|.++.  +..++.+++|++|++++|++..++.. 
T Consensus        21 ~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~   97 (192)
T 1w8a_A           21 KEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM   97 (192)
T ss_dssp             SSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSS
T ss_pred             CcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHH
Confidence            45666543   3899999999999987753  8999999999999999998  57899999999999999999977665 


Q ss_pred             hccCCcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCC
Q 039152          155 VGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDAN  195 (259)
Q Consensus       155 i~~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~  195 (259)
                      +..+++|++|++++|......|.. ..+++|++|++++|.+.
T Consensus        98 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           98 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             hcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            889999999999996555544544 78999999999999986

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.47  E-value=3.4e-14  Score=120.64  Aligned_cols=158  Identities=16%  Similarity=0.075  Sum_probs=96.1

Q ss_pred             HHHhCCC-CccEEEcCCCCCCCC-chhhcCC-----CCCcEEEecCCCCCC--chh----hhCC-CCCcEEEecCCCCcc
Q 039152           85 NLLRSML-QVRVLDLTDMNLLSL-PSSIGLL-----TNLHTLCLYSCILKD--MAV----ISDL-KKLEILCLHGSSIYQ  150 (259)
Q Consensus        85 ~~~~~l~-~L~~L~l~~~~~~~l-p~~i~~l-----~~L~~L~l~~~~~~~--~~~----~~~l-~~L~~L~l~~~~i~~  150 (259)
                      ..|.+++ +|++|++++|.+... +..+..+     ++|++|++++|.++.  +..    +..+ ++|++|++++|.+..
T Consensus        44 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  123 (362)
T 3goz_A           44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS  123 (362)
T ss_dssp             HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred             HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence            4556777 788888888877743 4445554     778888888888765  232    4444 778888888887775


Q ss_pred             cchh-----hcc-CCcCCEEecCCCCCce----eeCCC-CCC-CCCcEEEeeccCCCccCC-----CCcCC-CCCCeEEe
Q 039152          151 LPVE-----VGQ-LTQLRSLDLRHCSNLQ----VIPLN-KHL-PNLTSLELEVNDANTLPR-----GGLFL-EKPERIDL  212 (259)
Q Consensus       151 lp~~-----i~~-l~~L~~L~l~~~~~~~----~lp~~-~~l-~~L~~L~l~~~~~~~~p~-----~~~~l-~~L~~L~l  212 (259)
                      .+..     +.. .++|++|++++|....    .++.. ..+ ++|++|++++|.++..+.     .+..+ ++|+.|++
T Consensus       124 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L  203 (362)
T 3goz_A          124 KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDL  203 (362)
T ss_dssp             SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred             HHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEEC
Confidence            4432     223 2578888888754321    11111 233 378888888887754332     23344 48888888


Q ss_pred             ecccccCC-----ccccc--ccccceeeccccchhhhhh
Q 039152          213 DANVRLKD-----QDTVQ--LWGIEELSLAELLDHIKNF  244 (259)
Q Consensus       213 ~~~~~~~~-----~~~~~--l~~L~~L~l~~~~~~~~~~  244 (259)
                      ++|.....     +..+.  .++|+.|++++|  .+...
T Consensus       204 s~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N--~l~~~  240 (362)
T 3goz_A          204 SANLLGLKSYAELAYIFSSIPNHVVSLNLCLN--CLHGP  240 (362)
T ss_dssp             TTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS--CCCCC
T ss_pred             CCCCCChhHHHHHHHHHhcCCCCceEEECcCC--CCCcH
Confidence            88744332     11111  347888888888  44443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.47  E-value=4e-13  Score=104.04  Aligned_cols=112  Identities=21%  Similarity=0.290  Sum_probs=98.1

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccch-hhc
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPV-EVG  156 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~-~i~  156 (259)
                      ..+|..+   .+++++|++++|.++.+|..+..+++|++|++++|.++.  +..+..+++|++|++++|.+..+|. .+.
T Consensus        23 ~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~   99 (193)
T 2wfh_A           23 KVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD   99 (193)
T ss_dssp             SSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred             CcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhC
Confidence            4566654   358999999999999999999999999999999999998  4679999999999999999998876 589


Q ss_pred             cCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCC
Q 039152          157 QLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDAN  195 (259)
Q Consensus       157 ~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~  195 (259)
                      .+++|++|++++ +.+..+|..  ..+++|+.|++++|.+.
T Consensus       100 ~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          100 GLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             TCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCee
Confidence            999999999999 456677764  78999999999999875

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.43  E-value=3.2e-13  Score=114.12  Aligned_cols=155  Identities=19%  Similarity=0.177  Sum_probs=101.0

Q ss_pred             cccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecC-CCCCC-c-hhhhCC-CCCcEEEecCCCCcccchhh
Q 039152           81 AIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYS-CILKD-M-AVISDL-KKLEILCLHGSSIYQLPVEV  155 (259)
Q Consensus        81 ~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~-~~~~~-~-~~~~~l-~~L~~L~l~~~~i~~lp~~i  155 (259)
                      .++++.|..+++|++|++++|.+..+|. .+....++.+|++.+ +.+.. + ..+..+ ..+++|++++|+++.+|..+
T Consensus        94 ~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~  173 (350)
T 4ay9_X           94 YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA  173 (350)
T ss_dssp             EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS
T ss_pred             ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh
Confidence            3444445555555555555555554433 233344445555533 23333 2 233444 35778888888888888877


Q ss_pred             ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCC-ccccccccccee
Q 039152          156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKD-QDTVQLWGIEEL  232 (259)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L  232 (259)
                      ....+|+.+++.+|+.++.+|..  ..+++|+.|++++|.++.+|..  .+.+|+.|.+.++...+. |..-.+++|+.+
T Consensus       174 f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l  251 (350)
T 4ay9_X          174 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEA  251 (350)
T ss_dssp             STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEE
T ss_pred             ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhC
Confidence            77778888888877888888875  6788888888888888888865  467778888777755554 333338888888


Q ss_pred             ecccc
Q 039152          233 SLAEL  237 (259)
Q Consensus       233 ~l~~~  237 (259)
                      ++.+.
T Consensus       252 ~l~~~  256 (350)
T 4ay9_X          252 SLTYP  256 (350)
T ss_dssp             ECSCH
T ss_pred             cCCCC
Confidence            87654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.43  E-value=7.2e-16  Score=120.02  Aligned_cols=110  Identities=19%  Similarity=0.192  Sum_probs=59.8

Q ss_pred             CCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCCCCCceeeCCCCCCCCC
Q 039152          105 SLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNL  184 (259)
Q Consensus       105 ~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~l~~L  184 (259)
                      .+|..++.+++|++|++++|.+...+.++.+++|++|++++|.+..+|..+..+++|++|++++| .+..+|....+++|
T Consensus        39 ~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~~~~~l~~L  117 (198)
T 1ds9_A           39 KMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLSGIEKLVNL  117 (198)
T ss_dssp             CCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHHHHHHHHHS
T ss_pred             hhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCCccccCCCC
Confidence            34445555556666666655555522555555666666666555555555555555666666553 23333322445556


Q ss_pred             cEEEeeccCCCccCC--CCcCCCCCCeEEeecc
Q 039152          185 TSLELEVNDANTLPR--GGLFLEKPERIDLDAN  215 (259)
Q Consensus       185 ~~L~l~~~~~~~~p~--~~~~l~~L~~L~l~~~  215 (259)
                      ++|++++|.++.+|.  .+..+++|+.|++.+|
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence            666666666554443  3455666666666655

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.41  E-value=8.9e-13  Score=100.38  Aligned_cols=105  Identities=27%  Similarity=0.376  Sum_probs=83.2

Q ss_pred             ccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-hccCCcCCEEecCCC
Q 039152           93 VRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLRHC  169 (259)
Q Consensus        93 L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~  169 (259)
                      -+.++++++.+..+|..+.  .+|++|++++|.++.  +..++.+++|++|++++|+++.+|.. +..+++|++|++++|
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            3678889988888888664  788999999999888  45788889999999999988888776 578888888888884


Q ss_pred             CCceeeCCC--CCCCCCcEEEeeccCCCccCCC
Q 039152          170 SNLQVIPLN--KHLPNLTSLELEVNDANTLPRG  200 (259)
Q Consensus       170 ~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~  200 (259)
                       .+..+|..  ..+++|++|++++|.+...|..
T Consensus        92 -~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~  123 (174)
T 2r9u_A           92 -HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD  123 (174)
T ss_dssp             -CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred             -ccceeCHHHhccccCCCEEEeCCCCccccccc
Confidence             45566653  6778888888888887766553

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=2.2e-15  Score=117.21  Aligned_cols=128  Identities=20%  Similarity=0.184  Sum_probs=106.6

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccC
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQL  158 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l  158 (259)
                      ..+|.. |..+++|++|++++|.+..+| .+..+++|++|++++|.++. |..+..+++|++|++++|.+..+| .++.+
T Consensus        38 ~~l~~~-~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l  114 (198)
T 1ds9_A           38 EKMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKL  114 (198)
T ss_dssp             CCCHHH-HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHH
T ss_pred             hhhhHH-HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccC
Confidence            344554 679999999999999999988 79999999999999999998 777778899999999999999887 68999


Q ss_pred             CcCCEEecCCCCCceeeCC---CCCCCCCcEEEeeccCCCcc-CCC----------CcCCCCCCeEE
Q 039152          159 TQLRSLDLRHCSNLQVIPL---NKHLPNLTSLELEVNDANTL-PRG----------GLFLEKPERID  211 (259)
Q Consensus       159 ~~L~~L~l~~~~~~~~lp~---~~~l~~L~~L~l~~~~~~~~-p~~----------~~~l~~L~~L~  211 (259)
                      ++|++|++++|. +..++.   ...+++|++|++++|.++.. |..          +..+++|+.|+
T Consensus       115 ~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          115 VNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            999999999954 444443   27899999999999998644 332          55777777776

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.40  E-value=1.9e-12  Score=98.13  Aligned_cols=105  Identities=29%  Similarity=0.352  Sum_probs=82.5

Q ss_pred             CccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-hccCCcCCEEecCC
Q 039152           92 QVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLRH  168 (259)
Q Consensus        92 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~  168 (259)
                      ..+.++++++.++.+|..+.  .+|++|++++|.++.  +..+..+++|++|++++|+++.+|.. +..+++|++|++++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            35788999999988887663  788999999999888  46688889999999999988888776 57888888888888


Q ss_pred             CCCceeeCCC--CCCCCCcEEEeeccCCCccCC
Q 039152          169 CSNLQVIPLN--KHLPNLTSLELEVNDANTLPR  199 (259)
Q Consensus       169 ~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~  199 (259)
                      | .+..+|..  ..+++|++|++++|.+...+.
T Consensus        88 N-~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           88 N-QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             S-CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             C-ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            4 45556553  677888888888887764443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.38  E-value=5.5e-14  Score=122.80  Aligned_cols=149  Identities=18%  Similarity=0.029  Sum_probs=93.2

Q ss_pred             CCCCccEEEcCCCCCCC-----CchhhcCCCCCcEEEecCCCCCC--c----hhh-hCCCCCcEEEecCCCCcc-----c
Q 039152           89 SMLQVRVLDLTDMNLLS-----LPSSIGLLTNLHTLCLYSCILKD--M----AVI-SDLKKLEILCLHGSSIYQ-----L  151 (259)
Q Consensus        89 ~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~--~----~~~-~~l~~L~~L~l~~~~i~~-----l  151 (259)
                      ..++|++|++++|.++.     ++..+..+++|++|++++|.+..  .    +.+ ..+++|++|++++|.+..     +
T Consensus       197 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l  276 (461)
T 1z7x_W          197 SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL  276 (461)
T ss_dssp             SCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred             CCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH
Confidence            35577777777777664     45566677788888888877665  1    222 246788888888887774     6


Q ss_pred             chhhccCCcCCEEecCCCCCceeeCCC------CCCCCCcEEEeeccCCCc-----cCCCCcCCCCCCeEEeecccccCC
Q 039152          152 PVEVGQLTQLRSLDLRHCSNLQVIPLN------KHLPNLTSLELEVNDANT-----LPRGGLFLEKPERIDLDANVRLKD  220 (259)
Q Consensus       152 p~~i~~l~~L~~L~l~~~~~~~~lp~~------~~l~~L~~L~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~~  220 (259)
                      +..+..+++|++|++++|......+..      ...++|++|++++|.++.     +|..+..+++|+.|++++|.....
T Consensus       277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  356 (461)
T 1z7x_W          277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA  356 (461)
T ss_dssp             HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence            677777888888888875432111110      233577777777777653     344555667777777777632222


Q ss_pred             -ccccc------ccccceeecccc
Q 039152          221 -QDTVQ------LWGIEELSLAEL  237 (259)
Q Consensus       221 -~~~~~------l~~L~~L~l~~~  237 (259)
                       ...+.      .++|+.|++++|
T Consensus       357 ~~~~l~~~l~~~~~~L~~L~L~~n  380 (461)
T 1z7x_W          357 GVRELCQGLGQPGSVLRVLWLADC  380 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cHHHHHHHHcCCCCceEEEECCCC
Confidence             11111      346777777777

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.38  E-value=4.8e-14  Score=123.17  Aligned_cols=151  Identities=21%  Similarity=0.185  Sum_probs=72.3

Q ss_pred             HhCCCCccEEEcCCCCCCC-Cchhh-cCCC----CCcEEEecCCCCCC------chhhhCCCCCcEEEecCCCCccc-ch
Q 039152           87 LRSMLQVRVLDLTDMNLLS-LPSSI-GLLT----NLHTLCLYSCILKD------MAVISDLKKLEILCLHGSSIYQL-PV  153 (259)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~~-lp~~i-~~l~----~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~~~i~~l-p~  153 (259)
                      +..+++|++|++++|.+.. .+..+ ..+.    +|++|++++|.+..      +..+..+++|++|++++|.+... +.
T Consensus        52 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  131 (461)
T 1z7x_W           52 LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ  131 (461)
T ss_dssp             HHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH
T ss_pred             HHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH
Confidence            3455566666666655542 11111 1233    46666666665552      34455556666666666655411 11


Q ss_pred             hhc-----cCCcCCEEecCCCCCceee----CCC-CCCCCCcEEEeeccCCCcc-CCCCc-----CCCCCCeEEeecccc
Q 039152          154 EVG-----QLTQLRSLDLRHCSNLQVI----PLN-KHLPNLTSLELEVNDANTL-PRGGL-----FLEKPERIDLDANVR  217 (259)
Q Consensus       154 ~i~-----~l~~L~~L~l~~~~~~~~l----p~~-~~l~~L~~L~l~~~~~~~~-p~~~~-----~l~~L~~L~l~~~~~  217 (259)
                      .+.     ..++|++|++++|......    +.. ..+++|++|++++|.++.. +..+.     ..++|+.|++++|..
T Consensus       132 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  211 (461)
T 1z7x_W          132 LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV  211 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred             HHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCC
Confidence            111     1344666666654322111    110 3445666666666665421 11111     244666777766633


Q ss_pred             cCC-----ccccc-ccccceeecccc
Q 039152          218 LKD-----QDTVQ-LWGIEELSLAEL  237 (259)
Q Consensus       218 ~~~-----~~~~~-l~~L~~L~l~~~  237 (259)
                      ...     +..+. +++|+.|++++|
T Consensus       212 ~~~~~~~l~~~l~~~~~L~~L~Ls~n  237 (461)
T 1z7x_W          212 TSDNCRDLCGIVASKASLRELALGSN  237 (461)
T ss_dssp             BTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred             cHHHHHHHHHHHHhCCCccEEeccCC
Confidence            322     11111 677777777777

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.38  E-value=1.3e-13  Score=116.98  Aligned_cols=79  Identities=19%  Similarity=0.184  Sum_probs=35.4

Q ss_pred             CCccEEEcCCCCCCCC-chh----hcCC-CCCcEEEecCCCCCC--chh----hhC-CCCCcEEEecCCCCc-----ccc
Q 039152           91 LQVRVLDLTDMNLLSL-PSS----IGLL-TNLHTLCLYSCILKD--MAV----ISD-LKKLEILCLHGSSIY-----QLP  152 (259)
Q Consensus        91 ~~L~~L~l~~~~~~~l-p~~----i~~l-~~L~~L~l~~~~~~~--~~~----~~~-l~~L~~L~l~~~~i~-----~lp  152 (259)
                      ++|++|++++|.++.. +..    +..+ ++|++|++++|.++.  +..    +.. .++|++|++++|.+.     .++
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  159 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI  159 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence            5555555555555422 221    2222 455555555555544  112    222 135555555555444     223


Q ss_pred             hhhccCC-cCCEEecCCC
Q 039152          153 VEVGQLT-QLRSLDLRHC  169 (259)
Q Consensus       153 ~~i~~l~-~L~~L~l~~~  169 (259)
                      ..+..++ +|++|++++|
T Consensus       160 ~~l~~~~~~L~~L~Ls~n  177 (362)
T 3goz_A          160 QILAAIPANVNSLNLRGN  177 (362)
T ss_dssp             HHHHTSCTTCCEEECTTS
T ss_pred             HHHhcCCccccEeeecCC
Confidence            3333333 5555555553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.36  E-value=6.2e-12  Score=95.77  Aligned_cols=114  Identities=30%  Similarity=0.406  Sum_probs=96.1

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccchh-h
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPVE-V  155 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-i  155 (259)
                      ..+|..+   .++|+.|++++|.+..+|. .++.+++|++|++++|.++. + ..++.+++|++|++++|.+..+|.. +
T Consensus        20 ~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~   96 (177)
T 2o6r_A           20 TSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVF   96 (177)
T ss_dssp             SSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             ccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHh
Confidence            4456543   4689999999999998766 46899999999999999998 4 4578999999999999999988776 6


Q ss_pred             ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCcc
Q 039152          156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTL  197 (259)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~  197 (259)
                      ..+++|++|++++| .+..+|..  ..+++|++|++++|.+...
T Consensus        97 ~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           97 DKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             hCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            89999999999995 55667765  6789999999999988643

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.28  E-value=4e-12  Score=114.39  Aligned_cols=129  Identities=16%  Similarity=0.118  Sum_probs=85.0

Q ss_pred             hCCCCccEEEcCCCCCCC-----CchhhcCCCCCcEEEecCCCCCC------chhhhCCCCCcEEEecCCCCcccchhhc
Q 039152           88 RSMLQVRVLDLTDMNLLS-----LPSSIGLLTNLHTLCLYSCILKD------MAVISDLKKLEILCLHGSSIYQLPVEVG  156 (259)
Q Consensus        88 ~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~~~i~~lp~~i~  156 (259)
                      .++++|++|++++|.+..     ++.....+++|++|++++|.+..      +..+..+++|++|++++|.+..+|..+.
T Consensus       161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~  240 (592)
T 3ogk_B          161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK  240 (592)
T ss_dssp             HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred             hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence            467888888888887652     33345567888888888888762      3445678889999998888888887788


Q ss_pred             cCCcCCEEecCCCCCceeeC---CC-CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeeccc
Q 039152          157 QLTQLRSLDLRHCSNLQVIP---LN-KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANV  216 (259)
Q Consensus       157 ~l~~L~~L~l~~~~~~~~lp---~~-~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~  216 (259)
                      .+++|+.|+++.+......+   .. ..+++|+.|+++++....+|..+..+++|+.|++++|.
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~  304 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL  304 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence            88888888887532211100   01 45556666666555444555555556666666666554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.25  E-value=3.6e-11  Score=91.39  Aligned_cols=102  Identities=26%  Similarity=0.265  Sum_probs=87.4

Q ss_pred             CcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCccc-chhhccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeec
Q 039152          116 LHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQL-PVEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEV  191 (259)
Q Consensus       116 L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~  191 (259)
                      -+.++++++.+.. |..+.  ++|++|++++|.+..+ |..+..+++|++|++++| .+..+|..  .++++|++|++++
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence            4789999999988 66554  8999999999999988 456899999999999995 66777765  6899999999999


Q ss_pred             cCCCccCCC-CcCCCCCCeEEeecccccCC
Q 039152          192 NDANTLPRG-GLFLEKPERIDLDANVRLKD  220 (259)
Q Consensus       192 ~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~  220 (259)
                      |.++.+|.. +..+++|+.|++.+|.....
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            999998876 77899999999999854444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.24  E-value=4.6e-11  Score=90.43  Aligned_cols=103  Identities=30%  Similarity=0.282  Sum_probs=87.2

Q ss_pred             CCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCccc-chhhccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEee
Q 039152          115 NLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQL-PVEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELE  190 (259)
Q Consensus       115 ~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~  190 (259)
                      ..+.+++++|.++. |..+.  ++|++|++++|.++.+ |..+..+++|++|++++| .+..+|..  ..+++|++|+++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECC
Confidence            46889999999998 65553  8999999999999988 455899999999999995 56677765  789999999999


Q ss_pred             ccCCCccCCC-CcCCCCCCeEEeecccccCC
Q 039152          191 VNDANTLPRG-GLFLEKPERIDLDANVRLKD  220 (259)
Q Consensus       191 ~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~  220 (259)
                      +|.++.+|.. +..+++|+.|++++|.....
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            9999988875 67899999999999844433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.22  E-value=2.2e-11  Score=101.90  Aligned_cols=174  Identities=15%  Similarity=0.111  Sum_probs=124.9

Q ss_pred             ccccHHHHhC--------CCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCC
Q 039152           80 FAIPQNLLRS--------MLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSI  148 (259)
Q Consensus        80 ~~l~~~~~~~--------l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i  148 (259)
                      ..+|+..|.+        +++|+.+.+.. .++.+++ .|.+|.+|+.+++..|.+..  +..+..+.++.++....+..
T Consensus        82 ~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~  160 (329)
T 3sb4_A           82 NFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDA  160 (329)
T ss_dssp             TEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHH
T ss_pred             cccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhh
Confidence            4788888888        99999999988 7887765 58889999999999888765  34555555555555433100


Q ss_pred             -------c--------------------ccchh---------------------------h-ccCCcCCEEecCCCCCce
Q 039152          149 -------Y--------------------QLPVE---------------------------V-GQLTQLRSLDLRHCSNLQ  173 (259)
Q Consensus       149 -------~--------------------~lp~~---------------------------i-~~l~~L~~L~l~~~~~~~  173 (259)
                             .                    .++..                           + ..+++|+.+++++ +.+.
T Consensus       161 ~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~-n~i~  239 (329)
T 3sb4_A          161 YRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISK-TNAT  239 (329)
T ss_dssp             HHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTT-BCCC
T ss_pred             hhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCC-CCcc
Confidence                   0                    01110                           0 1278899999997 4577


Q ss_pred             eeCCC--CCCCCCcEEEeeccCCCccCCC-CcCCCCCC-eEEeecccccCC-cccccccccceeeccccchhhhhhhhhh
Q 039152          174 VIPLN--KHLPNLTSLELEVNDANTLPRG-GLFLEKPE-RIDLDANVRLKD-QDTVQLWGIEELSLAELLDHIKNFVNKL  248 (259)
Q Consensus       174 ~lp~~--~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~-~L~l~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l  248 (259)
                      .+|..  .++++|+.+++..| ++.++.. +.++++|+ .+.+......-. .....+++|+.+++..+  .+..++...
T Consensus       240 ~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~l~~n--~i~~I~~~a  316 (329)
T 3sb4_A          240 TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGD--KITTLGDEL  316 (329)
T ss_dssp             EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEEEECSS--CCCEECTTT
T ss_pred             eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEEEeCCC--ccCccchhh
Confidence            88876  88899999999987 8777765 45888999 999988533332 33334999999999877  788888765


Q ss_pred             hhcccccccCC
Q 039152          249 VKVGSSQLKYL  259 (259)
Q Consensus       249 ~~~~l~~L~~L  259 (259)
                       +.++++|+.+
T Consensus       317 -F~~~~~L~~l  326 (329)
T 3sb4_A          317 -FGNGVPSKLI  326 (329)
T ss_dssp             -TCTTCCCCEE
T ss_pred             -hcCCcchhhh
Confidence             7788888753

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.10  E-value=3.3e-10  Score=95.29  Aligned_cols=97  Identities=21%  Similarity=0.142  Sum_probs=43.6

Q ss_pred             EcCCC-CCCCCchhhcCCCCCcEEEecC-CCCCC-c-hhhhCCCCCcEEEecCCCCcccch-hhccCCcCCEEecCCCCC
Q 039152           97 DLTDM-NLLSLPSSIGLLTNLHTLCLYS-CILKD-M-AVISDLKKLEILCLHGSSIYQLPV-EVGQLTQLRSLDLRHCSN  171 (259)
Q Consensus        97 ~l~~~-~~~~lp~~i~~l~~L~~L~l~~-~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~  171 (259)
                      +.+++ .++.+|. ++.+.+|++|+|++ |.++. + ..++.+++|++|+|++|++..+|+ .+..+++|+.|++++ +.
T Consensus        14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~   91 (347)
T 2ifg_A           14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NA   91 (347)
T ss_dssp             ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SC
T ss_pred             EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-Cc
Confidence            44444 4444554 44455555555543 44444 2 334445555555555555544433 244455555555554 23


Q ss_pred             ceeeCCC-CCCCCCcEEEeeccCCC
Q 039152          172 LQVIPLN-KHLPNLTSLELEVNDAN  195 (259)
Q Consensus       172 ~~~lp~~-~~l~~L~~L~l~~~~~~  195 (259)
                      +..+|.. .....|+.|++.+|.+.
T Consensus        92 l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           92 LESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             CSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             cceeCHHHcccCCceEEEeeCCCcc
Confidence            3333332 11112555555555443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.09  E-value=4.6e-11  Score=107.44  Aligned_cols=127  Identities=16%  Similarity=0.135  Sum_probs=63.4

Q ss_pred             HhCCCCccEEEcCCCCCC-----CCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEe-----------------
Q 039152           87 LRSMLQVRVLDLTDMNLL-----SLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCL-----------------  143 (259)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l-----------------  143 (259)
                      +..+++|++|++++|.++     .++..+..+++|++|++++|.+.+ +..+..+++|++|++                 
T Consensus       188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  267 (592)
T 3ogk_B          188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV  267 (592)
T ss_dssp             HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred             HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence            345666666666666554     223334455666666666655544 334444444444444                 


Q ss_pred             ----------cCCCCcccchhhccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCC-CccCCCCcCCCCCCeE
Q 039152          144 ----------HGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDA-NTLPRGGLFLEKPERI  210 (259)
Q Consensus       144 ----------~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~-~~~p~~~~~l~~L~~L  210 (259)
                                +++....+|..+..+++|++|++++|.........  ..+++|+.|+++.+.. ..++.....+++|++|
T Consensus       268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L  347 (592)
T 3ogk_B          268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL  347 (592)
T ss_dssp             CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred             ccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence                      44333445555666777777777776521111100  4556666666652211 1222222345555555


Q ss_pred             Eee
Q 039152          211 DLD  213 (259)
Q Consensus       211 ~l~  213 (259)
                      ++.
T Consensus       348 ~L~  350 (592)
T 3ogk_B          348 RIE  350 (592)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            555

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.03  E-value=1.5e-11  Score=110.67  Aligned_cols=82  Identities=23%  Similarity=0.251  Sum_probs=37.9

Q ss_pred             hCCCCccEEEcCCCCCC-CCchhhc-CCCCCcEEEecCC-CCCC--ch-hhhCCCCCcEEEecCCCCcc-----cchhhc
Q 039152           88 RSMLQVRVLDLTDMNLL-SLPSSIG-LLTNLHTLCLYSC-ILKD--MA-VISDLKKLEILCLHGSSIYQ-----LPVEVG  156 (259)
Q Consensus        88 ~~l~~L~~L~l~~~~~~-~lp~~i~-~l~~L~~L~l~~~-~~~~--~~-~~~~l~~L~~L~l~~~~i~~-----lp~~i~  156 (259)
                      ..+++|+.|+++++.++ ..+..+. .+++|++|++++| .+..  .+ ....+++|++|++++|.+..     ++.-..
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            34555666666655554 2222332 3555555555555 2332  22 22245555555555554331     111122


Q ss_pred             cCCcCCEEecCCC
Q 039152          157 QLTQLRSLDLRHC  169 (259)
Q Consensus       157 ~l~~L~~L~l~~~  169 (259)
                      .+++|+.|++++|
T Consensus       182 ~~~~L~~L~l~~~  194 (594)
T 2p1m_B          182 TYTSLVSLNISCL  194 (594)
T ss_dssp             TCCCCCEEECTTC
T ss_pred             cCCcCcEEEeccc
Confidence            3445555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.02  E-value=6.9e-11  Score=106.30  Aligned_cols=55  Identities=16%  Similarity=0.099  Sum_probs=29.6

Q ss_pred             CCCCCcEEEeeccCCCc--cCCCCcCCCCCCeEEeecccccCCcccc-c-ccccceeec
Q 039152          180 HLPNLTSLELEVNDANT--LPRGGLFLEKPERIDLDANVRLKDQDTV-Q-LWGIEELSL  234 (259)
Q Consensus       180 ~l~~L~~L~l~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~~~~~~-~-l~~L~~L~l  234 (259)
                      .+++|++|++++|.++.  ++..+..+++|+.|++.+|........+ . +++|+.|++
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L  345 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRV  345 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEE
Confidence            45677777777776542  2222345677777777766221111111 1 566666666

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.00  E-value=1.8e-09  Score=90.71  Aligned_cols=99  Identities=18%  Similarity=0.240  Sum_probs=83.7

Q ss_pred             cEEEecCC-CCCC-chhhhCCCCCcEEEecC-CCCcccch-hhccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEee
Q 039152          117 HTLCLYSC-ILKD-MAVISDLKKLEILCLHG-SSIYQLPV-EVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELE  190 (259)
Q Consensus       117 ~~L~l~~~-~~~~-~~~~~~l~~L~~L~l~~-~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~  190 (259)
                      ..++.+++ .++. |. ++.+++|++|+|++ |.+..+|. .++.+++|+.|++++| .+..++..  .++++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCC
Confidence            35688887 8888 67 99999999999996 99998875 5999999999999996 56666654  789999999999


Q ss_pred             ccCCCccCCCCcCCCCCCeEEeecccc
Q 039152          191 VNDANTLPRGGLFLEKPERIDLDANVR  217 (259)
Q Consensus       191 ~~~~~~~p~~~~~l~~L~~L~l~~~~~  217 (259)
                      +|.++.+|..+.....|+.|++.+|..
T Consensus        89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~  115 (347)
T 2ifg_A           89 FNALESLSWKTVQGLSLQELVLSGNPL  115 (347)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCccceeCHHHcccCCceEEEeeCCCc
Confidence            999999998766555599999998843

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.95  E-value=1.8e-09  Score=90.18  Aligned_cols=152  Identities=12%  Similarity=0.023  Sum_probs=112.4

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCC-------C--------------------C---
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCIL-------K--------------------D---  128 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~-------~--------------------~---  128 (259)
                      ..|++..|.++++|+.+++..|.+..+++ .|.++.++.++....+..       .                    .   
T Consensus       113 ~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~  192 (329)
T 3sb4_A          113 KNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLED  192 (329)
T ss_dssp             CEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHH
T ss_pred             cchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHH
Confidence            57889999999999999999998876544 466666666665443110       0                    0   


Q ss_pred             -------------------------chhh-hCCCCCcEEEecCCCCcccchh-hccCCcCCEEecCCCCCceeeCCC--C
Q 039152          129 -------------------------MAVI-SDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLRHCSNLQVIPLN--K  179 (259)
Q Consensus       129 -------------------------~~~~-~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~--~  179 (259)
                                               ...+ ..+++|+++++++|+++.+|.. +..+.+|+.+++.++  +..++..  .
T Consensus       193 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~  270 (329)
T 3sb4_A          193 EIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFS  270 (329)
T ss_dssp             HHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT
T ss_pred             HHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhh
Confidence                                     0011 1278999999999999999876 889999999999984  7788876  8


Q ss_pred             CCCCCc-EEEeeccCCCccCC-CCcCCCCCCeEEeecccccCCc--ccccccccceeec
Q 039152          180 HLPNLT-SLELEVNDANTLPR-GGLFLEKPERIDLDANVRLKDQ--DTVQLWGIEELSL  234 (259)
Q Consensus       180 ~l~~L~-~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l  234 (259)
                      ++++|+ .+++.. .++.++. .+.++++|+.+++..+.....+  ....+++|+.++.
T Consensus       271 ~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          271 NCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            899999 999988 7777764 4558999999999766333332  3333888888763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.88  E-value=1e-10  Score=99.51  Aligned_cols=33  Identities=21%  Similarity=0.215  Sum_probs=14.5

Q ss_pred             CCCcEEEecCCCCc-----ccchhhccCCcCCEEecCC
Q 039152          136 KKLEILCLHGSSIY-----QLPVEVGQLTQLRSLDLRH  168 (259)
Q Consensus       136 ~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~  168 (259)
                      ++|++|++++|.+.     .++..+...++|++|++++
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~  192 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLH  192 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTT
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCC
Confidence            44444555444443     1233334444444444444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.83  E-value=2.3e-08  Score=85.89  Aligned_cols=63  Identities=14%  Similarity=0.265  Sum_probs=27.9

Q ss_pred             cccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEec
Q 039152           81 AIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLH  144 (259)
Q Consensus        81 ~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~  144 (259)
                      .|+...|.++++|+.+++..|.++.++.....+.+|+.+.+..+ ++.  ...+..+.+|+.+++.
T Consensus       170 ~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          170 QLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             EECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred             EehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence            33444455555555555555544444433222344444444422 222  2334444445544444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.81  E-value=5.6e-10  Score=94.98  Aligned_cols=153  Identities=16%  Similarity=0.098  Sum_probs=106.7

Q ss_pred             CCCccEEEcCCCCCCC-----Cchhhc-CCCCCcEEEecCCCCCC--chhh-hCCCCCcEEEecCCCCccc-----chhh
Q 039152           90 MLQVRVLDLTDMNLLS-----LPSSIG-LLTNLHTLCLYSCILKD--MAVI-SDLKKLEILCLHGSSIYQL-----PVEV  155 (259)
Q Consensus        90 l~~L~~L~l~~~~~~~-----lp~~i~-~l~~L~~L~l~~~~~~~--~~~~-~~l~~L~~L~l~~~~i~~l-----p~~i  155 (259)
                      ++.|+.|++++|.++.     +...+. ...+|++|++++|.+..  ...+ ..+.+|++|++++|.+...     ...+
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            5678999999999873     222222 23689999999999876  3333 3467899999999998732     2222


Q ss_pred             -ccCCcCCEEecCCCCCce----eeCCC-CCCCCCcEEEeeccCCCc-----cCCCCcCCCCCCeEEeecccccCCc-cc
Q 039152          156 -GQLTQLRSLDLRHCSNLQ----VIPLN-KHLPNLTSLELEVNDANT-----LPRGGLFLEKPERIDLDANVRLKDQ-DT  223 (259)
Q Consensus       156 -~~l~~L~~L~l~~~~~~~----~lp~~-~~l~~L~~L~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~~~-~~  223 (259)
                       ...++|++|++++|....    .++.. ...++|++|++++|.++.     ++..+...++|+.|++++|...... ..
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             246789999999975322    11111 467889999999999862     4555667789999999998544321 11


Q ss_pred             c-----cccccceeeccccchhhhhh
Q 039152          224 V-----QLWGIEELSLAELLDHIKNF  244 (259)
Q Consensus       224 ~-----~l~~L~~L~l~~~~~~~~~~  244 (259)
                      +     ..++|+.|++++|  .+...
T Consensus       231 l~~~L~~~~~L~~L~Ls~N--~i~~~  254 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFN--ELSSE  254 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTS--SCCHH
T ss_pred             HHHHHHhCCCCCEEeccCC--CCCHH
Confidence            1     1689999999999  44443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.74  E-value=8.8e-08  Score=82.21  Aligned_cols=140  Identities=12%  Similarity=0.102  Sum_probs=72.3

Q ss_pred             hcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchh-hccCCcCCEEecCCCCCceeeCCC--CCCCCCc
Q 039152          110 IGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLT  185 (259)
Q Consensus       110 i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~  185 (259)
                      |.+|.+|+.+++..|.++. +.......+|+.+.+.. .++.++.. +..+++|+.+.+..  .+..++..  .+ .+|+
T Consensus       176 F~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~  251 (401)
T 4fdw_A          176 FYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGIT  251 (401)
T ss_dssp             TTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCS
T ss_pred             hhCcccCCeeecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCcc
Confidence            4444555555555444444 22222234455555542 24444332 44555555555554  13444443  22 5666


Q ss_pred             EEEeeccCCCccCCC-CcCCCCCCeEEeeccccc-------CCcccccccccceeeccccchhhhhhhhhhhhccccccc
Q 039152          186 SLELEVNDANTLPRG-GLFLEKPERIDLDANVRL-------KDQDTVQLWGIEELSLAELLDHIKNFVNKLVKVGSSQLK  257 (259)
Q Consensus       186 ~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~-------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~  257 (259)
                      .+.+ .+.++.++.. +.++++|+.+.+.++...       .......+++|+.+++.+.   +..++... +.++++|+
T Consensus       252 ~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~---i~~I~~~a-F~~c~~L~  326 (401)
T 4fdw_A          252 TVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES---IRILGQGL-LGGNRKVT  326 (401)
T ss_dssp             EEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT---CCEECTTT-TTTCCSCC
T ss_pred             EEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc---eEEEhhhh-hcCCCCcc
Confidence            6666 3345555443 447788888888776432       1122222778888888643   66666554 56666665


Q ss_pred             C
Q 039152          258 Y  258 (259)
Q Consensus       258 ~  258 (259)
                      .
T Consensus       327 ~  327 (401)
T 4fdw_A          327 Q  327 (401)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.63  E-value=2.6e-08  Score=84.22  Aligned_cols=149  Identities=15%  Similarity=0.149  Sum_probs=93.4

Q ss_pred             hCCCCccEEEcCCCCCC----------CCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCc-ccchhhc
Q 039152           88 RSMLQVRVLDLTDMNLL----------SLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIY-QLPVEVG  156 (259)
Q Consensus        88 ~~l~~L~~L~l~~~~~~----------~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~lp~~i~  156 (259)
                      ..+++|+.|.+......          .++..+..+++|+.|++++|.-...+.+ .+++|++|++..+.+. .....+.
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~  214 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDIL  214 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred             hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHH
Confidence            35678888888654321          2445567788999999988742222223 3788999999888775 2222333


Q ss_pred             --cCCcCCEEecCCC--CC-----cee---eCCCCCCCCCcEEEeeccCCCc-cCCCC---cCCCCCCeEEeecccccCC
Q 039152          157 --QLTQLRSLDLRHC--SN-----LQV---IPLNKHLPNLTSLELEVNDANT-LPRGG---LFLEKPERIDLDANVRLKD  220 (259)
Q Consensus       157 --~l~~L~~L~l~~~--~~-----~~~---lp~~~~l~~L~~L~l~~~~~~~-~p~~~---~~l~~L~~L~l~~~~~~~~  220 (259)
                        .+++|++|++..+  ..     ...   ......+++|++|++.+|.++. .+..+   ..+++|++|+++.|.....
T Consensus       215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~  294 (362)
T 2ra8_A          215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE  294 (362)
T ss_dssp             HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred             HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence              6889999987531  11     111   1111467899999999888752 11111   3578899999987743321


Q ss_pred             -c----ccc-cccccceeecccc
Q 039152          221 -Q----DTV-QLWGIEELSLAEL  237 (259)
Q Consensus       221 -~----~~~-~l~~L~~L~l~~~  237 (259)
                       .    ..+ .+++|+.|++++|
T Consensus       295 G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          295 GARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             HHHHHHTTHHHHTTCSEEECCSB
T ss_pred             HHHHHHhhcccCCcceEEECCCC
Confidence             1    111 2788999999888

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.55  E-value=3.7e-08  Score=75.37  Aligned_cols=82  Identities=13%  Similarity=0.150  Sum_probs=59.2

Q ss_pred             HHHhCCCCccEEEcCCC-CCCC-----CchhhcCCCCCcEEEecCCCCCC------chhhhCCCCCcEEEecCCCCcc--
Q 039152           85 NLLRSMLQVRVLDLTDM-NLLS-----LPSSIGLLTNLHTLCLYSCILKD------MAVISDLKKLEILCLHGSSIYQ--  150 (259)
Q Consensus        85 ~~~~~l~~L~~L~l~~~-~~~~-----lp~~i~~l~~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~~~i~~--  150 (259)
                      .++...+.|++|++++| .+..     +...+...++|++|++++|.+.+      ...+...++|++|++++|.+..  
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            34567888999999988 7762     45556677888999999888876      2445566788888888888762  


Q ss_pred             ---cchhhccCCcCCEEec
Q 039152          151 ---LPVEVGQLTQLRSLDL  166 (259)
Q Consensus       151 ---lp~~i~~l~~L~~L~l  166 (259)
                         +...+...+.|++|++
T Consensus       110 ~~~l~~~L~~n~~L~~L~L  128 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRI  128 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEEC
T ss_pred             HHHHHHHHHhCCCceEEEe
Confidence               4455566666677766

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.49  E-value=6.3e-08  Score=81.92  Aligned_cols=130  Identities=22%  Similarity=0.218  Sum_probs=85.4

Q ss_pred             HHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC--chhhh--CCCCCcEEEecCC--C------Ccccc
Q 039152           85 NLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD--MAVIS--DLKKLEILCLHGS--S------IYQLP  152 (259)
Q Consensus        85 ~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~--~l~~L~~L~l~~~--~------i~~lp  152 (259)
                      .++..+++|+.|.+.++.-..++. +. +++|+.|.+..|.+..  ...+.  .+++|++|+|+.+  .      +..+.
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~  243 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR  243 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred             HHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence            455778888888888773223444 33 7788888888887765  34444  6888888888531  1      22222


Q ss_pred             hhh--ccCCcCCEEecCCCCCceeeCC----CCCCCCCcEEEeeccCCCc-----cCCCCcCCCCCCeEEeeccc
Q 039152          153 VEV--GQLTQLRSLDLRHCSNLQVIPL----NKHLPNLTSLELEVNDANT-----LPRGGLFLEKPERIDLDANV  216 (259)
Q Consensus       153 ~~i--~~l~~L~~L~l~~~~~~~~lp~----~~~l~~L~~L~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~  216 (259)
                      ..+  ..+++|++|++.+|......+.    ...+++|++|+++.|.++.     ++..+..+++|+.|+++.|.
T Consensus       244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            222  2478888888887654322111    1457788888888888763     55555677888888888774

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.33  E-value=1.1e-06  Score=70.93  Aligned_cols=76  Identities=22%  Similarity=0.299  Sum_probs=40.7

Q ss_pred             CCCCCcEEEecCCCCCCc----hhhhCCCCCcEEEecCCCCcccchhhccCC--cCCEEecCCCCCceeeCCC-------
Q 039152          112 LLTNLHTLCLYSCILKDM----AVISDLKKLEILCLHGSSIYQLPVEVGQLT--QLRSLDLRHCSNLQVIPLN-------  178 (259)
Q Consensus       112 ~l~~L~~L~l~~~~~~~~----~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~--~L~~L~l~~~~~~~~lp~~-------  178 (259)
                      ++++|+.|+|++|.++..    ..++.+++|++|+|++|.+..+ ..+..+.  +|+.|++.+|.....+|..       
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            455666666666666551    2344566666666666666544 2233333  5666666665544444321       


Q ss_pred             -CCCCCCcEEE
Q 039152          179 -KHLPNLTSLE  188 (259)
Q Consensus       179 -~~l~~L~~L~  188 (259)
                       ..+++|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence             4556666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.26  E-value=2e-07  Score=71.22  Aligned_cols=63  Identities=11%  Similarity=0.068  Sum_probs=42.8

Q ss_pred             chhhcCCCCCcEEEecCC-CCCC------chhhhCCCCCcEEEecCCCCc-----ccchhhccCCcCCEEecCCC
Q 039152          107 PSSIGLLTNLHTLCLYSC-ILKD------MAVISDLKKLEILCLHGSSIY-----QLPVEVGQLTQLRSLDLRHC  169 (259)
Q Consensus       107 p~~i~~l~~L~~L~l~~~-~~~~------~~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~~  169 (259)
                      ...+...+.|++|++++| .+..      ...+...++|++|++++|.+.     .+...+...+.|++|++++|
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N  103 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN  103 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence            334566788888898888 7765      245566778888888888776     23444555566666666664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.24  E-value=1.2e-06  Score=66.04  Aligned_cols=84  Identities=17%  Similarity=0.259  Sum_probs=61.1

Q ss_pred             CCccEEEcCCCCCCC-CchhhcCCCCCcEEEecCCC-CCC--chhhhCC----CCCcEEEecCCC-Ccc-cchhhccCCc
Q 039152           91 LQVRVLDLTDMNLLS-LPSSIGLLTNLHTLCLYSCI-LKD--MAVISDL----KKLEILCLHGSS-IYQ-LPVEVGQLTQ  160 (259)
Q Consensus        91 ~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~~~-~~~--~~~~~~l----~~L~~L~l~~~~-i~~-lp~~i~~l~~  160 (259)
                      ..|+.|+++++.++. --..+..+++|+.|++++|. +++  ...++.+    ++|++|++++|. ++. --..+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            468999999988773 23346788899999999986 666  5667764    478999998874 662 1234667888


Q ss_pred             CCEEecCCCCCcee
Q 039152          161 LRSLDLRHCSNLQV  174 (259)
Q Consensus       161 L~~L~l~~~~~~~~  174 (259)
                      |++|++++|..++.
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            88888888866553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.17  E-value=1.1e-06  Score=66.19  Aligned_cols=59  Identities=14%  Similarity=0.241  Sum_probs=39.9

Q ss_pred             CCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCC-Ccc-cchhhccC----CcCCEEecCCCCCc
Q 039152          114 TNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSS-IYQ-LPVEVGQL----TQLRSLDLRHCSNL  172 (259)
Q Consensus       114 ~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~-i~~-lp~~i~~l----~~L~~L~l~~~~~~  172 (259)
                      .+|+.|++++|.+++  ...+..+++|++|+|++|. ++. --..+..+    ++|++|++++|..+
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I  127 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV  127 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence            468899999998877  5777888888888888884 551 11224333    35666666666543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.11  E-value=2.4e-06  Score=68.93  Aligned_cols=79  Identities=23%  Similarity=0.205  Sum_probs=51.9

Q ss_pred             hCCCCCcEEEecCCCCccc---chhhccCCcCCEEecCCCCCceeeCCCCCCC--CCcEEEeeccCCC-ccCC-------
Q 039152          133 SDLKKLEILCLHGSSIYQL---PVEVGQLTQLRSLDLRHCSNLQVIPLNKHLP--NLTSLELEVNDAN-TLPR-------  199 (259)
Q Consensus       133 ~~l~~L~~L~l~~~~i~~l---p~~i~~l~~L~~L~l~~~~~~~~lp~~~~l~--~L~~L~l~~~~~~-~~p~-------  199 (259)
                      ..+++|++|+|++|++..+   |..+..+++|+.|++++| .+..+.....+.  +|+.|++++|.+. .+|.       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            3577888888888877754   355667888888888874 344433222333  7888888888874 4442       


Q ss_pred             CCcCCCCCCeEEe
Q 039152          200 GGLFLEKPERIDL  212 (259)
Q Consensus       200 ~~~~l~~L~~L~l  212 (259)
                      .+..+++|+.|+-
T Consensus       246 il~~~P~L~~LDg  258 (267)
T 3rw6_A          246 IRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHCTTCCEESS
T ss_pred             HHHHCcccCeECC
Confidence            2456777777753

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=97.69  E-value=6.6e-06  Score=73.42  Aligned_cols=53  Identities=6%  Similarity=-0.063  Sum_probs=35.2

Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHhcCccccC----CCcEEccHHHHHHHHHHhhccc
Q 039152            2 GLFQGIKNIKEARARVHTLVNKLKAFCMLLDD----DENIFMHDVACDVAISITSREQ   55 (259)
Q Consensus         2 G~i~~~~~~e~~~~~~~~~i~~L~~~~l~~~~----~~~~~mHdli~dl~~~~~~~e~   55 (259)
                      ||+.+.......++.++ ++++|+++|||+..    ..+|+|||+|||+|++++.+++
T Consensus       416 G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~  472 (549)
T 2a5y_B          416 VDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT  472 (549)
T ss_dssp             C-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred             ceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence            77765321112344444 78889999999976    2379999999999999988665

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.41  E-value=0.00061  Score=57.93  Aligned_cols=74  Identities=9%  Similarity=0.113  Sum_probs=37.7

Q ss_pred             CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeecccccCC-cccccccccceeeccccchhhhhhhhhhhhcccccc
Q 039152          179 KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDANVRLKD-QDTVQLWGIEELSLAELLDHIKNFVNKLVKVGSSQL  256 (259)
Q Consensus       179 ~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L  256 (259)
                      ..+++|+.+++..+ ++.++.. +.++.+|+.+.+..+...-. .....+.+|+.+++...   +..+..  ++.++++|
T Consensus       317 ~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~~---~~~~~~--~F~~c~~L  390 (394)
T 4fs7_A          317 ESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELPKR---LEQYRY--DFEDTTKF  390 (394)
T ss_dssp             TTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEGG---GGGGGG--GBCTTCEE
T ss_pred             cCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEECCC---CEEhhh--eecCCCCC
Confidence            45566666666432 4444433 33566777776655522222 22222677777777544   333322  24456665


Q ss_pred             cC
Q 039152          257 KY  258 (259)
Q Consensus       257 ~~  258 (259)
                      +.
T Consensus       391 ~~  392 (394)
T 4fs7_A          391 KW  392 (394)
T ss_dssp             EE
T ss_pred             cE
Confidence            53

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.38  E-value=0.0019  Score=54.86  Aligned_cols=142  Identities=13%  Similarity=0.054  Sum_probs=87.2

Q ss_pred             HHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchh-hccCCcCCE
Q 039152           85 NLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRS  163 (259)
Q Consensus        85 ~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~  163 (259)
                      ..|.++..++.+.+..+...--...+..+..++......+.+. ...+..+.+|+.+.+..+ ++.+++. +..+.+|+.
T Consensus       247 ~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~-~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~  324 (394)
T 4fs7_A          247 SVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP-EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVS  324 (394)
T ss_dssp             STTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC-TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred             ccccccccceeEEcCCCcceeeccccccccccceeccCceeec-cccccccccccccccccc-cceechhhhcCCCCCCE
Confidence            3344444555555544322212223444555555554433221 234567788888888654 6666554 778899999


Q ss_pred             EecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeecccccCCcccccccccce
Q 039152          164 LDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDANVRLKDQDTVQLWGIEE  231 (259)
Q Consensus       164 L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~  231 (259)
                      +++..  .+..++..  .++++|+.+.+..+ ++.++.. +.++.+|+.+.+..+...-......+.+|+.
T Consensus       325 i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~~~~~~~F~~c~~L~~  392 (394)
T 4fs7_A          325 IDLPY--LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRLEQYRYDFEDTTKFKW  392 (394)
T ss_dssp             ECCCT--TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGGGGGGGGBCTTCEEEE
T ss_pred             EEeCC--cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCCEEhhheecCCCCCcE
Confidence            99975  36677665  78899999999766 7666554 4588999999998764333222222566654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.24  E-value=0.0047  Score=52.02  Aligned_cols=120  Identities=14%  Similarity=0.169  Sum_probs=69.5

Q ss_pred             CCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-hccCCcCCEEecCCCCCceeeCCC--CCCCCCcE
Q 039152          112 LLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTS  186 (259)
Q Consensus       112 ~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~  186 (259)
                      .+..|+.+.+..+ +..  ...+..+..|+.+.+..+ ++.+... +..+.+|+.+.+..  .+..++..  ..+++|+.
T Consensus       215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~  290 (379)
T 4h09_A          215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTK  290 (379)
T ss_dssp             TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCE
T ss_pred             cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc--cceecccccccccccccc
Confidence            3444555554332 222  244556667777776554 4444433 55667777777754  24455554  67778888


Q ss_pred             EEeeccCCCccCCC-CcCCCCCCeEEeecccccCC-cccccccccceeecc
Q 039152          187 LELEVNDANTLPRG-GLFLEKPERIDLDANVRLKD-QDTVQLWGIEELSLA  235 (259)
Q Consensus       187 L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~  235 (259)
                      +.+..+.++.++.. +.++.+|+.+.+..+...-. .....+.+|+.+.+-
T Consensus       291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTALKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             EEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCCCCCC
T ss_pred             ccccccccceehhhhhcCCCCCCEEEcCccccEEHHHHhhCCCCCCEEEEC
Confidence            88877777766554 34777888888765532222 222236777777664

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.05  E-value=0.0081  Score=50.93  Aligned_cols=79  Identities=11%  Similarity=0.133  Sum_probs=41.0

Q ss_pred             ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeecccccCCcc-cccccccce
Q 039152          156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDANVRLKDQD-TVQLWGIEE  231 (259)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~  231 (259)
                      .++..|+.+.+..  .+..++..  .++.+|+.+.+..+ ++.+... +.++.+|+.+.+-.+...-+.. ...+.+|+.
T Consensus       285 ~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~  361 (394)
T 4gt6_A          285 MNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSSVTKIPESAFSNCTALNN  361 (394)
T ss_dssp             TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTTCCBCCGGGGTTCTTCCE
T ss_pred             ccccccccccCCC--cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcccCEEhHhHhhCCCCCCE
Confidence            3444444444432  23344443  55666777666543 4444433 3466777777775543322222 222777777


Q ss_pred             eecccc
Q 039152          232 LSLAEL  237 (259)
Q Consensus       232 L~l~~~  237 (259)
                      +++.++
T Consensus       362 i~~~~~  367 (394)
T 4gt6_A          362 IEYSGS  367 (394)
T ss_dssp             EEESSC
T ss_pred             EEECCc
Confidence            777665

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.97  E-value=0.0016  Score=55.32  Aligned_cols=123  Identities=13%  Similarity=0.155  Sum_probs=76.4

Q ss_pred             hhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchh-hccCCcCCEEecCCCCCceeeCCC--CCCCCC
Q 039152          109 SIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLRHCSNLQVIPLN--KHLPNL  184 (259)
Q Consensus       109 ~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L  184 (259)
                      .+.++..|+.+.+..+...- ...+..+.+|+.+.+. +.+..++.. +..+.+|+.+.+..  .+..+...  .++.+|
T Consensus       260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTC
T ss_pred             eeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCC
Confidence            45667778877776543322 4566777888888875 456666655 67788888888875  25566555  778888


Q ss_pred             cEEEeeccCCCccCCC-CcCCCCCCeEEeecccccCCcccccccccceeeccc
Q 039152          185 TSLELEVNDANTLPRG-GLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAE  236 (259)
Q Consensus       185 ~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~  236 (259)
                      +.+.+..+ ++.+... +.++++|+.+.+.++.... .......+|+.+.+..
T Consensus       337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~-~~~~~~~~L~~i~i~~  387 (394)
T 4gt6_A          337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW-NAISTDSGLQNLPVAP  387 (394)
T ss_dssp             CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH-HTCBCCCCC-------
T ss_pred             CEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh-hhhhccCCCCEEEeCC
Confidence            88888543 6666544 4478889988888763221 2233366677666643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.81  E-value=0.012  Score=49.54  Aligned_cols=129  Identities=10%  Similarity=0.099  Sum_probs=86.5

Q ss_pred             ccHHHHhCCCCccEEEcCCCCCCCC-chhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-hcc
Q 039152           82 IPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE-VGQ  157 (259)
Q Consensus        82 l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~  157 (259)
                      +....|...+.++.+.+..+ +..+ ...+..+..|+.+.+..+ ++.  ...+..+.+|+.+.+.. .+..++.. +..
T Consensus       208 i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~  284 (379)
T 4h09_A          208 VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSG  284 (379)
T ss_dssp             ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTT
T ss_pred             Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccc
Confidence            33444556677777777654 3333 234667788888888665 444  35667788888888854 35566554 677


Q ss_pred             CCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeecc
Q 039152          158 LTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDAN  215 (259)
Q Consensus       158 l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~  215 (259)
                      +.+|+.+.+.. ..+..++..  .++.+|+.+.+..+ ++.+... +.++.+|+.+.+-.+
T Consensus       285 c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          285 CSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             CTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             ccccccccccc-cccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            88888888876 456666665  67788888888643 6666554 447888888887654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.67  E-value=0.0035  Score=47.89  Aligned_cols=83  Identities=11%  Similarity=0.167  Sum_probs=54.8

Q ss_pred             HHhCCCCccEEEcCCC-CCCC-----CchhhcCCCCCcEEEecCCCCCC------chhhhCCCCCcEEEecCCCCc----
Q 039152           86 LLRSMLQVRVLDLTDM-NLLS-----LPSSIGLLTNLHTLCLYSCILKD------MAVISDLKKLEILCLHGSSIY----  149 (259)
Q Consensus        86 ~~~~l~~L~~L~l~~~-~~~~-----lp~~i~~l~~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~~~i~----  149 (259)
                      +..+-+.|+.|+++++ .+..     +-..+..-..|+.|+|++|.+.+      ...+..-+.|++|+|++|.|.    
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            4456678888888875 6652     44455666778888888888775      144556677888888888776    


Q ss_pred             -ccchhhccCCcCCEEecCC
Q 039152          150 -QLPVEVGQLTQLRSLDLRH  168 (259)
Q Consensus       150 -~lp~~i~~l~~L~~L~l~~  168 (259)
                       .+.+.+..-+.|+.|++++
T Consensus       116 ~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCC
T ss_pred             HHHHHHHhhCCceeEEECCC
Confidence             3333444444566666654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.52  E-value=0.0059  Score=43.34  Aligned_cols=53  Identities=21%  Similarity=0.233  Sum_probs=33.4

Q ss_pred             EEEcCCCCCC--CCchhhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCc
Q 039152           95 VLDLTDMNLL--SLPSSIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIY  149 (259)
Q Consensus        95 ~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~  149 (259)
                      +++-+++.++  .+|..+.  .+|++|+|++|.++. + ..+..+++|++|+|.+|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5666666666  6665432  356777777777766 3 44566667777777776554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.01  E-value=0.012  Score=41.66  Aligned_cols=50  Identities=20%  Similarity=0.169  Sum_probs=26.6

Q ss_pred             EEEecCCCCC--C-chhhhCCCCCcEEEecCCCCcccchh-hccCCcCCEEecCCC
Q 039152          118 TLCLYSCILK--D-MAVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLRHC  169 (259)
Q Consensus       118 ~L~l~~~~~~--~-~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~  169 (259)
                      .++.+++.++  . |..+.  .+|++|+|++|+|+.+|.+ +..+++|+.|++.+|
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            4555555555  3 32221  3466666666666666554 445555555555553

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=95.27  E-value=0.017  Score=56.11  Aligned_cols=41  Identities=12%  Similarity=0.303  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHhcCccccC-CC---cEEccHHHHHHHHHHhhcc
Q 039152           14 RARVHTLVNKLKAFCMLLDD-DE---NIFMHDVACDVAISITSRE   54 (259)
Q Consensus        14 ~~~~~~~i~~L~~~~l~~~~-~~---~~~mHdli~dl~~~~~~~e   54 (259)
                      ++.+.+++++|+++||++.. ++   +|+|||++|++|++.+.+|
T Consensus       408 ~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          408 TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence            45567788899999999976 33   4999999999999998765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.24  E-value=0.034  Score=42.34  Aligned_cols=82  Identities=10%  Similarity=0.080  Sum_probs=61.3

Q ss_pred             HhCCCCccEEEcCCCCCC-----CCchhhcCCCCCcEEEecCCCCCC--c----hhhhCCCCCcEEEecCCC---Cc---
Q 039152           87 LRSMLQVRVLDLTDMNLL-----SLPSSIGLLTNLHTLCLYSCILKD--M----AVISDLKKLEILCLHGSS---IY---  149 (259)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~~~~--~----~~~~~l~~L~~L~l~~~~---i~---  149 (259)
                      +..-+.|+.|+|++|.+.     .+-..+..-+.|+.|+|++|.+..  .    ..+..-+.|++|+++++.   +.   
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g  145 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  145 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence            356779999999999987     345556677889999999999987  2    455566789999998653   33   


Q ss_pred             --ccchhhccCCcCCEEecCC
Q 039152          150 --QLPVEVGQLTQLRSLDLRH  168 (259)
Q Consensus       150 --~lp~~i~~l~~L~~L~l~~  168 (259)
                        .+.+.+..-+.|+.|+++.
T Consensus       146 ~~~ia~aL~~N~tL~~L~l~~  166 (197)
T 1pgv_A          146 EMDMMMAIEENESLLRVGISF  166 (197)
T ss_dssp             HHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHHHHhCCCcCeEeccC
Confidence              2444556667788888765

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=91.32  E-value=0.16  Score=45.29  Aligned_cols=37  Identities=16%  Similarity=0.340  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHhcCccccC-C---CcEEccHHHHHHHHHHhh
Q 039152           16 RVHTLVNKLKAFCMLLDD-D---ENIFMHDVACDVAISITS   52 (259)
Q Consensus        16 ~~~~~i~~L~~~~l~~~~-~---~~~~mHdli~dl~~~~~~   52 (259)
                      .+.+++++|+++|||+.. +   .+|+|||++|++++....
T Consensus       410 ~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~  450 (591)
T 1z6t_A          410 EVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC  450 (591)
T ss_dssp             HHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred             HHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence            467788899999999865 2   279999999999998743

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=87.69  E-value=0.3  Score=46.74  Aligned_cols=32  Identities=19%  Similarity=0.382  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHhcCccccC--CCcEEccHHHHHHH
Q 039152           16 RVHTLVNKLKAFCMLLDD--DENIFMHDVACDVA   47 (259)
Q Consensus        16 ~~~~~i~~L~~~~l~~~~--~~~~~mHdli~dl~   47 (259)
                      .+.+++++|+++|||+..  .++|+|||+++|++
T Consensus       403 dAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr  436 (1221)
T 1vt4_I          403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK  436 (1221)
T ss_dssp             HHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred             HHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence            466789999999999986  45899999999966

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	259
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.1 bits (108), Expect = 1e-06
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 113 LTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNL 172
           L NL  L LY   + D++ +S L KL+ L    + +  +   +  LT +  L   H    
Sbjct: 306 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQIS 364

Query: 173 QVIPLNKHLPNLTSLELEVN 192
            + PL  +L  +T L L   
Sbjct: 365 DLTPL-ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 3e-06
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 90  MLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIY 149
           +  +  L L   N +S  S +  LT L  L   +  + D++ +++L  +  L    + I 
Sbjct: 306 LKNLTYLTLYF-NNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQIS 364

Query: 150 QLPVEVGQLTQLRSLDLRH 168
            L   +  LT++  L L  
Sbjct: 365 DLT-PLANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.7 bits (81), Expect = 0.004
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 2/75 (2%)

Query: 113 LTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNL 172
           L       L    + D    +DL ++  L      I  +   V  L  L  ++  +   L
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNN-QL 78

Query: 173 QVIPLNKHLPNLTSL 187
             I   K+L  L  +
Sbjct: 79  TDITPLKNLTKLVDI 93

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 3e-04
 Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 68  WEWSDEGRKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILK 127
               +    N+     ++L      +  L++++  L+ LP+       L  L      L 
Sbjct: 261 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLA 317

Query: 128 DMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLR 162
           +  V    + L+ L +  + + + P     +  LR
Sbjct: 318 E--VPELPQNLKQLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 6/82 (7%)

Query: 117 HTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIP 176
           +   L +   +  ++      LE L +  + + +LP       +L  L      +L  +P
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP---ALPPRLERLIASFN-HLAEVP 320

Query: 177 LNKHLPNLTSLELEVNDANTLP 198
             +   NL  L +E N     P
Sbjct: 321 --ELPQNLKQLHVEYNPLREFP 340

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.9 bits (89), Expect = 3e-04
 Identities = 23/145 (15%), Positives = 44/145 (30%), Gaps = 6/145 (4%)

Query: 75  RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKDMAVIS 133
           + N    I     +++  +  L L +  +  + P +   L  L  L L    LK++    
Sbjct: 39  QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM 98

Query: 134 DLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLE---LE 190
                E+                 L Q+  ++L           N     +  L    + 
Sbjct: 99  PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 158

Query: 191 VNDANTLPRGGLFLEKPERIDLDAN 215
             +  T+P+G         + LD N
Sbjct: 159 DTNITTIPQG--LPPSLTELHLDGN 181

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 11/42 (26%), Positives = 16/42 (38%)

Query: 151 LPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVN 192
           LP  + QL  L SL++   +    IP   +L          N
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.3 bits (78), Expect = 0.004
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 5/102 (4%)

Query: 94  RVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLP 152
           RVL L     L++   +  L  +  L L    L+     ++ L+ LE+L    +++  + 
Sbjct: 1   RVLHLAH-KDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 153 VEVGQLTQLRSLDLRHC--SNLQVIPLNKHLPNLTSLELEVN 192
             V  L +L+ L L +        I      P L  L L+ N
Sbjct: 60  -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	259
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.77
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.77
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.72
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.64
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.63
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.63
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.62
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.61
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.6
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.59
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.58
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.56
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.56
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.51
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.47
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.44
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.42
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.4
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.36
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.33
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.28
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.26
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.11
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.11
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.1
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.74
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.37
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.18
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.15
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.13
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.13
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.77
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.42
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.17
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.37

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=9.2e-19  Score=140.81  Aligned_cols=156  Identities=23%  Similarity=0.215  Sum_probs=97.0

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchh-hcc
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVE-VGQ  157 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~  157 (259)
                      ..+|++.|.++++|++|++++|.++.+|. ++.+++|++|++++|.++. +..+..+++|++|+++++.+..++.. +..
T Consensus        44 ~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  122 (266)
T d1p9ag_          44 YTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG  122 (266)
T ss_dssp             SEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT
T ss_pred             CCcCHHHhhcccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccceeecccccc
Confidence            34555556666666666666666665554 4556666666666666666 55566666666666666666654433 556


Q ss_pred             CCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeecccccCCccccc-ccccceee
Q 039152          158 LTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDANVRLKDQDTVQ-LWGIEELS  233 (259)
Q Consensus       158 l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~~~~-l~~L~~L~  233 (259)
                      +.+++.|++.+| .+..+|..  ..+++++.+++++|.++.+|.. +..+++|++|++++|.....+..+. +++|+.|+
T Consensus       123 l~~l~~L~l~~n-~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~  201 (266)
T d1p9ag_         123 LGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF  201 (266)
T ss_dssp             CTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEE
T ss_pred             cccccccccccc-ccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEE
Confidence            666666666663 34444443  5566777777777777666543 4567777777777774444444333 77777777


Q ss_pred             cccc
Q 039152          234 LAEL  237 (259)
Q Consensus       234 l~~~  237 (259)
                      |+++
T Consensus       202 L~~N  205 (266)
T d1p9ag_         202 LHGN  205 (266)
T ss_dssp             CCSC
T ss_pred             ecCC
Confidence            7654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=2.6e-18  Score=132.23  Aligned_cols=162  Identities=21%  Similarity=0.256  Sum_probs=135.8

Q ss_pred             CCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCC
Q 039152           89 SMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRH  168 (259)
Q Consensus        89 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~  168 (259)
                      .+++++.|+++++.+..++. +..+++|++|++++|.+++.+.++.+++|++|++++|.+..++ .+..++.|+.|++++
T Consensus        38 ~l~~l~~L~l~~~~i~~l~~-l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~  115 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFN  115 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECCS
T ss_pred             HhcCCCEEECCCCCCCCccc-cccCCCcCcCccccccccCcccccCCccccccccccccccccc-ccccccccccccccc
Confidence            56789999999999998764 8899999999999999999556999999999999999998886 488999999999998


Q ss_pred             CCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeeccccchhhhhhhhhh
Q 039152          169 CSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFVNKL  248 (259)
Q Consensus       169 ~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l  248 (259)
                      |... ..+....+++|+.|++++|.+..+|. +..+++|+.|++.+|.....+....+++|+.|++++|  .+.+++.  
T Consensus       116 ~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N--~i~~i~~--  189 (199)
T d2omxa2         116 NQIT-DIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSN--KVSDISV--  189 (199)
T ss_dssp             SCCC-CCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSS--CCCCCGG--
T ss_pred             cccc-cccccchhhhhHHhhhhhhhhccccc-ccccccccccccccccccCCccccCCCCCCEEECCCC--CCCCCcc--
Confidence            6544 34434789999999999999987764 5789999999999985555444445999999999999  6777764  


Q ss_pred             hhcccccccCC
Q 039152          249 VKVGSSQLKYL  259 (259)
Q Consensus       249 ~~~~l~~L~~L  259 (259)
                       ..++++|+.|
T Consensus       190 -l~~L~~L~~L  199 (199)
T d2omxa2         190 -LAKLTNLESL  199 (199)
T ss_dssp             -GGGCTTCSEE
T ss_pred             -ccCCCCCCcC
Confidence             4578888865

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=7.8e-18  Score=130.61  Aligned_cols=162  Identities=25%  Similarity=0.301  Sum_probs=114.7

Q ss_pred             CCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCC
Q 039152           89 SMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRH  168 (259)
Q Consensus        89 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~  168 (259)
                      .+..|+.|+++++.++.++. +..+++|++|++++|.+++.+.++.+++|++|++++|+++.+| .+..+++|+.|++.+
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~-l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEH  121 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTT
T ss_pred             HhcCccEEECcCCCCCCchh-HhhCCCCCEEeCCCccccCccccccCccccccccccccccccc-ccccccccccccccc
Confidence            34567788888888777654 7778888888888888877555677888888888888887776 477788888888877


Q ss_pred             CCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeeccccchhhhhhhhhh
Q 039152          169 CSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFVNKL  248 (259)
Q Consensus       169 ~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l  248 (259)
                      |. ...++....+++++.+++++|.++..+ .+..+++|+.+++.+|.....+....+++|+.|++++|  .+..++.  
T Consensus       122 ~~-~~~~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N--~i~~l~~--  195 (210)
T d1h6ta2         122 NG-ISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN--HISDLRA--  195 (210)
T ss_dssp             SC-CCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSS--CCCBCGG--
T ss_pred             cc-ccccccccccccccccccccccccccc-cccccccccccccccccccccccccCCCCCCEEECCCC--CCCCChh--
Confidence            54 334444467778888888888776654 34677888888888774443333334788888888887  5666653  


Q ss_pred             hhcccccccCC
Q 039152          249 VKVGSSQLKYL  259 (259)
Q Consensus       249 ~~~~l~~L~~L  259 (259)
                       ..++++|++|
T Consensus       196 -l~~l~~L~~L  205 (210)
T d1h6ta2         196 -LAGLKNLDVL  205 (210)
T ss_dssp             -GTTCTTCSEE
T ss_pred             -hcCCCCCCEE
Confidence             3467777654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.72  E-value=7.2e-18  Score=138.52  Aligned_cols=164  Identities=19%  Similarity=0.180  Sum_probs=115.5

Q ss_pred             cccHHHHhCCCCccEEEcCC-CCCC-CCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCc-ccchhh
Q 039152           81 AIPQNLLRSMLQVRVLDLTD-MNLL-SLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIY-QLPVEV  155 (259)
Q Consensus        81 ~l~~~~~~~l~~L~~L~l~~-~~~~-~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~-~lp~~i  155 (259)
                      .+|+.+ .++++|++|++++ |.+. .+|..|+++++|++|++++|.+.+  +..+..+.+|+++++++|.+. .+|..+
T Consensus        67 ~lp~~l-~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l  145 (313)
T d1ogqa_          67 PIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI  145 (313)
T ss_dssp             ECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred             CCChHH-hcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhh
Confidence            577775 6899999999986 6776 789899999999999999998877  456777788888888887655 667778


Q ss_pred             ccCCcCCEEecCCCCCceeeCCC-------------------------------------------------CCCCCCcE
Q 039152          156 GQLTQLRSLDLRHCSNLQVIPLN-------------------------------------------------KHLPNLTS  186 (259)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~lp~~-------------------------------------------------~~l~~L~~  186 (259)
                      ++++.++++++++|...+.+|..                                                 +.+++++.
T Consensus       146 ~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~  225 (313)
T d1ogqa_         146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK  225 (313)
T ss_dssp             GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSE
T ss_pred             ccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            88888888887776555555542                                                 34556666


Q ss_pred             EEeeccCCCccCCCCcCCCCCCeEEeeccc-ccCCccccc-ccccceeeccccchhhhhhhh
Q 039152          187 LELEVNDANTLPRGGLFLEKPERIDLDANV-RLKDQDTVQ-LWGIEELSLAELLDHIKNFVN  246 (259)
Q Consensus       187 L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~-~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~  246 (259)
                      ++++++.+...+..++.+++|+.|++++|. ....|..+. +++|++|+|++| .....+|+
T Consensus       226 l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N-~l~g~iP~  286 (313)
T d1ogqa_         226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN-NLCGEIPQ  286 (313)
T ss_dssp             EECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS-EEEEECCC
T ss_pred             cccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCC-cccccCCC
Confidence            666666665444455667777777777763 334454444 777777777777 33335553

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=5.1e-17  Score=130.43  Aligned_cols=171  Identities=26%  Similarity=0.308  Sum_probs=138.9

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccC
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQL  158 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l  158 (259)
                      ..+|+++   .+++++|++++|.++.+|. .+.++++|++|++++|.++..+.++.+++|++|++++|++...|..+..+
T Consensus        23 ~~iP~~l---p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l   99 (266)
T d1p9ag_          23 TALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTL   99 (266)
T ss_dssp             SSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTC
T ss_pred             CeeCcCc---CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4567654   2578999999999998764 68899999999999999988556678999999999999999888889999


Q ss_pred             CcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCCC-cCCCCCCeEEeecccccCCc-cccc-ccccceee
Q 039152          159 TQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRGG-LFLEKPERIDLDANVRLKDQ-DTVQ-LWGIEELS  233 (259)
Q Consensus       159 ~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~~-~~l~~L~~L~l~~~~~~~~~-~~~~-l~~L~~L~  233 (259)
                      ++|+.|++++|. ...++..  ..+.+++.|++++|.++.+|..+ ..+++|+.+++++|.....+ ..+. +++|+.|+
T Consensus       100 ~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~  178 (266)
T d1p9ag_         100 PALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL  178 (266)
T ss_dssp             TTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEE
T ss_pred             cccccccccccc-cceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceee
Confidence            999999999854 4444443  78899999999999998887664 47899999999999544443 3333 99999999


Q ss_pred             ccccchhhhhhhhhhhhcccccccC
Q 039152          234 LAELLDHIKNFVNKLVKVGSSQLKY  258 (259)
Q Consensus       234 l~~~~~~~~~~~~~l~~~~l~~L~~  258 (259)
                      |++|  .++.+|+++.  .+++|++
T Consensus       179 Ls~N--~L~~lp~~~~--~~~~L~~  199 (266)
T d1p9ag_         179 LQEN--SLYTIPKGFF--GSHLLPF  199 (266)
T ss_dssp             CCSS--CCCCCCTTTT--TTCCCSE
T ss_pred             cccC--CCcccChhHC--CCCCCCE
Confidence            9999  7889988653  5666664

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=2.4e-16  Score=122.09  Aligned_cols=146  Identities=27%  Similarity=0.267  Sum_probs=123.9

Q ss_pred             HhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEec
Q 039152           87 LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDL  166 (259)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l  166 (259)
                      +..+++|++|++++|.++.++. ++.+++|++|++++|.+++.+.+..+++|++|++++|.+..++ .+..++.++.+++
T Consensus        64 l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~~l~~  141 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYL  141 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEEC
T ss_pred             HhhCCCCCEEeCCCccccCccc-cccCccccccccccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence            4679999999999999998875 7899999999999999999668999999999999999887765 5888999999999


Q ss_pred             CCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeeccc
Q 039152          167 RHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAE  236 (259)
Q Consensus       167 ~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~  236 (259)
                      ++|. +...+....+++|+.+++++|.++.++. +.++++|++|++++|.....+....+++|+.|+|++
T Consensus       142 ~~n~-l~~~~~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         142 GNNK-ITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             CSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEE
T ss_pred             cccc-cccccccccccccccccccccccccccc-ccCCCCCCEEECCCCCCCCChhhcCCCCCCEEEccC
Confidence            9854 4444444789999999999999988865 688999999999999554445444499999999864

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.4e-16  Score=124.78  Aligned_cols=163  Identities=21%  Similarity=0.206  Sum_probs=101.1

Q ss_pred             hCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecC
Q 039152           88 RSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLR  167 (259)
Q Consensus        88 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~  167 (259)
                      ..+++|++|++++|.+..++. +..+++|+++++++|.++..+.+..+++|++++++++....++ .+...+.++.+.++
T Consensus        60 ~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~l~~~  137 (227)
T d1h6ua2          60 QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLD  137 (227)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECC
T ss_pred             hcCCCCcEeecCCceeecccc-ccccccccccccccccccccccccccccccccccccccccccc-hhccccchhhhhch
Confidence            455555555555555554433 4555555555555555555444555555555555555444332 23344455555554


Q ss_pred             CCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeeccccchhhhhhhhh
Q 039152          168 HCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFVNK  247 (259)
Q Consensus       168 ~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  247 (259)
                      .|.... .+.....++|+.|++++|.+...+. +.++++|+.|++++|.....+....+++|++|++++|  .+..+++ 
T Consensus       138 ~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~l~~l~~l~~l~~L~~L~Ls~N--~lt~i~~-  212 (227)
T d1h6ua2         138 LNQITN-ISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNN--QISDVSP-  212 (227)
T ss_dssp             SSCCCC-CGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTS--CCCBCGG-
T ss_pred             hhhhch-hhhhccccccccccccccccccchh-hcccccceecccCCCccCCChhhcCCCCCCEEECcCC--cCCCCcc-
Confidence            432222 2112677889999999998876654 5789999999999984444344444999999999999  6777764 


Q ss_pred             hhhcccccccCC
Q 039152          248 LVKVGSSQLKYL  259 (259)
Q Consensus       248 l~~~~l~~L~~L  259 (259)
                        ...+++|+.|
T Consensus       213 --l~~l~~L~~L  222 (227)
T d1h6ua2         213 --LANTSNLFIV  222 (227)
T ss_dssp             --GTTCTTCCEE
T ss_pred             --cccCCCCCEE
Confidence              4477887754

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.5e-15  Score=116.45  Aligned_cols=142  Identities=20%  Similarity=0.280  Sum_probs=119.8

Q ss_pred             HhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEec
Q 039152           87 LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDL  166 (259)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l  166 (259)
                      +..+++|++|++++|.++.+++ ++.+++|++|++++|.+...+.++.+++|++++++++.+..++ .+..+++|+.|++
T Consensus        58 l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l  135 (199)
T d2omxa2          58 VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLEL  135 (199)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred             cccCCCcCcCccccccccCccc-ccCCccccccccccccccccccccccccccccccccccccccc-ccchhhhhHHhhh
Confidence            4679999999999999998876 8999999999999999888667999999999999999887654 4788999999999


Q ss_pred             CCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCccccccccccee
Q 039152          167 RHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEEL  232 (259)
Q Consensus       167 ~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L  232 (259)
                      ++|. +..++....+++|+.|++.+|.++.++. ++++++|+.|++++|.....+....+++|+.|
T Consensus       136 ~~n~-l~~~~~l~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L~ls~N~i~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         136 SSNT-ISDISALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSDISVLAKLTNLESL  199 (199)
T ss_dssp             CSSC-CCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred             hhhh-hcccccccccccccccccccccccCCcc-ccCCCCCCEEECCCCCCCCCccccCCCCCCcC
Confidence            9854 5556655889999999999999998875 68999999999999954444444448888765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.64  E-value=9.9e-16  Score=125.04  Aligned_cols=66  Identities=20%  Similarity=0.130  Sum_probs=38.1

Q ss_pred             CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecccccCCccccc-ccccceeeccccchhhhhhhh
Q 039152          179 KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRLKDQDTVQ-LWGIEELSLAELLDHIKNFVN  246 (259)
Q Consensus       179 ~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~  246 (259)
                      .+++.++.|++++|.++.+ |..+.++++|++|++++|.....+..+. +++|+.|++++|  .++.++.
T Consensus       192 ~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N--~i~~i~~  259 (305)
T d1xkua_         192 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN--NISAIGS  259 (305)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS--CCCCCCT
T ss_pred             hccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCC--ccCccCh
Confidence            4555666666666666544 3334466667777776664333333333 667777777666  5555543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=1.6e-15  Score=107.33  Aligned_cols=102  Identities=25%  Similarity=0.257  Sum_probs=71.1

Q ss_pred             cEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCCCCCc
Q 039152           94 RVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNL  172 (259)
Q Consensus        94 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~  172 (259)
                      |+|++++|.++.++. +..+.+|++|++++|.++. |+.++.+++|++|++++|.++.+| +++.+++|+++++++ +.+
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~-N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN-NRL   77 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS-SCC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCC-Ccc
Confidence            577788888777764 7777778888888887777 666777777888888887777775 367777777777776 344


Q ss_pred             eeeCCC---CCCCCCcEEEeeccCCCccC
Q 039152          173 QVIPLN---KHLPNLTSLELEVNDANTLP  198 (259)
Q Consensus       173 ~~lp~~---~~l~~L~~L~l~~~~~~~~p  198 (259)
                      ..++..   ..+++|+.|++++|.++..+
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            444432   55666777777776665443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.63  E-value=4.1e-16  Score=127.84  Aligned_cols=167  Identities=23%  Similarity=0.261  Sum_probs=125.1

Q ss_pred             CCCccEEEcCCCCCC---CCchhhcCCCCCcEEEecC-CCCCC--chhhhCCCCCcEEEecCCCCccc-chhhccCCcCC
Q 039152           90 MLQVRVLDLTDMNLL---SLPSSIGLLTNLHTLCLYS-CILKD--MAVISDLKKLEILCLHGSSIYQL-PVEVGQLTQLR  162 (259)
Q Consensus        90 l~~L~~L~l~~~~~~---~lp~~i~~l~~L~~L~l~~-~~~~~--~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~  162 (259)
                      -.+++.|+++++.+.   .+|+.++++++|++|++++ |.+.+  |++++++++|++|++++|++..+ |..+..+..|+
T Consensus        49 ~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             cEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence            346899999999887   4899999999999999986 77775  88999999999999999999855 45588999999


Q ss_pred             EEecCCCCCceeeCCC-CCCCCCcEEEeeccCCC-ccCCCCcCCCCC-CeEE----------------------------
Q 039152          163 SLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDAN-TLPRGGLFLEKP-ERID----------------------------  211 (259)
Q Consensus       163 ~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~-~~p~~~~~l~~L-~~L~----------------------------  211 (259)
                      ++++++|.....+|.. ..+++++.+++++|.+. .+|..++.+.++ +.+.                            
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~  208 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM  208 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSE
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999998777677665 88899999999998874 667665544443 3333                            


Q ss_pred             -------------------eecccccCCcccc-cccccceeeccccchhhhhhhhhhhhcccccccCC
Q 039152          212 -------------------LDANVRLKDQDTV-QLWGIEELSLAELLDHIKNFVNKLVKVGSSQLKYL  259 (259)
Q Consensus       212 -------------------l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~L  259 (259)
                                         +.++.....+..+ .+++|+.|++++| .....+|+.+.  .+++|++|
T Consensus       209 ~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N-~l~g~iP~~l~--~L~~L~~L  273 (313)
T d1ogqa_         209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN-RIYGTLPQGLT--QLKFLHSL  273 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSS-CCEECCCGGGG--GCTTCCEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccCccC-eecccCChHHh--CCCCCCEE
Confidence                               3333111111122 2778888888888 44447777653  67777754

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.2e-16  Score=117.25  Aligned_cols=110  Identities=17%  Similarity=0.167  Sum_probs=69.5

Q ss_pred             hCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchh-hccCCcCCEEec
Q 039152           88 RSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDL  166 (259)
Q Consensus        88 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l  166 (259)
                      .++..+|.|++++|.++.+|..+..+.+|++|++++|.++..+.+..+++|++|++++|++..+|+. +..+++|++|++
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            4556677777777777777665566777777777777776654566677777777777777766655 345666667666


Q ss_pred             CCCCCceeeCCC---CCCCCCcEEEeeccCCCccC
Q 039152          167 RHCSNLQVIPLN---KHLPNLTSLELEVNDANTLP  198 (259)
Q Consensus       167 ~~~~~~~~lp~~---~~l~~L~~L~l~~~~~~~~p  198 (259)
                      ++| .+..++..   ..+++|++|++++|+++..|
T Consensus        95 ~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~  128 (162)
T d1a9na_          95 TNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKK  128 (162)
T ss_dssp             CSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             ccc-cccccccccccccccccchhhcCCCcccccc
Confidence            664 23333321   44555566666555555444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=2.1e-15  Score=106.76  Aligned_cols=101  Identities=20%  Similarity=0.146  Sum_probs=88.1

Q ss_pred             cEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCc
Q 039152          117 HTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANT  196 (259)
Q Consensus       117 ~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~  196 (259)
                      |+|++++|.++..+.++.+++|++|++++|.++.+|++++.+++|++|++++ +.+..+|....+++|+.|++++|.++.
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~-N~i~~l~~~~~l~~L~~L~l~~N~i~~   79 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVDGVANLPRLQELLLCNNRLQQ   79 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCGGGTTCSSCCEEECCSSCCCS
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhccccccccc-ccccccCccccccccCeEECCCCccCC
Confidence            6899999999996678999999999999999999999999999999999999 566777766899999999999999987


Q ss_pred             cCC--CCcCCCCCCeEEeeccccc
Q 039152          197 LPR--GGLFLEKPERIDLDANVRL  218 (259)
Q Consensus       197 ~p~--~~~~l~~L~~L~l~~~~~~  218 (259)
                      +|.  .+..+++|+.|++++|...
T Consensus        80 ~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          80 SAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCchhhcCCCCCCEEECCCCcCC
Confidence            774  4568888999998887443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=6.6e-15  Score=118.96  Aligned_cols=157  Identities=24%  Similarity=0.286  Sum_probs=91.7

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCCC--------------------------chhhcCCCCCcEEEecCCCCCC--chh
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLSL--------------------------PSSIGLLTNLHTLCLYSCILKD--MAV  131 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~l--------------------------p~~i~~l~~L~~L~l~~~~~~~--~~~  131 (259)
                      ..+|+..|.+++.|++|+++++.+..+                          |..+.++++|++|++++|.+..  +..
T Consensus        45 ~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~  124 (284)
T d1ozna_          45 SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL  124 (284)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             CCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCcccccccccc
Confidence            466766677777788888777654321                          2234555666666666666554  344


Q ss_pred             hhCCCCCcEEEecCCCCcccchh-hccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCcc-CCCCcCCCCC
Q 039152          132 ISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTL-PRGGLFLEKP  207 (259)
Q Consensus       132 ~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L  207 (259)
                      +....+|+++++++|.++.+|.. +..+++|++|++++| .+..++..  .++++|+.+++++|.++.+ |..+..+++|
T Consensus       125 ~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N-~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L  203 (284)
T d1ozna_         125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL  203 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             cchhcccchhhhccccccccChhHhccccchhhcccccC-cccccchhhhccccccchhhhhhccccccChhHhhhhhhc
Confidence            55566666666666666655443 555666666666663 34444443  5566666666666666533 4555566666


Q ss_pred             CeEEeecccccCCcc-ccc-ccccceeecccc
Q 039152          208 ERIDLDANVRLKDQD-TVQ-LWGIEELSLAEL  237 (259)
Q Consensus       208 ~~L~l~~~~~~~~~~-~~~-l~~L~~L~l~~~  237 (259)
                      +.|++++|.....+. .+. +++|++|+++++
T Consensus       204 ~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         204 MTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             CEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             ccccccccccccccccccccccccCEEEecCC
Confidence            666666664443322 222 666666666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.59  E-value=5.2e-15  Score=112.76  Aligned_cols=123  Identities=20%  Similarity=0.178  Sum_probs=88.8

Q ss_pred             ccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC---chhhhCCCCCcEEEecCCCCcccch-hhccCCcCCEEecCC
Q 039152           93 VRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD---MAVISDLKKLEILCLHGSSIYQLPV-EVGQLTQLRSLDLRH  168 (259)
Q Consensus        93 L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~  168 (259)
                      .++++.+++.++.+|..+.  .++++|++++|.++.   ...+..+++|++|++++|.+..++. .+..+++|++|++++
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            3567777777777777653  577888888888764   3556778888888888887775544 466778888888887


Q ss_pred             CCCceeeCCC--CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeeccccc
Q 039152          169 CSNLQVIPLN--KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDANVRL  218 (259)
Q Consensus       169 ~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~  218 (259)
                      | .+..+|..  .++++|++|++++|.++.+|.. +..+++|++|++.+|...
T Consensus        88 N-~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          88 N-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             C-CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             c-cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            4 55566654  6778888888888888777654 447788888888877433

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=1.2e-14  Score=121.79  Aligned_cols=162  Identities=25%  Similarity=0.262  Sum_probs=102.2

Q ss_pred             CCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCC
Q 039152           89 SMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRH  168 (259)
Q Consensus        89 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~  168 (259)
                      .+++|+.|++++|.++.++ .+..+++|++|++++|.+++.+.++.+++|++++++++.+..+++ +..++.++.+.+..
T Consensus       217 ~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~l~~l~~~~  294 (384)
T d2omza2         217 ILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNE  294 (384)
T ss_dssp             GCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCS
T ss_pred             ccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCcccccccCCEeeccCcccCCCCc-cccccccccccccc
Confidence            3455555555555555443 245555555555555555553345555555555555555554432 44455555555555


Q ss_pred             CCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeeccccchhhhhhhhhh
Q 039152          169 CSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFVNKL  248 (259)
Q Consensus       169 ~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l  248 (259)
                      |. +..++....+++++.|++++|.++.++. +..+++|++|++++|.....+....+++|+.|++++|  .+..+++  
T Consensus       295 n~-l~~~~~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N--~l~~l~~--  368 (384)
T d2omza2         295 NQ-LEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHN--QISDLTP--  368 (384)
T ss_dssp             SC-CSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS--CCCBCGG--
T ss_pred             cc-cccccccchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCC--cCCCChh--
Confidence            32 2223323677889999999999987764 5789999999999995444443334999999999999  6677765  


Q ss_pred             hhcccccccCC
Q 039152          249 VKVGSSQLKYL  259 (259)
Q Consensus       249 ~~~~l~~L~~L  259 (259)
                       ..++++|+.|
T Consensus       369 -l~~l~~L~~L  378 (384)
T d2omza2         369 -LANLTRITQL  378 (384)
T ss_dssp             -GTTCTTCSEE
T ss_pred             -hccCCCCCEe
Confidence             4477887754

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=3.1e-14  Score=111.21  Aligned_cols=146  Identities=20%  Similarity=0.248  Sum_probs=121.0

Q ss_pred             HhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEec
Q 039152           87 LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDL  166 (259)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l  166 (259)
                      |.++++++++++.+|.++.++. +.++++|+++.++++.......+...+.++.+.++++.+...+ .+..+++|++|++
T Consensus        81 l~~l~~l~~l~~~~n~~~~i~~-l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l  158 (227)
T d1h6ua2          81 LKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSI  158 (227)
T ss_dssp             GTTCCSCCEEECCSCCCSCCGG-GTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEEC
T ss_pred             cccccccccccccccccccccc-ccccccccccccccccccccchhccccchhhhhchhhhhchhh-hhccccccccccc
Confidence            6799999999999999988775 8899999999999998888777888899999999998877543 4778899999999


Q ss_pred             CCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeeccc
Q 039152          167 RHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAE  236 (259)
Q Consensus       167 ~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~  236 (259)
                      ++|.. ...+..+++++|+.|++++|.++.+|. +.++++|+.|++++|.....+..-.+++|+.|++++
T Consensus       159 ~~n~~-~~~~~l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         159 GNAQV-SDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             CSSCC-CCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEE
T ss_pred             ccccc-ccchhhcccccceecccCCCccCCChh-hcCCCCCCEEECcCCcCCCCcccccCCCCCEEEeeC
Confidence            98643 333334789999999999999998875 588999999999999544444433499999999864

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.6e-14  Score=116.58  Aligned_cols=174  Identities=24%  Similarity=0.258  Sum_probs=123.4

Q ss_pred             cccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC---------------------------ch
Q 039152           79 FFAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD---------------------------MA  130 (259)
Q Consensus        79 l~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~---------------------------~~  130 (259)
                      +..+|..+   .+.+++|++++|.++.+|. .+.++++|++|++++|.+..                           +.
T Consensus        23 L~~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~   99 (284)
T d1ozna_          23 LQAVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA   99 (284)
T ss_dssp             CSSCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             CCccCCCC---CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccch
Confidence            34566654   3578999999999998875 68999999999999886542                           23


Q ss_pred             hhhCCCCCcEEEecCCCCcccchh-hccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCC-CCcCCCC
Q 039152          131 VISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPR-GGLFLEK  206 (259)
Q Consensus       131 ~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~-~~~~l~~  206 (259)
                      .++.+++|++|++++|.+..++.. +....+|+.+++++ +.+..+|..  ..+++|+.|++++|.++.+|. .+.++++
T Consensus       100 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~-N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~  178 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS  178 (284)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             hhcccccCCEEecCCcccccccccccchhcccchhhhcc-ccccccChhHhccccchhhcccccCcccccchhhhccccc
Confidence            455667778888877777655443 56677777888877 445556543  567788888888888876654 3457888


Q ss_pred             CCeEEeecccccCC-ccccc-ccccceeeccccchhhhhhhhhhhhcccccccCC
Q 039152          207 PERIDLDANVRLKD-QDTVQ-LWGIEELSLAELLDHIKNFVNKLVKVGSSQLKYL  259 (259)
Q Consensus       207 L~~L~l~~~~~~~~-~~~~~-l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~L  259 (259)
                      |+.+.+.+|..... +..+. +++|+.|+++++  .+..++... +..+++|++|
T Consensus       179 L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N--~i~~~~~~~-~~~~~~L~~L  230 (284)
T d1ozna_         179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN--NLSALPTEA-LAPLRALQYL  230 (284)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSS--CCSCCCHHH-HTTCTTCCEE
T ss_pred             cchhhhhhccccccChhHhhhhhhccccccccc--ccccccccc-cccccccCEE
Confidence            88888888744433 33333 788888888888  666666544 5567777653

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.53  E-value=1.2e-13  Score=112.37  Aligned_cols=109  Identities=18%  Similarity=0.108  Sum_probs=75.6

Q ss_pred             CCcEEEecCCCCc-ccchhhccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEee
Q 039152          137 KLEILCLHGSSIY-QLPVEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLD  213 (259)
Q Consensus       137 ~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~  213 (259)
                      +|++|++++|... ..+..+..++.++.|++++| .+..++..  .++++|++|++++|.++.+|.++..+++|+.|+++
T Consensus       172 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls  250 (305)
T d1xkua_         172 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH  250 (305)
T ss_dssp             TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECC
T ss_pred             ccCEEECCCCcCCCCChhHhhccccccccccccc-cccccccccccccccceeeecccccccccccccccccCCCEEECC
Confidence            3444444444433 22345667777888888874 45555544  77899999999999999999999999999999999


Q ss_pred             cccccCCcccc--------cccccceeeccccchhhhhhhh
Q 039152          214 ANVRLKDQDTV--------QLWGIEELSLAELLDHIKNFVN  246 (259)
Q Consensus       214 ~~~~~~~~~~~--------~l~~L~~L~l~~~~~~~~~~~~  246 (259)
                      +|.....+...        .+.+|+.|+++++......+++
T Consensus       251 ~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~  291 (305)
T d1xkua_         251 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP  291 (305)
T ss_dssp             SSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred             CCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCH
Confidence            98433332211        1788999999999322334444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.4e-14  Score=105.96  Aligned_cols=126  Identities=16%  Similarity=0.114  Sum_probs=102.9

Q ss_pred             hcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCCCCCceeeCCC--CCCCCCcE
Q 039152          110 IGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTS  186 (259)
Q Consensus       110 i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~  186 (259)
                      +.++..+|.|++++|.++. +.....+++|++|++++|.++.++ ++..+++|++|++++| .+..+|..  ..+++|+.
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCE
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccc-cccCCCcccccccccccc
Confidence            5677889999999999998 555577899999999999999885 5889999999999995 46677765  67899999


Q ss_pred             EEeeccCCCccCC--CCcCCCCCCeEEeecccccCCcc----ccc-ccccceeecccc
Q 039152          187 LELEVNDANTLPR--GGLFLEKPERIDLDANVRLKDQD----TVQ-LWGIEELSLAEL  237 (259)
Q Consensus       187 L~l~~~~~~~~p~--~~~~l~~L~~L~l~~~~~~~~~~----~~~-l~~L~~L~l~~~  237 (259)
                      |++++|.++.++.  .+..+++|+.|++.+|.....+.    .+. +++|+.|+-...
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~~i  149 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  149 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             ceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCCCC
Confidence            9999999987764  46789999999999996554432    233 899998886554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=1e-13  Score=115.88  Aligned_cols=147  Identities=21%  Similarity=0.224  Sum_probs=126.1

Q ss_pred             HhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEec
Q 039152           87 LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDL  166 (259)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l  166 (259)
                      +..+++|+.+++.+|.+..++. ++.+++|++|+++++.+...+.+..++.++.++++.|.+..++ .+..++++++|++
T Consensus       237 l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~-~~~~~~~l~~L~l  314 (384)
T d2omza2         237 LASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS-PISNLKNLTYLTL  314 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCG-GGGGCTTCSEEEC
T ss_pred             hhcccccchhccccCccCCCCc-ccccccCCEeeccCcccCCCCcccccccccccccccccccccc-ccchhcccCeEEC
Confidence            5789999999999999998776 8889999999999999988667889999999999999988764 4788999999999


Q ss_pred             CCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeecccc
Q 039152          167 RHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAEL  237 (259)
Q Consensus       167 ~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~  237 (259)
                      ++| .+..++....+++|++|++++|.++.+| .+.++++|++|++++|.....++...+++|+.|+|+++
T Consensus       315 s~n-~l~~l~~l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         315 YFN-NISDISPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             CSS-CCSCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCCE
T ss_pred             CCC-CCCCCcccccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCChhhccCCCCCEeeCCCC
Confidence            986 4555554578999999999999999887 57899999999999985544444444999999999887

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=7.3e-14  Score=109.90  Aligned_cols=176  Identities=14%  Similarity=0.129  Sum_probs=106.9

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCC-Cc-hhhcCCCCCcEEEecC-CCCCC--chhhhCCCCCcEEEecCCCCcccch-
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLS-LP-SSIGLLTNLHTLCLYS-CILKD--MAVISDLKKLEILCLHGSSIYQLPV-  153 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~-lp-~~i~~l~~L~~L~l~~-~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~-  153 (259)
                      ..+|.+.|.++++|++|++++|.+.. ++ ..+..+..++++.+.. +.+..  +..+..+++|++++++++.+...+. 
T Consensus        42 ~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~  121 (242)
T d1xwdc1          42 RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV  121 (242)
T ss_dssp             CEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCC
T ss_pred             CccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhhhcccccc
Confidence            45566556666677777776666553 22 2455666666666543 34444  3445666777777777766654432 


Q ss_pred             -hhccCCcCCEEecCCCCCceeeCCC--CC-CCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecc-cccCCccc-cc-c
Q 039152          154 -EVGQLTQLRSLDLRHCSNLQVIPLN--KH-LPNLTSLELEVNDANTLPRGGLFLEKPERIDLDAN-VRLKDQDT-VQ-L  226 (259)
Q Consensus       154 -~i~~l~~L~~L~l~~~~~~~~lp~~--~~-l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~-~~~~~~~~-~~-l  226 (259)
                       .+..+..+..+...+ ..+..++..  .. ...++.|++.+|.++.++.......+++.+....+ .....+.. +. +
T Consensus       122 ~~~~~l~~l~~~~~~n-~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l  200 (242)
T d1xwdc1         122 HKIHSLQKVLLDIQDN-INIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA  200 (242)
T ss_dssp             TTTCBSSCEEEEEESC-TTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTS
T ss_pred             cccccccccccccccc-cccccccccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCC
Confidence             122333343333333 444455443  22 34778889999999888887777777777765444 33333333 23 8


Q ss_pred             cccceeeccccchhhhhhhhhhhhcccccccCC
Q 039152          227 WGIEELSLAELLDHIKNFVNKLVKVGSSQLKYL  259 (259)
Q Consensus       227 ~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~L  259 (259)
                      ++|+.|+++++  .++.+|... +..+++|+.|
T Consensus       201 ~~L~~L~Ls~N--~l~~l~~~~-~~~l~~L~~l  230 (242)
T d1xwdc1         201 SGPVILDISRT--RIHSLPSYG-LENLKKLRAR  230 (242)
T ss_dssp             CCCSEEECTTS--CCCCCCSSS-CTTCCEEESS
T ss_pred             CCCCEEECCCC--cCCccCHHH-HcCCcccccC
Confidence            99999999999  788887654 5566666653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.44  E-value=2.1e-13  Score=103.68  Aligned_cols=115  Identities=26%  Similarity=0.268  Sum_probs=98.3

Q ss_pred             ccccHHHHhCCCCccEEEcCCCCCCC-C-chhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-
Q 039152           80 FAIPQNLLRSMLQVRVLDLTDMNLLS-L-PSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE-  154 (259)
Q Consensus        80 ~~l~~~~~~~l~~L~~L~l~~~~~~~-l-p~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-  154 (259)
                      ..+|.++   .+++++|++++|.++. + +..+..+++|+.|++++|.+..  +..+..+++|++|++++|++..+|+. 
T Consensus        21 ~~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~   97 (192)
T d1w8aa_          21 KEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM   97 (192)
T ss_dssp             SSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSS
T ss_pred             CccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHH
Confidence            4667765   3689999999999974 4 4467899999999999999988  57788899999999999999988765 


Q ss_pred             hccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccC
Q 039152          155 VGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLP  198 (259)
Q Consensus       155 i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p  198 (259)
                      +.++++|++|++++ +.+..+|..  ..+++|++|++++|.+...+
T Consensus        98 F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_          98 FLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             STTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             HhCCCcccccccCC-ccccccCHHHhcCCccccccccccccccccc
Confidence            88999999999999 567777776  78999999999999886544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.2e-14  Score=114.96  Aligned_cols=171  Identities=18%  Similarity=0.242  Sum_probs=119.3

Q ss_pred             HHHHhCCCCccEEEcCCCCCC-CCchhhcCCCCCcEEEecCCC-CCC--ch-hhhCCCCCcEEEecCC-CCc--ccchhh
Q 039152           84 QNLLRSMLQVRVLDLTDMNLL-SLPSSIGLLTNLHTLCLYSCI-LKD--MA-VISDLKKLEILCLHGS-SIY--QLPVEV  155 (259)
Q Consensus        84 ~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~-~~~--~~-~~~~l~~L~~L~l~~~-~i~--~lp~~i  155 (259)
                      ..++..+++|++|++.++.+. ..+..++.+++|++|++++|. +++  .. -...+++|++|++++| .+.  .++..+
T Consensus        64 ~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~  143 (284)
T d2astb2          64 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV  143 (284)
T ss_dssp             HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH
T ss_pred             HHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhh
Confidence            446788999999999999887 456678889999999999864 654  23 3456899999999987 444  333344


Q ss_pred             cc-CCcCCEEecCCCCC-cee--eCCC-CCCCCCcEEEeeccC-CC-ccCCCCcCCCCCCeEEeecccccCCcc--ccc-
Q 039152          156 GQ-LTQLRSLDLRHCSN-LQV--IPLN-KHLPNLTSLELEVND-AN-TLPRGGLFLEKPERIDLDANVRLKDQD--TVQ-  225 (259)
Q Consensus       156 ~~-l~~L~~L~l~~~~~-~~~--lp~~-~~l~~L~~L~l~~~~-~~-~~p~~~~~l~~L~~L~l~~~~~~~~~~--~~~-  225 (259)
                      .. .++|+.|++++|.. +..  +... .++++|++|++++|. ++ ..+..+.++++|++|++++|....+..  .+. 
T Consensus       144 ~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~  223 (284)
T d2astb2         144 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE  223 (284)
T ss_dssp             HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG
T ss_pred             cccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhc
Confidence            44 46899999987532 211  1111 568899999999875 55 455667889999999999986555422  222 


Q ss_pred             ccccceeeccccchhhhhhhhhhhhccccccc
Q 039152          226 LWGIEELSLAELLDHIKNFVNKLVKVGSSQLK  257 (259)
Q Consensus       226 l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~  257 (259)
                      +++|+.|++.+| . .......+ ...+|+|+
T Consensus       224 ~~~L~~L~l~~~-~-~d~~l~~l-~~~lp~L~  252 (284)
T d2astb2         224 IPTLKTLQVFGI-V-PDGTLQLL-KEALPHLQ  252 (284)
T ss_dssp             CTTCCEEECTTS-S-CTTCHHHH-HHHSTTSE
T ss_pred             CCCCCEEeeeCC-C-CHHHHHHH-HHhCcccc
Confidence            899999999988 3 33333333 34667664

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.40  E-value=2.9e-15  Score=114.78  Aligned_cols=79  Identities=23%  Similarity=0.285  Sum_probs=36.6

Q ss_pred             hCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEec
Q 039152           88 RSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDL  166 (259)
Q Consensus        88 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l  166 (259)
                      +.+++|++|++++|.++.++. +..+++|++|++++|.++. +.....+++|++|++++|.++.++ .+..+++|++|++
T Consensus        45 ~~L~~L~~L~Ls~n~I~~i~~-l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~L  122 (198)
T d1m9la_          45 STLKACKHLALSTNNIEKISS-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYM  122 (198)
T ss_dssp             HHTTTCCEEECSEEEESCCCC-HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSEEEE
T ss_pred             hcccccceeECcccCCCCccc-ccCCccccChhhcccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence            445555555555555544432 4445555555555555444 222222334555555555444432 2444444444444


Q ss_pred             CC
Q 039152          167 RH  168 (259)
Q Consensus       167 ~~  168 (259)
                      ++
T Consensus       123 ~~  124 (198)
T d1m9la_         123 SN  124 (198)
T ss_dssp             SE
T ss_pred             cc
Confidence            44

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.8e-13  Score=109.34  Aligned_cols=169  Identities=23%  Similarity=0.244  Sum_probs=112.3

Q ss_pred             CCCCccEEEcCCCCCC--CCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCC-CCc--ccchhhccCCcC
Q 039152           89 SMLQVRVLDLTDMNLL--SLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGS-SIY--QLPVEVGQLTQL  161 (259)
Q Consensus        89 ~l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~-~i~--~lp~~i~~l~~L  161 (259)
                      ....|++|+++++.+.  .++..+..+++|++|++++|.+.+  +..++.+++|++|++++| .++  .+..-...+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            4557888899888776  355567788889999999888776  677888889999999885 555  233334567889


Q ss_pred             CEEecCCCCCceeeCC--C--CCCCCCcEEEeeccC--CC--ccCCCCcCCCCCCeEEeecccccCC--cccc-cccccc
Q 039152          162 RSLDLRHCSNLQVIPL--N--KHLPNLTSLELEVND--AN--TLPRGGLFLEKPERIDLDANVRLKD--QDTV-QLWGIE  230 (259)
Q Consensus       162 ~~L~l~~~~~~~~lp~--~--~~l~~L~~L~l~~~~--~~--~~p~~~~~l~~L~~L~l~~~~~~~~--~~~~-~l~~L~  230 (259)
                      ++|++++|..+.....  .  ...++|+.|+++++.  ++  .++....++++|++|++++|....+  ...+ .+++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            9999988765432111  0  345788899888652  33  3333345688899999988755543  2222 388899


Q ss_pred             eeeccccchhhhhhhhhhhhcccccccCC
Q 039152          231 ELSLAELLDHIKNFVNKLVKVGSSQLKYL  259 (259)
Q Consensus       231 ~L~l~~~~~~~~~~~~~l~~~~l~~L~~L  259 (259)
                      +|++++|.......+..+  ..+|+|+.|
T Consensus       204 ~L~L~~C~~i~~~~l~~L--~~~~~L~~L  230 (284)
T d2astb2         204 HLSLSRCYDIIPETLLEL--GEIPTLKTL  230 (284)
T ss_dssp             EEECTTCTTCCGGGGGGG--GGCTTCCEE
T ss_pred             EEECCCCCCCChHHHHHH--hcCCCCCEE
Confidence            999988722223333333  356777653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.33  E-value=9e-15  Score=111.94  Aligned_cols=145  Identities=19%  Similarity=0.210  Sum_probs=114.1

Q ss_pred             CccEEEcCCC--CCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCCC
Q 039152           92 QVRVLDLTDM--NLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHC  169 (259)
Q Consensus        92 ~L~~L~l~~~--~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~  169 (259)
                      .++.+++.+.  .+..+|.+++.+++|++|++++|.++..+.+..+++|++|++++|.++.+|.....+++|++|++++|
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N  103 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEE
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhcccccccccccccccccccccccccc
Confidence            3455666554  45678889999999999999999999866799999999999999999999876677788999999985


Q ss_pred             CCceeeCCCCCCCCCcEEEeeccCCCccCC--CCcCCCCCCeEEeecccccCC-cc----------ccc-ccccceeecc
Q 039152          170 SNLQVIPLNKHLPNLTSLELEVNDANTLPR--GGLFLEKPERIDLDANVRLKD-QD----------TVQ-LWGIEELSLA  235 (259)
Q Consensus       170 ~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~--~~~~l~~L~~L~l~~~~~~~~-~~----------~~~-l~~L~~L~l~  235 (259)
                       .+..++....+++|+.|++++|.++.++.  .+..+++|+.|++.+|..... +.          .+. +++|+.|+-.
T Consensus       104 -~i~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~  182 (198)
T d1m9la_         104 -QIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGM  182 (198)
T ss_dssp             -ECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESSG
T ss_pred             -cccccccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCCc
Confidence             45555544788999999999999987763  467899999999999843222 11          122 8899988754


Q ss_pred             cc
Q 039152          236 EL  237 (259)
Q Consensus       236 ~~  237 (259)
                      ..
T Consensus       183 ~I  184 (198)
T d1m9la_         183 PV  184 (198)
T ss_dssp             GG
T ss_pred             cC
Confidence            33

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.28  E-value=2.3e-11  Score=99.95  Aligned_cols=59  Identities=19%  Similarity=0.200  Sum_probs=44.1

Q ss_pred             CCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeeccccchhhhhhhh
Q 039152          181 LPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFVN  246 (259)
Q Consensus       181 l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  246 (259)
                      +++|++|++++|.++.+|..   +++|+.|++++|.....+.  .+++|++|++++|  .++.+|.
T Consensus       283 ~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~L~~l~~--~~~~L~~L~L~~N--~L~~lp~  341 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPE--LPQNLKQLHVEYN--PLREFPD  341 (353)
T ss_dssp             CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC--CCTTCCEEECCSS--CCSSCCC
T ss_pred             CCCCCEEECCCCccCccccc---cCCCCEEECCCCcCCcccc--ccCCCCEEECcCC--cCCCCCc
Confidence            46788888888888888865   6788888888875444332  2568899999998  5777775

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.2e-11  Score=95.33  Aligned_cols=174  Identities=16%  Similarity=0.126  Sum_probs=121.4

Q ss_pred             cccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC---chhhhCCCCCcEEEecC-CCCcccc-
Q 039152           79 FFAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD---MAVISDLKKLEILCLHG-SSIYQLP-  152 (259)
Q Consensus        79 l~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~-~~i~~lp-  152 (259)
                      +..+|++++   +++++|++++|.++.+|. .+.++++|++|++++|.+..   +..+..+++++++.+.. +.+..++ 
T Consensus        20 l~~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~   96 (242)
T d1xwdc1          20 VTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP   96 (242)
T ss_dssp             CSSCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECT
T ss_pred             CCCcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccc
Confidence            346677653   578999999999998876 57899999999999998876   35678899999999865 5666554 


Q ss_pred             hhhccCCcCCEEecCCCCCceeeCCCC---CCCCCcEEEeeccCCCccCCC-CcCC-CCCCeEEeecccccCCccc-ccc
Q 039152          153 VEVGQLTQLRSLDLRHCSNLQVIPLNK---HLPNLTSLELEVNDANTLPRG-GLFL-EKPERIDLDANVRLKDQDT-VQL  226 (259)
Q Consensus       153 ~~i~~l~~L~~L~l~~~~~~~~lp~~~---~l~~L~~L~l~~~~~~~~p~~-~~~l-~~L~~L~l~~~~~~~~~~~-~~l  226 (259)
                      ..+..+++|+++++.+|. +...+...   .+..+..+...++.+..++.. +..+ ..++.|++.++.....+.. +..
T Consensus        97 ~~~~~l~~L~~l~l~~~~-l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~  175 (242)
T d1xwdc1          97 EAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNG  175 (242)
T ss_dssp             TSEECCTTCCEEEEESCC-CCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTT
T ss_pred             ccccccccccccccchhh-hcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccc
Confidence            447899999999999854 44555443   344455555556667766544 2344 3788888887744443333 335


Q ss_pred             ccccee-eccccchhhhhhhhhhhhcccccccCC
Q 039152          227 WGIEEL-SLAELLDHIKNFVNKLVKVGSSQLKYL  259 (259)
Q Consensus       227 ~~L~~L-~l~~~~~~~~~~~~~l~~~~l~~L~~L  259 (259)
                      .++..+ .+.++  .++.+|.+. +.++++|++|
T Consensus       176 ~~l~~~~~l~~n--~l~~l~~~~-f~~l~~L~~L  206 (242)
T d1xwdc1         176 TQLDELNLSDNN--NLEELPNDV-FHGASGPVIL  206 (242)
T ss_dssp             CCEEEEECTTCT--TCCCCCTTT-TTTSCCCSEE
T ss_pred             hhhhcccccccc--ccccccHHH-hcCCCCCCEE
Confidence            555555 45555  788888765 6678888764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.11  E-value=5.2e-10  Score=91.60  Aligned_cols=99  Identities=21%  Similarity=0.275  Sum_probs=61.5

Q ss_pred             CccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCCCC
Q 039152           92 QVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCS  170 (259)
Q Consensus        92 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~  170 (259)
                      ++++|+++++.++.+|+.   +++|++|++++|.++. |..   +.+|+.|++++|++..++.-   .+.|++|++++| 
T Consensus        39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n-  108 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN-  108 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSS-
T ss_pred             CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhhh---cccccccccccc-
Confidence            466777777777776653   3567777777777766 432   34667777777766655431   134677777763 


Q ss_pred             CceeeCCCCCCCCCcEEEeeccCCCccCCC
Q 039152          171 NLQVIPLNKHLPNLTSLELEVNDANTLPRG  200 (259)
Q Consensus       171 ~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~  200 (259)
                      .+..+|..+.+++|++|+++++.+...|..
T Consensus       109 ~l~~lp~~~~l~~L~~L~l~~~~~~~~~~~  138 (353)
T d1jl5a_         109 QLEKLPELQNSSFLKIIDVDNNSLKKLPDL  138 (353)
T ss_dssp             CCSSCCCCTTCTTCCEEECCSSCCSCCCCC
T ss_pred             ccccccchhhhccceeeccccccccccccc
Confidence            455666556677777777776666555543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.9e-10  Score=82.98  Aligned_cols=100  Identities=19%  Similarity=0.142  Sum_probs=47.0

Q ss_pred             cEEEcCCCCCCCCchhhcCCCCCcEEEecCCC-CCC--chhhhCCCCCcEEEecCCCCcccchh-hccCCcCCEEecCCC
Q 039152           94 RVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCI-LKD--MAVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLRHC  169 (259)
Q Consensus        94 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~-~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~  169 (259)
                      ..++..++.+...|..+..+++|+.|+++++. ++.  +..+..+++|+.|++++|+++.+++. +..+++|++|++++ 
T Consensus        11 ~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~-   89 (156)
T d2ifga3          11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-   89 (156)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-
T ss_pred             CeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC-
Confidence            34455555555555555555555555554432 444  23455555555555555555544322 44455555555554 


Q ss_pred             CCceeeCCC-CCCCCCcEEEeeccCC
Q 039152          170 SNLQVIPLN-KHLPNLTSLELEVNDA  194 (259)
Q Consensus       170 ~~~~~lp~~-~~l~~L~~L~l~~~~~  194 (259)
                      +.+..+|.. ....+|+.|++++|++
T Consensus        90 N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          90 NALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCCcccChhhhccccccccccCCCcc
Confidence            233334333 1122344444444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=4.1e-10  Score=82.17  Aligned_cols=104  Identities=18%  Similarity=0.198  Sum_probs=88.2

Q ss_pred             CCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCC-CCcccchh-hccCCcCCEEecCCCCCceeeCCC--CCCCCCcEE
Q 039152          113 LTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGS-SIYQLPVE-VGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSL  187 (259)
Q Consensus       113 l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~-~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L  187 (259)
                      +.....++.+++.+.. |..+..+++|+.|++.++ .++.++.. +..+++|+.|++++ +.++.++..  ..+++|++|
T Consensus         7 c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEE
T ss_pred             cCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeec-cccCCcccccccccccccce
Confidence            3445668888888877 888999999999999876 59988754 88999999999998 567777765  789999999


Q ss_pred             EeeccCCCccCCCCcCCCCCCeEEeecccc
Q 039152          188 ELEVNDANTLPRGGLFLEKPERIDLDANVR  217 (259)
Q Consensus       188 ~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~  217 (259)
                      ++++|.++.+|..+....+|+.|++.+|..
T Consensus        86 ~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          86 NLSFNALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             ECCSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             eccCCCCcccChhhhccccccccccCCCcc
Confidence            999999999999888777899999998843

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.74  E-value=1.2e-09  Score=89.87  Aligned_cols=128  Identities=13%  Similarity=0.040  Sum_probs=69.1

Q ss_pred             hCCCCccEEEcCCCCCCC-----CchhhcCCCCCcEEEecCCCCCC--ch-------------hhhCCCCCcEEEecCCC
Q 039152           88 RSMLQVRVLDLTDMNLLS-----LPSSIGLLTNLHTLCLYSCILKD--MA-------------VISDLKKLEILCLHGSS  147 (259)
Q Consensus        88 ~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~--~~-------------~~~~l~~L~~L~l~~~~  147 (259)
                      ...++|+.|++++|.+..     +...+..+++|+.|++++|.+..  ..             .....+.|+.+.+++|.
T Consensus        90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (344)
T d2ca6a1          90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  169 (344)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc
Confidence            456677777777776652     33344556677777777766532  00             11234556666666665


Q ss_pred             Cc-----ccchhhccCCcCCEEecCCCCCcee-----eCCC-CCCCCCcEEEeeccCCC-----ccCCCCcCCCCCCeEE
Q 039152          148 IY-----QLPVEVGQLTQLRSLDLRHCSNLQV-----IPLN-KHLPNLTSLELEVNDAN-----TLPRGGLFLEKPERID  211 (259)
Q Consensus       148 i~-----~lp~~i~~l~~L~~L~l~~~~~~~~-----lp~~-~~l~~L~~L~l~~~~~~-----~~p~~~~~l~~L~~L~  211 (259)
                      +.     .+...+...+.|+.|++++|.....     +... ...++|+.|++++|.++     .+...+..+++|++|+
T Consensus       170 i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~  249 (344)
T d2ca6a1         170 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  249 (344)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             ccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhh
Confidence            53     2333445556666666666432110     1111 44566666666666653     2333344566666666


Q ss_pred             eecc
Q 039152          212 LDAN  215 (259)
Q Consensus       212 l~~~  215 (259)
                      +++|
T Consensus       250 Ls~n  253 (344)
T d2ca6a1         250 LNDC  253 (344)
T ss_dssp             CTTC
T ss_pred             hhcC
Confidence            6666

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.37  E-value=9.2e-08  Score=78.23  Aligned_cols=151  Identities=16%  Similarity=0.102  Sum_probs=101.3

Q ss_pred             HhCCCCccEEEcCCCCCC-----CCchh---------hcCCCCCcEEEecCCCCCC------chhhhCCCCCcEEEecCC
Q 039152           87 LRSMLQVRVLDLTDMNLL-----SLPSS---------IGLLTNLHTLCLYSCILKD------MAVISDLKKLEILCLHGS  146 (259)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~-----~lp~~---------i~~l~~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~~  146 (259)
                      +...++|+.|++++|.+.     .+...         ....+.|+.+.+++|.+..      ...+...+.|+++++++|
T Consensus       117 l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n  196 (344)
T d2ca6a1         117 LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN  196 (344)
T ss_dssp             HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred             hcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccc
Confidence            467889999999988763     12111         2356788999999988775      244667788999999999


Q ss_pred             CCcc------cchhhccCCcCCEEecCCCCCcee----eCCC-CCCCCCcEEEeeccCCCc-----cCCCCc--CCCCCC
Q 039152          147 SIYQ------LPVEVGQLTQLRSLDLRHCSNLQV----IPLN-KHLPNLTSLELEVNDANT-----LPRGGL--FLEKPE  208 (259)
Q Consensus       147 ~i~~------lp~~i~~l~~L~~L~l~~~~~~~~----lp~~-~~l~~L~~L~l~~~~~~~-----~p~~~~--~l~~L~  208 (259)
                      ++..      +...+..+++|+.|++++|.....    +... ...++|++|++++|.++.     +...+.  ..+.|+
T Consensus       197 ~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~  276 (344)
T d2ca6a1         197 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ  276 (344)
T ss_dssp             CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCC
T ss_pred             cccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCC
Confidence            8762      334567788899999988643111    1111 567889999999998762     222222  246799


Q ss_pred             eEEeecccccCC-----cccc--cccccceeecccc
Q 039152          209 RIDLDANVRLKD-----QDTV--QLWGIEELSLAEL  237 (259)
Q Consensus       209 ~L~l~~~~~~~~-----~~~~--~l~~L~~L~l~~~  237 (259)
                      +|++++|.....     ...+  ..++|+.|+++++
T Consensus       277 ~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         277 TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             EEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             EEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCC
Confidence            999998843221     1111  1678999999887

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=2.9e-08  Score=72.50  Aligned_cols=66  Identities=27%  Similarity=0.236  Sum_probs=33.7

Q ss_pred             HHHHhCCCCccEEEcCCCCCCCCc---hhhcCCCCCcEEEecCCCCCCchh--hhCCCCCcEEEecCCCCc
Q 039152           84 QNLLRSMLQVRVLDLTDMNLLSLP---SSIGLLTNLHTLCLYSCILKDMAV--ISDLKKLEILCLHGSSIY  149 (259)
Q Consensus        84 ~~~~~~l~~L~~L~l~~~~~~~lp---~~i~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~  149 (259)
                      ..++..+++|++|++++|.++.++   ..+..+++|++|++++|.++..+.  .....+|+.+++++|.+.
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            334445666666666666665432   234455566666666666555211  112234555555555544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=2.5e-07  Score=77.70  Aligned_cols=103  Identities=20%  Similarity=0.284  Sum_probs=77.4

Q ss_pred             CccEEEcCCCCCCC--CchhhcCCCCCcEEEecCCCCCC------chhhhCCCCCcEEEecCCCCcc-----cchhhc-c
Q 039152           92 QVRVLDLTDMNLLS--LPSSIGLLTNLHTLCLYSCILKD------MAVISDLKKLEILCLHGSSIYQ-----LPVEVG-Q  157 (259)
Q Consensus        92 ~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~~~i~~-----lp~~i~-~  157 (259)
                      +|+.|++++++++.  +..-+..+++++.|+|++|.++.      ...+..+++|++|++++|.+..     +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            68899999999983  45556778999999999999885      2456789999999999998862     223322 2


Q ss_pred             CCcCCEEecCCCCCceee-----CCC-CCCCCCcEEEeeccCCC
Q 039152          158 LTQLRSLDLRHCSNLQVI-----PLN-KHLPNLTSLELEVNDAN  195 (259)
Q Consensus       158 l~~L~~L~l~~~~~~~~l-----p~~-~~l~~L~~L~l~~~~~~  195 (259)
                      ..+|++|++++|. +...     +.. ..+++|++|++++|.++
T Consensus        83 ~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          83 SCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECCCCC-ccccccccccchhhccccccccccccccch
Confidence            3579999999875 3321     111 57889999999999875

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=4.3e-07  Score=76.21  Aligned_cols=85  Identities=26%  Similarity=0.302  Sum_probs=67.3

Q ss_pred             HHhCCCCccEEEcCCCCCC-----CCchhhcCCCCCcEEEecCCCCCC--chhhh-----CCCCCcEEEecCCCCcc---
Q 039152           86 LLRSMLQVRVLDLTDMNLL-----SLPSSIGLLTNLHTLCLYSCILKD--MAVIS-----DLKKLEILCLHGSSIYQ---  150 (259)
Q Consensus        86 ~~~~l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~-----~l~~L~~L~l~~~~i~~---  150 (259)
                      ++..++++++|++++|.++     .+...+..+++|++|++++|.++.  ...+.     ...+|++|++++|.++.   
T Consensus        22 l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~  101 (460)
T d1z7xw1          22 LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC  101 (460)
T ss_dssp             HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred             HHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccc
Confidence            4567899999999999887     245567889999999999999875  23332     23579999999998863   


Q ss_pred             --cchhhccCCcCCEEecCCCC
Q 039152          151 --LPVEVGQLTQLRSLDLRHCS  170 (259)
Q Consensus       151 --lp~~i~~l~~L~~L~l~~~~  170 (259)
                        ++..+..+++|++|++++|.
T Consensus       102 ~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1         102 GVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHHHHHTTSCTTCCEEECCSSB
T ss_pred             ccccchhhcccccccccccccc
Confidence              45667889999999999864

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=4.1e-07  Score=66.14  Aligned_cols=83  Identities=20%  Similarity=0.143  Sum_probs=63.7

Q ss_pred             CchhhcCCCCCcEEEecCCCCCC----chhhhCCCCCcEEEecCCCCcccchh-hccCCcCCEEecCCCCCceeeCCC--
Q 039152          106 LPSSIGLLTNLHTLCLYSCILKD----MAVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLRHCSNLQVIPLN--  178 (259)
Q Consensus       106 lp~~i~~l~~L~~L~l~~~~~~~----~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~--  178 (259)
                      ++.....+++|++|++++|.++.    +..+..+++|++|++++|.++.+++- ......|+.+++.+|.........  
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchh
Confidence            33344578999999999999987    24467899999999999999988762 344567999999997654433221  


Q ss_pred             ------CCCCCCcEEE
Q 039152          179 ------KHLPNLTSLE  188 (259)
Q Consensus       179 ------~~l~~L~~L~  188 (259)
                            ..+|+|+.||
T Consensus       137 y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         137 YISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHTTSTTCCEET
T ss_pred             HHHHHHHHCCCCCEEC
Confidence                  6789999997

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.77  E-value=1.4e-05  Score=58.04  Aligned_cols=83  Identities=11%  Similarity=0.167  Sum_probs=53.2

Q ss_pred             HHhCCCCccEEEcCCC-CCCC-----CchhhcCCCCCcEEEecCCCCCC------chhhhCCCCCcEEEecCCCCc----
Q 039152           86 LLRSMLQVRVLDLTDM-NLLS-----LPSSIGLLTNLHTLCLYSCILKD------MAVISDLKKLEILCLHGSSIY----  149 (259)
Q Consensus        86 ~~~~l~~L~~L~l~~~-~~~~-----lp~~i~~l~~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~~~i~----  149 (259)
                      +..+.+.|+.|+++++ .++.     +-..+...++|++|++++|.+..      ...+...+.|++|++++|.+.    
T Consensus        10 l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~   89 (167)
T d1pgva_          10 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL   89 (167)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHH
Confidence            3345678888888864 4541     33345667778888888887764      134556677888888888766    


Q ss_pred             -ccchhhccCCcCCEEecCC
Q 039152          150 -QLPVEVGQLTQLRSLDLRH  168 (259)
Q Consensus       150 -~lp~~i~~l~~L~~L~l~~  168 (259)
                       .+...+...+.|++|++.+
T Consensus        90 ~~l~~aL~~n~sL~~L~l~~  109 (167)
T d1pgva_          90 ARLLRSTLVTQSIVEFKADN  109 (167)
T ss_dssp             HHHHHHTTTTCCCSEEECCC
T ss_pred             HHHHHHHHhCCcCCEEECCC
Confidence             2233444555566666655

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.42  E-value=8.4e-05  Score=53.57  Aligned_cols=83  Identities=14%  Similarity=0.166  Sum_probs=54.8

Q ss_pred             HHHhCCCCccEEEcCC-CCCC-----CCchhhcCCCCCcEEEecCCCCCC--c----hhhhCCCCCcEEEecCCCCc---
Q 039152           85 NLLRSMLQVRVLDLTD-MNLL-----SLPSSIGLLTNLHTLCLYSCILKD--M----AVISDLKKLEILCLHGSSIY---  149 (259)
Q Consensus        85 ~~~~~l~~L~~L~l~~-~~~~-----~lp~~i~~l~~L~~L~l~~~~~~~--~----~~~~~l~~L~~L~l~~~~i~---  149 (259)
                      .+..+.+.|+.|++++ +.++     .+-..+...++|+.|++++|.+..  .    ..+...+.++.++++++.+.   
T Consensus        11 ~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g   90 (166)
T d1io0a_          11 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG   90 (166)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchh
Confidence            3445678888888887 3455     134455677888888888888765  1    44556778888888887664   


Q ss_pred             --ccchhhccCCcCCEEecC
Q 039152          150 --QLPVEVGQLTQLRSLDLR  167 (259)
Q Consensus       150 --~lp~~i~~l~~L~~L~l~  167 (259)
                        .+...+...+.|+.+++.
T Consensus        91 ~~~l~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          91 ILALVEALQSNTSLIELRID  110 (166)
T ss_dssp             HHHHHHGGGGCSSCCEEECC
T ss_pred             HHHHHHHHHhCccccEEeec
Confidence              333455566666665554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.17  E-value=0.00037  Score=50.15  Aligned_cols=82  Identities=10%  Similarity=0.060  Sum_probs=62.6

Q ss_pred             HhCCCCccEEEcCCCCCC-----CCchhhcCCCCCcEEEecCCCCCC--c----hhhhCCCCCcEEEecCCCCcc-----
Q 039152           87 LRSMLQVRVLDLTDMNLL-----SLPSSIGLLTNLHTLCLYSCILKD--M----AVISDLKKLEILCLHGSSIYQ-----  150 (259)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~~~~--~----~~~~~l~~L~~L~l~~~~i~~-----  150 (259)
                      +...+.|+.|++++|.+.     .+...+...+.|+.|++++|.+..  .    ..+...+.|++|++++|++..     
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            456788999999999887     244456678899999999999886  2    456777889999999886543     


Q ss_pred             ---cchhhccCCcCCEEecCC
Q 039152          151 ---LPVEVGQLTQLRSLDLRH  168 (259)
Q Consensus       151 ---lp~~i~~l~~L~~L~l~~  168 (259)
                         +...+..-+.|+.|+++.
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHHHHhCCCccEeeCcC
Confidence               344455567788887765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.37  E-value=0.0019  Score=46.04  Aligned_cols=83  Identities=12%  Similarity=0.149  Sum_probs=63.3

Q ss_pred             HhCCCCccEEEcCCCCCCC-----CchhhcCCCCCcEEEecCCCCCC------chhhhCCCCCcEEEec--CCCCc----
Q 039152           87 LRSMLQVRVLDLTDMNLLS-----LPSSIGLLTNLHTLCLYSCILKD------MAVISDLKKLEILCLH--GSSIY----  149 (259)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~--~~~i~----  149 (259)
                      +...++|+.|++++|.+..     +-..+...+.++.+++++|.+..      ...+...+.|+.+++.  +|.+.    
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~  121 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE  121 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHH
Confidence            3578899999999998872     44456678899999999999876      2567778899987765  45554    


Q ss_pred             -ccchhhccCCcCCEEecCCC
Q 039152          150 -QLPVEVGQLTQLRSLDLRHC  169 (259)
Q Consensus       150 -~lp~~i~~l~~L~~L~l~~~  169 (259)
                       .+...+...+.|++|++..+
T Consensus       122 ~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         122 MEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHhCCCcCEEeCcCC
Confidence             45566777888898888763