Citrus Sinensis ID: 039161

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330---
Protein Sequence
GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPKAPRLASFDHDETASRFDWKMAKMGYASGLVIGLSIGYMVLSK
Secondary Structure (PSIPRED)
ccccccccEEEccccccEEEccccccccccccEEEccccccEEcccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccEEEccccccccccccHHHHccHHcccccccccEEEccccEEEEEEEEEEcccEEEEcEEcccEEEEEcccccccccccHHHHccccccccccccccccccccccccccccccHHccccccccccccHHHHcccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEHHEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccEEEEcccccccccccHHHHccccccEEEcccccccccccHHHHcccccEEEEcccccccccccHHHHcccccEEEEEcccccccccccccccccccccEEEEcccccccccccHHHHHHHHHHHHHcccccccccccHHHHHcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccccHcccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEccccccccccccccccccccccccccccccccEEEEEEEcccHHHEEEEEEEEEEcc
Coil and Loop (DISEMBL)
GSFSTELITLHLennsleghihntfanashlrsldlysnklegplprsLAKYIKLEVVNVennmisdsfpcwmgslSELKILVLRsnqfdcppcnsnitfpfqalriidlshteftgflprrifpsmeamKNVDEQGRLEYMGRAFCDESITVamkghdfqlQNIFVMFRAmdfssnrfhGEISEVLGNFKSLKVLNLshnsltgnipvsfenmtalesLDLSfnkldgripeQLLSVTALALLNLSYNrlwgriprgnqfntfqndsyignirlcgepltvrcsndglpkaprlasfdhdetasrFDWKMAKMGYASGLVIGLSIGYMVLSK
Flexible Loop (DISEMBL)
GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLprrifpsmeAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGlpkaprlasfdhDETASRFDWKMAKMGYASGLVIGLSIGYMVLSK
Low Complexity Region (SEG)
GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQllsvtalallnlsYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPKAPRLASFDHDETASRFDWKMAKMGYASGLVIGLSIGYMVLSK
Disordered region (IsUnstruct)
******LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPKAPRLASFDHDETASRFDWKMAKMGYASGLVIGLSIGYMVL**
Disordered Region (DISOPRED)
GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDE*GRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPL**************************FDWKMAKMGYASGLVIGLSIGYMVLSK
Disordered Region (DISEMBL)
GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPKAPRLASFDHDETASRFDWKMAKMGYASGLVIGLSIGYMVLSK
Disordered Region (DISPRO)
***STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRC********************SRFDWKMAKMGYASGLVIGLSIGYMVLSK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPKAPRLASFDHDETASRFDWKMAKMGYASGLVIGLSIGYMVLSK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	333	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.981	0.386	0.389	4e-54
Q9FL28	1173	LRR receptor-like serine/	no	no	0.843	0.239	0.316	5e-29
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.786	0.209	0.326	7e-28
Q00874	372	DNA-damage-repair/tolerat	no	no	0.759	0.680	0.337	2e-27
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.747	0.238	0.339	3e-26
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.723	0.236	0.316	7e-25
C0LGF5	1072	Probable LRR receptor-lik	no	no	0.741	0.230	0.314	4e-24
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.717	0.191	0.316	6e-24
Q9ZVR7	1008	Phytosulfokine receptor 1	no	no	0.621	0.205	0.341	1e-23
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.882	0.243	0.308	1e-23

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  211 bits (538), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 131/336 (38%), Positives = 191/336 (56%), Gaps = 9/336 (2%)

Query: 3   FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVEN 62
           FS  +  L+L +N+  G + + F+ A+ L SLD+  N+LEG  P+SL     LE+VNVE+
Sbjct: 490 FSGSIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVES 549

Query: 63  NMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRR 122
           N I D FP W+ SL  L +L LRSN+F  P  + + +  FQ+LRIID+SH  F+G LP  
Sbjct: 550 NKIKDIFPSWLESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPY 609

Query: 123 IFPSMEAMKNVDEQGRLEYMGR--AFCD---ESITVAMKGHDFQLQNIFVMFRAMDFSSN 177
            F + + M  + E+   +YM     + D     + +  KG D   + I   FRA+DFS N
Sbjct: 610 YFSNWKDMTTLTEEMD-QYMTEFWRYADSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGN 668

Query: 178 RFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS 237
           + +G I E LG  K L+VLNLS N+ T  IP    N+T LE+LD+S NKL G+IP+ L +
Sbjct: 669 KINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAA 728

Query: 238 VTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDG-LPKAPRLA 296
           ++ L+ +N S+N L G +PRG QF   +  S++ N  L G  L   C + G L    +L 
Sbjct: 729 LSFLSYMNFSHNLLQGPVPRGTQFQRQKCSSFLDNPGLYG--LEDICRDTGALNPTSQLP 786

Query: 297 SFDHDETASRFDWKMAKMGYASGLVIGLSIGYMVLS 332
               +   + F+W  A + Y  G++ GL IG+   S
Sbjct: 787 EDLSEAEENMFNWVAAAIAYGPGVLCGLVIGHFYTS 822

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  128 bits (322), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 145/313 (46%), Gaps = 32/313 (10%)

Query: 6   ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMI 65
           +L  L+L +N   G I    +N + L+ L +YSN LEGP+P  +     L V+++ NN  
Sbjct: 504 DLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKF 563

Query: 66  SDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRII---DLSHTEFTGFLPRR 122
           S   P     L  L  L L+ N+F     N +I    ++L ++   D+S    TG +P  
Sbjct: 564 SGQIPALFSKLESLTYLSLQGNKF-----NGSIPASLKSLSLLNTFDISDNLLTGTIPGE 618

Query: 123 IFPSMEAMK-------NV------DEQGRLEYMGRAFCDESITVAMKGHDFQ-LQNIFVM 168
           +  S++ M+       N+       E G+LE +       ++         Q  +N+F  
Sbjct: 619 LLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVF-- 676

Query: 169 FRAMDFSSNRFHGEI-SEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 227
              +DFS N   G I  EV      +  LNLS NS +G IP SF NMT L SLDLS N L
Sbjct: 677 --TLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNL 734

Query: 228 DGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCG-----EPLTV 282
            G IPE L +++ L  L L+ N L G +P    F        +GN  LCG     +P T+
Sbjct: 735 TGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSKKPLKPCTI 794

Query: 283 RCSNDGLPKAPRL 295
           +  +    K  R+
Sbjct: 795 KQKSSHFSKRTRV 807

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  124 bits (312), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 139/288 (48%), Gaps = 26/288 (9%)

Query: 4   STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
           ST L  L L  N   G I  TF   S L  LD+  N L G +P  L    KL  +++ NN
Sbjct: 599 STNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNN 658

Query: 64  MISDSFPCWMGSLSELKILVLRSNQF-DCPPCNSNITFPFQALRIIDLSHTEFTGFLPRR 122
            +S   P W+G L  L  L L SN+F    P      F    +  + L      G +P+ 
Sbjct: 659 YLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTE---IFSLTNILTLFLDGNSLNGSIPQE 715

Query: 123 IFPSMEAMKNVDEQGRLEYMGRAFCDES-ITVAMKGHDFQLQNIFVMFRAMDFSSNRFHG 181
           I             G L+ +     +E+ ++  +     +L  +F     +  S N   G
Sbjct: 716 I-------------GNLQALNALNLEENQLSGPLPSTIGKLSKLF----ELRLSRNALTG 758

Query: 182 EISEVLGNFKSLK-VLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA 240
           EI   +G  + L+  L+LS+N+ TG IP +   +  LESLDLS N+L G +P Q+  + +
Sbjct: 759 EIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKS 818

Query: 241 LALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDG 288
           L  LNLSYN L G++ +  QF+ +Q D+++GN  LCG PL+  C+  G
Sbjct: 819 LGYLNLSYNNLEGKLKK--QFSRWQADAFVGNAGLCGSPLS-HCNRAG 863

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q00874|DR100_ARATH DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2

 Score =  123 bits (309), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/290 (33%), Positives = 134/290 (46%), Gaps = 37/290 (12%)

Query: 5   TELITLHLEN-NSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
           T L +L L +   + G I     + + LR LDL  NK+ G +P  + K  KL V+N+  N
Sbjct: 110 TALTSLVLADWKGITGEIPPCITSLASLRILDLAGNKITGEIPAEIGKLSKLAVLNLAEN 169

Query: 64  MISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIID---LSHTEFTGFLP 120
            +S   P  + SL ELK L L  N          I   F +L+++    L   E TG +P
Sbjct: 170 QMSGEIPASLTSLIELKHLELTENGI-----TGVIPADFGSLKMLSRVLLGRNELTGSIP 224

Query: 121 RRIFPSMEAMKNVD------EQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDF 174
             I   ME + ++D      E    E+MG           MK           +   ++ 
Sbjct: 225 ESI-SGMERLADLDLSKNHIEGPIPEWMGN----------MK-----------VLSLLNL 262

Query: 175 SSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQ 234
             N   G I   L +   L V NLS N+L G IP  F + T L SLDLS N L GRIP+ 
Sbjct: 263 DCNSLTGPIPGSLLSNSGLDVANLSRNALEGTIPDVFGSKTYLVSLDLSHNSLSGRIPDS 322

Query: 235 LLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRC 284
           L S   +  L++S+N+L GRIP G  F+  +  S+  N  LCG PLT  C
Sbjct: 323 LSSAKFVGHLDISHNKLCGRIPTGFPFDHLEATSFSDNQCLCGGPLTTSC 372

This protein is able to complement bacterial recA mutations, but its native function in the plant is not known.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  119 bits (298), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/265 (33%), Positives = 129/265 (48%), Gaps = 16/265 (6%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
           T L TL L  N L G I +T  N   L  L LY N+L G +P  L +   +  + +  N 
Sbjct: 286 TALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELGEMESMIDLEISENK 345

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFD--CPPCNSNITFPFQALRIIDLSHTEFTGFLPRR 122
           ++   P   G L+ L+ L LR NQ     PP  +N T     L ++ L    FTGFLP  
Sbjct: 346 LTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANST----ELTVLQLDTNNFTGFLPDT 401

Query: 123 IF--PSMEAMKNVDE--QGRLEYMGRAFCDESITVAMKGHDF-----QLQNIFVMFRAMD 173
           I     +E +   D   +G +    R  C   I V  KG+ F     +   ++     +D
Sbjct: 402 ICRGGKLENLTLDDNHFEGPVPKSLRD-CKSLIRVRFKGNSFSGDISEAFGVYPTLNFID 460

Query: 174 FSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 233
            S+N FHG++S      + L    LS+NS+TG IP    NMT L  LDLS N++ G +PE
Sbjct: 461 LSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPE 520

Query: 234 QLLSVTALALLNLSYNRLWGRIPRG 258
            + ++  ++ L L+ NRL G+IP G
Sbjct: 521 SISNINRISKLQLNGNRLSGKIPSG 545

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score =  114 bits (286), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 88/278 (31%), Positives = 137/278 (49%), Gaps = 37/278 (13%)

Query: 3   FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVEN 62
             T ++TL+ +   L       F N   L+ L + S +L G +P+ L+    L+++++  
Sbjct: 402 LKTLVLTLNFQKEELPSVPSLQFKN---LKVLIIASCQLRGTVPQWLSNSPSLQLLDLSW 458

Query: 63  NMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRR 122
           N +S + P W+GSL+ L  L                          DLS+  F G +P  
Sbjct: 459 NQLSGTIPPWLGSLNSLFYL--------------------------DLSNNTFIGEIPHS 492

Query: 123 I--FPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFH 180
           +    S+ + +N  E+   ++    F  +  T A  G  +   + F     +D S N  +
Sbjct: 493 LTSLQSLVSKENAVEEPSPDF---PFFKKKNTNA-GGLQYNQPSSFPPM--IDLSYNSLN 546

Query: 181 GEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA 240
           G I    G+ + L VLNL +N+L+GNIP +   MT+LE LDLS N L G IP  L+ ++ 
Sbjct: 547 GSIWPEFGDLRQLHVLNLKNNNLSGNIPANLSGMTSLEVLDLSHNNLSGNIPPSLVKLSF 606

Query: 241 LALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGE 278
           L+  +++YN+L G IP G QF TF N S+ GN  LCGE
Sbjct: 607 LSTFSVAYNKLSGPIPTGVQFQTFPNSSFEGNQGLCGE 644

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGF5|Y1341_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2

 Score =  112 bits (280), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 137/299 (45%), Gaps = 52/299 (17%)

Query: 7   LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMIS 66
           L+ L +  N L G I        +L  LDLY N   G LP  ++    LE+++V NN I+
Sbjct: 454 LVRLRVGENQLSGQIPKEIGELQNLVFLDLYMNHFSGGLPYEISNITVLELLDVHNNYIT 513

Query: 67  DSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPS 126
              P  +G+L  L+ L                          DLS   FTG +P      
Sbjct: 514 GDIPAQLGNLVNLEQL--------------------------DLSRNSFTGNIPLSF--- 544

Query: 127 MEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQ-LQNIFVMFRAMDFSSNRFHGEISE 185
                     G L Y+ +   + ++         + LQ + ++    D S N   GEI +
Sbjct: 545 ----------GNLSYLNKLILNNNLLTGQIPKSIKNLQKLTLL----DLSYNSLSGEIPQ 590

Query: 186 VLGNFKSLKV-LNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL 244
            LG   SL + L+LS+N+ TGNIP +F ++T L+SLDLS N L G I + L S+T+LA L
Sbjct: 591 ELGQVTSLTINLDLSYNTFTGNIPETFSDLTQLQSLDLSSNSLHGDI-KVLGSLTSLASL 649

Query: 245 NLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCS-----NDGLPKAPRLASF 298
           N+S N   G IP    F T    SY+ N  LC     + CS     N+G+ K+P++ + 
Sbjct: 650 NISCNNFSGPIPSTPFFKTISTTSYLQNTNLCHSLDGITCSSHTGQNNGV-KSPKIVAL 707

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  112 bits (279), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 137/303 (45%), Gaps = 64/303 (21%)

Query: 4   STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
           S  L  L L  N L G I  T      L  LD+ SN L G +P  L    KL  +++ NN
Sbjct: 598 SQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNN 657

Query: 64  MISDSFPCWMGSLSELKILVLRSNQF---------DCPPC-------NS-NITFPFQ--- 103
            +S   P W+G LS+L  L L SNQF         +C          NS N + P +   
Sbjct: 658 FLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGN 717

Query: 104 --ALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQ 161
             AL +++L   +F+G LP       +AM  + +   L     +   E I V +     Q
Sbjct: 718 LGALNVLNLDKNQFSGSLP-------QAMGKLSKLYELRLSRNSLTGE-IPVEIG----Q 765

Query: 162 LQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLD 221
           LQ+   +  A+D S N F G+I   +G    L+ L+LSHN LTG +P S  +M +L  L+
Sbjct: 766 LQD---LQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLN 822

Query: 222 LSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLT 281
           +SFN L G++ +                          QF+ +  DS++GN  LCG PL+
Sbjct: 823 VSFNNLGGKLKK--------------------------QFSRWPADSFLGNTGLCGSPLS 856

Query: 282 VRC 284
            RC
Sbjct: 857 -RC 858

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZVR7|PSKR1_ARATH Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4

 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/240 (34%), Positives = 119/240 (49%), Gaps = 33/240 (13%)

Query: 52  YIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLS 111
           + KL+V+ V N  ++ S P W+ S +EL++L L  N+        +    F+AL  +DLS
Sbjct: 414 FEKLKVLVVANCRLTGSMPRWLSSSNELQLLDLSWNRLT--GAIPSWIGDFKALFYLDLS 471

Query: 112 HTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDF----------- 160
           +  FTG +P+ +              +LE    +    +I+V     DF           
Sbjct: 472 NNSFTGEIPKSL-------------TKLE----SLTSRNISVNEPSPDFPFFMKRNESAR 514

Query: 161 --QLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALE 218
             Q   IF     ++   N   G I E  GN K L V +L  N+L+G+IP S   MT+LE
Sbjct: 515 ALQYNQIFGFPPTIELGHNNLSGPIWEEFGNLKKLHVFDLKWNALSGSIPSSLSGMTSLE 574

Query: 219 SLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGE 278
           +LDLS N+L G IP  L  ++ L+  +++YN L G IP G QF TF N S+  N  LCGE
Sbjct: 575 ALDLSNNRLSGSIPVSLQQLSFLSKFSVAYNNLSGVIPSGGQFQTFPNSSFESN-HLCGE 633

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis, somatic embryogenesis, cellular proliferation and plant growth. Not involved in PSY perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  110 bits (275), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 146/337 (43%), Gaps = 43/337 (12%)

Query: 1   GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNV 60
           GS S +L  L L  N L G I         L +L L  N L GP+P SL+   KL  +++
Sbjct: 472 GSLS-KLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISL 530

Query: 61  ENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPF---QALRIIDLSHTEFTG 117
            NN +S   P  +G LS L IL L +N       + NI       Q+L  +DL+     G
Sbjct: 531 SNNQLSGEIPASLGRLSNLAILKLGNNSI-----SGNIPAELGNCQSLIWLDLNTNFLNG 585

Query: 118 FLPRRIFPSMEAMKNVDEQG-RLEYM---GRAFCDESITVAMKGHDFQLQ---------- 163
            +P  +F     +      G R  Y+   G   C  +  +   G   Q Q          
Sbjct: 586 SIPPPLFKQSGNIAVALLTGKRYVYIKNDGSKECHGAGNLLEFGGIRQEQLDRISTRHPC 645

Query: 164 NIFVMFRA--------------MDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPV 209
           N   ++R               +D S N+  G I + LG    L +LNL HN L+G IP 
Sbjct: 646 NFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQ 705

Query: 210 SFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSY 269
               +  +  LDLS+N+ +G IP  L S+T L  ++LS N L G IP    F+TF  D  
Sbjct: 706 QLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESAPFDTFP-DYR 764

Query: 270 IGNIRLCGEPLTVRCSNDGLPKAPRLASFDHDETASR 306
             N  LCG PL + CS+      P+  +  H ++  R
Sbjct: 765 FANNSLCGYPLPIPCSS-----GPKSDANQHQKSHRR 796

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	333
224116970	921	predicted protein [Populus trichocarpa]	0.990	0.358	0.508	3e-87
296082718	745	unnamed protein product [Vitis vinifera]	0.978	0.437	0.492	7e-80
225462116	1001	PREDICTED: receptor-like protein 12-like	0.978	0.325	0.492	7e-80
359493539	1001	PREDICTED: receptor-like protein 12-like	0.981	0.326	0.504	2e-79
359493544	978	PREDICTED: receptor-like protein 12-like	0.981	0.334	0.483	3e-78
147826872	751	hypothetical protein VITISV_000530 [Viti	0.936	0.415	0.495	2e-77
359493541	383	PREDICTED: receptor-like protein 12-like	0.981	0.853	0.483	4e-77
359493479	814	PREDICTED: receptor-like protein 12-like	0.978	0.400	0.493	4e-77
296089526	616	unnamed protein product [Vitis vinifera]	0.978	0.529	0.493	9e-77
359493546	985	PREDICTED: LRR receptor-like serine/thre	0.981	0.331	0.489	2e-76

>gi|224116970|ref|XP_002331797.1| predicted protein [Populus trichocarpa] gi|222874493|gb|EEF11624.1| predicted protein [Populus trichocarpa]

 Score =  328 bits (840), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 170/334 (50%), Positives = 227/334 (67%), Gaps = 4/334 (1%)

Query: 1   GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNV 60
           G+FSTEL  L+L +NS  G I  +F   + +RSLDL  N+LEG LP SLA    LEV+++
Sbjct: 563 GNFSTELSVLNLRSNSFHGTIPGSFTEGNKIRSLDLNGNELEGSLPLSLANCKMLEVLDL 622

Query: 61  ENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLP 120
            NN I+DSFP W+ +L +L++LVLRSN+      N     PF +LRIIDLSH EF G LP
Sbjct: 623 GNNYINDSFPLWLQTLPKLQVLVLRSNRLHGSIGNPTAISPFSSLRIIDLSHNEFIGLLP 682

Query: 121 RRIFPSMEAMKNVDEQGRL--EYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNR 178
            +   + +AMK VD + +   +Y+G  +  +SI + MKG +  ++ I  +F  +D SSNR
Sbjct: 683 TQYIANFQAMKKVDGEVKATPKYIGEIYYQDSIVLTMKGTEIPMERILTIFTTIDLSSNR 742

Query: 179 FHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSV 238
           F G+I + +G   SL VLN+S NS+TG IP S  N+TALESLDLS N L G IP QL  +
Sbjct: 743 FEGQIPKEVGLLSSLIVLNISRNSVTGQIPSSLGNLTALESLDLSSNGLGGGIPSQLTRL 802

Query: 239 TALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPKAPRLASF 298
           T LA+LNLSYN+L G IP G+QF+TFQNDSY+GN+RLCG PL+V+CS D  P+ P     
Sbjct: 803 TFLAVLNLSYNQLVGPIPHGSQFDTFQNDSYVGNLRLCGFPLSVKCSGDVAPQPPPFQ-- 860

Query: 299 DHDETASRFDWKMAKMGYASGLVIGLSIGYMVLS 332
           + ++ AS F+WK A +GY  GLVIGLS+GY+V +
Sbjct: 861 EKEDPASLFNWKFAMIGYGCGLVIGLSVGYIVFT 894

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082718|emb|CBI21723.3| unnamed protein product [Vitis vinifera]

 Score =  303 bits (776), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 163/331 (49%), Positives = 218/331 (65%), Gaps = 5/331 (1%)

Query: 1   GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNV 60
           G+FS  L  L L  N L G+I  TF+  + +R+L    N+LEGPLPRSL    +L+V+++
Sbjct: 383 GNFSESLSVLDLRMNQLHGNIPETFSKGNFIRNLGFNGNQLEGPLPRSLINCRRLQVLDL 442

Query: 61  ENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLP 120
            NN I+D+FP W+ +L EL++L+LRSN+F      SN  FPF  LRI+DLS  +F+G LP
Sbjct: 443 GNNRINDTFPYWLETLPELQVLILRSNRFHGHISGSNFQFPFPKLRIMDLSRNDFSGSLP 502

Query: 121 RRIFPSMEAMKNVDE-QGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRF 179
                + +AM NV E + +L+YMG  +  +SI   +KG DF+   I   F  +D SSNRF
Sbjct: 503 EMYLKNFKAMMNVTEDKMKLKYMGEYYYRDSIMGTIKGFDFEFV-ILSTFTTIDLSSNRF 561

Query: 180 HGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT 239
            GEI + +G+  SL+ LNLSHN+LTG+IP S  N+  LESLDLS NKL GRIP +L S+T
Sbjct: 562 QGEILDFIGSLSSLRELNLSHNNLTGHIPSSLGNLMVLESLDLSSNKLSGRIPRELTSLT 621

Query: 240 ALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPKAPRLASFD 299
            L +LNLS N L G IPRGNQF+TF N+SY GNI LCG PL+ +C  D  P+ P+    +
Sbjct: 622 FLEVLNLSKNHLTGVIPRGNQFDTFANNSYSGNIGLCGLPLSKKCVVDEAPQPPKEEEVE 681

Query: 300 HDETASRFDWKMAKMGYASGLVIGLSIGYMV 330
            D   + FDWK+  MGY  GLV+GL +G +V
Sbjct: 682 SD---TGFDWKVILMGYGCGLVVGLFMGCLV 709

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462116|ref|XP_002263233.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  303 bits (776), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 163/331 (49%), Positives = 218/331 (65%), Gaps = 5/331 (1%)

Query: 1   GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNV 60
           G+FS  L  L L  N L G+I  TF+  + +R+L    N+LEGPLPRSL    +L+V+++
Sbjct: 639 GNFSESLSVLDLRMNQLHGNIPETFSKGNFIRNLGFNGNQLEGPLPRSLINCRRLQVLDL 698

Query: 61  ENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLP 120
            NN I+D+FP W+ +L EL++L+LRSN+F      SN  FPF  LRI+DLS  +F+G LP
Sbjct: 699 GNNRINDTFPYWLETLPELQVLILRSNRFHGHISGSNFQFPFPKLRIMDLSRNDFSGSLP 758

Query: 121 RRIFPSMEAMKNVDE-QGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRF 179
                + +AM NV E + +L+YMG  +  +SI   +KG DF+   I   F  +D SSNRF
Sbjct: 759 EMYLKNFKAMMNVTEDKMKLKYMGEYYYRDSIMGTIKGFDFEFV-ILSTFTTIDLSSNRF 817

Query: 180 HGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT 239
            GEI + +G+  SL+ LNLSHN+LTG+IP S  N+  LESLDLS NKL GRIP +L S+T
Sbjct: 818 QGEILDFIGSLSSLRELNLSHNNLTGHIPSSLGNLMVLESLDLSSNKLSGRIPRELTSLT 877

Query: 240 ALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPKAPRLASFD 299
            L +LNLS N L G IPRGNQF+TF N+SY GNI LCG PL+ +C  D  P+ P+    +
Sbjct: 878 FLEVLNLSKNHLTGVIPRGNQFDTFANNSYSGNIGLCGLPLSKKCVVDEAPQPPKEEEVE 937

Query: 300 HDETASRFDWKMAKMGYASGLVIGLSIGYMV 330
            D   + FDWK+  MGY  GLV+GL +G +V
Sbjct: 938 SD---TGFDWKVILMGYGCGLVVGLFMGCLV 965

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493539|ref|XP_002267388.2| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 167/331 (50%), Positives = 215/331 (64%), Gaps = 4/331 (1%)

Query: 1   GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNV 60
           G+FS +L  L+L  N   G I  TF   + +R+LD   N+LEG +PRSL  Y KLEV+++
Sbjct: 638 GNFSKDLSVLNLRRNRFHGTIPQTFLKGNAIRNLDFNDNQLEGLVPRSLIIYRKLEVLDL 697

Query: 61  ENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLP 120
            NN I+D+FP W+ +L EL++LVLRSN F      S I  PF +LRIIDL+H +F G LP
Sbjct: 698 GNNKINDTFPHWLRTLPELQVLVLRSNSFHGHIGFSKIKSPFMSLRIIDLAHNDFEGDLP 757

Query: 121 RRIFPSMEAMKNVDEQGRL-EYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRF 179
                S++A+ N+DE     +YMG  +  +SITV  KG D +L  I   F  +D SSN+F
Sbjct: 758 EMYLRSLKAIMNIDEGNMARKYMGEYYYQDSITVTTKGLDVELVKILNTFTTVDLSSNKF 817

Query: 180 HGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT 239
            GEI + +GN  SL+ LNLSHN+LTG IP SF N+ +LESLDLS N+L G IP+QL S+T
Sbjct: 818 QGEIPKSIGNLNSLRGLNLSHNNLTGLIPSSFGNLKSLESLDLSSNELIGSIPQQLTSLT 877

Query: 240 ALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPKAPRLASFD 299
            L +LNLS N L G IPRGNQF+TF NDSY  N  LCG PL+ +C  D  P+  + A   
Sbjct: 878 FLEVLNLSQNHLTGFIPRGNQFDTFGNDSYNENSGLCGFPLSKKCIADETPEPSKEADAK 937

Query: 300 HDETASRFDWKMAKMGYASGLVIGLSIGYMV 330
            D     FDWK+  MGY  GLVIGLS+G +V
Sbjct: 938 FD---GGFDWKITLMGYGCGLVIGLSLGCLV 965

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493544|ref|XP_002267509.2| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  298 bits (762), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 160/331 (48%), Positives = 215/331 (64%), Gaps = 4/331 (1%)

Query: 1   GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNV 60
           G+FS +L  L+L  N   G I  TF   + +R+LD   N+LEGP+PRSL    KLEV+++
Sbjct: 615 GNFSKDLFVLNLRRNQFHGIIPQTFLKGNAIRNLDFNDNQLEGPVPRSLIICRKLEVLDL 674

Query: 61  ENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLP 120
            NN I+D+FP W+G+L EL++LVLRSN F      S I  PF +LRIIDL+H +F G LP
Sbjct: 675 GNNKINDTFPHWLGTLPELQVLVLRSNSFHGHIGRSKIKSPFMSLRIIDLAHNDFEGDLP 734

Query: 121 RRIFPSMEAMKNVDEQGRL-EYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRF 179
                S++A+ N+DE     +YMG  +  +SI V +K  + +   I   F  +D SSN+F
Sbjct: 735 EMYLRSLKAIMNIDEGNMTRKYMGEEYYQDSIVVTIKRLEIEFVKILNTFTTIDLSSNKF 794

Query: 180 HGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT 239
            GEI + +GN  SL+ LNLSHN+L G+IP SF N+  LESLDLS NKL GRIP++L S+T
Sbjct: 795 QGEIPKSIGNLNSLRGLNLSHNNLAGHIPSSFGNLKLLESLDLSSNKLIGRIPQELTSLT 854

Query: 240 ALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPKAPRLASFD 299
            L +LNLS N L G IP+GNQF+TF NDSY  N  LCG PL+ +C  D  P++ +    +
Sbjct: 855 FLEVLNLSQNHLTGFIPQGNQFDTFGNDSYNENSGLCGFPLSKKCIIDETPESSKETDAE 914

Query: 300 HDETASRFDWKMAKMGYASGLVIGLSIGYMV 330
            D     FDWK+  MGY  GL+IGLS+G ++
Sbjct: 915 FD---GGFDWKITLMGYGCGLIIGLSLGCLI 942

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147826872|emb|CAN73268.1| hypothetical protein VITISV_000530 [Vitis vinifera]

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 157/317 (49%), Positives = 211/317 (66%), Gaps = 5/317 (1%)

Query: 15  NSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMG 74
           N L G+I  TF+  + +R+L    N+LEGPLPRSL    +L+V+++ NN I+D+FP W+ 
Sbjct: 403 NQLHGNIPETFSKGNFIRNLGFNGNQLEGPLPRSLINCRRLQVLDLGNNRINDTFPYWLE 462

Query: 75  SLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVD 134
           +L EL++L+LRSN+F      SN  FPF  LRI+DLS  +F+G LP     + +AM NV 
Sbjct: 463 TLPELQVLILRSNRFHGHISGSNFQFPFPKLRIMDLSRNDFSGSLPEMYLKNFKAMMNVT 522

Query: 135 E-QGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSL 193
           E + +L+YMG  +  +SI   +KG DF+   I   F  +D SSNRF GEI + +G+  SL
Sbjct: 523 EDKMKLKYMGEYYYRDSIMGTIKGFDFEFV-ILSTFTTIDLSSNRFQGEILDFIGSLSSL 581

Query: 194 KVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG 253
           + LNLSHN+LTG+IP S  N+  LESLDLS NKL GRIP +L S+T L +LNLS N L G
Sbjct: 582 RELNLSHNNLTGHIPSSLGNLMVLESLDLSSNKLSGRIPRELTSLTFLEVLNLSKNHLTG 641

Query: 254 RIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPKAPRLASFDHDETASRFDWKMAK 313
            IPRGNQF+TF N+SY GNI LCG PL+ +C  D  P+ P+    + D   + FDWK+  
Sbjct: 642 VIPRGNQFDTFANNSYSGNIGLCGFPLSKKCVVDEAPQPPKEEEVESD---TGFDWKVIL 698

Query: 314 MGYASGLVIGLSIGYMV 330
           MGY  GLV+GL +G +V
Sbjct: 699 MGYGCGLVVGLFMGCLV 715

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493541|ref|XP_003634623.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  294 bits (752), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 160/331 (48%), Positives = 215/331 (64%), Gaps = 4/331 (1%)

Query: 1   GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNV 60
           G+FS +L  L+L  N   G I  TF   + +R+LD   N+LEG +PRSL    KLEV+++
Sbjct: 20  GNFSKDLSVLNLRRNRFHGIIPQTFLKDNAIRNLDFNDNQLEGSVPRSLIICRKLEVLDL 79

Query: 61  ENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLP 120
            NN I+D+FP W+G+L EL++LVLRSN F      S I  PF +LRIIDL+H +F G LP
Sbjct: 80  GNNKINDTFPHWLGTLPELQVLVLRSNSFHGHIGCSKIKSPFMSLRIIDLAHNDFEGDLP 139

Query: 121 RRIFPSMEAMKNVDEQGRL-EYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRF 179
                S++A  NVDE+    +YMG ++  +S+ V +KG + +   I   F  +D SSN+F
Sbjct: 140 EMYLRSLKATMNVDERNMTRKYMGDSYYQDSVMVTIKGLEIEFVKILNTFTTIDLSSNKF 199

Query: 180 HGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT 239
            GEI + +GN  SL+ LNLSHN+L G+IP SF N+  LESLDLS NKL G IP++L S+T
Sbjct: 200 QGEIPKSIGNLNSLRGLNLSHNNLAGHIPSSFGNLKLLESLDLSSNKLIGIIPQELTSLT 259

Query: 240 ALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPKAPRLASFD 299
            L +LNLS N L G IPRGNQF+TF NDSY  N  LCG PL+ +C  D  P++ +    +
Sbjct: 260 FLEVLNLSQNHLTGFIPRGNQFDTFGNDSYNENSGLCGFPLSKKCIIDETPESSKETDAE 319

Query: 300 HDETASRFDWKMAKMGYASGLVIGLSIGYMV 330
            D     FDWK+  MGY  GL+IGLS+G ++
Sbjct: 320 FD---GGFDWKITLMGYGCGLIIGLSLGCLI 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493479|ref|XP_003634609.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  294 bits (752), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 164/332 (49%), Positives = 217/332 (65%), Gaps = 6/332 (1%)

Query: 1   GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNV 60
           G+FS +L  L+L+ N   G I  TF   + +R+LD   N+LEG +PRSL    +LEV+++
Sbjct: 451 GNFSKDLSVLNLQGNRFHGTIPQTFLKGNVIRNLDFNGNQLEGLVPRSLIICRELEVLDL 510

Query: 61  ENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLP 120
            NN I+D+FP W+ +L +L++LVLRSN F      S I  PF +LRIIDL+  +F G LP
Sbjct: 511 GNNKINDTFPHWLETLPKLQVLVLRSNSFHGHIGFSKIKSPFMSLRIIDLARNDFEGDLP 570

Query: 121 RRIFPSMEAMKNVDEQGRL--EYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNR 178
                S++A+ NVDE G++  +YMG  +  +SI V +KG + +L  I   F  +D SSN+
Sbjct: 571 EMYLRSLKAIMNVDE-GKMTRKYMGDHYYQDSIMVTIKGLEIELVKILNTFTTIDLSSNK 629

Query: 179 FHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSV 238
           F GEI E +GN  SL+ LNLSHN+L G+IP SF N+  LESLDLS NKL GRIP++L S+
Sbjct: 630 FQGEIPESIGNLNSLRELNLSHNNLVGHIPSSFGNLKLLESLDLSSNKLIGRIPQELTSL 689

Query: 239 TALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPKAPRLASF 298
           T L +LNLS N L G IPRGNQF TF NDSY GN  LCG PL+ +C+ D   +  + A  
Sbjct: 690 TFLEVLNLSQNHLTGFIPRGNQFETFGNDSYNGNSGLCGFPLSKKCTTDETLEPSKEAD- 748

Query: 299 DHDETASRFDWKMAKMGYASGLVIGLSIGYMV 330
              E  S FDWK+  MGY  GLVIGLS+G  +
Sbjct: 749 --AEFESGFDWKITLMGYGCGLVIGLSLGCFI 778

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089526|emb|CBI39345.3| unnamed protein product [Vitis vinifera]

 Score =  293 bits (749), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 164/332 (49%), Positives = 217/332 (65%), Gaps = 6/332 (1%)

Query: 1   GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNV 60
           G+FS +L  L+L+ N   G I  TF   + +R+LD   N+LEG +PRSL    +LEV+++
Sbjct: 253 GNFSKDLSVLNLQGNRFHGTIPQTFLKGNVIRNLDFNGNQLEGLVPRSLIICRELEVLDL 312

Query: 61  ENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLP 120
            NN I+D+FP W+ +L +L++LVLRSN F      S I  PF +LRIIDL+  +F G LP
Sbjct: 313 GNNKINDTFPHWLETLPKLQVLVLRSNSFHGHIGFSKIKSPFMSLRIIDLARNDFEGDLP 372

Query: 121 RRIFPSMEAMKNVDEQGRL--EYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNR 178
                S++A+ NVDE G++  +YMG  +  +SI V +KG + +L  I   F  +D SSN+
Sbjct: 373 EMYLRSLKAIMNVDE-GKMTRKYMGDHYYQDSIMVTIKGLEIELVKILNTFTTIDLSSNK 431

Query: 179 FHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSV 238
           F GEI E +GN  SL+ LNLSHN+L G+IP SF N+  LESLDLS NKL GRIP++L S+
Sbjct: 432 FQGEIPESIGNLNSLRELNLSHNNLVGHIPSSFGNLKLLESLDLSSNKLIGRIPQELTSL 491

Query: 239 TALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPKAPRLASF 298
           T L +LNLS N L G IPRGNQF TF NDSY GN  LCG PL+ +C+ D   +  + A  
Sbjct: 492 TFLEVLNLSQNHLTGFIPRGNQFETFGNDSYNGNSGLCGFPLSKKCTTDETLEPSKEAD- 550

Query: 299 DHDETASRFDWKMAKMGYASGLVIGLSIGYMV 330
              E  S FDWK+  MGY  GLVIGLS+G  +
Sbjct: 551 --AEFESGFDWKITLMGYGCGLVIGLSLGCFI 580

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493546|ref|XP_002267585.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 162/331 (48%), Positives = 214/331 (64%), Gaps = 4/331 (1%)

Query: 1   GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNV 60
           G+FS  L  L+L  N   G I  TF   + +R+LD   N+LEG LPRSL    KLEV+++
Sbjct: 622 GNFSKYLSVLNLGRNRFHGIIPQTFLKGNAIRNLDFNGNQLEGLLPRSLIICRKLEVLDL 681

Query: 61  ENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLP 120
            NN I+D+FP W+G+L EL++LVLRSN F      S I  PF +LRIIDL++ +F G LP
Sbjct: 682 GNNKINDTFPHWLGTLPELQVLVLRSNSFHGHIGCSKIKSPFMSLRIIDLAYNDFEGDLP 741

Query: 121 RRIFPSMEAMKNVDEQGRL-EYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRF 179
                S++A  NVDE     +YMG ++  +S+ V +KG + +   I   F  +D SSN+F
Sbjct: 742 EMYLRSLKATMNVDEGNMTRKYMGDSYYQDSVMVTIKGLEIEFVKILNTFTTIDLSSNKF 801

Query: 180 HGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT 239
            GEI + +GN  SL+ LNLSHNSL G+IP SF+N+  LESLDLS NKL G IP++L S+T
Sbjct: 802 QGEIPKSIGNLNSLRGLNLSHNSLAGHIPSSFKNLKLLESLDLSSNKLIGSIPQELTSLT 861

Query: 240 ALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPKAPRLASFD 299
            L +LNLS N L G IPRGNQF+TF NDSY  N  LCG PL+ +C  D   ++ + A   
Sbjct: 862 FLEVLNLSENHLTGFIPRGNQFDTFGNDSYSENSGLCGFPLSKKCITDEASESSKEAD-- 919

Query: 300 HDETASRFDWKMAKMGYASGLVIGLSIGYMV 330
            +E    FDWK+  MGY  GLVIGLS+G ++
Sbjct: 920 -EEFDGGFDWKITLMGYGCGLVIGLSLGCLI 949

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	333
TAIR|locus:2825389	784	RLP11 "AT1G71390" [Arabidopsis	0.969	0.411	0.404	1.1e-55
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.966	0.368	0.395	1.9e-55
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.960	0.339	0.395	1.5e-54
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.972	0.325	0.396	2.5e-54
TAIR|locus:2046397	589	RLP22 "receptor like protein 2	0.945	0.534	0.381	1.1e-53
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.975	0.363	0.389	2.2e-53
TAIR|locus:2090754	711	RLP43 "receptor like protein 4	0.975	0.457	0.389	3e-53
TAIR|locus:5019474716	543	AT2G15042 [Arabidopsis thalian	0.969	0.594	0.395	1.3e-52
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.972	0.338	0.385	5.2e-52
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.966	0.398	0.371	7.7e-52

TAIR|locus:2825389 RLP11 "AT1G71390" [Arabidopsis thaliana (taxid:3702)]

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 134/331 (40%), Positives = 184/331 (55%)

Query:     7 LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMIS 66
             L  L L NN   G + + FAN ++L+SLD+  N+LEG  P+SL     L  VNVE+N I 
Sbjct:   435 LTGLILGNNKFSGTLPDIFANNTNLQSLDVSGNQLEGKFPKSLINCKGLHFVNVESNKIK 494

Query:    67 DSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPS 126
             D+FP W+GSL  L++L+LRSN F  P  + +++  FQ LRIID+SH  F+G LP   F S
Sbjct:   495 DTFPSWLGSLPSLQVLILRSNDFYGPLYHPSMSIGFQGLRIIDISHNGFSGVLPPNFFSS 554

Query:   127 MEAMKNVDEQGRLEYM----GRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGE 182
                M  +   G  EY+      +    S+ +  KG +   + I   FRA+DFS NR +GE
Sbjct:   555 WREMITL-VHGSYEYIEDIQNYSLIYRSMEMVNKGVEMSFERIRQDFRAIDFSENRIYGE 613

Query:   183 ISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQXXXXXXXX 242
             I E +G  + L++LNLS N+ T +IP  +EN+T LE+LDLS NKL G+IP+         
Sbjct:   614 IPESIGCLEELRLLNLSGNAFTSDIPRVWENLTKLETLDLSRNKLSGQIPQDLGKLSFLS 673

Query:   243 XXXXXYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPKAPRLASFDH-D 301
                  +NRL G +PRG QF   +  S++ N RL G  L   C    +P      S D  D
Sbjct:   674 YMNFSHNRLQGPVPRGTQFQRQRCSSFLDNHRLYG--LEDICEETHVPNPTSQPSEDLLD 731

Query:   302 ETASRFDWKMAKMGYASGLVIGLSIGYMVLS 332
             E    F+W  A + Y  G+  GL IGY+  S
Sbjct:   732 EEEKMFNWVAAAIAYGPGVFCGLVIGYIFTS 762

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 576 (207.8 bits), Expect = 1.9e-55, P = 1.9e-55
 Identities = 133/336 (39%), Positives = 192/336 (57%)

Query:     1 GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNV 60
             G F + L  L+L  N L G +  T   +  LRSLD+  N+LEG LPRSL  +  LEV+NV
Sbjct:   524 GKFKSTLSDLNLRRNRLSGSLPKTIIKS--LRSLDVSHNELEGKLPRSLIHFSTLEVLNV 581

Query:    61 ENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLP 120
             E+N I+D+FP W+ SL +L++LVLRSN F      +   FP   LRIID+S   F G LP
Sbjct:   582 ESNRINDTFPFWLSSLKKLQVLVLRSNAFHGRIHKTR--FP--KLRIIDISRNHFNGTLP 637

Query:   121 RRIFPSMEAMKNVDE-QGRL--EYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSN 177
                F     M ++++ + R   +YMG  +  +S+ +  KG + +L  I  ++ A+DFS N
Sbjct:   638 SDCFVEWTGMHSLEKNEDRFNEKYMGSGYYHDSMVLMNKGLEMELVRILKIYTALDFSGN 697

Query:   178 RFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQXXX 237
             +F GEI   +G  K L +LNLS N  TG+IP S  N+  LESLD+S NKL G IP++   
Sbjct:   698 KFEGEIPRSIGLLKELHILNLSSNGFTGHIPSSMGNLRELESLDVSRNKLSGEIPQELGN 757

Query:   238 XXXXXXXXXXYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLT-VRCSNDGLPKAPRLA 296
                       +N+L G++P G QF T    S+  N+ LCG PL   R  ++  P      
Sbjct:   758 LSYLAYMNFSHNQLVGQVPGGTQFRTQSASSFEENLGLCGRPLEECRVVHEPTPSGES-E 816

Query:   297 SFDHDETASRFDWKMAKMGYASGLVIGLSIGYMVLS 332
             + + ++  S   W  A +G+  G+V+GL+IG++VLS
Sbjct:   817 TLESEQVLS---WIAAAIGFTPGIVLGLTIGHIVLS 849

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 570 (205.7 bits), Expect = 1.5e-54, P = 1.5e-54
 Identities = 131/331 (39%), Positives = 190/331 (57%)

Query:     7 LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMIS 66
             L  L+L  N+L G +      +  LRSLD+  N L G LPRSL ++  LEV+NVE+N I+
Sbjct:   596 LFVLNLRQNNLSGGLPKHIFES--LRSLDVGHNLLVGKLPRSLIRFSNLEVLNVESNRIN 653

Query:    67 DSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPS 126
             D+FP W+ SLS+L++LVLRSN F  P   +  TFP   LRIID+SH  F G LP   F  
Sbjct:   654 DTFPFWLSSLSKLQVLVLRSNAFHGPIHEA--TFP--ELRIIDISHNHFNGTLPTEYFVK 709

Query:   127 MEAMKNV---DEQGRLEYMGRA-FCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGE 182
               AM ++   ++Q   +YMG   +  +S+ +  KG   +L  I  ++ A+DFS N+F GE
Sbjct:   710 WSAMSSLGKNEDQSNEKYMGSGLYYQDSMVLMNKGLAMELVRILTIYTALDFSGNKFEGE 769

Query:   183 ISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQXXXXXXXX 242
             I + +G  K L VLNLS+N+  G+IP S  N+TALESLD+S NKL G IP++        
Sbjct:   770 IPKSIGLLKELLVLNLSNNAFGGHIPSSMGNLTALESLDVSQNKLTGEIPQELGDLSFLA 829

Query:   243 XXXXXYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPKAPRLASFD-HD 301
                  +N+L G +P G QF      ++  N+ L G  L   C +   P + +  + +  +
Sbjct:   830 YMNFSHNQLAGLVPGGTQFRRQNCSAFENNLGLFGPSLDEVCRDKHTPASQQNETTETEE 889

Query:   302 ETASRFDWKMAKMGYASGLVIGLSIGYMVLS 332
             E      W  A +G+  G+V GL+IGY+++S
Sbjct:   890 EDEEEISWIAAAIGFIPGIVFGLTIGYILVS 920

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 569 (205.4 bits), Expect = 2.5e-54, P = 2.5e-54
 Identities = 134/338 (39%), Positives = 190/338 (56%)

Query:     5 TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
             + L  L+L NNSL+G + N F NA  L SLD+  N LEG LP SLA    LE++NVE+N 
Sbjct:   640 SSLSVLNLRNNSLDGSLPNIFMNAKVLSSLDVSHNTLEGKLPASLAGCSALEILNVESNN 699

Query:    65 ISDSFPCWMGSLSELKILVLRSNQFDCPPCN-SNITFPFQALRIIDLSHTEFTGFLPRRI 123
             I+D+FP W+ SL +L++LVLRSN F     N   + F F  LRI D+SH +F G LP   
Sbjct:   700 INDTFPFWLNSLPKLQVLVLRSNNFRGTLHNVDGVWFGFPLLRITDVSHNDFVGTLPSDY 759

Query:   124 FPSMEAMKNVDEQGRLEYMGRAFCD----ESITVAMKGHDFQLQNIFVMFRAMDFSSNRF 179
             F +  A+   + +  L+Y+G    D     S+ +  KG   ++Q I   +  +DF+ N+ 
Sbjct:   760 FMNWTAISKSETE--LQYIGDPE-DYGYYTSLVLMNKGVSMEMQRILTKYTVIDFAGNKI 816

Query:   180 HGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQXXXXX 239
              G+I E +G  K L VLNLS N+ TG+IP S  N+T LESLD+S NK+ G IP +     
Sbjct:   817 QGKIPESVGILKELHVLNLSSNAFTGHIPSSLANLTNLESLDISQNKIGGEIPPELGTLS 876

Query:   240 XXXXXXXXYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPKAPRLASFD 299
                     +N+L G IP+G QF+     SY GN  + G  L   C +   P+ P+ A   
Sbjct:   877 SLEWINVSHNQLVGSIPQGTQFHRQNCSSYEGNPGIYGSSLKDVCGDIHAPRPPQ-AVLP 935

Query:   300 HDETASR-----FDWKMAKMGYASGLVIGLSIGYMVLS 332
             H  ++S        W  A +G+A G+V GL++GY++ S
Sbjct:   936 HSSSSSSEEDELISWIAACLGFAPGMVFGLTMGYIMTS 973

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2046397 RLP22 "receptor like protein 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 126/330 (38%), Positives = 188/330 (56%)

Query:    10 LHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSF 69
             ++L  N LEG+I + F + +  ++LD+  N+L G LPRSL     +  ++V++N I+DSF
Sbjct:   243 VNLRKNKLEGNIPDEFYSGALTQTLDVGYNQLTGELPRSLLNCSFIRFLSVDHNRINDSF 302

Query:    70 PCWMGSLSELKILVLRSNQFDCP--PCNSNITFPFQALRIIDLSHTEFTGFLPRRIFP-- 125
             P W+ +L  LK+L LRSN F  P  P +   +  F  L+I+++SH  FTG LP   F   
Sbjct:   303 PLWLKALPNLKVLTLRSNSFHGPMSPPDDQSSLAFPKLQILEISHNRFTGSLPTNYFANW 362

Query:   126 SMEAMKNVDEQGRLEYMG-----RAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFH 180
             S++++K  DE+ RL YMG     R   ++++ +  KG   +   +   + A+DFS N+  
Sbjct:   363 SVKSLKMYDEE-RL-YMGDYSSDRFVYEDTLDLQYKGLYMEQGKVLTFYSAIDFSGNKLE 420

Query:   181 GEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQXXXXXX 240
             GEI E +G  K+L  LNLS+NS TG+IP+SF N+T LESLDLS NKL G IP++      
Sbjct:   421 GEIPESIGLLKTLIALNLSNNSFTGHIPMSFANVTELESLDLSGNKLSGEIPQELGRLSY 480

Query:   241 XXXXXXXYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPKAPRLASFDH 300
                     N+L G+IP+G Q       S+ GN  LCG PL   C  +  P          
Sbjct:   481 LAYIDVSDNQLTGKIPQGTQIIGQPKSSFEGNSGLCGLPLEESCLREDAPSTQE----PE 536

Query:   301 DETASRFDWKMAKMGYASGLVIGLSIGYMV 330
             +E     +W+ A +GY  G++ GL+IG++V
Sbjct:   537 EEEEEILEWRAAAIGYGPGVLFGLAIGHVV 566

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 558 (201.5 bits), Expect = 2.2e-53, P = 2.2e-53
 Identities = 131/336 (38%), Positives = 187/336 (55%)

Query:     2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVE 61
             +  + L  L+L  N+L G        +  LRSLD+  N+L G LPRSL  +  LEV+NVE
Sbjct:   541 NLKSNLSELNLRQNNLSGGFPEHIFES--LRSLDVGHNQLVGKLPRSLRFFSNLEVLNVE 598

Query:    62 NNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPR 121
             +N I+D FP W+ SL +L++LVLRSN F   P N  + FP   LRIID+SH  F G LP 
Sbjct:   599 SNRINDMFPFWLSSLQKLQVLVLRSNAFH-GPINQAL-FP--KLRIIDISHNHFNGSLPT 654

Query:   122 RIFPSMEAMKNVD--EQG-RLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNR 178
               F     M ++   E G  + Y+G  +  +S+ +  KG + +L  I  ++ A+DFS N+
Sbjct:   655 EYFVEWSRMSSLGTYEDGSNVNYLGSGYYQDSMVLMNKGVESELVRILTIYTAVDFSGNK 714

Query:   179 FHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQXXXX 238
             F GEI + +G  K L VLNLS+N+ TG+IP S  N+TALESLD+S NKL G IP++    
Sbjct:   715 FEGEIPKSIGLLKELHVLNLSNNAFTGHIPSSIGNLTALESLDVSQNKLYGEIPQEIGNL 774

Query:   239 XXXXXXXXXYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPKAPRLASF 298
                      +N+L G +P G QF T +  S+ GN+ L G  L   C +   P + +    
Sbjct:   775 SLLSYMNFSHNQLTGLVPGGQQFLTQRCSSFEGNLGLFGSSLEEVCRDIHTPASHQQFET 834

Query:   299 DH--DETASRFDWKMAKMGYASGLVIGLSIGYMVLS 332
                 +E      W  A +G+  G+  GL  GY+++S
Sbjct:   835 PQTEEEDEDLISWIAAAIGFGPGIAFGLMFGYILVS 870

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 131/336 (38%), Positives = 188/336 (55%)

Query:     1 GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNV 60
             G+  + L  L+L  N+L G +         LRSLD+  N+L G LPRSL  +  LEV+NV
Sbjct:   357 GNLKSNLSHLNLRQNNLSGGLPKHIFEI--LRSLDVGHNQLVGKLPRSLRFFSTLEVLNV 414

Query:    61 ENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLP 120
             E+N I+D+FP W+ SL +L++LVLRSN F  P   ++    F  LRIID+SH  F G LP
Sbjct:   415 ESNRINDTFPFWLTSLPKLQVLVLRSNAFHGPIHEAS----FLKLRIIDISHNHFNGTLP 470

Query:   121 RRIFPSMEAMKNV--DE-QGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSN 177
                F    AM ++  DE +    YMG  +  +S+ +  KG + +L  I  ++ A+DFS N
Sbjct:   471 SDYFVKWSAMSSLGTDEDRSNANYMGSVYYQDSMVLMNKGVESELIRILTIYTALDFSGN 530

Query:   178 RFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQXXX 237
             +F GEI + +G  K L VLNLS+N+ TG+IP S   +TALESLD+S NKL G IP++   
Sbjct:   531 KFEGEIPKSIGLLKELLVLNLSNNAFTGHIPSSMGKLTALESLDVSQNKLYGEIPQEIGN 590

Query:   238 XXXXXXXXXXYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPKAPRLAS 297
                       +N+L G +P G QF T    S+  N+ L G  L   C +   P + +   
Sbjct:   591 LSFLSCMNFSHNQLAGLVPGGQQFLTQPCSSFEDNLGLFGSTLEEDCRDIHTPASHQQYK 650

Query:   298 FDHDETASR--FDWKMAKMGYASGLVIGLSIGYMVL 331
                 E        W  A +G+  G+V+GL+IGY+++
Sbjct:   651 TPETEEEDEEVISWIAAAIGFIPGIVLGLTIGYILV 686

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:5019474716 AT2G15042 [Arabidopsis thaliana (taxid:3702)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 133/336 (39%), Positives = 183/336 (54%)

Query:     1 GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNV 60
             G+FS+ L  LHL  N L G      + +  L+SLD+  N+L G LPRSL +   LEV+NV
Sbjct:   192 GNFSSTLQALHLRKNHLSGVFPENISES--LKSLDVGHNQLVGKLPRSLVRISSLEVLNV 249

Query:    61 ENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLP 120
             ENN I+D+FP W+ SL EL++LVLRSN F  P   +   FP   LRIID+SH  F G LP
Sbjct:   250 ENNKINDTFPFWLSSLEELQVLVLRSNAFHGPMQQTR--FP--NLRIIDVSHNHFNGTLP 305

Query:   121 RRIFPSMEAM----KNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSS 176
                F +   M    +N D Q   EYMG ++  +SI V  KG + ++  I  +F ++DFS 
Sbjct:   306 SDFFVNWTVMFLLGENED-QFNGEYMGTSYYSDSIVVMNKGLEMEMVRILKIFTSVDFSR 364

Query:   177 NRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQXX 236
             N+F GEI + +G  K L VLNLS N+ TG+IP S   +  LESLD++ NKL G IP+   
Sbjct:   365 NKFEGEIPKSIGLLKELHVLNLSSNTFTGHIPSSMGKLRELESLDVAQNKLSGDIPQDLG 424

Query:   237 XXXXXXXXXXXYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLP-KAPRL 295
                        +N+L G +P G QF T    S+  N    G  L   C   G   +   +
Sbjct:   425 DLSYLAYMNFSHNQLVGPLPGGTQFLTQNCSSFEENAGHFGPSLEKVCDIHGKTMQESEM 484

Query:   296 ASFDHDETASRFDWKMAKMGYASGLVIGLSIGYMVL 331
                + DE      W  A +G+  G+  GL +GY+++
Sbjct:   485 PGSEEDEEEV-ISWIAATIGFIPGIAFGLMMGYILV 519

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 547 (197.6 bits), Expect = 5.2e-52, P = 5.2e-52
 Identities = 131/340 (38%), Positives = 189/340 (55%)

Query:     1 GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNV 60
             G   + L  L+L  N L G +         LRSLD+  N+L G LPRSL+ +  LEV+NV
Sbjct:   602 GHLKSTLSVLNLRQNHLSGGLPKQIFEI--LRSLDVGHNQLVGKLPRSLSFFSTLEVLNV 659

Query:    61 ENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLP 120
             E+N I+D+FP W+ SL +L++LVLRSN F  P   +  TFP   LRIID+SH  F G LP
Sbjct:   660 ESNRINDTFPFWLSSLPKLQVLVLRSNAFHGPIHEA--TFP--ELRIIDISHNRFNGTLP 715

Query:   121 RRIFPSMEAMKNV---DEQGRLEYMGRA-FCDESITVAMKGHDFQLQNIFVMFRAMDFSS 176
                F    AM ++   ++Q   +YMG   +  +S+ +  KG   +L  I  ++ A+DFS 
Sbjct:   716 TEYFVKWSAMSSLGKNEDQSNEKYMGSGLYYQDSMVLMNKGVAMELVRILTIYTAVDFSG 775

Query:   177 NRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQXX 236
             NRF GEI + +G  K L VL+LS+N+ +G++P S  N+TALESLD+S NKL G IP++  
Sbjct:   776 NRFEGEIPKSIGLLKELLVLSLSNNAFSGHMPSSMGNLTALESLDVSKNKLTGEIPQELG 835

Query:   237 XXXXXXXXXXXYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPKAPRLA 296
                        +N+L G +P G QF T    ++  N+ L G  L   C +   P + +  
Sbjct:   836 DLSFLAYMNFSHNQLAGLVPGGQQFLTQNCSAFEDNLGLFGSSLEEVCRDIHTPASHQ-- 893

Query:   297 SFDHDETASR----FDWKMAKMGYASGLVIGLSIGYMVLS 332
              F+  ET         W  A +G+  G+  GL  GY+++S
Sbjct:   894 QFETPETEEEDEDLISWIAAAIGFGPGIAFGLMFGYILVS 933

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 7.7e-52, P = 7.7e-52
 Identities = 126/339 (37%), Positives = 186/339 (54%)

Query:     3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVEN 62
             F   LI ++L  N+LEG + + F++ + LR+LD+  N+L G LPRSL     L  V+V++
Sbjct:   432 FQESLIVVNLRKNNLEGSLPDIFSDGALLRTLDVGYNQLTGKLPRSLLNCSMLRFVSVDH 491

Query:    63 NMISDSFPCWMGSLSELKILVLRSNQFD---CPPCNSNITFPFQALRIIDLSHTEFTGFL 119
             N I D+FP W+ +L +L+ L LRSN+F     PP    + FP   LRI+++S   FTG L
Sbjct:   492 NKIKDTFPFWLKALPDLQALTLRSNKFHGPISPPDRGPLAFP--KLRILEISDNNFTGSL 549

Query:   120 PRRIFPSMEAMK-NVDEQGRLEYMGRA-----FCDESITVAMKGHDFQLQNIFVMFRAMD 173
             P   F + EA    ++E GR+ YMG         ++++ +  KG   +   +   +  +D
Sbjct:   550 PPNYFVNWEASSLQMNEDGRI-YMGDYNNPYYIYEDTVDLQYKGLFMEQGKVLTSYATID 608

Query:   174 FSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 233
             FS N+  G+I E +G  K+L  LNLS+N+ TG+IP+S  N+T LESLDLS N+L G IP 
Sbjct:   609 FSGNKLEGQIPESIGLLKALIALNLSNNAFTGHIPLSLANVTELESLDLSRNQLSGTIPN 668

Query:   234 QXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPKAP 293
                           +N+L G IP+G Q       S+ GN  LCG PL   C     P  P
Sbjct:   669 GLKTLSFLAYISVAHNQLIGEIPQGTQITGQSKSSFEGNAGLCGLPLQGSCF---APPTP 725

Query:   294 RLASFDHDETASRFDWKMAKMGYASGLVIGLSIGYMVLS 332
             +    D DE     +WK   +GY  GL++GL + +++ S
Sbjct:   726 QPKEEDEDEEV--LNWKAVVIGYWPGLLLGLIMAHVIAS 762

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	333
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-30
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-25
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-19
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-18
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-18
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	3e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  120 bits (303), Expect = 3e-30
 Identities = 87/289 (30%), Positives = 133/289 (46%), Gaps = 24/289 (8%)

Query: 7   LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMIS 66
           L  L L  N+L G I     ++ +L  L L+SN LEG +P+SL     L  V +++N  S
Sbjct: 358 LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417

Query: 67  DSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPS 126
              P     L  +  L + +N       +     P  +L+++ L+  +F G LP      
Sbjct: 418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP--SLQMLSLARNKFFGGLPD--SFG 473

Query: 127 MEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEV 186
            + ++N+D       + R     ++   +      +Q        +  S N+  GEI + 
Sbjct: 474 SKRLENLD-------LSRNQFSGAVPRKLGSLSELMQ--------LKLSENKLSGEIPDE 518

Query: 187 LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL 246
           L + K L  L+LSHN L+G IP SF  M  L  LDLS N+L G IP+ L +V +L  +N+
Sbjct: 519 LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNI 578

Query: 247 SYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPKAPRL 295
           S+N L G +P    F      +  GNI LCG       +  GLP   R+
Sbjct: 579 SHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD-----TTSGLPPCKRV 622

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  106 bits (266), Expect = 2e-25
 Identities = 81/263 (30%), Positives = 123/263 (46%), Gaps = 28/263 (10%)

Query: 1   GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNV 60
                 L TL L NN L G I N   + S L+ LDL  N L G +P SL     LE + +
Sbjct: 136 RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195

Query: 61  ENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQ-----ALRIIDLSHTEF 115
            +N +    P  +G +  LK + L  N       N +   P++     +L  +DL +   
Sbjct: 196 ASNQLVGQIPRELGQMKSLKWIYLGYN-------NLSGEIPYEIGGLTSLNHLDLVYNNL 248

Query: 116 TGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFS 175
           TG +P     S+  +KN      L+Y+        ++  +    F LQ +     ++D S
Sbjct: 249 TGPIP----SSLGNLKN------LQYL--FLYQNKLSGPIPPSIFSLQKLI----SLDLS 292

Query: 176 SNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQL 235
            N   GEI E++   ++L++L+L  N+ TG IPV+  ++  L+ L L  NK  G IP+ L
Sbjct: 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352

Query: 236 LSVTALALLNLSYNRLWGRIPRG 258
                L +L+LS N L G IP G
Sbjct: 353 GKHNNLTVLDLSTNNLTGEIPEG 375

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 98.0 bits (244), Expect = 2e-22
 Identities = 75/254 (29%), Positives = 120/254 (47%), Gaps = 33/254 (12%)

Query: 10  LHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSF 69
           LHL +N+  G I     +   L+ L L+SNK  G +P++L K+  L V+++  N ++   
Sbjct: 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372

Query: 70  PCWMGSLSELKILVLRSNQFD--CPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSM 127
           P  + S   L  L+L SN  +   P          ++LR + L    F+G LP   F  +
Sbjct: 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGAC----RSLRRVRLQDNSFSGELPSE-FTKL 427

Query: 128 EAMKNVD-----EQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGE 182
             +  +D      QGR+              + K     LQ        +  + N+F G 
Sbjct: 428 PLVYFLDISNNNLQGRIN-------------SRKWDMPSLQ-------MLSLARNKFFGG 467

Query: 183 ISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALA 242
           + +  G+ K L+ L+LS N  +G +P    +++ L  L LS NKL G IP++L S   L 
Sbjct: 468 LPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLV 526

Query: 243 LLNLSYNRLWGRIP 256
            L+LS+N+L G+IP
Sbjct: 527 SLDLSHNQLSGQIP 540

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 92.6 bits (230), Expect = 1e-20
 Identities = 76/257 (29%), Positives = 122/257 (47%), Gaps = 27/257 (10%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
            +LI+L L +NSL G I        +L  L L+SN   G +P +L    +L+V+ + +N 
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 65  ISDSFPCWMGSLSELKILVLRSNQF--DCPP--CNSNITFPFQALRIIDLSHTEFTGFLP 120
            S   P  +G  + L +L L +N    + P   C+S   F     ++I  S++     L 
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLF-----KLILFSNS-----LE 393

Query: 121 RRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFH 180
             I  S+ A +++    R+     +F  E  +   K     L         +D S+N   
Sbjct: 394 GEIPKSLGACRSLR---RVRLQDNSFSGELPSEFTK---LPLVYF------LDISNNNLQ 441

Query: 181 GEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA 240
           G I+    +  SL++L+L+ N   G +P SF +   LE+LDLS N+  G +P +L S++ 
Sbjct: 442 GRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSE 500

Query: 241 LALLNLSYNRLWGRIPR 257
           L  L LS N+L G IP 
Sbjct: 501 LMQLKLSENKLSGEIPD 517

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 90.3 bits (224), Expect = 7e-20
 Identities = 82/280 (29%), Positives = 125/280 (44%), Gaps = 39/280 (13%)

Query: 1   GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNV 60
           GSFS+ L  L L  N L G I N+  N + L  L L SN+L G +PR L +   L+ + +
Sbjct: 161 GSFSS-LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219

Query: 61  ENNMISDSFPCWMGSLSELKILVLRSNQF--DCPPCNSNITFPFQALRIIDLSHTEFTGF 118
             N +S   P  +G L+ L  L L  N      P    N+      L+ + L   + +G 
Sbjct: 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK----NLQYLFLYQNKLSGP 275

Query: 119 LPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVM---------- 168
           +P  IF S++ + ++D             D S++  +     QLQN+ ++          
Sbjct: 276 IPPSIF-SLQKLISLD-----------LSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK 323

Query: 169 ----------FRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALE 218
                      + +   SN+F GEI + LG   +L VL+LS N+LTG IP    +   L 
Sbjct: 324 IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLF 383

Query: 219 SLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG 258
            L L  N L+G IP+ L +  +L  + L  N   G +P  
Sbjct: 384 KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE 423

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 88.4 bits (219), Expect = 3e-19
 Identities = 75/257 (29%), Positives = 125/257 (48%), Gaps = 28/257 (10%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
           T L  L L  N+L G I ++  N  +L+ L LY NKL GP+P S+    KL  +++ +N 
Sbjct: 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRI- 123
           +S   P  +  L  L+IL L SN F      +  + P   L+++ L   +F+G +P+ + 
Sbjct: 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP--RLQVLQLWSNKFSGEIPKNLG 353

Query: 124 ----FPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRF 179
                  ++   N +  G +       C         G+ F+L    ++F      SN  
Sbjct: 354 KHNNLTVLDLSTN-NLTGEIP---EGLCSS-------GNLFKL----ILF------SNSL 392

Query: 180 HGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT 239
            GEI + LG  +SL+ + L  NS +G +P  F  +  +  LD+S N L GRI  +   + 
Sbjct: 393 EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP 452

Query: 240 ALALLNLSYNRLWGRIP 256
           +L +L+L+ N+ +G +P
Sbjct: 453 SLQMLSLARNKFFGGLP 469

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 87.6 bits (217), Expect = 6e-19
 Identities = 75/278 (26%), Positives = 121/278 (43%), Gaps = 69/278 (24%)

Query: 4   STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPR------SLAKYIK--- 54
           S+ ++++ L   ++ G I +      ++++++L +N+L GP+P       S  +Y+    
Sbjct: 68  SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSN 127

Query: 55  --------------LEVVNVENNMISDSFPCWMGSLSELKILVLRSNQF--DCPPCNSNI 98
                         LE +++ NNM+S   P  +GS S LK+L L  N      P   +N+
Sbjct: 128 NNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL 187

Query: 99  TFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGH 158
           T    +L  + L+  +  G +PR     +  MK++    +  Y+G               
Sbjct: 188 T----SLEFLTLASNQLVGQIPRE----LGQMKSL----KWIYLG--------------- 220

Query: 159 DFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALE 218
                             N   GEI   +G   SL  L+L +N+LTG IP S  N+  L+
Sbjct: 221 -----------------YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ 263

Query: 219 SLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIP 256
            L L  NKL G IP  + S+  L  L+LS N L G IP
Sbjct: 264 YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 86.8 bits (215), Expect = 1e-18
 Identities = 45/112 (40%), Positives = 62/112 (55%), Gaps = 10/112 (8%)

Query: 181 GEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA 240
           G I   +   + L+ +NLS NS+ GNIP S  ++T+LE LDLS+N  +G IPE L  +T+
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 241 LALLNLSYNRLWGRIP--------RGNQFNTFQNDSYIG--NIRLCGEPLTV 282
           L +LNL+ N L GR+P            FN   N    G   +R CG  L+V
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLSV 543

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 85.3 bits (211), Expect = 4e-18
 Identities = 63/230 (27%), Positives = 98/230 (42%), Gaps = 67/230 (29%)

Query: 27  NASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRS 86
           N+S + S+DL    + G +  ++ +   ++ +N+ NN +S   P                
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIP---------------- 110

Query: 87  NQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAF 146
                     +I     +LR ++LS+  FTG +PR   P++E +                
Sbjct: 111 ---------DDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETL---------------- 145

Query: 147 CDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGN 206
                                     D S+N   GEI   +G+F SLKVL+L  N L G 
Sbjct: 146 --------------------------DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK 179

Query: 207 IPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIP 256
           IP S  N+T+LE L L+ N+L G+IP +L  + +L  + L YN L G IP
Sbjct: 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP 229

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 77.6 bits (191), Expect = 1e-15
 Identities = 75/282 (26%), Positives = 121/282 (42%), Gaps = 34/282 (12%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
             L  L L  N L G I  +  +   L SLDL  N L G +P  + +   LE++++ +N 
Sbjct: 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN 319

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCP-PCN----SNITFPFQALRIIDLSHTEFTGFL 119
            +   P  + SL  L++L L SN+F    P N    +N+T       ++DLS    TG +
Sbjct: 320 FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLT-------VLDLSTNNLTGEI 372

Query: 120 PRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRF 179
           P  +  S    K +     LE        +S+         +LQ+            N F
Sbjct: 373 PEGLCSSGNLFKLILFSNSLE----GEIPKSLGACRSLRRVRLQD------------NSF 416

Query: 180 HGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT 239
            GE+         +  L++S+N+L G I     +M +L+ L L+ NK  G +P+   S  
Sbjct: 417 SGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-K 475

Query: 240 ALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLT 281
            L  L+LS N+  G +PR        + S +  ++L    L+
Sbjct: 476 RLENLDLSRNQFSGAVPRK-----LGSLSELMQLKLSENKLS 512

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 29/78 (37%), Positives = 43/78 (55%)

Query: 10  LHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSF 69
           L L+N  L G I N  +   HL+S++L  N + G +P SL     LEV+++  N  + S 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 70  PCWMGSLSELKILVLRSN 87
           P  +G L+ L+IL L  N
Sbjct: 483 PESLGQLTSLRILNLNGN 500

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 8e-08
 Identities = 26/61 (42%), Positives = 36/61 (59%)

Query: 196 LNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRI 255
           L L +  L G IP     +  L+S++LS N + G IP  L S+T+L +L+LSYN   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 256 P 256
           P
Sbjct: 483 P 483

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.2 bits (113), Expect = 2e-07
 Identities = 24/60 (40%), Positives = 34/60 (56%)

Query: 192 SLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 251
           +LK L+LS+N LT     +F+ +  L+ LDLS N L    PE    + +L  L+LS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 50.6 bits (121), Expect = 8e-07
 Identities = 50/204 (24%), Positives = 74/204 (36%), Gaps = 67/204 (32%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
             L  L L  N   G + ++F  +  L +LDL  N+  G +PR L    +L  + +  N 
Sbjct: 452 PSLQMLSLARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK 510

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           +S   P     LS  K LV                        +DLSH + +G +P   F
Sbjct: 511 LSGEIP---DELSSCKKLV-----------------------SLDLSHNQLSGQIPAS-F 543

Query: 125 PSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEIS 184
             M  +                                         +D S N+  GEI 
Sbjct: 544 SEMPVLSQ---------------------------------------LDLSQNQLSGEIP 564

Query: 185 EVLGNFKSLKVLNLSHNSLTGNIP 208
           + LGN +SL  +N+SHN L G++P
Sbjct: 565 KNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.2 bits (108), Expect = 9e-07
 Identities = 23/55 (41%), Positives = 30/55 (54%)

Query: 173 DFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 227
           D S+NR             +LKVL+LS N+LT   P +F  + +L SLDLS N L
Sbjct: 6   DLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 21/70 (30%), Positives = 36/70 (51%)

Query: 7   LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMIS 66
           L +++L  NS+ G+I  +  + + L  LDL  N   G +P SL +   L ++N+  N +S
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 67  DSFPCWMGSL 76
              P  +G  
Sbjct: 504 GRVPAALGGR 513

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 189 NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLL-SVTALALLNLS 247
           N   +  ++LS  +++G I  +   +  +++++LS N+L G IP+ +  + ++L  LNLS
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 248 YNRLWGRIPRGNQFN 262
            N   G IPRG+  N
Sbjct: 127 NNNFTGSIPRGSIPN 141

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.5 bits (113), Expect = 6e-06
 Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 6/119 (5%)

Query: 4   STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
           S  L  L L  N   G +     + S L  L L  NKL G +P  L+   KL  +++ +N
Sbjct: 474 SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN 533

Query: 64  MISDSFPCWMGSLSELKILVLRSNQF--DCPPCNSNITFPFQALRIIDLSHTEFTGFLP 120
            +S   P     +  L  L L  NQ   + P    N+    ++L  +++SH    G LP
Sbjct: 534 QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV----ESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 19/39 (48%), Positives = 27/39 (69%)

Query: 172 MDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVS 210
           +D S N F+G I E LG   SL++LNL+ NSL+G +P +
Sbjct: 471 LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 16/59 (27%), Positives = 25/59 (42%)

Query: 7  LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMI 65
          L +L L NN L       F    +L+ LDL  N L    P + +    L  +++  N +
Sbjct: 2  LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 2/37 (5%)

Query: 191 KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 227
            +L+ L+LS+N +T ++P    N+  LE+LDLS NK+
Sbjct: 1   TNLETLDLSNNQIT-DLP-PLSNLPNLETLDLSGNKI 35

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 23/128 (17%)

Query: 4   STELITLHLENNSLEGHIHNTFA-----NASHLRSLDLYSNKLEGPLPRSLAKYI----K 54
           S+ L  L L NN L        A         L  L L  N+LEG    +LAK +     
Sbjct: 107 SSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRD 166

Query: 55  LEVVNVENNMISDS--------FPCWMGSLSELKILVLRSNQFDCPPCNS-NITFP-FQA 104
           L+ +N+ NN I D+              +   L++L L +N       ++   T    ++
Sbjct: 167 LKELNLANNGIGDAGIRALAEGLK----ANCNLEVLDLNNNGLTDEGASALAETLASLKS 222

Query: 105 LRIIDLSH 112
           L +++L  
Sbjct: 223 LEVLNLGD 230

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 182 EISEVLGNFKS-LKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA 240
           +I  ++G  KS LK L+LS N +  ++P    N+  L++LDLSFN L   +P+ L +++ 
Sbjct: 130 DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSN 187

Query: 241 LALLNLSYNRL 251
           L  L+LS N++
Sbjct: 188 LNNLDLSGNKI 198

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	333
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.94
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.93
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.9
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.88
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.83
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.82
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.81
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.8
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.76
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.76
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.75
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.74
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.73
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.72
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.69
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.69
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.66
PLN03150	623	hypothetical protein; Provisional	99.58
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.39
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.39
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.38
PLN03150	623	hypothetical protein; Provisional	99.31
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.25
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.25
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.24
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.21
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.21
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.19
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.18
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.17
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.12
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.1
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.01
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.0
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.92
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.76
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.74
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.65
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.63
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.59
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.47
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.44
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.43
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.41
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.4
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.34
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.28
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.27
PRK15386	426	type III secretion protein GogB; Provisional	98.17
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.16
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.14
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.12
PRK15386	426	type III secretion protein GogB; Provisional	98.06
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.72
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.72
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.65
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.6
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.39
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.25
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.11
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.84
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.52
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.04
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.99
KOG4341	483	consensus F-box protein containing LRR [General fu	95.68
KOG4308	478	consensus LRR-containing protein [Function unknown	95.67
KOG4308	478	consensus LRR-containing protein [Function unknown	94.62
KOG4341	483	consensus F-box protein containing LRR [General fu	94.61
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.52
smart00370	26	LRR Leucine-rich repeats, outliers.	93.53
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.53
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.48
smart00370	26	LRR Leucine-rich repeats, outliers.	92.71
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.71
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.37
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.73
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.77
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	90.22
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	84.4
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	83.63
KOG1947	482	consensus Leucine rich repeat proteins, some prote	82.47
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	80.04

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.4e-32  Score=272.39  Aligned_cols=274  Identities=28%  Similarity=0.436  Sum_probs=225.9

Q ss_pred             CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161            2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI   81 (333)
Q Consensus         2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   81 (333)
                      .+| +|++|++++|.+.+..|..+..+++|+.|++++|++++.+|..+..+.+|+.|++++|.+.+..|..+..+++|+.
T Consensus       330 ~l~-~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~  408 (968)
T PLN00113        330 SLP-RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRR  408 (968)
T ss_pred             cCC-CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCE
Confidence            355 7899999999999888988999999999999999998888888888888999999999988888888888889999


Q ss_pred             EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccc--cccccc---cCceEEee-
Q 039161           82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEY--MGRAFC---DESITVAM-  155 (333)
Q Consensus        82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~--~~~~~~---~~~~~~~~-  155 (333)
                      |++++|++++..+..+  ..+++|+.|++++|.+++.++.. +..+++|+.+++.+|...  ++....   ........ 
T Consensus       409 L~L~~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n  485 (968)
T PLN00113        409 VRLQDNSFSGELPSEF--TKLPLVYFLDISNNNLQGRINSR-KWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRN  485 (968)
T ss_pred             EECcCCEeeeECChhH--hcCCCCCEEECcCCcccCccChh-hccCCCCcEEECcCceeeeecCcccccccceEEECcCC
Confidence            9999998888777666  67888888888888888776654 456777777777765421  111100   00011111 


Q ss_pred             --cCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCC
Q 039161          156 --KGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE  233 (333)
Q Consensus       156 --~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  233 (333)
                        .+........+++|+.|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|+|++|.+++.+|.
T Consensus       486 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  565 (968)
T PLN00113        486 QFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK  565 (968)
T ss_pred             ccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCCh
Confidence              111222234478999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCC
Q 039161          234 QLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEP  279 (333)
Q Consensus       234 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~  279 (333)
                      .+..+++|+.+++++|+++|.+|...++..+....+.+|+.+||.+
T Consensus       566 ~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        566 NLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             hHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            9999999999999999999999999998899888899999999864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=6.8e-30  Score=253.20  Aligned_cols=251  Identities=29%  Similarity=0.407  Sum_probs=214.4

Q ss_pred             CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161            3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL   82 (333)
Q Consensus         3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   82 (333)
                      ++ +|+.|++++|.+.+..|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+++..|.++..+++|+.|
T Consensus       307 l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L  385 (968)
T PLN00113        307 LQ-NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL  385 (968)
T ss_pred             CC-CCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEE
Confidence            45 79999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccccc--ccc--cc--cCceEEeec
Q 039161           83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYM--GRA--FC--DESITVAMK  156 (333)
Q Consensus        83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~--~~~--~~--~~~~~~~~~  156 (333)
                      ++++|++.+..+..+  ..+++|+.|++++|.+++..|.. +..++.|+.+++.++...-  ...  ..  .....+..+
T Consensus       386 ~l~~n~l~~~~p~~~--~~~~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n  462 (968)
T PLN00113        386 ILFSNSLEGEIPKSL--GACRSLRRVRLQDNSFSGELPSE-FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN  462 (968)
T ss_pred             ECcCCEecccCCHHH--hCCCCCCEEECcCCEeeeECChh-HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCc
Confidence            999999998888766  77899999999999999888865 7788889998887764221  100  00  001111111


Q ss_pred             C---cchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCC
Q 039161          157 G---HDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE  233 (333)
Q Consensus       157 ~---~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  233 (333)
                      .   ...... ..++|+.|++++|++++..|..+..+++|+.|++++|++.+.+|..++.+++|+.|++++|.+++.+|.
T Consensus       463 ~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  541 (968)
T PLN00113        463 KFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA  541 (968)
T ss_pred             eeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCCh
Confidence            0   111111 146899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccCccceeecccCcceecCCCC
Q 039161          234 QLLSVTALALLNLSYNRLWGRIPRG  258 (333)
Q Consensus       234 ~~~~l~~L~~L~l~~N~l~~~~p~~  258 (333)
                      .+..+++|+.|++++|+++|.+|..
T Consensus       542 ~~~~l~~L~~L~Ls~N~l~~~~p~~  566 (968)
T PLN00113        542 SFSEMPVLSQLDLSQNQLSGEIPKN  566 (968)
T ss_pred             hHhCcccCCEEECCCCcccccCChh
Confidence            9999999999999999999999974

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.94  E-value=1.3e-28  Score=214.56  Aligned_cols=249  Identities=22%  Similarity=0.227  Sum_probs=182.0

Q ss_pred             CcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEc
Q 039161            5 TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVL   84 (333)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   84 (333)
                      .+++.|+|.+|.|+.+..+.++.++.|+.||||.|.|+.+...+|..-.++++|+|++|+|+......|..+.+|.+|.|
T Consensus       125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL  204 (873)
T KOG4194|consen  125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL  204 (873)
T ss_pred             cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence            46899999999999888889999999999999999999776678888889999999999999888888999999999999


Q ss_pred             ccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc-ccccccccCceE---EeecCcc-
Q 039161           85 RSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGRAFCDESIT---VAMKGHD-  159 (333)
Q Consensus        85 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~~~~~~~~---~~~~~~~-  159 (333)
                      +.|+++..+...|  ..++.|+.|++..|++. ...-.-|+++++|+.+.+..|.. .+....+.....   ....... 
T Consensus       205 srNrittLp~r~F--k~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l  281 (873)
T KOG4194|consen  205 SRNRITTLPQRSF--KRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL  281 (873)
T ss_pred             ccCcccccCHHHh--hhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence            9999998887776  77999999999999887 33222378888888888776542 233333211110   1111000 


Q ss_pred             -----hhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCC
Q 039161          160 -----FQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQ  234 (333)
Q Consensus       160 -----~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  234 (333)
                           ..+.. +..|+.|++|+|.+.++.++.+..+++|+.|+|++|+++...+..|..+..|++|+|++|.+...-...
T Consensus       282 ~~vn~g~lfg-Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a  360 (873)
T KOG4194|consen  282 QAVNEGWLFG-LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGA  360 (873)
T ss_pred             hhhhcccccc-cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhH
Confidence                 01111 566777777777777777777777777777777777777666677777777777777777776555556


Q ss_pred             ccccCccceeecccCcceecCCC
Q 039161          235 LLSVTALALLNLSYNRLWGRIPR  257 (333)
Q Consensus       235 ~~~l~~L~~L~l~~N~l~~~~p~  257 (333)
                      |..+++|+.|||++|.+++.|..
T Consensus       361 f~~lssL~~LdLr~N~ls~~IED  383 (873)
T KOG4194|consen  361 FVGLSSLHKLDLRSNELSWCIED  383 (873)
T ss_pred             HHHhhhhhhhcCcCCeEEEEEec
Confidence            66677777777777777666654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.93  E-value=4.9e-27  Score=204.84  Aligned_cols=272  Identities=23%  Similarity=0.221  Sum_probs=150.2

Q ss_pred             CCCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCC----
Q 039161            1 GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSL----   76 (333)
Q Consensus         1 g~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l----   76 (333)
                      |-+|+..++||+++|.+..+-+..|.++++|+++++.+|.++ .+|.......+|+.|+|.+|.|+....+.+..+    
T Consensus        74 g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alr  152 (873)
T KOG4194|consen   74 GFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALR  152 (873)
T ss_pred             CcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhh
Confidence            456777888999999999888888889999999888888887 566544334446666666666554444444444    


Q ss_pred             --------------------CCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhccc
Q 039161           77 --------------------SELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQ  136 (333)
Q Consensus        77 --------------------~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~  136 (333)
                                          .++++|+|++|+++....+.|  ..+.+|..|.+++|+++ .+|...|+.++.|+.|++.
T Consensus       153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F--~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLn  229 (873)
T KOG4194|consen  153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHF--DSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLN  229 (873)
T ss_pred             hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccc--cccchheeeecccCccc-ccCHHHhhhcchhhhhhcc
Confidence                                455555555555555554444  44556666666666666 5555556666666666665


Q ss_pred             Cccccccc-ccccCce-----EEeecC---cchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCC
Q 039161          137 GRLEYMGR-AFCDESI-----TVAMKG---HDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNI  207 (333)
Q Consensus       137 ~~~~~~~~-~~~~~~~-----~~~~~~---~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  207 (333)
                      .|...+.. ..+....     .+..++   .....+-.+.++++|+|+.|++...-..++-+++.|+.|++|+|.|..+-
T Consensus       230 rN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih  309 (873)
T KOG4194|consen  230 RNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH  309 (873)
T ss_pred             ccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee
Confidence            55433221 1111100     000000   00000111445555555555555444445555555555555555555555


Q ss_pred             ccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCCCC
Q 039161          208 PVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLT  281 (333)
Q Consensus       208 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~  281 (333)
                      ++.+...++|+.|+|++|+|+...+..|..+..|+.|+|++|.+. .    ++-..|...+.....+|..|.+.
T Consensus       310 ~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~----l~e~af~~lssL~~LdLr~N~ls  378 (873)
T KOG4194|consen  310 IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-H----LAEGAFVGLSSLHKLDLRSNELS  378 (873)
T ss_pred             cchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-H----HHhhHHHHhhhhhhhcCcCCeEE
Confidence            555555555666666666555555555555555555666666553 1    11223333344444555555444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.90  E-value=1.1e-25  Score=187.96  Aligned_cols=276  Identities=20%  Similarity=0.286  Sum_probs=210.5

Q ss_pred             CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccC-CcCCCcccccccCCCCCC
Q 039161            2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVEN-NMISDSFPCWMGSLSELK   80 (333)
Q Consensus         2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~   80 (333)
                      ++|+..+.++|..|+|+.+++++|..+++|+.||||+|+|+.+-|++|.++.+|..|-+-+ |+|+......|.++..++
T Consensus        64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq  143 (498)
T KOG4237|consen   64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ  143 (498)
T ss_pred             cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence            5788899999999999999999999999999999999999999999999999988776655 999987778999999999


Q ss_pred             EEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcc-------cccccccccCceE-
Q 039161           81 ILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRL-------EYMGRAFCDESIT-  152 (333)
Q Consensus        81 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~-------~~~~~~~~~~~~~-  152 (333)
                      .|.+.-|++.....+.+  ..++++..|.+..|.+. .++..-+..+..++.+++..+.       ............. 
T Consensus       144 rLllNan~i~Cir~~al--~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet  220 (498)
T KOG4237|consen  144 RLLLNANHINCIRQDAL--RDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET  220 (498)
T ss_pred             HHhcChhhhcchhHHHH--HHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence            99999999988887777  78999999999999888 6666668888888888776543       1111111000000 


Q ss_pred             ----EeecCc-------chhhhhhhhccceE--Ecc-CcccCccch-hhhhCCCCCCEEEccCCcCCCCCccccccCCCC
Q 039161          153 ----VAMKGH-------DFQLQNIFVMFRAM--DFS-SNRFHGEIS-EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL  217 (333)
Q Consensus       153 ----~~~~~~-------~~~~~~~~~~L~~L--~ls-~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  217 (333)
                          +.....       ..........++.+  .++ .+....+.| ..|..+++|+.|+|++|+++++-+.+|.+...+
T Consensus       221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l  300 (498)
T KOG4237|consen  221 SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL  300 (498)
T ss_pred             ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh
Confidence                000000       00000001112222  122 222333444 468999999999999999999999999999999


Q ss_pred             cEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCCCCCCCC
Q 039161          218 ESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCS  285 (333)
Q Consensus       218 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C~  285 (333)
                      ++|.|..|++...-...|.++..|+.|+|.+|+|+...|-     .|+...+.+.+.+-+||+.|+|.
T Consensus       301 ~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~-----aF~~~~~l~~l~l~~Np~~CnC~  363 (498)
T KOG4237|consen  301 QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG-----AFQTLFSLSTLNLLSNPFNCNCR  363 (498)
T ss_pred             hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc-----cccccceeeeeehccCcccCccc
Confidence            9999999999877777889999999999999999866654     56666777888889999999985

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.88  E-value=5.3e-24  Score=187.74  Aligned_cols=270  Identities=21%  Similarity=0.272  Sum_probs=171.9

Q ss_pred             CcCcccEEECcCCccc-cccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161            3 FSTELITLHLENNSLE-GHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI   81 (333)
Q Consensus         3 l~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   81 (333)
                      +| .|+.+++..|++. .-+|..+..+..|+.||||+|+++ +.|..+..-.++-+|+||+|+|..+..+.|.++..|-+
T Consensus        77 Lp-~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLf  154 (1255)
T KOG0444|consen   77 LP-RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLF  154 (1255)
T ss_pred             ch-hhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhh
Confidence            45 6788888888874 233444557888888999998888 67888888888888888888888544456668888888


Q ss_pred             EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccc-------cccccCceEEe
Q 039161           82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMG-------RAFCDESITVA  154 (333)
Q Consensus        82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~-------~~~~~~~~~~~  154 (333)
                      |||++|++...+|..   ..+..|++|++++|.+... ...-.+++++|+.|++++....+.       ..+.......+
T Consensus       155 LDLS~NrLe~LPPQ~---RRL~~LqtL~Ls~NPL~hf-QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS  230 (1255)
T KOG0444|consen  155 LDLSNNRLEMLPPQI---RRLSMLQTLKLSNNPLNHF-QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS  230 (1255)
T ss_pred             hccccchhhhcCHHH---HHHhhhhhhhcCCChhhHH-HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence            888888888777754   5677888888888877632 222256677777777766432211       11111111111


Q ss_pred             ecCc--chhhhhhhhccceEEccCcccCc----------------------cchhhhhCCCCCCEEEccCCcCCC-CCcc
Q 039161          155 MKGH--DFQLQNIFVMFRAMDFSSNRFHG----------------------EISEVLGNFKSLKVLNLSHNSLTG-NIPV  209 (333)
Q Consensus       155 ~~~~--~~~~~~~~~~L~~L~ls~n~l~~----------------------~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~  209 (333)
                      -+..  ..+..-.+++|+.|+||+|+++.                      .+|.++.+++.|+.|++.+|+++- -+|.
T Consensus       231 ~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPS  310 (1255)
T KOG0444|consen  231 ENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPS  310 (1255)
T ss_pred             ccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCcc
Confidence            1111  11111113444444444444431                      455555555555555555555542 3566


Q ss_pred             ccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCCCCccC-CccccccccccCCCCCCC
Q 039161          210 SFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFN-TFQNDSYIGNIRLCGEPL  280 (333)
Q Consensus       210 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~~~~~~~~~~~l~g~~~  280 (333)
                      .++++..|+.+..++|.+. ..|+.++.|.+|+.|.|++|++. ++|.++.+. .+..+....|+.|.-.|-
T Consensus       311 GIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  311 GIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             chhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence            7777777777777777777 77888888888889999999887 777765543 244455555665554443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.83  E-value=5.5e-22  Score=175.13  Aligned_cols=248  Identities=21%  Similarity=0.274  Sum_probs=161.4

Q ss_pred             CCcCcccEEECcCCccc-cccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCC-------------
Q 039161            2 SFSTELITLHLENNSLE-GHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISD-------------   67 (333)
Q Consensus         2 ~l~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-------------   67 (333)
                      -+| -++-.|+++|.+. +..|.....|++++.|.|...++. .+|..++.+.+|++|.+++|++..             
T Consensus         5 VLp-FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRs   82 (1255)
T KOG0444|consen    5 VLP-FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRS   82 (1255)
T ss_pred             ccc-eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHH
Confidence            355 6677777787776 566666666777777776666665 566666666666666666655431             


Q ss_pred             -----------cccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhccc
Q 039161           68 -----------SFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQ  136 (333)
Q Consensus        68 -----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~  136 (333)
                                 -+|..+..+..|..|||++|++...+..-   ....++-.|++|+|+|. .+|..+|.+++.|-.|+++
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~L---E~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS  158 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNL---EYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLS  158 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhhhcchhh---hhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccc
Confidence                       24555556667777777777776555332   34566777888888887 7888888888888888888


Q ss_pred             Ccccc-cccccccC--ceEEeecCcchhhhh-----hhhccceEEccCcccC-ccchhhhhCCCCCCEEEccCCcCCCCC
Q 039161          137 GRLEY-MGRAFCDE--SITVAMKGHDFQLQN-----IFVMFRAMDFSSNRFH-GEISEVLGNFKSLKVLNLSHNSLTGNI  207 (333)
Q Consensus       137 ~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~  207 (333)
                      +|... +++.....  .-....++.+....+     .+.+|++|++++.+-+ ..+|.++..+.+|..+|+|.|.+. ..
T Consensus       159 ~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v  237 (1255)
T KOG0444|consen  159 NNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV  237 (1255)
T ss_pred             cchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence            76522 21111000  000111111111111     1345666666665433 356777888888888888888888 78


Q ss_pred             ccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCCC
Q 039161          208 PVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG  258 (333)
Q Consensus       208 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~  258 (333)
                      |+++..+.+|+.|+||+|+|+ .+.-......+++.|+++.|+++ .+|..
T Consensus       238 Pecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~a  286 (1255)
T KOG0444|consen  238 PECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDA  286 (1255)
T ss_pred             hHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHH
Confidence            888888888888999988888 55555666778888889998887 66643

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.82  E-value=2.7e-22  Score=167.75  Aligned_cols=247  Identities=18%  Similarity=0.152  Sum_probs=189.5

Q ss_pred             CCcCcccEEECcCCccccccchhhhCCCCccEEECCC-CcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCC
Q 039161            2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYS-NKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELK   80 (333)
Q Consensus         2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   80 (333)
                      .++ +|+.|||++|+|+.+.|++|.++..+.+|-+.+ |+|+....++|.++..|+.|.+.-|++.-.....|..++++.
T Consensus        89 ~l~-~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~  167 (498)
T KOG4237|consen   89 TLH-RLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLS  167 (498)
T ss_pred             chh-hhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcc
Confidence            455 799999999999999999999999998887777 999977778999999999999999999988888999999999


Q ss_pred             EEEcccCcCCCCCCCCCCcccCCcccEEEcCCCccccc------------CCcccccChHHhhhhcccCcc-cccccccc
Q 039161           81 ILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGF------------LPRRIFPSMEAMKNVDEQGRL-EYMGRAFC  147 (333)
Q Consensus        81 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~------------~~~~~~~~l~~L~~l~~~~~~-~~~~~~~~  147 (333)
                      .|.+.+|.+..+....+  ..+.+++.+.+..|.+...            .|.+ ++...-.....+.... .++....+
T Consensus       168 lLslyDn~~q~i~~~tf--~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie-tsgarc~~p~rl~~~Ri~q~~a~kf  244 (498)
T KOG4237|consen  168 LLSLYDNKIQSICKGTF--QGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE-TSGARCVSPYRLYYKRINQEDARKF  244 (498)
T ss_pred             hhcccchhhhhhccccc--cchhccchHhhhcCccccccccchhhhHHhhchhh-cccceecchHHHHHHHhcccchhhh
Confidence            99999999988876666  7788899999888873311            0100 1111100000000000 00000000


Q ss_pred             cC---ce--EE-----eecCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCC
Q 039161          148 DE---SI--TV-----AMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL  217 (333)
Q Consensus       148 ~~---~~--~~-----~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  217 (333)
                      ..   ..  ..     .....+...+..+++|+.|+|++|+++++-+.+|.....+++|.|..|++...--..|.++..|
T Consensus       245 ~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L  324 (498)
T KOG4237|consen  245 LCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGL  324 (498)
T ss_pred             hhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccc
Confidence            00   00  00     0011233445668999999999999999999999999999999999999987777789999999


Q ss_pred             cEEeCCCCcCCCCCCCCccccCccceeecccCcce
Q 039161          218 ESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLW  252 (333)
Q Consensus       218 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~  252 (333)
                      +.|+|.+|+|+..-|..|..+.+|..|++-.|++.
T Consensus       325 ~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  325 KTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             eeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            99999999999889999999999999999999986

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.81  E-value=1.3e-22  Score=170.14  Aligned_cols=219  Identities=23%  Similarity=0.365  Sum_probs=137.2

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      .+++|++.+|++. ..|.+++.+..+..|+.++|++. ++|..+..+.+++.++.+.|.+. ..++.++.+..++.++..
T Consensus        69 ~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~  145 (565)
T KOG0472|consen   69 CLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDAT  145 (565)
T ss_pred             ceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhcc
Confidence            4566666666665 44555666666666666666666 56666666666777777776665 455566666667777777


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc-ccccccccCceEEeecCcchhhhh
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGRAFCDESITVAMKGHDFQLQN  164 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  164 (333)
                      +|+++..+++.   ..+.++..+++.+|.++.. |..... ++.|++++...|.- .++                .. ..
T Consensus       146 ~N~i~slp~~~---~~~~~l~~l~~~~n~l~~l-~~~~i~-m~~L~~ld~~~N~L~tlP----------------~~-lg  203 (565)
T KOG0472|consen  146 NNQISSLPEDM---VNLSKLSKLDLEGNKLKAL-PENHIA-MKRLKHLDCNSNLLETLP----------------PE-LG  203 (565)
T ss_pred             ccccccCchHH---HHHHHHHHhhccccchhhC-CHHHHH-HHHHHhcccchhhhhcCC----------------hh-hc
Confidence            77666655443   3455666677777776633 333233 66666666544321 111                11 11


Q ss_pred             hhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccc-cccCCCCcEEeCCCCcCCCCCCCCccccCccce
Q 039161          165 IFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVS-FENMTALESLDLSFNKLDGRIPEQLLSVTALAL  243 (333)
Q Consensus       165 ~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  243 (333)
                      .+.+|..|++.+|++. .+| .|..+..|++++++.|++. .+|.. ...++++..|||.+|+++ ..|+.+.-+++|.+
T Consensus       204 ~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~r  279 (565)
T KOG0472|consen  204 GLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLER  279 (565)
T ss_pred             chhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhh
Confidence            1556666777777776 666 4677777777777777776 34433 346777777777777777 67777777777777


Q ss_pred             eecccCccee
Q 039161          244 LNLSYNRLWG  253 (333)
Q Consensus       244 L~l~~N~l~~  253 (333)
                      ||+++|.|++
T Consensus       280 LDlSNN~is~  289 (565)
T KOG0472|consen  280 LDLSNNDISS  289 (565)
T ss_pred             hcccCCcccc
Confidence            7777777763

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.80  E-value=3.8e-21  Score=161.32  Aligned_cols=264  Identities=25%  Similarity=0.363  Sum_probs=172.7

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      .|++|.++.|++...+.+...+++++..|||..|+++ ..|+.++.+.+|++||+++|.|+ ..|.+++++ .|+.|.+.
T Consensus       229 ~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~le  305 (565)
T KOG0472|consen  229 LLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALE  305 (565)
T ss_pred             HHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhc
Confidence            4677777777777444455568889999999999998 78888888999999999999998 577788888 89999998


Q ss_pred             cCcCCC-------------------------CC-------------CCCCC-cccCCcccEEEcCCCcccccCCcccccC
Q 039161           86 SNQFDC-------------------------PP-------------CNSNI-TFPFQALRIIDLSHTEFTGFLPRRIFPS  126 (333)
Q Consensus        86 ~n~l~~-------------------------~~-------------~~~~~-~~~l~~L~~L~ls~n~l~~~~~~~~~~~  126 (333)
                      +|.+..                         ..             ...+. ....-+.+.|+++.-+++ .+|+++|..
T Consensus       306 GNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea  384 (565)
T KOG0472|consen  306 GNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEA  384 (565)
T ss_pred             CCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHH
Confidence            887621                         00             00000 011335667777777777 677766654


Q ss_pred             hHH--hhhhcccCcc-ccccc-------ccccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEE
Q 039161          127 MEA--MKNVDEQGRL-EYMGR-------AFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVL  196 (333)
Q Consensus       127 l~~--L~~l~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L  196 (333)
                      .++  +..++++.|. ..++.       ....-.......++.......+++|..|++++|-+. .+|..++.+..|+.|
T Consensus       385 ~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~L  463 (565)
T KOG0472|consen  385 AKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTL  463 (565)
T ss_pred             hhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhhee
Confidence            431  2223333321 00100       000000011112334445555788888999888887 778888888889999


Q ss_pred             EccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccccccCCC
Q 039161          197 NLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLC  276 (333)
Q Consensus       197 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~  276 (333)
                      +++.|+|. .+|....-+..++.+-.++|++....++.+..+.+|..||+.+|.+. +||..     +..........+.
T Consensus       464 nlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~-----LgnmtnL~hLeL~  536 (565)
T KOG0472|consen  464 NLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPI-----LGNMTNLRHLELD  536 (565)
T ss_pred             cccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChh-----hccccceeEEEec
Confidence            99998887 66777766666777766777777666666777777777888887776 55553     2333344555667


Q ss_pred             CCCCC
Q 039161          277 GEPLT  281 (333)
Q Consensus       277 g~~~~  281 (333)
                      |||+.
T Consensus       537 gNpfr  541 (565)
T KOG0472|consen  537 GNPFR  541 (565)
T ss_pred             CCccC
Confidence            77765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=9.9e-19  Score=164.72  Aligned_cols=208  Identities=25%  Similarity=0.415  Sum_probs=146.5

Q ss_pred             CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161            3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL   82 (333)
Q Consensus         3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   82 (333)
                      +|++++.|+|++|.++. +|..+.  .+|++|++++|+++ .+|..+.  .+|+.|+|++|.+. .+|..+.  .+|+.|
T Consensus       197 Ip~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L  267 (754)
T PRK15370        197 IPEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSL  267 (754)
T ss_pred             cccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEE
Confidence            45678899999998884 444443  58999999999888 5666554  37899999999988 5666554  579999


Q ss_pred             EcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccc-cccccccCceEEeecCcchh
Q 039161           83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEY-MGRAFCDESITVAMKGHDFQ  161 (333)
Q Consensus        83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  161 (333)
                      ++++|+++..+. .+    .++|+.|++++|+++ .+|..+.   .+|+.+++.+|... ++                  
T Consensus       268 ~Ls~N~L~~LP~-~l----~~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~LP------------------  320 (754)
T PRK15370        268 DLFHNKISCLPE-NL----PEELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLTALP------------------  320 (754)
T ss_pred             ECcCCccCcccc-cc----CCCCcEEECCCCccc-cCcccch---hhHHHHHhcCCccccCC------------------
Confidence            999998886543 22    257999999999888 4554432   35666666554211 10                  


Q ss_pred             hhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCcc
Q 039161          162 LQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTAL  241 (333)
Q Consensus       162 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  241 (333)
                       ...+++|+.|++++|.++ .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|.++ .+|..+.  ..|
T Consensus       321 -~~l~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL  390 (754)
T PRK15370        321 -ETLPPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AAL  390 (754)
T ss_pred             -ccccccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHH
Confidence             011457888888888888 4565543  68888888888887 4565543  67888888888888 4555443  368


Q ss_pred             ceeecccCcceecCCC
Q 039161          242 ALLNLSYNRLWGRIPR  257 (333)
Q Consensus       242 ~~L~l~~N~l~~~~p~  257 (333)
                      +.|++++|+++ .+|.
T Consensus       391 ~~LdLs~N~L~-~LP~  405 (754)
T PRK15370        391 QIMQASRNNLV-RLPE  405 (754)
T ss_pred             HHHhhccCCcc-cCch
Confidence            88888888887 5554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.76  E-value=2.2e-18  Score=161.64  Aligned_cols=83  Identities=30%  Similarity=0.357  Sum_probs=61.5

Q ss_pred             hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161          166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN  245 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  245 (333)
                      +.+|+.|++++|.++ .+|..   .++|+.|++++|++++ +|...   .+|+.|++++|+++ .+|..+..+++|+.++
T Consensus       381 ~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~Ld  451 (788)
T PRK15387        381 PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVN  451 (788)
T ss_pred             ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEE
Confidence            456788888888887 44442   3578888888888874 45432   46778888888888 6788888888888888


Q ss_pred             cccCcceecCCC
Q 039161          246 LSYNRLWGRIPR  257 (333)
Q Consensus       246 l~~N~l~~~~p~  257 (333)
                      +++|++++.+|.
T Consensus       452 Ls~N~Ls~~~~~  463 (788)
T PRK15387        452 LEGNPLSERTLQ  463 (788)
T ss_pred             CCCCCCCchHHH
Confidence            888888876665

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.76  E-value=3.7e-20  Score=169.90  Aligned_cols=241  Identities=23%  Similarity=0.334  Sum_probs=133.6

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      +++.|+...|.++...+.  ..-.+|+++++++|+++ .+|+.+..+.+|+.++..+|+++ .+|..+..+.+|+.|.+.
T Consensus       220 ~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~  295 (1081)
T KOG0618|consen  220 SLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAA  295 (1081)
T ss_pred             chheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhh
Confidence            455555555555522221  12345666666666666 34455566666666666666664 455555555666666666


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHH-hhhhcccCcccccccccccC---------ceEEee
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEA-MKNVDEQGRLEYMGRAFCDE---------SITVAM  155 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~-L~~l~~~~~~~~~~~~~~~~---------~~~~~~  155 (333)
                      .|.+..+++.-   .+..+|++|++..|++. .+|...+..... +..++...+...........         ...-..
T Consensus       296 ~nel~yip~~l---e~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L  371 (1081)
T KOG0618|consen  296 YNELEYIPPFL---EGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL  371 (1081)
T ss_pred             hhhhhhCCCcc---cccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc
Confidence            66655554332   34556666666666655 444333322222 33333222110000000000         000001


Q ss_pred             cCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCc
Q 039161          156 KGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQL  235 (333)
Q Consensus       156 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  235 (333)
                      ..........+..|+.|+|++|++.......+.++..|++|+||+|.++ .+|..+..+..|++|...+|++. ..| .+
T Consensus       372 td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~  448 (1081)
T KOG0618|consen  372 TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-EL  448 (1081)
T ss_pred             cccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hh
Confidence            1112222233567788888888777444556777778888888888887 56677777777777777777777 666 56


Q ss_pred             cccCccceeecccCccee-cCCC
Q 039161          236 LSVTALALLNLSYNRLWG-RIPR  257 (333)
Q Consensus       236 ~~l~~L~~L~l~~N~l~~-~~p~  257 (333)
                      ..++.|+.+|++.|+++. .+|.
T Consensus       449 ~~l~qL~~lDlS~N~L~~~~l~~  471 (1081)
T KOG0618|consen  449 AQLPQLKVLDLSCNNLSEVTLPE  471 (1081)
T ss_pred             hhcCcceEEecccchhhhhhhhh
Confidence            778888999999998863 3443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.75  E-value=1.4e-17  Score=156.30  Aligned_cols=77  Identities=34%  Similarity=0.417  Sum_probs=41.1

Q ss_pred             CCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCcccccccc
Q 039161          192 SLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIG  271 (333)
Q Consensus       192 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~  271 (333)
                      +|+.|++++|++++ +|..   .++|+.|++++|.++ .+|..   ..+|+.|++++|+++ .+|..     +.......
T Consensus       383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~s-----l~~L~~L~  448 (788)
T PRK15387        383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPES-----LIHLSSET  448 (788)
T ss_pred             ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChH-----HhhccCCC
Confidence            45555555555553 3322   245666666666666 34432   234566677777765 55542     22223334


Q ss_pred             ccCCCCCCCCC
Q 039161          272 NIRLCGEPLTV  282 (333)
Q Consensus       272 ~~~l~g~~~~~  282 (333)
                      .+.+.+|+++.
T Consensus       449 ~LdLs~N~Ls~  459 (788)
T PRK15387        449 TVNLEGNPLSE  459 (788)
T ss_pred             eEECCCCCCCc
Confidence            55677777764

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.74  E-value=4.9e-20  Score=137.66  Aligned_cols=185  Identities=28%  Similarity=0.465  Sum_probs=149.9

Q ss_pred             hhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCc
Q 039161           25 FANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQA  104 (333)
Q Consensus        25 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~  104 (333)
                      +.++.+.+.|.||+|+++ .+|..+..+.+|+.|++++|+++ ..|..++.+++|+.|+++-|++...+.+ |  +.++.
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprg-f--gs~p~  103 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRG-F--GSFPA  103 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccc-c--CCCch
Confidence            346889999999999999 56667899999999999999998 6888999999999999999998866543 4  78999


Q ss_pred             ccEEEcCCCccccc-CCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCccc
Q 039161          105 LRIIDLSHTEFTGF-LPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEI  183 (333)
Q Consensus       105 L~~L~ls~n~l~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~  183 (333)
                      |+.||++.|++... +|..+| .                                       +..|+.|++++|.+. .+
T Consensus       104 levldltynnl~e~~lpgnff-~---------------------------------------m~tlralyl~dndfe-~l  142 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENSLPGNFF-Y---------------------------------------MTTLRALYLGDNDFE-IL  142 (264)
T ss_pred             hhhhhccccccccccCCcchh-H---------------------------------------HHHHHHHHhcCCCcc-cC
Confidence            99999999988643 343322 1                                       455677788899998 78


Q ss_pred             hhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCc---cceeecccCcceecCCC
Q 039161          184 SEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA---LALLNLSYNRLWGRIPR  257 (333)
Q Consensus       184 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~---L~~L~l~~N~l~~~~p~  257 (333)
                      |..++++++|+.|.+.+|.+- ..|..++.++.|++|.+.+|+++ .+|..+.++.-   -+.+.+.+|.+...|..
T Consensus       143 p~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae  217 (264)
T KOG0617|consen  143 PPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE  217 (264)
T ss_pred             ChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence            888999999999999999998 78999999999999999999999 66665555432   24566777877544433

>PLN03210 Resistant to P

Probab=99.73  E-value=4.6e-17  Score=162.90  Aligned_cols=226  Identities=19%  Similarity=0.221  Sum_probs=136.9

Q ss_pred             cCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEE
Q 039161            4 STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILV   83 (333)
Q Consensus         4 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   83 (333)
                      |.+|+.|.+.++.++ ..|..| ...+|++|++++|++. .++..+..+++|+.|+|+++.....+| .+..+++|++|+
T Consensus       588 p~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~  663 (1153)
T PLN03210        588 PPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLK  663 (1153)
T ss_pred             CcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEE
Confidence            445667777766665 444444 3567777777777766 455566667777777777665433444 356667777777


Q ss_pred             cccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhh
Q 039161           84 LRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQ  163 (333)
Q Consensus        84 L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (333)
                      +++|......|..+  ..+++|+.|++++|.....+|..+  .+++|+.+.+.++.. +.                 .+.
T Consensus       664 L~~c~~L~~lp~si--~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~-L~-----------------~~p  721 (1153)
T PLN03210        664 LSDCSSLVELPSSI--QYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSR-LK-----------------SFP  721 (1153)
T ss_pred             ecCCCCccccchhh--hccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCC-cc-----------------ccc
Confidence            77665444444444  566777777777664444555432  455666665554321 00                 001


Q ss_pred             hhhhccceEEccCcccCccchh------------------------------hhhCCCCCCEEEccCCcCCCCCcccccc
Q 039161          164 NIFVMFRAMDFSSNRFHGEISE------------------------------VLGNFKSLKVLNLSHNSLTGNIPVSFEN  213 (333)
Q Consensus       164 ~~~~~L~~L~ls~n~l~~~~~~------------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  213 (333)
                      ....+|+.|++++|.+. .+|.                              ....+++|+.|++++|.....+|..+++
T Consensus       722 ~~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~  800 (1153)
T PLN03210        722 DISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQN  800 (1153)
T ss_pred             cccCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhC
Confidence            11234444444444443 2221                              1223457888888888777778888888


Q ss_pred             CCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCC
Q 039161          214 MTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPR  257 (333)
Q Consensus       214 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~  257 (333)
                      +++|+.|++++|.....+|... .+++|+.|++++|.....+|.
T Consensus       801 L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~  843 (1153)
T PLN03210        801 LHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD  843 (1153)
T ss_pred             CCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc
Confidence            8889999988875444667655 678888888888765445553

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.72  E-value=2.2e-16  Score=158.04  Aligned_cols=235  Identities=15%  Similarity=0.176  Sum_probs=149.1

Q ss_pred             cCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEE
Q 039161            4 STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILV   83 (333)
Q Consensus         4 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   83 (333)
                      |++|+.|++++|.+. .++..+..+++|++|+|+++...+.+|. +..+++|+.|+|++|.....+|..+..+++|+.|+
T Consensus       610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence            357999999999987 5667778899999999998765556774 78889999999999876667888899999999999


Q ss_pred             cccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcc-ccccccccc-CceEE--------
Q 039161           84 LRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRL-EYMGRAFCD-ESITV--------  153 (333)
Q Consensus        84 L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~-~~~~~~~~~-~~~~~--------  153 (333)
                      +++|......|..   ..+++|+.|++++|.....+|..    ..+|+.+++..+. ..++..... .....        
T Consensus       688 L~~c~~L~~Lp~~---i~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~  760 (1153)
T PLN03210        688 MSRCENLEILPTG---INLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSE  760 (1153)
T ss_pred             CCCCCCcCccCCc---CCCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccccccccccccccccccccccchh
Confidence            9986533333322   25778888888887655454431    2344455444432 111100000 00000        


Q ss_pred             ----eecCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCC-------------
Q 039161          154 ----AMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTA-------------  216 (333)
Q Consensus       154 ----~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-------------  216 (333)
                          ............+++|+.|++++|.....+|..++++++|+.|++++|...+.+|..+ .+++             
T Consensus       761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~  839 (1153)
T PLN03210        761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR  839 (1153)
T ss_pred             hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccc
Confidence                0000011111224678888888887666788888888888888888875433455443 3444             


Q ss_pred             --------CcEEeCCCCcCCCCCCCCccccCccceeecccC
Q 039161          217 --------LESLDLSFNKLDGRIPEQLLSVTALALLNLSYN  249 (333)
Q Consensus       217 --------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N  249 (333)
                              |+.|+|++|.++ .+|..+..+++|+.|++++|
T Consensus       840 ~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C  879 (1153)
T PLN03210        840 TFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC  879 (1153)
T ss_pred             cccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence                    445555555555 45555666666666766663

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.70  E-value=3.5e-17  Score=154.33  Aligned_cols=205  Identities=23%  Similarity=0.343  Sum_probs=155.4

Q ss_pred             CcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEc
Q 039161            5 TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVL   84 (333)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   84 (333)
                      ++|++|++++|+++. +|..+.  .+|+.|+|++|.++ .+|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|++
T Consensus       220 ~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~L  290 (754)
T PRK15370        220 GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSV  290 (754)
T ss_pred             cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEEC
Confidence            479999999999984 565553  47999999999998 6777664  48999999999998 4676554  58999999


Q ss_pred             ccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhh
Q 039161           85 RSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQN  164 (333)
Q Consensus        85 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (333)
                      ++|+++..+.. +    .++|+.|++++|.++ .+|..+.   ++|+.|.+.++.-.               ..+.   .
T Consensus       291 s~N~Lt~LP~~-l----p~sL~~L~Ls~N~Lt-~LP~~l~---~sL~~L~Ls~N~Lt---------------~LP~---~  343 (754)
T PRK15370        291 YDNSIRTLPAH-L----PSGITHLNVQSNSLT-ALPETLP---PGLKTLEAGENALT---------------SLPA---S  343 (754)
T ss_pred             CCCccccCccc-c----hhhHHHHHhcCCccc-cCCcccc---ccceeccccCCccc---------------cCCh---h
Confidence            99999876532 1    257999999999998 4665433   45666666554210               0111   1


Q ss_pred             hhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCc----cccCc
Q 039161          165 IFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQL----LSVTA  240 (333)
Q Consensus       165 ~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~~  240 (333)
                      .+++|+.|++++|+++ .+|..+.  +.|+.|++++|+++. +|..+.  ..|+.|++++|++. .+|..+    ...+.
T Consensus       344 l~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~  416 (754)
T PRK15370        344 LPPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQ  416 (754)
T ss_pred             hcCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCC
Confidence            2468999999999998 5676553  689999999999994 555554  46999999999998 556544    34577


Q ss_pred             cceeecccCcce
Q 039161          241 LALLNLSYNRLW  252 (333)
Q Consensus       241 L~~L~l~~N~l~  252 (333)
                      +..+++.+|+++
T Consensus       417 l~~L~L~~Npls  428 (754)
T PRK15370        417 PTRIIVEYNPFS  428 (754)
T ss_pred             ccEEEeeCCCcc
Confidence            899999999996

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.70  E-value=3.1e-19  Score=133.41  Aligned_cols=179  Identities=24%  Similarity=0.388  Sum_probs=146.3

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      +++.|.|++|.++.. |..++.+.+|+.|++++|+++ .+|.+++.+++|+.|++.-|++. ..|..|+.++.|+.||++
T Consensus        34 ~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt  110 (264)
T KOG0617|consen   34 NITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT  110 (264)
T ss_pred             hhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence            578899999999954 555889999999999999999 78889999999999999999998 789999999999999999


Q ss_pred             cCcCCCC-CCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhh
Q 039161           86 SNQFDCP-PCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQN  164 (333)
Q Consensus        86 ~n~l~~~-~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (333)
                      +|++... .|+.|  ..++.|+.|+++.|.+. .+|..+..                                       
T Consensus       111 ynnl~e~~lpgnf--f~m~tlralyl~dndfe-~lp~dvg~---------------------------------------  148 (264)
T KOG0617|consen  111 YNNLNENSLPGNF--FYMTTLRALYLGDNDFE-ILPPDVGK---------------------------------------  148 (264)
T ss_pred             ccccccccCCcch--hHHHHHHHHHhcCCCcc-cCChhhhh---------------------------------------
Confidence            9998753 45555  67889999999999988 66654221                                       


Q ss_pred             hhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCC---CCcEEeCCCCcCCCCCC
Q 039161          165 IFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMT---ALESLDLSFNKLDGRIP  232 (333)
Q Consensus       165 ~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---~L~~L~Ls~n~l~~~~~  232 (333)
                       +.+|+.|.+.+|.+- .+|..++.++.|++|++.+|+++ .+|..++.+.   +-....+.+|.+...+.
T Consensus       149 -lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIa  216 (264)
T KOG0617|consen  149 -LTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIA  216 (264)
T ss_pred             -hcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHH
Confidence             678899999999988 88999999999999999999999 5665555432   22334555665554333

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.69  E-value=1.6e-18  Score=151.00  Aligned_cols=233  Identities=23%  Similarity=0.221  Sum_probs=145.7

Q ss_pred             cccEEECcCCccccc----cchhhhCCCCccEEECCCCcCcC------CCChhhcCCCCCcEEEccCCcCCCcccccccC
Q 039161            6 ELITLHLENNSLEGH----IHNTFANASHLRSLDLYSNKLEG------PLPRSLAKYIKLEVVNVENNMISDSFPCWMGS   75 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~------~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   75 (333)
                      .|++|+++++.++..    ++..+...+.+++|+++++.+.+      .++..+..+++|+.|++++|.+.+..+..+..
T Consensus        24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  103 (319)
T cd00116          24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES  103 (319)
T ss_pred             hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence            588999999988532    44556677889999999988762      23446677889999999999987655555555


Q ss_pred             CCC---CCEEEcccCcCCCCCCCCC--CcccC-CcccEEEcCCCcccccCCccc---ccChHHhhhhcccCccccccccc
Q 039161           76 LSE---LKILVLRSNQFDCPPCNSN--ITFPF-QALRIIDLSHTEFTGFLPRRI---FPSMEAMKNVDEQGRLEYMGRAF  146 (333)
Q Consensus        76 l~~---L~~L~L~~n~l~~~~~~~~--~~~~l-~~L~~L~ls~n~l~~~~~~~~---~~~l~~L~~l~~~~~~~~~~~~~  146 (333)
                      +.+   |++|++++|++.+......  ....+ ++|+.|++++|.+++.....+   +..+..|+.+++.++.-.-    
T Consensus       104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~----  179 (319)
T cd00116         104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD----  179 (319)
T ss_pred             HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch----
Confidence            554   9999999998764221111  01334 789999999998885322221   2223345555544331000    


Q ss_pred             ccCceEEeecCcchhhh---hhhhccceEEccCcccCcc----chhhhhCCCCCCEEEccCCcCCCCCccccc-----cC
Q 039161          147 CDESITVAMKGHDFQLQ---NIFVMFRAMDFSSNRFHGE----ISEVLGNFKSLKVLNLSHNSLTGNIPVSFE-----NM  214 (333)
Q Consensus       147 ~~~~~~~~~~~~~~~~~---~~~~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l  214 (333)
                                .....+.   ...+.|+.|++++|.+++.    ++..+..+++|++|++++|.+++.....+.     ..
T Consensus       180 ----------~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~  249 (319)
T cd00116         180 ----------AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPN  249 (319)
T ss_pred             ----------HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccC
Confidence                      0000111   1134788888888877633    233455677788888888877753222222     13


Q ss_pred             CCCcEEeCCCCcCCC----CCCCCccccCccceeecccCcce
Q 039161          215 TALESLDLSFNKLDG----RIPEQLLSVTALALLNLSYNRLW  252 (333)
Q Consensus       215 ~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~l~~N~l~  252 (333)
                      +.|++|++++|.+++    .+...+..+++|+.+++++|.++
T Consensus       250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            678888888887763    12334445567888888888876

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.69  E-value=1.7e-18  Score=159.08  Aligned_cols=243  Identities=23%  Similarity=0.311  Sum_probs=182.3

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      .|+++....|++....    -.-++|+.|+.++|.++...+.  ..-.+|++++++.|+++ .+|+|++.+.+|+.++..
T Consensus       200 ~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n  272 (1081)
T KOG0618|consen  200 NLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNAN  272 (1081)
T ss_pred             chhhhhhhhcccceEE----ecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEeccc
Confidence            5666666666665322    1347899999999999833332  22358999999999999 577999999999999999


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcc-ccccccccc---------CceEEee
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRL-EYMGRAFCD---------ESITVAM  155 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~-~~~~~~~~~---------~~~~~~~  155 (333)
                      +|++...+...   ...++|+.|.+..|.+. .+|.. ...++.|+.|++..+. ...+...+.         .......
T Consensus       273 ~N~l~~lp~ri---~~~~~L~~l~~~~nel~-yip~~-le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l  347 (1081)
T KOG0618|consen  273 HNRLVALPLRI---SRITSLVSLSAAYNELE-YIPPF-LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKL  347 (1081)
T ss_pred             chhHHhhHHHH---hhhhhHHHHHhhhhhhh-hCCCc-ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccc
Confidence            99997665444   56789999999999998 45543 5568888888876543 333321110         0000111


Q ss_pred             cCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCc
Q 039161          156 KGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQL  235 (333)
Q Consensus       156 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  235 (333)
                      ...+..-....+.|+.|.+.+|.+++..-..+..+++|+.|+|++|++.......+.+++.|++|+||+|+++ .+|..+
T Consensus       348 ~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tv  426 (1081)
T KOG0618|consen  348 STLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTV  426 (1081)
T ss_pred             cccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHH
Confidence            1112222233678999999999999877777889999999999999999777778899999999999999999 788999


Q ss_pred             cccCccceeecccCcceecCCCCCccC
Q 039161          236 LSVTALALLNLSYNRLWGRIPRGNQFN  262 (333)
Q Consensus       236 ~~l~~L~~L~l~~N~l~~~~p~~~~~~  262 (333)
                      ..+..|+.|...+|.+. ..|...++.
T Consensus       427 a~~~~L~tL~ahsN~l~-~fPe~~~l~  452 (1081)
T KOG0618|consen  427 ANLGRLHTLRAHSNQLL-SFPELAQLP  452 (1081)
T ss_pred             HhhhhhHHHhhcCCcee-echhhhhcC
Confidence            99999999999999998 667544443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.66  E-value=1.1e-17  Score=145.89  Aligned_cols=235  Identities=20%  Similarity=0.208  Sum_probs=158.3

Q ss_pred             cccEEECcCCccc------cccchhhhCCCCccEEECCCCcCcCCCChhhcCCCC---CcEEEccCCcCCCc----cccc
Q 039161            6 ELITLHLENNSLE------GHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIK---LEVVNVENNMISDS----FPCW   72 (333)
Q Consensus         6 ~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~---L~~L~L~~n~l~~~----~~~~   72 (333)
                      .+++++++++.+.      ...+..+..+++|++|++++|.+.+..+..+..+..   |++|++++|++++.    +...
T Consensus        52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~  131 (319)
T cd00116          52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG  131 (319)
T ss_pred             CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence            6899999998876      233456778899999999999998666666666555   99999999998742    2334


Q ss_pred             ccCC-CCCCEEEcccCcCCCCCCCCC--CcccCCcccEEEcCCCcccccCCcccccCh---HHhhhhcccCccccccccc
Q 039161           73 MGSL-SELKILVLRSNQFDCPPCNSN--ITFPFQALRIIDLSHTEFTGFLPRRIFPSM---EAMKNVDEQGRLEYMGRAF  146 (333)
Q Consensus        73 ~~~l-~~L~~L~L~~n~l~~~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l---~~L~~l~~~~~~~~~~~~~  146 (333)
                      +..+ ++|+.|++++|.+++.....+  .+..+++|++|++++|.+++.....+...+   +.|+.+++.++...-.  .
T Consensus       132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~--~  209 (319)
T cd00116         132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE--G  209 (319)
T ss_pred             HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH--H
Confidence            5566 899999999999885322111  124567899999999988853222222223   3666666655421000  0


Q ss_pred             ccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhhhC-----CCCCCEEEccCCcCCCC----CccccccCCCC
Q 039161          147 CDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGN-----FKSLKVLNLSHNSLTGN----IPVSFENMTAL  217 (333)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L  217 (333)
                               ..........+++|+.|++++|.+++.....+..     .+.|++|++++|.++..    +...+..+++|
T Consensus       210 ---------~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L  280 (319)
T cd00116         210 ---------ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESL  280 (319)
T ss_pred             ---------HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCc
Confidence                     0000111223678999999999998643333322     37999999999999732    33455667899


Q ss_pred             cEEeCCCCcCCCC----CCCCcccc-CccceeecccCcc
Q 039161          218 ESLDLSFNKLDGR----IPEQLLSV-TALALLNLSYNRL  251 (333)
Q Consensus       218 ~~L~Ls~n~l~~~----~~~~~~~l-~~L~~L~l~~N~l  251 (333)
                      +.+++++|.++..    ....+... +.++.+++.+|++
T Consensus       281 ~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         281 LELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             cEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            9999999999864    33334444 6788888888764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03150 hypothetical protein; Provisional

Probab=99.58  E-value=4.5e-15  Score=139.27  Aligned_cols=117  Identities=36%  Similarity=0.573  Sum_probs=101.3

Q ss_pred             ccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecc
Q 039161          168 MFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLS  247 (333)
Q Consensus       168 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~  247 (333)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+++.+|..+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcceecCCCCCcc--CCccccccccccCCCCCCCCCCC
Q 039161          248 YNRLWGRIPRGNQF--NTFQNDSYIGNIRLCGEPLTVRC  284 (333)
Q Consensus       248 ~N~l~~~~p~~~~~--~~~~~~~~~~~~~l~g~~~~~~C  284 (333)
                      +|.++|.+|....-  .......+.+|..+||.|....|
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C  537 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC  537 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence            99999999976432  12234456677777776544444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.39  E-value=5.1e-13  Score=119.88  Aligned_cols=197  Identities=32%  Similarity=0.434  Sum_probs=122.1

Q ss_pred             EEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCC-CCcEEEccCCcCCCcccccccCCCCCCEEEcccC
Q 039161            9 TLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYI-KLEVVNVENNMISDSFPCWMGSLSELKILVLRSN   87 (333)
Q Consensus         9 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   87 (333)
                      .+++..+.+... ...+...+.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            356666665322 223445577888888888887 4555555553 7888888888877 44456777888888888888


Q ss_pred             cCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhh
Q 039161           88 QFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFV  167 (333)
Q Consensus        88 ~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (333)
                      ++...++..   ...+.|+.|++++|.++ .+|... ..                                       +.
T Consensus       174 ~l~~l~~~~---~~~~~L~~L~ls~N~i~-~l~~~~-~~---------------------------------------~~  209 (394)
T COG4886         174 DLSDLPKLL---SNLSNLNNLDLSGNKIS-DLPPEI-EL---------------------------------------LS  209 (394)
T ss_pred             hhhhhhhhh---hhhhhhhheeccCCccc-cCchhh-hh---------------------------------------hh
Confidence            887766442   25677888888888877 444321 11                                       33


Q ss_pred             ccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecc
Q 039161          168 MFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLS  247 (333)
Q Consensus       168 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~  247 (333)
                      .|+++.+++|.+. ..+..+..++++..+.+++|++. ..+..++.++.++.|++++|.++. ++. +....+++.++++
T Consensus       210 ~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s  285 (394)
T COG4886         210 ALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLS  285 (394)
T ss_pred             hhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCEEecc
Confidence            4556666666433 34444556666666666666665 334555666666666666666663 322 5566666666666


Q ss_pred             cCcceecCC
Q 039161          248 YNRLWGRIP  256 (333)
Q Consensus       248 ~N~l~~~~p  256 (333)
                      +|.++...|
T Consensus       286 ~n~~~~~~~  294 (394)
T COG4886         286 GNSLSNALP  294 (394)
T ss_pred             Cccccccch
Confidence            666654333

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.39  E-value=1.5e-14  Score=127.13  Aligned_cols=88  Identities=26%  Similarity=0.349  Sum_probs=48.8

Q ss_pred             CCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccE
Q 039161           28 ASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRI  107 (333)
Q Consensus        28 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~  107 (333)
                      +..-...|++.|++. ++|..++.+..|+.+.|..|.+. .+|..+..+..|.+++++.|+++..+....    .--|+.
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC----~lpLkv  147 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLC----DLPLKV  147 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChhhh----cCccee
Confidence            333445566666665 45555666666666666666655 455556666666666666666655544321    123555


Q ss_pred             EEcCCCcccccCCcc
Q 039161          108 IDLSHTEFTGFLPRR  122 (333)
Q Consensus       108 L~ls~n~l~~~~~~~  122 (333)
                      |-+++|+++ .+|..
T Consensus       148 li~sNNkl~-~lp~~  161 (722)
T KOG0532|consen  148 LIVSNNKLT-SLPEE  161 (722)
T ss_pred             EEEecCccc-cCCcc
Confidence            566666665 44443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.38  E-value=1e-14  Score=128.15  Aligned_cols=192  Identities=23%  Similarity=0.383  Sum_probs=151.1

Q ss_pred             ccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEccc
Q 039161            7 LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRS   86 (333)
Q Consensus         7 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   86 (333)
                      ....||+.|.+. ++|..+..+..|+.+.|.+|.+. .+|.++..+..|.+|||+.|+++ ..|..++.++ |+.|.+++
T Consensus        77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN  152 (722)
T KOG0532|consen   77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN  152 (722)
T ss_pred             hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence            456788999998 77877888889999999999998 78889999999999999999998 6777777766 89999999


Q ss_pred             CcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhh
Q 039161           87 NQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIF  166 (333)
Q Consensus        87 n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (333)
                      |+++..+...   +....|..||.+.|.+. .+|.. ...                                       +
T Consensus       153 Nkl~~lp~~i---g~~~tl~~ld~s~nei~-slpsq-l~~---------------------------------------l  188 (722)
T KOG0532|consen  153 NKLTSLPEEI---GLLPTLAHLDVSKNEIQ-SLPSQ-LGY---------------------------------------L  188 (722)
T ss_pred             CccccCCccc---ccchhHHHhhhhhhhhh-hchHH-hhh---------------------------------------H
Confidence            9998777654   46788999999999887 44433 122                                       4


Q ss_pred             hccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCc---cce
Q 039161          167 VMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA---LAL  243 (333)
Q Consensus       167 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~---L~~  243 (333)
                      .+|+.|.++.|++. .+|..+..+ .|..||++.|+++ .+|..|..|..|++|.|.+|.+. ..|..+...-.   .++
T Consensus       189 ~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKy  264 (722)
T KOG0532|consen  189 TSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKY  264 (722)
T ss_pred             HHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeee
Confidence            55666777888887 666667754 4899999999999 78999999999999999999998 55555443322   355


Q ss_pred             eecccCc
Q 039161          244 LNLSYNR  250 (333)
Q Consensus       244 L~l~~N~  250 (333)
                      |+..-++
T Consensus       265 L~~qA~q  271 (722)
T KOG0532|consen  265 LSTQACQ  271 (722)
T ss_pred             ecchhcc
Confidence            6666553

>PLN03150 hypothetical protein; Provisional

Probab=99.31  E-value=7.5e-12  Score=117.72  Aligned_cols=111  Identities=26%  Similarity=0.338  Sum_probs=88.4

Q ss_pred             ccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEccc
Q 039161            7 LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRS   86 (333)
Q Consensus         7 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   86 (333)
                      ++.|+|++|.+.+..|..+..+++|+.|+|++|.+++.+|..+..+++|+.|+|++|.+++.+|..+..+++|++|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            67788888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CcCCCCCCCCCCcccCCcccEEEcCCCccccc
Q 039161           87 NQFDCPPCNSNITFPFQALRIIDLSHTEFTGF  118 (333)
Q Consensus        87 n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~  118 (333)
                      |.+++..|..+. ....++..+++.+|...+.
T Consensus       500 N~l~g~iP~~l~-~~~~~~~~l~~~~N~~lc~  530 (623)
T PLN03150        500 NSLSGRVPAALG-GRLLHRASFNFTDNAGLCG  530 (623)
T ss_pred             CcccccCChHHh-hccccCceEEecCCccccC
Confidence            888887776541 1234566778887765433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.25  E-value=7.6e-12  Score=97.29  Aligned_cols=105  Identities=23%  Similarity=0.278  Sum_probs=40.3

Q ss_pred             cccEEECcCCccccccchhhh-CCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccc-cCCCCCCEEE
Q 039161            6 ELITLHLENNSLEGHIHNTFA-NASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWM-GSLSELKILV   83 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~   83 (333)
                      .+++|+|.+|.|+.+.  .++ .+.+|+.|++++|.|+. +. .+..++.|++|++++|+|+.. ...+ ..+++|++|+
T Consensus        20 ~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred             cccccccccccccccc--chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEE
Confidence            5788999999988542  344 57889999999999984 33 477889999999999999854 3334 3588999999


Q ss_pred             cccCcCCCCCCCCCCcccCCcccEEEcCCCccc
Q 039161           84 LRSNQFDCPPCNSNITFPFQALRIIDLSHTEFT  116 (333)
Q Consensus        84 L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~  116 (333)
                      +++|++.....-. ....+++|+.|++.+|.++
T Consensus        95 L~~N~I~~l~~l~-~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   95 LSNNKISDLNELE-PLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TTS---SCCCCG-GGGG-TT--EEE-TT-GGG
T ss_pred             CcCCcCCChHHhH-HHHcCCCcceeeccCCccc
Confidence            9999987765432 2357889999999999887

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.25  E-value=6.8e-12  Score=112.59  Aligned_cols=180  Identities=28%  Similarity=0.435  Sum_probs=135.2

Q ss_pred             cccEEECcCCccccccchhhhCCC-CccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEc
Q 039161            6 ELITLHLENNSLEGHIHNTFANAS-HLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVL   84 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   84 (333)
                      .++.|++.+|.++.+.+ ....+. +|+.|++++|.+. .+|..+..+++|+.|++++|+++ .+|......++|+.|++
T Consensus       117 ~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         117 NLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             ceeEEecCCcccccCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence            68899999999995544 455563 9999999999998 56667889999999999999999 45655557899999999


Q ss_pred             ccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhh
Q 039161           85 RSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQN  164 (333)
Q Consensus        85 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (333)
                      ++|+++..++..   .....|+++.+++|.+..... . ...                                      
T Consensus       194 s~N~i~~l~~~~---~~~~~L~~l~~~~N~~~~~~~-~-~~~--------------------------------------  230 (394)
T COG4886         194 SGNKISDLPPEI---ELLSALEELDLSNNSIIELLS-S-LSN--------------------------------------  230 (394)
T ss_pred             cCCccccCchhh---hhhhhhhhhhhcCCcceecch-h-hhh--------------------------------------
Confidence            999999887542   234569999999996331211 1 111                                      


Q ss_pred             hhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCc
Q 039161          165 IFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQL  235 (333)
Q Consensus       165 ~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  235 (333)
                       ...+..+.+.+|++. ..+..+..++.++.|++++|.++....  ++.+.+++.|++++|.+....+...
T Consensus       231 -~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         231 -LKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             -cccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence             345555667777766 446667788888899999888884433  7788888999999888876555543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=1.5e-12  Score=111.24  Aligned_cols=209  Identities=18%  Similarity=0.180  Sum_probs=118.8

Q ss_pred             CCCCccEEECCCCcCcCCCC--hhhcCCCCCcEEEccCCcCCCc--ccccccCCCCCCEEEcccCcCCCCCCCCCCcccC
Q 039161           27 NASHLRSLDLYSNKLEGPLP--RSLAKYIKLEVVNVENNMISDS--FPCWMGSLSELKILVLRSNQFDCPPCNSNITFPF  102 (333)
Q Consensus        27 ~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  102 (333)
                      ++..|+...|.++.+. ..+  .....|++++.|||+.|-+...  +......+++|+.|+|+.|++........ ...+
T Consensus       119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~-~~~l  196 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT-TLLL  196 (505)
T ss_pred             hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-hhhh
Confidence            4566666666666654 222  2445566677777776665532  12234456677777777776653332221 1345


Q ss_pred             CcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCcc
Q 039161          103 QALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGE  182 (333)
Q Consensus       103 ~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~  182 (333)
                      +.|+.|.++.|.++......+...+++++.|.+..|....               ........+..|++|||++|++...
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~---------------~~~~~~~i~~~L~~LdLs~N~li~~  261 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL---------------IKATSTKILQTLQELDLSNNNLIDF  261 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc---------------eecchhhhhhHHhhccccCCccccc
Confidence            6677777777766633333344444555555554432000               0001112266788888888877632


Q ss_pred             c-hhhhhCCCCCCEEEccCCcCCCC-Cccc-----cccCCCCcEEeCCCCcCCCC-CCCCccccCccceeecccCcce
Q 039161          183 I-SEVLGNFKSLKVLNLSHNSLTGN-IPVS-----FENMTALESLDLSFNKLDGR-IPEQLLSVTALALLNLSYNRLW  252 (333)
Q Consensus       183 ~-~~~~~~l~~L~~L~Ls~n~l~~~-~~~~-----~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~  252 (333)
                      . -...+.++.|..|+++.+.+..+ .|+.     ...+++|+.|+++.|.|... .-..+..+++|+.+....|.++
T Consensus       262 ~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  262 DQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            2 13466788888888888887743 2222     24567888888888888631 1223445566777777777775

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=1.6e-12  Score=111.10  Aligned_cols=207  Identities=19%  Similarity=0.192  Sum_probs=142.0

Q ss_pred             cccEEECcCCccccccc-hhhhCCCCccEEECCCCcCcCCC--ChhhcCCCCCcEEEccCCcCCCccccc-ccCCCCCCE
Q 039161            6 ELITLHLENNSLEGHIH-NTFANASHLRSLDLYSNKLEGPL--PRSLAKYIKLEVVNVENNMISDSFPCW-MGSLSELKI   81 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~   81 (333)
                      +|+...|.+........ .....+++++.|||++|-+....  -.....+++|+.|+++.|++.-..... -..+++|+.
T Consensus       122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~  201 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ  201 (505)
T ss_pred             hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence            68888888887763322 45667999999999999887332  234467899999999999987432221 125689999


Q ss_pred             EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc-ccccccccCceEEeecCcch
Q 039161           82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGRAFCDESITVAMKGHDF  160 (333)
Q Consensus        82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~  160 (333)
                      |.|+.|.++...-... ...+|+|+.|+++.|....... .-...+..|+.|++.+|.. +..               ..
T Consensus       202 L~l~~CGls~k~V~~~-~~~fPsl~~L~L~~N~~~~~~~-~~~~i~~~L~~LdLs~N~li~~~---------------~~  264 (505)
T KOG3207|consen  202 LVLNSCGLSWKDVQWI-LLTFPSLEVLYLEANEIILIKA-TSTKILQTLQELDLSNNNLIDFD---------------QG  264 (505)
T ss_pred             EEeccCCCCHHHHHHH-HHhCCcHHHhhhhcccccceec-chhhhhhHHhhccccCCcccccc---------------cc
Confidence            9999999874332221 2568999999999995322222 2256677888888877641 111               11


Q ss_pred             hhhhhhhccceEEccCcccCcc-chhh-----hhCCCCCCEEEccCCcCCCC-CccccccCCCCcEEeCCCCcCCC
Q 039161          161 QLQNIFVMFRAMDFSSNRFHGE-ISEV-----LGNFKSLKVLNLSHNSLTGN-IPVSFENMTALESLDLSFNKLDG  229 (333)
Q Consensus       161 ~~~~~~~~L~~L~ls~n~l~~~-~~~~-----~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~  229 (333)
                      .....++.|+.|+++.+.+... .|+.     ...+++|++|++..|++... --..+..+++|++|....|.+..
T Consensus       265 ~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  265 YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            1122378899999999988732 2322     45789999999999999632 12345567888899988998874

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.21  E-value=1.1e-11  Score=79.57  Aligned_cols=60  Identities=30%  Similarity=0.461  Sum_probs=45.8

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcC
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMI   65 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l   65 (333)
                      +|++|++++|+++.+.+++|.++++|++|++++|+++...+.+|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            677788888877777777777777777777777777766667777777777777777764

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.19  E-value=3.2e-12  Score=106.35  Aligned_cols=235  Identities=20%  Similarity=0.232  Sum_probs=154.2

Q ss_pred             cccEEECcCCccccccc----hhhhCCCCccEEECCCC---cCcCCCCh-------hhcCCCCCcEEEccCCcCCCcccc
Q 039161            6 ELITLHLENNSLEGHIH----NTFANASHLRSLDLYSN---KLEGPLPR-------SLAKYIKLEVVNVENNMISDSFPC   71 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n---~l~~~~p~-------~~~~l~~L~~L~L~~n~l~~~~~~   71 (333)
                      .++.++|++|.|...-.    ..+++.++|+..+++.-   .+...+|.       ++.++++|++|+||+|.+....+.
T Consensus        31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~  110 (382)
T KOG1909|consen   31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR  110 (382)
T ss_pred             ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence            68899999999974433    44567789999999863   22234444       345678999999999998865554


Q ss_pred             c----ccCCCCCCEEEcccCcCCCCCCCC-----------CCcccCCcccEEEcCCCcccccCCc---ccccChHHhhhh
Q 039161           72 W----MGSLSELKILVLRSNQFDCPPCNS-----------NITFPFQALRIIDLSHTEFTGFLPR---RIFPSMEAMKNV  133 (333)
Q Consensus        72 ~----~~~l~~L~~L~L~~n~l~~~~~~~-----------~~~~~l~~L~~L~ls~n~l~~~~~~---~~~~~l~~L~~l  133 (333)
                      .    +..+..|++|.|.+|.+...-...           -....-+.|+++...+|++...-..   ..++..+.|+.+
T Consensus       111 ~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leev  190 (382)
T KOG1909|consen  111 GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEV  190 (382)
T ss_pred             HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceE
Confidence            4    346789999999999874221111           1124567899999999988732211   124444455555


Q ss_pred             cccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCcc----chhhhhCCCCCCEEEccCCcCCCCCcc
Q 039161          134 DEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGE----ISEVLGNFKSLKVLNLSHNSLTGNIPV  209 (333)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~  209 (333)
                      .+..|.......           .....-...++.|+.||+.+|.++..    +...++.+++|+.|++++|.+......
T Consensus       191 r~~qN~I~~eG~-----------~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~  259 (382)
T KOG1909|consen  191 RLSQNGIRPEGV-----------TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAI  259 (382)
T ss_pred             EEecccccCchh-----------HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHH
Confidence            554443221110           00111233478889999999988732    345677788899999999988755444


Q ss_pred             cc-----ccCCCCcEEeCCCCcCCCC----CCCCccccCccceeecccCcc
Q 039161          210 SF-----ENMTALESLDLSFNKLDGR----IPEQLLSVTALALLNLSYNRL  251 (333)
Q Consensus       210 ~~-----~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~l~~N~l  251 (333)
                      +|     ...++|+.|++.+|.|+..    +...+...+.|..|+|++|.+
T Consensus       260 a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  260 AFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            33     2467889999999988752    222344567888889999888

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.18  E-value=1.6e-11  Score=95.52  Aligned_cols=84  Identities=27%  Similarity=0.356  Sum_probs=20.7

Q ss_pred             CCCCccEEECCCCcCcCCCChhhc-CCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcc
Q 039161           27 NASHLRSLDLYSNKLEGPLPRSLA-KYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQAL  105 (333)
Q Consensus        27 ~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L  105 (333)
                      +...+++|+|++|.|+. +. .+. .+.+|+.|+|++|.|+.. . .+..+++|++|++++|+++...+..  ...+++|
T Consensus        17 n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~i~~~l--~~~lp~L   90 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISSISEGL--DKNLPNL   90 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHH--HHH-TT-
T ss_pred             ccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCccccch--HHhCCcC
Confidence            44456777777777763 22 243 456777777777777642 2 3556677777777777776553211  0235666


Q ss_pred             cEEEcCCCccc
Q 039161          106 RIIDLSHTEFT  116 (333)
Q Consensus       106 ~~L~ls~n~l~  116 (333)
                      +.|++++|++.
T Consensus        91 ~~L~L~~N~I~  101 (175)
T PF14580_consen   91 QELYLSNNKIS  101 (175)
T ss_dssp             -EEE-TTS---
T ss_pred             CEEECcCCcCC
Confidence            66666666665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.17  E-value=7.3e-12  Score=104.22  Aligned_cols=230  Identities=17%  Similarity=0.170  Sum_probs=143.4

Q ss_pred             hhhhCCCCccEEECCCCcCcC----CCChhhcCCCCCcEEEccCCcC---CCcccc-------cccCCCCCCEEEcccCc
Q 039161           23 NTFANASHLRSLDLYSNKLEG----PLPRSLAKYIKLEVVNVENNMI---SDSFPC-------WMGSLSELKILVLRSNQ   88 (333)
Q Consensus        23 ~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l---~~~~~~-------~~~~l~~L~~L~L~~n~   88 (333)
                      .....+..+++++|++|.+..    .+...+.+.+.|+..++++--.   ...+|.       ++..+++|+.|+||+|-
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            345568899999999999863    3444566778999999986322   123333       34567899999999998


Q ss_pred             CCCCCCCCC--CcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCce-EEeecCcchhhhhh
Q 039161           89 FDCPPCNSN--ITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESI-TVAMKGHDFQLQNI  165 (333)
Q Consensus        89 l~~~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  165 (333)
                      +....+..+  .......|++|.|.+|.+...-...+...+..+...........+....+.... .-..........+.
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~  183 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS  183 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence            753332221  224578999999999988733222222222222211111111111111111000 00011122233455


Q ss_pred             hhccceEEccCcccCc----cchhhhhCCCCCCEEEccCCcCCCC----CccccccCCCCcEEeCCCCcCCCCCCCCc--
Q 039161          166 FVMFRAMDFSSNRFHG----EISEVLGNFKSLKVLNLSHNSLTGN----IPVSFENMTALESLDLSFNKLDGRIPEQL--  235 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--  235 (333)
                      .+.|+.+.+..|.+..    .+...+..+++|+.|||++|-++..    +...+..+++|+.|++++|.+.......+  
T Consensus       184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~  263 (382)
T KOG1909|consen  184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD  263 (382)
T ss_pred             ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence            6889999999998752    2345678899999999999998743    33456677889999999999886544433  


Q ss_pred             ---cccCccceeecccCcce
Q 039161          236 ---LSVTALALLNLSYNRLW  252 (333)
Q Consensus       236 ---~~l~~L~~L~l~~N~l~  252 (333)
                         ...++|+.+.+.+|.++
T Consensus       264 al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  264 ALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             HHhccCCCCceeccCcchhH
Confidence               23678999999999986

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.12  E-value=5.6e-11  Score=76.23  Aligned_cols=61  Identities=33%  Similarity=0.450  Sum_probs=50.7

Q ss_pred             CCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcC
Q 039161           29 SHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQF   89 (333)
Q Consensus        29 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   89 (333)
                      ++|++|++++|+++...+.+|.++++|++|++++|.++...+.+|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4688888888888876667888888888888888888877777888888888888888864

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.10  E-value=2e-11  Score=99.91  Aligned_cols=130  Identities=22%  Similarity=0.217  Sum_probs=94.3

Q ss_pred             CCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEee
Q 039161           76 LSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAM  155 (333)
Q Consensus        76 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~  155 (333)
                      ...|+++||++|.++.+....   .-.|.++.|++|.|.++..      ++   |                         
T Consensus       283 Wq~LtelDLS~N~I~~iDESv---KL~Pkir~L~lS~N~i~~v------~n---L-------------------------  325 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDESV---KLAPKLRRLILSQNRIRTV------QN---L-------------------------  325 (490)
T ss_pred             Hhhhhhccccccchhhhhhhh---hhccceeEEeccccceeee------hh---h-------------------------
Confidence            456888888888877665433   3467888888888877621      11   1                         


Q ss_pred             cCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCC-CCC
Q 039161          156 KGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRI-PEQ  234 (333)
Q Consensus       156 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~  234 (333)
                              ..+++|+.||+|+|.++ .+..+-.++-+++.|.|+.|.+...  ..++++-+|..||+++|+|.... -..
T Consensus       326 --------a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~  394 (490)
T KOG1259|consen  326 --------AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNH  394 (490)
T ss_pred             --------hhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcc
Confidence                    11678888999999887 5555556777888999999888633  45667778888999999887432 235


Q ss_pred             ccccCccceeecccCccee
Q 039161          235 LLSVTALALLNLSYNRLWG  253 (333)
Q Consensus       235 ~~~l~~L~~L~l~~N~l~~  253 (333)
                      +++++.|+.+.+.+|++.+
T Consensus       395 IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  395 IGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             cccccHHHHHhhcCCCccc
Confidence            7888889999999999873

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.01  E-value=3.6e-11  Score=108.30  Aligned_cols=216  Identities=25%  Similarity=0.309  Sum_probs=116.5

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      .++.+.+..|.+.. .-..+..+.+|+.|++.+|+|.+ +...+..+++|++|++++|.|+...  .+..++.|+.|+++
T Consensus        73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLS  148 (414)
T ss_pred             hHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhheec
Confidence            34555566666653 22335566777777777777773 3333566777777777777777543  24555667777777


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI  165 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (333)
                      +|.+......    ..+++|+.+++++|.+...-+.. ...+..++.+.+.++.....                 .....
T Consensus       149 ~N~i~~~~~~----~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i-----------------~~~~~  206 (414)
T KOG0531|consen  149 GNLISDISGL----ESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI-----------------EGLDL  206 (414)
T ss_pred             cCcchhccCC----ccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc-----------------cchHH
Confidence            7777765532    33677777777777776332211 13334444444433321100                 00011


Q ss_pred             hhccceEEccCcccCccchhhhhCCC--CCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccce
Q 039161          166 FVMFRAMDFSSNRFHGEISEVLGNFK--SLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALAL  243 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  243 (333)
                      ...+..+++..|.++..-+  +..+.  +|+.+++++|.+. ..+..+..+..+..|++.+|.+...-  .+.....+..
T Consensus       207 ~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~  281 (414)
T KOG0531|consen  207 LKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSE  281 (414)
T ss_pred             HHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHH
Confidence            2233334566666552211  11222  2677777777776 33345555666777777777665321  1233344555


Q ss_pred             eecccCcce
Q 039161          244 LNLSYNRLW  252 (333)
Q Consensus       244 L~l~~N~l~  252 (333)
                      +....|.+.
T Consensus       282 ~~~~~~~~~  290 (414)
T KOG0531|consen  282 LWLNDNKLA  290 (414)
T ss_pred             hccCcchhc
Confidence            555555553

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.00  E-value=7.7e-11  Score=96.52  Aligned_cols=104  Identities=25%  Similarity=0.374  Sum_probs=66.7

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      .|+++||++|.|+ .+.++..-.+.++.|++|+|.++. +. .+..+++|+.|||++|.++ ....+-..+-++++|.|+
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence            3667777777776 444555556777777777777762 22 2666777777777777766 344555566677777777


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccc
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTG  117 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~  117 (333)
                      .|.+......    .++-+|..||+++|++..
T Consensus       361 ~N~iE~LSGL----~KLYSLvnLDl~~N~Ie~  388 (490)
T KOG1259|consen  361 QNKIETLSGL----RKLYSLVNLDLSSNQIEE  388 (490)
T ss_pred             hhhHhhhhhh----Hhhhhheeccccccchhh
Confidence            7766544311    456677777777777663

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.92  E-value=2.7e-10  Score=102.62  Aligned_cols=221  Identities=26%  Similarity=0.259  Sum_probs=154.0

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      +++.|++.+|.|..+. ..+..+++|++|++++|.|+...+  +..++.|+.|++++|.|+..  ..+..+++|+.++++
T Consensus        96 ~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~  170 (414)
T KOG0531|consen   96 SLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLS  170 (414)
T ss_pred             ceeeeeccccchhhcc-cchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhhcccCC
Confidence            7999999999998543 337789999999999999985433  66778899999999999843  356668999999999


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI  165 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (333)
                      +|++........  ..+.+++.+++.+|.+...-.   ...+..+..+.+..+...            ...+..     .
T Consensus       171 ~n~i~~ie~~~~--~~~~~l~~l~l~~n~i~~i~~---~~~~~~l~~~~l~~n~i~------------~~~~l~-----~  228 (414)
T KOG0531|consen  171 YNRIVDIENDEL--SELISLEELDLGGNSIREIEG---LDLLKKLVLLSLLDNKIS------------KLEGLN-----E  228 (414)
T ss_pred             cchhhhhhhhhh--hhccchHHHhccCCchhcccc---hHHHHHHHHhhcccccce------------eccCcc-----c
Confidence            999987775201  567899999999998874322   222233333333222100            000000     0


Q ss_pred             hh--ccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCC---CCC-CccccC
Q 039161          166 FV--MFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGR---IPE-QLLSVT  239 (333)
Q Consensus       166 ~~--~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~-~~~~l~  239 (333)
                      ..  .|+.+++++|++. ..+..+..+..+..+++..|++...  ..+.....+..+..+.|.+...   ... .....+
T Consensus       229 ~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (414)
T KOG0531|consen  229 LVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAP  305 (414)
T ss_pred             chhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccc
Confidence            12  3889999999988 4445567788999999999998843  2344556677778888877632   111 145567


Q ss_pred             ccceeecccCcceecCC
Q 039161          240 ALALLNLSYNRLWGRIP  256 (333)
Q Consensus       240 ~L~~L~l~~N~l~~~~p  256 (333)
                      .++.+.+.+|.+....+
T Consensus       306 ~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  306 TLVTLTLELNPIRKISS  322 (414)
T ss_pred             cccccccccCccccccc
Confidence            78889999998875444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=2.8e-10  Score=93.11  Aligned_cols=57  Identities=21%  Similarity=0.195  Sum_probs=28.9

Q ss_pred             hhccceEEccCc-ccCccchhhhhCCCCCCEEEccCCcCCCCCccc---cccCCCCcEEeCCC
Q 039161          166 FVMFRAMDFSSN-RFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVS---FENMTALESLDLSF  224 (333)
Q Consensus       166 ~~~L~~L~ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~Ls~  224 (333)
                      +++|.+|||++| .++.....+|-+++.|++|.++.|..  ++|+.   +...++|.+||.-+
T Consensus       312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             CCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence            566666666654 33333333445566666666665543  23332   34445555555444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.74  E-value=5.8e-09  Score=100.88  Aligned_cols=106  Identities=28%  Similarity=0.338  Sum_probs=89.8

Q ss_pred             cccEEECcCCc--cccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEE
Q 039161            6 ELITLHLENNS--LEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILV   83 (333)
Q Consensus         6 ~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   83 (333)
                      .|++|-+..|.  +.....+.|..|+.|+.|||++|.--+.+|+.++++.+|++|+|++..+. .+|..+..+.+|.+|+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN  624 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence            68899998886  66566677888999999999998776789999999999999999999998 7899999999999999


Q ss_pred             cccCcCCCCCCCCCCcccCCcccEEEcCCCc
Q 039161           84 LRSNQFDCPPCNSNITFPFQALRIIDLSHTE  114 (333)
Q Consensus        84 L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~  114 (333)
                      +..+.-....+...  ..+++|++|.+..-.
T Consensus       625 l~~~~~l~~~~~i~--~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  625 LEVTGRLESIPGIL--LELQSLRVLRLPRSA  653 (889)
T ss_pred             cccccccccccchh--hhcccccEEEeeccc
Confidence            99887655555444  668999999987654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.65  E-value=1.1e-08  Score=83.87  Aligned_cols=210  Identities=18%  Similarity=0.209  Sum_probs=115.5

Q ss_pred             CCCCccEEECCCCcCcC--CCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCc
Q 039161           27 NASHLRSLDLYSNKLEG--PLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQA  104 (333)
Q Consensus        27 ~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~  104 (333)
                      ..++++.|||.+|.|+.  .+...+.+++.|+.|+|+.|++...+...-....+|+.|.|.+..+.......+ ...+|.
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~-l~~lP~  147 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSS-LDDLPK  147 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhh-hhcchh
Confidence            35667777777777762  233345567777777777777664332211345567777776665543322222 144666


Q ss_pred             ccEEEcCCCcccccC-Ccccc-cChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCcc
Q 039161          105 LRIIDLSHTEFTGFL-PRRIF-PSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGE  182 (333)
Q Consensus       105 L~~L~ls~n~l~~~~-~~~~~-~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~  182 (333)
                      ++.|.++.|++.... .+.+. ..-+.+..++...+....+.             ........++++..+-+..|.+...
T Consensus       148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~-------------~~~~l~r~Fpnv~sv~v~e~PlK~~  214 (418)
T KOG2982|consen  148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWL-------------NKNKLSRIFPNVNSVFVCEGPLKTE  214 (418)
T ss_pred             hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHH-------------HHHhHHhhcccchheeeecCcccch
Confidence            667777766443211 11111 11123333333332211110             0112234467788888888866532


Q ss_pred             c-hhhhhCCCCCCEEEccCCcCCCCC-ccccccCCCCcEEeCCCCcCCCCCCC------CccccCccceeecccCcce
Q 039161          183 I-SEVLGNFKSLKVLNLSHNSLTGNI-PVSFENMTALESLDLSFNKLDGRIPE------QLLSVTALALLNLSYNRLW  252 (333)
Q Consensus       183 ~-~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~------~~~~l~~L~~L~l~~N~l~  252 (333)
                      - .+.+..++.+-.|+|+.|++.... -+.+.+++.|..|.+++|.+.+....      .++.+++++.|+=+  +++
T Consensus       215 s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs--kIs  290 (418)
T KOG2982|consen  215 SSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS--KIS  290 (418)
T ss_pred             hhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc--ccc
Confidence            2 233455677778889988887532 34677888899999999988754322      24566777776543  553

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.63  E-value=3.3e-09  Score=96.72  Aligned_cols=110  Identities=26%  Similarity=0.314  Sum_probs=77.5

Q ss_pred             hhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccc
Q 039161          163 QNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALA  242 (333)
Q Consensus       163 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  242 (333)
                      .+.++.++.|+|++|+++.. . .+..+++|++|||++|.+.....-.-.++ +|..|.+++|.++..  ..+.++++|+
T Consensus       183 Lqll~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~LksL~  257 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL--RGIENLKSLY  257 (1096)
T ss_pred             HHHHHHhhhhccchhhhhhh-H-HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh--hhHHhhhhhh
Confidence            34478889999999998843 3 67788999999999999984332233343 388999999988742  2467888999


Q ss_pred             eeecccCcceecCCCCCccCCccccccccccCCCCCCCC
Q 039161          243 LLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLT  281 (333)
Q Consensus       243 ~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~  281 (333)
                      .||+++|-|.+.    -++..+..+.......|.|||+-
T Consensus       258 ~LDlsyNll~~h----seL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  258 GLDLSYNLLSEH----SELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ccchhHhhhhcc----hhhhHHHHHHHHHHHhhcCCccc
Confidence            999999998732    23334444455556677777764

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.59  E-value=1.3e-09  Score=79.14  Aligned_cols=111  Identities=25%  Similarity=0.355  Sum_probs=69.2

Q ss_pred             hccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeec
Q 039161          167 VMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL  246 (333)
Q Consensus       167 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l  246 (333)
                      ..|...++++|.+....+.....++-++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++..||.
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence            44566777777777444443345557777777777777 56666777777777777777777 55665666777777777


Q ss_pred             ccCcceecCCCCCccCCccccccccccCCCCCCCCCCCC
Q 039161          247 SYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCS  285 (333)
Q Consensus       247 ~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C~  285 (333)
                      .+|.+. .+|.+....+     ..+-+.+..+||...|.
T Consensus       131 ~~na~~-eid~dl~~s~-----~~al~~lgnepl~~~~~  163 (177)
T KOG4579|consen  131 PENARA-EIDVDLFYSS-----LPALIKLGNEPLGDETK  163 (177)
T ss_pred             CCCccc-cCcHHHhccc-----cHHHHHhcCCcccccCc
Confidence            777765 5555422222     22333444456665554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.47  E-value=2.4e-07  Score=89.89  Aligned_cols=84  Identities=29%  Similarity=0.358  Sum_probs=74.8

Q ss_pred             CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161            3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL   82 (333)
Q Consensus         3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   82 (333)
                      +| .|++|||++|.=-+.+|..++++-+|++|++++..+. .+|..+.++..|.+|++..+.-...+|.....+++|++|
T Consensus       570 m~-~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L  647 (889)
T KOG4658|consen  570 LP-LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL  647 (889)
T ss_pred             Cc-ceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence            56 8999999998777799999999999999999999999 899999999999999999887655567777779999999


Q ss_pred             EcccCc
Q 039161           83 VLRSNQ   88 (333)
Q Consensus        83 ~L~~n~   88 (333)
                      .+....
T Consensus       648 ~l~~s~  653 (889)
T KOG4658|consen  648 RLPRSA  653 (889)
T ss_pred             Eeeccc
Confidence            997754

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.44  E-value=9.2e-09  Score=93.86  Aligned_cols=124  Identities=22%  Similarity=0.208  Sum_probs=88.5

Q ss_pred             ccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccc-cccCCCCCCEEEcc
Q 039161            7 LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPC-WMGSLSELKILVLR   85 (333)
Q Consensus         7 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~   85 (333)
                      |.+.+.++|.+. .+..++.-++.|+.|+|++|+++..  +.+..+++|++|||+.|.+. .+|. ....+ +|+.|.++
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr  240 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR  240 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence            556667777776 5566677788888888888888743  36788888888888888887 3443 22233 48888888


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcc
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRL  139 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~  139 (333)
                      +|.++.....    ..+.+|+.||++.|-+.+...-.....+..|+.|.+.+|.
T Consensus       241 nN~l~tL~gi----e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  241 NNALTTLRGI----ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             ccHHHhhhhH----HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            8877655422    4677888888888877766555556677777777777764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=2.4e-09  Score=87.75  Aligned_cols=179  Identities=22%  Similarity=0.238  Sum_probs=97.5

Q ss_pred             CCcEEEccCCcCCCc-ccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCC-cccccCCcccccChHHhh
Q 039161           54 KLEVVNVENNMISDS-FPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHT-EFTGFLPRRIFPSMEAMK  131 (333)
Q Consensus        54 ~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~l~~L~  131 (333)
                      .|+++||++..|+.. .-..+..+.+|+.|.+.++++........  ..-.+|+.++++.+ .++......++.+++.|.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i--AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI--AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH--hccccceeeccccccccchhHHHHHHHhhhhHh
Confidence            355666665555421 11233445556666666665554443333  34455666666553 344333333445555555


Q ss_pred             hhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcc--cC-ccchhhhhCCCCCCEEEccCCc-CCCCC
Q 039161          132 NVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNR--FH-GEISEVLGNFKSLKVLNLSHNS-LTGNI  207 (333)
Q Consensus       132 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~--l~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~  207 (333)
                      +|+++-+...             ...-.......-+.|..|++++..  +. ..+..-...+++|..|||++|. ++...
T Consensus       264 ~LNlsWc~l~-------------~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~  330 (419)
T KOG2120|consen  264 ELNLSWCFLF-------------TEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC  330 (419)
T ss_pred             hcCchHhhcc-------------chhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH
Confidence            5544322100             000111122334667777777653  11 1222334578999999999985 44333


Q ss_pred             ccccccCCCCcEEeCCCCcCCCCCCCC---ccccCccceeecccC
Q 039161          208 PVSFENMTALESLDLSFNKLDGRIPEQ---LLSVTALALLNLSYN  249 (333)
Q Consensus       208 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~l~~N  249 (333)
                      ...|.+++.|++|.++.|..  ++|..   +...++|.+||+-++
T Consensus       331 ~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  331 FQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             HHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            45567889999999999874  44554   456677888887554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.41  E-value=2.2e-08  Score=72.76  Aligned_cols=61  Identities=28%  Similarity=0.357  Sum_probs=27.6

Q ss_pred             CCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcce
Q 039161          191 KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLW  252 (333)
Q Consensus       191 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~  252 (333)
                      ..|+..+|++|.+....+..-...+.++.|+|++|.|+ .+|..+..++.|+.++++.|++.
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~  113 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN  113 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc
Confidence            34444455555554222222223334455555555554 34444555555555555555543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.40  E-value=1.8e-07  Score=76.05  Aligned_cols=111  Identities=20%  Similarity=0.244  Sum_probs=77.9

Q ss_pred             cccEEECcCCccccccchh----hhCCCCccEEECCCCc---CcCCCCh-------hhcCCCCCcEEEccCCcCCCcccc
Q 039161            6 ELITLHLENNSLEGHIHNT----FANASHLRSLDLYSNK---LEGPLPR-------SLAKYIKLEVVNVENNMISDSFPC   71 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~---l~~~~p~-------~~~~l~~L~~L~L~~n~l~~~~~~   71 (333)
                      .++.++||+|.|......+    +++-.+|+..+++.--   ....+++       ++-+|++|+.++||+|.+....|.
T Consensus        31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e  110 (388)
T COG5238          31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE  110 (388)
T ss_pred             ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence            5789999999997555444    4566788888887532   1122333       456889999999999999876665


Q ss_pred             c----ccCCCCCCEEEcccCcCCCCCCCCC-----------CcccCCcccEEEcCCCccc
Q 039161           72 W----MGSLSELKILVLRSNQFDCPPCNSN-----------ITFPFQALRIIDLSHTEFT  116 (333)
Q Consensus        72 ~----~~~l~~L~~L~L~~n~l~~~~~~~~-----------~~~~l~~L~~L~ls~n~l~  116 (333)
                      .    ++.-..|++|.+++|.+--.-...+           ....-|.|+.+....|++.
T Consensus       111 ~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle  170 (388)
T COG5238         111 ELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE  170 (388)
T ss_pred             HHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence            3    4566889999999997642221111           1134678999999999887

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=8e-08  Score=78.97  Aligned_cols=213  Identities=15%  Similarity=0.144  Sum_probs=137.3

Q ss_pred             CCCccEEECCCCcCcCCC-Chhh-cCCCCCcEEEccCCcCCCc--ccccccCCCCCCEEEcccCcCCCCCCCCCCcccCC
Q 039161           28 ASHLRSLDLYSNKLEGPL-PRSL-AKYIKLEVVNVENNMISDS--FPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQ  103 (333)
Q Consensus        28 l~~L~~L~Ls~n~l~~~~-p~~~-~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~  103 (333)
                      ...++.|.+-++.|..+- ...| ..++.++++||.+|.|++.  +...+.++|.|++|+++.|.+...+...-  .+..
T Consensus        44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~~  121 (418)
T KOG2982|consen   44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPLK  121 (418)
T ss_pred             ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--cccc
Confidence            344456666666664221 1122 3467899999999999852  34456789999999999999876554332  4677


Q ss_pred             cccEEEcCCCcccccCCcccccChHHhhhhcccCcccc-c-ccccccCceEEeecCcchhhhhhhhccceEEccCcccCc
Q 039161          104 ALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEY-M-GRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHG  181 (333)
Q Consensus       104 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~  181 (333)
                      +|+.|-+.+..+...-..+....++.++.++++.|... + -...+.+              ...+.+.+|++..|....
T Consensus       122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e--------------~~s~~v~tlh~~~c~~~~  187 (418)
T KOG2982|consen  122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIE--------------DWSTEVLTLHQLPCLEQL  187 (418)
T ss_pred             ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcccccccc--------------ccchhhhhhhcCCcHHHH
Confidence            89999999887765444555677777888877765211 0 0001111              013455666666654320


Q ss_pred             --cchhhhhCCCCCCEEEccCCcCCCCC-ccccccCCCCcEEeCCCCcCCCC-CCCCccccCccceeecccCcceecCC
Q 039161          182 --EISEVLGNFKSLKVLNLSHNSLTGNI-PVSFENMTALESLDLSFNKLDGR-IPEQLLSVTALALLNLSYNRLWGRIP  256 (333)
Q Consensus       182 --~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~p  256 (333)
                        .....-..++++..+-+..|.+...- -..+..++.+.-|+|+.|+|... .-+.+..++.|.-|.+++|++...+.
T Consensus       188 w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~  266 (418)
T KOG2982|consen  188 WLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR  266 (418)
T ss_pred             HHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence              11122234678888888888776432 23456678888999999998752 23457788889999999999875443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.28  E-value=1.8e-07  Score=76.05  Aligned_cols=233  Identities=18%  Similarity=0.108  Sum_probs=129.5

Q ss_pred             hhCCCCccEEECCCCcCcCCCCh----hhcCCCCCcEEEccCCcCC---Cccc-------ccccCCCCCCEEEcccCcCC
Q 039161           25 FANASHLRSLDLYSNKLEGPLPR----SLAKYIKLEVVNVENNMIS---DSFP-------CWMGSLSELKILVLRSNQFD   90 (333)
Q Consensus        25 ~~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~---~~~~-------~~~~~l~~L~~L~L~~n~l~   90 (333)
                      +.-+..++.++||+|-|...-..    .+.+-.+|+..++++-...   ..++       .++-.||+|+.++|+.|-+.
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            34588999999999999744333    3445578999988864322   1222       34568999999999999886


Q ss_pred             CCCCCCC--CcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEe-ecCcchhhhhhhh
Q 039161           91 CPPCNSN--ITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVA-MKGHDFQLQNIFV  167 (333)
Q Consensus        91 ~~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  167 (333)
                      ...+...  .....+.|.+|.+++|.+.......+...+..|.+.--..+...+....+....... .........+...
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~  185 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE  185 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence            5443221  124567899999999988743333332222222211111111111111110000000 0011111222235


Q ss_pred             ccceEEccCcccCccc-----hhhhhCCCCCCEEEccCCcCCCCC----ccccccCCCCcEEeCCCCcCCCCCCCCc---
Q 039161          168 MFRAMDFSSNRFHGEI-----SEVLGNFKSLKVLNLSHNSLTGNI----PVSFENMTALESLDLSFNKLDGRIPEQL---  235 (333)
Q Consensus       168 ~L~~L~ls~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---  235 (333)
                      .|+++.+..|.|.-.-     -..+..+++|+.|||++|-++-..    ..++...+.|+.|.+.+|-++......+   
T Consensus       186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~  265 (388)
T COG5238         186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR  265 (388)
T ss_pred             CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence            7788888888775221     112345678888888888876322    2233344567888888887765433221   


Q ss_pred             ---cccCccceeecccCcceecCCC
Q 039161          236 ---LSVTALALLNLSYNRLWGRIPR  257 (333)
Q Consensus       236 ---~~l~~L~~L~l~~N~l~~~~p~  257 (333)
                         ...++|..|-..+|.+.+.+-.
T Consensus       266 f~e~~~p~l~~L~~~Yne~~~~~i~  290 (388)
T COG5238         266 FNEKFVPNLMPLPGDYNERRGGIIL  290 (388)
T ss_pred             hhhhcCCCccccccchhhhcCceee
Confidence               1245677777778877653333

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.27  E-value=1.1e-06  Score=51.65  Aligned_cols=35  Identities=43%  Similarity=0.621  Sum_probs=13.2

Q ss_pred             ccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCC
Q 039161           31 LRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMIS   66 (333)
Q Consensus        31 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~   66 (333)
                      |++|++++|+|+ .+|..+.++++|+.|++++|+++
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            344444444444 22323344444444444444433

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.17  E-value=1.4e-05  Score=70.33  Aligned_cols=75  Identities=17%  Similarity=0.192  Sum_probs=46.9

Q ss_pred             hCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccC-cCCCCCCCCCCcccCCc
Q 039161           26 ANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSN-QFDCPPCNSNITFPFQA  104 (333)
Q Consensus        26 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~  104 (333)
                      ..+.+++.|++++|.++ .+|. +  ..+|++|.++++.--...|..+.  ++|+.|++++| .+...         ..+
T Consensus        49 ~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sL---------P~s  113 (426)
T PRK15386         49 EEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGL---------PES  113 (426)
T ss_pred             HHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccc---------ccc
Confidence            34678888888888777 4452 2  23688888877543335555442  57888888877 44322         235


Q ss_pred             ccEEEcCCCcc
Q 039161          105 LRIIDLSHTEF  115 (333)
Q Consensus       105 L~~L~ls~n~l  115 (333)
                      |+.|+++.+..
T Consensus       114 Le~L~L~~n~~  124 (426)
T PRK15386        114 VRSLEIKGSAT  124 (426)
T ss_pred             cceEEeCCCCC
Confidence            77777766543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.16  E-value=2.7e-06  Score=49.98  Aligned_cols=36  Identities=31%  Similarity=0.572  Sum_probs=17.5

Q ss_pred             ccceEEccCcccCccchhhhhCCCCCCEEEccCCcCC
Q 039161          168 MFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLT  204 (333)
Q Consensus       168 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  204 (333)
                      +|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3455555555555 33334555555555555555554

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.14  E-value=3.9e-06  Score=65.38  Aligned_cols=104  Identities=19%  Similarity=0.232  Sum_probs=53.8

Q ss_pred             ccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcc-cccccCCCCCCEEEcc
Q 039161            7 LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSF-PCWMGSLSELKILVLR   85 (333)
Q Consensus         7 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~   85 (333)
                      ...+||++|.+...  ..|.+++.|.+|.+.+|.|+.+-|.--..+++|..|.|.+|.|.... -.-+..+++|++|.+-
T Consensus        44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence            44556666655422  23555666666666666666554544444555666666666654211 0123445666666666


Q ss_pred             cCcCCCCCC-CCCCcccCCcccEEEcCC
Q 039161           86 SNQFDCPPC-NSNITFPFQALRIIDLSH  112 (333)
Q Consensus        86 ~n~l~~~~~-~~~~~~~l~~L~~L~ls~  112 (333)
                      +|..+...- ..+....+|+|+.||++.
T Consensus       122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             CCchhcccCceeEEEEecCcceEeehhh
Confidence            665543221 112234556666666554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.12  E-value=3.8e-06  Score=65.45  Aligned_cols=84  Identities=23%  Similarity=0.224  Sum_probs=41.6

Q ss_pred             CccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEE
Q 039161           30 HLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIID  109 (333)
Q Consensus        30 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~  109 (333)
                      +...+||++|.+. .+ ..|..++.|..|.|.+|+|+..-|..-..+++|+.|.|.+|++.....-. ....+|.|++|.
T Consensus        43 ~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~-pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD-PLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcc-hhccCCccceee
Confidence            4455566665554 12 23455555666666666665444443334455666666665554332211 113345555555


Q ss_pred             cCCCccc
Q 039161          110 LSHTEFT  116 (333)
Q Consensus       110 ls~n~l~  116 (333)
                      +-+|.++
T Consensus       120 ll~Npv~  126 (233)
T KOG1644|consen  120 LLGNPVE  126 (233)
T ss_pred             ecCCchh
Confidence            5555544

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.06  E-value=2.6e-05  Score=68.55  Aligned_cols=88  Identities=17%  Similarity=0.198  Sum_probs=59.0

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCC-cCCCcccccccCCCCCCEEEc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN-MISDSFPCWMGSLSELKILVL   84 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L   84 (333)
                      +++.|++++|.++.. |. +  -++|++|+++++.--..+|+.+.  .+|+.|++++| .+. .+|      .+|+.|++
T Consensus        53 ~l~~L~Is~c~L~sL-P~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP------~sLe~L~L  119 (426)
T PRK15386         53 ASGRLYIKDCDIESL-PV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP------ESVRSLEI  119 (426)
T ss_pred             CCCEEEeCCCCCccc-CC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc------cccceEEe
Confidence            789999999988844 52 2  24699999998543346776553  58999999998 554 344      35788888


Q ss_pred             ccCcCCCCCCCCCCcccCCcccEEEcCC
Q 039161           85 RSNQFDCPPCNSNITFPFQALRIIDLSH  112 (333)
Q Consensus        85 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~  112 (333)
                      ..+......      .-.++|+.|.+.+
T Consensus       120 ~~n~~~~L~------~LPssLk~L~I~~  141 (426)
T PRK15386        120 KGSATDSIK------NVPNGLTSLSINS  141 (426)
T ss_pred             CCCCCcccc------cCcchHhheeccc
Confidence            766544321      1124677777654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.72  E-value=0.0001  Score=54.87  Aligned_cols=60  Identities=17%  Similarity=0.230  Sum_probs=21.7

Q ss_pred             hhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161           24 TFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus        24 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      +|.++.+|+.+.+.. .+......+|..+.+|+.+.+..+ +.......|..+++++.+.+.
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence            344444555555442 233333344444444555554443 332333344444445555553

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.72  E-value=0.00014  Score=54.19  Aligned_cols=62  Identities=16%  Similarity=0.136  Sum_probs=27.9

Q ss_pred             hhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCC
Q 039161           47 RSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSH  112 (333)
Q Consensus        47 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~  112 (333)
                      .+|.++.+|+.+.+.. .+.......|..+++|+.+.+..+ +.......+  ...++++.+.+.+
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F--~~~~~l~~i~~~~   67 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAF--SNCKSLESITFPN   67 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTT--TT-TT-EEEEETS
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeee--ecccccccccccc
Confidence            3455666666666653 344444455666666666666553 444444444  4455566666643

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.65  E-value=2.5e-05  Score=74.19  Aligned_cols=117  Identities=16%  Similarity=0.233  Sum_probs=72.2

Q ss_pred             CcCcccEEECcCCccc-cccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCC-cccccccCCCCCC
Q 039161            3 FSTELITLHLENNSLE-GHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISD-SFPCWMGSLSELK   80 (333)
Q Consensus         3 l~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~   80 (333)
                      || +|+.|.+++-.+. +.....+.++++|+.||+|+.+++..  ..++++++|+.|.+.+=.+.. .--..+..+++|+
T Consensus       147 LP-sL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  147 LP-SLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR  223 (699)
T ss_pred             Cc-ccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence            45 7777777776653 23334456777888888888777633  456777777777776554442 1112456788888


Q ss_pred             EEEcccCcCCCCCC--CCC--CcccCCcccEEEcCCCcccccCCcc
Q 039161           81 ILVLRSNQFDCPPC--NSN--ITFPFQALRIIDLSHTEFTGFLPRR  122 (333)
Q Consensus        81 ~L~L~~n~l~~~~~--~~~--~~~~l~~L~~L~ls~n~l~~~~~~~  122 (333)
                      .||+|..+......  ..+  ....+|.|+.||.|++.+...+-..
T Consensus       224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~  269 (699)
T KOG3665|consen  224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE  269 (699)
T ss_pred             eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHH
Confidence            88888765543320  000  1134788888888887776544433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.60  E-value=3.2e-05  Score=73.50  Aligned_cols=108  Identities=19%  Similarity=0.313  Sum_probs=72.9

Q ss_pred             cccEEECcCCcc-ccccchhhh-CCCCccEEECCCCcCcCC-CChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161            6 ELITLHLENNSL-EGHIHNTFA-NASHLRSLDLYSNKLEGP-LPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL   82 (333)
Q Consensus         6 ~L~~L~L~~n~l-~~~~~~~~~-~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   82 (333)
                      +|+.|++++... ....+..++ -+|.|+.|.+++-.+... .-....++++|+.||+|+.+++..  ..++.+++|+.|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence            578888888653 333334443 478999999998777522 223345688899999999888743  567788888888


Q ss_pred             EcccCcCCCCCCCCCCcccCCcccEEEcCCCccc
Q 039161           83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFT  116 (333)
Q Consensus        83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~  116 (333)
                      .+.+=.+..... ......+++|+.||+|.....
T Consensus       201 ~mrnLe~e~~~~-l~~LF~L~~L~vLDIS~~~~~  233 (699)
T KOG3665|consen  201 SMRNLEFESYQD-LIDLFNLKKLRVLDISRDKNN  233 (699)
T ss_pred             hccCCCCCchhh-HHHHhcccCCCeeeccccccc
Confidence            887765543211 011256889999999886544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.39  E-value=9.7e-05  Score=60.11  Aligned_cols=93  Identities=18%  Similarity=0.194  Sum_probs=57.5

Q ss_pred             cchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCC--cCCCcccccccCCCCCCEEEcccCcCCCCCCCCCC
Q 039161           21 IHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN--MISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNI   98 (333)
Q Consensus        21 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   98 (333)
                      +......+..|+.|.+.+..++.  -..|..+++|+.|.++.|  ++.+..+.....+++|++++++.|++....... .
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-p  111 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-P  111 (260)
T ss_pred             cccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-h
Confidence            33334455667777777776662  224566778888888888  555444444555688888888888776422111 1


Q ss_pred             cccCCcccEEEcCCCccc
Q 039161           99 TFPFQALRIIDLSHTEFT  116 (333)
Q Consensus        99 ~~~l~~L~~L~ls~n~l~  116 (333)
                      ...+++|..|++.+|..+
T Consensus       112 l~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  112 LKELENLKSLDLFNCSVT  129 (260)
T ss_pred             hhhhcchhhhhcccCCcc
Confidence            244666777777777655

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.25  E-value=7.7e-05  Score=60.68  Aligned_cols=101  Identities=25%  Similarity=0.272  Sum_probs=68.4

Q ss_pred             ccEEECcCCccccccchhhhCCCCccEEECCCC--cCcCCCChhhcCCCCCcEEEccCCcCCCccccc---ccCCCCCCE
Q 039161            7 LITLHLENNSLEGHIHNTFANASHLRSLDLYSN--KLEGPLPRSLAKYIKLEVVNVENNMISDSFPCW---MGSLSELKI   81 (333)
Q Consensus         7 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~   81 (333)
                      ++.|++.+..++..  ..|..+++|++|.++.|  .+.+.++-....+++|++|+|++|+|..  ++.   ...+.+|..
T Consensus        45 le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   45 LELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKS  120 (260)
T ss_pred             hhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhh
Confidence            55566666555422  34667899999999999  6666666666778999999999999873  333   345678889


Q ss_pred             EEcccCcCCCCCCC-CCCcccCCcccEEEcC
Q 039161           82 LVLRSNQFDCPPCN-SNITFPFQALRIIDLS  111 (333)
Q Consensus        82 L~L~~n~l~~~~~~-~~~~~~l~~L~~L~ls  111 (333)
                      |++.+|..+..... ...+.-+++|.+|+-.
T Consensus       121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             hhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            99999876653211 1122345666665543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.11  E-value=1.9e-05  Score=64.67  Aligned_cols=100  Identities=18%  Similarity=0.195  Sum_probs=61.5

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcc-cccccCCCCCCEEEc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSF-PCWMGSLSELKILVL   84 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L   84 (333)
                      +++.|+..++.++++  .....|+.|+.|.||-|+|+..  ..|..|++|++|+|..|.|...- -..+.++++|+.|.|
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            456677777777654  2345677788888888777743  23677777888888777776321 123456777777777


Q ss_pred             ccCcCCCCCCCCC---CcccCCcccEEE
Q 039161           85 RSNQFDCPPCNSN---ITFPFQALRIID  109 (333)
Q Consensus        85 ~~n~l~~~~~~~~---~~~~l~~L~~L~  109 (333)
                      ..|.-.+..+...   ....+|+|+.||
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            7776554433221   123456666654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.84  E-value=1.9e-05  Score=64.71  Aligned_cols=103  Identities=20%  Similarity=0.216  Sum_probs=78.6

Q ss_pred             CCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCccc
Q 039161           27 NASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALR  106 (333)
Q Consensus        27 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~  106 (333)
                      .+.+.++|++-++.++.+  ....+++.|++|.|+-|+|+..-  .+..|++|++|+|..|.+....... ....+++|+
T Consensus        17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~-YLknlpsLr   91 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELE-YLKNLPSLR   91 (388)
T ss_pred             HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHH-HHhcCchhh
Confidence            467788999999999843  23568999999999999998544  4788999999999999987655433 336799999


Q ss_pred             EEEcCCCcccccCCcc----cccChHHhhhhc
Q 039161          107 IIDLSHTEFTGFLPRR----IFPSMEAMKNVD  134 (333)
Q Consensus       107 ~L~ls~n~l~~~~~~~----~~~~l~~L~~l~  134 (333)
                      .|.+..|.-.+..+..    ++..+++|+.|+
T Consensus        92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            9999999877665543    244555565554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.52  E-value=0.001  Score=32.48  Aligned_cols=11  Identities=45%  Similarity=0.552  Sum_probs=4.3

Q ss_pred             cEEECCCCcCc
Q 039161           32 RSLDLYSNKLE   42 (333)
Q Consensus        32 ~~L~Ls~n~l~   42 (333)
                      ++||+++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33344444333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.04  E-value=0.0036  Score=30.47  Aligned_cols=21  Identities=38%  Similarity=0.555  Sum_probs=17.1

Q ss_pred             cccEEECcCCccccccchhhhC
Q 039161            6 ELITLHLENNSLEGHIHNTFAN   27 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~   27 (333)
                      +|++|||++|+++ .+|..|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            5899999999999 66665765

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.99  E-value=0.00086  Score=61.88  Aligned_cols=109  Identities=22%  Similarity=0.154  Sum_probs=64.3

Q ss_pred             cccEEECcCCc-cccc-cchhhhCCCCccEEECCCC-cCcCCCC----hhhcCCCCCcEEEccCCc-CCCccccccc-CC
Q 039161            6 ELITLHLENNS-LEGH-IHNTFANASHLRSLDLYSN-KLEGPLP----RSLAKYIKLEVVNVENNM-ISDSFPCWMG-SL   76 (333)
Q Consensus         6 ~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~~p----~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l   76 (333)
                      .++.+.+..+. ++.. .-.....+++|++|+++++ ......+    .....+.+|+.|+++.+. +++..-..+. .+
T Consensus       189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c  268 (482)
T KOG1947|consen  189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRC  268 (482)
T ss_pred             hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhC
Confidence            66777776663 3321 2344556888888888873 2211111    233456788888888887 5544333333 37


Q ss_pred             CCCCEEEcccCc-CCCCCCCCCCcccCCcccEEEcCCCcc
Q 039161           77 SELKILVLRSNQ-FDCPPCNSNITFPFQALRIIDLSHTEF  115 (333)
Q Consensus        77 ~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~ls~n~l  115 (333)
                      ++|+.|.+.++. ++...-.. ....+++|++|+++.+..
T Consensus       269 ~~L~~L~l~~c~~lt~~gl~~-i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  269 PNLETLSLSNCSNLTDEGLVS-IAERCPSLRELDLSGCHG  307 (482)
T ss_pred             CCcceEccCCCCccchhHHHH-HHHhcCcccEEeeecCcc
Confidence            788888877665 33222111 224567788888887654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.68  E-value=0.00034  Score=60.76  Aligned_cols=86  Identities=24%  Similarity=0.218  Sum_probs=39.2

Q ss_pred             hhccceEEccCc-ccCccchhhh-hCCCCCCEEEccCCc-CCCCCcccc-ccCCCCcEEeCCCCcCCCC--CCCCccccC
Q 039161          166 FVMFRAMDFSSN-RFHGEISEVL-GNFKSLKVLNLSHNS-LTGNIPVSF-ENMTALESLDLSFNKLDGR--IPEQLLSVT  239 (333)
Q Consensus       166 ~~~L~~L~ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~  239 (333)
                      +..|+.|+.+++ .+++..-.++ .+.++|+.+.++.++ ++..--..+ .+.+.|+.+++..+.....  +...-.+++
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence            555666666654 3333332333 245666677666664 221111111 2345556666555533211  111223445


Q ss_pred             ccceeecccCcc
Q 039161          240 ALALLNLSYNRL  251 (333)
Q Consensus       240 ~L~~L~l~~N~l  251 (333)
                      .|+.+.++++.+
T Consensus       373 ~lr~lslshce~  384 (483)
T KOG4341|consen  373 RLRVLSLSHCEL  384 (483)
T ss_pred             hhccCChhhhhh
Confidence            555555555543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.67  E-value=7.4e-05  Score=68.00  Aligned_cols=110  Identities=22%  Similarity=0.205  Sum_probs=63.0

Q ss_pred             ccEEECcCCccccccc----hhhhCCCCccEEECCCCcCcCCCChh----hcCC-CCCcEEEccCCcCCCc----ccccc
Q 039161            7 LITLHLENNSLEGHIH----NTFANASHLRSLDLYSNKLEGPLPRS----LAKY-IKLEVVNVENNMISDS----FPCWM   73 (333)
Q Consensus         7 L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~p~~----~~~l-~~L~~L~L~~n~l~~~----~~~~~   73 (333)
                      +..+.|.+|.+.....    ..+...+.|..|++++|.+...--..    +... ..++.|++..|.++..    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            5667777777764333    34556778888888888876322211    2222 4566677777777643    23344


Q ss_pred             cCCCCCCEEEcccCcCCCCC----CCCCC--cccCCcccEEEcCCCccc
Q 039161           74 GSLSELKILVLRSNQFDCPP----CNSNI--TFPFQALRIIDLSHTEFT  116 (333)
Q Consensus        74 ~~l~~L~~L~L~~n~l~~~~----~~~~~--~~~l~~L~~L~ls~n~l~  116 (333)
                      .....++.++++.|.+....    +....  .....++++|++++|.++
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t  217 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT  217 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence            55677777777777764111    01110  023456667777776665

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.62  E-value=0.0001  Score=67.14  Aligned_cols=86  Identities=29%  Similarity=0.297  Sum_probs=42.7

Q ss_pred             hccceEEccCcccCcc----chhhhhCCCC-CCEEEccCCcCCCCC----ccccccC-CCCcEEeCCCCcCCCCCC----
Q 039161          167 VMFRAMDFSSNRFHGE----ISEVLGNFKS-LKVLNLSHNSLTGNI----PVSFENM-TALESLDLSFNKLDGRIP----  232 (333)
Q Consensus       167 ~~L~~L~ls~n~l~~~----~~~~~~~l~~-L~~L~Ls~n~l~~~~----~~~~~~l-~~L~~L~Ls~n~l~~~~~----  232 (333)
                      ..+++|+++++.++..    +...+...+. +..+++..|.+.+..    ...+..+ ..+++++++.|.|+....    
T Consensus       204 ~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~  283 (478)
T KOG4308|consen  204 SSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA  283 (478)
T ss_pred             ccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH
Confidence            4455566666655421    1122333444 555666666665331    1222333 455666666666655322    


Q ss_pred             CCccccCccceeecccCcce
Q 039161          233 EQLLSVTALALLNLSYNRLW  252 (333)
Q Consensus       233 ~~~~~l~~L~~L~l~~N~l~  252 (333)
                      ..+..++.++.+.+++|.+.
T Consensus       284 ~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  284 EVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHhhhHHHHHhhcccCccc
Confidence            23344455666666666663

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=94.61  E-value=0.00066  Score=59.01  Aligned_cols=83  Identities=19%  Similarity=0.136  Sum_probs=46.7

Q ss_pred             CcCcccEEECcCCc-cccccchhh-hCCCCccEEECCCC-cCcCCCCh-hhcCCCCCcEEEccCCc-CCCcc-cccccCC
Q 039161            3 FSTELITLHLENNS-LEGHIHNTF-ANASHLRSLDLYSN-KLEGPLPR-SLAKYIKLEVVNVENNM-ISDSF-PCWMGSL   76 (333)
Q Consensus         3 l~~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~p~-~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l   76 (333)
                      +| +++.|.+.++. +++..-..+ ..++.|++|++..| .+|...-. -...+++|++++++++. +++.. ...+.++
T Consensus       163 Cp-nIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~  241 (483)
T KOG4341|consen  163 CP-NIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC  241 (483)
T ss_pred             CC-chhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence            45 77778777764 333322333 35778888888884 44433323 22467888888888875 33311 1123344


Q ss_pred             CCCCEEEccc
Q 039161           77 SELKILVLRS   86 (333)
Q Consensus        77 ~~L~~L~L~~   86 (333)
                      ..++.+.+.+
T Consensus       242 ~~l~~~~~kG  251 (483)
T KOG4341|consen  242 KELEKLSLKG  251 (483)
T ss_pred             hhhhhhhhcc
Confidence            4555555444

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.52  E-value=0.022  Score=25.66  Aligned_cols=10  Identities=60%  Similarity=0.946  Sum_probs=3.0

Q ss_pred             ccEEECCCCc
Q 039161           31 LRSLDLYSNK   40 (333)
Q Consensus        31 L~~L~Ls~n~   40 (333)
                      |+.|++++|+
T Consensus         3 L~~L~l~~n~   12 (17)
T PF13504_consen    3 LRTLDLSNNR   12 (17)
T ss_dssp             -SEEEETSS-
T ss_pred             cCEEECCCCC
Confidence            3333333333

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.53  E-value=0.074  Score=26.87  Aligned_cols=13  Identities=54%  Similarity=0.802  Sum_probs=6.3

Q ss_pred             CccEEECCCCcCc
Q 039161           30 HLRSLDLYSNKLE   42 (333)
Q Consensus        30 ~L~~L~Ls~n~l~   42 (333)
                      +|++|+|++|+++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4444444444444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.53  E-value=0.074  Score=26.87  Aligned_cols=13  Identities=54%  Similarity=0.802  Sum_probs=6.3

Q ss_pred             CccEEECCCCcCc
Q 039161           30 HLRSLDLYSNKLE   42 (333)
Q Consensus        30 ~L~~L~Ls~n~l~   42 (333)
                      +|++|+|++|+++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4444444444444

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.48  E-value=0.0017  Score=52.25  Aligned_cols=84  Identities=17%  Similarity=0.190  Sum_probs=66.0

Q ss_pred             hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161          166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN  245 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  245 (333)
                      ....+.||++.|++- .+-.-|+.++.++.|+++.|++. ..|..++....++++++..|..+ ..|..+...++++.++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            456677888888776 44455677778888888888888 67888888888888888888877 7788888888888888


Q ss_pred             cccCcce
Q 039161          246 LSYNRLW  252 (333)
Q Consensus       246 l~~N~l~  252 (333)
                      +..|.+.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            8888764

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.71  E-value=0.1  Score=26.29  Aligned_cols=13  Identities=46%  Similarity=0.738  Sum_probs=5.6

Q ss_pred             CCCEEEccCCcCC
Q 039161          192 SLKVLNLSHNSLT  204 (333)
Q Consensus       192 ~L~~L~Ls~n~l~  204 (333)
                      +|+.|+|++|+++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.71  E-value=0.1  Score=26.29  Aligned_cols=13  Identities=46%  Similarity=0.738  Sum_probs=5.6

Q ss_pred             CCCEEEccCCcCC
Q 039161          192 SLKVLNLSHNSLT  204 (333)
Q Consensus       192 ~L~~L~Ls~n~l~  204 (333)
                      +|+.|+|++|+++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.37  E-value=0.017  Score=45.57  Aligned_cols=83  Identities=25%  Similarity=0.200  Sum_probs=57.6

Q ss_pred             hccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCC-Cccccc-cCCCCcEEeCCCC-cCCCCCCCCccccCccce
Q 039161          167 VMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGN-IPVSFE-NMTALESLDLSFN-KLDGRIPEQLLSVTALAL  243 (333)
Q Consensus       167 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~-~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~  243 (333)
                      ..++.+|-++..+..+--+-+..++.++.|.+.++.--+. --+-++ ..++|+.|++++| +|++..-..+..+++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            3567888888888777677788888888888887753211 111111 3478999999977 777665566677788887


Q ss_pred             eecccC
Q 039161          244 LNLSYN  249 (333)
Q Consensus       244 L~l~~N  249 (333)
                      |.+.+=
T Consensus       181 L~l~~l  186 (221)
T KOG3864|consen  181 LHLYDL  186 (221)
T ss_pred             HHhcCc
Confidence            766653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.73  E-value=0.0046  Score=49.82  Aligned_cols=95  Identities=20%  Similarity=0.151  Sum_probs=69.2

Q ss_pred             cccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCC
Q 039161           17 LEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNS   96 (333)
Q Consensus        17 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   96 (333)
                      +..+....+......+.||++.|++. .....|+-++.+..|+++.|.+. ..|..+..+..+..+++.+|..+..+.. 
T Consensus        30 ~s~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s-  106 (326)
T KOG0473|consen   30 LSEIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKS-  106 (326)
T ss_pred             hcccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCcc-
Confidence            34344455666778888888888876 44556777788888888888886 5677777777888888888877655433 


Q ss_pred             CCcccCCcccEEEcCCCccc
Q 039161           97 NITFPFQALRIIDLSHTEFT  116 (333)
Q Consensus        97 ~~~~~l~~L~~L~ls~n~l~  116 (333)
                      +  ...+.++++++-.|.++
T Consensus       107 ~--~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  107 Q--KKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             c--cccCCcchhhhccCcch
Confidence            3  67788888888887754

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.77  E-value=0.013  Score=46.13  Aligned_cols=83  Identities=17%  Similarity=0.139  Sum_probs=53.7

Q ss_pred             CCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCC-cccccCCcccccChHHh
Q 039161           52 YIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHT-EFTGFLPRRIFPSMEAM  130 (333)
Q Consensus        52 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~l~~L  130 (333)
                      -..++.+|-++..|..+.-..+..+++++.|.+.++.--+...-.......++|+.|++++| +||.. .-.....+++|
T Consensus       100 ~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknL  178 (221)
T KOG3864|consen  100 NVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-GLACLLKLKNL  178 (221)
T ss_pred             cceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-HHHHHHHhhhh
Confidence            34678888888888877777788888888888888764333222222245789999999987 46522 22224444555


Q ss_pred             hhhcc
Q 039161          131 KNVDE  135 (333)
Q Consensus       131 ~~l~~  135 (333)
                      +.+.+
T Consensus       179 r~L~l  183 (221)
T KOG3864|consen  179 RRLHL  183 (221)
T ss_pred             HHHHh
Confidence            55544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=90.22  E-value=0.094  Score=25.90  Aligned_cols=15  Identities=40%  Similarity=0.541  Sum_probs=6.7

Q ss_pred             cccEEECcCCccccc
Q 039161            6 ELITLHLENNSLEGH   20 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~   20 (333)
                      +|++|+|++|.|++.
T Consensus         3 ~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    3 NLETLDLSNNQITDE   17 (24)
T ss_dssp             T-SEEE-TSSBEHHH
T ss_pred             CCCEEEccCCcCCHH
Confidence            455555555555443

...

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=84.40  E-value=0.95  Score=22.91  Aligned_cols=14  Identities=43%  Similarity=0.698  Sum_probs=7.0

Q ss_pred             CCccEEECCCCcCc
Q 039161           29 SHLRSLDLYSNKLE   42 (333)
Q Consensus        29 ~~L~~L~Ls~n~l~   42 (333)
                      .+|+.|++++|+|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            34555555555554

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=83.63  E-value=0.77  Score=23.19  Aligned_cols=13  Identities=38%  Similarity=0.537  Sum_probs=7.0

Q ss_pred             cccEEECcCCccc
Q 039161            6 ELITLHLENNSLE   18 (333)
Q Consensus         6 ~L~~L~L~~n~l~   18 (333)
                      +|+.|+.++|+++
T Consensus         3 ~L~~L~vs~N~Lt   15 (26)
T smart00364        3 SLKELNVSNNQLT   15 (26)
T ss_pred             ccceeecCCCccc
Confidence            4555555555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=82.47  E-value=0.92  Score=41.78  Aligned_cols=85  Identities=21%  Similarity=0.103  Sum_probs=57.3

Q ss_pred             cccEEECcCC-cccccc----chhhhCCCCccEEECCCCc-CcCCCChhhc-CCCCCcEEEccCCc-CCCcccc-cccCC
Q 039161            6 ELITLHLENN-SLEGHI----HNTFANASHLRSLDLYSNK-LEGPLPRSLA-KYIKLEVVNVENNM-ISDSFPC-WMGSL   76 (333)
Q Consensus         6 ~L~~L~L~~n-~l~~~~----~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~-~l~~L~~L~L~~n~-l~~~~~~-~~~~l   76 (333)
                      +|+.|+++++ ......    ......+++|+.|+++++. ++...-..+. .+++|+.|.+..+. +++..-. ....+
T Consensus       215 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~  294 (482)
T KOG1947|consen  215 NLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERC  294 (482)
T ss_pred             hhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhc
Confidence            8999999873 221111    1234567899999999998 6644333443 38899999988777 5543322 33467


Q ss_pred             CCCCEEEcccCcCC
Q 039161           77 SELKILVLRSNQFD   90 (333)
Q Consensus        77 ~~L~~L~L~~n~l~   90 (333)
                      ++|++|+++.+...
T Consensus       295 ~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  295 PSLRELDLSGCHGL  308 (482)
T ss_pred             CcccEEeeecCccc
Confidence            88999999987543

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=80.04  E-value=1.6  Score=22.38  Aligned_cols=15  Identities=53%  Similarity=0.640  Sum_probs=9.8

Q ss_pred             CCCcEEeCCCCcCCC
Q 039161          215 TALESLDLSFNKLDG  229 (333)
Q Consensus       215 ~~L~~L~Ls~n~l~~  229 (333)
                      ++|++|||++|.+..
T Consensus         2 ~~L~~LdL~~N~i~~   16 (28)
T smart00368        2 PSLRELDLSNNKLGD   16 (28)
T ss_pred             CccCEEECCCCCCCH
Confidence            456777777777653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	333
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-25
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-25
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		7e-11
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		3e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  111 bits (277), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 143/339 (42%), Gaps = 67/339 (19%)
Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEV------- 57
           +EL++LHL  N L G I ++  + S LR L L+ N LEG +P+ L     LE        
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477
Query: 58  -----------------VNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITF 100
                            +++ NN ++   P W+G L  L IL L +N F     + NI  
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF-----SGNIPA 532
Query: 101 PF---QALRIIDLSHTEFTGFLP------------------RRIFPSMEAMKN------- 132
                ++L  +DL+   F G +P                  R ++   + MK        
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592
Query: 133 -VDEQG-RLEYMGRAFCDESITVAMKGHDFQLQNIF-----VMFRAMDFSSNRFHGEISE 185
            ++ QG R E + R        +  + +       F     +MF  +D S N   G I +
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF--LDMSYNMLSGYIPK 650
Query: 186 VLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQXXXXXXXXXXX 245
            +G+   L +LNL HN ++G+IP    ++  L  LDLS NKLDGRIP+            
Sbjct: 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710
Query: 246 XXYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRC 284
              N L G IP   QF TF    ++ N  LCG PL  RC
Sbjct: 711 LSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RC 748

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  111 bits (277), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 143/339 (42%), Gaps = 67/339 (19%)
Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEV------- 57
           +EL++LHL  N L G I ++  + S LR L L+ N LEG +P+ L     LE        
Sbjct: 415 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 474
Query: 58  -----------------VNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITF 100
                            +++ NN ++   P W+G L  L IL L +N F     + NI  
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF-----SGNIPA 529
Query: 101 PF---QALRIIDLSHTEFTGFLP------------------RRIFPSMEAMKN------- 132
                ++L  +DL+   F G +P                  R ++   + MK        
Sbjct: 530 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 589
Query: 133 -VDEQG-RLEYMGRAFCDESITVAMKGHDFQLQNIF-----VMFRAMDFSSNRFHGEISE 185
            ++ QG R E + R        +  + +       F     +MF  +D S N   G I +
Sbjct: 590 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF--LDMSYNMLSGYIPK 647
Query: 186 VLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQXXXXXXXXXXX 245
            +G+   L +LNL HN ++G+IP    ++  L  LDLS NKLDGRIP+            
Sbjct: 648 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 707
Query: 246 XXYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRC 284
              N L G IP   QF TF    ++ N  LCG PL  RC
Sbjct: 708 LSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RC 745

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 112/284 (39%), Gaps = 66/284 (23%)
Query: 21  IHNTFANASHLRSLDLYS-NKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSEL 79
           I ++ AN  +L  L +   N L GP+P ++AK  +L  + + +  +S + P +   LS++
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF---LSQI 124
Query: 80  KILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRL 139
           K LV                        +D S+   +G LP    PS+ ++ N+      
Sbjct: 125 KTLV-----------------------TLDFSYNALSGTLP----PSISSLPNL------ 151
Query: 140 EYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLS 199
             +G  F    I+ A+         +F    +M  S NR  G+I     N  +L  ++LS
Sbjct: 152 --VGITFDGNRISGAIPDSYGSFSKLFT---SMTISRNRLTGKIPPTFANL-NLAFVDLS 205
Query: 200 HNSLTGNIPVSF------------ENMTA-----------LESLDLSFNKLDGRIPEQXX 236
            N L G+  V F            +N  A           L  LDL  N++ G +P+   
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Query: 237 XXXXXXXXXXXYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPL 280
                      +N L G IP+G     F   +Y  N  LCG PL
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 43/85 (50%)
Query: 7   LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMIS 66
           L+ L L+ N L G   N F  ASH++ L L  NK++    +      +L+ +N+ +N IS
Sbjct: 56  LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115
Query: 67  DSFPCWMGSLSELKILVLRSNQFDC 91
              P     L+ L  L L SN F+C
Sbjct: 116 CVMPGSFEHLNSLTSLNLASNPFNC 140

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	333
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-70
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-43
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-42
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-41
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-39
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-39
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-37
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-37
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-37
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-35
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-42
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-34
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-27
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-25
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  230 bits (590), Expect = 6e-70
 Identities = 81/322 (25%), Positives = 130/322 (40%), Gaps = 36/322 (11%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
           ++L  L L  N LEG I         L +L L  N L G +P  L+    L  +++ NN 
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501

Query: 65  ISDSFPCWMGSLSELKILVLRSNQF--DCPPCNSNITFPFQALRIIDLSHTEFTGFLPRR 122
           ++   P W+G L  L IL L +N F  + P    +     ++L  +DL+   F G +P  
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD----CRSLIWLDLNTNLFNGTIPAA 557

Query: 123 IFPSMEAMKNVDEQGRL------EYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSS 176
           +F     +      G+       + M +        +  +G   +  N        + +S
Sbjct: 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617

Query: 177 NRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLL 236
             + G  S    N  S+  L++S+N L+G IP    +M  L  L+L  N + G IP+++ 
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677

Query: 237 SVTALALLNLSYNRL------------------------WGRIPRGNQFNTFQNDSYIGN 272
            +  L +L+LS N+L                         G IP   QF TF    ++ N
Sbjct: 678 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNN 737

Query: 273 IRLCGEPLTVRCSNDGLPKAPR 294
             LCG PL     ++    A  
Sbjct: 738 PGLCGYPLPRCDPSNADGYAHH 759

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  157 bits (399), Expect = 4e-43
 Identities = 74/254 (29%), Positives = 99/254 (38%), Gaps = 42/254 (16%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPR-SLAKYIKLEVVNVENN 63
             L  L L  N   G +   F + S L SL L SN   G LP  +L K   L+V+++  N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353

Query: 64  MISDSFPCWMGSLS-ELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRR 122
             S   P  + +LS  L  L L SN F  P   +    P   L+ + L +  FTG +P  
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413

Query: 123 IFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGE 182
           +                                         +     ++  S N   G 
Sbjct: 414 LS------------------------------------NCSEL----VSLHLSFNYLSGT 433

Query: 183 ISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALA 242
           I   LG+   L+ L L  N L G IP     +  LE+L L FN L G IP  L + T L 
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493

Query: 243 LLNLSYNRLWGRIP 256
            ++LS NRL G IP
Sbjct: 494 WISLSNNRLTGEIP 507

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  156 bits (396), Expect = 1e-42
 Identities = 66/257 (25%), Positives = 99/257 (38%), Gaps = 45/257 (17%)

Query: 5   TELITLHLENNSLEGHIHNTFA-NASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
             L  L L  N   G I +  +     L  LDL  N   G +P        LE + + +N
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328

Query: 64  MISDSFPC-WMGSLSELKILVLRSNQFD--CPPCNSNITFPFQALRIIDLSHTEFTGFLP 120
             S   P   +  +  LK+L L  N+F    P   +N++    +L  +DLS   F+G + 
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS---ASLLTLDLSSNNFSGPIL 385

Query: 121 RRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFH 180
             +  +                                      +  +       +N F 
Sbjct: 386 PNLCQN----------------------------------PKNTLQEL----YLQNNGFT 407

Query: 181 GEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA 240
           G+I   L N   L  L+LS N L+G IP S  +++ L  L L  N L+G IP++L+ V  
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467

Query: 241 LALLNLSYNRLWGRIPR 257
           L  L L +N L G IP 
Sbjct: 468 LETLILDFNDLTGEIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  150 bits (382), Expect = 8e-41
 Identities = 67/276 (24%), Positives = 100/276 (36%), Gaps = 51/276 (18%)

Query: 5   TELITLHLENNSLEGHIHNTFANAS-HLRSLDLYSNKLEGPLPRSLAKYIK--LEVVNVE 61
             L  L L  N   G +  +  N S  L +LDL SN   GP+  +L +  K  L+ + ++
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402

Query: 62  NNMISDSFPCWMGSLSELKILVLRSNQF--DCPPCNSNITFPFQALRIIDLSHTEFTGFL 119
           NN  +   P  + + SEL  L L  N      P    +++     LR + L      G +
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK----LRDLKLWLNMLEGEI 458

Query: 120 PRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRF 179
           P+ +                                  +   L+ +           N  
Sbjct: 459 PQEL---------------------------------MYVKTLETL-------ILDFNDL 478

Query: 180 HGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT 239
            GEI   L N  +L  ++LS+N LTG IP     +  L  L LS N   G IP +L    
Sbjct: 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538

Query: 240 ALALLNLSYNRLWGRIPR--GNQFNTFQNDSYIGNI 273
           +L  L+L+ N   G IP     Q      +   G  
Sbjct: 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  145 bits (369), Expect = 4e-39
 Identities = 76/256 (29%), Positives = 105/256 (41%), Gaps = 47/256 (18%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYI-KLEVVNVENN 63
           TEL  L++ +N   G I         L+ L L  NK  G +P  L+     L  +++  N
Sbjct: 247 TELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304

Query: 64  MISDSFPCWMGSLSELKILVLRSNQFDCP-PCNSNITFPFQALRIIDLSHTEFTGFLPRR 122
               + P + GS S L+ L L SN F    P ++      + L+++DLS  EF+G LP  
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL--LKMRGLKVLDLSFNEFSGELPES 362

Query: 123 IFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGE 182
           +                                        N+      +D SSN F G 
Sbjct: 363 LT---------------------------------------NLSASLLTLDLSSNNFSGP 383

Query: 183 ISEVLGNF--KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA 240
           I   L      +L+ L L +N  TG IP +  N + L SL LSFN L G IP  L S++ 
Sbjct: 384 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443

Query: 241 LALLNLSYNRLWGRIP 256
           L  L L  N L G IP
Sbjct: 444 LRDLKLWLNMLEGEIP 459

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  145 bits (368), Expect = 5e-39
 Identities = 68/264 (25%), Positives = 109/264 (41%), Gaps = 40/264 (15%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
            EL  L +  N + G +    +   +L  LD+ SN     +P  L     L+ +++  N 
Sbjct: 178 GELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNK 234

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNI-TFPFQALRIIDLSHTEFTGFLPRRI 123
           +S  F   + + +ELK+L + SNQF        I   P ++L+ + L+  +FTG +P  +
Sbjct: 235 LSGDFSRAISTCTELKLLNISSNQF-----VGPIPPLPLKSLQYLSLAENKFTGEIPDFL 289

Query: 124 FPSMEAMKNVDEQGRLEYMGRAFCD------ESITVAMKGHDFQLQNIFVMFRAMDFSSN 177
             +            L  +  +                         +     ++  SSN
Sbjct: 290 SGAC---------DTLTGLDLSGNHFYGAVPPFF--------GSCSLL----ESLALSSN 328

Query: 178 RFHGEI-SEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTA-LESLDLSFNKLDGRIPEQL 235
            F GE+  + L   + LKVL+LS N  +G +P S  N++A L +LDLS N   G I   L
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388

Query: 236 --LSVTALALLNLSYNRLWGRIPR 257
                  L  L L  N   G+IP 
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPP 412

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  141 bits (359), Expect = 1e-37
 Identities = 69/259 (26%), Positives = 103/259 (39%), Gaps = 50/259 (19%)

Query: 5   TELITLHLENNSLEGHI-HNTFANASHLRSLDLYSNKLEGPLPRSLAK-YIKLEVVNVEN 62
           + L +L L +N+  G +  +T      L+ LDL  N+  G LP SL      L  +++ +
Sbjct: 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377

Query: 63  NMISDSFPCWMG--SLSELKILVLRSNQF--DCPPCNSNITFPFQALRIIDLSHTEFTGF 118
           N  S      +     + L+ L L++N F    PP  SN +     L  + LS    +G 
Sbjct: 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS----ELVSLHLSFNYLSGT 433

Query: 119 LPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNR 178
           +P     S+ ++        L  +                                  N 
Sbjct: 434 IP----SSLGSLSK------LRDL------------------------------KLWLNM 453

Query: 179 FHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSV 238
             GEI + L   K+L+ L L  N LTG IP    N T L  + LS N+L G IP+ +  +
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513

Query: 239 TALALLNLSYNRLWGRIPR 257
             LA+L LS N   G IP 
Sbjct: 514 ENLAILKLSNNSFSGNIPA 532

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  141 bits (357), Expect = 2e-37
 Identities = 61/259 (23%), Positives = 95/259 (36%), Gaps = 52/259 (20%)

Query: 2   SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVE 61
           +    L  L+L+NN   G I  T +N S L SL L  N L G +P SL    KL  + + 
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450

Query: 62  NNMISDSFPCWMGSLSELKILVLRSNQF--DCPPCNSNITFPFQALRIIDLSHTEFTGFL 119
            NM+    P  +  +  L+ L+L  N    + P   SN T     L  I LS+   TG +
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT----NLNWISLSNNRLTGEI 506

Query: 120 PRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRF 179
           P      +  ++N+                                      +  S+N F
Sbjct: 507 P----KWIGRLENL------------------------------------AILKLSNNSF 526

Query: 180 HGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT 239
            G I   LG+ +SL  L+L+ N   G IP +        S  ++ N + G+    + +  
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKRYVYIKNDG 582

Query: 240 ALALLNLSYN--RLWGRIP 256
                + + N     G   
Sbjct: 583 MKKECHGAGNLLEFQGIRS 601

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  139 bits (353), Expect = 5e-37
 Identities = 62/259 (23%), Positives = 104/259 (40%), Gaps = 56/259 (21%)

Query: 5   TELITLHLENNSLEGHIHNTFA---NASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVE 61
             L  L L  NS+ G     +        L+ L +  NK+ G +   +++ + LE ++V 
Sbjct: 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVS 208

Query: 62  NNMISDSFPCWMGSLSELKILVLRSNQF--DCPPCNSNITFPFQALRIIDLSHTEFTGFL 119
           +N  S   P ++G  S L+ L +  N+   D     S  T     L+++++S  +F G +
Sbjct: 209 SNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCT----ELKLLNISSNQFVGPI 263

Query: 120 PRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRF 179
           P     S++ +                                            + N+F
Sbjct: 264 PPLPLKSLQYL------------------------------------------SLAENKF 281

Query: 180 HGEI-SEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS- 237
            GEI   + G   +L  L+LS N   G +P  F + + LESL LS N   G +P   L  
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341

Query: 238 VTALALLNLSYNRLWGRIP 256
           +  L +L+LS+N   G +P
Sbjct: 342 MRGLKVLDLSFNEFSGELP 360

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  137 bits (348), Expect = 2e-36
 Identities = 60/258 (23%), Positives = 109/258 (42%), Gaps = 25/258 (9%)

Query: 4   STELITLHLENNSLE---GHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNV 60
             ++ ++ L +  L      + ++  + + L SL L ++ + G +         L  +++
Sbjct: 49  DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDL 107

Query: 61  ENNMISDSFP--CWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGF 118
             N +S        +GS S LK L + SN  D P    +      +L ++DLS    +G 
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG-KVSGGLKLNSLEVLDLSANSISGA 166

Query: 119 LPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNR 178
                             G L+++  +    S  V +     +  N+      +D SSN 
Sbjct: 167 NV----VGWVLSDGC---GELKHLAISGNKISGDVDV----SRCVNL----EFLDVSSNN 211

Query: 179 FHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSV 238
           F   I   LG+  +L+ L++S N L+G+   +    T L+ L++S N+  G IP   L  
Sbjct: 212 FSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK- 269

Query: 239 TALALLNLSYNRLWGRIP 256
            +L  L+L+ N+  G IP
Sbjct: 270 -SLQYLSLAENKFTGEIP 286

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  136 bits (346), Expect = 5e-36
 Identities = 61/276 (22%), Positives = 111/276 (40%), Gaps = 52/276 (18%)

Query: 1   GSFSTELITLHLENNSLEGHIHNTFAN--ASHLRSLDLYSNKLEGPLPRSLAKYIKLEVV 58
            + S  L+TL L +N+  G I         + L+ L L +N   G +P +L+   +L  +
Sbjct: 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423

Query: 59  NVENNMISDSFPCWMGSLSELKILVLRSNQF--DCPPCNSNITFPFQALRIIDLSHTEFT 116
           ++  N +S + P  +GSLS+L+ L L  N    + P     +      L  + L   + T
Sbjct: 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK----TLETLILDFNDLT 479

Query: 117 GFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSS 176
           G +P  +                                        N+      +  S+
Sbjct: 480 GEIPSGL------------------------------------SNCTNLNW----ISLSN 499

Query: 177 NRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLL 236
           NR  GEI + +G  ++L +L LS+NS +GNIP    +  +L  LDL+ N  +G IP  + 
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559

Query: 237 SVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGN 272
             +      ++ N + G+     + +  + + +   
Sbjct: 560 KQS----GKIAANFIAGKRYVYIKNDGMKKECHGAG 591

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  133 bits (337), Expect = 9e-35
 Identities = 63/263 (23%), Positives = 102/263 (38%), Gaps = 56/263 (21%)

Query: 2   SFSTELITLHLENNSLEGHI--HNTFANASHLRSLDLYSNKLEGPLPRS-LAKYIKLEVV 58
             S  L +L L  NSL G +    +  + S L+ L++ SN L+ P   S   K   LEV+
Sbjct: 97  KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156

Query: 59  NVENNMISDSFP---CWMGSLSELKILVLRSNQFDCPPCNSNITFP-FQALRIIDLSHTE 114
           ++  N IS +            ELK L +  N+      + ++       L  +D+S   
Sbjct: 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKI-----SGDVDVSRCVNLEFLDVSSNN 211

Query: 115 FTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDF 174
           F+  +P                              +             +    + +D 
Sbjct: 212 FSTGIP-----------------------------FL--------GDCSAL----QHLDI 230

Query: 175 SSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQ 234
           S N+  G+ S  +     LK+LN+S N   G IP     + +L+ L L+ NK  G IP+ 
Sbjct: 231 SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDF 288

Query: 235 LL-SVTALALLNLSYNRLWGRIP 256
           L  +   L  L+LS N  +G +P
Sbjct: 289 LSGACDTLTGLDLSGNHFYGAVP 311

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 85.7 bits (213), Expect = 1e-18
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 170 RAMDFSSNRFHGEISEV--LGNFKSLKVLNLSHNSLTGNIPVS-FENMTALESLDLSFNK 226
            ++D S N   G ++ +  LG+   LK LN+S N+L     VS    + +LE LDLS N 
Sbjct: 103 TSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162

Query: 227 LDGRIPEQLL---SVTALALLNLSYNRLWGRIPRGN 259
           + G      +       L  L +S N++ G +    
Sbjct: 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSR 198

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.3 bits (186), Expect = 4e-15
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)

Query: 177 NRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE--Q 234
           N     +S  L +   L+ L LS++ + G++   F+   +L SLDLS N L G +     
Sbjct: 63  NVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTS 121

Query: 235 LLSVTALALLNLSYNRLWGRIPRGNQFN 262
           L S + L  LN+S N L           
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLK 149

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 4/78 (5%)

Query: 192 SLKVLNLSHNSLT---GNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSY 248
            +  ++LS   L      +  S  ++T LESL LS + ++G +        +L  L+LS 
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSR 109

Query: 249 NRLWGRIPRGNQFNTFQN 266
           N L G +       +   
Sbjct: 110 NSLSGPVTTLTSLGSCSG 127

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  184 bits (470), Expect = 2e-56
 Identities = 64/284 (22%), Positives = 107/284 (37%), Gaps = 49/284 (17%)

Query: 5   TELITLHLEN-NSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
             L  L++   N+L G I    A  + L  L +    + G +P  L++   L  ++   N
Sbjct: 76  PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN 135

Query: 64  MISDSFPCWMGSLSELKILVLRSNQFD--CPPCNSNITFPFQALRIIDLSHTEFTGFLPR 121
            +S + P  + SL  L  +    N+     P    + +   +    + +S    TG +P 
Sbjct: 136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS---KLFTSMTISRNRLTGKIPP 192

Query: 122 RIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHG 181
                            L                                +D S N   G
Sbjct: 193 TF-------------ANLN----------------------------LAFVDLSRNMLEG 211

Query: 182 EISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTAL 241
           + S + G+ K+ + ++L+ NSL  ++         L  LDL  N++ G +P+ L  +  L
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

Query: 242 ALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCS 285
             LN+S+N L G IP+G     F   +Y  N  LCG PL   C+
Sbjct: 271 HSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-ACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 71.0 bits (175), Expect = 3e-14
 Identities = 39/208 (18%), Positives = 62/208 (29%), Gaps = 69/208 (33%)

Query: 1   GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNV 60
           GSFS    ++ +  N L G I  TFAN + L  +DL  N LEG            + +++
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 61  ENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLP 120
             N ++         +   K                        L  +DL +    G LP
Sbjct: 229 AKNSLAFDLG----KVGLSK-----------------------NLNGLDLRNNRIYGTLP 261

Query: 121 RRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFH 180
                 +  +K                              L ++       + S N   
Sbjct: 262 ----QGLTQLKF-----------------------------LHSL-------NVSFNNLC 281

Query: 181 GEISEVLGNFKSLKVLNLSHNSLTGNIP 208
           GEI +  GN +   V   ++N      P
Sbjct: 282 GEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 69.9 bits (172), Expect = 1e-13
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 173 DFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTG--NIPVSFENMTALESLDLS-FNKLDG 229
           D  +  + G + +       +  L+LS  +L     IP S  N+  L  L +   N L G
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91

Query: 230 RIPEQLLSVTALALLNLSYNRLWGRIP 256
            IP  +  +T L  L +++  + G IP
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIP 118

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 196 LNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGR--IPEQLLSVTALALLNLS-YNRLW 252
            +  + +  G +  +      + +LDLS   L     IP  L ++  L  L +   N L 
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 253 GRIP 256
           G IP
Sbjct: 91  GPIP 94

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  153 bits (388), Expect = 8e-42
 Identities = 55/291 (18%), Positives = 104/291 (35%), Gaps = 17/291 (5%)

Query: 1   GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRS-LAKYIKLEVVN 59
               + L  L+L  N +     + F+   HL  LDL  N++   L          +  + 
Sbjct: 377 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 436

Query: 60  VENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFL 119
           +  N            +  L+ L+LR         + +   P + L I+DLS+      +
Sbjct: 437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-I 495

Query: 120 PRRIFPSMEAMKNVDEQG-RLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNR 178
              +   +E ++ +D Q   L  + +          +KG    L ++      ++  SN 
Sbjct: 496 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG----LSHL----HILNLESNG 547

Query: 179 FHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSV 238
           F     EV  +   LK+++L  N+L       F N  +L+SL+L  N +     +     
Sbjct: 548 FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA 607

Query: 239 -TALALLNLSYNRLWGRIPRGNQFNTFQNDS-----YIGNIRLCGEPLTVR 283
              L  L++ +N           F  + N++      + +  LC  P    
Sbjct: 608 FRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYH 658

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  131 bits (331), Expect = 5e-34
 Identities = 48/272 (17%), Positives = 93/272 (34%), Gaps = 22/272 (8%)

Query: 5   TELITLHLENNSLEGHIHNTFAN--ASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVEN 62
           T +  L L N+ L    + TF     ++L  LDL  N L      S A   +LE   +E 
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281

Query: 63  NMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNIT-------FPFQALRIIDLSHTEF 115
           N I   F   +  L  ++ L L+ +        +++           + L  +++   + 
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341

Query: 116 TGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFS 175
            G +   +F  +  +K +     L     +    +    +      L  +       + +
Sbjct: 342 PG-IKSNMFTGLINLKYLS----LSNSFTSLRTLTNETFVSLAHSPLHIL-------NLT 389

Query: 176 SNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVS-FENMTALESLDLSFNKLDGRIPEQ 234
            N+     S+       L+VL+L  N +   +    +  +  +  + LS+NK        
Sbjct: 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 449

Query: 235 LLSVTALALLNLSYNRLWGRIPRGNQFNTFQN 266
              V +L  L L    L       + F   +N
Sbjct: 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  126 bits (319), Expect = 2e-32
 Identities = 50/266 (18%), Positives = 97/266 (36%), Gaps = 16/266 (6%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
             L  L+L++N L      TFA  ++L  L L SN ++        K   L  +++ +N 
Sbjct: 73  PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG 132

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           +S +       L  L+ L+L +N+           F   +L+ ++LS  +   F P   F
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP-GCF 191

Query: 125 PSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEIS 184
            ++  +  +              +  +  ++              R +  S+++     +
Sbjct: 192 HAIGRLFGLF-----------LNNVQLGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSN 239

Query: 185 EVLGNFK--SLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALA 242
                 K  +L +L+LS+N+L      SF  +  LE   L +N +       L  +  + 
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR 299

Query: 243 LLNLSYNRLWGRIPRGNQFNTFQNDS 268
            LNL  +     I          + S
Sbjct: 300 YLNLKRSFTKQSIS-LASLPKIDDFS 324

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  122 bits (307), Expect = 6e-31
 Identities = 54/279 (19%), Positives = 103/279 (36%), Gaps = 33/279 (11%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPL---------PRSLAKYIKL 55
            +L    LE N+++    ++     ++R L+L  +  +  +           S      L
Sbjct: 272 PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331

Query: 56  EVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNI--TFPFQALRIIDLSHT 113
           E +N+E+N I          L  LK L L ++        +    +     L I++L+  
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391

Query: 114 EFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQ-LQNIFVMFRAM 172
           + +  +    F  +  ++ +D    L           I   + G +++ L+NIF     +
Sbjct: 392 KISK-IESDAFSWLGHLEVLD----LGLN-------EIGQELTGQEWRGLENIFE----I 435

Query: 173 DFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTG--NIPVSFENMTALESLDLSFNKLDGR 230
             S N++            SL+ L L   +L    + P  F+ +  L  LDLS N +   
Sbjct: 436 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 495

Query: 231 IPEQLLSVTALALLNLSYNRL---WGRIPRGNQFNTFQN 266
             + L  +  L +L+L +N L   W     G      + 
Sbjct: 496 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG 534

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  109 bits (275), Expect = 1e-26
 Identities = 60/255 (23%), Positives = 94/255 (36%), Gaps = 47/255 (18%)

Query: 2   SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVE 61
              T +  L+L +N L       F   S L SLD+  N +    P    K   L+V+N++
Sbjct: 22  DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81

Query: 62  NNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPR 121
           +N +S          + L  L L SN        +N     + L  +DLSH   +     
Sbjct: 82  HNELSQLSDKTFAFCTNLTELHLMSNSIQKIK--NNPFVKQKNLITLDLSHNGLSS-TKL 138

Query: 122 RIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHG 181
                                                  QL+N+    + +  S+N+   
Sbjct: 139 GTQ-----------------------------------VQLENL----QELLLSNNKIQA 159

Query: 182 EISEVLGNFK--SLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQL---L 236
             SE L  F   SLK L LS N +    P  F  +  L  L L+  +L   + E+L   L
Sbjct: 160 LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 219

Query: 237 SVTALALLNLSYNRL 251
           + T++  L+LS ++L
Sbjct: 220 ANTSIRNLSLSNSQL 234

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  108 bits (272), Expect = 3e-26
 Identities = 48/276 (17%), Positives = 91/276 (32%), Gaps = 31/276 (11%)

Query: 5   TELITLHLENNSLEGHIHNTFANA--SHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVEN 62
             L  L L NN ++            S L+ L+L SN+++   P       +L  + + N
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204

Query: 63  NMISDSFP---CWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFL 119
             +  S     C   + + ++ L L ++Q       + +   +  L ++DLS+      +
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-V 263

Query: 120 PRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVM-----FRAMDF 174
               F  +  ++                  +I          L N+  +     F     
Sbjct: 264 GNDSFAWLPQLEYFF-----------LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312

Query: 175 SSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE- 233
           S               K L+ LN+  N + G     F  +  L+ L LS +    R    
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN 372

Query: 234 ---QLLSVTALALLNLSYNRLWGRIPRGNQFNTFQN 266
                L+ + L +LNL+ N++          + F  
Sbjct: 373 ETFVSLAHSPLHILNLTKNKISKIES-----DAFSW 403

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  105 bits (265), Expect = 2e-25
 Identities = 43/258 (16%), Positives = 82/258 (31%), Gaps = 47/258 (18%)

Query: 1   GSFS--TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVV 58
            +F+  ++L +L +  N++             L+ L+L  N+L     ++ A    L  +
Sbjct: 43  ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102

Query: 59  NVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGF 118
           ++ +N I             L  L L  N        +      + L+ + LS+ +    
Sbjct: 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ--VQLENLQELLLSNNKIQA- 159

Query: 119 LPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNR 178
           L                                       +  L+ +       + SSN+
Sbjct: 160 LKSEELDIF------------------------------ANSSLKKL-------ELSSNQ 182

Query: 179 FHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSF---ENMTALESLDLSFNKLDGRIPEQL 235
                         L  L L++  L  ++          T++ +L LS ++L        
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242

Query: 236 --LSVTALALLNLSYNRL 251
             L  T L +L+LSYN L
Sbjct: 243 LGLKWTNLTMLDLSYNNL 260

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.7 bits (218), Expect = 2e-19
 Identities = 43/256 (16%), Positives = 78/256 (30%), Gaps = 71/256 (27%)

Query: 4   STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
           +         +  L     +     +++  L+L  N+L      +  +Y +L  ++V  N
Sbjct: 3   TVSHEVADCSHLKLTQVPDDLP---TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 64  MISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRI 123
            IS   P       +L                         L++++L H E +  L  + 
Sbjct: 60  TISKLEP---ELCQKLP-----------------------MLKVLNLQHNELSQ-LSDKT 92

Query: 124 FPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEI 183
           F                                     L  +          SN      
Sbjct: 93  FAFCT--------------------------------NLTEL-------HLMSNSIQKIK 113

Query: 184 SEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE--QLLSVTAL 241
           +      K+L  L+LSHN L+     +   +  L+ L LS NK+     E   + + ++L
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173

Query: 242 ALLNLSYNRLWGRIPR 257
             L LS N++    P 
Sbjct: 174 KKLELSSNQIKEFSPG 189

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  117 bits (296), Expect = 1e-29
 Identities = 50/246 (20%), Positives = 97/246 (39%), Gaps = 22/246 (8%)

Query: 10  LHLENNSLEGHIHNTFANASHLRSLDLYSNKL--EGPLPRSLAKYIKLEVVNVENNMISD 67
             L   S +G    +  +   L  LDL  N L  +G   +S      L+ +++  N +  
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI- 386

Query: 68  SFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSM 127
           +       L +L+ L  + +         ++    + L  +D+SHT         IF  +
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGL 444

Query: 128 EAMKNVDEQG-RLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEV 186
            +++ +   G   +     F  +  T        +L+N+  +    D S  +        
Sbjct: 445 SSLEVLKMAGNSFQ---ENFLPDIFT--------ELRNLTFL----DLSQCQLEQLSPTA 489

Query: 187 LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSV-TALALLN 245
             +  SL+VLN+SHN+        ++ + +L+ LD S N +     ++L    ++LA LN
Sbjct: 490 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 549

Query: 246 LSYNRL 251
           L+ N  
Sbjct: 550 LTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  111 bits (279), Expect = 3e-27
 Identities = 47/259 (18%), Positives = 87/259 (33%), Gaps = 26/259 (10%)

Query: 1   GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNV 60
            S++     L L N            +   L+ L   SNK       S      LE +++
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNKGGNAF--SEVDLPSLEFLDL 354

Query: 61  ENNMIS--DSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGF 118
             N +S            + LK L L  N       N       + L  +D  H+     
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN---FLGLEQLEHLDFQHSNLKQM 411

Query: 119 LPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNR 178
               +F S+  +  +D    + +           VA  G    L ++      +  + N 
Sbjct: 412 SEFSVFLSLRNLIYLD----ISHT-------HTRVAFNGIFNGLSSL----EVLKMAGNS 456

Query: 179 FHGEI-SEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS 237
           F      ++    ++L  L+LS   L    P +F ++++L+ L++S N            
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516

Query: 238 VTALALLNLSYNRLWGRIP 256
           + +L +L+ S N +     
Sbjct: 517 LNSLQVLDYSLNHIMTSKK 535

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  104 bits (261), Expect = 7e-25
 Identities = 51/254 (20%), Positives = 94/254 (37%), Gaps = 26/254 (10%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
           T + +  L + ++E      F+     + L+L + K        L    +L   + +   
Sbjct: 282 TNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 339

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
                      L  L+ L L  N      C S   F   +L+ +DLS           + 
Sbjct: 340 AFSE-----VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-----MS 389

Query: 125 PSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQ-LQNIFVMFRAMDFSSNRFHGEI 183
            +   ++       LE++   F   ++    +   F  L+N+      +D S        
Sbjct: 390 SNFLGLEQ------LEHL--DFQHSNLKQMSEFSVFLSLRNL----IYLDISHTHTRVAF 437

Query: 184 SEVLGNFKSLKVLNLSHNSLTGNI-PVSFENMTALESLDLSFNKLDGRIPEQLLSVTALA 242
           + +     SL+VL ++ NS   N  P  F  +  L  LDLS  +L+   P    S+++L 
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497

Query: 243 LLNLSYNRLWGRIP 256
           +LN+S+N  +    
Sbjct: 498 VLNMSHNNFFSLDT 511

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  101 bits (254), Expect = 6e-24
 Identities = 41/230 (17%), Positives = 75/230 (32%), Gaps = 44/230 (19%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIK-LEVVNVENN 63
           T L  L L  N +   + + F     L  LD   + L+     S+   ++ L  +++ + 
Sbjct: 373 TSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

Query: 64  MISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRI 123
               +F      LS L++L +  N F         T   + L  +DLS  +    L    
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT-ELRNLTFLDLSQCQLEQ-LSPTA 489

Query: 124 FPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEI 183
           F S+           L+ +                              + S N F    
Sbjct: 490 FNSLS---------SLQVL------------------------------NMSHNNFFSLD 510

Query: 184 SEVLGNFKSLKVLNLSHNSLTGNIPVSFENM-TALESLDLSFNKLDGRIP 232
           +       SL+VL+ S N +  +     ++  ++L  L+L+ N       
Sbjct: 511 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  101 bits (254), Expect = 6e-24
 Identities = 33/256 (12%), Positives = 83/256 (32%), Gaps = 18/256 (7%)

Query: 2   SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEG-PLPRSLAKYIKLEVVNV 60
           S  + L  L     +L    +    +   L+ L++  N ++   LP   +    LE +++
Sbjct: 97  SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 61  ENNMISDSFPCWMGSLSELKI----LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFT 116
            +N I   +   +  L ++ +    L L  N  +     +   F    L  + L +   +
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA---FKEIRLHKLTLRNNFDS 213

Query: 117 GFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSS 176
             + +     +  ++          +G    + ++    K     L N+         + 
Sbjct: 214 LNVMKTCIQGLAGLEVHRL-----VLGEFRNEGNLEKFDKSALEGLCNL--TIEEFRLAY 266

Query: 177 NR-FHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQL 235
              +  +I ++     ++   +L   ++      S+      + L+L   K       +L
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKL 324

Query: 236 LSVTALALLNLSYNRL 251
            S+  L   +      
Sbjct: 325 KSLKRLTFTSNKGGNA 340

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 98.6 bits (246), Expect = 5e-23
 Identities = 42/272 (15%), Positives = 77/272 (28%), Gaps = 54/272 (19%)

Query: 4   STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
                 L L  N L      +F +   L+ LDL   +++     +      L  + +  N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 64  MISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQA---LRIIDLSHTEFTGFLP 120
            I          LS L+ LV            S   FP      L+ ++++H     F  
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNL-----ASLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 121 RRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFH 180
              F ++                                  L+++       D SSN+  
Sbjct: 142 PEYFSNLT--------------------------------NLEHL-------DLSSNKIQ 162

Query: 181 GEISEVLGNFKSLKV----LNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLL 236
                 L     + +    L+LS N +    P +F+ +  L  L L  N     + +  +
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCI 221

Query: 237 -SVTALALLNLSYNRLWGRIP-RGNQFNTFQN 266
             +  L +  L                +  + 
Sbjct: 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 93.2 bits (232), Expect = 3e-21
 Identities = 37/269 (13%), Positives = 72/269 (26%), Gaps = 47/269 (17%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
            EL  L L    ++      + + SHL +L L  N ++     + +    L+ +      
Sbjct: 52  PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           ++      +G L  LK L +  N           +     L  +DLS  +        + 
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 125 PSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEIS 184
                                                L  + ++  ++D S N  +    
Sbjct: 171 V------------------------------------LHQMPLLNLSLDLSLNPMNFIQP 194

Query: 185 EVLGNFKSLKVLNLSHNSLTGNIP-VSFENMTALESLDLSFNKLDGR------IPEQLLS 237
                   L  L L +N  + N+     + +  LE   L   +              L  
Sbjct: 195 GAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253

Query: 238 VTALALLNLSYNRLWGRIPRGNQFNTFQN 266
           +  L +       L       +  + F  
Sbjct: 254 LCNLTIEEFRLAYLDYY--LDDIIDLFNC 280

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 87.0 bits (216), Expect = 4e-19
 Identities = 54/287 (18%), Positives = 95/287 (33%), Gaps = 55/287 (19%)

Query: 5   TELITLHLENNSLEG-HIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVE-- 61
             L  L++ +N ++   +   F+N ++L  LDL SNK++      L    ++ ++N+   
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 62  --NNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGF- 118
              N ++            L  L LR+N                 L +  L   EF    
Sbjct: 184 LSLNPMN-FIQPGAFKEIRLHKLTLRNNFDS-LNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 119 -LPRRIFPSMEAMKNVDEQG-RLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAM---- 172
            L +    ++E + N+  +  RL Y+                D+ L +I  +F  +    
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYL----------------DYYLDDIIDLFNCLTNVS 285

Query: 173 --DFSSNRFHGEISEVLGNFKSLKVLNLSHNSLT-------------------GNIPVSF 211
                S                 + L L +                       G    S 
Sbjct: 286 SFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 343

Query: 212 ENMTALESLDLSFNKLD--GRIPEQLLSVTALALLNLSYNRLWGRIP 256
            ++ +LE LDLS N L   G   +     T+L  L+LS+N +     
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 390

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 83.5 bits (207), Expect = 6e-18
 Identities = 37/238 (15%), Positives = 72/238 (30%), Gaps = 49/238 (20%)

Query: 4   STELITLHLENNSLEGHI-HNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVEN 62
             +L  L  ++++L+     + F +  +L  LD+                  LEV+ +  
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 63  NMISDSF-PCWMGSLSELKILVLRSNQFDCPPCNSNITFP-FQALRIIDLSHTEFTGFLP 120
           N   ++F P     L  L  L L   Q +         F    +L+++++SH  F   L 
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLS---PTAFNSLSSLQVLNMSHNNFFS-LD 510

Query: 121 RRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFH 180
              +  +           L+                               +D+S N   
Sbjct: 511 TFPYKCLN---------SLQV------------------------------LDYSLNHIM 531

Query: 181 GEISEVLGN-FKSLKVLNLSHNSLTGNIPVS--FENMTALESLDLSFNKLDGRIPEQL 235
               + L +   SL  LNL+ N            + +     L +   +++   P   
Sbjct: 532 TSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.1 bits (193), Expect = 3e-16
 Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 14/124 (11%)

Query: 163 QNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDL 222
            N+    + +D S N      S    +F  L+VL+LS   +      ++++++ L +L L
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 223 SFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPR--------------GNQFNTFQNDS 268
           + N +          +++L  L      L                     N   +F+   
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 269 YIGN 272
           Y  N
Sbjct: 144 YFSN 147

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 33/222 (14%), Positives = 65/222 (29%), Gaps = 45/222 (20%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPL-PRSLAKYIKLEVVNVENN 63
             LI L + +       +  F   S L  L +  N  +    P    +   L  +++   
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

Query: 64  MISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRI 123
            +    P    SLS L++L +  N F      +       +L+++D S         +  
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLD--TFPYKCLNSLQVLDYSLNHIMTSKKQ-- 536

Query: 124 FPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHG-- 181
                                                +LQ+       ++ + N F    
Sbjct: 537 -------------------------------------ELQHFPSSLAFLNLTQNDFACTC 559

Query: 182 EISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLS 223
           E    L   K  + L +    +    P   + M  + SL+++
Sbjct: 560 EHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP-VLSLNIT 600

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  117 bits (294), Expect = 3e-29
 Identities = 45/268 (16%), Positives = 79/268 (29%), Gaps = 32/268 (11%)

Query: 1   GSFSTELITLHLENNSLEGHIHNTFA-NASHLRSLDLYSNKLEG-------PLPRSLAKY 52
             F+ ++  L   +N L+   +   A + S + ++D   N++         PL  +  K 
Sbjct: 373 CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432

Query: 53  IKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPF-----QALRI 107
           I +  +N+ NN IS        + S L  + L  N     P NS             L  
Sbjct: 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTS 492

Query: 108 IDLSHTEFTGFLPRRIFPSMEAMKNVD-EQGRLEYMGRAFCDESITVAMKGHDFQLQN-- 164
           IDL   + T         ++  +  +D                                 
Sbjct: 493 IDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF-----PTQP--------LNSSTLK 539

Query: 165 IFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSF 224
            F +    D   NR   E  E +    SL  L +  N +   +         +  LD+  
Sbjct: 540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKD 596

Query: 225 NKLDGRIPEQLLSVTALALLNLSYNRLW 252
           N         +       +  L Y++  
Sbjct: 597 NPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  117 bits (294), Expect = 3e-29
 Identities = 52/266 (19%), Positives = 99/266 (37%), Gaps = 45/266 (16%)

Query: 2   SFSTELITLHLENNSL-EGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNV 60
               ++  +++  N+L    +  +      L  L+   N+LEG LP +    IKL  +N+
Sbjct: 302 PVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360

Query: 61  ENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLP 120
             N I++    + G   +++ L    N+    P   +       +  ID S+ E    + 
Sbjct: 361 AYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKS-VSVMSAIDFSYNEIGS-VD 418

Query: 121 RRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFH 180
            + F  ++                               F+  N+     +++ S+N+  
Sbjct: 419 GKNFDPLDP----------------------------TPFKGINV----SSINLSNNQIS 446

Query: 181 GEISEVLGNFKSLKVLNLSHNSLTG-------NIPVSFENMTALESLDLSFNKLDGRIPE 233
               E+      L  +NL  N LT        +   +F+N   L S+DL FNKL     +
Sbjct: 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506

Query: 234 -QLLSVTALALLNLSYNRLWGRIPRG 258
            +  ++  L  ++LSYN    + P  
Sbjct: 507 FRATTLPYLVGIDLSYNSF-SKFPTQ 531

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  114 bits (288), Expect = 2e-28
 Identities = 42/270 (15%), Positives = 89/270 (32%), Gaps = 44/270 (16%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
            +L  L    N LEG +   F +   L SL+L  N++            ++E ++  +N 
Sbjct: 330 KKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK 388

Query: 65  ISDSFPCW--MGSLSELKILVLRSNQFDCPPCNSNITFP-----FQALRIIDLSHTEFTG 117
           +    P      S+S +  +    N+       +             +  I+LS+ + + 
Sbjct: 389 LK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK 447

Query: 118 FLPRRIFPSMEAMKNVD---------EQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVM 168
             P+ +F +   + +++          +  L+     F                  +   
Sbjct: 448 -FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK-------------NTYLL--- 490

Query: 169 FRAMDFSSNRFHGEISEV-LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESL------D 221
             ++D   N+      +        L  ++LS+NS +   P    N + L+        D
Sbjct: 491 -TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRD 548

Query: 222 LSFNKLDGRIPEQLLSVTALALLNLSYNRL 251
              N+     PE +    +L  L +  N +
Sbjct: 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDI 578

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  110 bits (277), Expect = 5e-27
 Identities = 44/285 (15%), Positives = 86/285 (30%), Gaps = 66/285 (23%)

Query: 5   TELITLHLENNSL--------EGHIHNTFANASHLRSLDLYSNKL-EGPLPRSLAKYIKL 55
            E+  +++  N          +            ++ + +  N L   P+  SL K  KL
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332

Query: 56  EVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEF 115
            ++    N +    P   GS  +L  L L  NQ    P  +N     + +  +  +H + 
Sbjct: 333 GMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIP--ANFCGFTEQVENLSFAHNKL 389

Query: 116 TGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFS 175
              +P                                         +  +     A+DFS
Sbjct: 390 KY-IPNIFDAK----------------------------------SVSVM----SAIDFS 410

Query: 176 SNRFHG-------EISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 228
            N            +        ++  +NLS+N ++      F   + L S++L  N L 
Sbjct: 411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470

Query: 229 G-------RIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQN 266
                      E   +   L  ++L +N+L  ++    +  T   
Sbjct: 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFRATTLPY 514

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  104 bits (262), Expect = 5e-25
 Identities = 33/267 (12%), Positives = 81/267 (30%), Gaps = 49/267 (18%)

Query: 4   STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
           + +   +   +N++   +       + LR   + ++           +    E       
Sbjct: 182 TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE-----YA 235

Query: 64  MISDSFPCWMGSLSELKILVLRSNQFDC--PPCNSNITFPFQALRIIDLSHTEFTGFLPR 121
               +      +L +L  + + +       P     +      +++I+++          
Sbjct: 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP----EMQLINVACNRGIS---- 287

Query: 122 RIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRF-H 180
                 +  + + +    E                    ++Q I           N    
Sbjct: 288 -GEQLKDDWQALADAPVGE--------------------KIQII-------YIGYNNLKT 319

Query: 181 GEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSV-T 239
             +   L   K L +L   +N L G +P +F +   L SL+L++N++   IP        
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE-IPANFCGFTE 377

Query: 240 ALALLNLSYNRLWGRIPRGNQFNTFQN 266
            +  L+ ++N+L   IP      +   
Sbjct: 378 QVENLSFAHNKL-KYIPNIFDAKSVSV 403

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  100 bits (250), Expect = 2e-23
 Identities = 32/265 (12%), Positives = 83/265 (31%), Gaps = 62/265 (23%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKL--------EGPLPRSLAKYIKLE 56
            +L  + + N      +         ++ +++  N+         +           K++
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308

Query: 57  VVNVENNMISD-SFPCWMGSLSELKILVLRSNQF-DCPPCNSNITFPFQALRIIDLSHTE 114
           ++ +  N +        +  + +L +L    NQ     P   +       L  ++L++ +
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEI----KLASLNLAYNQ 364

Query: 115 FTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDF 174
            T  +P                G  E                    Q++N+        F
Sbjct: 365 ITE-IPANFC------------GFTE--------------------QVENL-------SF 384

Query: 175 SSNRFHGEISEV-LGNFKSLKVLNLSHNSLTG-------NIPVSFENMTALESLDLSFNK 226
           + N+     +     +   +  ++ S+N +          +  +      + S++LS N+
Sbjct: 385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444

Query: 227 LDGRIPEQLLSVTALALLNLSYNRL 251
           +     E   + + L+ +NL  N L
Sbjct: 445 ISKFPKELFSTGSPLSSINLMGNML 469

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 93.6 bits (233), Expect = 3e-21
 Identities = 30/277 (10%), Positives = 74/277 (26%), Gaps = 54/277 (19%)

Query: 4   STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGP----LPRSLAKYIKLEVVN 59
           +  +  L LE     G + +     + L  L L S+  +       P+ ++  +  E   
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139

Query: 60  VENNMISDSFPCWMG--SLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTG 117
                   +F  +      S+L    + S+           +        I       T 
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI--KKSSRITLKDTQIGQLSNNITF 197

Query: 118 FLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSN 177
            + + +                                     +L  +    R     ++
Sbjct: 198 -VSKAVM------------------------------------RLTKL----RQFYMGNS 216

Query: 178 RFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS 237
            F  E              N  +        + ++N+  L  +++       ++P  L +
Sbjct: 217 PFVAENICEAWE-----NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271

Query: 238 VTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIR 274
           +  + L+N++ NR        + +    +      I+
Sbjct: 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 93.2 bits (232), Expect = 4e-21
 Identities = 25/263 (9%), Positives = 75/263 (28%), Gaps = 59/263 (22%)

Query: 5   TELITLHLENNSLEGHI--HNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVEN 62
                        +     ++   + S L    + S+  +  + +S    +K   +   +
Sbjct: 133 MSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS 192

Query: 63  NMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRR 122
           N I+      +  L++L+   + ++ F             +A    +  + +       +
Sbjct: 193 NNIT-FVSKAVMRLTKLRQFYMGNSPFVAEN-------ICEAWENENSEYAQQYKTEDLK 244

Query: 123 IFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGE 182
                                                  L+++      ++  +     +
Sbjct: 245 WD------------------------------------NLKDL----TDVEVYNCPNLTK 264

Query: 183 ISEVLGNFKSLKVLNLSHNSLT--------GNIPVSFENMTALESLDLSFNKL-DGRIPE 233
           +   L     ++++N++ N                       ++ + + +N L    +  
Sbjct: 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324

Query: 234 QLLSVTALALLNLSYNRLWGRIP 256
            L  +  L +L   YN+L G++P
Sbjct: 325 SLQKMKKLGMLECLYNQLEGKLP 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 78.2 bits (193), Expect = 5e-16
 Identities = 20/235 (8%), Positives = 46/235 (19%), Gaps = 70/235 (29%)

Query: 24  TFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILV 83
           +  +   +  L L      G +P ++                        G L+EL++L 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAI------------------------GQLTELEVLA 111

Query: 84  LRSNQFDCPPCNSNIT--FPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEY 141
           L S+                  +          +                          
Sbjct: 112 LGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPR---------------- 155

Query: 142 MGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHN 201
                                   F        +S+     I +          +    N
Sbjct: 156 ----------------------EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN 193

Query: 202 SLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIP 256
           ++T  +  +   +T L    +  +        +          N  Y + +    
Sbjct: 194 NITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWE-----NENSEYAQQYKTED 242

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 4/84 (4%)

Query: 187 LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDG----RIPEQLLSVTALA 242
           L +   +  L+L     +G +P +   +T LE L L  +          P+ + +  +  
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 243 LLNLSYNRLWGRIPRGNQFNTFQN 266
                           +    F +
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSD 160

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 168 MFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 227
           ++ A++  +    G  ++   N+      N   +       VS  +   +  L L     
Sbjct: 38  IWDALNGKNWSQQGFGTQPGANWNF----NKELDMWGAQPGVSLNSNGRVTGLSLEGFGA 93

Query: 228 DGRIPEQLLSVTALALLNLSYNRLWGRIP 256
            GR+P+ +  +T L +L L  +       
Sbjct: 94  SGRVPDAIGQLTELEVLALGSHGEKVNER 122

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 11/88 (12%), Positives = 30/88 (34%), Gaps = 4/88 (4%)

Query: 10  LHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSF 69
              + N               L  L + SN +   +   +     + V+++++N      
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKITP--NISVLDIKDNPNISID 603

Query: 70  PCWMGSLSELKILVLRSNQF-DCPPCNS 96
             ++    E  + +L  ++  D   C++
Sbjct: 604 LSYVCPYIEAGMYMLFYDKTQDIRGCDA 631

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  113 bits (284), Expect = 6e-28
 Identities = 47/256 (18%), Positives = 81/256 (31%), Gaps = 18/256 (7%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
             L  L      +         N   L SL L SN +            KL+V++ +NN 
Sbjct: 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164

Query: 65  ISDSFPCWMGSLSELKILVLR--SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRR 122
           I       M SL +   L L    N        +   F     + ++   T+    + + 
Sbjct: 165 IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA---FDSAVFQSLNFGGTQNLLVIFKG 221

Query: 123 IFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGE 182
           +  S            L      F D             L  + V   +++   + F   
Sbjct: 222 LKNS--------TIQSLWLGT--FEDMDDEDISPAVFEGLCEMSV--ESINLQKHYFFNI 269

Query: 183 ISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALA 242
            S     F  L+ L+L+   L+  +P     ++ L+ L LS NK +        +  +L 
Sbjct: 270 SSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328

Query: 243 LLNLSYNRLWGRIPRG 258
            L++  N     +  G
Sbjct: 329 HLSIKGNTKRLELGTG 344

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  112 bits (282), Expect = 1e-27
 Identities = 52/273 (19%), Positives = 97/273 (35%), Gaps = 29/273 (10%)

Query: 1   GSFS--TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVV 58
            +F   + L  L L    L   + +     S L+ L L +NK E     S + +  L  +
Sbjct: 272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330

Query: 59  NVENNMISDS-FPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTG 117
           +++ N          + +L  L+ L L  +  +   C +        L+ ++LS+ E   
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390

Query: 118 FLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQ-LQNIFVMFRAMDFSS 176
            L    F     ++ +D    L +         + V      FQ L  +    + ++ S 
Sbjct: 391 -LKTEAFKECPQLELLD----LAFT-------RLKVKDAQSPFQNLHLL----KVLNLSH 434

Query: 177 NRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPV---SFENMTALESLDLSFNKLDGRIPE 233
           +       ++     +L+ LNL  N           S + +  LE L LSF  L      
Sbjct: 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494

Query: 234 QLLSVTALALLNLSYNRLWGRIPRGNQFNTFQN 266
              S+  +  ++LS+NRL       +      +
Sbjct: 495 AFTSLKMMNHVDLSHNRL-----TSSSIEALSH 522

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 97.0 bits (242), Expect = 2e-22
 Identities = 48/267 (17%), Positives = 90/267 (33%), Gaps = 30/267 (11%)

Query: 1   GSFS--TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVV 58
            +FS    L  L L    +     +TF +   L +L L +N L      +L+    L+ +
Sbjct: 51  TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110

Query: 59  NVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGF 118
                 IS      + +   L+ L L SN            FP + L+++D  +      
Sbjct: 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK--LPKGFPTEKLKVLDFQNNAIHY- 167

Query: 119 LPRRIFPSMEAMKNVD---EQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFS 175
           L +    S++   N+        +  +     D                   +F++++F 
Sbjct: 168 LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-----------------SAVFQSLNFG 210

Query: 176 SNRFHGEISEVLGN--FKSLKVLNLSHNSLTGNIPVSFENMTA--LESLDLSFNKLDGRI 231
             +    I + L N   +SL +            P  FE +    +ES++L  +      
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270

Query: 232 PEQLLSVTALALLNLSYNRLWGRIPRG 258
                  + L  L+L+   L   +P G
Sbjct: 271 SNTFHCFSGLQELDLTATHL-SELPSG 296

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 96.2 bits (240), Expect = 3e-22
 Identities = 48/252 (19%), Positives = 86/252 (34%), Gaps = 47/252 (18%)

Query: 5   TELITLHLENNSLEGHIHNTFAN--ASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVEN 62
             L     E+   E      F       + S++L  +        +   +  L+ +++  
Sbjct: 228 QSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA 287

Query: 63  NMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRR 122
             +S   P  +  LS LK LVL +N+F+     S   FP  +L  + +        L   
Sbjct: 288 THLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP--SLTHLSIKGNTKRLELGTG 344

Query: 123 IFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFH-- 180
              ++E ++ +D                                        S +     
Sbjct: 345 CLENLENLRELD---------------------------------------LSHDDIETS 365

Query: 181 GEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS-VT 239
              +  L N   L+ LNLS+N        +F+    LE LDL+F +L  +  +     + 
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425

Query: 240 ALALLNLSYNRL 251
            L +LNLS++ L
Sbjct: 426 LLKVLNLSHSLL 437

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 94.3 bits (235), Expect = 2e-21
 Identities = 41/274 (14%), Positives = 90/274 (32%), Gaps = 25/274 (9%)

Query: 4   STELITLHLENNSLEGHIHNTFANASHLR--SLDLYSNKLEGPLPRSLAKYIKLEVVNVE 61
           + +L  L  +NN++        ++       SL+L  N + G +          + +N  
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFG 210

Query: 62  NNMISDSFPCWMG--SLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFL 119
                      +   ++  L +        +             ++  I+L    F   +
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-I 269

Query: 120 PRRIFPSMEAMKNVD-EQGRLEYMGRAFCDES-----------ITVAMKGHDFQLQNIFV 167
               F     ++ +D     L  +       S                +       ++  
Sbjct: 270 SSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL-- 327

Query: 168 MFRAMDFSSNRFHGEI-SEVLGNFKSLKVLNLSHNSLT--GNIPVSFENMTALESLDLSF 224
               +    N    E+ +  L N ++L+ L+LSH+ +       +   N++ L+SL+LS+
Sbjct: 328 --THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 225 NKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG 258
           N+      E       L LL+L++ RL  +  + 
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.4 bits (204), Expect = 2e-17
 Identities = 35/256 (13%), Positives = 72/256 (28%), Gaps = 23/256 (8%)

Query: 1   GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNV 60
           G+       L    N L    + TF+   +L  LDL   ++      +     +L+ + +
Sbjct: 29  GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVL 88

Query: 61  ENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPF-QALRIIDLSHTEFTGFL 119
             N +       +     LK L               I     + L  + L     +  +
Sbjct: 89  TANPLIFMAETALSGPKALKHLFFIQTGISSID---FIPLHNQKTLESLYLGSNHISS-I 144

Query: 120 PRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRF 179
                   E +K +D           F + +I    K     LQ    +   ++ + N  
Sbjct: 145 KLPKGFPTEKLKVLD-----------FQNNAIHYLSKEDMSSLQQATNLS--LNLNGNDI 191

Query: 180 HGEISEVLGNFKSLKVLNLSHNSLTGNIP--VSFENMTALESLDLSFNKLDGRIPEQLLS 237
              I     +    + LN         I   +    + +L          +   P     
Sbjct: 192 -AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250

Query: 238 VTALAL--LNLSYNRL 251
           +  +++  +NL  +  
Sbjct: 251 LCEMSVESINLQKHYF 266

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 33/246 (13%), Positives = 62/246 (25%), Gaps = 68/246 (27%)

Query: 29  SHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQ 88
           +    L+   N L      + ++ I L  +++    I         +             
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE---DTFQSQH-------- 81

Query: 89  FDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCD 148
                           L  + L+       +        +A+K++               
Sbjct: 82  ---------------RLDTLVLTANPLIF-MAETALSGPKALKHLF-------------- 111

Query: 149 ESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIP 208
                                    F            L N K+L+ L L  N ++    
Sbjct: 112 -------------------------FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL 146

Query: 209 VSFENMTALESLDLSFNKLDGRIPEQLLSVTALAL--LNLSYNRLWGRIPRGNQFNTFQN 266
                   L+ LD   N +     E + S+       LNL+ N + G  P       FQ+
Sbjct: 147 PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQS 206

Query: 267 DSYIGN 272
            ++ G 
Sbjct: 207 LNFGGT 212

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 21/79 (26%)

Query: 194 KVLNLSHNSLT---GNIPVS------------------FENMTALESLDLSFNKLDGRIP 232
           K  N  +  L    G +P S                  F  +  L  LDL+  ++     
Sbjct: 15  KTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE 74

Query: 233 EQLLSVTALALLNLSYNRL 251
           +   S   L  L L+ N L
Sbjct: 75  DTFQSQHRLDTLVLTANPL 93

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  107 bits (269), Expect = 7e-26
 Identities = 37/285 (12%), Positives = 91/285 (31%), Gaps = 44/285 (15%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGP---------LPRSLAKYIKL 55
            +L  + L N      + +   +   L+SL++  N+             L        K+
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

Query: 56  EVVNVENNMISD-SFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTE 114
           ++  +  N + +      +  + +L +L    N+                L  + L + +
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNV----KLTDLKLDYNQ 606

Query: 115 FTGFLPRRIFPSMEAMKNVDEQG-RLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMD 173
               +P       + ++ +     +L+Y+   F  +S+          + ++       D
Sbjct: 607 IEE-IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY--------VMGSV-------D 650

Query: 174 FSSNRFHGEISEVLG-----NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 228
           FS N+   E   +          +   + LS+N +       F   + + ++ LS N + 
Sbjct: 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710

Query: 229 -------GRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQN 266
                          +   L  ++L +N+L   +    +  T   
Sbjct: 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLPY 754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  106 bits (267), Expect = 1e-25
 Identities = 42/257 (16%), Positives = 86/257 (33%), Gaps = 49/257 (19%)

Query: 5   TELITLHLENNSLEG-HIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
            ++   ++  N+LE      +      L  LD   NK+      +    +KL  + ++ N
Sbjct: 548 PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL--EAFGTNVKLTDLKLDYN 605

Query: 64  MISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRI 123
            I +    +     +++ L    N+    P   N       +  +D S+ +      R I
Sbjct: 606 QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAK-SVYVMGSVDFSYNKIGS-EGRNI 663

Query: 124 FPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEI 183
             SM+  K +                               +         S N      
Sbjct: 664 SCSMDDYKGI---------------------------NASTV-------TLSYNEIQKFP 689

Query: 184 SEVLGNFKSLKVLNLSHNSLT-------GNIPVSFENMTALESLDLSFNKLDGRIPEQLL 236
           +E+      +  + LS+N +T            +++N   L ++DL FNKL   + +   
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFR 748

Query: 237 --SVTALALLNLSYNRL 251
             ++  L+ +++SYN  
Sbjct: 749 ATTLPYLSNMDVSYNCF 765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  105 bits (263), Expect = 3e-25
 Identities = 40/297 (13%), Positives = 92/297 (30%), Gaps = 42/297 (14%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIK-LEVVNVENN 63
            +L  L   +N +  H+   F     L  L L  N++E  +P     +   +E +   +N
Sbjct: 573 VKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHN 629

Query: 64  MISDSFP--CWMGSLSELKILVLRSNQFDCPPCNSNITFPFQA---LRIIDLSHTEFTGF 118
            +    P      S+  +  +    N+      N + +           + LS+ E    
Sbjct: 630 KLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK- 687

Query: 119 LPRRIFPSMEAMKNVDEQG-RLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSN 177
            P  +F +   +  +      +  +      E+      G+      +      +D   N
Sbjct: 688 FPTELFATGSPISTIILSNNLMTSI-----PENSLKPKDGNYKNTYLL----TTIDLRFN 738

Query: 178 RFHGEISEV-LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSF------NKLDGR 230
           +      +        L  +++S+N  +   P    N + L++  +        N++  +
Sbjct: 739 KLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797

Query: 231 IPEQLLSVTALALLNLSYNRLWGRIP------------RGNQFNTFQNDSYIGNIRL 275
            P  + +  +L  L +  N +  ++               N   +    S    I  
Sbjct: 798 WPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPNISIDVTSVCPYIEA 853

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  104 bits (262), Expect = 5e-25
 Identities = 45/268 (16%), Positives = 76/268 (28%), Gaps = 60/268 (22%)

Query: 1   GSFSTELITLHLENNSLEG-HIHNTFANASHLRSLDLYSNKLEG-----PLPRSLAKYIK 54
            +F+ ++  L   +N L+         +   + S+D   NK+              K I 
Sbjct: 615 CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674

Query: 55  LEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPF-----QALRIID 109
              V +  N I         + S +  ++L +N     P NS             L  ID
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734

Query: 110 LSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMF 169
           L   + T  L      +                                   L  +    
Sbjct: 735 LRFNKLTS-LSDDFRAT----------------------------------TLPYL---- 755

Query: 170 RAMDFSSNRFHGEISEVLGNFKSLKVLNLSH------NSLTGNIPVSFENMTALESLDLS 223
             MD S N F         N   LK   + H      N +    P       +L  L + 
Sbjct: 756 SNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814

Query: 224 FNKLDGRIPEQLLSVTALALLNLSYNRL 251
            N +  ++ E+L     L +L+++ N  
Sbjct: 815 SNDI-RKVDEKLT--PQLYILDIADNPN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  100 bits (251), Expect = 1e-23
 Identities = 31/257 (12%), Positives = 77/257 (29%), Gaps = 33/257 (12%)

Query: 7   LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEG-PLPRSLAKYIKLEVVNVENNMI 65
           +  L L     +G + +     + L+ L   ++            +         ++ + 
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 66  SDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPR--RI 123
                 ++     L +  L  +  +     +    P +    I L  T+      R   I
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAIN----RNPEMKPIKKDSRISLKDTQIGNLTNRITFI 440

Query: 124 FPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEI 183
             +++ +        L+ +                 F   NI V +   +    + +   
Sbjct: 441 SKAIQRLTK------LQIIY-----------FANSPFTYDNIAVDWEDANSDYAKQYENE 483

Query: 184 SEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDG---------RIPEQ 234
                N K L  + L +      +P    ++  L+SL+++ N+            R+ + 
Sbjct: 484 ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543

Query: 235 LLSVTALALLNLSYNRL 251
             +   + +  + YN L
Sbjct: 544 EDTGPKIQIFYMGYNNL 560

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 98.0 bits (244), Expect = 9e-23
 Identities = 35/269 (13%), Positives = 81/269 (30%), Gaps = 60/269 (22%)

Query: 4   STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
           + +    + +      +   +++N   L  ++LY+      LP  L    +L+ +N+  N
Sbjct: 466 AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525

Query: 64  MISD---------SFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTE 114
                               +  +++I  +  N  +  P ++++      L ++D  H +
Sbjct: 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL-QKMVKLGLLDCVHNK 584

Query: 115 FTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDF 174
                      +                                   L ++         
Sbjct: 585 VR------HLEAFGTNVK-----------------------------LTDL-------KL 602

Query: 175 SSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIP--VSFENMTALESLDLSFNKLDGRIP 232
             N+      +       ++ L  SHN L   IP   + +++  + S+D S+NK+     
Sbjct: 603 DYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGR 661

Query: 233 EQLLSVTALAL-----LNLSYNRLWGRIP 256
               S+          + LSYN +     
Sbjct: 662 NISCSMDDYKGINASTVTLSYNEIQKFPT 690

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 95.3 bits (237), Expect = 1e-21
 Identities = 33/254 (12%), Positives = 83/254 (32%), Gaps = 28/254 (11%)

Query: 15  NSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMG 74
           +           N   +  L L     +G +P ++ +  +L+V++   +  + S   +  
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 75  SLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFT-----GFLPRRIFPSMEA 129
                 +   R ++              Q L + DL             + +    S++ 
Sbjct: 369 EELTPDMSEERKHRIRMHY-KKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKD 427

Query: 130 MKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGN 189
            +  +   R+ ++ +A               +L  +    + + F+++ F  +   V   
Sbjct: 428 TQIGNLTNRITFISKAI-------------QRLTKL----QIIYFANSPFTYDNIAV--- 467

Query: 190 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYN 249
               +  N  +     N  +S+ N+  L  ++L       ++P+ L  +  L  LN++ N
Sbjct: 468 --DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525

Query: 250 RLWGRIPRGNQFNT 263
           R          +  
Sbjct: 526 RGISAAQLKADWTR 539

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 94.6 bits (235), Expect = 1e-21
 Identities = 39/257 (15%), Positives = 69/257 (26%), Gaps = 58/257 (22%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
           T+L  ++  N+            A      +    K       S +    L  V + N  
Sbjct: 448 TKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP 502

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPP--CNSNITFP-----FQALRIIDLSHTEFTG 117
                P ++  L EL+ L +  N+                       ++I  + +     
Sbjct: 503 NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562

Query: 118 FLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSN 177
           F                                          ++  +      +D   N
Sbjct: 563 FPASASL-----------------------------------QKMVKL----GLLDCVHN 583

Query: 178 RFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVS-FENMTALESLDLSFNKLDGRIPE--Q 234
           +    +    G    L  L L +N +   IP         +E L  S NKL   IP    
Sbjct: 584 KVR-HLEA-FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFN 639

Query: 235 LLSVTALALLNLSYNRL 251
             SV  +  ++ SYN++
Sbjct: 640 AKSVYVMGSVDFSYNKI 656

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 88.0 bits (218), Expect = 3e-19
 Identities = 34/267 (12%), Positives = 75/267 (28%), Gaps = 49/267 (18%)

Query: 4   STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
           S +   +    N +   I       + L+ +   ++             +  E  N +  
Sbjct: 424 SLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIA-----VDWEDANSDYA 477

Query: 64  MISDSFPCWMGSLSELKILVLRSNQFDC--PPCNSNITFPFQALRIIDLSHTEFTGFLPR 121
              ++      +L +L  + L +       P    ++      L+ ++++          
Sbjct: 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP----ELQSLNIACNRGISAAQ- 532

Query: 122 RIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHG 181
                         +     +                      I    +      N    
Sbjct: 533 -------------LKADWTRLADDED-------------TGPKI----QIFYMGYNNLEE 562

Query: 182 -EISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT- 239
              S  L     L +L+  HN +  ++  +F     L  L L +N+++  IPE   + T 
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEE-IPEDFCAFTD 619

Query: 240 ALALLNLSYNRLWGRIPRGNQFNTFQN 266
            +  L  S+N+L   IP      +   
Sbjct: 620 QVEGLGFSHNKLKY-IPNIFNAKSVYV 645

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 73.4 bits (180), Expect = 2e-14
 Identities = 30/239 (12%), Positives = 71/239 (29%), Gaps = 35/239 (14%)

Query: 5   TELITLHLENNSLEGHIHNTFA-----NASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVN 59
             + ++    N +     N           +  ++ L  N+++       A    +  + 
Sbjct: 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII 703

Query: 60  VENNMISD-------SFPCWMGSLSELKILVLRSNQFDCPPCNSNITF-PFQALRIIDLS 111
           + NN+++               +   L  + LR N+        +        L  +D+S
Sbjct: 704 LSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS--DDFRATTLPYLSNMDVS 761

Query: 112 HTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCD---ESITVAMKGHDFQLQNIFVM 168
           +  F+   P +   +   +K    + + +  G          IT           ++   
Sbjct: 762 YNCFSS-FPTQPL-NSSQLKAFGIRHQRDAEGNRILRQWPTGIT--------TCPSL--- 808

Query: 169 FRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 227
              +   SN    ++ E L     L +L+++ N        S           L ++K 
Sbjct: 809 -IQLQIGSNDI-RKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.7 bits (147), Expect = 3e-10
 Identities = 10/86 (11%), Positives = 26/86 (30%)

Query: 172 MDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRI 231
            +   + +  +    L N   +  L+L+     G +P +   +T L+ L    +      
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 232 PEQLLSVTALALLNLSYNRLWGRIPR 257
                      +     +R+     +
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKK 389

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  104 bits (261), Expect = 6e-25
 Identities = 50/294 (17%), Positives = 96/294 (32%), Gaps = 31/294 (10%)

Query: 1   GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNV 60
                +  +L +    L+        +   L+SL L  NK      +       L  +++
Sbjct: 303 VPKHFKWQSLSIIRCQLK---QFPTLDLPFLKSLTLTMNKGSISFKKVALP--SLSYLDL 357

Query: 61  ENNMISDSFPC--WMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGF 118
             N +S S  C       + L+ L L  N               + L+ +D  H+     
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS---ANFMGLEELQHLDFQHSTLKRV 414

Query: 119 LPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNR 178
                F S+E +  +D    + Y        +  +   G    L ++      +  + N 
Sbjct: 415 TEFSAFLSLEKLLYLD----ISYT-------NTKIDFDGIFLGLTSL----NTLKMAGNS 459

Query: 179 FHGEI-SEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS 237
           F     S V  N  +L  L+LS   L       F+ +  L+ L++S N L          
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519

Query: 238 VTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPK 291
           + +L+ L+ S+NR+       ++         +    L    +   C +    +
Sbjct: 520 LYSLSTLDCSFNRI-----ETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQ 568

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 97.8 bits (244), Expect = 1e-22
 Identities = 41/253 (16%), Positives = 86/253 (33%), Gaps = 26/253 (10%)

Query: 1   GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNV 60
           G     +    L   +        F   +++ ++ L    ++      + K+ K + +++
Sbjct: 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDVPKHFKWQSLSI 314

Query: 61  ENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLP 120
               +   FP     L  LK L L  N+               +L  +DLS    + F  
Sbjct: 315 IRCQLK-QFPT--LDLPFLKSLTLTMNKGSISFKKVA----LPSLSYLDLSRNALS-FSG 366

Query: 121 RRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFH 180
              +  +           L ++  +F    I  A      +LQ++       DF  +   
Sbjct: 367 CCSYSDLGTNS-------LRHLDLSFNGAIIMSANFMGLEELQHL-------DFQHSTLK 412

Query: 181 GEIS-EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS-V 238
                    + + L  L++S+ +   +    F  +T+L +L ++ N         + +  
Sbjct: 413 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT 472

Query: 239 TALALLNLSYNRL 251
           T L  L+LS  +L
Sbjct: 473 TNLTFLDLSKCQL 485

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 87.4 bits (217), Expect = 4e-19
 Identities = 40/262 (15%), Positives = 77/262 (29%), Gaps = 25/262 (9%)

Query: 1   GSFS--TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVV 58
            SFS  +EL  L L    +E      +    HL +L L  N ++   P S +    LE +
Sbjct: 50  YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109

Query: 59  NVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGF 118
                 ++      +G L  LK L +  N        +  +     L  +DLS+      
Sbjct: 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS-NLTNLVHVDLSYNYIQT- 167

Query: 119 LPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNR 178
           +       +     V+    +      F  +           +L  +           N 
Sbjct: 168 ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA-----FQGIKLHEL-------TLRGNF 215

Query: 179 FHGEI-SEVLGNFKSLKVLNLSHNSLTGNIPVS------FENMTAL--ESLDLSFNKLDG 229
               I    L N   L V  L          +        E +  +  +   L++     
Sbjct: 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS 275

Query: 230 RIPEQLLSVTALALLNLSYNRL 251
               +   +  ++ ++L+   +
Sbjct: 276 DDIVKFHCLANVSAMSLAGVSI 297

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 84.3 bits (209), Expect = 4e-18
 Identities = 42/268 (15%), Positives = 82/268 (30%), Gaps = 20/268 (7%)

Query: 4   STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
            +    + L  N L+     +F+N S L+ LDL   ++E    ++      L  + +  N
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 64  MISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITF-PFQALRIIDLSHTEFTGFLPRR 122
            I    P     L+ L+ LV    +        +        L+ ++++H          
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLE---SFPIGQLITLKKLNVAHNFIHSCKLPA 147

Query: 123 IFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGE 182
            F ++  + +VD                I          L+    +  ++D S N     
Sbjct: 148 YFSNLTNLVHVD-----------LSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFI 196

Query: 183 ISEVLGNFKSLKVLNLSHNSLTGNIP-VSFENMTALESLDLSFNKLDGRIPEQLLSVTA- 240
             +       L  L L  N  + NI     +N+  L    L   +       ++   +  
Sbjct: 197 QDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255

Query: 241 --LALLNLSYNRLWGRIPRGNQFNTFQN 266
             L  + +   RL       +    F  
Sbjct: 256 EGLCDVTIDEFRLTYTNDFSDDIVKFHC 283

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 69.3 bits (170), Expect = 4e-13
 Identities = 20/91 (21%), Positives = 35/91 (38%)

Query: 163 QNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDL 222
            +I    + +D S N      S    NF  L+ L+LS   +      ++  +  L +L L
Sbjct: 28  DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL 87

Query: 223 SFNKLDGRIPEQLLSVTALALLNLSYNRLWG 253
           + N +    P     +T+L  L     +L  
Sbjct: 88  TGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 21/81 (25%)

Query: 194 KVLNLSHNSLT---GNIPV------------------SFENMTALESLDLSFNKLDGRIP 232
                    L+    +IP                   SF N + L+ LDLS  +++    
Sbjct: 14  ITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED 73

Query: 233 EQLLSVTALALLNLSYNRLWG 253
           +    +  L+ L L+ N +  
Sbjct: 74  KAWHGLHHLSNLILTGNPIQS 94

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.0 bits (242), Expect = 3e-23
 Identities = 51/301 (16%), Positives = 109/301 (36%), Gaps = 44/301 (14%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
                  + ++SL+  + +   +A +++ LDL  N L       LA + KLE++N+ +N+
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           + ++    + SLS L+ L L +N          +     ++  +  ++   +  +     
Sbjct: 70  LYETLD--LESLSTLRTLDLNNNYV------QEL-LVGPSIETLHAANNNIS-RVSCSRG 119

Query: 125 PSMEA---MKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHG 181
              +      N                  IT+     +     +    + +D   N    
Sbjct: 120 QGKKNIYLANN-----------------KITMLRDLDEGCRSRV----QYLDLKLNEIDT 158

Query: 182 -EISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA 240
              +E+  +  +L+ LNL +N +  ++         L++LDLS NKL   +  +  S   
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAG 215

Query: 241 LALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPKAPRLASFDH 300
           +  ++L  N+L   I         +    + +  L G         D   K  R+ +   
Sbjct: 216 VTWISLRNNKL-VLIE-----KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

Query: 301 D 301
            
Sbjct: 270 Q 270

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 85.4 bits (212), Expect = 4e-19
 Identities = 41/263 (15%), Positives = 85/263 (32%), Gaps = 40/263 (15%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
             +  L L  N L        A  + L  L+L SN L   L   L     L  +++ NN 
Sbjct: 34  WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           + +     +     ++ L   +N      C+       Q  + I L++ + T  L     
Sbjct: 92  VQE-----LLVGPSIETLHAANNNISRVSCSR-----GQGKKNIYLANNKITM-LRDLDE 140

Query: 125 PSMEAMKNVDEQG-RLEYMGRAFCDESITVAMKGHDFQLQNIFVMF-------------- 169
                ++ +D +   ++ +  A    S           L+++ + +              
Sbjct: 141 GCRSRVQYLDLKLNEIDTVNFAELAASSD--------TLEHLNLQYNFIYDVKGQVVFAK 192

Query: 170 -RAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 228
            + +D SSN+    +     +   +  ++L +N L   I  +      LE  DL  N   
Sbjct: 193 LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

Query: 229 GRIPEQLLSVTALALLNLSYNRL 251
                +        +  ++   +
Sbjct: 251 -CGTLRDFFSKNQRVQTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 79.6 bits (197), Expect = 4e-17
 Identities = 33/233 (14%), Positives = 80/233 (34%), Gaps = 33/233 (14%)

Query: 21  IHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELK 80
           IH    N +  +   +  + L+  L         ++ +++  N +S      +   ++L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 81  ILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQG-RL 139
           +L L SN         +++     LR +DL++                +++ +      +
Sbjct: 62  LLNLSSNVLYETLDLESLS----TLRTLDLNNNYVQE------LLVGPSIETLHAANNNI 111

Query: 140 EYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLS 199
                      ++           +     + +  ++N+         G    ++ L+L 
Sbjct: 112 ---------SRVSC----------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152

Query: 200 HNSLTG-NIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 251
            N +   N      +   LE L+L +N +   +    +    L  L+LS N+L
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNKL 203

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 18/131 (13%)

Query: 1   GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNV 60
                +L TL L +N L   +   F +A+ +  + L +NKL   + ++L     LE  ++
Sbjct: 187 QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDL 244

Query: 61  ENNMIS-DSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQA--------------- 104
             N     +   +      ++ +  ++ +          T P                  
Sbjct: 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA 304

Query: 105 LRIIDLSHTEF 115
            R+I L H   
Sbjct: 305 DRLIALGHHHH 315

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 99.1 bits (247), Expect = 4e-23
 Identities = 49/278 (17%), Positives = 85/278 (30%), Gaps = 31/278 (11%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPL--PRSLAKYIKLEVVNVEN 62
             L  L L ++ +     + F    HL  L LY   L   +           L  +++  
Sbjct: 73  PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132

Query: 63  NMISDSFPCWM-GSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPR 121
           N I   +     G L+ LK +   SNQ      +       + L    L+       +  
Sbjct: 133 NQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV 192

Query: 122 RIFPSMEAMKNVDEQG------RLEYMGRAFCDESITVAMKGHDFQLQNIFVMF------ 169
                M   +N+  +                   +I+ +         +I          
Sbjct: 193 DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252

Query: 170 ----------------RAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFEN 213
                           R +D S        S V    K LKVLNL++N +      +F  
Sbjct: 253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG 312

Query: 214 MTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 251
           +  L+ L+LS+N L          +  +A ++L  N +
Sbjct: 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 93.3 bits (232), Expect = 4e-21
 Identities = 64/332 (19%), Positives = 106/332 (31%), Gaps = 55/332 (16%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
            +L  L+L  N +       F    +L+ L+L  N L      +     K+  ++++ N 
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPP-----------CNSNITFPFQALR--IIDLS 111
           I+         L +L+ L LR N                  N  +T P   L   +I LS
Sbjct: 350 IAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLS 409

Query: 112 HTEFTGFLPRRIFPSMEAMKNVDEQG-RLEYM-GRAFCDESITVAMKGHDFQLQNIFVMF 169
                          +  ++ +     R     G                 +  ++    
Sbjct: 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS------------ENPSL---- 453

Query: 170 RAMDFSSNRFHGEI-----SEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSF 224
             +    N            +V      L+VL L+HN L    P  F ++TAL  L L+ 
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513

Query: 225 NKLDGRIPEQLLSVTALALLNLSYNRLWGRIP-----------RGNQF------NTFQND 267
           N+L   +    L    L +L++S N+L    P             N+F      +TF N 
Sbjct: 514 NRL-TVLSHNDLP-ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINW 571

Query: 268 SYIGNIRLCGEPLTVRCSNDGLPKAPRLASFD 299
               N+ + G P  + C          L S  
Sbjct: 572 LNHTNVTIAGPPADIYCVYPDSFSGVSLFSLS 603

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 76.0 bits (187), Expect = 2e-15
 Identities = 43/268 (16%), Positives = 86/268 (32%), Gaps = 34/268 (12%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPL-PRSLAKYIKLEVVNVENN 63
                L L  N +     ++F     L+ L+L S      +   +      L ++++ ++
Sbjct: 24  NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83

Query: 64  MISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRI 123
            I    P     L  L  L L                  +AL  +DLS  +         
Sbjct: 84  KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS 143

Query: 124 FPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEI 183
           F  + ++K++D           F    I +  +     LQ           ++N  +  +
Sbjct: 144 FGKLNSLKSID-----------FSSNQIFLVCEHELEPLQGKT--LSFFSLAANSLYSRV 190

Query: 184 SEVLGN------FKSLKVLNLSHNSLTGNIPVSFEN------------MTALESLDLSFN 225
           S   G          L++L++S N  T +I  +F N               +      F+
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250

Query: 226 KLDGRIPEQL--LSVTALALLNLSYNRL 251
            +          L+ +++  L+LS+  +
Sbjct: 251 NIKDPDQNTFAGLARSSVRHLDLSHGFV 278

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 39/254 (15%), Positives = 70/254 (27%), Gaps = 55/254 (21%)

Query: 25  FANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSF-PCWMGSLSELKILV 83
               +    L L  N +      S     +L+++ + +     +       +L  L+IL 
Sbjct: 20  PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79

Query: 84  LRSNQFDCPPCNSNITF-PFQALRIIDLSHTEFTGF-LPRRIFPSMEAMKNVDEQGRLEY 141
           L S++      +    F     L  + L     +   L    F +++A+  +        
Sbjct: 80  LGSSKIYFLHPD---AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL-------- 128

Query: 142 MGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHG-EISEVLGNFKSLKVLNLSH 200
                                          D S N+     +    G   SLK ++ S 
Sbjct: 129 -------------------------------DLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157

Query: 201 NSLTGNIPVSFEN--MTALESLDLSFNKLDGRIPEQLLSV------TALALLNLSYNRLW 252
           N +        E      L    L+ N L  R+               L +L++S N   
Sbjct: 158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW- 216

Query: 253 GRIPRGNQFNTFQN 266
                GN  N    
Sbjct: 217 TVDITGNFSNAISK 230

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 5/81 (6%)

Query: 173 DFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRI- 231
            +        +++V     + + L LS N +      SF  +  L+ L+L        I 
Sbjct: 10  FYRFCN----LTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID 65

Query: 232 PEQLLSVTALALLNLSYNRLW 252
            E   ++  L +L+L  ++++
Sbjct: 66  KEAFRNLPNLRILDLGSSKIY 86

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 95.7 bits (238), Expect = 3e-22
 Identities = 51/301 (16%), Positives = 109/301 (36%), Gaps = 44/301 (14%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
                  + ++SL+  + +   +A +++ LDL  N L       LA + KLE++N+ +N+
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           + ++    + SLS L+ L L +N          +     ++  +  ++   +  +     
Sbjct: 70  LYETLD--LESLSTLRTLDLNNNYV------QEL-LVGPSIETLHAANNNIS-RVSCSRG 119

Query: 125 PSMEA---MKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHG 181
              +      N                  IT+     +     +    + +D   N    
Sbjct: 120 QGKKNIYLANN-----------------KITMLRDLDEGCRSRV----QYLDLKLNEIDT 158

Query: 182 -EISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA 240
              +E+  +  +L+ LNL +N +  ++         L++LDLS NKL   +  +  S   
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAG 215

Query: 241 LALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPKAPRLASFDH 300
           +  ++L  N+L   I         +    + +  L G         D   K  R+ +   
Sbjct: 216 VTWISLRNNKL-VLIE-----KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

Query: 301 D 301
            
Sbjct: 270 Q 270

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 79.9 bits (197), Expect = 1e-16
 Identities = 33/233 (14%), Positives = 79/233 (33%), Gaps = 33/233 (14%)

Query: 21  IHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELK 80
           IH    N +  +   +  + L+  L         ++ +++  N +S      +   ++L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 81  ILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQG-RL 139
           +L L SN         +++     LR +DL++                +++ +      +
Sbjct: 62  LLNLSSNVLYETLDLESLS----TLRTLDLNNNYVQE------LLVGPSIETLHAANNNI 111

Query: 140 EYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLS 199
             +                     +     + +  ++N+         G    ++ L+L 
Sbjct: 112 SRVSC-------------------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152

Query: 200 HNSLTG-NIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 251
            N +   N      +   LE L+L +N +   +    +    L  L+LS N+L
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNKL 203

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 77.6 bits (191), Expect = 5e-16
 Identities = 33/277 (11%), Positives = 84/277 (30%), Gaps = 21/277 (7%)

Query: 5   TELITLHLENNSLEG-HIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
           + +  L L+ N ++  +     A++  L  L+L  N +   +      + KL+ +++ +N
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VK-GQVVFAKLKTLDLSSN 201

Query: 64  MISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRI 123
            ++        S + +  + LR+N+              Q L   DL    F     R  
Sbjct: 202 KLA-FMGPEFQSAAGVTWISLRNNKLVLIE---KALRFSQNLEHFDLRGNGFHCGTLRDF 257

Query: 124 FPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI----FVMFRAMDFSSNRF 179
           F   + ++ V +Q   +  G+   + ++        +  +++         A+    +  
Sbjct: 258 FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHAL 317

Query: 180 H-------GEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 232
                     +     N    + ++         I        A  +L+     LD ++ 
Sbjct: 318 LSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVS 377

Query: 233 ---EQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQN 266
                   +       +    L       +     + 
Sbjct: 378 NGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRA 414

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 63.7 bits (155), Expect = 2e-11
 Identities = 32/249 (12%), Positives = 73/249 (29%), Gaps = 53/249 (21%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
             + TLH  NN++     +        +++ L +NK+            +++ ++++ N 
Sbjct: 99  PSIETLHAANNNISRVSCSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155

Query: 65  ISD-SFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRI 123
           I   +F     S   L+ L L+ N                 L+ +DLS  +        +
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA----KLKTLDLSSNKLA-----FM 206

Query: 124 FPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEI 183
            P  ++                                +  I          +N+    I
Sbjct: 207 GPEFQSAAG-----------------------------VTWI-------SLRNNKLV-LI 229

Query: 184 SEVLGNFKSLKVLNLSHNSL-TGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALA 242
            + L   ++L+  +L  N    G +   F     ++++      +     +     T   
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK--QTVKKLTGQNEEECTVPT 287

Query: 243 LLNLSYNRL 251
           L +      
Sbjct: 288 LGHYGAYCC 296

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 90.5 bits (225), Expect = 2e-20
 Identities = 54/308 (17%), Positives = 104/308 (33%), Gaps = 33/308 (10%)

Query: 1   GSFS--TELITLHLENNSLEGHIH-NTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEV 57
           G+F+    L TL L +N L+  I    F   S+L  LD+  NK+   L         L+ 
Sbjct: 74  GAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132

Query: 58  VNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTG 117
           + V +N +          L+ L+ L L        P  +        L ++ L H     
Sbjct: 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH--GLIVLRLRHLNIN- 189

Query: 118 FLPRRIFPSMEAMKNVDEQG--RLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFS 175
            +    F  +  +K ++      L+ M               +   L ++         +
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL----------YGLNLTSL-------SIT 232

Query: 176 SNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQL 235
                      + +   L+ LNLS+N ++         +  L+ + L   +L   +    
Sbjct: 233 HCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYA 291

Query: 236 LS-VTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPKAPR 294
              +  L +LN+S N+L   +        F +   +  + L   PL   C    + +   
Sbjct: 292 FRGLNYLRVLNVSGNQL-TTLEES----VFHSVGNLETLILDSNPLACDCRLLWVFRRRW 346

Query: 295 LASFDHDE 302
             +F+  +
Sbjct: 347 RLNFNRQQ 354

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 81.7 bits (202), Expect = 2e-17
 Identities = 42/261 (16%), Positives = 82/261 (31%), Gaps = 53/261 (20%)

Query: 3   FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVEN 62
             TE   L L  N ++    + FA+  HL  L+L  N +    P +      L  + + +
Sbjct: 30  IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89

Query: 63  NMIS----DSFPCWMGSLSELKILVLRSNQFDCPPCNSNITF-PFQALRIIDLSHTEFTG 117
           N +       F      LS L  L +  N+        +  F     L+ +++   +   
Sbjct: 90  NRLKLIPLGVFT----GLSNLTKLDISENKIVILL---DYMFQDLYNLKSLEVGDNDLV- 141

Query: 118 FLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSN 177
           ++  R F  + ++                                         +     
Sbjct: 142 YISHRAFSGLNSL---------------------------------------EQLTLEKC 162

Query: 178 RFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS 237
                 +E L +   L VL L H ++      SF+ +  L+ L++S       +    L 
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222

Query: 238 VTALALLNLSYNRLWGRIPRG 258
              L  L++++  L   +P  
Sbjct: 223 GLNLTSLSITHCNL-TAVPYL 242

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 90.0 bits (223), Expect = 4e-20
 Identities = 49/300 (16%), Positives = 88/300 (29%), Gaps = 47/300 (15%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
             L  L LE N L       F N   L +L + +N LE     +      L+ + + +N 
Sbjct: 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           ++      +  +  L    +  N                 +  +D SH      +   + 
Sbjct: 183 LT-HVD--LSLIPSLFHANVSYNLLSTLAIPIA-------VEELDASHNSIN-VVRGPVN 231

Query: 125 PSMEAMK---NVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHG 181
             +  +K   N      L        +                +      +D S N    
Sbjct: 232 VELTILKLQHN-----NLTDTA-WLLN-------------YPGL----VEVDLSYNELEK 268

Query: 182 EISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTAL 241
            +       + L+ L +S+N L   + +  + +  L+ LDLS N L   +         L
Sbjct: 269 IMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 326

Query: 242 ALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPKAPRLASFDHD 301
             L L +N +   +      +T      + N+ L                  R A  D D
Sbjct: 327 ENLYLDHNSI-VTLK----LSTHHT---LKNLTLSHNDWDCNSLRALFRNVARPAVDDAD 378

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 85.4 bits (211), Expect = 1e-18
 Identities = 45/251 (17%), Positives = 89/251 (35%), Gaps = 40/251 (15%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
             +  L++  N++     + F N   L  L L  N L            KL  +++ NN 
Sbjct: 99  HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 158

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITF-PFQALRIIDLSHTEFTGFLPRRI 123
           +         + + L+ L L SN+       +++      +L   ++S+   +       
Sbjct: 159 LERIEDDTFQATTSLQNLQLSSNRL------THVDLSLIPSLFHANVSYNLLS------T 206

Query: 124 FPSMEAMKNVDEQG-RLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGE 182
                A++ +D     +  +                      + V    +    N     
Sbjct: 207 LAIPIAVEELDASHNSINVVRG-------------------PVNVELTILKLQHNN---- 243

Query: 183 ISEV--LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA 240
           +++   L N+  L  ++LS+N L   +   F  M  LE L +S N+L   +      +  
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPT 302

Query: 241 LALLNLSYNRL 251
           L +L+LS+N L
Sbjct: 303 LKVLDLSHNHL 313

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 75.3 bits (185), Expect = 3e-15
 Identities = 44/252 (17%), Positives = 95/252 (37%), Gaps = 33/252 (13%)

Query: 2   SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVE 61
            +      +H++  + + +        ++ + +   ++ +       L  + ++E++N+ 
Sbjct: 24  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 83

Query: 62  NNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPR 121
           +  I +           ++ L +  N     P   ++      L ++ L   + +  LPR
Sbjct: 84  DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP--PHVFQNVPLLTVLVLERNDLS-SLPR 140

Query: 122 RIFPSMEAMKNVDEQG-RLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFH 180
            IF +   +  +      LE +     ++    A       LQN+         SSNR  
Sbjct: 141 GIFHNTPKLTTLSMSNNNLERI-----EDDTFQATT----SLQNL-------QLSSNR-- 182

Query: 181 GEISEV-LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT 239
             ++ V L    SL   N+S+N L+     +     A+E LD S N ++  +   +    
Sbjct: 183 --LTHVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNV-- 232

Query: 240 ALALLNLSYNRL 251
            L +L L +N L
Sbjct: 233 ELTILKLQHNNL 244

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.9 bits (137), Expect = 3e-09
 Identities = 34/209 (16%), Positives = 79/209 (37%), Gaps = 25/209 (11%)

Query: 45  LPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQA 104
           +  +L        V+++       F     +L+  KI+  +++     P  + +   F+ 
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP--AALLDSFRQ 76

Query: 105 LRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQG-RLEYM-GRAFCDESITVAMKGHDFQL 162
           + +++L+  +    +    F     ++ +      + Y+    F +             +
Sbjct: 77  VELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN-------------V 122

Query: 163 QNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDL 222
             +      +    N        +  N   L  L++S+N+L      +F+  T+L++L L
Sbjct: 123 PLL----TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178

Query: 223 SFNKLDGRIPEQLLSVTALALLNLSYNRL 251
           S N+L   +   L+   +L   N+SYN L
Sbjct: 179 SSNRLT-HVDLSLI--PSLFHANVSYNLL 204

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 55.3 bits (133), Expect = 1e-08
 Identities = 37/250 (14%), Positives = 77/250 (30%), Gaps = 19/250 (7%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
             L  L++ NN L   ++        L+ LDL  N L   + R+  ++ +LE + +++N 
Sbjct: 278 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNS 335

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           I  +    + +   LK L L  N +DC      +        + D        +      
Sbjct: 336 IV-TLK--LSTHHTLKNLTLSHNDWDC-NSLRALFRNVARPAVDDADQHCKIDYQLEHGL 391

Query: 125 PSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEIS 184
              E+ K   ++  L+Y+      E +         + Q        ++   +  H    
Sbjct: 392 CCKESDKPYLDR-LLQYIALTSVVEKVQ--------RAQGRCSATDTINSVQSLSHYITQ 442

Query: 185 EVLGNFKSLKVLNLSHNSLTGNIPV----SFENMTALESLDLSFNKLDGRIPEQLLSVTA 240
           +     +  + L    N L   +        +    L+ L    +    R       +  
Sbjct: 443 QGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLAR 502

Query: 241 LALLNLSYNR 250
            +        
Sbjct: 503 SSDNLNKVFT 512

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 86.6 bits (215), Expect = 3e-19
 Identities = 54/315 (17%), Positives = 102/315 (32%), Gaps = 53/315 (16%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
             +  L++  N++     + F N   L  L L  N L            KL  +++ NN 
Sbjct: 93  HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 152

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITF-PFQALRIIDLSHTEFTGFLPRRI 123
           +         + + L+ L L SN+       +++      +L   ++S+   +       
Sbjct: 153 LERIEDDTFQATTSLQNLQLSSNRL------THVDLSLIPSLFHANVSYNLLS------T 200

Query: 124 FPSMEAMKNVDEQG-RLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGE 182
                A++ +D     +  +                      + V    +    N    +
Sbjct: 201 LAIPIAVEELDASHNSINVVRG-------------------PVNVELTILKLQHNNLT-D 240

Query: 183 ISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALA 242
            +  L N+  L  ++LS+N L   +   F  M  LE L +S N+L   +      +  L 
Sbjct: 241 TA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK 298

Query: 243 LLNLSYNRLWGRIPR--------------GNQFNTFQNDSYIG--NIRLCGEPLTVRCSN 286
           +L+LS+N L   + R               N   T +  ++    N+ L           
Sbjct: 299 VLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLR 357

Query: 287 DGLPKAPRLASFDHD 301
                  R A  D D
Sbjct: 358 ALFRNVARPAVDDAD 372

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 42/248 (16%), Positives = 82/248 (33%), Gaps = 55/248 (22%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
                +  +N+++         +   +  L+L   ++E     + A    ++ + +  N 
Sbjct: 45  NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA 104

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           I    P    ++  L +LVL  N     P    I      L  + +S+      +    F
Sbjct: 105 IRYLPPHVFQNVPLLTVLVLERNDLSSLP--RGIFHNTPKLTTLSMSNNNLE-RIEDDTF 161

Query: 125 PSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEIS 184
            +  +++N+                                         SSNR    ++
Sbjct: 162 QATTSLQNLQ---------------------------------------LSSNR----LT 178

Query: 185 EV-LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALAL 243
            V L    SL   N+S+N L+     +     A+E LD S N ++  +   +     L +
Sbjct: 179 HVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNV--ELTI 230

Query: 244 LNLSYNRL 251
           L L +N L
Sbjct: 231 LKLQHNNL 238

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.5 bits (142), Expect = 7e-10
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 3/87 (3%)

Query: 173 DFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 232
            F ++      + +L +F+ +++LNL+   +      +F     ++ L + FN +   +P
Sbjct: 51  TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLP 109

Query: 233 EQLLS-VTALALLNLSYNRLWGRIPRG 258
             +   V  L +L L  N L   +PRG
Sbjct: 110 PHVFQNVPLLTVLVLERNDL-SSLPRG 135

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 35/210 (16%), Positives = 79/210 (37%), Gaps = 27/210 (12%)

Query: 45  LPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQA 104
           +  +L        V+++       F     +L+  KI+  +++     P  + +   F+ 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP--AALLDSFRQ 70

Query: 105 LRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQG-RLEYM-GRAFCDESITVAMKGHDFQL 162
           + +++L+  +    +    F     ++ +      + Y+    F +             +
Sbjct: 71  VELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN-------------V 116

Query: 163 QNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVS-FENMTALESLD 221
             +      +    N        +  N   L  L++S+N+L   I    F+  T+L++L 
Sbjct: 117 PLL----TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQ 171

Query: 222 LSFNKLDGRIPEQLLSVTALALLNLSYNRL 251
           LS N+L   +   L+   +L   N+SYN L
Sbjct: 172 LSSNRLT-HVDLSLI--PSLFHANVSYNLL 198

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 87.5 bits (217), Expect = 3e-19
 Identities = 54/279 (19%), Positives = 105/279 (37%), Gaps = 22/279 (7%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLR----SLDLYSNKLEGPLPRSLAKYIKLEVVNV 60
           T L  L L +N ++            +     SLDL  N +   +     K I+L  + +
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTL 207

Query: 61  ENNMISDS-FPCWMGSLSELKILVLRSNQF-DCPPCNSNITFPFQALR-----IIDLSHT 113
            NN  S +     +  L+ L++  L   +F +            + L         L++ 
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 114 EFTGFLPRRIFPSMEAMKNVDEQG----RLEYMGRAFCDESITVAMKGHDFQLQNIFVMF 169
           ++       +F  +  + +         R++     F  + + +                
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 327

Query: 170 RAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLT--GNIPVSFENMTALESLDLSFNKL 227
           + + F+SN+     SEV  +  SL+ L+LS N L+  G    S    T+L+ LDLSFN +
Sbjct: 328 KRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 228 DGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQN 266
              +    L +  L  L+  ++ L  ++   + F + +N
Sbjct: 386 I-TMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRN 422

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 87.1 bits (216), Expect = 4e-19
 Identities = 50/254 (19%), Positives = 79/254 (31%), Gaps = 50/254 (19%)

Query: 1   GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNV 60
            S++     L L N                L+ L   SNK       S      LE +++
Sbjct: 300 FSYNFGWQHLELVNCKFGQF---PTLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDL 354

Query: 61  ENNMIS--DSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGF 118
             N +S            + LK L L  N       N       + L  +D  H+     
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF---LGLEQLEHLDFQHSNLKQM 411

Query: 119 LPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNR 178
               +F S+                                  L  +       D S   
Sbjct: 412 SEFSVFLSLR--------------------------------NLIYL-------DISHTH 432

Query: 179 FHGEISEVLGNFKSLKVLNLSHNSLTGNI-PVSFENMTALESLDLSFNKLDGRIPEQLLS 237
                + +     SL+VL ++ NS   N  P  F  +  L  LDLS  +L+   P    S
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 238 VTALALLNLSYNRL 251
           +++L +LN++ N+L
Sbjct: 493 LSSLQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 83.6 bits (207), Expect = 5e-18
 Identities = 41/250 (16%), Positives = 82/250 (32%), Gaps = 47/250 (18%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLE--GPLPRSLAKYIKLEVVNVEN 62
             L  L   +N        +  +   L  LDL  N L   G   +S      L+ +++  
Sbjct: 325 KSLKRLTFTSNKG--GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 63  NMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRR 122
           N +  +       L +L+ L  + +         ++    + L  +D+SHT         
Sbjct: 383 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISHTHTR-VAFNG 439

Query: 123 IFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGE 182
           IF  +                                  L+ +         + N F   
Sbjct: 440 IFNGLS--------------------------------SLEVL-------KMAGNSFQEN 460

Query: 183 I-SEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTAL 241
              ++    ++L  L+LS   L    P +F ++++L+ L+++ N+L          +T+L
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520

Query: 242 ALLNLSYNRL 251
             + L  N  
Sbjct: 521 QKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 80.1 bits (198), Expect = 7e-17
 Identities = 39/228 (17%), Positives = 70/228 (30%), Gaps = 47/228 (20%)

Query: 5   TELITLHLENNSLE--GHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVEN 62
             L  L L  N L   G    +    + L+ LDL  N +   +  +     +LE ++ ++
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQH 405

Query: 63  NMISDSFP-CWMGSLSELKILVLRSNQFDCPPCNSNITFP-FQALRIIDLSHTEFTGFLP 120
           + +          SL  L  L +            N  F    +L ++ ++   F     
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF---NGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 121 RRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFH 180
             IF  +                                  L  +       D S  +  
Sbjct: 463 PDIFTELR--------------------------------NLTFL-------DLSQCQLE 483

Query: 181 GEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 228
                   +  SL+VLN++ N L       F+ +T+L+ + L  N  D
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.1 bits (190), Expect = 9e-16
 Identities = 43/254 (16%), Positives = 83/254 (32%), Gaps = 33/254 (12%)

Query: 5   TELITLHLENNSLEG---HIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVE 61
             L         L+     I + F   +++ S  L S  +E       +     + + + 
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELV 312

Query: 62  NNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGF-LP 120
           N      FP     L  LK L   SN+        ++     +L  +DLS    +     
Sbjct: 313 NCKF-GQFPTL--KLKSLKRLTFTSNKGGNAFSEVDLP----SLEFLDLSRNGLSFKGCC 365

Query: 121 RRIFPSMEAMKNVDEQG-RLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRF 179
            +      ++K +D     +  M   F               L+ +      +DF  +  
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVITMSSNF-------------LGLEQL----EHLDFQHSNL 408

Query: 180 HGEISE-VLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS- 237
                  V  + ++L  L++SH          F  +++LE L ++ N         + + 
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 238 VTALALLNLSYNRL 251
           +  L  L+LS  +L
Sbjct: 469 LRNLTFLDLSQCQL 482

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 70.9 bits (174), Expect = 1e-13
 Identities = 39/254 (15%), Positives = 71/254 (27%), Gaps = 49/254 (19%)

Query: 4   STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
                 L L  N L      +F +   L+ LDL   +++     +      L  + +  N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 64  MISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITF-PFQALRIIDLSHTEFTGFLPRR 122
            I          LS L+ LV             N      + L+ ++++H     F    
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLE---NFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 123 IFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGE 182
            F ++                                            +D SSN+    
Sbjct: 144 YFSNLTN---------------------------------------LEHLDLSSNKIQSI 164

Query: 183 ISEVLGNFKSLKV----LNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS- 237
               L     + +    L+LS N +    P +F+ +  L  L L  N     + +  +  
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQG 223

Query: 238 VTALALLNLSYNRL 251
           +  L +  L     
Sbjct: 224 LAGLEVHRLVLGEF 237

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 43/288 (14%), Positives = 84/288 (29%), Gaps = 45/288 (15%)

Query: 1   GSFS--TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVV 58
            SF    EL  L L    ++      + + SHL +L L  N ++     + +    L+ +
Sbjct: 46  YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105

Query: 59  NVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGF 118
                 ++      +G L  LK L +  N           +     L  +DLS  +    
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQS- 163

Query: 119 LPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNR 178
           +                                          L  + ++  ++D S N 
Sbjct: 164 IYCTDLRV-----------------------------------LHQMPLLNLSLDLSLNP 188

Query: 179 FHGEISEVLGNFKSLKVLNLSHNSLTGNIP-VSFENMTALESLDLSFNKLDGRIPEQLLS 237
            +  I         L  L L +N  + N+     + +  LE   L   +       +   
Sbjct: 189 MN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 238 VTA---LALLNLSYNRL-WGRIPRGNQFNTFQNDSYIGNIRLCGEPLT 281
            +A   L  L +   RL +      +  + F   + + +  L    + 
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.3 bits (149), Expect = 1e-10
 Identities = 18/89 (20%), Positives = 37/89 (41%)

Query: 163 QNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDL 222
            N+    + +D S N      S    +F  L+VL+LS   +      ++++++ L +L L
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 223 SFNKLDGRIPEQLLSVTALALLNLSYNRL 251
           + N +          +++L  L      L
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNL 112

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.6 bits (142), Expect = 9e-10
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)

Query: 5   TELITLHLENNSLEGHIH-NTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
           + L  L +  NS + +   + F    +L  LDL   +LE   P +      L+V+N+ +N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504

Query: 64  MISDSFPCWMGSLSELKILVLRSNQFDC 91
            +          L+ L+ + L +N +DC
Sbjct: 505 QLKSVPDGIFDRLTSLQKIWLHTNPWDC 532

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.8 bits (208), Expect = 2e-18
 Identities = 47/261 (18%), Positives = 89/261 (34%), Gaps = 54/261 (20%)

Query: 4   STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
               + L L +  L     +     SHL+ + + +  L   LP ++ ++  LE + +  N
Sbjct: 80  QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARN 137

Query: 64  MISDSFPCWMGSLSELKILVLRS-NQFDCPPCN------SNITFPFQALRIIDLSHTEFT 116
            +  + P  + SL+ L+ L +R+  +    P        S        L+ + L  T   
Sbjct: 138 PLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196

Query: 117 GFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSS 176
             LP                             SI          LQN+    +++   +
Sbjct: 197 -SLP----------------------------ASI--------ANLQNL----KSLKIRN 215

Query: 177 NRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLS-FNKLDGRIPEQL 235
           +     +   + +   L+ L+L   +   N P  F     L+ L L   + L   +P  +
Sbjct: 216 SPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL-LTLPLDI 273

Query: 236 LSVTALALLNLSYNRLWGRIP 256
             +T L  L+L       R+P
Sbjct: 274 HRLTQLEKLDLRGCVNLSRLP 294

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 69.2 bits (170), Expect = 2e-13
 Identities = 35/247 (14%), Positives = 70/247 (28%), Gaps = 56/247 (22%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYS-NKLE--------GPLPRSLAKYIKL 55
             L TL L  N L   +  + A+ + LR L + +  +L                   + L
Sbjct: 127 AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185

Query: 56  EVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDC-PPCNSNITFPFQALRIIDLSHTE 114
           + + +E   I  S P  + +L  LK L +R++      P   ++      L  +DL    
Sbjct: 186 QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLP----KLEELDLRGCT 240

Query: 115 FTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDF 174
                P    P             L+                     L++          
Sbjct: 241 ALRNYP----PIFGGRAP------LKR------------------LILKD---------- 262

Query: 175 SSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQ 234
             +     +   +     L+ L+L        +P     + A   + +  +        +
Sbjct: 263 -CSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

Query: 235 LLSVTAL 241
            ++  A 
Sbjct: 321 PVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 26/245 (10%), Positives = 72/245 (29%), Gaps = 46/245 (18%)

Query: 22  HNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI 81
           H+   ++S   +L    +    P    L+++ +    +      +        + +  +I
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQI 60

Query: 82  LVLRSNQF-DCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE 140
                           + T P      ++L         P + F     + +      L+
Sbjct: 61  ETRTGRALKATADLLEDATQP--GRVALELRSVPLP-QFPDQAF----RLSH------LQ 107

Query: 141 YMGRAFCD-----ESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKV 195
           +M           +++         Q   +      +  + N     +   + +   L+ 
Sbjct: 108 HMTIDAAGLMELPDTMQ--------QFAGL----ETLTLARNPLR-ALPASIASLNRLRE 154

Query: 196 LNLSHNSLTGNIPVSF---------ENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL 246
           L++        +P            + +  L+SL L +  +   +P  + ++  L  L +
Sbjct: 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKI 213

Query: 247 SYNRL 251
             + L
Sbjct: 214 RNSPL 218

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 83.4 bits (207), Expect = 3e-18
 Identities = 43/247 (17%), Positives = 85/247 (34%), Gaps = 57/247 (23%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
            E I   L+  S+   +  T      +  L +   K+       +     LE +N+  N 
Sbjct: 22  AEGIRAVLQKASVTDVV--TQEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQ 77

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           I+D  P  + +L +L  L + +N+        N+T     LR + L+    +        
Sbjct: 78  ITDISP--LSNLVKLTNLYIGTNKITDISALQNLT----NLRELYLNEDNISD------I 125

Query: 125 PSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEIS 184
             +  +        +                                ++  +N    ++S
Sbjct: 126 SPLANLTK------MYS------------------------------LNLGANHNLSDLS 149

Query: 185 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL 244
             L N   L  L ++ + +    P    N+T L SL L++N+++   P  L S+T+L   
Sbjct: 150 P-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYF 204

Query: 245 NLSYNRL 251
               N++
Sbjct: 205 TAYVNQI 211

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 80.7 bits (200), Expect = 2e-17
 Identities = 46/250 (18%), Positives = 97/250 (38%), Gaps = 39/250 (15%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
           T++ +L+L  N     +    +N + L  L +  +K++   P  +A    L  +++  N 
Sbjct: 132 TKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           I D  P  + SL+ L       NQ       +N+T     L  + + + + T   P    
Sbjct: 189 IEDISP--LASLTSLHYFTAYVNQITDITPVANMT----RLNSLKIGNNKITDLSP---L 239

Query: 125 PSMEAMKNVD-EQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEI 183
            ++  +  ++    ++  +       ++          L  +    + ++  SN+    I
Sbjct: 240 ANLSQLTWLEIGTNQISDI------NAVK--------DLTKL----KMLNVGSNQ----I 277

Query: 184 SEV--LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTAL 241
           S++  L N   L  L L++N L          +T L +L LS N +    P  L S++ +
Sbjct: 278 SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM 335

Query: 242 ALLNLSYNRL 251
              + +   +
Sbjct: 336 DSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 78.4 bits (194), Expect = 2e-16
 Identities = 44/253 (17%), Positives = 89/253 (35%), Gaps = 57/253 (22%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
           T L  L+L  +++   I    AN + + SL+L +N         L+    L  + V  + 
Sbjct: 110 TNLRELYLNEDNIS-DISP-LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESK 166

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           + D  P  + +L++L  L L  NQ +     +++T    +L        + T        
Sbjct: 167 VKDVTP--IANLTDLYSLSLNYNQIEDISPLASLT----SLHYFTAYVNQITDI------ 214

Query: 125 PSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEIS 184
             +  M                               L ++          +N+      
Sbjct: 215 TPVANMTR-----------------------------LNSL-------KIGNNKITD--L 236

Query: 185 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL 244
             L N   L  L +  N ++ +I  + +++T L+ L++  N++       L +++ L  L
Sbjct: 237 SPLANLSQLTWLEIGTNQIS-DIN-AVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSL 292

Query: 245 NLSYNRLWGRIPR 257
            L+ N+L      
Sbjct: 293 FLNNNQLGNEDME 305

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 74.9 bits (185), Expect = 2e-15
 Identities = 39/247 (15%), Positives = 85/247 (34%), Gaps = 57/247 (23%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
            +L  L++  N +     +   N ++LR L L  + +    P  LA   K+  +N+  N 
Sbjct: 88  VKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANH 143

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
              S    + +++ L  L +  ++       +N+T     L  + L++ +          
Sbjct: 144 NL-SDLSPLSNMTGLNYLTVTESKVKDVTPIANLT----DLYSLSLNYNQIED------I 192

Query: 125 PSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEIS 184
             + ++ +      L Y                                   N+      
Sbjct: 193 SPLASLTS------LHY------------------------------FTAYVNQITDITP 216

Query: 185 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL 244
             + N   L  L + +N +T   P    N++ L  L++  N++       +  +T L +L
Sbjct: 217 --VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKML 270

Query: 245 NLSYNRL 251
           N+  N++
Sbjct: 271 NVGSNQI 277

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 73.3 bits (181), Expect = 8e-15
 Identities = 38/247 (15%), Positives = 82/247 (33%), Gaps = 57/247 (23%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
             +  L +    +   I       ++L  L+L  N++    P  L+  +KL  + +  N 
Sbjct: 44  ESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNK 99

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           I+D     + +L+ L+ L L  +        +N+T     +  ++L        L     
Sbjct: 100 ITD--ISALQNLTNLRELYLNEDNISDISPLANLT----KMYSLNLGANHNLSDL----- 148

Query: 125 PSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEIS 184
             +  M        L Y                              +  + ++      
Sbjct: 149 SPLSNMTG------LNY------------------------------LTVTESKVKD--V 170

Query: 185 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL 244
             + N   L  L+L++N +    P    ++T+L       N++    P  + ++T L  L
Sbjct: 171 TPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSL 226

Query: 245 NLSYNRL 251
            +  N++
Sbjct: 227 KIGNNKI 233

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.0 bits (149), Expect = 1e-10
 Identities = 30/221 (13%), Positives = 68/221 (30%), Gaps = 55/221 (24%)

Query: 31  LRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFD 90
             +L      +    P   A   +     ++   ++D        L  +  LV+   +  
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 91  CPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDES 150
                  +T     L  ++L+  + T          +  + N                  
Sbjct: 58  SIQGIEYLT----NLEYLNLNGNQIT---------DISPLSN------------------ 86

Query: 151 ITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVS 210
                      L  +      +   +N+        L N  +L+ L L+ ++++   P  
Sbjct: 87  -----------LVKL----TNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP-- 127

Query: 211 FENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 251
             N+T + SL+L  N         L ++T L  L ++ +++
Sbjct: 128 LANLTKMYSLNLGANHN-LSDLSPLSNMTGLNYLTVTESKV 167

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
           ++L +L L NN L           ++L +L L  N +    P  LA   K++  +  N +
Sbjct: 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344

Query: 65  IS 66
           I 
Sbjct: 345 IK 346

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 82.0 bits (203), Expect = 7e-18
 Identities = 45/278 (16%), Positives = 95/278 (34%), Gaps = 43/278 (15%)

Query: 1   GSFS--TELITLHLENNSLEGHIH-NTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEV 57
             F     L  L L NN +   IH   F+    L+ L +  N L   +P +L     L  
Sbjct: 72  DDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVE-IPPNLPS--SLVE 127

Query: 58  VNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTG 117
           + + +N I          L  +  + +  N  +         F    L  + +S  + TG
Sbjct: 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG-AFDGLKLNYLRISEAKLTG 186

Query: 118 FLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQ-LQNIFVMFRAMDFSS 176
            +P+ +  ++  +        L++         I  A++  D      +      +    
Sbjct: 187 -IPKDLPETLNEL-------HLDHN-------KIQ-AIELEDLLRYSKL----YRLGLGH 226

Query: 177 NRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQ-- 234
           N+     +  L    +L+ L+L +N L+  +P    ++  L+ + L  N +  ++     
Sbjct: 227 NQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDF 284

Query: 235 -----LLSVTALALLNLSYNRL-WGRIPRGNQFNTFQN 266
                 +       ++L  N + +  +       TF+ 
Sbjct: 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPA----TFRC 318

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.1 bits (198), Expect = 3e-17
 Identities = 52/285 (18%), Positives = 93/285 (32%), Gaps = 31/285 (10%)

Query: 3   FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVEN 62
            S +   L L+NN +     + F    HL +L L +NK+     ++ +   KL+ + +  
Sbjct: 52  ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111

Query: 63  NMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFT-GFLPR 121
           N +    P      S L  L +  N+    P    +    + +  I++            
Sbjct: 112 NHLV-EIP--PNLPSSLVELRIHDNRIRKVP--KGVFSGLRNMNCIEMGGNPLENSGFEP 166

Query: 122 RIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHG 181
             F  +          +L Y+  +     +T   K        +      +    N+   
Sbjct: 167 GAFDGL----------KLNYLRISEA--KLTGIPKD-------LPETLNELHLDHNKIQ- 206

Query: 182 EISE-VLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA 240
            I    L  +  L  L L HN +      S   +  L  L L  NKL  R+P  L  +  
Sbjct: 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKL 265

Query: 241 LALLNLSYNRLWGRIPRG--NQFNTFQNDSYIGNIRLCGEPLTVR 283
           L ++ L  N +  ++              +Y   I L   P+   
Sbjct: 266 LQVVYLHTNNI-TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 26/235 (11%), Positives = 67/235 (28%), Gaps = 43/235 (18%)

Query: 7   LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKL-EGPLPRSLAKYIKLEVVNVENNMI 65
           L+ L + +N +       F+   ++  +++  N L            +KL  + +    +
Sbjct: 125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL 184

Query: 66  SDSFPCWMGSLSELKILVLRSNQFDCPPCNSNI---TF-PFQALRIIDLSHTEFTGFLPR 121
           +   P        L  L L  N+         I       +  L  + L H +    +  
Sbjct: 185 T-GIP--KDLPETLNELHLDHNKI------QAIELEDLLRYSKLYRLGLGHNQIR-MIEN 234

Query: 122 RIFPSMEAMKNVDEQG-RLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFH 180
                +  ++ +     +L  +                   L+ +    + +   +N   
Sbjct: 235 GSLSFLPTLRELHLDNNKLSRVPAGL-------------PDLKLL----QVVYLHTNNIT 277

Query: 181 GEISE-------VLGNFKSLKVLNLSHNSLTGNI--PVSFENMTALESLDLSFNK 226
            ++                   ++L +N +      P +F  +T   ++     K
Sbjct: 278 -KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 11/121 (9%)

Query: 1   GSFS--TELITLHLENNSLEGHIH-NTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEV 57
                 ++L  L L +N +   I   + +    LR L L +NKL   +P  L     L+V
Sbjct: 211 EDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQV 268

Query: 58  VNVENNMIS----DSFP--CWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLS 111
           V +  N I+    + F    +    +    + L +N                    I   
Sbjct: 269 VYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328

Query: 112 H 112
           +
Sbjct: 329 N 329

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 163 QNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDL 222
           + I      +D  +N       +     + L  L L +N ++     +F  +  L+ L +
Sbjct: 50  KEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109

Query: 223 SFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG 258
           S N L   IP  L S  +L  L +  NR+  ++P+G
Sbjct: 110 SKNHLV-EIPPNLPS--SLVELRIHDNRI-RKVPKG 141

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 81.2 bits (201), Expect = 1e-17
 Identities = 54/255 (21%), Positives = 88/255 (34%), Gaps = 53/255 (20%)

Query: 1   GSFS--TELITLHLENNSLEGHIH-NTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEV 57
           G F     L TL L NN +   I    FA    L  L L  N+L+  LP  + K   L+ 
Sbjct: 70  GDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKE-LPEKMPK--TLQE 125

Query: 58  VNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTG 117
           + V  N I+         L+++ ++ L +N        +      + L  I ++ T  T 
Sbjct: 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185

Query: 118 FLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSN 177
            +P+ + PS                                   L  +           N
Sbjct: 186 -IPQGLPPS-----------------------------------LTEL-------HLDGN 202

Query: 178 RFHGEISE-VLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLL 236
           +   ++    L    +L  L LS NS++     S  N   L  L L+ NKL  ++P  L 
Sbjct: 203 KIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260

Query: 237 SVTALALLNLSYNRL 251
               + ++ L  N +
Sbjct: 261 DHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.9 bits (182), Expect = 5e-15
 Identities = 37/263 (14%), Positives = 86/263 (32%), Gaps = 39/263 (14%)

Query: 1   GSFS--TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVV 58
           G+F+   +L  L+L  N L+            L+ L ++ N++            ++ VV
Sbjct: 94  GAFAPLVKLERLYLSKNQLKELPEKMPKT---LQELRVHENEITKVRKSVFNGLNQMIVV 150

Query: 59  NVENNMISDSF--PCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFT 116
            +  N +  S         + +L  + +        P          +L  + L   + T
Sbjct: 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-----PPSLTELHLDGNKIT 205

Query: 117 GFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSS 176
             +       +  +  +     L +        SI+    G      ++    R +  ++
Sbjct: 206 -KVDAASLKGLNNLAKLG----LSFN-------SISAVDNGSLANTPHL----RELHLNN 249

Query: 177 NRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVS-------FENMTALESLDLSFNKL-D 228
           N+   ++   L + K ++V+ L +N+++  I  +            +   + L  N +  
Sbjct: 250 NKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307

Query: 229 GRIPEQLLS-VTALALLNLSYNR 250
             I       V   A + L   +
Sbjct: 308 WEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 4/96 (4%)

Query: 163 QNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDL 222
           +++      +D  +N+          N K+L  L L +N ++   P +F  +  LE L L
Sbjct: 48  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107

Query: 223 SFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG 258
           S N+L   +PE++     L  L +  N +  ++ + 
Sbjct: 108 SKNQLK-ELPEKMPK--TLQELRVHENEI-TKVRKS 139

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.4 bits (199), Expect = 2e-17
 Identities = 58/258 (22%), Positives = 100/258 (38%), Gaps = 30/258 (11%)

Query: 2   SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLE--GPLPRSLAKYIKLEVVN 59
              +    L LE+N L+   H  F   + L  L L SN L   G   +S      L+ ++
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 60  VENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITF-PFQALRIIDLSHTEFTGF 118
           +  N +      ++G L +L+ L  + +        S   F   + L  +D+SHT     
Sbjct: 85  LSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFS--VFLSLRNLIYLDISHTHTR-V 140

Query: 119 LPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAM---DFS 175
               IF  + +++ +   G                     +  L +IF   R +   D S
Sbjct: 141 AFNGIFNGLSSLEVLKMAG-----------------NSFQENFLPDIFTELRNLTFLDLS 183

Query: 176 SNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQL 235
             +          +  SL+VLN+SHN+        ++ + +L+ LD S N +     +Q 
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQE 242

Query: 236 LS--VTALALLNLSYNRL 251
           L    ++LA LNL+ N  
Sbjct: 243 LQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.0 bits (151), Expect = 4e-11
 Identities = 40/226 (17%), Positives = 75/226 (33%), Gaps = 44/226 (19%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSL-AKYIKLEVVNVENN 63
           T L  L L  N +   + + F     L  LD   + L+     S+      L  +++ + 
Sbjct: 78  TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136

Query: 64  MISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRI 123
               +F      LS L++L +  N F       +I    + L  +DLS  +    L    
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQCQLE-QLSPTA 194

Query: 124 FPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEI 183
           F S+ +++ ++                                        S N F    
Sbjct: 195 FNSLSSLQVLN---------------------------------------MSHNNFFSLD 215

Query: 184 SEVLGNFKSLKVLNLSHNSLTGNIPVSFENM-TALESLDLSFNKLD 228
           +       SL+VL+ S N +  +     ++  ++L  L+L+ N   
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 4/101 (3%)

Query: 163 QNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLT--GNIPVSFENMTALESL 220
             I      ++  SN+       V      L  L+LS N L+  G    S    T+L+ L
Sbjct: 24  TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83

Query: 221 DLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQF 261
           DLSFN +   +    L +  L  L+  ++ L  ++   + F
Sbjct: 84  DLSFNGV-ITMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVF 122

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 37/207 (17%), Positives = 73/207 (35%), Gaps = 46/207 (22%)

Query: 55  LEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTE 114
              + +E+N +          L++L  L L SN      C S   F   +L+ +DLS   
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 115 FTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDF 174
                                              +++    G + QL+++       DF
Sbjct: 90  VI---------------------------------TMSSNFLGLE-QLEHL-------DF 108

Query: 175 SSNRFHGEISE--VLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 232
             +    ++SE  V  + ++L  L++SH          F  +++LE L ++ N       
Sbjct: 109 QHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167

Query: 233 EQLLS-VTALALLNLSYNRLWGRIPRG 258
             + + +  L  L+LS  +L  ++   
Sbjct: 168 PDIFTELRNLTFLDLSQCQLE-QLSPT 193

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 81.3 bits (201), Expect = 2e-17
 Identities = 56/281 (19%), Positives = 97/281 (34%), Gaps = 52/281 (18%)

Query: 2   SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVE 61
             ST    L+L  N ++    N+F +  HL  L L  N +      +      L  + + 
Sbjct: 61  GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120

Query: 62  NNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITF-PFQALRIIDLSHTEFTGFLP 120
           +N ++         LS+LK L LR+N  +  P      F    +LR +DL   +   ++ 
Sbjct: 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSY---AFNRIPSLRRLDLGELKRLSYIS 177

Query: 121 RRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFH 180
              F  +           L Y+                              + +     
Sbjct: 178 EGAFEGLS---------NLRYL------------------------------NLAMCNLR 198

Query: 181 GEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS-VT 239
            EI   L     L  L+LS N L+   P SF+ +  L+ L +  +++   I       + 
Sbjct: 199 -EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQ 255

Query: 240 ALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPL 280
           +L  +NL++N L   +P       F    ++  I L   P 
Sbjct: 256 SLVEINLAHNNL-TLLPHD----LFTPLHHLERIHLHHNPW 291

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 81.3 bits (201), Expect = 4e-17
 Identities = 32/254 (12%), Positives = 89/254 (35%), Gaps = 12/254 (4%)

Query: 5   TELITLHLENNSL-EGHIHNTFANASHLRSLDLYS-NKLEGPLPRSLAKYIKLEVVNVEN 62
           + L  L+L  N      + + F N ++L++L + +            A    L  + ++ 
Sbjct: 98  SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157

Query: 63  NMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITF-PFQALRIIDLSHTEFTGFLPR 121
             + +     + S+ ++  L L  ++         I      ++R ++L  T    F   
Sbjct: 158 LSLRNYQSQSLKSIRDIHHLTLHLSESAFLL---EIFADILSSVRYLELRDTNLARF-QF 213

Query: 122 RIFPSMEAMKNVDEQG--RLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRF 179
              P  E    + +           +F +    +       +++        +   +   
Sbjct: 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273

Query: 180 HGEISEVLG-NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS- 237
              +SE+      +++ L++    L  ++   +  +  ++ + +  +K+   +P      
Sbjct: 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQH 332

Query: 238 VTALALLNLSYNRL 251
           + +L  L+LS N +
Sbjct: 333 LKSLEFLDLSENLM 346

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 80.9 bits (200), Expect = 4e-17
 Identities = 35/248 (14%), Positives = 78/248 (31%), Gaps = 40/248 (16%)

Query: 4   STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
           +  + +L L  N +    H      ++L+ L L S+++      +      LE +++ +N
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 64  MISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRI 123
            +S     W G LS LK L L  N +      S        L+ + + + E    + R  
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP-NLTNLQTLRIGNVETFSEIRRID 143

Query: 124 FPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEI 183
           F  + ++                                         ++  +       
Sbjct: 144 FAGLTSL---------------------------------------NELEIKALSLRNYQ 164

Query: 184 SEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALAL 243
           S+ L + + +  L L  +     + +  + ++++  L+L    L       L      + 
Sbjct: 165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224

Query: 244 LNLSYNRL 251
           +     R 
Sbjct: 225 MKKLAFRG 232

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 80.2 bits (198), Expect = 9e-17
 Identities = 41/252 (16%), Positives = 89/252 (35%), Gaps = 55/252 (21%)

Query: 4   STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
           +  +  LH+    L   +   ++    ++ + + ++K+             LE +++  N
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344

Query: 64  MISDSFPCWM---GSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLP 120
           ++ + +       G+   L+ LVL  N          I    + L  +D+S         
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN------- 397

Query: 121 RRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFH 180
                                M  +                 + +    R ++ SS    
Sbjct: 398 -----------------TFHPMPDSC-------------QWPEKM----RFLNLSSTG-- 421

Query: 181 GEISEV-LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT 239
             I  V     ++L+VL++S+N+L  +  +    +  L+ L +S NKL   +P+  L   
Sbjct: 422 --IRVVKTCIPQTLEVLDVSNNNLD-SFSL---FLPRLQELYISRNKLK-TLPDASLF-P 473

Query: 240 ALALLNLSYNRL 251
            L ++ +S N+L
Sbjct: 474 VLLVMKISRNQL 485

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 79.4 bits (196), Expect = 1e-16
 Identities = 46/279 (16%), Positives = 92/279 (32%), Gaps = 34/279 (12%)

Query: 5   TELITLHLENNSLEGHI-HNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
           T L TL + N      I    FA  + L  L++ +  L     +SL     +  + +  +
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182

Query: 64  MISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFP---------FQALRIIDLSHTE 114
             +     +   LS ++ L LR         +               F+   + D S  E
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242

Query: 115 FTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFV------- 167
               L   +  S     +    G  ++       + ++   K     ++ + +       
Sbjct: 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSES--DVVSELGKVETVTIRRLHIPQFYLFY 300

Query: 168 ----MFRAM------DFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNI---PVSFENM 214
               ++  +         +++          + KSL+ L+LS N +              
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360

Query: 215 TALESLDLSFNKLD--GRIPEQLLSVTALALLNLSYNRL 251
            +L++L LS N L    +  E LL++  L  L++S N  
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 37/281 (13%), Positives = 84/281 (29%), Gaps = 43/281 (15%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
            ++  L L  +     +       S +R L+L    L       L        +      
Sbjct: 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231

Query: 65  ISD----------SFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQA------LRII 108
            S               ++  LSE++      N       + +             +R +
Sbjct: 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291

Query: 109 DLSHTEFTGFLPRRIFPSMEAMKNVD-EQGRLEYMGRAFCDE---------------SIT 152
            +       +    ++  +E +K +  E  ++  +  +F                     
Sbjct: 292 HIPQFYLF-YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350

Query: 153 VAMKGHDFQLQNIFVMFRAMDFSSNRFH--GEISEVLGNFKSLKVLNLSHNSLTGNIPVS 210
           +          ++    + +  S N      +  E+L   K+L  L++S N+    +P S
Sbjct: 351 LKNSACKGAWPSL----QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDS 405

Query: 211 FENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 251
            +    +  L+LS   +   +   +     L +L++S N L
Sbjct: 406 CQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNL 443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.8 bits (127), Expect = 6e-08
 Identities = 33/201 (16%), Positives = 54/201 (26%), Gaps = 54/201 (26%)

Query: 5   TELITLHLENNSLE--GHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVEN 62
             L TL L  N L              +L SLD+  N    P+P S     K+  +N+ +
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSS 419

Query: 63  NMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRR 122
             I     C       L++L + +N         + +     L+ + +S  +    LP  
Sbjct: 420 TGIRVVKTC---IPQTLEVLDVSNNNL------DSFSLFLPRLQELYISRNKLK-TLPDA 469

Query: 123 IFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGE 182
                           L  M                                S N+    
Sbjct: 470 SLFP-----------VLLVM------------------------------KISRNQLKSV 488

Query: 183 ISEVLGNFKSLKVLNLSHNSL 203
              +     SL+ + L  N  
Sbjct: 489 PDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.3 bits (118), Expect = 9e-07
 Identities = 17/64 (26%), Positives = 30/64 (46%)

Query: 188 GNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLS 247
           G   ++K L+LS N +T            L+ L L  ++++    +   S+ +L  L+LS
Sbjct: 23  GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82

Query: 248 YNRL 251
            N L
Sbjct: 83  DNHL 86

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
             L  L + NN+L+    +       L+ L +  NKL+  LP + + +  L V+ +  N 
Sbjct: 431 QTLEVLDVSNNNLD----SFSLFLPRLQELYISRNKLKT-LPDA-SLFPVLLVMKISRNQ 484

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDC 91
           +          L+ L+ + L +N +DC
Sbjct: 485 LKSVPDGIFDRLTSLQKIWLHTNPWDC 511

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 9/63 (14%)

Query: 192 SLKVLNLSHNSLT---GNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSY 248
           +  V +    S T     +        A++SLDLSFNK+       L +   L +L L  
Sbjct: 6   ASGVCDGRSRSFTSIPSGLT------AAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59

Query: 249 NRL 251
           +R+
Sbjct: 60  SRI 62

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 80.8 bits (200), Expect = 4e-17
 Identities = 51/248 (20%), Positives = 99/248 (39%), Gaps = 39/248 (15%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
             L  ++  NN L         N + L  + + +N++    P  LA    L  + + NN 
Sbjct: 68  NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 123

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           I+D  P  + +L+ L  L L SN        S +T    +L+ +   + + T   P    
Sbjct: 124 ITDIDP--LKNLTNLNRLELSSNTISDISALSGLT----SLQQLSFGN-QVTDLKP---L 173

Query: 125 PSMEAMKNVDEQG-RLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEI 183
            ++  ++ +D    ++  +        +         +L N+     ++  ++N+     
Sbjct: 174 ANLTTLERLDISSNKVSDI------SVLA--------KLTNL----ESLIATNNQISDIT 215

Query: 184 SEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALAL 243
              LG   +L  L+L+ N L      +  ++T L  LDL+ N++    P  L  +T L  
Sbjct: 216 P--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 269

Query: 244 LNLSYNRL 251
           L L  N++
Sbjct: 270 LKLGANQI 277

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 80.8 bits (200), Expect = 5e-17
 Identities = 53/248 (21%), Positives = 96/248 (38%), Gaps = 39/248 (15%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
           T L  L   N   +       AN + L  LD+ SNK+       LAK   LE +   NN 
Sbjct: 156 TSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQ 210

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           ISD  P  +G L+ L  L L  NQ       +++T     L  +DL++ + +   P    
Sbjct: 211 ISDITP--LGILTNLDELSLNGNQLKDIGTLASLT----NLTDLDLANNQISNLAP---L 261

Query: 125 PSMEAMKNVDEQG-RLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEI 183
             +  +  +     ++  +        +          L  +      ++ + N+     
Sbjct: 262 SGLTKLTELKLGANQISNI------SPLA--------GLTAL----TNLELNENQLED-- 301

Query: 184 SEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALAL 243
              + N K+L  L L  N+++   P    ++T L+ L    NK+       L ++T +  
Sbjct: 302 ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINW 357

Query: 244 LNLSYNRL 251
           L+  +N++
Sbjct: 358 LSAGHNQI 365

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 78.1 bits (193), Expect = 3e-16
 Identities = 51/247 (20%), Positives = 100/247 (40%), Gaps = 37/247 (14%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
            ++ TL  +   ++  I       ++L  ++  +N+L    P  L    KL  + + NN 
Sbjct: 46  DQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ 101

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           I+D  P  + +L+ L  L L +NQ        N+T     L  ++LS    +        
Sbjct: 102 IADITP--LANLTNLTGLTLFNNQITDIDPLKNLT----NLNRLELSSNTISDISA---L 152

Query: 125 PSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEIS 184
             + +++ +    ++         +   +A       L  +      +D SSN+      
Sbjct: 153 SGLTSLQQLSFGNQVT--------DLKPLA------NLTTL----ERLDISSNKVSDI-- 192

Query: 185 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL 244
            VL    +L+ L  ++N ++   P     +T L+ L L+ N+L       L S+T L  L
Sbjct: 193 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDL 248

Query: 245 NLSYNRL 251
           +L+ N++
Sbjct: 249 DLANNQI 255

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 77.7 bits (192), Expect = 4e-16
 Identities = 49/245 (20%), Positives = 83/245 (33%), Gaps = 59/245 (24%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
           T L  L L  N L+  I  T A+ ++L  LDL +N++    P  L+   KL  + +  N 
Sbjct: 221 TNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 276

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           IS+  P  +  L+ L  L L  NQ +     SN+      L  + L     +   P    
Sbjct: 277 ISNISP--LAGLTALTNLELNENQLEDISPISNLK----NLTYLTLYFNNISDISP---- 326

Query: 125 PSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEIS 184
                         +  +                  +LQ +        F +N+      
Sbjct: 327 --------------VSSLT-----------------KLQRL-------FFYNNKV--SDV 346

Query: 185 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL 244
             L N  ++  L+  HN ++   P    N+T +  L L+                 +++ 
Sbjct: 347 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYK---ANVSIP 401

Query: 245 NLSYN 249
           N   N
Sbjct: 402 NTVKN 406

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 77.3 bits (191), Expect = 6e-16
 Identities = 45/247 (18%), Positives = 83/247 (33%), Gaps = 58/247 (23%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
           T L +L   NN +           ++L  L L  N+L+     +LA    L  +++ NN 
Sbjct: 199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQ 254

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           IS+  P  +  L++L  L L +NQ       + +T    AL  ++L+  +          
Sbjct: 255 ISNLAP--LSGLTKLTELKLGANQISNISPLAGLT----ALTNLELNENQLED------I 302

Query: 125 PSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEIS 184
             +  +KN                             L  +           N       
Sbjct: 303 SPISNLKN-----------------------------LTYL-------TLYFNNISDISP 326

Query: 185 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL 244
             + +   L+ L   +N ++     S  N+T +  L    N++    P  L ++T +  L
Sbjct: 327 --VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 380

Query: 245 NLSYNRL 251
            L+    
Sbjct: 381 GLNDQAW 387

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 47/249 (18%), Positives = 93/249 (37%), Gaps = 63/249 (25%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
           T L  L L NN +         N ++L  L+L SN +      +L+    L+ ++  N  
Sbjct: 112 TNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQ- 166

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           ++D  P  + +L+ L+ L + SN+       + +T     L  +  ++ + +        
Sbjct: 167 VTDLKP--LANLTTLERLDISSNKVSDISVLAKLT----NLESLIATNNQISDI------ 214

Query: 125 PSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEIS 184
             +  + N                             L  +         + N+    + 
Sbjct: 215 TPLGILTN-----------------------------LDEL-------SLNGNQ----LK 234

Query: 185 EV--LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALA 242
           ++  L +  +L  L+L++N ++   P     +T L  L L  N++    P  L  +TAL 
Sbjct: 235 DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALT 290

Query: 243 LLNLSYNRL 251
            L L+ N+L
Sbjct: 291 NLELNENQL 299

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 71.9 bits (177), Expect = 4e-14
 Identities = 43/254 (16%), Positives = 92/254 (36%), Gaps = 51/254 (20%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
            E +   L   ++   +  +  +   + +L      ++      +     L  +N  NN 
Sbjct: 24  AEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQ 79

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           ++D  P  + +L++L  +++ +NQ       +N+T     L  + L + + T   P +  
Sbjct: 80  LTDITP--LKNLTKLVDILMNNNQIADITPLANLT----NLTGLTLFNNQITDIDPLKNL 133

Query: 125 PSMEA-------MKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSN 177
            ++         + ++     L                      LQ +           N
Sbjct: 134 TNLNRLELSSNTISDISALSGLT--------------------SLQQLSF--------GN 165

Query: 178 RFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS 237
           +        L N  +L+ L++S N ++         +T LESL  + N++    P  +L 
Sbjct: 166 QVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGIL- 220

Query: 238 VTALALLNLSYNRL 251
            T L  L+L+ N+L
Sbjct: 221 -TNLDELSLNGNQL 233

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 37/253 (14%), Positives = 77/253 (30%), Gaps = 57/253 (22%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
           T+L  L L  N +   I    A  + L +L+L  N+LE   P  ++    L  + +  N 
Sbjct: 265 TKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 320

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           ISD  P  + SL++L+ L   +N+       +N+T     +  +   H + +        
Sbjct: 321 ISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLT----NINWLSAGHNQISDL------ 368

Query: 125 PSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEIS 184
             +  +                               +  +         +   +     
Sbjct: 369 TPLANLTR-----------------------------ITQL-------GLNDQAWTNAPV 392

Query: 185 EVLGNFKSLKVLNLSHNSLTGNI-PVSFENMTALESLDLSFNKLDGRIPEQLLSVTALAL 243
               N   + + N   N     I P +  +  +    D+++N       E   + +    
Sbjct: 393 NYKAN---VSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSY-TNEVSYTFSQPVT 448

Query: 244 LNLSYNRLWGRIP 256
           +        G + 
Sbjct: 449 IGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.8 bits (143), Expect = 8e-10
 Identities = 41/258 (15%), Positives = 79/258 (30%), Gaps = 54/258 (20%)

Query: 1   GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNV 60
           G   +  I    ++  +   I  T    +      L    +   +        ++  +  
Sbjct: 1   GPLGSATI---TQDTPIN-QI-FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQA 53

Query: 61  ENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLP 120
           +   I       +  L+ L  +   +NQ        N+T     L  I +++ +     P
Sbjct: 54  DRLGIKS--IDGVEYLNNLTQINFSNNQLTDITPLKNLT----KLVDILMNNNQIADITP 107

Query: 121 RRIFPSMEA-------MKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMD 173
                ++         + ++D    L                      L  +       +
Sbjct: 108 LANLTNLTGLTLFNNQITDIDPLKNLT--------------------NLNRL-------E 140

Query: 174 FSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 233
            SSN         L    SL+ L+  +  +T   P    N+T LE LD+S NK+      
Sbjct: 141 LSSNTISD--ISALSGLTSLQQLSFGNQ-VTDLKP--LANLTTLERLDISSNKV--SDIS 193

Query: 234 QLLSVTALALLNLSYNRL 251
            L  +T L  L  + N++
Sbjct: 194 VLAKLTNLESLIATNNQI 211

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 6/87 (6%)

Query: 173 DFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 232
                     +S    +   +  L      +        E +  L  ++ S N+L    P
Sbjct: 30  VLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQLTDITP 85

Query: 233 EQLLSVTALALLNLSYNRLWGRIPRGN 259
             L ++T L  + ++ N++    P  N
Sbjct: 86  --LKNLTKLVDILMNNNQIADITPLAN 110

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.6 bits (199), Expect = 4e-17
 Identities = 48/288 (16%), Positives = 95/288 (32%), Gaps = 60/288 (20%)

Query: 2   SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVE 61
              +    L+L  N+++    +TF +  HL  L L  N +      +      L  + + 
Sbjct: 72  GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131

Query: 62  NNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNI---TF-PFQALRIIDLSHTEFTG 117
           +N ++         LS+L+ L LR+N         +I    F    +L  +DL   +   
Sbjct: 132 DNWLTVIPSGAFEYLSKLRELWLRNNPI------ESIPSYAFNRVPSLMRLDLGELKKLE 185

Query: 118 FLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSN 177
           ++    F  +  +                                       + ++    
Sbjct: 186 YISEGAFEGLFNL---------------------------------------KYLNLGMC 206

Query: 178 RFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS 237
               ++   L     L+ L +S N      P SF  +++L+ L +  +++   I      
Sbjct: 207 NIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFD 263

Query: 238 -VTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRC 284
            + +L  LNL++N L   +P       F    Y+  + L   P    C
Sbjct: 264 GLASLVELNLAHNNL-SSLPHD----LFTPLRYLVELHLHHNPW--NC 304

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 77.1 bits (190), Expect = 6e-16
 Identities = 61/324 (18%), Positives = 100/324 (30%), Gaps = 47/324 (14%)

Query: 1   GSFS--TELITLHLENNSLEGHI--HNTFANASHLRSLDLYSNKLEGPLPRSL-AKYIKL 55
           G+F+    L  L L   +L+G +   N F   + L  L L  N ++   P S      + 
Sbjct: 97  GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156

Query: 56  EVVNVENNMIS----DSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQA------L 105
            V+++  N +     +             +L L S                        +
Sbjct: 157 HVLDLTFNKVKSICEEDL--LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSI 214

Query: 106 RIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDF----- 160
             +DLS   F   + +R F ++   K         Y   +    +         F     
Sbjct: 215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA 274

Query: 161 -----------QLQNI-------FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNS 202
                      ++  +       F     +  + N  +            L  LNLS N 
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334

Query: 203 LTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS-VTALALLNLSYNRLWGRIPRGNQF 261
           L       FEN+  LE LDLS+N +   + +Q    +  L  L L  N+L   +P G   
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLK-SVPDG--- 389

Query: 262 NTFQNDSYIGNIRLCGEPLTVRCS 285
             F   + +  I L   P    C 
Sbjct: 390 -IFDRLTSLQKIWLHTNPWDCSCP 412

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 65.2 bits (159), Expect = 6e-12
 Identities = 50/270 (18%), Positives = 98/270 (36%), Gaps = 25/270 (9%)

Query: 1   GSFS--TELITLHLENNSLEGHIH-NTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEV 57
            SFS   +L  L +E  +    I  NTF   S L  L L  N+       +      LEV
Sbjct: 48  TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107

Query: 58  VNVENNMISDSF--PCWMGSLSELKILVLRSNQFDC-PPCNSNITFPFQALRIIDLSHTE 114
           + +    +  +     +   L+ L++LVLR N      P  ++     +   ++DL+  +
Sbjct: 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP--ASFFLNMRRFHVLDLTFNK 165

Query: 115 FTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDE-SITVAMKGHDFQLQ---------N 164
               +      + +         RL  +     +E  +     G+ F+           N
Sbjct: 166 VKS-ICEEDLLNFQ--GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN 222

Query: 165 IFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENM--TALESLDL 222
            F    A  F       +I  ++ +       +  H +       +F+ +  + +++ DL
Sbjct: 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL 282

Query: 223 SFNKLDGRIPEQLLS-VTALALLNLSYNRL 251
           S +K+   + + + S  T L  L L+ N +
Sbjct: 283 SKSKI-FALLKSVFSHFTDLEQLTLAQNEI 311

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 46/279 (16%), Positives = 89/279 (31%), Gaps = 39/279 (13%)

Query: 29  SHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWM-GSLSELKILVLRSN 87
           +H+  +DL  N +      S ++   L+ + VE               LS L IL L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 88  QFDCPPCNSNITF-PFQALRIIDLSHTEFTG-FLPRRIFPSMEAMKNVDEQG-RLEYMGR 144
           QF          F     L ++ L+     G  L    F  + +++ +  +   ++    
Sbjct: 90  QFLQLETG---AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK---- 142

Query: 145 AFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKV--------- 195
                   +        ++        +D + N+      E L NF+             
Sbjct: 143 -------KIQPASFFLNMRRF----HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT 191

Query: 196 -LNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE---QLLSVTALALLNLSYNRL 251
             +++   L      +    T++ +LDLS N     + +     ++ T +  L LS +  
Sbjct: 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251

Query: 252 WGRIPRGNQFNTFQNDSYIGNIRLCGEPLT-VRCSNDGL 289
            G       F    N ++ G   L    +     S   +
Sbjct: 252 MGSSFGHTNFKDPDNFTFKG---LEASGVKTCDLSKSKI 287

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 71.1 bits (174), Expect = 4e-14
 Identities = 51/260 (19%), Positives = 84/260 (32%), Gaps = 30/260 (11%)

Query: 4   STELITLHLENNSLEGHIHNTFA---NASHLRSLDLYSNKLEGPLPRSLAKYI--KLEVV 58
           S  L  L +    +   I          S L+ L L + ++ G  P  L +     L ++
Sbjct: 67  SLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNIL 126

Query: 59  NVENNMISDSFPCWMGSLSE-----LKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHT 113
           N+ N   +     W+  L +     LK+L +         C       F AL  +DLS  
Sbjct: 127 NLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ--VRVFPALSTLDLSDN 183

Query: 114 EFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCD-ESITVAMKGHDFQLQNIFVMFRAM 172
              G         + +     +   L+ +       E+ +            +    + +
Sbjct: 184 PELGERG------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL----QGL 233

Query: 173 DFSSNRFHGEISEVLGNF-KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRI 231
           D S N           ++   L  LNLS   L             L  LDLS+N+LD R 
Sbjct: 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLSYNRLD-RN 289

Query: 232 PEQLLSVTALALLNLSYNRL 251
           P     +  +  L+L  N  
Sbjct: 290 P-SPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.2 bits (169), Expect = 1e-13
 Identities = 35/257 (13%), Positives = 75/257 (29%), Gaps = 55/257 (21%)

Query: 10  LHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAK---YIKLEVVNVENNMIS 66
           L   +   +         +  L+ L + + ++   +     +      L+ + +EN  ++
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 67  DSFPCWMGSLSELKILVLRSNQFDCPPCNSNIT----FPFQALRIIDLSHTEFTGFLPRR 122
            + P  +   +   + +L          ++ +     +    L+++ ++      F    
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF---- 164

Query: 123 IFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGE 182
               +           L  +                              D S N   GE
Sbjct: 165 SCEQVRVFPA------LSTL------------------------------DLSDNPELGE 188

Query: 183 I----SEVLGNFKSLKVLNLSHN---SLTGNIPVSFENMTALESLDLSFNKLDGRIPEQL 235
                +     F +L+VL L +    + +G           L+ LDLS N L        
Sbjct: 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

Query: 236 LS-VTALALLNLSYNRL 251
               + L  LNLS+  L
Sbjct: 249 CDWPSQLNSLNLSFTGL 265

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.4 bits (128), Expect = 3e-08
 Identities = 31/209 (14%), Positives = 52/209 (24%), Gaps = 53/209 (25%)

Query: 4   STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEG--PLPRSLAKYI--KLEVVN 59
              L  L +                  L +LDL  N   G   L  +L       L+V+ 
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 60  VENNM---ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFT 116
           + N      S        +  +L+ L L  N         +  +P   L  ++LS T   
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP-SQLNSLNLSFTGLK 266

Query: 117 GFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSS 176
             +P+ +   +                                            +D S 
Sbjct: 267 Q-VPKGLPAKLS------------------------------------------VLDLSY 283

Query: 177 NRFHGEISEVLGNFKSLKVLNLSHNSLTG 205
           NR     +        +  L+L  N    
Sbjct: 284 NRLDR--NPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 7/98 (7%)

Query: 170 RAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFE----NMTALESLDLSFN 225
           + +  +         E +  F +L  L+LS N   G   +           L+ L L   
Sbjct: 152 KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211

Query: 226 K---LDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQ 260
                 G       +   L  L+LS+N L       + 
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 71.8 bits (176), Expect = 5e-14
 Identities = 40/247 (16%), Positives = 77/247 (31%), Gaps = 53/247 (21%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
                L++  + L   + +      H+ +L +  N L   LP    +   L  + V  N 
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLTS-LPALPPE---LRTLEVSGNQ 92

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           ++ S P     L EL I           P           L  + +   + T  LP    
Sbjct: 93  LT-SLPVLPPGLLELSIFSNPLTHLPALPSG---------LCKLWIFGNQLT-SLP---- 137

Query: 125 PSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEIS 184
                ++ +     +     A      +        +L  +          +N+    ++
Sbjct: 138 VLPPGLQELS----VSDNQLASLPALPS--------ELCKL-------WAYNNQ----LT 174

Query: 185 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL 244
            +      L+ L++S N L  ++P     +  L + +     L    P      + L  L
Sbjct: 175 SLPMLPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSL----PALP---SGLKEL 226

Query: 245 NLSYNRL 251
            +S NRL
Sbjct: 227 IVSGNRL 233

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 69.2 bits (169), Expect = 4e-13
 Identities = 43/251 (17%), Positives = 82/251 (32%), Gaps = 56/251 (22%)

Query: 2   SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVE 61
                + TL + +N+L   +         LR+L++  N+L   LP      ++L + +  
Sbjct: 58  CLPAHITTLVIPDNNLT-SLPALPPE---LRTLEVSGNQLTS-LPVLPPGLLELSIFSNP 112

Query: 62  NNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPR 121
              +           S L  L +  NQ    P           L+ + +S  +       
Sbjct: 113 LTHLPA-------LPSGLCKLWIFGNQLTSLPVL------PPGLQELSVSDNQLA----- 154

Query: 122 RIFPSMEAMKNVDEQG-RLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFH 180
            +      +  +     +L  +         +         LQ +         S N+  
Sbjct: 155 SLPALPSELCKLWAYNNQLTSL-----PMLPS--------GLQEL-------SVSDNQLA 194

Query: 181 GEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA 240
             +  +      L  L   +N LT ++P      + L+ L +S N+L   +P      + 
Sbjct: 195 -SLPTLPSE---LYKLWAYNNRLT-SLP---ALPSGLKELIVSGNRL-TSLPVLP---SE 242

Query: 241 LALLNLSYNRL 251
           L  L +S NRL
Sbjct: 243 LKELMVSGNRL 253

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 64.5 bits (157), Expect = 1e-11
 Identities = 44/256 (17%), Positives = 82/256 (32%), Gaps = 67/256 (26%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
             L  L + +N L   +    +    L  L  Y+N+L   LP   +    L+ ++V +N 
Sbjct: 141 PGLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLTS-LPMLPSG---LQELSVSDNQ 192

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           ++ S P     L +L     R       P           L+ + +S    T  LP    
Sbjct: 193 LA-SLPTLPSELYKLWAYNNRLTSLPALPSG---------LKELIVSGNRLTS-LP---- 237

Query: 125 PSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEIS 184
                                      +        +L+ + V       S NR    + 
Sbjct: 238 ------------------------VLPS--------ELKELMV-------SGNRL-TSLP 257

Query: 185 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL 244
            +      L  L++  N LT  +P S  ++++  +++L  N L  R  + L  +T+    
Sbjct: 258 MLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGY 313

Query: 245 NLSYNRLWGRIPRGNQ 260
           +    R         +
Sbjct: 314 SGPIIRFDMAGASAPR 329

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 70.1 bits (172), Expect = 2e-13
 Identities = 41/290 (14%), Positives = 88/290 (30%), Gaps = 45/290 (15%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
           T+L TL    N +        +    L  L+  +N +       L + I+L  ++  +N 
Sbjct: 170 TQLTTLDCSFNKIT---ELDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNK 223

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           ++      +  L++L       N       ++        L  +    T+          
Sbjct: 224 LT-EID--VTPLTQLTYFDCSVNPLTELDVST-----LSKLTTLHCIQTDLLEI------ 269

Query: 125 PSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEIS 184
                  ++    +L Y     C +   + +         +      +D  +      I+
Sbjct: 270 -------DLTHNTQLIYFQAEGCRKIKELDVT----HNTQL----YLLDCQAAG----IT 310

Query: 185 EV-LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALAL 243
           E+ L     L  L L++  LT  + VS  + T L+SL      +       +  + AL  
Sbjct: 311 ELDLSQNPKLVYLYLNNTELT-ELDVS--HNTKLKSLSCVNAHIQD-FSS-VGKIPALNN 365

Query: 244 LNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPKAP 293
              +  +           N+         +   G P+ +   + G+    
Sbjct: 366 NFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQA 415

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 44/256 (17%), Positives = 88/256 (34%), Gaps = 42/256 (16%)

Query: 6   ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMI 65
             +    E  + +     +    + L SLD +++ +   +   + K   L  +   +N I
Sbjct: 22  SEVAAAFEMQATD---TISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNI 76

Query: 66  SDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITF-PFQALRIIDLSHTEFTGFLPRRIF 124
           + +    +   + L  L   SN+       +N+   P   L  ++    + T  L     
Sbjct: 77  T-TLD--LSQNTNLTYLACDSNKL------TNLDVTPLTKLTYLNCDTNKLTK-LDVSQN 126

Query: 125 PSMEAMK---------NVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFS 175
           P +  +          +V    +L  +      +   + +         +      +D S
Sbjct: 127 PLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTP----QTQL----TTLDCS 178

Query: 176 SNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQL 235
            N+   E+   +   K L  LN   N++T  + ++      L  LD S NKL   I   +
Sbjct: 179 FNKIT-ELD--VSQNKLLNRLNCDTNNIT-KLDLN--QNIQLTFLDCSSNKLT-EID--V 229

Query: 236 LSVTALALLNLSYNRL 251
             +T L   + S N L
Sbjct: 230 TPLTQLTYFDCSVNPL 245

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 45/250 (18%), Positives = 79/250 (31%), Gaps = 50/250 (20%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
           T L  L   +N++        +  ++L  L   SNKL       +    KL  +N + N 
Sbjct: 64  TGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNK 117

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITF-PFQALRIIDLSHTEFTGFLPRRI 123
           ++            L  L    N        + I       L  +D    +    L    
Sbjct: 118 LTKLDV---SQNPLLTYLNCARNTL------TEIDVSHNTQLTELDCHLNKKITKLD--- 165

Query: 124 FPSMEAMKNVD-EQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGE 182
                 +  +D    ++           + V+      Q + +      ++  +N     
Sbjct: 166 VTPQTQLTTLDCSFNKI---------TELDVS------QNKLL----NRLNCDTNN---- 202

Query: 183 ISEV-LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTAL 241
           I+++ L     L  L+ S N LT  I V+   +T L   D S N L   +    L  + L
Sbjct: 203 ITKLDLNQNIQLTFLDCSSNKLT-EIDVT--PLTQLTYFDCSVNPLT-ELDVSTL--SKL 256

Query: 242 ALLNLSYNRL 251
             L+     L
Sbjct: 257 TTLHCIQTDL 266

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 39/252 (15%), Positives = 69/252 (27%), Gaps = 53/252 (21%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
           T+L  L    N     +       + L +LD   NK+       +++   L  +N + N 
Sbjct: 148 TQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNN 202

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITF-PFQALRIIDLSHTEFTGFLPRRI 123
           I+      +    +L  L   SN+       + I   P   L   D S    T  L    
Sbjct: 203 IT-KLD--LNQNIQLTFLDCSSNKL------TEIDVTPLTQLTYFDCSVNPLTE-LDVST 252

Query: 124 FPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI----FVMFRAMDFSSNRF 179
              +  +                               L  I                R 
Sbjct: 253 LSKLTTLHC-------------------------IQTDLLEIDLTHNTQLIYFQAEGCRK 287

Query: 180 HGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT 239
             E+   + +   L +L+     +T  + +S      L  L L+  +L   +       T
Sbjct: 288 IKELD--VTHNTQLYLLDCQAAGIT-ELDLS--QNPKLVYLYLNNTELT-ELDVSHN--T 339

Query: 240 ALALLNLSYNRL 251
            L  L+     +
Sbjct: 340 KLKSLSCVNAHI 351

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 41/248 (16%), Positives = 69/248 (27%), Gaps = 45/248 (18%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
             L  L+   N+L        ++ + L  LD + NK    L   +    +L  ++   N 
Sbjct: 127 PLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK 181

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           I++     +     L  L   +N       N N       L  +D S  + T        
Sbjct: 182 ITELD---VSQNKLLNRLNCDTNNITKLDLNQN-----IQLTFLDCSSNKLTEI------ 227

Query: 125 PSMEAMKNVDEQGRLEYMGRAFCDE-SITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEI 183
                  +V    +L Y     C    +T        +L  +                EI
Sbjct: 228 -------DVTPLTQLTYF---DCSVNPLTELDVSTLSKLTTL-------HCIQTDLL-EI 269

Query: 184 SEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALAL 243
              L +   L             + V+  + T L  LD     +   +         L  
Sbjct: 270 D--LTHNTQLIYFQAEGCRKIKELDVT--HNTQLYLLDCQAAGIT-ELDLSQN--PKLVY 322

Query: 244 LNLSYNRL 251
           L L+   L
Sbjct: 323 LYLNNTEL 330

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 40/223 (17%), Positives = 74/223 (33%), Gaps = 41/223 (18%)

Query: 31  LRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFD 90
             S    + +++     S  +   L  ++  N+ I+D     +  L+ L  L+  SN   
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNIT 77

Query: 91  CPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDE- 149
               + N       L  +     + T               +V    +L Y+    CD  
Sbjct: 78  TLDLSQN-----TNLTYLACDSNKLTNL-------------DVTPLTKLTYL---NCDTN 116

Query: 150 SITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEV-LGNFKSLKVLNLSHNSLTGNIP 208
            +T      +  L  +       + + N     ++E+ + +   L  L+   N     + 
Sbjct: 117 KLTKLDVSQNPLLTYL-------NCARNT----LTEIDVSHNTQLTELDCHLNKKITKLD 165

Query: 209 VSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 251
           V+    T L +LD SFNK+      Q      L  LN   N +
Sbjct: 166 VT--PQTQLTTLDCSFNKITELDVSQN---KLLNRLNCDTNNI 203

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 34/253 (13%), Positives = 81/253 (32%), Gaps = 48/253 (18%)

Query: 2   SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVE 61
           S +  L  L+ + N++   +         L  LD  SNKL   +   +    +L   +  
Sbjct: 188 SQNKLLNRLNCDTNNIT-KL--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCS 241

Query: 62  NNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITF-PFQALRIIDLSHTEFTGFLP 120
            N ++      + +LS+L  L               I       L             L 
Sbjct: 242 VNPLT-ELD--VSTLSKLTTLHCIQTDL------LEIDLTHNTQLIYFQAEGCRKIKELD 292

Query: 121 RRIFPSMEAMKNVD-EQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRF 179
                    +  +D +   +           + ++      Q   +      +  ++   
Sbjct: 293 ---VTHNTQLYLLDCQAAGI---------TELDLS------QNPKL----VYLYLNNTE- 329

Query: 180 HGEISEV-LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSV 238
              ++E+ + +   LK L+  +  +  +   S   + AL +   +  +    +P++ L+ 
Sbjct: 330 ---LTELDVSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI-TMPKETLTN 383

Query: 239 TALALLNLSYNRL 251
            +L  + +S + L
Sbjct: 384 NSL-TIAVSPDLL 395

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 68.6 bits (168), Expect = 4e-13
 Identities = 47/296 (15%), Positives = 103/296 (34%), Gaps = 32/296 (10%)

Query: 3   FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVEN 62
            +  + +L L NN +    ++      +L++L L SN +      S +    LE +++  
Sbjct: 50  LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109

Query: 63  NMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRR 122
           N +S+    W   LS L  L L  N +      +++      L+I+ + + +    + R+
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLG-ETSLFSHLTKLQILRVGNMDTFTKIQRK 168

Query: 123 IFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGE 182
            F  +  ++ ++                +          +QN+      +     +    
Sbjct: 169 DFAGLTFLEELE-----------IDASDLQSYEPKSLKSIQNV----SHLILHMKQHILL 213

Query: 183 ISEVLGNFKSLKVLNLSHNSLTGN----IPV----SFENMTALESLDLSFNKLDGRIPEQ 234
           +   +    S++ L L    L       +      S        ++ ++   L  ++ + 
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL-FQVMKL 272

Query: 235 LLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLP 290
           L  ++ L  L  S N+L   +P G     F   + +  I L   P    CS   + 
Sbjct: 273 LNQISGLLELEFSRNQLKS-VPDG----IFDRLTSLQKIWLHTNPW--DCSCPRID 321

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 5/102 (4%)

Query: 163 QNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPV-SFENMTALESLD 221
             +    +++D S+NR     +  L    +L+ L L+ N +   I   SF ++ +LE LD
Sbjct: 48  SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLD 106

Query: 222 LSFNKLDGRIPEQLLS-VTALALLNLSYNRLWGRIPRGNQFN 262
           LS+N L   +       +++L  LNL  N     +   + F+
Sbjct: 107 LSYNYL-SNLSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFS 146

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 68.1 bits (167), Expect = 7e-13
 Identities = 46/247 (18%), Positives = 80/247 (32%), Gaps = 68/247 (27%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
             L+  +    +L             L  L + +N+LE  LP  L     L++++V+NN 
Sbjct: 114 KSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNS 164

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           +    P        L+ +   +NQ +  P   N+      L  I   +      LP    
Sbjct: 165 LK-KLP---DLPPSLEFIAAGNNQLEELPELQNLP----FLTAIYADNNSLK-KLPDLPL 215

Query: 125 PSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEIS 184
                                                L++I          +N    E+ 
Sbjct: 216 ------------------------------------SLESI-------VAGNNILE-ELP 231

Query: 185 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL 244
           E L N   L  +   +N L   +P    +   LE+L++  N L   +PE   S+T L + 
Sbjct: 232 E-LQNLPFLTTIYADNNLLK-TLPDLPPS---LEALNVRDNYLT-DLPELPQSLTFLDVS 285

Query: 245 NLSYNRL 251
              ++ L
Sbjct: 286 ENIFSGL 292

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 43/273 (15%), Positives = 69/273 (25%), Gaps = 83/273 (30%)

Query: 5   TELITLHLENNSLEGHIHNTFAN-------------ASHLRSLDLYSNKLEGPLPRSLAK 51
                 +   +  E +                          L+L +  L   LP     
Sbjct: 34  KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPPH 92

Query: 52  YIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPP---------CNSNITFP- 101
              LE +    N ++   P    SL  L +           P          N     P 
Sbjct: 93  ---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPE 148

Query: 102 ---FQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGH 158
                 L+IID+ +      LP                  LE++                
Sbjct: 149 LQNSSFLKIIDVDNNSLK-KLPDLP-------------PSLEFI---------------- 178

Query: 159 DFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALE 218
                            +N+   E+ E L N   L  +   +NSL   +P    +   LE
Sbjct: 179 --------------AAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPLS---LE 218

Query: 219 SLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 251
           S+    N L      +L ++  L  +    N L
Sbjct: 219 SIVAGNNIL--EELPELQNLPFLTTIYADNNLL 249

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 38/263 (14%), Positives = 80/263 (30%), Gaps = 62/263 (23%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYI----------- 53
           T L      +++L   +     N           ++ E   P    +             
Sbjct: 11  TFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 54  --KLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQF-DCPPCNSNITFPFQALRIIDL 110
             +   + + N  +S S P        L+ LV   N   + P    ++    ++L + + 
Sbjct: 70  DRQAHELELNNLGLS-SLP---ELPPHLESLVASCNSLTELPELPQSL----KSLLVDNN 121

Query: 111 SHTEFTGFLP--RRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVM 168
           +    +   P    +  S   ++ + E                          L+ I   
Sbjct: 122 NLKALSDLPPLLEYLGVSNNQLEKLPELQNSS--------------------FLKII--- 158

Query: 169 FRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 228
               D  +N     + ++     SL+ +   +N L   +P   +N+  L ++    N L 
Sbjct: 159 ----DVDNNS----LKKLPDLPPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK 208

Query: 229 GRIPEQLLSVTALALLNLSYNRL 251
            ++P+  LS   L  +    N L
Sbjct: 209 -KLPDLPLS---LESIVAGNNIL 227

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 46/245 (18%), Positives = 80/245 (32%), Gaps = 68/245 (27%)

Query: 7   LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMIS 66
           L  L + NN LE  +     N+S L+ +D+ +N L+  LP        LE +   NN + 
Sbjct: 133 LEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPDLPP---SLEFIAAGNNQLE 186

Query: 67  DSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPS 126
              P  + +L  L  +   +N     P          +L  I   +            P 
Sbjct: 187 -ELPE-LQNLPFLTAIYADNNSLKKLPDL------PLSLESIVAGNNILE------ELPE 232

Query: 127 MEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEV 186
           ++ +        L                                +   +N     +  +
Sbjct: 233 LQNLPF------LTT------------------------------IYADNNL----LKTL 252

Query: 187 LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL 246
                SL+ LN+  N LT ++P   +++T L+  +  F+ L    P        L  LN 
Sbjct: 253 PDLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPN-------LYYLNA 304

Query: 247 SYNRL 251
           S N +
Sbjct: 305 SSNEI 309

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 59.6 bits (145), Expect = 4e-10
 Identities = 48/266 (18%), Positives = 88/266 (33%), Gaps = 71/266 (26%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
             L  ++ +NNSL+            L S+   +N LE      L     L  +  +NN+
Sbjct: 195 PFLTAIYADNNSLK----KLPDLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNL 248

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           +  + P    SL  L +           P +         L  +D+S   F+G L     
Sbjct: 249 LK-TLPDLPPSLEALNVRDNYLTDLPELPQS---------LTFLDVSENIFSG-LSELP- 296

Query: 125 PSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAM---DFSSNRFHG 181
                         L Y+                  +++++  +  ++   + S+N+   
Sbjct: 297 ------------PNLYYL-------------NASSNEIRSLCDLPPSLEELNVSNNKLI- 330

Query: 182 EISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTAL 241
           E+  +      L+ L  S N L   +P   +N   L+ L + +N L    P+   SV  L
Sbjct: 331 ELPALPPR---LERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPDIPESVEDL 382

Query: 242 AL----------------LNLSYNRL 251
            +                L++  N L
Sbjct: 383 RMNSHLAEVPELPQNLKQLHVETNPL 408

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 47/262 (17%), Positives = 87/262 (33%), Gaps = 67/262 (25%)

Query: 7   LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMIS 66
           L ++   NN LE        N   L ++   +N L+  LP        LE +NV +N ++
Sbjct: 217 LESIVAGNNILE--ELPELQNLPFLTTIYADNNLLKT-LPDLPP---SLEALNVRDNYLT 270

Query: 67  DSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPS 126
              P    SL+ L +     +     P N         L  ++ S  E        +   
Sbjct: 271 -DLPELPQSLTFLDVSENIFSGLSELPPN---------LYYLNASSNEIR-----SLCDL 315

Query: 127 MEAMKNVD-EQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISE 185
             +++ ++    +L  +                  +L+ +         S N    E+ E
Sbjct: 316 PPSLEELNVSNNKLIEL-----PALPP--------RLERL-------IASFNHLA-EVPE 354

Query: 186 VLGNFKSLKVLNLSHNSLTGNIPVSFENMT----------------ALESLDLSFNKLDG 229
           +  N   LK L++ +N L    P   E++                  L+ L +  N L  
Sbjct: 355 LPQN---LKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR- 409

Query: 230 RIPEQLLSVTALALLNLSYNRL 251
             P+   S   +  L ++  R+
Sbjct: 410 EFPDIPES---VEDLRMNSERV 428

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 29/223 (13%), Positives = 64/223 (28%), Gaps = 50/223 (22%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
           T L       + L     N       L  L+  SN++   L         LE +NV NN 
Sbjct: 280 TFLDVSENIFSGLSELPPN-------LYYLNASSNEIRS-LCDLPPS---LEELNVSNNK 328

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           +    P        L+ L+   N        + +    Q L+ + + +            
Sbjct: 329 LI-ELPA---LPPRLERLIASFNHL------AEVPELPQNLKQLHVEYNPLR-----EFP 373

Query: 125 PSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEIS 184
              E+++++     L                     ++  +    + +   +N    E  
Sbjct: 374 DIPESVEDLRMNSHLA--------------------EVPELPQNLKQLHVETNPLR-EFP 412

Query: 185 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 227
           ++  +   ++ L ++   +      + E    LE      +  
Sbjct: 413 DIPES---VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 191 KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNR 250
           +    L L++  L+ ++P    +   LESL  S N L   +PE   S+ +L + N +   
Sbjct: 71  RQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 125

Query: 251 LWGRIP 256
           L    P
Sbjct: 126 LSDLPP 131

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 1/69 (1%)

Query: 183 ISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALA 242
           I+    +   L+      ++LT  +PV  EN+ +      ++++ +   P        +A
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 243 LLNLSYNRL 251
           +  L     
Sbjct: 62  VSRLRDCLD 70

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.2 bits (164), Expect = 1e-12
 Identities = 40/246 (16%), Positives = 90/246 (36%), Gaps = 44/246 (17%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
             L    + ++         +   S++   +   +          +K      ++  NN+
Sbjct: 276 KALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL 335

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           ++D+     G L+EL+ L+L+ NQ       + +T   ++L+ +D+S    +    +   
Sbjct: 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395

Query: 125 PSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEIS 184
              +++ +                                       ++ SSN     I 
Sbjct: 396 SWTKSLLS---------------------------------------LNMSSNILTDTIF 416

Query: 185 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLL-SVTALAL 243
             L     +KVL+L  N +  +IP     + AL+ L+++ N+L   +P+ +   +T+L  
Sbjct: 417 RCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQK 472

Query: 244 LNLSYN 249
           + L  N
Sbjct: 473 IWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 64.1 bits (156), Expect = 1e-11
 Identities = 38/251 (15%), Positives = 77/251 (30%), Gaps = 9/251 (3%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLR-SLDLYSNKLEGPLPRSLAKY--IKLEVVNVE 61
           ++L  L L    LE       A+ +  +  L L     E   P  L  +    L +V   
Sbjct: 115 SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174

Query: 62  NNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGF-LP 120
           N          + +++ L++  ++    D   C+  ++   +      LS+         
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNK-CSYFLSILAKLQTNPKLSNLTLNNIETT 233

Query: 121 RRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFH 180
              F  +  +                  +            L+ + +        S+ F 
Sbjct: 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH----QVVSDVFG 289

Query: 181 GEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA 240
              S +   F ++ + N + +       +    ++    LD S N L   + E    +T 
Sbjct: 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349

Query: 241 LALLNLSYNRL 251
           L  L L  N+L
Sbjct: 350 LETLILQMNQL 360

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.8 bits (150), Expect = 9e-11
 Identities = 53/275 (19%), Positives = 88/275 (32%), Gaps = 44/275 (16%)

Query: 24  TFANASHLRSLDLYSNKLEGPLPRSLAKYI-----KLEVVNVENNMISDSFPCWMGSLSE 78
                + +    + + KL+G L      Y       L +  V +++            S 
Sbjct: 242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSN 301

Query: 79  LKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQG- 137
           + I     +                    +D S+   T          +  ++ +  Q  
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKIS--PFLHLDFSNNLLTD-TVFENCGHLTELETLILQMN 358

Query: 138 RLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAM------DFSSNRF-HGEISEVLGNF 190
           +L+                    +L  I  M   M      D S N   + E        
Sbjct: 359 QLK--------------------ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398

Query: 191 KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNR 250
           KSL  LN+S N LT  I         ++ LDL  NK+   IP+Q++ + AL  LN++ N+
Sbjct: 399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQ 455

Query: 251 LWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCS 285
           L   +P G     F   + +  I L   P    C 
Sbjct: 456 L-KSVPDG----IFDRLTSLQKIWLHTNPWDCSCP 485

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.8 bits (137), Expect = 4e-09
 Identities = 47/283 (16%), Positives = 92/283 (32%), Gaps = 24/283 (8%)

Query: 4   STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
           S +   L++  N +     +   + S LR L +  N+++           +LE +++ +N
Sbjct: 20  SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79

Query: 64  MISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFT--GFLPR 121
            +     C       LK L L  N FD  P           L+ + LS T       LP 
Sbjct: 80  KLV-KISC--HPTVNLKHLDLSFNAFDALPICKEFG-NMSQLKFLGLSTTHLEKSSVLPI 135

Query: 122 RIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHG 181
                 + +  + E    +       D +            +  F++  ++   +N    
Sbjct: 136 AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 182 EISEVL---------------GNFKSLKVLNLSHNSLTGNIPVS---FENMTALESLDLS 223
            I  VL                    L  L L++   T N  +        T +    +S
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255

Query: 224 FNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQN 266
             KL G++  +    +  +L  LS +++   +    Q   ++ 
Sbjct: 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 3/87 (3%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
             L++L++ +N L   I         ++ LDL+SNK++  +P+ + K   L+ +NV +N 
Sbjct: 399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQ 455

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDC 91
           +          L+ L+ + L +N +DC
Sbjct: 456 LKSVPDGIFDRLTSLQKIWLHTNPWDC 482

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 47/253 (18%), Positives = 73/253 (28%), Gaps = 53/253 (20%)

Query: 3   FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVEN 62
                  + L  N +      +F    +L  L L+SN L      +      LE +++ +
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 63  NM-ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNI---TF-PFQALRIIDLSHTEFTG 117
           N  +    P     L  L  L L             +    F    AL+ + L       
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGL------QELGPGLFRGLAALQYLYLQDNALQ- 142

Query: 118 FLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSN 177
            LP   F  +         G L ++                                  N
Sbjct: 143 ALPDDTFRDL---------GNLTHL------------------------------FLHGN 163

Query: 178 RFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLL- 236
           R             SL  L L  N +    P +F ++  L +L L  N L   +P + L 
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALA 222

Query: 237 SVTALALLNLSYN 249
            + AL  L L+ N
Sbjct: 223 PLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 2/97 (2%)

Query: 163 QNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDL 222
             I    + +    NR     +      ++L +L L  N L      +F  +  LE LDL
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 223 SFNKLDGRIPEQLLS-VTALALLNLSYNRLWGRIPRG 258
           S N     +       +  L  L+L    L   +  G
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPG 123

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 5/77 (6%)

Query: 184 SEVLGNFKSLKVLNLSHNSLTGNIPV-SFENMTALESLDLSFNKLDGRIPEQLLS-VTAL 241
                    L  L+L    L   +    F  + AL+ L L  N L   +P+     +  L
Sbjct: 98  PATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNL 155

Query: 242 ALLNLSYNRLWGRIPRG 258
             L L  NR+   +P  
Sbjct: 156 THLFLHGNRIS-SVPER 171

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 2/93 (2%)

Query: 1   GSFS--TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVV 58
            +F     L  L L  N +       F     L  L L+ N++    P +     +L  +
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 59  NVENNMISDSFPCWMGSLSELKILVLRSNQFDC 91
            +  N +S      +  L  L+ L L  N + C
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.3 bits (161), Expect = 3e-12
 Identities = 37/254 (14%), Positives = 86/254 (33%), Gaps = 72/254 (28%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNK---LEGPLPRSLAKYIKLEVVNVE 61
            E I  +L+  S+   +  T    + +  +   ++    ++G     +     +  + + 
Sbjct: 21  AETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG-----IQYLPNVTKLFLN 73

Query: 62  NNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITF--PFQALRIIDLSHTEFTGFL 119
            N ++D  P  + +L  L  L L  N+        +++     + L+ + L H   +   
Sbjct: 74  GNKLTDIKP--LTNLKNLGWLFLDENKI------KDLSSLKDLKKLKSLSLEHNGIS--- 122

Query: 120 PRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRF 179
                  +  + ++                           QL+++          +N+ 
Sbjct: 123 ------DINGLVHLP--------------------------QLESL-------YLGNNK- 142

Query: 180 HGEISEV--LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS 237
              I+++  L     L  L+L  N ++ +I      +T L++L LS N +       L  
Sbjct: 143 ---ITDITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHI--SDLRALAG 195

Query: 238 VTALALLNLSYNRL 251
           +  L +L L     
Sbjct: 196 LKNLDVLELFSQEC 209

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.0 bits (137), Expect = 3e-09
 Identities = 36/246 (14%), Positives = 79/246 (32%), Gaps = 66/246 (26%)

Query: 10  LHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSF 69
               +  ++  I       +     +L    +   +     +   ++ +   N+ I    
Sbjct: 4   TITVSTPIK-QIFP-DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ 59

Query: 70  PCWMGSLSELKILVLRSNQFDCPPCNSNIT--FPFQALRIIDLSHTEFTGFLPRRIFPSM 127
              +  L  +  L L  N+       ++I      + L  + L   +            +
Sbjct: 60  G--IQYLPNVTKLFLNGNK------LTDIKPLTNLKNLGWLFLDENKIK---------DL 102

Query: 128 EAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEV- 186
            ++K+                             L+ +    +++    N     IS++ 
Sbjct: 103 SSLKD-----------------------------LKKL----KSLSLEHNG----ISDIN 125

Query: 187 -LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 245
            L +   L+ L L +N +T +I      +T L++L L  N++   I   L  +T L  L 
Sbjct: 126 GLVHLPQLESLYLGNNKIT-DIT-VLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLY 181

Query: 246 LSYNRL 251
           LS N +
Sbjct: 182 LSKNHI 187

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.8 bits (126), Expect = 8e-08
 Identities = 38/229 (16%), Positives = 71/229 (31%), Gaps = 42/229 (18%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
             +  +   N+ ++  +        ++  L L  NKL    P  L     L  + ++ N 
Sbjct: 43  NSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK 98

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITF--PFQALRIIDLSHTEFTGFLPRR 122
           I D     +  L +LK L L  N        S+I        L  + L + + T      
Sbjct: 99  IKDLSS--LKDLKKLKSLSLEHNGI------SDINGLVHLPQLESLYLGNNKITDITV-- 148

Query: 123 IFPSMEAMKNVDEQG-RLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHG 181
               +  +  +  +  ++             +       +LQN+         S N    
Sbjct: 149 -LSRLTKLDTLSLEDNQIS-----------DIVPLAGLTKLQNL-------YLSKNH--- 186

Query: 182 EISEV--LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 228
            IS++  L   K+L VL L              N+    ++  +   L 
Sbjct: 187 -ISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 4/93 (4%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
           T+L TL LE+N +   I    A  + L++L L  N +     R+LA    L+V+ + +  
Sbjct: 153 TKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE 208

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSN 97
             +       +L     +         P   S+
Sbjct: 209 CLNKPINHQSNLVVPNTVKNTDGSLVTPEIISD 241

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 65.7 bits (160), Expect = 4e-12
 Identities = 47/298 (15%), Positives = 96/298 (32%), Gaps = 66/298 (22%)

Query: 6   ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMI 65
            L+  H++N          ++  + +    L  +                  +N   N+ 
Sbjct: 306 SLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365

Query: 66  SDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFP 125
           +DS      +L  L+ L+L+ N        + +T    +L  +D+S              
Sbjct: 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL---------N 416

Query: 126 SMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISE 185
           S    +       +  +                              + SSN   G +  
Sbjct: 417 SHAYDRTCAWAESILVL------------------------------NLSSNMLTGSVFR 446

Query: 186 VLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP----EQLLSVTAL 241
            L     +KVL+L +N +  +IP    ++ AL+ L+++ N+L   +P    ++L S+  +
Sbjct: 447 CLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL-KSVPDGVFDRLTSLQYI 502

Query: 242 ALLN---------LSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLP 290
            L +         + Y   W            ++   + N      P + +CS  G P
Sbjct: 503 WLHDNPWDCTCPGIRYLSEWIN----------KHSGVVRNSAGSVAPDSAKCSGSGKP 550

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 61.8 bits (150), Expect = 8e-11
 Identities = 40/249 (16%), Positives = 78/249 (31%), Gaps = 7/249 (2%)

Query: 5   TELITLHLENNSLEGHIHNTFANAS-HLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
           T+L  L L             A+       LDL S  ++G    SL       V+++  +
Sbjct: 146 TKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQI-PNTTVLHLVFH 204

Query: 64  MISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRI 123
             S        S++ L  L L + + +   C   +TF  +  R    +    T       
Sbjct: 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTR--GPTLLNVTLQHIETT 262

Query: 124 FPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQN-IFVMFRAMDFSSNRFHGE 182
           +     +        +EY+     + +IT  +   +F                +  F   
Sbjct: 263 WKCSVKLFQFFWPRPVEYLN--IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFS 320

Query: 183 ISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALA 242
              +   F  + +  LS +       V   + ++   L+ + N     + +   ++  L 
Sbjct: 321 KEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQ 380

Query: 243 LLNLSYNRL 251
            L L  N L
Sbjct: 381 TLILQRNGL 389

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 54.1 bits (130), Expect = 3e-08
 Identities = 44/285 (15%), Positives = 88/285 (30%), Gaps = 31/285 (10%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSL-AKYIKLEVVNVENN 63
                L L  NS+        +  S LR L L  N++   L   +      LE ++V +N
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSHN 110

Query: 64  MISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRI 123
            +  +  C    ++ L+ L L  N FD  P           L  + LS  +F   L    
Sbjct: 111 RLQ-NISC--CPMASLRHLDLSFNDFDVLPVCKEFG-NLTKLTFLGLSAAKFRQ-LDLLP 165

Query: 124 FPSMEAM----KNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFV----------MF 169
              +         V    +           +  + +  H   L ++ V            
Sbjct: 166 VAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225

Query: 170 RAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENM-----TALESLDLSF 224
             +  +       ++ +    +   +LN++   +      S +         +E L++  
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285

Query: 225 NKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSY 269
             +  RI  +  + +  AL +L    +     +   F   +   Y
Sbjct: 286 LTITERIDREEFTYSETALKSLMIEHV-----KNQVFLFSKEALY 325

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 31/269 (11%), Positives = 71/269 (26%), Gaps = 25/269 (9%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEG-PLPRSLAKYIKLEVVNVENN 63
            +L  L + +N L+   + +    + LR LDL  N  +  P+ +      KL  + +   
Sbjct: 100 QDLEYLDVSHNRLQ---NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156

Query: 64  MI-SDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRR 122
                             +L L S         S        L ++   ++ F+  +   
Sbjct: 157 KFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMS 216

Query: 123 I--FPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDF------ 174
           +     ++           + +     + +    +     Q            F      
Sbjct: 217 VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276

Query: 175 -------SSNRFHGEISEVLGNF-----KSLKVLNLSHNSLTGNIPVSFENMTALESLDL 222
                   +      I      +     KSL + ++ +     +    +     +    L
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336

Query: 223 SFNKLDGRIPEQLLSVTALALLNLSYNRL 251
           S +           S ++   LN + N  
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVF 365

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 45/262 (17%), Positives = 80/262 (30%), Gaps = 34/262 (12%)

Query: 7   LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLE------------GPLPRSLAKYIK 54
              LHL  +           + + L  L L + KL                       + 
Sbjct: 196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT 255

Query: 55  LEVVNVENNMISDSFPC-WMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHT 113
           L+ +          F   W   +  L I  L   +       +      ++L I  + + 
Sbjct: 256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ 315

Query: 114 EFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMD 173
            F  F    ++     M             +                   +    F  ++
Sbjct: 316 VFL-FSKEALYSVFAEMNI-----------KMLSISDTPFIHMVCPPSPSS----FTFLN 359

Query: 174 FSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFE---NMTALESLDLSFNKLDGR 230
           F+ N F   + +     K L+ L L  N L  N         NM++LE+LD+S N L+  
Sbjct: 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSH 418

Query: 231 IPEQLLS-VTALALLNLSYNRL 251
             ++  +   ++ +LNLS N L
Sbjct: 419 AYDRTCAWAESILVLNLSSNML 440

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 65.4 bits (159), Expect = 5e-12
 Identities = 45/252 (17%), Positives = 79/252 (31%), Gaps = 73/252 (28%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
            +   L L   +L   + +       +  L++  N L   LP   A    LE ++  +N 
Sbjct: 59  NQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPAS---LEYLDACDNR 111

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDC-PPCNSNITFPFQALRIIDLSHTEFTGFLPRRI 123
           +S + P    SL  L    + +NQ    P   +        L  I+  + + T  LP   
Sbjct: 112 LS-TLPELPASLKHLD---VDNNQLTMLPELPAL-------LEYINADNNQLT-MLPELP 159

Query: 124 FPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEI 183
                          LE +                                 +N+    +
Sbjct: 160 -------------TSLEVL------------------------------SVRNNQL-TFL 175

Query: 184 SEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALES----LDLSFNKLDGRIPEQLLSVT 239
            E+  +   L+ L++S N L  ++P         E          N++   IPE +LS+ 
Sbjct: 176 PELPES---LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI-THIPENILSLD 230

Query: 240 ALALLNLSYNRL 251
               + L  N L
Sbjct: 231 PTCTIILEDNPL 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 60.0 bits (145), Expect = 4e-10
 Identities = 44/251 (17%), Positives = 80/251 (31%), Gaps = 72/251 (28%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
            +        N     +     N      L L    L   LP +L    ++ V+ +  N 
Sbjct: 37  EKQALPGENRNEAVSLLKECLIN--QFSELQLNRLNLSS-LPDNLPP--QITVLEITQNA 91

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           +  S P      + L+ L    N+    P          +L+ +D+ + + T  LP    
Sbjct: 92  LI-SLPE---LPASLEYLDACDNRLSTLPEL------PASLKHLDVDNNQLT-MLPELP- 139

Query: 125 PSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEIS 184
                         LEY+                              +  +N+    + 
Sbjct: 140 ------------ALLEYI------------------------------NADNNQLT-MLP 156

Query: 185 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTAL--- 241
           E+  +   L+VL++ +N LT  +P   E   +LE+LD+S N L+  +P   +        
Sbjct: 157 ELPTS---LEVLSVRNNQLTF-LP---ELPESLEALDVSTNLLE-SLPAVPVRNHHSEET 208

Query: 242 -ALLNLSYNRL 251
                   NR+
Sbjct: 209 EIFFRCRENRI 219

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 57.7 bits (139), Expect = 2e-09
 Identities = 48/271 (17%), Positives = 90/271 (33%), Gaps = 68/271 (25%)

Query: 2   SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVE 61
           +   ++  L +  N+L   +    A+   L  LD   N+L   LP   A    L+ ++V+
Sbjct: 77  NLPPQITVLEITQNALI-SLPELPAS---LEYLDACDNRLST-LPELPA---SLKHLDVD 128

Query: 62  NNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPR 121
           NN ++   P      + L+ +   +NQ    P     T    +L ++ + + + T FLP 
Sbjct: 129 NNQLT-MLP---ELPALLEYINADNNQLTMLP--ELPT----SLEVLSVRNNQLT-FLP- 176

Query: 122 RIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHG 181
                 E  ++                             L+ + V       S+N    
Sbjct: 177 ------ELPES-----------------------------LEALDV-------STNLLE- 193

Query: 182 EISEVLGNFKSLK----VLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS 237
            +  V       +          N +T +IP +  ++    ++ L  N L  RI E L  
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252

Query: 238 VTALALLNLSYNRLWGRIPRGNQFNTFQNDS 268
            TA    +           + N  +    D+
Sbjct: 253 QTAQPDYHGPRIYFSMSDGQQNTLHRPLADA 283

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.0 bits (119), Expect = 6e-07
 Identities = 36/197 (18%), Positives = 68/197 (34%), Gaps = 44/197 (22%)

Query: 59  NVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFP----FQALRIIDLSHTE 114
           N   N IS ++  +  +  + +   L          N  ++            + L+   
Sbjct: 16  NSFYNTISGTYADYFSAWDKWEKQALPGENR-----NEAVSLLKECLINQFSELQLNRLN 70

Query: 115 FTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDF 174
            +  LP  + P +  +        +         E            L+        +D 
Sbjct: 71  LS-SLPDNLPPQITVL-------EITQNALISLPELPA--------SLEY-------LDA 107

Query: 175 SSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQ 234
             NR    +S +     SLK L++ +N LT  +P   E    LE ++   N+L   +PE 
Sbjct: 108 CDNR----LSTLPELPASLKHLDVDNNQLT-MLP---ELPALLEYINADNNQL-TMLPEL 158

Query: 235 LLSVTALALLNLSYNRL 251
               T+L +L++  N+L
Sbjct: 159 P---TSLEVLSVRNNQL 172

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.0 bits (151), Expect = 4e-11
 Identities = 34/249 (13%), Positives = 87/249 (34%), Gaps = 62/249 (24%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
              I +    +++   +  T A+   + +L  +   +       +     L  + +++N 
Sbjct: 19  ANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQ 74

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           I+D  P    +L+++  L L  N        + +     +++ +DL+ T+ T        
Sbjct: 75  ITDLAPL--KNLTKITELELSGNPLKNVSAIAGLQ----SIKTLDLTSTQITDV------ 122

Query: 125 PSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEIS 184
             +  + N+                                      +    N+    I+
Sbjct: 123 TPLAGLSNLQV------------------------------------LYLDLNQ----IT 142

Query: 185 EV--LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALA 242
            +  L    +L+ L++ +  ++ ++     N++ L +L    NK+   I   L S+  L 
Sbjct: 143 NISPLAGLTNLQYLSIGNAQVS-DLT-PLANLSKLTTLKADDNKISD-ISP-LASLPNLI 198

Query: 243 LLNLSYNRL 251
            ++L  N++
Sbjct: 199 EVHLKNNQI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 35/243 (14%), Positives = 87/243 (35%), Gaps = 60/243 (24%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
             LI L L++N +   +     N + +  L+L  N L+      +A    ++ +++ +  
Sbjct: 63  NNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQ 118

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           I+D  P  +  LS L++L L  NQ       + +T     L+ + + + + +        
Sbjct: 119 ITDVTP--LAGLSNLQVLYLDLNQITNISPLAGLT----NLQYLSIGNAQVS-------- 164

Query: 125 PSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEIS 184
             +  + N                             L  +      +    N+    IS
Sbjct: 165 -DLTPLAN-----------------------------LSKL----TTLKADDNK----IS 186

Query: 185 EV--LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALA 242
           ++  L +  +L  ++L +N ++ ++     N + L  + L+   +  +      ++    
Sbjct: 187 DISPLASLPNLIEVHLKNNQIS-DVS-PLANTSNLFIVTLTNQTITNQPVFYNNNLVVPN 244

Query: 243 LLN 245
           ++ 
Sbjct: 245 VVK 247

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 34/226 (15%), Positives = 76/226 (33%), Gaps = 56/226 (24%)

Query: 26  ANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85
              ++   +    + +   +    A    +  ++     ++      +  L+ L  L L+
Sbjct: 16  PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELK 71

Query: 86  SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRA 145
            NQ        N+T     +  ++LS              ++ A+               
Sbjct: 72  DNQITDLAPLKNLT----KITELELSGNPLK---------NVSAIAG------------- 105

Query: 146 FCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTG 205
                           LQ+I    + +D +S +   +++  L    +L+VL L  N +T 
Sbjct: 106 ----------------LQSI----KTLDLTSTQIT-DVTP-LAGLSNLQVLYLDLNQIT- 142

Query: 206 NIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 251
           NI      +T L+ L +   ++    P  L +++ L  L    N++
Sbjct: 143 NIS-PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 8/65 (12%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 187 LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL 246
                +   +    +++T    V+  ++  + +L      +     E +  +  L  L L
Sbjct: 15  DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLEL 70

Query: 247 SYNRL 251
             N++
Sbjct: 71  KDNQI 75

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 14/79 (17%), Positives = 35/79 (44%), Gaps = 6/79 (7%)

Query: 173 DFSSNRFHGEISEV--LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGR 230
             ++       +    +    +L+ L +    +T +   +   +T+L  LD+S +  D  
Sbjct: 72  TINNIH----ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS 127

Query: 231 IPEQLLSVTALALLNLSYN 249
           I  ++ ++  +  ++LSYN
Sbjct: 128 ILTKINTLPKVNSIDLSYN 146

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.9 bits (138), Expect = 6e-10
 Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 1/79 (1%)

Query: 173 DFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 232
                    +    L    SL +L++SH++   +I      +  + S+DLS+N     I 
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI- 152

Query: 233 EQLLSVTALALLNLSYNRL 251
             L ++  L  LN+ ++ +
Sbjct: 153 MPLKTLPELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 36/228 (15%), Positives = 68/228 (29%), Gaps = 62/228 (27%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNK---LEGPLPRSLAKYIKLEVVNVE 61
              +   L  +S       T A  + L  + L +     L G     +     ++ + + 
Sbjct: 23  KAYLNGLLGQSSTAN---ITEAQMNSLTYITLANINVTDLTG-----IEYAHNIKDLTIN 74

Query: 62  NNMISDSFPCWMGSLSELKILVLRSNQF--DCPPCNSNITFPFQALRIIDLSHTEFTGFL 119
           N   ++  P  +  LS L+ L +       D  P  S +T    +L ++D+SH+      
Sbjct: 75  NIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLT----SLTLLDISHSAHDD-- 126

Query: 120 PRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRF 179
              I   +  +                               + +I       D S N  
Sbjct: 127 --SILTKINTLPK-----------------------------VNSI-------DLSYNGA 148

Query: 180 HGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 227
             +I   L     LK LN+  + +  +     E+   L  L      +
Sbjct: 149 ITDIMP-LKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 187 LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL 246
           +    ++K L +++   T   P     ++ LE L +    +       L  +T+L LL++
Sbjct: 62  IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 247 SYNRL 251
           S++  
Sbjct: 120 SHSAH 124

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 8/64 (12%), Positives = 24/64 (37%), Gaps = 4/64 (6%)

Query: 188 GNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLS 247
               SL  + L++ ++T ++    E    ++ L ++           +  ++ L  L + 
Sbjct: 41  AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHA--TNYNPISGLSNLERLRIM 96

Query: 248 YNRL 251
              +
Sbjct: 97  GKDV 100

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.1 bits (141), Expect = 7e-10
 Identities = 37/254 (14%), Positives = 84/254 (33%), Gaps = 72/254 (28%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNK---LEGPLPRSLAKYIKLEVVNVE 61
            E I  +L+  S+   +  T    + +  +   ++    ++G     +     +  + + 
Sbjct: 24  AETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG-----IQYLPNVTKLFLN 76

Query: 62  NNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITF--PFQALRIIDLSHTEFTGFL 119
            N ++D  P  + +L  L  L L  N+        +++     + L+ + L H   +   
Sbjct: 77  GNKLTDIKP--LANLKNLGWLFLDENKV------KDLSSLKDLKKLKSLSLEHNGIS--- 125

Query: 120 PRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRF 179
                  +  + +                             L  +     ++   +N+ 
Sbjct: 126 ------DINGLVH-----------------------------LPQL----ESLYLGNNK- 145

Query: 180 HGEIS--EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS 237
              I+   VL     L  L+L  N ++ +I      +T L++L LS N +   +   L  
Sbjct: 146 ---ITDITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS-DLRA-LAG 198

Query: 238 VTALALLNLSYNRL 251
           +  L +L L     
Sbjct: 199 LKNLDVLELFSQEC 212

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 39/255 (15%), Positives = 83/255 (32%), Gaps = 69/255 (27%)

Query: 1   GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNV 60
           G   +E IT       ++  I +     +     +L    +   +     +   ++ +  
Sbjct: 1   GPLGSETIT---VPTPIK-QIFS-DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIA 53

Query: 61  ENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITF--PFQALRIIDLSHTEFTGF 118
            N+ I       +  L  +  L L  N+       ++I      + L  + L   +    
Sbjct: 54  NNSDIKSVQG--IQYLPNVTKLFLNGNK------LTDIKPLANLKNLGWLFLDENKVK-- 103

Query: 119 LPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNR 178
                   + ++K+                             L+ +    +++    N 
Sbjct: 104 -------DLSSLKD-----------------------------LKKL----KSLSLEHNG 123

Query: 179 FHGEISEV--LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLL 236
               IS++  L +   L+ L L +N +T +I      +T L++L L  N++       L 
Sbjct: 124 ----ISDINGLVHLPQLESLYLGNNKIT-DIT-VLSRLTKLDTLSLEDNQI--SDIVPLA 175

Query: 237 SVTALALLNLSYNRL 251
            +T L  L LS N +
Sbjct: 176 GLTKLQNLYLSKNHI 190

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 47/250 (18%), Positives = 81/250 (32%), Gaps = 60/250 (24%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
             +  L L  N L   I    AN  +L  L L  NK++      L    KL+ +++E+N 
Sbjct: 68  PNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNG 123

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           ISD     +  L +L+ L L +N+       S +T     L  + L   + +        
Sbjct: 124 ISDING--LVHLPQLESLYLGNNKITDITVLSRLT----KLDTLSLEDNQIS-------- 169

Query: 125 PSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEIS 184
             +  +  +                           +LQN+         S N     IS
Sbjct: 170 -DIVPLAGLT--------------------------KLQNL-------YLSKNH----IS 191

Query: 185 EV--LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALA 242
           ++  L   K+L VL L              N+    ++  +   L    PE +       
Sbjct: 192 DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYE 249

Query: 243 LLNLSYNRLW 252
             N+ ++   
Sbjct: 250 KPNVKWHLPE 259

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.9 bits (134), Expect = 7e-09
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 173 DFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDG-RI 231
           D S NR    +   L   + L+VL  S N+L  N+     N+  L+ L L  N+L     
Sbjct: 469 DLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAA 525

Query: 232 PEQLLSVTALALLNLSYNRL 251
            + L+S   L LLNL  N L
Sbjct: 526 IQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
             +  L L +N L   +    A    L  L    N LE  +   +A   +L+ + + NN 
Sbjct: 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR 519

Query: 65  ISD-SFPCWMGSLSELKILVLRSNQFDCPP 93
           +   +    + S   L +L L+ N      
Sbjct: 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 6/99 (6%)

Query: 163 QNIFVMFRAMDFSSNRFHG-EISEVLGNFKSLKVLNLSHNSLTGNIPV-SFENMTALESL 220
           Q++      +D S N               +L  L LSHN L   I   +F  +  L  L
Sbjct: 35  QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYL 93

Query: 221 DLSFNKLDGRIPEQLLS-VTALALLNLSYNRLWGRIPRG 258
           DLS N L   + E L S + AL +L L  N +   + R 
Sbjct: 94  DLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRN 130

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.3 bits (128), Expect = 4e-08
 Identities = 36/134 (26%), Positives = 52/134 (38%), Gaps = 12/134 (8%)

Query: 5   TELITLHLENNSLEGHIH-NTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
           T L +L L +N L   I    F    +LR LDL SN L        +    LEV+ + NN
Sbjct: 64  TNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122

Query: 64  MIS----DSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPF-QALRIIDLSHTEFTGF 118
            I     ++F      +++L+ L L  NQ    P            L ++DLS  +    
Sbjct: 123 HIVVVDRNAFE----DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-K 177

Query: 119 LPRRIFPSMEAMKN 132
           LP      + A   
Sbjct: 178 LPLTDLQKLPAWVK 191

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.5 bits (126), Expect = 6e-08
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 184 SEVLGNFKSLKVLNLSHNSLTGNIPV-SFENMTALESLDLSFNKLDGRIPEQLLS-VTAL 241
           SE      +L+ L+LS N L   +    F ++ ALE L L  N +   +       +  L
Sbjct: 81  SEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQL 138

Query: 242 ALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRL 275
             L LS N++  R P        ++ + +  + L
Sbjct: 139 QKLYLSQNQI-SRFPVE----LIKDGNKLPKLML 167

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 173 DFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPV-SFENMTALESLDLSFNKLDGRI 231
           D SSN  H     +  + ++L+VL L +N +   +   +FE+M  L+ L LS N++  R 
Sbjct: 94  DLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RF 151

Query: 232 PEQ----LLSVTALALLNLSYNRLWGRIPRG 258
           P +       +  L LL+LS N+L  ++P  
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKL-KKLPLT 181

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 25/136 (18%), Positives = 46/136 (33%), Gaps = 14/136 (10%)

Query: 3   FSTELITLHLENNSLEG-HIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVE 61
             +    L L +N+L       T    ++L SL L  N L      +      L  +++ 
Sbjct: 37  LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96

Query: 62  NNMI----SDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPF-QALRIIDLSHTEFT 116
           +N +       F      L  L++L+L +N       N    F     L+ + LS  + +
Sbjct: 97  SNHLHTLDEFLFS----DLQALEVLLLYNNHIVVVDRN---AFEDMAQLQKLYLSQNQIS 149

Query: 117 GFLPRRIFPSMEAMKN 132
              P  +      +  
Sbjct: 150 -RFPVELIKDGNKLPK 164

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 163 QNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDL 222
            ++      +  S N  +      L  +  L  LNL    LT  + V    +  L +LDL
Sbjct: 27  PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDL 84

Query: 223 SFNKLDGRIPEQLLSVTALALLNLSYNRL 251
           S N+L   +P    ++ AL +L++S+NRL
Sbjct: 85  SHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.0 bits (125), Expect = 8e-08
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 185 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLL-SVTALAL 243
           +V G    L  L+LSHN L  ++P+  + + AL  LD+SFN+L   +P   L  +  L  
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQE 128

Query: 244 LNLSYNRL 251
           L L  N L
Sbjct: 129 LYLKGNEL 136

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 51/301 (16%), Positives = 96/301 (31%), Gaps = 65/301 (21%)

Query: 4   STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
               + ++ +  +L     +   +      L L  N L      +L  Y +L  +N++  
Sbjct: 9   VASHLEVNCDKRNLTALPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 64  MISDSFPCWMGSLSELKILVLRSNQF-DCPPCNSNITFPFQALRIIDLSHTEFTGFLPRR 122
            ++       G+L  L  L L  NQ    P     +     AL ++D+S    T  LP  
Sbjct: 66  ELT-KLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLT-SLPLG 118

Query: 123 IFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGE 182
               +  ++ +  +G                       +L+ +                 
Sbjct: 119 ALRGLGELQELYLKGN----------------------ELKTL----------------- 139

Query: 183 ISEVLGNFKSLKVLNLSHNSLTGNIPVS-FENMTALESLDLSFNKLDGRIPEQLLSVTAL 241
              +L     L+ L+L++N+LT  +P      +  L++L L  N L   IP+       L
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197

Query: 242 ALLNLSYN---------RLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSNDGLPKA 292
               L  N              + + N  N +     +    +     +V+C N    K 
Sbjct: 198 PFAFLHGNPWLCNCEILYFRRWL-QDNAENVYVWKQGVDVKAMTSNVASVQCDNSD--KF 254

Query: 293 P 293
           P
Sbjct: 255 P 255

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 44/240 (18%), Positives = 76/240 (31%), Gaps = 59/240 (24%)

Query: 24  TFANASHLRSLDLYSNKLEG-P--LPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELK 80
             +  +    ++     L   P  LP+         ++++  N++       +   + L 
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPKDT------TILHLSENLLYTFSLATLMPYTRLT 58

Query: 81  ILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE 140
            L L   +      +  +      L  +DLSH +    LP  +  ++           L 
Sbjct: 59  QLNLDRAELTKLQVDGTLP----VLGTLDLSHNQLQS-LPL-LGQTL---------PALT 103

Query: 141 YMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSH 200
            +  +F              +L ++               G     LG    L+ L L  
Sbjct: 104 VLDVSFN-------------RLTSL---------PLGALRG-----LGE---LQELYLKG 133

Query: 201 NSLTGNIPVS-FENMTALESLDLSFNKLDGRIPEQLL-SVTALALLNLSYNRLWGRIPRG 258
           N L   +P         LE L L+ N L   +P  LL  +  L  L L  N L   IP+G
Sbjct: 134 NELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL-YTIPKG 190

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 54/280 (19%), Positives = 96/280 (34%), Gaps = 42/280 (15%)

Query: 4   STELITLHLENNSL--EG--HIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIK----- 54
              L  L LE  SL       + +        + L + +N +     R L + +K     
Sbjct: 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ 200

Query: 55  LEVVNVENNMISD----SFPCWMGSLSELKILVLRSNQFDCPPCNS---NITFPFQALRI 107
           LE + +E+  ++          + S + L+ L L SN+            +  P   LR 
Sbjct: 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260

Query: 108 IDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDE---SITVAMKGHDFQLQN 164
           + +     T      +   + A +++ E   L   G    DE    +   +     QL++
Sbjct: 261 LWIWECGITAKGCGDLCRVLRAKESLKE---LSLAGNELGDEGARLLCETLLEPGCQLES 317

Query: 165 IFVMFRAMDFSSNRFHGE----ISEVLGNFKSLKVLNLSHNSLT--GNIPVSF---ENMT 215
           +          S  F        S VL   + L  L +S+N L   G   +     +  +
Sbjct: 318 L-------WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS 370

Query: 216 ALESLDLSFNKLD----GRIPEQLLSVTALALLNLSYNRL 251
            L  L L+   +       +   LL+  +L  L+LS N L
Sbjct: 371 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 44/272 (16%), Positives = 85/272 (31%), Gaps = 79/272 (29%)

Query: 2   SFSTELITLHLENNSL--EG--HIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYI---- 53
           + S ++  L L+N  L   G   + +T      L+ L L  N L     + L + +    
Sbjct: 82  TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ 141

Query: 54  -KLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSH 112
            +LE + +E   +S +       L+     VLR+                   + + +S+
Sbjct: 142 CRLEKLQLEYCSLSAAS---CEPLAS----VLRAKP---------------DFKELTVSN 179

Query: 113 TEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAM 172
            +                         E   R  C       +K    QL+ +       
Sbjct: 180 NDIN-----------------------EAGVRVLCQ-----GLKDSPCQLEAL------- 204

Query: 173 DFSSNRFHGE----ISEVLGNFKSLKVLNLSHNSLTGN-----IPVSFENMTALESLDLS 223
              S     +    +  ++ +  SL+ L L  N L         P      + L +L + 
Sbjct: 205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 264

Query: 224 FNKLDGR----IPEQLLSVTALALLNLSYNRL 251
              +  +    +   L +  +L  L+L+ N L
Sbjct: 265 ECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 38/238 (15%), Positives = 73/238 (30%), Gaps = 73/238 (30%)

Query: 29  SHLRSLDLYSNKLEGPLPRSLAKYIK-LEVVNVENNMISDSFPCWMGSLSELKILVLRSN 87
             ++SLD+   +L       L   ++  +VV +++  ++++       +S      LR N
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEAR---CKDISS----ALRVN 55

Query: 88  QFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFC 147
                           AL  ++L   E               +                 
Sbjct: 56  P---------------ALAELNLRSNELGD----------VGVH---------------- 74

Query: 148 DESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGE----ISEVLGNFKSLKVLNLSHNSL 203
              +   ++    ++Q +          +    G     +S  L    +L+ L+LS N L
Sbjct: 75  --CVLQGLQTPSCKIQKL-------SLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 125

Query: 204 TGNIPVSF------ENMTALESLDLSFNKLDGRIPEQLLSV----TALALLNLSYNRL 251
            G+  +        +    LE L L +  L     E L SV         L +S N +
Sbjct: 126 -GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 43/288 (14%), Positives = 93/288 (32%), Gaps = 61/288 (21%)

Query: 4   STELITLHLENNSL-EGHIHNTFANASHLRSLDLYSNKL--EG--PLPRSLAKYIKLEVV 58
           S ++ +L ++   L +             + + L    L       +  +L     L  +
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 59  NVENNMISDSFPCWMGSLSE--------LKILVLRSNQFDCPPC-------NSNITFPFQ 103
           N+ +N + D     +  + +        ++ L L++       C        +  T    
Sbjct: 62  NLRSNELGDVG---VHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPT---- 114

Query: 104 ALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQ 163
            L+ + LS         + +    E + +   Q RLE +   +C  S++          +
Sbjct: 115 -LQELHLSDNLLGDAGLQLLC---EGLLDP--QCRLEKLQLEYC--SLS------AASCE 160

Query: 164 NIFVMFRAM------DFSSNRFHGE----ISEVLGNFK-SLKVLNLSHNSLT----GNIP 208
            +  + RA         S+N  +      + + L +    L+ L L    +T     ++ 
Sbjct: 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220

Query: 209 VSFENMTALESLDLSFNKLDGR----IPEQLLSV-TALALLNLSYNRL 251
               +  +L  L L  NKL       +   LL   + L  L +    +
Sbjct: 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 181 GEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA 240
           G++  +   F+ L+ L+  +  LT +I      +  L+ L+LS N++ G +         
Sbjct: 32  GKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89

Query: 241 LALLNLSYNRL 251
           L  LNLS N++
Sbjct: 90  LTHLNLSGNKI 100

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 185 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL-DGRIPEQLLSVTALAL 243
             L     LK L LS N ++G + V  E    L  L+LS NK+ D    E L  +  L  
Sbjct: 58  ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117

Query: 244 LNLSYN 249
           L+L   
Sbjct: 118 LDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 9/89 (10%)

Query: 6   ELITLHLENNSL-EGHIHNTFANASHLRSLDLYSN---KLEGPLPRSLAKYIKLEVVNVE 61
           ++  L L+N+   EG +         L  L   +     +       L K  KL+ + + 
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-----LPKLNKLKKLELS 72

Query: 62  NNMISDSFPCWMGSLSELKILVLRSNQFD 90
           +N +S            L  L L  N+  
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 40/285 (14%), Positives = 78/285 (27%), Gaps = 74/285 (25%)

Query: 7   LITLHLENNSL--EG--HIHNTFANASHLRSLDLYSNKL--EG--PLPRSLAKYIKLEVV 58
           +    L+ +++  E    +         ++ + L  N +  E    L  ++A    LE+ 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 59  NVENNMIS---DSFPCWMGSLSE-------LKILVLRSNQF---------DCPPCNSNIT 99
              +       D  P  +  L +       L  + L  N F         D    ++   
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP-- 123

Query: 100 FPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHD 159
                L  + L +                       Q     + RA  + ++    K   
Sbjct: 124 -----LEHLYLHNNGLG------------------PQA-GAKIARALQELAVNKKAKNAP 159

Query: 160 FQLQNIFVMFRAMDFSSNRFHGE----ISEVLGNFKSLKVLNLSHNSLT-----GNIPVS 210
             L++I           NR         ++   + + L  + +  N +        +   
Sbjct: 160 -PLRSI-------ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG 211

Query: 211 FENMTALESLDLSFNKLDGR----IPEQLLSVTALALLNLSYNRL 251
                 L+ LDL  N         +   L S   L  L L+   L
Sbjct: 212 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 45/294 (15%), Positives = 94/294 (31%), Gaps = 57/294 (19%)

Query: 5   TELITLHLENNSL--EG--HIHNTFANASHLRSLDLYSNKL-----EGP-----LPRSLA 50
             +  + L  N++  E    +    A+   L   +           E P     L ++L 
Sbjct: 32  DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL 91

Query: 51  KYIKLEVVNVENNMISDSFPCWMGSL----SELKILVLRSNQFD-----------CPPCN 95
           K  KL  V + +N    +    +       + L+ L L +N                   
Sbjct: 92  KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV 151

Query: 96  SNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEY--MGRAFCDESITV 153
           +        LR I            +    + ++ + +    ++    +     +  +  
Sbjct: 152 NKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL-HTVKMVQNGIRPEGIEHLLLE 210

Query: 154 AMKGHDFQLQNIFVMFRAMDFSSNRFHGE----ISEVLGNFKSLKVLNLSHNSLT--GNI 207
            +     +L+ +       D   N F       ++  L ++ +L+ L L+   L+  G  
Sbjct: 211 GLAYCQ-ELKVL-------DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262

Query: 208 PVS-----FENMTALESLDLSFNKLDGRIPEQLLSV-----TALALLNLSYNRL 251
            V       EN+  L++L L +N+++      L +V       L  L L+ NR 
Sbjct: 263 AVVDAFSKLENIG-LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 35/271 (12%), Positives = 77/271 (28%), Gaps = 79/271 (29%)

Query: 5   TELITLHLENNSL--EG--HIHNTFANASHLRSLDLYSNKL-------------EGPLPR 47
            +L T+ L +N+        + +  +  + L  L L++N L             E  + +
Sbjct: 94  PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNK 153

Query: 48  SLAKYIKLEVVNVENNMISDSFPCWMGSLSE-------LKILVLRSNQFDCPPCNSNITF 100
                  L  +    N + +     M   ++       L  + +  N          +  
Sbjct: 154 KAKNAPPLRSIICGRNRLENG---SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE 210

Query: 101 PFQA---LRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKG 157
                  L+++DL    FT                    G       A        A+K 
Sbjct: 211 GLAYCQELKVLDLQDNTFT------------------HLG-----SSALAI-----ALKS 242

Query: 158 HDFQLQNIFVMFRAMDFSSNRFHGE----ISEVL--GNFKSLKVLNLSHNSLTGNIPVSF 211
               L+ +         +           + +         L+ L L +N +  +   + 
Sbjct: 243 WP-NLREL-------GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294

Query: 212 -----ENMTALESLDLSFNKL--DGRIPEQL 235
                E M  L  L+L+ N+   +  + +++
Sbjct: 295 KTVIDEKMPDLLFLELNGNRFSEEDDVVDEI 325

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 37/291 (12%), Positives = 96/291 (32%), Gaps = 54/291 (18%)

Query: 2   SFSTELITLHLENNSL--EG--HIHNTFA-NASHLRSLDLYSNKLEGPLPRSLAKYIK-- 54
           S    + +L L  N+L       +   FA   + + SL+L  N L       L + +   
Sbjct: 19  SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78

Query: 55  ---LEVVNVENNMISDSFPCWMGSL-----SELKILVLRSNQFDCPPCN---SNITFPFQ 103
              +  +N+  N +S      +          + +L L  N F     +      +    
Sbjct: 79  PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138

Query: 104 ALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEY-------MGRAFCDESITVAMK 156
           ++  ++L   +        +   ++ +  +     +         +    C   +   + 
Sbjct: 139 SITSLNLRGNDLGIKSSDEL---IQILAAI--PANVNSLNLRGNNLASKNC-AELAKFLA 192

Query: 157 GHDFQLQNIFVMFRAMDFSSNRFHGE----ISEVL-GNFKSLKVLNLSHNSLTG----NI 207
                + ++       D S+N    +    ++ +       +  LNL  N L G    N+
Sbjct: 193 SIPASVTSL-------DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL 245

Query: 208 PVSFENMTALESLDLSFNKLDGRIPEQLLSV-------TALALLNLSYNRL 251
            +  +++  L+++ L ++ +     EQ  ++         + L++ +   +
Sbjct: 246 KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 10/79 (12%)

Query: 183 ISEVLGNFKSLKVLNLSHNSLT--GNIPVSF---ENMTALESLDLSFNKLDGRIPEQLLS 237
           + E       +  L+LS N+L     + +         ++ SL+LS N L  +  ++L+ 
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 238 V-----TALALLNLSYNRL 251
           +       +  LNLS N L
Sbjct: 74  ILAAIPANVTSLNLSGNFL 92

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 39/259 (15%), Positives = 81/259 (31%), Gaps = 78/259 (30%)

Query: 2   SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVE 61
           S      TL L    L     + F+N  ++  + +  +             + L+ +   
Sbjct: 28  SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID-------------VTLQQLE-- 72

Query: 62  NNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITF-------PFQALRIIDLSHTE 114
               S SF     +LS++  + +R+ +        N+T+           L+ + + +T 
Sbjct: 73  ----SHSF----YNLSKVTHIEIRNTR--------NLTYIDPDALKELPLLKFLGIFNTG 116

Query: 115 FTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDF 174
              F       S +    ++                           + +I         
Sbjct: 117 LKMFPDLTKVYSTDIFFILEITDNP---------------------YMTSI--------- 146

Query: 175 SSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQ 234
             N F G  +E          L L +N  T ++     N T L+++ L+ NK    I + 
Sbjct: 147 PVNAFQGLCNE-------TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKD 198

Query: 235 LLS--VTALALLNLSYNRL 251
                 +  +LL++S   +
Sbjct: 199 AFGGVYSGPSLLDVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 12/96 (12%), Positives = 29/96 (30%), Gaps = 3/96 (3%)

Query: 173 DFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPV-SFENMTALESLDLSFNKLDGRI 231
                      S    N  ++  + +S +     +   SF N++ +  +++   +    I
Sbjct: 37  KLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96

Query: 232 PEQLLS-VTALALLNLSYNRLWGRIPRGNQFNTFQN 266
               L  +  L  L +    L    P   +  +   
Sbjct: 97  DPDALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDI 131

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 7/77 (9%)

Query: 192 SLKVLNLSHNSLTGNIPV-SFENMTALESLDLSFNKLDGRIPEQLLS-VTALALLNLSYN 249
           S + L L    L   IP  +F N+  +  + +S +    ++       ++ +  + +   
Sbjct: 32  STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 250 RLWGRIPRGNQFNTFQN 266
           R    I         + 
Sbjct: 91  RNLTYIDPD----ALKE 103

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 4/73 (5%)

Query: 189 NFKSLKVLNLSHNSLTGNIPVS-FENMTALESLDLSFNKLDGRIPEQ--LLSVTALALLN 245
           N   +  + + +      I     + +  L+ L +    L    P+   + S     +L 
Sbjct: 78  NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILE 136

Query: 246 LSYNRLWGRIPRG 258
           ++ N     IP  
Sbjct: 137 ITDNPYMTSIPVN 149

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 13/79 (16%), Positives = 21/79 (26%), Gaps = 6/79 (7%)

Query: 184 SEVLGNFKSLKVLNLSHNSLTGNIP--VSFENMTALESLDLSFNKLDGRIPEQLLS--VT 239
            + L     LK L + +  L    P      +      L+++ N     IP         
Sbjct: 98  PDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCN 156

Query: 240 ALALLNLSYNRLWGRIPRG 258
               L L  N     +   
Sbjct: 157 ETLTLKLYNNGFT-SVQGY 174

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 3e-07
 Identities = 57/353 (16%), Positives = 98/353 (27%), Gaps = 95/353 (26%)

Query: 4   STELITLHLENNSLEGHI-HNTFANASHLRSLDLYSNKLEGPLPRSLA--KYIK-LEVV- 58
           S E +   L+   L   I  N  + + H  ++ L  + ++  L R L    Y   L V+ 
Sbjct: 194 SPETVLEMLQK--LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 59  NVENNMISDSF--PCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFT 116
           NV+N    ++F   C        KIL+               T      R      T+F 
Sbjct: 252 NVQNAKAWNAFNLSC--------KILL--------------TT------R--FKQVTDFL 281

Query: 117 GFLPRRIFPSMEAMKNVDEQGRLEYMGRAF---CDESITVAMKGHDFQLQNIFVMFRAMD 173
                           +        + +       +     +  +  +L  I    R   
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG- 340

Query: 174 FSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALES----LDLS-FNKLD 228
                +         N+K     +++ + LT  I  S   +   E       LS F    
Sbjct: 341 --LATW--------DNWK-----HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP-S 384

Query: 229 GRIPEQLLSVTALALLNLSYNRLWGRIPRGNQF---NTFQNDSYI------GNIRLCGEP 279
             IP  LLS+            +W  + + +     N     S +        I +    
Sbjct: 385 AHIPTILLSL------------IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Query: 280 LTVRCSNDGLPKAPRLASFDHDETASRFD-WKMAKM---GYASGLVIGLSIGY 328
           L ++   +      R    DH      FD   +       Y         IG+
Sbjct: 433 LELKVKLENEYALHRSI-VDHYNIPKTFDSDDLIPPYLDQY-----FYSHIGH 479

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 9/97 (9%)

Query: 191 KSLKVLNLSHNSLTGNIPVS-FENMTALESLDLSFNKLDGRIPEQLL-SVTALALLNLSY 248
           +SL  L L  N +T  +P S FE + +L+ L L+ NK+   +       +  L LL+L  
Sbjct: 80  RSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYD 137

Query: 249 NRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCS 285
           N+L   I +G    TF     I  + L   P    C 
Sbjct: 138 NKL-QTIAKG----TFSPLRAIQTMHLAQNPFICDCH 169

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 5/88 (5%)

Query: 173 DFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPV-SFENMTALESLDLSFNKLDGRI 231
               N            +K L+ ++LS+N ++  +   +F+ + +L SL L  NK+   +
Sbjct: 38  RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-EL 95

Query: 232 PEQLL-SVTALALLNLSYNRLWGRIPRG 258
           P+ L   + +L LL L+ N++   +   
Sbjct: 96  PKSLFEGLFSLQLLLLNANKIN-CLRVD 122

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 2/93 (2%)

Query: 1   GSFS--TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVV 58
            +F     L +L L  N +     + F     L+ L L +NK+      +      L ++
Sbjct: 74  DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL 133

Query: 59  NVENNMISDSFPCWMGSLSELKILVLRSNQFDC 91
           ++ +N +          L  ++ + L  N F C
Sbjct: 134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 10/95 (10%)

Query: 1   GSFS--TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVV 58
           G+FS   +L  + L NN +     + F     L SL LY NK+             L+++
Sbjct: 50  GAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL 109

Query: 59  NVENNMIS----DSFPCWMGSLSELKILVLRSNQF 89
            +  N I+    D+F      L  L +L L  N+ 
Sbjct: 110 LLNANKINCLRVDAF----QDLHNLNLLSLYDNKL 140

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 25/127 (19%), Positives = 55/127 (43%), Gaps = 7/127 (5%)

Query: 9   TLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDS 68
            + LE N+++      F+    LR +DL +N++    P +      L  + +  N I+  
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-E 94

Query: 69  FPCWM-GSLSELKILVLRSNQFDCPPCNSNITF-PFQALRIIDLSHTEFTGFLPRRIFPS 126
            P  +   L  L++L+L +N+ +C   +    F     L ++ L   +    + +  F  
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKINCLRVD---AFQDLHNLNLLSLYDNKLQ-TIAKGTFSP 150

Query: 127 MEAMKNV 133
           + A++ +
Sbjct: 151 LRAIQTM 157

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 192 SLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLL-SVTALALLNLSYNR 250
           ++  + L  N++    P +F     L  +DLS N++   +       + +L  L L  N+
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNK 91

Query: 251 LWGRIPRG 258
           +   +P+ 
Sbjct: 92  I-TELPKS 98

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.4 bits (116), Expect = 5e-07
 Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 7/104 (6%)

Query: 183 ISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLL-SVTAL 241
           + + L N+K L +++LS+N ++     SF NMT L +L LS+N+L   IP +    + +L
Sbjct: 46  VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL-RCIPPRTFDGLKSL 104

Query: 242 ALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCS 285
            LL+L  N +   +P G     F + S + ++ +   PL   C+
Sbjct: 105 RLLSLHGNDI-SVVPEG----AFNDLSALSHLAIGANPLYCDCN 143

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
             L  + L NN +    + +F+N + L +L L  N+L    PR+      L ++++  N 
Sbjct: 54  KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND 113

Query: 65  ISDSFPCWMG---SLSELKILVLRSNQFDC 91
           IS   P   G    LS L  L + +N   C
Sbjct: 114 IS-VVP--EGAFNDLSALSHLAIGANPLYC 140

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 181 GEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA 240
           G+I  +   F +L+ L+L +  L  ++  +   +  L+ L+LS N++ G +      +  
Sbjct: 39  GKIEGLTAEFVNLEFLSLINVGLI-SVS-NLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96

Query: 241 LALLNLSYNRL 251
           L  LNLS N+L
Sbjct: 97  LTHLNLSGNKL 107

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 7/91 (7%)

Query: 162 LQNIFVMFRAMDFSSNRFHGEISEV--LGNFKSLKVLNLSHNSLTGNIPVSFENMTALES 219
           L   FV    +   +      +  V  L     LK L LS N + G + +  E +  L  
Sbjct: 44  LTAEFVNLEFLSLINV----GLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99

Query: 220 LDLSFNKL-DGRIPEQLLSVTALALLNLSYN 249
           L+LS NKL D    E L  +  L  L+L   
Sbjct: 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 9/89 (10%)

Query: 6   ELITLHLENNSL-EGHIHNTFANASHLRSLDLYSN---KLEGPLPRSLAKYIKLEVVNVE 61
            +  L L+N    +G I    A   +L  L L +     +       L K  KL+ + + 
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-----LPKLPKLKKLELS 79

Query: 62  NNMISDSFPCWMGSLSELKILVLRSNQFD 90
            N I          L  L  L L  N+  
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.4 bits (118), Expect = 6e-07
 Identities = 36/253 (14%), Positives = 73/253 (28%), Gaps = 28/253 (11%)

Query: 3   FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRS----LAKYIKLEVV 58
                I L      L       F+    L  +++  N +   +       L K  ++ + 
Sbjct: 28  LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 59  NVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGF 118
               N +    P    +L  L+ L++ +      P    I        ++D+        
Sbjct: 88  K--ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL--QKVLLDIQDNINIHT 143

Query: 119 LPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNR 178
           + R  F  +              +        I   +    F    +      ++ S N 
Sbjct: 144 IERNSFVGL--------SFESVILWLNKN--GIQ-EIHNSAFNGTQL----DELNLSDNN 188

Query: 179 FHGEISE-VLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS 237
              E+   V        +L++S   +        EN+  L +      K   ++P  L  
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLP-TLEK 244

Query: 238 VTALALLNLSYNR 250
           + AL   +L+Y  
Sbjct: 245 LVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 38/230 (16%), Positives = 73/230 (31%), Gaps = 51/230 (22%)

Query: 1   GSFS--TELITLHLEN-NSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEV 57
             FS   +L  + +E  N+L       F N  +L+ L + +  ++          ++  +
Sbjct: 73  DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL 132

Query: 58  VNVENNMISDSFP--CWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEF 115
           +++++N+   +     ++G   E  IL L  N       +    F    L  ++LS    
Sbjct: 133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS---AFNGTQLDELNLSDNNN 189

Query: 116 TGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFS 175
              LP  +F                                               +D S
Sbjct: 190 LEELPNDVFHGASGPVI---------------------------------------LDIS 210

Query: 176 SNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFN 225
             R H   S  L N K L+  +  +      +P + E + AL    L++ 
Sbjct: 211 RTRIHSLPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYP 256

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 36/247 (14%), Positives = 84/247 (34%), Gaps = 64/247 (25%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
              +  +L   S+   + +     S +++ +  ++ ++      +  +  L+ +++ +N 
Sbjct: 19  ANAVKQNLGKQSVT-DLVS-QKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQ 74

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           ISD  P  +  L++L+ L +  N+        +       L  + L + E          
Sbjct: 75  ISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSAC-----LSRLFLDNNELRD------T 121

Query: 125 PSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEIS 184
            S+  +KN                             L+ +          +N+    + 
Sbjct: 122 DSLIHLKN-----------------------------LEIL-------SIRNNK----LK 141

Query: 185 EV--LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALA 242
            +  LG    L+VL+L  N +T N       +  +  +DL+  K    + E +     L 
Sbjct: 142 SIVMLGFLSKLEVLDLHGNEIT-NTG-GLTRLKKVNWIDLTGQKC---VNEPVKYQPELY 196

Query: 243 LLNLSYN 249
           + N   +
Sbjct: 197 ITNTVKD 203

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 14/72 (19%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 182 EISEV--LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT 239
            I++V       +    NL   S+T ++ VS + ++ +++ +   + +  +    +   T
Sbjct: 8   PINQVFPDPGLANAVKQNLGKQSVT-DL-VSQKELSGVQNFNGDNSNI--QSLAGMQFFT 63

Query: 240 ALALLNLSYNRL 251
            L  L+LS+N++
Sbjct: 64  NLKELHLSHNQI 75

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 5/67 (7%)

Query: 185 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL 244
             +  F +LK L+LSHN ++ ++    +++T LE L ++ N+L   +    +    L+ L
Sbjct: 57  AGMQFFTNLKELHLSHNQIS-DLS-PLKDLTKLEELSVNRNRLK-NLNG--IPSACLSRL 111

Query: 245 NLSYNRL 251
            L  N L
Sbjct: 112 FLDNNEL 118

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 185 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL 244
           + L + K+L++L++ +N L  +I      ++ LE LDL  N++       L  +  +  +
Sbjct: 122 DSLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEI--TNTGGLTRLKKVNWI 177

Query: 245 NLSYNRL 251
           +L+  + 
Sbjct: 178 DLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 9/80 (11%)

Query: 173 DFSSNRFHGEISEVLG-NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRI 231
             + NR    +  + G     L  L L +N L  +   S  ++  LE L +  NKL   I
Sbjct: 91  SVNRNR----LKNLNGIPSACLSRLFLDNNELR-DTD-SLIHLKNLEILSIRNNKLK-SI 143

Query: 232 PEQLLSVTALALLNLSYNRL 251
              L  ++ L +L+L  N +
Sbjct: 144 -VMLGFLSKLEVLDLHGNEI 162

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.8 bits (117), Expect = 7e-07
 Identities = 42/234 (17%), Positives = 72/234 (30%), Gaps = 54/234 (23%)

Query: 1   GSFS--TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVV 58
            SF    EL  L L    ++      + + SHL +L L  N ++     + +    L+ +
Sbjct: 46  YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105

Query: 59  NVENNMISDSFPCWM-GSLSELKILVLRSNQFDCPPCNSNITFP--FQ---ALRIIDLSH 112
                 ++ S   +  G L  LK L +  N         +   P  F     L  +DLS 
Sbjct: 106 VAVETNLA-SLENFPIGHLKTLKELNVAHNLI------QSFKLPEYFSNLTNLEHLDLSS 158

Query: 113 TEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAM 172
            +    +       +  M  ++    L                      +  I       
Sbjct: 159 NKIQ-SIYCTDLRVLHQMPLLNLSLDL------------------SLNPMNFI------- 192

Query: 173 DFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPV-SFENMTALESLDLSFN 225
                 F             LK L L  N L  ++P   F+ +T+L+ + L  N
Sbjct: 193 --QPGAFKE---------IRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.1 bits (110), Expect = 5e-06
 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 10/82 (12%)

Query: 184 SEVLGNFKSLKVLNLSHNSLTGNIPVS--FENMTALESLDLSFNKLDGRIPEQ----LLS 237
           +  +G+ K+LK LN++HN +  +  +   F N+T LE LDLS NK+   I       L  
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQ 174

Query: 238 VTALAL-LNLSYNRLWGRIPRG 258
           +  L L L+LS N +   I  G
Sbjct: 175 MPLLNLSLDLSLNPM-NFIQPG 195

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 8/93 (8%)

Query: 163 QNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVS-FENMTALESLD 221
            N+    + +D S N      S    +F  L+VL+LS   +   I    +++++ L +L 
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLI 82

Query: 222 LSFNKL---DGRIPEQLLSVTALALLNLSYNRL 251
           L+ N +          L   ++L  L      L
Sbjct: 83  LTGNPIQSLALGAFSGL---SSLQKLVAVETNL 112

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 12/65 (18%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 189 NFKSLKVLNLSHNSLTGNIPV-SFENMTALESLDLSFNKLDGRIPEQLLS-VTALALLNL 246
           +   L  L L+ N +  ++ + +F  +++L+ L      L   +    +  +  L  LN+
Sbjct: 74  SLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNV 131

Query: 247 SYNRL 251
           ++N +
Sbjct: 132 AHNLI 136

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 184 SEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL-DGRIPEQLLSVTALA 242
                   SL+ L     +L         ++  L+ L+++ N +   ++PE   ++T L 
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 243 LLNLSYNRLWGRIPRG 258
            L+LS N++   I   
Sbjct: 153 HLDLSSNKIQ-SIYCT 167

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 8e-07
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 3/92 (3%)

Query: 5   TELITLHLENNSLEGHIHN-TFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
             L  L++EN     H+          LR+L +  + L    P +     +L  +N+  N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 64  MISDSFPCWMGSLSELKILVLRSNQFDCPPCN 95
            +       +  LS L+ LVL  N   C  C 
Sbjct: 91  ALESLSWKTVQGLS-LQELVLSGNPLHC-SCA 120

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 2/80 (2%)

Query: 173 DFSSNRFHGEI-SEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRI 231
              + +    +    L     L+ L +  + L    P +F     L  L+LSFN L+  +
Sbjct: 37  YIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SL 95

Query: 232 PEQLLSVTALALLNLSYNRL 251
             + +   +L  L LS N L
Sbjct: 96  SWKTVQGLSLQELVLSGNPL 115

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 10/95 (10%)

Query: 1   GSFS--TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVV 58
           G F    +L  ++  NN +       F  AS +  + L SN+LE    +       L+ +
Sbjct: 51  GIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110

Query: 59  NVENNMIS----DSFPCWMGSLSELKILVLRSNQF 89
            + +N I+    DSF      LS +++L L  NQ 
Sbjct: 111 MLRSNRITCVGNDSF----IGLSSVRLLSLYDNQI 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 173 DFSSNRFHG-EISEVLGNFKSLKVLNLSHNSLTGNIPV-SFENMTALESLDLSFNKLDGR 230
             ++N F   E + +      L+ +N S+N +T +I   +FE  + +  + L+ N+L+  
Sbjct: 38  RLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 231 IPEQLL-SVTALALLNLSYNRLWGRIPRG 258
           +  ++   + +L  L L  NR+   +   
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRIT-CVGND 123

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 26/87 (29%), Positives = 44/87 (50%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
           T+L  L L  N L+      F   + L+ L LY+N+L+     +  K  +L+ + ++NN 
Sbjct: 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDC 91
           +         SL +LK+L L+ N +DC
Sbjct: 193 LKRVPEGAFDSLEKLKMLQLQENPWDC 219

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 47/228 (20%), Positives = 77/228 (33%), Gaps = 50/228 (21%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSL-AKYIKLEVVNVENN 63
            +   L L++N L       F   + LR L L  NKL+  LP  +  +   LE + V +N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDN 95

Query: 64  MISDSFPCWM-GSLSELKILVLRSNQFDCPPCN--SNITFPFQALRIIDLSHTEFTGFLP 120
            +  + P  +   L  L  L L  NQ    P     ++T     L  + L + E    LP
Sbjct: 96  KLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT----KLTYLSLGYNELQ-SLP 149

Query: 121 RRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFH 180
           + +F  +                                  L+ + +        +N+  
Sbjct: 150 KGVFDKLT--------------------------------SLKELRL-------YNNQLK 170

Query: 181 GEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 228
                       LK L L +N L      +F+++  L+ L L  N  D
Sbjct: 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 8/92 (8%)

Query: 164 NIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVS-FENMTALESLDL 222
           NI    + +D  SN+     S+       L++L L+ N L   +P   F+ +  LE+L +
Sbjct: 34  NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV 92

Query: 223 SFNKL---DGRIPEQLLSVTALALLNLSYNRL 251
           + NKL      + +QL     LA L L  N+L
Sbjct: 93  TDNKLQALPIGVFDQL---VNLAELRLDRNQL 121

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 192 SLKVLNLSHNSLTGNIPVS-FENMTALESLDLSFNKLDGRIPEQLL-SVTALALLNLSYN 249
           +L+ L ++ N L   +P+  F+ +  L  L L  N+L   +P ++  S+T L  L+L YN
Sbjct: 86  NLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYN 143

Query: 250 RLWGRIPRG 258
            L   +P+G
Sbjct: 144 ELQ-SLPKG 151

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 192 SLKVLNLSHNSLTGNIPVS-FENMTALESLDLSFNKLDGRIPEQLL-SVTALALLNLSYN 249
           +L  L L  N L  ++P   F+++T L  L L +N+L   +P+ +   +T+L  L L  N
Sbjct: 110 NLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNN 167

Query: 250 RLWGRIPRG 258
           +L  R+P G
Sbjct: 168 QL-KRVPEG 175

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 46/220 (20%), Positives = 80/220 (36%), Gaps = 44/220 (20%)

Query: 31  LRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWM-GSLSELKILVLRSNQF 89
            + LDL SNKL     ++  +  KL ++ + +N +  + P  +   L  L+ L +  N+ 
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL 97

Query: 90  DCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDE 149
              P    +      L  + L   +    LP R+F S+  +  +     L          
Sbjct: 98  QALP--IGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLS----L---------- 140

Query: 150 SITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPV 209
                      +LQ++             F       L +   LK L L +N L      
Sbjct: 141 --------GYNELQSL---------PKGVFDK-----LTS---LKELRLYNNQLKRVPEG 175

Query: 210 SFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYN 249
           +F+ +T L++L L  N+L         S+  L +L L  N
Sbjct: 176 AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.7 bits (107), Expect = 1e-05
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 188 GNFKSLKVLNLSHNSLTGNIP---VSFENMTALESLDLSFNKLDGR----IPEQLLSVTA 240
             F +LK L +        +    +  + +  LE++D+S   L       + + +  +  
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308

Query: 241 LALLNLSYNRL 251
           L  +N+ YN L
Sbjct: 309 LKFINMKYNYL 319

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 7/91 (7%)

Query: 162 LQNIFVMFRAMDFSSNRFHGEISEV--LGNFKSLKVLNLSHNSLTGNIPVSFENMTALES 219
           L      F A+DFS N    EI ++      + LK L +++N +        + +  L  
Sbjct: 37  LGATLDQFDAIDFSDN----EIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92

Query: 220 LDLSFNKLDG-RIPEQLLSVTALALLNLSYN 249
           L L+ N L      + L S+ +L  L +  N
Sbjct: 93  LILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 3/82 (3%)

Query: 170 RAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDG 229
           R +D    +    I  +         ++ S N +   +   F  +  L++L ++ N++  
Sbjct: 22  RELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICR 78

Query: 230 RIPEQLLSVTALALLNLSYNRL 251
                  ++  L  L L+ N L
Sbjct: 79  IGEGLDQALPDLTELILTNNSL 100

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 9/89 (10%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSN---KLEGPLPRSLAKYIKLEVVNVE 61
                L L    +   I N  A      ++D   N   KL+G          +L+ + V 
Sbjct: 19  VRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDG-----FPLLRRLKTLLVN 72

Query: 62  NNMISDSFPCWMGSLSELKILVLRSNQFD 90
           NN I         +L +L  L+L +N   
Sbjct: 73  NNRICRIGEGLDQALPDLTELILTNNSLV 101

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 182 EISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTAL 241
           ++   L   K+ K L LS N++   I  S   M  L  L L  N +  +I         L
Sbjct: 39  KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTL 95

Query: 242 ALLNLSYNRL 251
             L +SYN++
Sbjct: 96  EELWISYNQI 105

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 173 DFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL-DGRI 231
               N    +I  +     +L+ L +S+N +  ++    E +  L  L +S NK+ +   
Sbjct: 76  SLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKITNWGE 132

Query: 232 PEQLLSVTALALLNLSYN 249
            ++L ++  L  L L+ N
Sbjct: 133 IDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSN---KLEGPLPRSLAKYIKLEVVNVE 61
             L  L L  N ++  I N  A A  L  L +  N    L G     + K + L V+ + 
Sbjct: 70  ENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSG-----IEKLVNLRVLYMS 123

Query: 62  NNMISD-SFPCWMGSLSELKILVLRSNQF 89
           NN I++      + +L +L+ L+L  N  
Sbjct: 124 NNKITNWGEIDKLAALDKLEDLLLAGNPL 152

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 7/101 (6%)

Query: 186 VLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLL-SVTALALL 244
           + G    L  L L  N LTG  P +FE  + ++ L L  NK+   I  ++   +  L  L
Sbjct: 49  LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI-KEISNKMFLGLHQLKTL 107

Query: 245 NLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCS 285
           NL  N++   +  G    +F++ + + ++ L   P    C 
Sbjct: 108 NLYDNQI-SCVMPG----SFEHLNSLTSLNLASNPFNCNCH 143

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
             L+ L L+ N L G   N F  ASH++ L L  NK++    +      +L+ +N+ +N 
Sbjct: 54  PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ 113

Query: 65  ISDSFPCWMG---SLSELKILVLRSNQFDC 91
           IS       G    L+ L  L L SN F+C
Sbjct: 114 IS-CVM--PGSFEHLNSLTSLNLASNPFNC 140

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 1/87 (1%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
           T+L  L L  N L       F    HL+ L +  NKL   LPR + +   L  + ++ N 
Sbjct: 88  TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQ 146

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDC 91
           +          LS L    L  N +DC
Sbjct: 147 LKSIPHGAFDRLSSLTHAYLFGNPWDC 173

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 193 LKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLW 252
           L VL+L  N LT      F+ +  L+ L +  NKL   +P  +  +T L  L L  N+L 
Sbjct: 90  LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQL- 147

Query: 253 GRIPRGNQFNTFQNDSYIGNIRLCGEP 279
             IP G     F   S + +  L G P
Sbjct: 148 KSIPHG----AFDRLSSLTHAYLFGNP 170

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSL-AKYIKLEVVNVENN 63
           T+L  L+L  N L+      F   + L+ L L +N+L+  +P     K   L+ +++  N
Sbjct: 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTN 165

Query: 64  MISDSFPCWMGSLSELKILVLRSNQFDC 91
            +          L +L+ + L  NQFDC
Sbjct: 166 QLQSVPHGAFDRLGKLQTITLFGNQFDC 193

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 9/99 (9%)

Query: 164 NIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVS-FENMTALESLDL 222
            I      +D  S                L  LNL +N L   +    F+++T L +L L
Sbjct: 32  GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGL 90

Query: 223 SFNKLD---GRIPEQLLSVTALALLNLSYNRLWGRIPRG 258
           + N+L      + + L   T L  L L  N+L   +P G
Sbjct: 91  ANNQLASLPLGVFDHL---TQLDKLYLGGNQL-KSLPSG 125

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 191 KSLKVLNLSHNSLTGNIPVS-FENMTALESLDLSFNKLDGRIPEQLL-SVTALALLNLSY 248
             L  L L++N L  ++P+  F+++T L+ L L  N+L   +P  +   +T L  L L+ 
Sbjct: 83  TELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNT 140

Query: 249 NRLWGRIPRG 258
           N+L   IP G
Sbjct: 141 NQL-QSIPAG 149

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	333
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	100.0
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.96
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.95
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.94
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.94
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.94
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.93
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.93
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.92
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.91
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.91
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.91
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.91
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.89
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.89
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.89
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.85
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.85
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.85
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.84
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.84
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.84
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.84
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.84
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.84
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.84
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.83
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.83
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.83
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.8
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.8
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.78
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.78
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.75
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.74
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.74
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.73
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.72
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.71
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.7
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.69
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.67
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.67
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.66
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.66
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.62
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.62
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.61
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.6
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.59
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.59
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.58
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.57
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.56
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.53
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.51
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.45
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.41
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.39
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.38
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.19
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.12
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.11
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.09
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.01
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.93
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.82
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.68
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.65
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.61
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.53
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.44
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.44
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.22
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.42
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.26
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.24
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.2
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	83.46

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.9e-39  Score=312.53  Aligned_cols=284  Identities=31%  Similarity=0.475  Sum_probs=209.0

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      +|++|++++|.+++..|..|.++++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus       419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~  498 (768)
T 3rgz_A          419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS  498 (768)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEcc
Confidence            56666666666666666666666666666666666666666666666677777777777766666667777777777777


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc--ccccccccCc------------e
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE--YMGRAFCDES------------I  151 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~--~~~~~~~~~~------------~  151 (333)
                      +|++++..|.++  ..+++|++|++++|.+++.+|.. +..+++|+.+++.+|.-  .++...+...            .
T Consensus       499 ~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~  575 (768)
T 3rgz_A          499 NNRLTGEIPKWI--GRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY  575 (768)
T ss_dssp             SSCCCSCCCGGG--GGCTTCCEEECCSSCCEEECCGG-GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred             CCccCCcCChHH--hcCCCCCEEECCCCcccCcCCHH-HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccc
Confidence            777776666555  56677777777777777666654 55666777777665532  1111111000            0


Q ss_pred             -----------------EEee------------------------cCcchhhhhhhhccceEEccCcccCccchhhhhCC
Q 039161          152 -----------------TVAM------------------------KGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNF  190 (333)
Q Consensus       152 -----------------~~~~------------------------~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l  190 (333)
                                       ....                        .+........++.|+.||+++|++++.+|..++.+
T Consensus       576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l  655 (768)
T 3rgz_A          576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM  655 (768)
T ss_dssp             EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC
T ss_pred             cccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc
Confidence                             0000                        00000111225789999999999999999999999


Q ss_pred             CCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccc
Q 039161          191 KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYI  270 (333)
Q Consensus       191 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~  270 (333)
                      +.|+.|+|++|+++|.+|..++.+++|+.|||++|++++.+|..+..+++|+.||+++|+++|.+|...++.+|....|.
T Consensus       656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~  735 (768)
T 3rgz_A          656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL  735 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGC
T ss_pred             ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCC
Q 039161          271 GNIRLCGEPLTVRCSNDGLPKAP  293 (333)
Q Consensus       271 ~~~~l~g~~~~~~C~~~~~~~~~  293 (333)
                      +|+.+||.|+. .|........+
T Consensus       736 gN~~Lcg~~l~-~C~~~~~~~~~  757 (768)
T 3rgz_A          736 NNPGLCGYPLP-RCDPSNADGYA  757 (768)
T ss_dssp             SCTEEESTTSC-CCCSCC-----
T ss_pred             CCchhcCCCCc-CCCCCccCCCC
Confidence            99999999987 78765444333

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3.7e-36  Score=259.90  Aligned_cols=259  Identities=25%  Similarity=0.372  Sum_probs=227.0

Q ss_pred             CcccEEECcCCcccc--ccchhhhCCCCccEEECCC-CcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161            5 TELITLHLENNSLEG--HIHNTFANASHLRSLDLYS-NKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI   81 (333)
Q Consensus         5 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   81 (333)
                      .+++.|+|++|.+++  ..|..|.++++|++|++++ |.+++.+|..|.++++|++|++++|.+++..|..|..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            479999999999998  8899999999999999995 9999999999999999999999999999889999999999999


Q ss_pred             EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChH-HhhhhcccCcccccccccccCceEEeecCcch
Q 039161           82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSME-AMKNVDEQGRLEYMGRAFCDESITVAMKGHDF  160 (333)
Q Consensus        82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~-~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (333)
                      |++++|.+++..+..+  ..+++|++|++++|.+++.+|.. +..+. .|+.+++..+...-               ...
T Consensus       130 L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~---------------~~~  191 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSI--SSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTG---------------KIP  191 (313)
T ss_dssp             EECCSSEEESCCCGGG--GGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEE---------------ECC
T ss_pred             EeCCCCccCCcCChHH--hcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeec---------------cCC
Confidence            9999999998877766  78999999999999999888877 44454 88888887664210               001


Q ss_pred             hhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCc
Q 039161          161 QLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA  240 (333)
Q Consensus       161 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  240 (333)
                      .....+. |+.|++++|.+++..|..+..+++|+.|++++|.+++.+|. +..+++|++|++++|.+++.+|..+..+++
T Consensus       192 ~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  269 (313)
T 1ogq_A          192 PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKF  269 (313)
T ss_dssp             GGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred             hHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcC
Confidence            1111133 99999999999999999999999999999999999976665 788999999999999999999999999999


Q ss_pred             cceeecccCcceecCCCCCccCCccccccccccCCCCCCCCCCC
Q 039161          241 LALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRC  284 (333)
Q Consensus       241 L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C  284 (333)
                      |+.|++++|+++|.+|....+..++...+.+|+.+||.|+. .|
T Consensus       270 L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          270 LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             CCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            99999999999999999877778888888899999998776 36

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.9e-32  Score=249.02  Aligned_cols=278  Identities=20%  Similarity=0.252  Sum_probs=187.6

Q ss_pred             CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCC-ChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161            3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPL-PRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI   81 (333)
Q Consensus         3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   81 (333)
                      +|+++++|+|++|.+++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..|..+++|++
T Consensus        28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  107 (455)
T 3v47_A           28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV  107 (455)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred             CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence            3467888888888888887888888888888888888876443 567888888888888888888777778888888888


Q ss_pred             EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccc-cccccc-------------
Q 039161           82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEY-MGRAFC-------------  147 (333)
Q Consensus        82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~-~~~~~~-------------  147 (333)
                      |++++|.+++..+....+..+++|++|++++|.+++..|..++..+++|+.+++.++... +.....             
T Consensus       108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l  187 (455)
T 3v47_A          108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL  187 (455)
T ss_dssp             EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred             EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence            888888877633222112667778888888887776666665667777777766554311 000000             


Q ss_pred             ------------------------cCceEEeecC----------------------------------------------
Q 039161          148 ------------------------DESITVAMKG----------------------------------------------  157 (333)
Q Consensus       148 ------------------------~~~~~~~~~~----------------------------------------------  157 (333)
                                              ..........                                              
T Consensus       188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  267 (455)
T 3v47_A          188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF  267 (455)
T ss_dssp             TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred             ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence                                    0000000000                                              


Q ss_pred             ----------------------cchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCC
Q 039161          158 ----------------------HDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMT  215 (333)
Q Consensus       158 ----------------------~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  215 (333)
                                            ........+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..++
T Consensus       268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  347 (455)
T 3v47_A          268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD  347 (455)
T ss_dssp             TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred             ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence                                  0011122356677777777777766666777777777777777777766677777777


Q ss_pred             CCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCCCCCCCC
Q 039161          216 ALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCS  285 (333)
Q Consensus       216 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C~  285 (333)
                      +|++|+|++|.+++..|..+..+++|+.|++++|++++ +|..    .+........+.+.+||+.|+|+
T Consensus       348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~----~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDG----IFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTT----TTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cCCEEECCCCcccccChhhccccccccEEECCCCcccc-CCHh----HhccCCcccEEEccCCCcccCCC
Confidence            77777777777776667777777778888888877763 3332    23444455667889999999997

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.9e-32  Score=263.86  Aligned_cols=235  Identities=30%  Similarity=0.385  Sum_probs=193.6

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      +|++|++++|.+++..|..|.++++|++|++++|.+++.+|..|.++++|++|++++|.+++.+|..+..+++|++|+++
T Consensus       395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  474 (768)
T 3rgz_A          395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD  474 (768)
T ss_dssp             CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence            68888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI  165 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (333)
                      +|++++..+..+  ..+++|++|++++|.+++.+|.. +..+++|+.+++.+|.-.               +........
T Consensus       475 ~N~l~~~~p~~l--~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~---------------~~~p~~l~~  536 (768)
T 3rgz_A          475 FNDLTGEIPSGL--SNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFS---------------GNIPAELGD  536 (768)
T ss_dssp             SSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCE---------------EECCGGGGG
T ss_pred             CCcccCcCCHHH--hcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCCccc---------------CcCCHHHcC
Confidence            888887777665  77888888888888888877765 667778888887765321               001111223


Q ss_pred             hhccceEEccCcccCccchhh-----------------------------------------------------------
Q 039161          166 FVMFRAMDFSSNRFHGEISEV-----------------------------------------------------------  186 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~-----------------------------------------------------------  186 (333)
                      +++|+.|++++|.+++.+|..                                                           
T Consensus       537 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~  616 (768)
T 3rgz_A          537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT  616 (768)
T ss_dssp             CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTT
T ss_pred             CCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccc
Confidence            677888888888777665543                                                           


Q ss_pred             -----------hhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecC
Q 039161          187 -----------LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRI  255 (333)
Q Consensus       187 -----------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  255 (333)
                                 +..+++|+.|+|++|+++|.+|..++.+++|+.|+|++|.+++.+|..+..+++|+.||+++|+++|.+
T Consensus       617 ~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~i  696 (768)
T 3rgz_A          617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI  696 (768)
T ss_dssp             SCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECC
T ss_pred             cceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcC
Confidence                       334578999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q 039161          256 PRG  258 (333)
Q Consensus       256 p~~  258 (333)
                      |..
T Consensus       697 p~~  699 (768)
T 3rgz_A          697 PQA  699 (768)
T ss_dssp             CGG
T ss_pred             ChH
Confidence            975

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=100.00  E-value=5.3e-32  Score=245.70  Aligned_cols=231  Identities=19%  Similarity=0.172  Sum_probs=166.3

Q ss_pred             CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161            3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL   82 (333)
Q Consensus         3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   82 (333)
                      +|+++++|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.++...+..|..+++|++|
T Consensus        73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  152 (452)
T 3zyi_A           73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL  152 (452)
T ss_dssp             CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred             CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEE
Confidence            45678888888888888888888888888888888888887777888888888888888888887666678888888888


Q ss_pred             EcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhh
Q 039161           83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQL  162 (333)
Q Consensus        83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (333)
                      ++++|+++..++..+  ..+++|++|++++|+..+.++...+..+++|+.+++..+...--.                 .
T Consensus       153 ~L~~N~l~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-----------------~  213 (452)
T 3zyi_A          153 WLRNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-----------------N  213 (452)
T ss_dssp             ECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-----------------C
T ss_pred             ECCCCCcceeCHhHH--hcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-----------------c
Confidence            888888887776665  778888888888865544666655666666666666554211000                 0


Q ss_pred             hhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccc
Q 039161          163 QNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALA  242 (333)
Q Consensus       163 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  242 (333)
                      ...+++|++|++++|.+++..|..|..+++|+.|++++|++++..+..|..+++|+.|+|++|.+++..+..+..+++|+
T Consensus       214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  293 (452)
T 3zyi_A          214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV  293 (452)
T ss_dssp             CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred             ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence            11245666777777776666666666667777777777777666666666667777777777777655555666666677


Q ss_pred             eeecccCcce
Q 039161          243 LLNLSYNRLW  252 (333)
Q Consensus       243 ~L~l~~N~l~  252 (333)
                      .|++++|++.
T Consensus       294 ~L~L~~Np~~  303 (452)
T 3zyi_A          294 ELHLHHNPWN  303 (452)
T ss_dssp             EEECCSSCEE
T ss_pred             EEEccCCCcC
Confidence            7777777665

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=100.00  E-value=7.3e-32  Score=243.97  Aligned_cols=230  Identities=18%  Similarity=0.201  Sum_probs=152.6

Q ss_pred             CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161            3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL   82 (333)
Q Consensus         3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   82 (333)
                      +|++++.|+|++|++++..+..|.++++|++|+|++|.+++..+.+|.++++|++|+|++|.++...+..|..+++|++|
T Consensus        62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  141 (440)
T 3zyj_A           62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL  141 (440)
T ss_dssp             CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred             CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCcee
Confidence            34567888888888887777788888888888888888887777778888888888888888876666677788888888


Q ss_pred             EcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccc-cccccccCceEEeecCcchh
Q 039161           83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEY-MGRAFCDESITVAMKGHDFQ  161 (333)
Q Consensus        83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  161 (333)
                      ++++|.+...++..+  ..+++|++|++++|+..+.++...+..+++|+.|++.++... ++                  
T Consensus       142 ~L~~N~i~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~------------------  201 (440)
T 3zyj_A          142 WLRNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP------------------  201 (440)
T ss_dssp             ECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC------------------
T ss_pred             eCCCCcccccCHHHh--hhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc------------------
Confidence            888888877766655  677888888888755444555555666656655555544211 00                  


Q ss_pred             hhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCcc
Q 039161          162 LQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTAL  241 (333)
Q Consensus       162 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  241 (333)
                      ....+++|+.|++++|++++..|..|..+++|+.|++++|++++..+..|.++++|+.|+|++|.+++..+..+..+++|
T Consensus       202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  281 (440)
T 3zyj_A          202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL  281 (440)
T ss_dssp             CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred             ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence            01114556666666666665555556666666666666666665555556666666666666666665555555556666


Q ss_pred             ceeecccCcce
Q 039161          242 ALLNLSYNRLW  252 (333)
Q Consensus       242 ~~L~l~~N~l~  252 (333)
                      +.|++++|++.
T Consensus       282 ~~L~L~~Np~~  292 (440)
T 3zyj_A          282 ERIHLHHNPWN  292 (440)
T ss_dssp             CEEECCSSCEE
T ss_pred             CEEEcCCCCcc
Confidence            66666666655

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=6.2e-32  Score=247.04  Aligned_cols=275  Identities=16%  Similarity=0.160  Sum_probs=202.1

Q ss_pred             CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161            3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL   82 (333)
Q Consensus         3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   82 (333)
                      +|+++++|+|++|++++..+..|.++++|++|+|++|.+++..|.+|.++++|++|+|++|.++...+..|..+++|++|
T Consensus        30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  109 (477)
T 2id5_A           30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL  109 (477)
T ss_dssp             CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred             CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence            55678888888888888888888888888888888888888778888888888888888888886666677888888888


Q ss_pred             EcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc-ccccc----------------
Q 039161           83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGRA----------------  145 (333)
Q Consensus        83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~----------------  145 (333)
                      ++++|.+.+..+..+  ..+++|++|++++|.+++..+. .+..+++|+.+++.++.. .+...                
T Consensus       110 ~Ls~n~i~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  186 (477)
T 2id5_A          110 DISENKIVILLDYMF--QDLYNLKSLEVGDNDLVYISHR-AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL  186 (477)
T ss_dssp             ECTTSCCCEECTTTT--TTCTTCCEEEECCTTCCEECTT-SSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred             ECCCCccccCChhHc--cccccCCEEECCCCccceeChh-hccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence            888888877766665  6677888888888877754443 356666777666655421 11100                


Q ss_pred             --------cc-----cCceEEeecCcch---hhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCcc
Q 039161          146 --------FC-----DESITVAMKGHDF---QLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPV  209 (333)
Q Consensus       146 --------~~-----~~~~~~~~~~~~~---~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  209 (333)
                              .+     .....+.......   .......+|+.|++++|+++...+..+..+++|+.|+|++|.+++..+.
T Consensus       187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  266 (477)
T 2id5_A          187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS  266 (477)
T ss_dssp             CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTT
T ss_pred             cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChh
Confidence                    00     0000000000000   0000123788889999999866667888999999999999999988888


Q ss_pred             ccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCCCCCCCC
Q 039161          210 SFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCS  285 (333)
Q Consensus       210 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C~  285 (333)
                      .|..+++|+.|+|++|.+++..|..+..+++|+.|++++|.+++ +|..    .|........+.+.+||+.|+|.
T Consensus       267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~----~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT-LEES----VFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC-CCGG----GBSCGGGCCEEECCSSCEECSGG
T ss_pred             hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce-eCHh----HcCCCcccCEEEccCCCccCccc
Confidence            89999999999999999998888999999999999999999974 3332    34444555667888999999885

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=7.1e-31  Score=226.30  Aligned_cols=232  Identities=21%  Similarity=0.244  Sum_probs=149.9

Q ss_pred             CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCC--CChhhcCCCCCcEEEccCCcCCCcccccccCCCCCC
Q 039161            3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGP--LPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELK   80 (333)
Q Consensus         3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   80 (333)
                      +|+++++|++++|.++...+..|.++++|++|++++|.++..  .+..+..+++|++|++++|.++ .+|..+..+++|+
T Consensus        26 ~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~  104 (306)
T 2z66_A           26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE  104 (306)
T ss_dssp             CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCC
T ss_pred             CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCC
Confidence            456899999999999977777789999999999999998733  3677788999999999999988 4667788999999


Q ss_pred             EEEcccCcCCCCCC-CCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcc
Q 039161           81 ILVLRSNQFDCPPC-NSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHD  159 (333)
Q Consensus        81 ~L~L~~n~l~~~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (333)
                      +|++++|++++..+ ..+  ..+++|++|++++|.+++..+.. +..+++|+.+++.++...-.              ..
T Consensus       105 ~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~--------------~~  167 (306)
T 2z66_A          105 HLDFQHSNLKQMSEFSVF--LSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQEN--------------FL  167 (306)
T ss_dssp             EEECTTSEEESSTTTTTT--TTCTTCCEEECTTSCCEECSTTT-TTTCTTCCEEECTTCEEGGG--------------EE
T ss_pred             EEECCCCcccccccchhh--hhccCCCEEECCCCcCCccchhh-cccCcCCCEEECCCCccccc--------------cc
Confidence            99999999987765 344  77899999999999988655433 45545555544443321000              00


Q ss_pred             hhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccC
Q 039161          160 FQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT  239 (333)
Q Consensus       160 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  239 (333)
                      ......+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..++
T Consensus       168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~  247 (306)
T 2z66_A          168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP  247 (306)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCC
T ss_pred             hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhh
Confidence            00011134455555555555544444455555555555555555544444445555555555555555544444444442


Q ss_pred             -ccceeecccCcce
Q 039161          240 -ALALLNLSYNRLW  252 (333)
Q Consensus       240 -~L~~L~l~~N~l~  252 (333)
                       +|+.|++++|+++
T Consensus       248 ~~L~~L~L~~N~~~  261 (306)
T 2z66_A          248 SSLAFLNLTQNDFA  261 (306)
T ss_dssp             TTCCEEECTTCCEE
T ss_pred             ccCCEEEccCCCee
Confidence             4555555555554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=1e-31  Score=232.09  Aligned_cols=230  Identities=23%  Similarity=0.344  Sum_probs=199.7

Q ss_pred             CCcCcccEEECcC-CccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCC
Q 039161            2 SFSTELITLHLEN-NSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELK   80 (333)
Q Consensus         2 ~l~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   80 (333)
                      +++ +|++|++++ |.+.+..|..|.++++|++|++++|.+++.+|..|.++++|++|++++|.+++..|..+..+++|+
T Consensus        74 ~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  152 (313)
T 1ogq_A           74 NLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV  152 (313)
T ss_dssp             GCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred             CCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCC
Confidence            355 899999995 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcccCcCCCCCCCCCCcccCC-cccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcc
Q 039161           81 ILVLRSNQFDCPPCNSNITFPFQ-ALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHD  159 (333)
Q Consensus        81 ~L~L~~n~l~~~~~~~~~~~~l~-~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (333)
                      +|++++|++++..+..+  ..++ +|++|++++|.+++.+|.. +..++ |+.+++.++...               +..
T Consensus       153 ~L~L~~N~l~~~~p~~l--~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~N~l~---------------~~~  213 (313)
T 1ogq_A          153 GITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSRNMLE---------------GDA  213 (313)
T ss_dssp             EEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCSSEEE---------------ECC
T ss_pred             eEECcCCcccCcCCHHH--hhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcCCccc---------------CcC
Confidence            99999999997777665  6676 9999999999999888866 44554 888887765321               011


Q ss_pred             hhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccC
Q 039161          160 FQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT  239 (333)
Q Consensus       160 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  239 (333)
                      ......+++|+.|++++|.+++.+|. +..+++|++|++++|.+++.+|..+..+++|+.|++++|.+++.+|.. ..++
T Consensus       214 ~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~  291 (313)
T 1ogq_A          214 SVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQ  291 (313)
T ss_dssp             GGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGG
T ss_pred             CHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cccc
Confidence            12223378999999999999976666 788999999999999999999999999999999999999999988887 8899


Q ss_pred             ccceeecccCc-cee
Q 039161          240 ALALLNLSYNR-LWG  253 (333)
Q Consensus       240 ~L~~L~l~~N~-l~~  253 (333)
                      +|+.+++++|+ +.|
T Consensus       292 ~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          292 RFDVSAYANNKCLCG  306 (313)
T ss_dssp             GSCGGGTCSSSEEES
T ss_pred             ccChHHhcCCCCccC
Confidence            99999999998 544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.97  E-value=9.7e-31  Score=247.09  Aligned_cols=114  Identities=17%  Similarity=0.127  Sum_probs=96.4

Q ss_pred             CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161            2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI   81 (333)
Q Consensus         2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   81 (333)
                      ++|+++++|||++|+|+++.+.+|.++++|++|+|++|+|++..+.+|.++++|++|+|++|++++..+.+|.++++|++
T Consensus        49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~  128 (635)
T 4g8a_A           49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK  128 (635)
T ss_dssp             SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred             CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence            46778999999999999888888999999999999999999877888999999999999999998777778888999999


Q ss_pred             EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccc
Q 039161           82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTG  117 (333)
Q Consensus        82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~  117 (333)
                      |++++|++++.++..+  ..+++|++|++++|.++.
T Consensus       129 L~Ls~N~l~~l~~~~~--~~L~~L~~L~Ls~N~l~~  162 (635)
T 4g8a_A          129 LVAVETNLASLENFPI--GHLKTLKELNVAHNLIQS  162 (635)
T ss_dssp             EECTTSCCCCSTTCCC--TTCTTCCEEECCSSCCCC
T ss_pred             EECCCCcCCCCChhhh--hcCcccCeeccccCcccc
Confidence            9999998888776665  667777777777777654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=5.5e-31  Score=247.75  Aligned_cols=272  Identities=21%  Similarity=0.228  Sum_probs=189.4

Q ss_pred             CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccc-cccCCCCCCE
Q 039161            3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPC-WMGSLSELKI   81 (333)
Q Consensus         3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~   81 (333)
                      ++ +|++|++++|.++ .+|..+.++++|++|++++|.+++..|..+..+++|++|++++|.+.+.++. .+..+++|++
T Consensus       277 l~-~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  354 (606)
T 3t6q_A          277 FS-GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE  354 (606)
T ss_dssp             CT-TCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred             cc-CCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence            45 7888888888888 5667788888888888888888877777888888888888888887755544 4778888888


Q ss_pred             EEcccCcCCCCC--CCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccc-cc-cccc---cCceEEe
Q 039161           82 LVLRSNQFDCPP--CNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEY-MG-RAFC---DESITVA  154 (333)
Q Consensus        82 L~L~~n~l~~~~--~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~-~~-~~~~---~~~~~~~  154 (333)
                      |++++|.+.+..  +..+  ..+++|++|++++|.+++..|. .+..+++|+.+++.++... .. ...+   .......
T Consensus       355 L~l~~n~l~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  431 (606)
T 3t6q_A          355 LDLSHDDIETSDCCNLQL--RNLSHLQSLNLSYNEPLSLKTE-AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN  431 (606)
T ss_dssp             EECCSSCCCEEEESTTTT--TTCTTCCEEECCSCSCEEECTT-TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred             EECCCCccccccCcchhc--ccCCCCCEEECCCCcCCcCCHH-HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence            888888887665  3333  6778888888888887755443 3667777777777665421 10 0000   0011111


Q ss_pred             e-----cCcchhhhhhhhccceEEccCcccCcc---chhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCc
Q 039161          155 M-----KGHDFQLQNIFVMFRAMDFSSNRFHGE---ISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNK  226 (333)
Q Consensus       155 ~-----~~~~~~~~~~~~~L~~L~ls~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  226 (333)
                      .     ..........+++|++|++++|.+++.   .+..+..+++|++|++++|.+++..|..|..+++|++|++++|.
T Consensus       432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  511 (606)
T 3t6q_A          432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR  511 (606)
T ss_dssp             CTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence            1     111122223367778888888877642   22457777788888888888877777777778888888888888


Q ss_pred             CCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCCCCCCCC
Q 039161          227 LDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCS  285 (333)
Q Consensus       227 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C~  285 (333)
                      +++..|..+..+++| .|++++|++++..|.     .+........+++.|||+.|+|.
T Consensus       512 l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~-----~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          512 LTSSSIEALSHLKGI-YLNLASNHISIILPS-----LLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CCGGGGGGGTTCCSC-EEECCSSCCCCCCGG-----GHHHHHTSSEEECTTCCEECSGG
T ss_pred             cCcCChhHhCccccc-EEECcCCcccccCHh-----hcccCCCCCEEeCCCCCccccCC
Confidence            877777777777777 888888888754443     23344445677899999999997

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.97  E-value=6.7e-31  Score=224.13  Aligned_cols=210  Identities=20%  Similarity=0.175  Sum_probs=132.6

Q ss_pred             cCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCc-CCCcccccccCCCCCCEE
Q 039161            4 STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM-ISDSFPCWMGSLSELKIL   82 (333)
Q Consensus         4 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L   82 (333)
                      |+++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|. ++...+..+..+++|++|
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            3456666666666665555556666666666666666655555556666666666666665 554445555556666666


Q ss_pred             EcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhh
Q 039161           83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQL  162 (333)
Q Consensus        83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (333)
                      ++++|.+++..+..+  ..+++|++|++++|.+++..+ ..+.                                     
T Consensus       111 ~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~-~~~~-------------------------------------  150 (285)
T 1ozn_A          111 HLDRCGLQELGPGLF--RGLAALQYLYLQDNALQALPD-DTFR-------------------------------------  150 (285)
T ss_dssp             ECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCT-TTTT-------------------------------------
T ss_pred             ECCCCcCCEECHhHh--hCCcCCCEEECCCCcccccCH-hHhc-------------------------------------
Confidence            666666655554444  455566666666665552221 1111                                     


Q ss_pred             hhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccc
Q 039161          163 QNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALA  242 (333)
Q Consensus       163 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  242 (333)
                        .+++|++|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+
T Consensus       151 --~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  228 (285)
T 1ozn_A          151 --DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ  228 (285)
T ss_dssp             --TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred             --cCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccC
Confidence              156677777777777755555677777777777777777777777777777777777777777765555677777777


Q ss_pred             eeecccCcceecC
Q 039161          243 LLNLSYNRLWGRI  255 (333)
Q Consensus       243 ~L~l~~N~l~~~~  255 (333)
                      .|++++|++.+..
T Consensus       229 ~L~l~~N~~~c~~  241 (285)
T 1ozn_A          229 YLRLNDNPWVCDC  241 (285)
T ss_dssp             EEECCSSCEECSG
T ss_pred             EEeccCCCccCCC
Confidence            7777777776433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=4e-30  Score=229.05  Aligned_cols=264  Identities=17%  Similarity=0.159  Sum_probs=142.3

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      +|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.++...+..|..+++|++|+++
T Consensus        70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~  149 (390)
T 3o6n_A           70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS  149 (390)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC
Confidence            45555555555554444455555555555555555554444445555555555555555553333334455555555555


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccc-ccc-------------------c
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEY-MGR-------------------A  145 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~-~~~-------------------~  145 (333)
                      +|++++..+..+  ..+++|++|++++|.+++. +   ...++.|+.+++..+... +..                   .
T Consensus       150 ~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~-~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~  223 (390)
T 3o6n_A          150 NNNLERIEDDTF--QATTSLQNLQLSSNRLTHV-D---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP  223 (390)
T ss_dssp             SSCCCBCCTTTT--SSCTTCCEEECCSSCCSBC-C---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC
T ss_pred             CCccCccChhhc--cCCCCCCEEECCCCcCCcc-c---cccccccceeecccccccccCCCCcceEEECCCCeeeecccc
Confidence            555554444433  4455555555555555432 1   122233333332222100 000                   0


Q ss_pred             cccCceEEeec---CcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeC
Q 039161          146 FCDESITVAMK---GHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDL  222 (333)
Q Consensus       146 ~~~~~~~~~~~---~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  222 (333)
                      ...........   .........+++|++|++++|.+++..|..+..+++|++|++++|++++ +|..+..+++|++|++
T Consensus       224 ~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L  302 (390)
T 3o6n_A          224 VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDL  302 (390)
T ss_dssp             CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEEC
T ss_pred             ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEEC
Confidence            00000000000   0001122335677777887777776667777777788888888887774 4555566778888888


Q ss_pred             CCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCCCCCCCC
Q 039161          223 SFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCS  285 (333)
Q Consensus       223 s~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C~  285 (333)
                      ++|.++ .+|..+..+++|+.|++++|++++ +|       +........+.+.+||+.|+|.
T Consensus       303 ~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~-------~~~~~~L~~L~l~~N~~~~~~~  356 (390)
T 3o6n_A          303 SHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK-------LSTHHTLKNLTLSHNDWDCNSL  356 (390)
T ss_dssp             CSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC-------CCTTCCCSEEECCSSCEEHHHH
T ss_pred             CCCcce-ecCccccccCcCCEEECCCCccce-eC-------chhhccCCEEEcCCCCccchhH
Confidence            888777 456666777788888888888762 22       1222334566889999998774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.2e-29  Score=220.87  Aligned_cols=257  Identities=18%  Similarity=0.222  Sum_probs=182.5

Q ss_pred             CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161            3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL   82 (333)
Q Consensus         3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   82 (333)
                      +|+.+++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.++ .+|..+.  ++|++|
T Consensus        50 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L  126 (330)
T 1xku_A           50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQEL  126 (330)
T ss_dssp             CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEE
T ss_pred             CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEE
Confidence            3456777777777777766667777777777777777777666777777777777777777776 3444433  677777


Q ss_pred             EcccCcCCCCCCCCCCcccCCcccEEEcCCCccccc-CCcccccChHHhhhhcccCcccccccccccCceEEeecCcchh
Q 039161           83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGF-LPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQ  161 (333)
Q Consensus        83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (333)
                      ++++|.+++..+..+  ..+++|++|++++|.++.. .....+..+++|+.+++..+...               ..+. 
T Consensus       127 ~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~---------------~l~~-  188 (330)
T 1xku_A          127 RVHENEITKVRKSVF--NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---------------TIPQ-  188 (330)
T ss_dssp             ECCSSCCCBBCHHHH--TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC---------------SCCS-
T ss_pred             ECCCCcccccCHhHh--cCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc---------------cCCc-
Confidence            777777776655444  5677777777777777531 22233566667777666554211               0000 


Q ss_pred             hhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCcc
Q 039161          162 LQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTAL  241 (333)
Q Consensus       162 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  241 (333)
                        ...++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|
T Consensus       189 --~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L  265 (330)
T 1xku_A          189 --GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI  265 (330)
T ss_dssp             --SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred             --cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCc
Confidence              11368999999999999888889999999999999999999888888999999999999999999 788889999999


Q ss_pred             ceeecccCcceecCCCCCccCCc-cccccccccCCCCCCCCCC
Q 039161          242 ALLNLSYNRLWGRIPRGNQFNTF-QNDSYIGNIRLCGEPLTVR  283 (333)
Q Consensus       242 ~~L~l~~N~l~~~~p~~~~~~~~-~~~~~~~~~~l~g~~~~~~  283 (333)
                      +.|++++|++++..+....-... ........+.+.+||+.+.
T Consensus       266 ~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~  308 (330)
T 1xku_A          266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW  308 (330)
T ss_dssp             CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred             CEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc
Confidence            99999999998433332111111 1122344567788887643

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=9.6e-30  Score=231.17  Aligned_cols=252  Identities=20%  Similarity=0.190  Sum_probs=163.1

Q ss_pred             cccEEECcCCcccc-ccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCccccc--ccCCCCCCEE
Q 039161            6 ELITLHLENNSLEG-HIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCW--MGSLSELKIL   82 (333)
Q Consensus         6 ~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L   82 (333)
                      +|++|++++|.+.+ ..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..+..  +..+++|++|
T Consensus        55 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L  134 (455)
T 3v47_A           55 DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEML  134 (455)
T ss_dssp             TCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEE
T ss_pred             cccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEE
Confidence            56666666666653 33455666666666666666666656666666666666666666666533332  5566666666


Q ss_pred             EcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCccccc---------------------------------ChHH
Q 039161           83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFP---------------------------------SMEA  129 (333)
Q Consensus        83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~---------------------------------~l~~  129 (333)
                      ++++|.+++..+..+ +..+++|++|++++|.+++..+..+..                                 .+++
T Consensus       135 ~L~~n~l~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~  213 (455)
T 3v47_A          135 VLRDNNIKKIQPASF-FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS  213 (455)
T ss_dssp             ECCSSBCCSCCCCGG-GGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCE
T ss_pred             ECCCCccCccCcccc-cCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccce
Confidence            666666665544331 145556666666666555443322100                                 1122


Q ss_pred             hhhhcccCc---------------------------------------------------------------cc-ccccc
Q 039161          130 MKNVDEQGR---------------------------------------------------------------LE-YMGRA  145 (333)
Q Consensus       130 L~~l~~~~~---------------------------------------------------------------~~-~~~~~  145 (333)
                      |+.+++.++                                                               .. .....
T Consensus       214 L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  293 (455)
T 3v47_A          214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS  293 (455)
T ss_dssp             EEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT
T ss_pred             eeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchh
Confidence            333333222                                                               10 00000


Q ss_pred             c---ccCceEEeec-----CcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCC
Q 039161          146 F---CDESITVAMK-----GHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL  217 (333)
Q Consensus       146 ~---~~~~~~~~~~-----~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  217 (333)
                      .   ..........     .........+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|
T Consensus       294 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  373 (455)
T 3v47_A          294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL  373 (455)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccc
Confidence            0   0011111111     1112223347899999999999998889999999999999999999998889999999999


Q ss_pred             cEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCCC
Q 039161          218 ESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG  258 (333)
Q Consensus       218 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~  258 (333)
                      ++|++++|.+++..+..+..+++|+.|++++|++++.+|..
T Consensus       374 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  414 (455)
T 3v47_A          374 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  414 (455)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             cEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence            99999999999877778899999999999999999888854

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=9.6e-30  Score=221.00  Aligned_cols=209  Identities=19%  Similarity=0.244  Sum_probs=173.6

Q ss_pred             CcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEc
Q 039161            5 TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVL   84 (333)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   84 (333)
                      ++++.|+|++|.++ .+|..+..+++|++|++++|.++ .+|..+.++++|++|+|++|.++ .+|..+..+++|++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            37999999999999 66777888999999999999999 88999999999999999999999 77889999999999999


Q ss_pred             ccCcCCCCCCCCCC-------cccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecC
Q 039161           85 RSNQFDCPPCNSNI-------TFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKG  157 (333)
Q Consensus        85 ~~n~l~~~~~~~~~-------~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~  157 (333)
                      ++|++.+..+..+.       +..+++|++|++++|.++ .+|.. +..                               
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~-l~~-------------------------------  204 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS-IAN-------------------------------  204 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGG-GGG-------------------------------
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHh-hcC-------------------------------
Confidence            99888877776541       134899999999999988 66644 222                               


Q ss_pred             cchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccc
Q 039161          158 HDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS  237 (333)
Q Consensus       158 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  237 (333)
                              +++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+..
T Consensus       205 --------l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~  275 (328)
T 4fcg_A          205 --------LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR  275 (328)
T ss_dssp             --------CTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG
T ss_pred             --------CCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc
Confidence                    567788888888887 45556778888888888888888788888888888888888888887788888888


Q ss_pred             cCccceeecccCcceecCCCC
Q 039161          238 VTALALLNLSYNRLWGRIPRG  258 (333)
Q Consensus       238 l~~L~~L~l~~N~l~~~~p~~  258 (333)
                      +++|+.|++++|++.+.+|..
T Consensus       276 l~~L~~L~L~~n~~~~~iP~~  296 (328)
T 4fcg_A          276 LTQLEKLDLRGCVNLSRLPSL  296 (328)
T ss_dssp             CTTCCEEECTTCTTCCCCCGG
T ss_pred             CCCCCEEeCCCCCchhhccHH
Confidence            888888888888888777764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=3.3e-29  Score=218.35  Aligned_cols=253  Identities=19%  Similarity=0.228  Sum_probs=172.0

Q ss_pred             CcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEc
Q 039161            5 TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVL   84 (333)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   84 (333)
                      +++++|++++|.+++..+..|.++++|++|++++|++++..|.+|.++++|++|++++|.++ .+|..+.  ++|++|++
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l  130 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI  130 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence            35666777776666666666666677777777777666666666666667777777776666 3443333  56677777


Q ss_pred             ccCcCCCCCCCCCCcccCCcccEEEcCCCcccc-cCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhh
Q 039161           85 RSNQFDCPPCNSNITFPFQALRIIDLSHTEFTG-FLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQ  163 (333)
Q Consensus        85 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~-~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (333)
                      ++|.++..++..+  ..+++|++|++++|.++. ..+...+..+ +|+.+++..+.-.               ..+.   
T Consensus       131 ~~n~i~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~---------------~l~~---  189 (332)
T 2ft3_A          131 HDNRIRKVPKGVF--SGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT---------------GIPK---  189 (332)
T ss_dssp             CSSCCCCCCSGGG--SSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS---------------SCCS---
T ss_pred             CCCccCccCHhHh--CCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC---------------ccCc---
Confidence            7766666554444  556667777777766642 1222224444 5555555443210               0010   


Q ss_pred             hhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccce
Q 039161          164 NIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALAL  243 (333)
Q Consensus       164 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  243 (333)
                      ...+.|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|+.
T Consensus       190 ~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~  268 (332)
T 2ft3_A          190 DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQV  268 (332)
T ss_dssp             SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCE
T ss_pred             cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCE
Confidence            11368999999999999888888999999999999999999888889999999999999999999 78888999999999


Q ss_pred             eecccCcceecCCCCCccCCcc-ccccccccCCCCCCCCC
Q 039161          244 LNLSYNRLWGRIPRGNQFNTFQ-NDSYIGNIRLCGEPLTV  282 (333)
Q Consensus       244 L~l~~N~l~~~~p~~~~~~~~~-~~~~~~~~~l~g~~~~~  282 (333)
                      |++++|++++..+....-..+. .......+.+.|||+.+
T Consensus       269 L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~  308 (332)
T 2ft3_A          269 VYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY  308 (332)
T ss_dssp             EECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred             EECCCCCCCccChhHccccccccccccccceEeecCcccc
Confidence            9999999984433321111111 12234556778888764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=2.6e-30  Score=236.30  Aligned_cols=250  Identities=20%  Similarity=0.209  Sum_probs=190.9

Q ss_pred             CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161            2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI   81 (333)
Q Consensus         2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   81 (333)
                      +++ +|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++
T Consensus        54 ~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  132 (477)
T 2id5_A           54 SFP-HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS  132 (477)
T ss_dssp             TCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCC-CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCE
Confidence            355 7899999999998888888999999999999999988766667888889999999999888777778888888888


Q ss_pred             EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccC------------------------
Q 039161           82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQG------------------------  137 (333)
Q Consensus        82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~------------------------  137 (333)
                      |++++|.+.+..+..+  ..+++|+.|++++|.+++ ++...+..+++|+.+++..                        
T Consensus       133 L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~  209 (477)
T 2id5_A          133 LEVGDNDLVYISHRAF--SGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH  209 (477)
T ss_dssp             EEECCTTCCEECTTSS--TTCTTCCEEEEESCCCSS-CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEEC
T ss_pred             EECCCCccceeChhhc--cCCCCCCEEECCCCcCcc-cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCC
Confidence            8888888877776665  667777777777777763 3333344444444444333                        


Q ss_pred             cc--cccccccc----cCceEEee---cCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCc
Q 039161          138 RL--EYMGRAFC----DESITVAM---KGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIP  208 (333)
Q Consensus       138 ~~--~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  208 (333)
                      +.  ..+....+    .....+..   ...+......+++|+.|++++|.+++..+..+..+++|+.|+|++|++++..|
T Consensus       210 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  289 (477)
T 2id5_A          210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP  289 (477)
T ss_dssp             CTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT
T ss_pred             CccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH
Confidence            21  01111000    11111111   12222334557899999999999998888889999999999999999999999


Q ss_pred             cccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecC
Q 039161          209 VSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRI  255 (333)
Q Consensus       209 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  255 (333)
                      ..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|++.+..
T Consensus       290 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c  336 (477)
T 2id5_A          290 YAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC  336 (477)
T ss_dssp             TTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred             HHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence            99999999999999999999877778899999999999999998543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1e-29  Score=238.32  Aligned_cols=264  Identities=17%  Similarity=0.158  Sum_probs=152.6

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      +|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|..+++|++|+++
T Consensus        76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls  155 (597)
T 3oja_B           76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS  155 (597)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence            45666666666665555556666666666666666665555555566666666666666654444445556666666666


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccc-cc-------------------cc
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEY-MG-------------------RA  145 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~-~~-------------------~~  145 (333)
                      +|.+++.++..+  ..+++|++|++++|.+++. +   ...++.|+.+++..+... +.                   ..
T Consensus       156 ~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~-~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~  229 (597)
T 3oja_B          156 NNNLERIEDDTF--QATTSLQNLQLSSNRLTHV-D---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP  229 (597)
T ss_dssp             SSCCCBCCTTTT--TTCTTCCEEECTTSCCSBC-C---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS
T ss_pred             CCcCCCCChhhh--hcCCcCcEEECcCCCCCCc-C---hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc
Confidence            666655555444  4555666666666655532 2   122233333333322100 00                   00


Q ss_pred             cccCceEEeecC---cchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeC
Q 039161          146 FCDESITVAMKG---HDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDL  222 (333)
Q Consensus       146 ~~~~~~~~~~~~---~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  222 (333)
                      .......+....   ........+++|+.|++++|.+++..|..+..+++|+.|+|++|.+++ +|..+..+++|+.|+|
T Consensus       230 ~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L  308 (597)
T 3oja_B          230 VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDL  308 (597)
T ss_dssp             CCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEEC
T ss_pred             cCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEEC
Confidence            000000000000   011223336778888888888877777778888888888888888874 4556666788888888


Q ss_pred             CCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCCCCCCCC
Q 039161          223 SFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCS  285 (333)
Q Consensus       223 s~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C~  285 (333)
                      ++|.++ .+|..+..+++|+.|++++|.+++. |       +........+.+.+||+.|+|.
T Consensus       309 s~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~-------~~~~~~L~~L~l~~N~~~~~~~  362 (597)
T 3oja_B          309 SHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-------LSTHHTLKNLTLSHNDWDCNSL  362 (597)
T ss_dssp             CSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-------CCTTCCCSEEECCSSCEEHHHH
T ss_pred             CCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C-------hhhcCCCCEEEeeCCCCCChhH
Confidence            888887 5666677778888888888888632 2       1122334556788888888773

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=1.8e-30  Score=228.17  Aligned_cols=259  Identities=17%  Similarity=0.228  Sum_probs=175.2

Q ss_pred             CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161            3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL   82 (333)
Q Consensus         3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   82 (333)
                      ++++|++|++++|.+++..+..|.++++|++|++++|++++..|.+|.++++|++|++++|.+++..+..|..+++|++|
T Consensus        50 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  129 (353)
T 2z80_A           50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL  129 (353)
T ss_dssp             CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEE
T ss_pred             ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEE
Confidence            34579999999999998877789999999999999999998888889999999999999999987666668889999999


Q ss_pred             EcccCcCCCCCC-CCCCcccCCcccEEEcCCCc-ccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcch
Q 039161           83 VLRSNQFDCPPC-NSNITFPFQALRIIDLSHTE-FTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDF  160 (333)
Q Consensus        83 ~L~~n~l~~~~~-~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (333)
                      ++++|+++..+. ..+  ..+++|++|++++|. ++ .++...+..+++|+.+++.++...-               ...
T Consensus       130 ~L~~n~l~~l~~~~~~--~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~  191 (353)
T 2z80_A          130 NLLGNPYKTLGETSLF--SHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQS---------------YEP  191 (353)
T ss_dssp             ECTTCCCSSSCSSCSC--TTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCE---------------ECT
T ss_pred             ECCCCCCcccCchhhh--ccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCc---------------cCH
Confidence            999999987765 344  778999999999985 55 4444447777777777776542110               001


Q ss_pred             hhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccc---cCCCCcEEeCCCCcCCC----CCCC
Q 039161          161 QLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFE---NMTALESLDLSFNKLDG----RIPE  233 (333)
Q Consensus       161 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~n~l~~----~~~~  233 (333)
                      .....+++|++|++++|.++...+..+..+++|+.|++++|.+++..+..+.   ....++.++++++.+.+    .+|.
T Consensus       192 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~  271 (353)
T 2z80_A          192 KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK  271 (353)
T ss_dssp             TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred             HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHH
Confidence            1112267888888888888744444455678888888888888865433221   23344444444444443    2344


Q ss_pred             CccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCCCCCCC
Q 039161          234 QLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRC  284 (333)
Q Consensus       234 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C  284 (333)
                      .+..+++|+.|++++|+++ .+|..    .|........+++.+||+.|+|
T Consensus       272 ~l~~l~~L~~L~Ls~N~l~-~i~~~----~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          272 LLNQISGLLELEFSRNQLK-SVPDG----IFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             HHHTCTTCCEEECCSSCCC-CCCTT----TTTTCTTCCEEECCSSCBCCCH
T ss_pred             HHhcccCCCEEECCCCCCC-ccCHH----HHhcCCCCCEEEeeCCCccCcC
Confidence            4455556666666666665 44432    1222233344455556665555

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=4.9e-29  Score=212.58  Aligned_cols=229  Identities=16%  Similarity=0.188  Sum_probs=195.7

Q ss_pred             cEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccC
Q 039161            8 ITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSN   87 (333)
Q Consensus         8 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   87 (333)
                      ++++.+++.++.. |..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQAV-PVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSSC-CTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcccC-CcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            6789999999844 5433  478999999999999888888999999999999999999887889999999999999999


Q ss_pred             c-CCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhh
Q 039161           88 Q-FDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIF  166 (333)
Q Consensus        88 ~-l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (333)
                      . +....+..+  ..+++|++|++++|.+++..+.. +..                                       +
T Consensus        91 ~~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-~~~---------------------------------------l  128 (285)
T 1ozn_A           91 AQLRSVDPATF--HGLGRLHTLHLDRCGLQELGPGL-FRG---------------------------------------L  128 (285)
T ss_dssp             TTCCCCCTTTT--TTCTTCCEEECTTSCCCCCCTTT-TTT---------------------------------------C
T ss_pred             CCccccCHHHh--cCCcCCCEEECCCCcCCEECHhH-hhC---------------------------------------C
Confidence            7 887777766  78999999999999998554432 221                                       6


Q ss_pred             hccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeec
Q 039161          167 VMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL  246 (333)
Q Consensus       167 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l  246 (333)
                      ++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++
T Consensus       129 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  208 (285)
T 1ozn_A          129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL  208 (285)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeC
Confidence            78999999999999777778999999999999999999877778999999999999999999888999999999999999


Q ss_pred             ccCcceecCCCCCccCCccccccccccCCCCCCCCCCCCC
Q 039161          247 SYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSN  286 (333)
Q Consensus       247 ~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C~~  286 (333)
                      ++|.+++..+.     .+........+.+.+||+.|+|..
T Consensus       209 ~~n~l~~~~~~-----~~~~l~~L~~L~l~~N~~~c~~~~  243 (285)
T 1ozn_A          209 FANNLSALPTE-----ALAPLRALQYLRLNDNPWVCDCRA  243 (285)
T ss_dssp             CSSCCSCCCHH-----HHTTCTTCCEEECCSSCEECSGGG
T ss_pred             CCCcCCcCCHH-----HcccCcccCEEeccCCCccCCCCc
Confidence            99999853322     234444556678999999999874

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.96  E-value=1e-28  Score=209.66  Aligned_cols=212  Identities=21%  Similarity=0.212  Sum_probs=173.1

Q ss_pred             CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161            3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL   82 (333)
Q Consensus         3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   82 (333)
                      +|+++++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|
T Consensus        26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence            56678999999999988877788899999999999999987777788889999999999999987777888889999999


Q ss_pred             EcccCcCCCCCCCCCCcccCCcccEEEcCCCccccc-CCcccccChHHhhhhcccCcccccccccccCceEEeecCcchh
Q 039161           83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGF-LPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQ  161 (333)
Q Consensus        83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (333)
                      ++++|.+.+..+..+  ..+++|++|++++|.+++. +|.. +.                                    
T Consensus       106 ~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~l~~~-~~------------------------------------  146 (276)
T 2z62_A          106 VAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEY-FS------------------------------------  146 (276)
T ss_dssp             ECTTSCCCCSTTCCC--TTCTTCCEEECCSSCCCCCCCCGG-GG------------------------------------
T ss_pred             ECCCCCccccCchhc--ccCCCCCEEECcCCccceecCchh-hc------------------------------------
Confidence            999999888776555  7788999999999988752 3432 11                                    


Q ss_pred             hhhhhhccceEEccCcccCccchhhhhCCCCCC----EEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccc
Q 039161          162 LQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLK----VLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS  237 (333)
Q Consensus       162 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~----~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  237 (333)
                         .+++|++|++++|++++..+..+..+++|+    .|++++|.+++..+..+.. .+|+.|++++|.+++..+..+..
T Consensus       147 ---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~  222 (276)
T 2z62_A          147 ---NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDR  222 (276)
T ss_dssp             ---GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTT
T ss_pred             ---cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcc
Confidence               157888999999999877777777666666    8999999998666655544 47999999999999776677788


Q ss_pred             cCccceeecccCcceecCCC
Q 039161          238 VTALALLNLSYNRLWGRIPR  257 (333)
Q Consensus       238 l~~L~~L~l~~N~l~~~~p~  257 (333)
                      +++|+.|++++|++++..|.
T Consensus       223 l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          223 LTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             CCSCCEEECCSSCBCCCTTT
T ss_pred             cccccEEEccCCcccccCCc
Confidence            99999999999999876654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.96  E-value=1e-28  Score=232.34  Aligned_cols=252  Identities=15%  Similarity=0.158  Sum_probs=158.5

Q ss_pred             CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161            2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI   81 (333)
Q Consensus         2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   81 (333)
                      .+|+.+++|++++|.+++..|..|.++++|++|++++|++++..|.+|.++++|++|+|++|.+++..|..|..+++|++
T Consensus        30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  109 (606)
T 3t6q_A           30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH  109 (606)
T ss_dssp             TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCE
T ss_pred             CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccE
Confidence            35667888888888888888888888888888888888888777888888888888888888888777778888888888


Q ss_pred             EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc-cccc----------------
Q 039161           82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGR----------------  144 (333)
Q Consensus        82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~----------------  144 (333)
                      |++++|.+++..+..+  ..+++|++|++++|.+++..... +..+++|+.+++.++.. .+..                
T Consensus       110 L~L~~n~i~~l~~~~~--~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l  186 (606)
T 3t6q_A          110 LFFIQTGISSIDFIPL--HNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL  186 (606)
T ss_dssp             EECTTSCCSCGGGSCC--TTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEEC
T ss_pred             eeccccCcccCCcchh--ccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccChhhhhhhcccceeEEec
Confidence            8888888877655555  66777777777777777532222 22366666666655421 0100                


Q ss_pred             ----------ccccCce--EEeec-------------------------------Ccchhhhhhh--hccceEEccCccc
Q 039161          145 ----------AFCDESI--TVAMK-------------------------------GHDFQLQNIF--VMFRAMDFSSNRF  179 (333)
Q Consensus       145 ----------~~~~~~~--~~~~~-------------------------------~~~~~~~~~~--~~L~~L~ls~n~l  179 (333)
                                ..+....  .....                               .........+  ..|+.|++++|.+
T Consensus       187 ~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l  266 (606)
T 3t6q_A          187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF  266 (606)
T ss_dssp             TTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC
T ss_pred             CCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc
Confidence                      0000000  00000                               0000000001  1456666666666


Q ss_pred             CccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCC
Q 039161          180 HGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPR  257 (333)
Q Consensus       180 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~  257 (333)
                      ++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|.
T Consensus       267 ~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  343 (606)
T 3t6q_A          267 FNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT  343 (606)
T ss_dssp             SSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS
T ss_pred             CccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch
Confidence            6555555666666666666666666 4555566666666666666666655555556666666666666665554443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.96  E-value=2.4e-29  Score=244.63  Aligned_cols=263  Identities=18%  Similarity=0.223  Sum_probs=179.3

Q ss_pred             CcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEc
Q 039161            5 TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVL   84 (333)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   84 (333)
                      ++|++|++++|.+.+..+..|..+++|++|++++|++++..|..|.++++|++|+|++|.+++..+..|..+++|++|++
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  345 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL  345 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence            47999999999999888999999999999999999999888999999999999999999999888889999999999999


Q ss_pred             ccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc-cccccccc---------------
Q 039161           85 RSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGRAFCD---------------  148 (333)
Q Consensus        85 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~~~~---------------  148 (333)
                      ++|.+....+..+  ..+++|++|++++|.+++. +     .+++|+.+.+.++.. .++.....               
T Consensus       346 ~~N~i~~~~~~~~--~~l~~L~~L~Ls~N~l~~i-~-----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~  417 (844)
T 3j0a_A          346 QKNHIAIIQDQTF--KFLEKLQTLDLRDNALTTI-H-----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLD  417 (844)
T ss_dssp             CSCCCCCCCSSCS--CSCCCCCEEEEETCCSCCC-S-----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSST
T ss_pred             CCCCCCccChhhh--cCCCCCCEEECCCCCCCcc-c-----CCCCcchhccCCCCcccccccccccceeecccCccccCc
Confidence            9999988887766  7789999999999988742 2     134445555443321 11110000               


Q ss_pred             -----------CceEEeecCcc----hhhhhhhhccceEEccCcccC-----ccchhhhhCCCCCCEEEccCCcCCCCCc
Q 039161          149 -----------ESITVAMKGHD----FQLQNIFVMFRAMDFSSNRFH-----GEISEVLGNFKSLKVLNLSHNSLTGNIP  208 (333)
Q Consensus       149 -----------~~~~~~~~~~~----~~~~~~~~~L~~L~ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  208 (333)
                                 ....+..+...    ......+++|+.|++++|.++     +..+..|..+++|+.|+|++|.+++..|
T Consensus       418 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  497 (844)
T 3j0a_A          418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP  497 (844)
T ss_dssp             THHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCT
T ss_pred             hhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccCh
Confidence                       00000000000    000111344555555555543     2233446666777777777777777777


Q ss_pred             cccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCCCCCCCC
Q 039161          209 VSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCS  285 (333)
Q Consensus       209 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C~  285 (333)
                      ..|.++++|+.|+|++|.+++..+..+.  ++|+.|++++|++++..|...  ..+      ....+.|||+.|+|.
T Consensus       498 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~--~~L------~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          498 GVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF--VSL------SVLDITHNKFICECE  564 (844)
T ss_dssp             TSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC--SSC------CEEEEEEECCCCSSS
T ss_pred             hHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh--CCc------CEEEecCCCcccccc
Confidence            7777777777777777777765555554  677777777777776666532  222      233455566666664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.96  E-value=7.6e-29  Score=236.16  Aligned_cols=273  Identities=17%  Similarity=0.186  Sum_probs=163.0

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcC--CCChhhcCC--CCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEG--PLPRSLAKY--IKLEVVNVENNMISDSFPCWMGSLSELKI   81 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   81 (333)
                      +|++|++++|.+++..+..|.++++|++|++++|.+..  ..+..|..+  ++|+.|++++|++++..|.+|..+++|++
T Consensus       330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  409 (680)
T 1ziw_A          330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV  409 (680)
T ss_dssp             TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence            68888888888887777778777777777777765321  112222222  35666666666666555666666677777


Q ss_pred             EEcccCcCCCCCC-CCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccc----ccccc--c--cCceE
Q 039161           82 LVLRSNQFDCPPC-NSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEY----MGRAF--C--DESIT  152 (333)
Q Consensus        82 L~L~~n~l~~~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~----~~~~~--~--~~~~~  152 (333)
                      |++++|.+.+..+ ..+  ..+++|++|++++|.+++..+ ..+..++.|+.+++.++...    ++...  .  .....
T Consensus       410 L~L~~N~l~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~  486 (680)
T 1ziw_A          410 LDLGLNEIGQELTGQEW--RGLENIFEIYLSYNKYLQLTR-NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD  486 (680)
T ss_dssp             EECCSSCCEEECCSGGG--TTCTTCCEEECCSCSEEECCT-TTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEE
T ss_pred             EeCCCCcCccccCcccc--cCcccccEEecCCCCcceeCh-hhhhcCcccccchhccccccccccCCcccccCCCCCEEE
Confidence            7777776654332 223  456666666666666653333 23455555555555443211    00000  0  00000


Q ss_pred             Ee---ecCcchhhhhhhhccceEEccCcccCccch--------hhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEe
Q 039161          153 VA---MKGHDFQLQNIFVMFRAMDFSSNRFHGEIS--------EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLD  221 (333)
Q Consensus       153 ~~---~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  221 (333)
                      +.   ...........+++|++|++++|++++..+        ..+..+++|++|++++|+++...+..|.++++|+.|+
T Consensus       487 Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~  566 (680)
T 1ziw_A          487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID  566 (680)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeE
Confidence            00   011111222336677777777777764321        2356777788888888877755555677778888888


Q ss_pred             CCCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCcc-ccccccccCCCCCCCCCCCCC
Q 039161          222 LSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQ-NDSYIGNIRLCGEPLTVRCSN  286 (333)
Q Consensus       222 Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~-~~~~~~~~~l~g~~~~~~C~~  286 (333)
                      |++|.+++..+..|..+++|+.|++++|++++..|.     .+. .......+.+.|||+.|+|..
T Consensus       567 Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK-----VFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHH-----HHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChh-----HhcccccccCEEEccCCCcccCCcc
Confidence            888888766666677778888888888887754332     122 223345678899999999974

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=1.5e-28  Score=231.69  Aligned_cols=262  Identities=17%  Similarity=0.234  Sum_probs=185.4

Q ss_pred             cccEEECcCCccccccch--hhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCC-CCEE
Q 039161            6 ELITLHLENNSLEGHIHN--TFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSE-LKIL   82 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L   82 (333)
                      +|++|++++|.++ .+|.  .|+++++|++|++++|.++|.+| .|..+++|++|++++|.++ .+|..+..+++ |++|
T Consensus       306 ~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L  382 (636)
T 4eco_A          306 KIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENL  382 (636)
T ss_dssp             TCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEE
T ss_pred             CCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEE
Confidence            7888888888888 6666  78888888888888888887777 7777888888888888887 66777777777 8888


Q ss_pred             EcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCccccc-------ChHHhhhhcccCccc-ccccccc---cCce
Q 039161           83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFP-------SMEAMKNVDEQGRLE-YMGRAFC---DESI  151 (333)
Q Consensus        83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~-------~l~~L~~l~~~~~~~-~~~~~~~---~~~~  151 (333)
                      ++++|.++.. +..+....+++|++|++++|.+++..|.. +.       .+.+|+.+++.++.. .++...+   ....
T Consensus       383 ~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~  460 (636)
T 4eco_A          383 SFAHNKLKYI-PNIFDAKSVSVMSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS  460 (636)
T ss_dssp             ECCSSCCSSC-CSCCCTTCSSCEEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCS
T ss_pred             EccCCcCccc-chhhhhcccCccCEEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCC
Confidence            8888887744 33432233446777777777777666544 22       444666666655431 1111111   0000


Q ss_pred             EEee--c---Ccchhhh-------hhhhccceEEccCcccCccchhhhh--CCCCCCEEEccCCcCCCCCccccccCCCC
Q 039161          152 TVAM--K---GHDFQLQ-------NIFVMFRAMDFSSNRFHGEISEVLG--NFKSLKVLNLSHNSLTGNIPVSFENMTAL  217 (333)
Q Consensus       152 ~~~~--~---~~~~~~~-------~~~~~L~~L~ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  217 (333)
                      ....  +   ..+....       ..+++|+.|++++|+++ .+|..+.  .+++|+.|++++|++++ +|..+..+++|
T Consensus       461 ~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L  538 (636)
T 4eco_A          461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL  538 (636)
T ss_dssp             EEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSC
T ss_pred             EEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCC
Confidence            1111  0   0111111       11338999999999999 6777776  89999999999999997 88889999999


Q ss_pred             cEEeC------CCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCCCCC
Q 039161          218 ESLDL------SFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTV  282 (333)
Q Consensus       218 ~~L~L------s~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~  282 (333)
                      +.|+|      ++|.+.+.+|..+..+++|+.|++++|++ +.+|....       .....+++.+||+.+
T Consensus       539 ~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-------~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-------PNISVLDIKDNPNIS  601 (636)
T ss_dssp             CEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-------TTCCEEECCSCTTCE
T ss_pred             CEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-------CcCCEEECcCCCCcc
Confidence            99999      56778888999999999999999999999 68887632       234556777777664

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=7.8e-28  Score=217.55  Aligned_cols=206  Identities=18%  Similarity=0.211  Sum_probs=177.2

Q ss_pred             CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161            2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI   81 (333)
Q Consensus         2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   81 (333)
                      +++ +|++|+|++|.+++..+..|.++++|++|+|++|+++...+..|..+++|++|+|++|.++...+..|..+++|++
T Consensus        86 ~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~  164 (440)
T 3zyj_A           86 HLR-HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR  164 (440)
T ss_dssp             SCS-SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             CCC-CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCE
Confidence            456 8999999999999999999999999999999999999777778999999999999999999777778999999999


Q ss_pred             EEcccC-cCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc-ccccccccCceEEeecCcc
Q 039161           82 LVLRSN-QFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGRAFCDESITVAMKGHD  159 (333)
Q Consensus        82 L~L~~n-~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~  159 (333)
                      |++++| .+....+..+  ..+++|++|++++|.++ .+|.  +..+++|+.|++.+|.. .+.                
T Consensus       165 L~l~~~~~l~~i~~~~~--~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~Ls~N~l~~~~----------------  223 (440)
T 3zyj_A          165 LDLGELKRLSYISEGAF--EGLSNLRYLNLAMCNLR-EIPN--LTPLIKLDELDLSGNHLSAIR----------------  223 (440)
T ss_dssp             EECCCCTTCCEECTTTT--TTCSSCCEEECTTSCCS-SCCC--CTTCSSCCEEECTTSCCCEEC----------------
T ss_pred             eCCCCCCCcceeCcchh--hcccccCeecCCCCcCc-cccc--cCCCcccCEEECCCCccCccC----------------
Confidence            999984 4555555555  78999999999999998 5553  67788888888877631 111                


Q ss_pred             hhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCC
Q 039161          160 FQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDG  229 (333)
Q Consensus       160 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  229 (333)
                      ......+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus       224 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence            1112237899999999999998889999999999999999999998888889999999999999999874

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=8.5e-28  Score=218.06  Aligned_cols=207  Identities=17%  Similarity=0.171  Sum_probs=177.3

Q ss_pred             CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161            2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI   81 (333)
Q Consensus         2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   81 (333)
                      +++ +|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|.++...+..|..+++|++
T Consensus        97 ~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  175 (452)
T 3zyi_A           97 HLH-HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR  175 (452)
T ss_dssp             TCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             CCC-CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccE
Confidence            456 8999999999999999999999999999999999999877788999999999999999999777778999999999


Q ss_pred             EEccc-CcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcch
Q 039161           82 LVLRS-NQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDF  160 (333)
Q Consensus        82 L~L~~-n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (333)
                      |++++ +.+....+..+  ..+++|++|++++|.+++ +|.  +..+++|+.+++.+|...               ....
T Consensus       176 L~l~~~~~l~~i~~~~~--~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~Ls~N~l~---------------~~~~  235 (452)
T 3zyi_A          176 LDLGELKKLEYISEGAF--EGLFNLKYLNLGMCNIKD-MPN--LTPLVGLEELEMSGNHFP---------------EIRP  235 (452)
T ss_dssp             EECCCCTTCCEECTTTT--TTCTTCCEEECTTSCCSS-CCC--CTTCTTCCEEECTTSCCS---------------EECG
T ss_pred             EeCCCCCCccccChhhc--cCCCCCCEEECCCCcccc-ccc--ccccccccEEECcCCcCc---------------ccCc
Confidence            99998 45555555555  789999999999999985 443  677888888888776311               0111


Q ss_pred             hhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCC
Q 039161          161 QLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDG  229 (333)
Q Consensus       161 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  229 (333)
                      .....+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|.+..
T Consensus       236 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            122337899999999999998889999999999999999999998888889999999999999999874

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=2.6e-28  Score=211.96  Aligned_cols=203  Identities=21%  Similarity=0.252  Sum_probs=182.4

Q ss_pred             CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccC-------
Q 039161            3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGS-------   75 (333)
Q Consensus         3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-------   75 (333)
                      ++ +|++|+|++|.++ .+|..|.++++|++|++++|.++ .+|..+.++++|++|++++|.+.+.+|..+..       
T Consensus       103 l~-~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~  179 (328)
T 4fcg_A          103 LS-HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH  179 (328)
T ss_dssp             GT-TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred             CC-CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence            45 8999999999999 78888999999999999999999 78999999999999999999888888877654       


Q ss_pred             --CCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEE
Q 039161           76 --LSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITV  153 (333)
Q Consensus        76 --l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~  153 (333)
                        +++|++|++++|+++..+ ..+  ..+++|++|++++|.+++ +|.. +.                            
T Consensus       180 ~~l~~L~~L~L~~n~l~~lp-~~l--~~l~~L~~L~L~~N~l~~-l~~~-l~----------------------------  226 (328)
T 4fcg_A          180 QGLVNLQSLRLEWTGIRSLP-ASI--ANLQNLKSLKIRNSPLSA-LGPA-IH----------------------------  226 (328)
T ss_dssp             EESTTCCEEEEEEECCCCCC-GGG--GGCTTCCEEEEESSCCCC-CCGG-GG----------------------------
T ss_pred             ccCCCCCEEECcCCCcCcch-Hhh--cCCCCCCEEEccCCCCCc-Cchh-hc----------------------------
Confidence              999999999999998543 344  789999999999999984 4432 11                            


Q ss_pred             eecCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCC
Q 039161          154 AMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE  233 (333)
Q Consensus       154 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  233 (333)
                                 .+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|+|++|.+.+.+|.
T Consensus       227 -----------~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~  295 (328)
T 4fcg_A          227 -----------HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS  295 (328)
T ss_dssp             -----------GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred             -----------cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence                       167899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccCccceeecccCcce
Q 039161          234 QLLSVTALALLNLSYNRLW  252 (333)
Q Consensus       234 ~~~~l~~L~~L~l~~N~l~  252 (333)
                      .+..+++++.+++..+.+.
T Consensus       296 ~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          296 LIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             GGGGSCTTCEEECCGGGSC
T ss_pred             HHhhccCceEEeCCHHHHH
Confidence            9999999999999988774

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.96  E-value=9.6e-28  Score=224.02  Aligned_cols=112  Identities=17%  Similarity=0.125  Sum_probs=65.2

Q ss_pred             CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161            3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL   82 (333)
Q Consensus         3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   82 (333)
                      +|+++++|++++|.+++..+.+|.++++|++|++++|++++..+.+|.++++|++|++++|.+++..+.+|..+++|++|
T Consensus        26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (570)
T 2z63_A           26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (570)
T ss_dssp             SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence            34456666666666666666666666666666666666665555666666666666666666665555555555666666


Q ss_pred             EcccCcCCCCCCCCCCcccCCcccEEEcCCCccc
Q 039161           83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFT  116 (333)
Q Consensus        83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~  116 (333)
                      ++++|++++..+..+  ..+++|++|++++|.++
T Consensus       106 ~L~~n~l~~l~~~~~--~~l~~L~~L~L~~n~l~  137 (570)
T 2z63_A          106 VAVETNLASLENFPI--GHLKTLKELNVAHNLIQ  137 (570)
T ss_dssp             ECTTSCCCCSTTCSC--TTCTTCCEEECCSSCCC
T ss_pred             cccccccccCCCccc--cccccccEEecCCCccc
Confidence            666555554443322  34444444444444443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=4.9e-28  Score=208.53  Aligned_cols=237  Identities=16%  Similarity=0.162  Sum_probs=190.1

Q ss_pred             CCcCcccEEECcCCccccc--cchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCccc-ccccCCCC
Q 039161            2 SFSTELITLHLENNSLEGH--IHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFP-CWMGSLSE   78 (333)
Q Consensus         2 ~l~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~   78 (333)
                      +++ +|++|+|++|.++..  .+..+.++++|++|++++|.++ .+|..+..+++|++|++++|.+++..+ ..+..+++
T Consensus        50 ~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  127 (306)
T 2z66_A           50 KLT-QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN  127 (306)
T ss_dssp             TCT-TCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTT
T ss_pred             ccc-cCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccC
Confidence            456 899999999999843  3677888999999999999998 577779999999999999999986654 57889999


Q ss_pred             CCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCc
Q 039161           79 LKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGH  158 (333)
Q Consensus        79 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~  158 (333)
                      |++|++++|.+.+..+..+  ..+++|++|++++|.+++......+..+++|+.+++.++...-               .
T Consensus       128 L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~---------------~  190 (306)
T 2z66_A          128 LIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ---------------L  190 (306)
T ss_dssp             CCEEECTTSCCEECSTTTT--TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE---------------E
T ss_pred             CCEEECCCCcCCccchhhc--ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCC---------------c
Confidence            9999999999988877766  7789999999999999863333447888999999988763110               0


Q ss_pred             chhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccC-CCCcEEeCCCCcCCCCCC--CCc
Q 039161          159 DFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENM-TALESLDLSFNKLDGRIP--EQL  235 (333)
Q Consensus       159 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~--~~~  235 (333)
                      .......+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+ ++|+.|++++|.+++...  ...
T Consensus       191 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~  270 (306)
T 2z66_A          191 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL  270 (306)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHH
T ss_pred             CHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHH
Confidence            11112236899999999999998777789999999999999999999999999988 499999999999986422  122


Q ss_pred             cccCccceeecccCcceecCCC
Q 039161          236 LSVTALALLNLSYNRLWGRIPR  257 (333)
Q Consensus       236 ~~l~~L~~L~l~~N~l~~~~p~  257 (333)
                      ..+...+.+.+..+.+.+..|.
T Consensus       271 ~~l~~~~~~~~~~~~~~C~~p~  292 (306)
T 2z66_A          271 QWIKDQRQLLVEVERMECATPS  292 (306)
T ss_dssp             HHHHHTGGGBSCGGGCBEEESG
T ss_pred             HHHHhhhhhhccccccccCCch
Confidence            3344555666667777766665

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=1.3e-27  Score=222.67  Aligned_cols=109  Identities=25%  Similarity=0.341  Sum_probs=87.4

Q ss_pred             CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161            3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL   82 (333)
Q Consensus         3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   82 (333)
                      +|+++++|++++|.+++..+..|.++++|++|++++|++++..|.+|.++++|++|++++|.++ .+|..  .+++|++|
T Consensus        50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L  126 (562)
T 3a79_B           50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHL  126 (562)
T ss_dssp             SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEE
T ss_pred             CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEE
Confidence            4567899999999998888888999999999999999998888888888999999999988888 45544  67888888


Q ss_pred             EcccCcCCCCC-CCCCCcccCCcccEEEcCCCccc
Q 039161           83 VLRSNQFDCPP-CNSNITFPFQALRIIDLSHTEFT  116 (333)
Q Consensus        83 ~L~~n~l~~~~-~~~~~~~~l~~L~~L~ls~n~l~  116 (333)
                      ++++|++++.. +..+  ..+++|++|++++|.++
T Consensus       127 ~Ls~N~l~~l~~p~~~--~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          127 DLSFNDFDVLPVCKEF--GNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             ECCSSCCSBCCCCGGG--GGCTTCCEEEEECSBCC
T ss_pred             ECCCCCccccCchHhh--cccCcccEEecCCCccc
Confidence            88888887654 3344  66777777777777665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.96  E-value=4.7e-28  Score=235.56  Aligned_cols=252  Identities=19%  Similarity=0.178  Sum_probs=172.8

Q ss_pred             CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCC-ChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161            3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPL-PRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI   81 (333)
Q Consensus         3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   81 (333)
                      +|+++++|+|++|.+++..+..|.++++|++|++++|...+.+ |.+|.++++|++|+|++|.+++..|.+|..+++|++
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  101 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE  101 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence            4568889999999998888888888888888888888554444 777888888888888888888777888888888888


Q ss_pred             EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc-cccccc--------------
Q 039161           82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGRAF--------------  146 (333)
Q Consensus        82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~~--------------  146 (333)
                      |+|++|.+++..+....+..+++|++|++++|.+++..+...+..+++|+.|++.++.. .+....              
T Consensus       102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L  181 (844)
T 3j0a_A          102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL  181 (844)
T ss_dssp             EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred             eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence            88888888775444422367888888888888887665544567777777777665421 000000              


Q ss_pred             -------------------ccC--ceEEeecCc--c----hh------------------------------------hh
Q 039161          147 -------------------CDE--SITVAMKGH--D----FQ------------------------------------LQ  163 (333)
Q Consensus       147 -------------------~~~--~~~~~~~~~--~----~~------------------------------------~~  163 (333)
                                         +..  .........  .    ..                                    +.
T Consensus       182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~  261 (844)
T 3j0a_A          182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA  261 (844)
T ss_dssp             CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred             CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence                               000  000000000  0    00                                    00


Q ss_pred             h-hhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccc
Q 039161          164 N-IFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALA  242 (333)
Q Consensus       164 ~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  242 (333)
                      . ..++|+.|++++|.+.+..+..+..+++|+.|+|++|.+++..+..|.++++|++|+|++|.+++..+..+..+++|+
T Consensus       262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  341 (844)
T 3j0a_A          262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA  341 (844)
T ss_dssp             TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred             ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence            0 025677777777777766677777777777777777777777777777777777777777777766677777777777


Q ss_pred             eeecccCcceec
Q 039161          243 LLNLSYNRLWGR  254 (333)
Q Consensus       243 ~L~l~~N~l~~~  254 (333)
                      .|++++|.+++.
T Consensus       342 ~L~L~~N~i~~~  353 (844)
T 3j0a_A          342 YIDLQKNHIAII  353 (844)
T ss_dssp             EEECCSCCCCCC
T ss_pred             EEECCCCCCCcc
Confidence            777777777543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=1.2e-27  Score=221.02  Aligned_cols=107  Identities=22%  Similarity=0.274  Sum_probs=71.1

Q ss_pred             cCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEE
Q 039161            4 STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILV   83 (333)
Q Consensus         4 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   83 (333)
                      ++++++|++++|.+++..|..|.++++|++|++++|++++..|..|.++++|++|+|++|+++ .+|..  .+++|++|+
T Consensus        20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~   96 (520)
T 2z7x_B           20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD   96 (520)
T ss_dssp             CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred             cccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence            346777777777777777777777777777777777777666777777777777777777776 34443  566677777


Q ss_pred             cccCcCCCC-CCCCCCcccCCcccEEEcCCCcc
Q 039161           84 LRSNQFDCP-PCNSNITFPFQALRIIDLSHTEF  115 (333)
Q Consensus        84 L~~n~l~~~-~~~~~~~~~l~~L~~L~ls~n~l  115 (333)
                      +++|.+++. .|..+  ..+++|++|++++|.+
T Consensus        97 L~~N~l~~~~~p~~~--~~l~~L~~L~L~~n~l  127 (520)
T 2z7x_B           97 LSFNAFDALPICKEF--GNMSQLKFLGLSTTHL  127 (520)
T ss_dssp             CCSSCCSSCCCCGGG--GGCTTCCEEEEEESSC
T ss_pred             ccCCccccccchhhh--ccCCcceEEEecCccc
Confidence            777666653 23333  4455555555555544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.95  E-value=3.2e-27  Score=224.98  Aligned_cols=248  Identities=20%  Similarity=0.163  Sum_probs=174.2

Q ss_pred             CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161            3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL   82 (333)
Q Consensus         3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   82 (333)
                      +|+++++|+|++|.+++..+..|.++++|++|++++|.+++..|.+|.++++|++|+|++|.+++..+..|..+++|++|
T Consensus        23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  102 (680)
T 1ziw_A           23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL  102 (680)
T ss_dssp             SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred             cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence            55689999999999998888889999999999999999998889999999999999999999996666679999999999


Q ss_pred             EcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc-ccccccc-----cCceEEeec
Q 039161           83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGRAFC-----DESITVAMK  156 (333)
Q Consensus        83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~~~-----~~~~~~~~~  156 (333)
                      ++++|.+++.++..+  ..+++|++|++++|.+++..+.. +..+++|+.+++.++.. .+....+     .........
T Consensus       103 ~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~  179 (680)
T 1ziw_A          103 HLMSNSIQKIKNNPF--VKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS  179 (680)
T ss_dssp             ECCSSCCCCCCSCTT--TTCTTCCEEECCSSCCSCCCCCS-SSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECT
T ss_pred             ECCCCccCccChhHc--cccCCCCEEECCCCcccccCchh-hcccccCCEEEccCCcccccCHHHhhccccccccEEECC
Confidence            999999988887776  78899999999999998665543 67788888888876531 1111000     000000000


Q ss_pred             -----Ccchhhhh---------------------------hhhccceEEccCcccCccchhhhhCCCC--CCEEEccCCc
Q 039161          157 -----GHDFQLQN---------------------------IFVMFRAMDFSSNRFHGEISEVLGNFKS--LKVLNLSHNS  202 (333)
Q Consensus       157 -----~~~~~~~~---------------------------~~~~L~~L~ls~n~l~~~~~~~~~~l~~--L~~L~Ls~n~  202 (333)
                           ........                           ..+.|+.|++++|.+++..|..+..++.  |++|++++|.
T Consensus       180 ~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~  259 (680)
T 1ziw_A          180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN  259 (680)
T ss_dssp             TCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred             CCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC
Confidence                 00000000                           0145666666666666555666655543  6666666666


Q ss_pred             CCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCccee
Q 039161          203 LTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG  253 (333)
Q Consensus       203 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~  253 (333)
                      +++..+..|+.+++|+.|++++|.+.+..|..+..+++|+.|++++|...+
T Consensus       260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~  310 (680)
T 1ziw_A          260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ  310 (680)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC
T ss_pred             cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhc
Confidence            666666666666666666666666666666666666666666666655443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.95  E-value=2.1e-28  Score=230.08  Aligned_cols=254  Identities=18%  Similarity=0.169  Sum_probs=170.2

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCCh--------------------hhcCCCCCcEEEccCCcC
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPR--------------------SLAKYIKLEVVNVENNMI   65 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~--------------------~~~~l~~L~~L~L~~n~l   65 (333)
                      +|+.|++++|.++. .| .+..+++|++|++++|.+ +.+|.                    .+..+++|++|++++|.+
T Consensus       286 ~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l  362 (606)
T 3vq2_A          286 NVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNAL  362 (606)
T ss_dssp             TCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCE
T ss_pred             CCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCcc
Confidence            45555555555542 22 444445555555555554 23331                    334555555666665555


Q ss_pred             CCc--ccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccc
Q 039161           66 SDS--FPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMG  143 (333)
Q Consensus        66 ~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~  143 (333)
                      ++.  .+..+..+++|++|++++|.+.+.+ ..+  ..+++|++|++++|.+.+..+...+..+++|+.+++..+...  
T Consensus       363 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~--  437 (606)
T 3vq2_A          363 SFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANF--MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK--  437 (606)
T ss_dssp             EEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCC--TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCE--
T ss_pred             CCCcchhhhhccCCcccEeECCCCccccch-hhc--cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCC--
Confidence            543  2455556666666666666655543 223  456666667776666665555344566666666666554311  


Q ss_pred             cccccCceEEeecCcchhhhhhhhccceEEccCcccCc-cchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeC
Q 039161          144 RAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHG-EISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDL  222 (333)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  222 (333)
                                   .........+++|++|++++|.+++ .+|..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus       438 -------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  504 (606)
T 3vq2_A          438 -------------IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM  504 (606)
T ss_dssp             -------------ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             -------------ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence                         0111122337889999999999987 47888999999999999999999888999999999999999


Q ss_pred             CCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccc-cccccCCCCCCCCCCCCC
Q 039161          223 SFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDS-YIGNIRLCGEPLTVRCSN  286 (333)
Q Consensus       223 s~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~-~~~~~~l~g~~~~~~C~~  286 (333)
                      ++|.+++..|..+..+++|+.|++++|+++ .+|..     +.... ....+.+.+||+.|+|..
T Consensus       505 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~-----~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGI-----LQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             CSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESC-----GGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             CCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHh-----HhhhcccCcEEEccCCCcccCCcc
Confidence            999999888999999999999999999998 66654     22222 245678899999999974

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.95  E-value=8.6e-29  Score=233.43  Aligned_cols=249  Identities=20%  Similarity=0.257  Sum_probs=181.9

Q ss_pred             CCcCcccEEECcCCccccc-----------------cchhhh--CCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccC
Q 039161            2 SFSTELITLHLENNSLEGH-----------------IHNTFA--NASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVEN   62 (333)
Q Consensus         2 ~l~~~L~~L~L~~n~l~~~-----------------~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~   62 (333)
                      +++ +|++|+|++|.+++.                 +|..++  ++++|++|++++|.+.+.+|..|.++++|++|++++
T Consensus       204 ~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  282 (636)
T 4eco_A          204 RLT-KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC  282 (636)
T ss_dssp             GCT-TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred             ccc-CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence            455 799999999999985                 888888  999999999999999999999999999999999999


Q ss_pred             Cc-CCC-cccccccCC------CCCCEEEcccCcCCCCCCC--CCCcccCCcccEEEcCCCcccccCCcccccChHHhhh
Q 039161           63 NM-ISD-SFPCWMGSL------SELKILVLRSNQFDCPPCN--SNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKN  132 (333)
Q Consensus        63 n~-l~~-~~~~~~~~l------~~L~~L~L~~n~l~~~~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~  132 (333)
                      |+ +++ .+|..++.+      ++|++|++++|+++.. |.  .+  ..+++|++|++++|.++|.+|  .+..+++|+.
T Consensus       283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i-p~~~~l--~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~  357 (636)
T 4eco_A          283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF-PVETSL--QKMKKLGMLECLYNQLEGKLP--AFGSEIKLAS  357 (636)
T ss_dssp             CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC-CCHHHH--TTCTTCCEEECCSCCCEEECC--CCEEEEEESE
T ss_pred             CCCCccccchHHHHhhhccccCCCCCEEECCCCcCCcc-Cchhhh--ccCCCCCEEeCcCCcCccchh--hhCCCCCCCE
Confidence            98 887 788877776      8999999999999844 43  34  678899999999999998888  4778888888


Q ss_pred             hcccCcccc-cccccc-----cCceEEeecC---cchhhhh-hhhccceEEccCcccCccchhhhh-------CCCCCCE
Q 039161          133 VDEQGRLEY-MGRAFC-----DESITVAMKG---HDFQLQN-IFVMFRAMDFSSNRFHGEISEVLG-------NFKSLKV  195 (333)
Q Consensus       133 l~~~~~~~~-~~~~~~-----~~~~~~~~~~---~~~~~~~-~~~~L~~L~ls~n~l~~~~~~~~~-------~l~~L~~  195 (333)
                      +++.++... ++....     .....+..+.   .+..+.. .+++|+.|++++|.+++..|..+.       .+++|++
T Consensus       358 L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~  437 (636)
T 4eco_A          358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS  437 (636)
T ss_dssp             EECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred             EECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence            888776422 111110     0011111111   1111111 023678888888888777777776       6677888


Q ss_pred             EEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCC-CccccC-------ccceeecccCcceecCCCC
Q 039161          196 LNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE-QLLSVT-------ALALLNLSYNRLWGRIPRG  258 (333)
Q Consensus       196 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~-------~L~~L~l~~N~l~~~~p~~  258 (333)
                      |++++|.++...+..+..+++|+.|+|++|.++ .+|. .+....       +|+.|++++|+++ .+|..
T Consensus       438 L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~  506 (636)
T 4eco_A          438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDD  506 (636)
T ss_dssp             EECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGG
T ss_pred             EECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChh
Confidence            888888888544445566788888888888888 4444 333222       7888888888887 66654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.95  E-value=7.6e-27  Score=197.39  Aligned_cols=207  Identities=21%  Similarity=0.274  Sum_probs=175.3

Q ss_pred             CcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEc
Q 039161            5 TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVL   84 (333)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   84 (333)
                      ...++++++++.++. +|..+.  +++++|++++|++++..+.+|.++++|++|++++|.++...+..|..+++|++|++
T Consensus        16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            357899999999984 454443  67999999999999777778999999999999999999766667788999999999


Q ss_pred             ccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhh
Q 039161           85 RSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQN  164 (333)
Q Consensus        85 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (333)
                      ++|++++.++..+  ..+++|++|++++|.+++..+.. +..                                      
T Consensus        93 ~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-~~~--------------------------------------  131 (270)
T 2o6q_A           93 TDNKLQALPIGVF--DQLVNLAELRLDRNQLKSLPPRV-FDS--------------------------------------  131 (270)
T ss_dssp             CSSCCCCCCTTTT--TTCSSCCEEECCSSCCCCCCTTT-TTT--------------------------------------
T ss_pred             CCCcCCcCCHhHc--ccccCCCEEECCCCccCeeCHHH-hCc--------------------------------------
Confidence            9999998887666  77899999999999988543322 221                                      


Q ss_pred             hhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCcccee
Q 039161          165 IFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL  244 (333)
Q Consensus       165 ~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  244 (333)
                       +++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|
T Consensus       132 -l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  210 (270)
T 2o6q_A          132 -LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML  210 (270)
T ss_dssp             -CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             -CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence             6788999999999997777778999999999999999998877889999999999999999997777778889999999


Q ss_pred             ecccCcceecCC
Q 039161          245 NLSYNRLWGRIP  256 (333)
Q Consensus       245 ~l~~N~l~~~~p  256 (333)
                      ++++|++.+..+
T Consensus       211 ~l~~N~~~c~c~  222 (270)
T 2o6q_A          211 QLQENPWDCTCN  222 (270)
T ss_dssp             ECCSSCBCCSSS
T ss_pred             EecCCCeeCCCc
Confidence            999999975443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.95  E-value=1.8e-27  Score=211.94  Aligned_cols=239  Identities=18%  Similarity=0.088  Sum_probs=172.3

Q ss_pred             CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161            2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI   81 (333)
Q Consensus         2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   81 (333)
                      .++ +|++|++++|.+++..|..|.++++|++|++++|.++...+..|.++++|++|++++|.+++..+..+..+++|++
T Consensus        91 ~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  169 (390)
T 3o6n_A           91 YAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN  169 (390)
T ss_dssp             TCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCE
T ss_pred             CCC-CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCE
Confidence            345 8999999999999999999999999999999999999665566799999999999999999888888999999999


Q ss_pred             EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccc------------------cCCcccccChHHhhhhcccCcccccc
Q 039161           82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTG------------------FLPRRIFPSMEAMKNVDEQGRLEYMG  143 (333)
Q Consensus        82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~------------------~~~~~~~~~l~~L~~l~~~~~~~~~~  143 (333)
                      |++++|.+++...     ..+++|+.+++++|.+++                  .+|..   ..++|+.+++.++...-.
T Consensus       170 L~l~~n~l~~~~~-----~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~  241 (390)
T 3o6n_A          170 LQLSSNRLTHVDL-----SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT  241 (390)
T ss_dssp             EECCSSCCSBCCG-----GGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC
T ss_pred             EECCCCcCCcccc-----ccccccceeecccccccccCCCCcceEEECCCCeeeecccc---ccccccEEECCCCCCccc
Confidence            9999999886542     233444444433333321                  11111   112333344333321100


Q ss_pred             c----ccccCceEEeec---CcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCC
Q 039161          144 R----AFCDESITVAMK---GHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTA  216 (333)
Q Consensus       144 ~----~~~~~~~~~~~~---~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  216 (333)
                      .    ........+..+   .........+++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|..+..+++
T Consensus       242 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~  319 (390)
T 3o6n_A          242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR  319 (390)
T ss_dssp             GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTT
T ss_pred             HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCc
Confidence            0    000000011111   111222334789999999999998 45666778999999999999999 56777888999


Q ss_pred             CcEEeCCCCcCCCCCCCCccccCccceeecccCcceec
Q 039161          217 LESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGR  254 (333)
Q Consensus       217 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  254 (333)
                      |+.|++++|.++.. +  +..+++|+.|++++|++.+.
T Consensus       320 L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          320 LENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             CCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence            99999999999854 3  67788999999999999854

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=1.5e-27  Score=221.74  Aligned_cols=117  Identities=23%  Similarity=0.338  Sum_probs=70.6

Q ss_pred             hhccceEEccCcccCccch--hhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCC---------
Q 039161          166 FVMFRAMDFSSNRFHGEIS--EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQ---------  234 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---------  234 (333)
                      +++|++|++++|++++..+  ..+..+++|++|++++|+++ .+|..+..+++|++|++++|.++. +|..         
T Consensus       360 l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~  437 (549)
T 2z81_A          360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCIPQTLEVLD  437 (549)
T ss_dssp             STTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTSCTTCSEEE
T ss_pred             cccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchhcCCceEEE
Confidence            4677788888887774432  45777888888888888877 456666666666666666665542 1111         


Q ss_pred             ---------ccccCccceeecccCcceecCCCCCccC------------------CccccccccccCCCCCCCCCCCC
Q 039161          235 ---------LLSVTALALLNLSYNRLWGRIPRGNQFN------------------TFQNDSYIGNIRLCGEPLTVRCS  285 (333)
Q Consensus       235 ---------~~~l~~L~~L~l~~N~l~~~~p~~~~~~------------------~~~~~~~~~~~~l~g~~~~~~C~  285 (333)
                               ...+++|+.|++++|+++ .+|....+.                  .+........+++.+||+.|+|+
T Consensus       438 Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          438 VSNNNLDSFSLFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CCSSCCSCCCCCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CCCCChhhhcccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence                     113455566666666655 444321111                  22333344566888999998886

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=1e-27  Score=224.68  Aligned_cols=263  Identities=18%  Similarity=0.097  Sum_probs=186.0

Q ss_pred             CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161            2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI   81 (333)
Q Consensus         2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   81 (333)
                      .++ +|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|..+++|++
T Consensus        97 ~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  175 (597)
T 3oja_B           97 YAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN  175 (597)
T ss_dssp             TCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred             CCC-CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcE
Confidence            455 8999999999999999999999999999999999999766777899999999999999999888889999999999


Q ss_pred             EEcccCcCCCCCCCCCCcccCCcccEEEcCCCccccc------------------CCcccccChHHhhhhcccCcccccc
Q 039161           82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGF------------------LPRRIFPSMEAMKNVDEQGRLEYMG  143 (333)
Q Consensus        82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~------------------~~~~~~~~l~~L~~l~~~~~~~~~~  143 (333)
                      |++++|.+++...     ..+++|+.|++++|.+++.                  ++...   ..+|+.+++.++...-.
T Consensus       176 L~L~~N~l~~~~~-----~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~  247 (597)
T 3oja_B          176 LQLSSNRLTHVDL-----SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT  247 (597)
T ss_dssp             EECTTSCCSBCCG-----GGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC
T ss_pred             EECcCCCCCCcCh-----hhhhhhhhhhcccCccccccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC
Confidence            9999999987642     2334444444444433321                  11110   11233333333221100


Q ss_pred             ----cccccCceEEeec---CcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCC
Q 039161          144 ----RAFCDESITVAMK---GHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTA  216 (333)
Q Consensus       144 ----~~~~~~~~~~~~~---~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  216 (333)
                          .........+..+   +........+++|+.|++++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++
T Consensus       248 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~  325 (597)
T 3oja_B          248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR  325 (597)
T ss_dssp             GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTT
T ss_pred             hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCC
Confidence                0000000011111   1112223347899999999999995 5666778999999999999999 67778899999


Q ss_pred             CcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCC
Q 039161          217 LESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEP  279 (333)
Q Consensus       217 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~  279 (333)
                      |+.|+|++|.+++. +  +..+++|+.|++++|++.+..+.. .+..+....+.++...|+.+
T Consensus       326 L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~-~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          326 LENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRA-LFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             CSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHH-HTTTCCTTTBCCCCCCCCTT
T ss_pred             CCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHHH-HHHHHhhhccccccccCCcc
Confidence            99999999999854 3  567889999999999998654322 23344444555666677653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=4.5e-27  Score=204.64  Aligned_cols=225  Identities=19%  Similarity=0.227  Sum_probs=186.5

Q ss_pred             CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161            2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI   81 (333)
Q Consensus         2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   81 (333)
                      +++ +|++|+|++|.+++..|..|.++++|++|++++|.++ .+|..+.  ++|++|++++|.+++..+..+..+++|++
T Consensus        74 ~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  149 (330)
T 1xku_A           74 NLK-NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIV  149 (330)
T ss_dssp             TCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCE
T ss_pred             cCC-CCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccE
Confidence            456 8999999999999888999999999999999999998 5665543  79999999999999887788999999999


Q ss_pred             EEcccCcCCC--CCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcc
Q 039161           82 LVLRSNQFDC--PPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHD  159 (333)
Q Consensus        82 L~L~~n~l~~--~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (333)
                      |++++|.+..  ..+..+  ..+++|++|++++|.++ .+|..++   ++|+.+++.++...               ...
T Consensus       150 L~l~~n~l~~~~~~~~~~--~~l~~L~~L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~l~---------------~~~  208 (330)
T 1xku_A          150 VELGTNPLKSSGIENGAF--QGMKKLSYIRIADTNIT-TIPQGLP---PSLTELHLDGNKIT---------------KVD  208 (330)
T ss_dssp             EECCSSCCCGGGBCTTGG--GGCTTCCEEECCSSCCC-SCCSSCC---TTCSEEECTTSCCC---------------EEC
T ss_pred             EECCCCcCCccCcChhhc--cCCCCcCEEECCCCccc-cCCcccc---ccCCEEECCCCcCC---------------ccC
Confidence            9999999864  444444  78999999999999998 4665543   57777777665311               001


Q ss_pred             hhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccc--
Q 039161          160 FQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS--  237 (333)
Q Consensus       160 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--  237 (333)
                      ......+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..|..  
T Consensus       209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~  287 (330)
T 1xku_A          209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG  287 (330)
T ss_dssp             TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS
T ss_pred             HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcc
Confidence            112223789999999999999888888999999999999999999 77888999999999999999999776666643  


Q ss_pred             ----cCccceeecccCcce
Q 039161          238 ----VTALALLNLSYNRLW  252 (333)
Q Consensus       238 ----l~~L~~L~l~~N~l~  252 (333)
                          ...++.+++++|++.
T Consensus       288 ~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          288 YNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             CCTTSCCCSEEECCSSSSC
T ss_pred             cccccccccceEeecCccc
Confidence                367889999999986

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.95  E-value=8.2e-27  Score=197.87  Aligned_cols=226  Identities=21%  Similarity=0.259  Sum_probs=185.2

Q ss_pred             EEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCc
Q 039161            9 TLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQ   88 (333)
Q Consensus         9 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~   88 (333)
                      +.+-.+..++ .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|+
T Consensus        11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            4556666666 4454443  579999999999998777789999999999999999997777789999999999999999


Q ss_pred             CCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhc
Q 039161           89 FDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVM  168 (333)
Q Consensus        89 l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (333)
                      +++..+..+  ..+++|++|++++|.+++..+.. +..                                       +++
T Consensus        88 l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-~~~---------------------------------------l~~  125 (276)
T 2z62_A           88 IQSLALGAF--SGLSSLQKLVAVETNLASLENFP-IGH---------------------------------------LKT  125 (276)
T ss_dssp             CCEECTTTT--TTCTTCCEEECTTSCCCCSTTCC-CTT---------------------------------------CTT
T ss_pred             cCccChhhh--cCCccccEEECCCCCccccCchh-ccc---------------------------------------CCC
Confidence            998887776  78999999999999988543322 111                                       678


Q ss_pred             cceEEccCcccCcc-chhhhhCCCCCCEEEccCCcCCCCCccccccCCCCc----EEeCCCCcCCCCCCCCccccCccce
Q 039161          169 FRAMDFSSNRFHGE-ISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALE----SLDLSFNKLDGRIPEQLLSVTALAL  243 (333)
Q Consensus       169 L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~Ls~n~l~~~~~~~~~~l~~L~~  243 (333)
                      |++|++++|.+++. +|..+..+++|++|++++|++++..+..+..+++|+    +|++++|.+++..+..+.. .+|+.
T Consensus       126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~  204 (276)
T 2z62_A          126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKE  204 (276)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEE
T ss_pred             CCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccE
Confidence            99999999999864 588999999999999999999988888888777777    8999999999665655544 48999


Q ss_pred             eecccCcceecCCCCCccCCccccccccccCCCCCCCCCCCC
Q 039161          244 LNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCS  285 (333)
Q Consensus       244 L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C~  285 (333)
                      |++++|.+++ +|..    .|........+.+.+||+.|+|.
T Consensus       205 L~L~~n~l~~-~~~~----~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          205 LALDTNQLKS-VPDG----IFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             EECCSSCCSC-CCTT----TTTTCCSCCEEECCSSCBCCCTT
T ss_pred             EECCCCceee-cCHh----HhcccccccEEEccCCcccccCC
Confidence            9999999984 4433    34444555677899999999996

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=9.1e-28  Score=210.98  Aligned_cols=236  Identities=15%  Similarity=0.143  Sum_probs=192.3

Q ss_pred             CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCccc-ccccCCCCCC
Q 039161            2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFP-CWMGSLSELK   80 (333)
Q Consensus         2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~   80 (333)
                      +++ +|++|++++|.+++..+..|.++++|++|++++|++++..+..|.++++|++|++++|++++..+ ..+..+++|+
T Consensus        74 ~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~  152 (353)
T 2z80_A           74 RCV-NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ  152 (353)
T ss_dssp             TCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred             cCC-CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence            456 89999999999999889999999999999999999997666669999999999999999996444 4788999999


Q ss_pred             EEEcccC-cCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcc
Q 039161           81 ILVLRSN-QFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHD  159 (333)
Q Consensus        81 ~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (333)
                      +|++++| .+....+..+  ..+++|++|++++|.+++..|.. +..+++|+.+++..+..               ....
T Consensus       153 ~L~l~~n~~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l---------------~~~~  214 (353)
T 2z80_A          153 ILRVGNMDTFTKIQRKDF--AGLTFLEELEIDASDLQSYEPKS-LKSIQNVSHLILHMKQH---------------ILLL  214 (353)
T ss_dssp             EEEEEESSSCCEECTTTT--TTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSCS---------------TTHH
T ss_pred             EEECCCCccccccCHHHc--cCCCCCCEEECCCCCcCccCHHH-HhccccCCeecCCCCcc---------------ccch
Confidence            9999999 4776666666  78899999999999999766654 77788888888766531               1112


Q ss_pred             hhhhhhhhccceEEccCcccCccchhhh---hCCCCCCEEEccCCcCCC----CCccccccCCCCcEEeCCCCcCCCCCC
Q 039161          160 FQLQNIFVMFRAMDFSSNRFHGEISEVL---GNFKSLKVLNLSHNSLTG----NIPVSFENMTALESLDLSFNKLDGRIP  232 (333)
Q Consensus       160 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~  232 (333)
                      ......+++|+.|++++|.+++..+..+   ...+.++.++++++.+++    .+|..+..+++|+.|++++|.++...+
T Consensus       215 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~  294 (353)
T 2z80_A          215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD  294 (353)
T ss_dssp             HHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT
T ss_pred             hhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH
Confidence            2233447899999999999986654443   346779999999999885    367778899999999999999994444


Q ss_pred             CCccccCccceeecccCcceecCC
Q 039161          233 EQLLSVTALALLNLSYNRLWGRIP  256 (333)
Q Consensus       233 ~~~~~l~~L~~L~l~~N~l~~~~p  256 (333)
                      ..+..+++|+.|++++|++++..|
T Consensus       295 ~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          295 GIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             HHHhcCCCCCEEEeeCCCccCcCC
Confidence            446899999999999999987665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=8.4e-27  Score=203.10  Aligned_cols=224  Identities=16%  Similarity=0.216  Sum_probs=184.8

Q ss_pred             CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161            2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI   81 (333)
Q Consensus         2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   81 (333)
                      +++ +|++|++++|.+++..|..|.++++|++|++++|.++ .+|..+.  ++|++|++++|.+++..+..|..+++|++
T Consensus        76 ~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~  151 (332)
T 2ft3_A           76 GLQ-HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNC  151 (332)
T ss_dssp             TCT-TCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCE
T ss_pred             CCC-CCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCE
Confidence            456 8999999999999998999999999999999999999 5665554  79999999999999777778999999999


Q ss_pred             EEcccCcCCC--CCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcc
Q 039161           82 LVLRSNQFDC--PPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHD  159 (333)
Q Consensus        82 L~L~~n~l~~--~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (333)
                      |++++|.++.  ..+..+  ..+ +|++|++++|.+++ +|..++   ++|+.+++.++...               ...
T Consensus       152 L~l~~n~l~~~~~~~~~~--~~l-~L~~L~l~~n~l~~-l~~~~~---~~L~~L~l~~n~i~---------------~~~  209 (332)
T 2ft3_A          152 IEMGGNPLENSGFEPGAF--DGL-KLNYLRISEAKLTG-IPKDLP---ETLNELHLDHNKIQ---------------AIE  209 (332)
T ss_dssp             EECCSCCCBGGGSCTTSS--CSC-CCSCCBCCSSBCSS-CCSSSC---SSCSCCBCCSSCCC---------------CCC
T ss_pred             EECCCCccccCCCCcccc--cCC-ccCEEECcCCCCCc-cCcccc---CCCCEEECCCCcCC---------------ccC
Confidence            9999999964  555544  455 99999999999984 665544   56777777665311               111


Q ss_pred             hhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccc--
Q 039161          160 FQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS--  237 (333)
Q Consensus       160 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--  237 (333)
                      ......+++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.+++..+..+..  
T Consensus       210 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~  288 (332)
T 2ft3_A          210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG  288 (332)
T ss_dssp             TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSS
T ss_pred             HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccc
Confidence            111223688999999999999888888999999999999999999 77888999999999999999999777766654  


Q ss_pred             ----cCccceeecccCcce
Q 039161          238 ----VTALALLNLSYNRLW  252 (333)
Q Consensus       238 ----l~~L~~L~l~~N~l~  252 (333)
                          ...++.+++++|++.
T Consensus       289 ~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          289 FGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CCSSSCCBSEEECCSSSSC
T ss_pred             cccccccccceEeecCccc
Confidence                366899999999986

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.95  E-value=3.3e-26  Score=193.42  Aligned_cols=207  Identities=22%  Similarity=0.344  Sum_probs=175.9

Q ss_pred             CCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEE
Q 039161           29 SHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRII  108 (333)
Q Consensus        29 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L  108 (333)
                      .+.++++++++.++ .+|..+.  +++++|++++|.+++..+..|..+++|++|++++|.++..++..+  ..+++|++|
T Consensus        16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~--~~l~~L~~L   90 (270)
T 2o6q_A           16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF--KELKNLETL   90 (270)
T ss_dssp             TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTT--SSCTTCCEE
T ss_pred             CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhh--cCCCCCCEE
Confidence            45789999999999 5676554  589999999999998777789999999999999999998887766  779999999


Q ss_pred             EcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhhh
Q 039161          109 DLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLG  188 (333)
Q Consensus       109 ~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~  188 (333)
                      ++++|.+++ ++...+..                                       +++|++|++++|.+++..+..|.
T Consensus        91 ~l~~n~l~~-~~~~~~~~---------------------------------------l~~L~~L~l~~n~l~~~~~~~~~  130 (270)
T 2o6q_A           91 WVTDNKLQA-LPIGVFDQ---------------------------------------LVNLAELRLDRNQLKSLPPRVFD  130 (270)
T ss_dssp             ECCSSCCCC-CCTTTTTT---------------------------------------CSSCCEEECCSSCCCCCCTTTTT
T ss_pred             ECCCCcCCc-CCHhHccc---------------------------------------ccCCCEEECCCCccCeeCHHHhC
Confidence            999999984 33332222                                       67899999999999988888899


Q ss_pred             CCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccc
Q 039161          189 NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDS  268 (333)
Q Consensus       189 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~  268 (333)
                      .+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|++++ +|..    .|....
T Consensus       131 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~----~~~~l~  205 (270)
T 2o6q_A          131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEG----AFDSLE  205 (270)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC-CCTT----TTTTCT
T ss_pred             cCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc-CCHH----Hhcccc
Confidence            99999999999999998777789999999999999999998777789999999999999999984 4433    344444


Q ss_pred             cccccCCCCCCCCCCCC
Q 039161          269 YIGNIRLCGEPLTVRCS  285 (333)
Q Consensus       269 ~~~~~~l~g~~~~~~C~  285 (333)
                      ....+.+.+||+.|+|.
T Consensus       206 ~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          206 KLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TCCEEECCSSCBCCSSS
T ss_pred             CCCEEEecCCCeeCCCc
Confidence            55667899999999996

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=3.5e-28  Score=209.87  Aligned_cols=224  Identities=27%  Similarity=0.363  Sum_probs=147.4

Q ss_pred             cccEEECcCCccc-cccchhhh-------CCCCccEEECCCCcCcCCCChhh--cCCCCCcEEEccCCcCCCcccccccC
Q 039161            6 ELITLHLENNSLE-GHIHNTFA-------NASHLRSLDLYSNKLEGPLPRSL--AKYIKLEVVNVENNMISDSFPCWMGS   75 (333)
Q Consensus         6 ~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~   75 (333)
                      .+++|+|++|.++ ...|..+.       ++++|++|++++|++++.+|..+  ..+++|++|++++|.+++. |..+..
T Consensus        64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~  142 (312)
T 1wwl_A           64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAE  142 (312)
T ss_dssp             HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHH
T ss_pred             HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHH
Confidence            3667777777773 34454444       67788888888888877777765  6777888888888887765 666655


Q ss_pred             C-----CCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCC--cc-cccChHHhhhhcccCcccccccccc
Q 039161           76 L-----SELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLP--RR-IFPSMEAMKNVDEQGRLEYMGRAFC  147 (333)
Q Consensus        76 l-----~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~--~~-~~~~l~~L~~l~~~~~~~~~~~~~~  147 (333)
                      +     ++|++|++++|++.+..+..+  ..+++|++|++++|.+.+..+  .. .+..                     
T Consensus       143 l~~~~~~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~---------------------  199 (312)
T 1wwl_A          143 LQQWLKPGLKVLSIAQAHSLNFSCEQV--RVFPALSTLDLSDNPELGERGLISALCPLK---------------------  199 (312)
T ss_dssp             HHTTCCTTCCEEEEESCSCCCCCTTTC--CCCSSCCEEECCSCTTCHHHHHHHHSCTTS---------------------
T ss_pred             HHHhhcCCCcEEEeeCCCCccchHHHh--ccCCCCCEEECCCCCcCcchHHHHHHHhcc---------------------
Confidence            5     778888888888877776666  667788888888877654321  11 0122                     


Q ss_pred             cCceEEeecCcchhhhhhhhccceEEccCcccCc---cchhhhhCCCCCCEEEccCCcCCCCCc-cccccCCCCcEEeCC
Q 039161          148 DESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHG---EISEVLGNFKSLKVLNLSHNSLTGNIP-VSFENMTALESLDLS  223 (333)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls  223 (333)
                                        +++|++|++++|++++   .....+..+++|++|++++|.+++..| ..+..+++|+.|+|+
T Consensus       200 ------------------l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls  261 (312)
T 1wwl_A          200 ------------------FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS  261 (312)
T ss_dssp             ------------------CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECT
T ss_pred             ------------------CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECC
Confidence                              5677777777777762   112334566777777777777776554 445566777777777


Q ss_pred             CCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCCCC
Q 039161          224 FNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLT  281 (333)
Q Consensus       224 ~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~  281 (333)
                      +|.++ .+|..+.  ++|+.|++++|++++. |.      +........+++.+|+++
T Consensus       262 ~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~------~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          262 FTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS------PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             TSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC------TTTSCEEEEEECTTCTTT
T ss_pred             CCccC-hhhhhcc--CCceEEECCCCCCCCC-hh------HhhCCCCCEEeccCCCCC
Confidence            77777 5666554  6777777777777643 43      222233344566666654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=2.9e-27  Score=218.35  Aligned_cols=248  Identities=23%  Similarity=0.231  Sum_probs=157.0

Q ss_pred             CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCC-cccccccCCCCCC
Q 039161            2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISD-SFPCWMGSLSELK   80 (333)
Q Consensus         2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~   80 (333)
                      .++ +|++|+|++|++++..|..|+++++|++|++++|+++ .+|..  .+++|++|++++|.+++ ..|..|..+++|+
T Consensus        43 ~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~  118 (520)
T 2z7x_B           43 SLS-KLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLK  118 (520)
T ss_dssp             TCT-TCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCC
T ss_pred             ccc-cccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcce
Confidence            355 7888888888888888888888888888888888888 45554  78888888888888886 3677888888888


Q ss_pred             EEEcccCcCCCCCCCCCCcccCCcc--cEEEcCCCcc--cccCCccc-------------------------ccChHHhh
Q 039161           81 ILVLRSNQFDCPPCNSNITFPFQAL--RIIDLSHTEF--TGFLPRRI-------------------------FPSMEAMK  131 (333)
Q Consensus        81 ~L~L~~n~l~~~~~~~~~~~~l~~L--~~L~ls~n~l--~~~~~~~~-------------------------~~~l~~L~  131 (333)
                      +|++++|.+++.   .+  ..+++|  ++|++++|.+  .+..|..+                         +..++.|+
T Consensus       119 ~L~L~~n~l~~~---~~--~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~  193 (520)
T 2z7x_B          119 FLGLSTTHLEKS---SV--LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE  193 (520)
T ss_dssp             EEEEEESSCCGG---GG--GGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEE
T ss_pred             EEEecCcccchh---hc--cccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhccccee
Confidence            888888887752   22  556677  8888888877  44444331                         12234444


Q ss_pred             hhcccCcc---------------cccc---------------------cc---cccCceEEe---ecC-c----------
Q 039161          132 NVDEQGRL---------------EYMG---------------------RA---FCDESITVA---MKG-H----------  158 (333)
Q Consensus       132 ~l~~~~~~---------------~~~~---------------------~~---~~~~~~~~~---~~~-~----------  158 (333)
                      .+++..+.               ....                     ..   .......+.   ..+ .          
T Consensus       194 ~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~  273 (520)
T 2z7x_B          194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT  273 (520)
T ss_dssp             ECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSC
T ss_pred             eccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccc
Confidence            44433321               0000                     00   000000000   000 0          


Q ss_pred             -----------------c-hhh------------------------hhhhhccceEEccCcccCccchhhhhCCCCCCEE
Q 039161          159 -----------------D-FQL------------------------QNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVL  196 (333)
Q Consensus       159 -----------------~-~~~------------------------~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L  196 (333)
                                       + ..+                        ...++.|++|++++|++++..|..+..+++|++|
T Consensus       274 ~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  353 (520)
T 2z7x_B          274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL  353 (520)
T ss_dssp             CCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEE
T ss_pred             cCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEE
Confidence                             0 000                        0234567777777777776666667777777777


Q ss_pred             EccCCcCCC--CCccccccCCCCcEEeCCCCcCCCCCCC-CccccCccceeecccCcceecCCCC
Q 039161          197 NLSHNSLTG--NIPVSFENMTALESLDLSFNKLDGRIPE-QLLSVTALALLNLSYNRLWGRIPRG  258 (333)
Q Consensus       197 ~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~  258 (333)
                      ++++|++++  .+|..+..+++|++|++++|.+++.+|. .+..+++|+.|++++|.+++.+|..
T Consensus       354 ~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  418 (520)
T 2z7x_B          354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC  418 (520)
T ss_dssp             ECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGS
T ss_pred             EccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhh
Confidence            777777775  3445667777777777777777763443 3666677777777777776655543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=1.2e-26  Score=223.38  Aligned_cols=263  Identities=14%  Similarity=0.157  Sum_probs=184.4

Q ss_pred             CcCcccEEECcCCccccccch--hhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCC-C
Q 039161            3 FSTELITLHLENNSLEGHIHN--TFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSE-L   79 (333)
Q Consensus         3 l~~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L   79 (333)
                      +| +|++|+|++|.++ .+|.  .|.++++|++|++++|.++ .+| .|..+++|++|+|++|.++ .+|..+..+++ |
T Consensus       547 l~-~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L  621 (876)
T 4ecn_A          547 GP-KIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQV  621 (876)
T ss_dssp             TT-TCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTC
T ss_pred             cC-CccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccC
Confidence            44 8999999999999 6676  8999999999999999998 777 8889999999999999998 78888888888 9


Q ss_pred             CEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCccc--cc--ChHHhhhhcccCccc-ccccccc---cCce
Q 039161           80 KILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRI--FP--SMEAMKNVDEQGRLE-YMGRAFC---DESI  151 (333)
Q Consensus        80 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~--~~--~l~~L~~l~~~~~~~-~~~~~~~---~~~~  151 (333)
                      ++|++++|.++.. +..+.....++|+.|++++|.+++.+|...  ..  .+.+|+.+++.++.. .++...+   ....
T Consensus       622 ~~L~Ls~N~L~~l-p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~  700 (876)
T 4ecn_A          622 EGLGFSHNKLKYI-PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS  700 (876)
T ss_dssp             CEEECCSSCCCSC-CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCS
T ss_pred             CEEECcCCCCCcC-chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCC
Confidence            9999999998844 344422333458888888888776554211  11  223566666655431 1111110   0000


Q ss_pred             EEee--c---Ccchhhh-------hhhhccceEEccCcccCccchhhhh--CCCCCCEEEccCCcCCCCCccccccCCCC
Q 039161          152 TVAM--K---GHDFQLQ-------NIFVMFRAMDFSSNRFHGEISEVLG--NFKSLKVLNLSHNSLTGNIPVSFENMTAL  217 (333)
Q Consensus       152 ~~~~--~---~~~~~~~-------~~~~~L~~L~ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  217 (333)
                      .+..  +   ..+....       ..+++|+.|++++|+++ .+|..+.  .+++|+.|+|++|.+++ +|..+..+++|
T Consensus       701 ~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L  778 (876)
T 4ecn_A          701 TIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQL  778 (876)
T ss_dssp             EEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTC
T ss_pred             EEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCC
Confidence            0110  0   1111111       11348888999998888 6777776  88889999999998886 67788888899


Q ss_pred             cEEeCCC------CcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCCCC
Q 039161          218 ESLDLSF------NKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLT  281 (333)
Q Consensus       218 ~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~  281 (333)
                      +.|+|++      |.+.+.+|..+..+++|+.|++++|++ +.+|....       .....+++.+|++.
T Consensus       779 ~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~-------~~L~~LdLs~N~l~  840 (876)
T 4ecn_A          779 KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT-------PQLYILDIADNPNI  840 (876)
T ss_dssp             CEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-------SSSCEEECCSCTTC
T ss_pred             CEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc-------CCCCEEECCCCCCC
Confidence            9998876      777778888888888999999999988 68887522       13344566666654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.95  E-value=1.3e-26  Score=197.61  Aligned_cols=202  Identities=20%  Similarity=0.220  Sum_probs=160.2

Q ss_pred             CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161            2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI   81 (333)
Q Consensus         2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   81 (333)
                      +++ ++++++++++.++.. |..+.  ++++.|++++|.+++..+..|..+++|++|+|++|.+++..+  ...+++|++
T Consensus         8 ~l~-~l~~l~~~~~~l~~i-p~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~   81 (290)
T 1p9a_G            8 KVA-SHLEVNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGT   81 (290)
T ss_dssp             CST-TCCEEECTTSCCSSC-CSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCE
T ss_pred             ccC-CccEEECCCCCCCcC-CCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCE
Confidence            355 788999999998854 43332  678999999999988778888899999999999999885433  267889999


Q ss_pred             EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchh
Q 039161           82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQ  161 (333)
Q Consensus        82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (333)
                      |++++|.++..+. .+  ..+++|++|++++|.+++..+. .+..                                   
T Consensus        82 L~Ls~N~l~~l~~-~~--~~l~~L~~L~l~~N~l~~l~~~-~~~~-----------------------------------  122 (290)
T 1p9a_G           82 LDLSHNQLQSLPL-LG--QTLPALTVLDVSFNRLTSLPLG-ALRG-----------------------------------  122 (290)
T ss_dssp             EECCSSCCSSCCC-CT--TTCTTCCEEECCSSCCCCCCSS-TTTT-----------------------------------
T ss_pred             EECCCCcCCcCch-hh--ccCCCCCEEECCCCcCcccCHH-HHcC-----------------------------------
Confidence            9999998886543 33  6788899999999988843332 2222                                   


Q ss_pred             hhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCcc
Q 039161          162 LQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTAL  241 (333)
Q Consensus       162 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  241 (333)
                          +++|++|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.++ .+|..+....+|
T Consensus       123 ----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L  197 (290)
T 1p9a_G          123 ----LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL  197 (290)
T ss_dssp             ----CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCC
T ss_pred             ----CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccC
Confidence                567888999999998777777888899999999999998777777888899999999999998 677777777889


Q ss_pred             ceeecccCccee
Q 039161          242 ALLNLSYNRLWG  253 (333)
Q Consensus       242 ~~L~l~~N~l~~  253 (333)
                      +.+++++|++.+
T Consensus       198 ~~l~L~~Np~~C  209 (290)
T 1p9a_G          198 PFAFLHGNPWLC  209 (290)
T ss_dssp             SEEECCSCCBCC
T ss_pred             CeEEeCCCCccC
Confidence            999999998863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=2.6e-27  Score=227.88  Aligned_cols=230  Identities=16%  Similarity=0.218  Sum_probs=171.3

Q ss_pred             CcccEEECcCCccccccchhhhCCCCccEEEC-CCCcCcCC---------------------------------------
Q 039161            5 TELITLHLENNSLEGHIHNTFANASHLRSLDL-YSNKLEGP---------------------------------------   44 (333)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L-s~n~l~~~---------------------------------------   44 (333)
                      .+++.|+|+++.+.|.+|..|+++++|++|+| ++|.++|.                                       
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            36899999999999999999999999999999 77754333                                       


Q ss_pred             -------------------------------------CChhhcCCCCCcEEEccCCcCCC-----------------ccc
Q 039161           45 -------------------------------------LPRSLAKYIKLEVVNVENNMISD-----------------SFP   70 (333)
Q Consensus        45 -------------------------------------~p~~~~~l~~L~~L~L~~n~l~~-----------------~~~   70 (333)
                                                           +|..|.++++|++|+|++|.+++                 .+|
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP  482 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN  482 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence                                                 78889999999999999999997                 378


Q ss_pred             cccc--CCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCc-ccc-cCCcccccChH-------HhhhhcccCcc
Q 039161           71 CWMG--SLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTE-FTG-FLPRRIFPSME-------AMKNVDEQGRL  139 (333)
Q Consensus        71 ~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~-l~~-~~~~~~~~~l~-------~L~~l~~~~~~  139 (333)
                      ..++  .+++|++|+|++|.+.+..|..+  ..+++|+.|++++|+ +++ .+|.. +..+.       +|+.|++.++.
T Consensus       483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l--~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          483 EELSWSNLKDLTDVELYNCPNMTQLPDFL--YDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             SCCCGGGCTTCCEEEEESCTTCCSCCGGG--GGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSC
T ss_pred             hhhhhccCCCCCEEECcCCCCCccChHHH--hCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCCc
Confidence            8877  99999999999999988888766  789999999999998 887 67765 34444       77777776653


Q ss_pred             cc-cccccccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCC-C
Q 039161          140 EY-MGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTA-L  217 (333)
Q Consensus       140 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L  217 (333)
                      -. ++.               ......+++|+.|++++|.++ .+| .+..+++|+.|++++|.++ .+|..+..+++ |
T Consensus       560 L~~ip~---------------~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L  621 (876)
T 4ecn_A          560 LEEFPA---------------SASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQV  621 (876)
T ss_dssp             CCBCCC---------------HHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTC
T ss_pred             CCccCC---------------hhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccC
Confidence            21 110               001222566777777777776 555 6667777777777777777 66666666766 7


Q ss_pred             cEEeCCCCcCCCCCCCCccccCc--cceeecccCcceecCC
Q 039161          218 ESLDLSFNKLDGRIPEQLLSVTA--LALLNLSYNRLWGRIP  256 (333)
Q Consensus       218 ~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~l~~N~l~~~~p  256 (333)
                      +.|+|++|.++ .+|..+..+..  |+.|++++|++++.+|
T Consensus       622 ~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip  661 (876)
T 4ecn_A          622 EGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGR  661 (876)
T ss_dssp             CEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred             CEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccc
Confidence            77777777776 56665555433  6777777777766554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.94  E-value=5.9e-27  Score=220.26  Aligned_cols=233  Identities=19%  Similarity=0.146  Sum_probs=193.7

Q ss_pred             CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCC--CChhhcCCCCCcEEEccCCcCCCcccccccCCCCCC
Q 039161            3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGP--LPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELK   80 (333)
Q Consensus         3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   80 (333)
                      ++ +|++|++++|...+..  .+..+++|++|++++|.+++.  .|..+..+++|++|++++|.+++ .|..+..+++|+
T Consensus       327 l~-~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~  402 (606)
T 3vq2_A          327 LP-FLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQ  402 (606)
T ss_dssp             CS-SCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCC
T ss_pred             CC-ccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCC
Confidence            45 7999999999655433  577899999999999999865  48889999999999999999884 567888999999


Q ss_pred             EEEcccCcCCCCCC-CCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcc
Q 039161           81 ILVLRSNQFDCPPC-NSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHD  159 (333)
Q Consensus        81 ~L~L~~n~l~~~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (333)
                      +|++++|++.+..+ ..+  ..+++|++|++++|.+++..|.. +..+++|+.+++.++...-.              ..
T Consensus       403 ~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~--------------~~  465 (606)
T 3vq2_A          403 HLDFQHSTLKRVTEFSAF--LSLEKLLYLDISYTNTKIDFDGI-FLGLTSLNTLKMAGNSFKDN--------------TL  465 (606)
T ss_dssp             EEECTTSEEESTTTTTTT--TTCTTCCEEECTTSCCEECCTTT-TTTCTTCCEEECTTCEEGGG--------------EE
T ss_pred             eeECCCCccCCccChhhh--hccccCCEEECcCCCCCccchhh-hcCCCCCCEEECCCCcCCCc--------------ch
Confidence            99999999988876 444  77899999999999998766654 77888899988877642110              00


Q ss_pred             hhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccC
Q 039161          160 FQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT  239 (333)
Q Consensus       160 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  239 (333)
                      ......+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|+.|++++|.++ .+|..+..++
T Consensus       466 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~  544 (606)
T 3vq2_A          466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFP  544 (606)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSC
T ss_pred             HHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhc
Confidence            111223789999999999999888999999999999999999999988999999999999999999999 6777788886


Q ss_pred             -ccceeecccCcceecCCC
Q 039161          240 -ALALLNLSYNRLWGRIPR  257 (333)
Q Consensus       240 -~L~~L~l~~N~l~~~~p~  257 (333)
                       +|+.+++++|++.+..+.
T Consensus       545 ~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          545 KSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             TTCCEEECCSCCCCCSSTT
T ss_pred             ccCcEEEccCCCcccCCcc
Confidence             599999999999866554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.94  E-value=5.6e-26  Score=192.24  Aligned_cols=200  Identities=21%  Similarity=0.264  Sum_probs=132.3

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      +|+.|++++|.++..  ..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus        42 ~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  117 (272)
T 3rfs_A           42 SIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV  117 (272)
T ss_dssp             TCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             ceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence            566777777766532  236667777777777777664 2 356667777777777777776555566667777777777


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI  165 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (333)
                      +|++++.++..+  ..+++|++|++++|.+++..+ ..+..                                       
T Consensus       118 ~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~-~~~~~---------------------------------------  155 (272)
T 3rfs_A          118 ENQLQSLPDGVF--DKLTNLTYLNLAHNQLQSLPK-GVFDK---------------------------------------  155 (272)
T ss_dssp             TSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCT-TTTTT---------------------------------------
T ss_pred             CCcCCccCHHHh--ccCCCCCEEECCCCccCccCH-HHhcc---------------------------------------
Confidence            777766665544  556677777777776663322 21111                                       


Q ss_pred             hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161          166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN  245 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  245 (333)
                      +++|+.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.       +++++.++
T Consensus       156 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~  228 (272)
T 3rfs_A          156 LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLS  228 (272)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHH
T ss_pred             CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHH
Confidence            45677777777777766666667777777777777777766666677777777777777766632       44577777


Q ss_pred             cccCcceecCCCC
Q 039161          246 LSYNRLWGRIPRG  258 (333)
Q Consensus       246 l~~N~l~~~~p~~  258 (333)
                      +..|.++|.+|..
T Consensus       229 ~~~n~~~g~ip~~  241 (272)
T 3rfs_A          229 EWINKHSGVVRNS  241 (272)
T ss_dssp             HHHHHTGGGBBCT
T ss_pred             HHHHhCCCcccCc
Confidence            7777777777754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=4e-27  Score=203.75  Aligned_cols=216  Identities=20%  Similarity=0.154  Sum_probs=150.0

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      +|++|+|++|.+++..|..|.++++|++|++++|.+++..+  +..+++|++|++++|.+++..     ..++|++|+++
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~  107 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA  107 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECC
Confidence            68888888888887777888888888888888888875544  778888888888888877432     23788888888


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI  165 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (333)
                      +|++++..+.     .+++|++|++++|.+++..+ ..+..+++|+.+++.++...-.              ....+...
T Consensus       108 ~n~l~~~~~~-----~~~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~--------------~~~~~~~~  167 (317)
T 3o53_A          108 NNNISRVSCS-----RGQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLNEIDTV--------------NFAELAAS  167 (317)
T ss_dssp             SSCCSEEEEC-----CCSSCEEEECCSSCCCSGGG-BCTGGGSSEEEEECTTSCCCEE--------------EGGGGGGG
T ss_pred             CCccCCcCcc-----ccCCCCEEECCCCCCCCccc-hhhhccCCCCEEECCCCCCCcc--------------cHHHHhhc
Confidence            8888766543     25678888888888875443 3356666777777665431100              01111222


Q ss_pred             hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161          166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN  245 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  245 (333)
                      ++.|++|++++|.+++. +. ...+++|++|++++|.+++. |..+..+++|+.|++++|.++ .+|..+..+++|+.|+
T Consensus       168 l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~  243 (317)
T 3o53_A          168 SDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFD  243 (317)
T ss_dssp             TTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEE
T ss_pred             cCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEE
Confidence            56778888888877744 32 22467788888888887744 334777778888888888777 4666677777788888


Q ss_pred             cccCcce
Q 039161          246 LSYNRLW  252 (333)
Q Consensus       246 l~~N~l~  252 (333)
                      +++|+++
T Consensus       244 l~~N~~~  250 (317)
T 3o53_A          244 LRGNGFH  250 (317)
T ss_dssp             CTTCCCB
T ss_pred             ccCCCcc
Confidence            8888776

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.94  E-value=1.9e-26  Score=214.36  Aligned_cols=87  Identities=26%  Similarity=0.309  Sum_probs=66.8

Q ss_pred             hhhccceEEccCcccCccchh---hhhCCCCCCEEEccCCcCCCCCc--cccccCCCCcEEeCCCCcCCCCCCCCccccC
Q 039161          165 IFVMFRAMDFSSNRFHGEISE---VLGNFKSLKVLNLSHNSLTGNIP--VSFENMTALESLDLSFNKLDGRIPEQLLSVT  239 (333)
Q Consensus       165 ~~~~L~~L~ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  239 (333)
                      .+++|++|++++|++++..|.   .++.+++|++|++++|++++..+  ..+..+++|++|++++|.++ .+|..+..++
T Consensus       332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~  410 (549)
T 2z81_A          332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE  410 (549)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCT
T ss_pred             cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccc
Confidence            467788888888888765543   36677888888888888875432  45778888888888888888 6777777888


Q ss_pred             ccceeecccCcce
Q 039161          240 ALALLNLSYNRLW  252 (333)
Q Consensus       240 ~L~~L~l~~N~l~  252 (333)
                      +|+.|++++|.++
T Consensus       411 ~L~~L~Ls~N~l~  423 (549)
T 2z81_A          411 KMRFLNLSSTGIR  423 (549)
T ss_dssp             TCCEEECTTSCCS
T ss_pred             cccEEECCCCCcc
Confidence            8888888888876

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=9.4e-27  Score=212.61  Aligned_cols=216  Identities=21%  Similarity=0.166  Sum_probs=166.5

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      +|++|+|++|.+++..|..|.++++|++|+|++|.+++..|  |..+++|++|+|++|.+++..+     .++|++|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence            89999999999999889999999999999999999987665  8899999999999999985332     3899999999


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI  165 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (333)
                      +|.+++.++.     .+++|+.|++++|.+++..|.. +..+++|+.|++.+|...-.              .+..+...
T Consensus       108 ~N~l~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~--------------~~~~l~~~  167 (487)
T 3oja_A          108 NNNISRVSCS-----RGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTV--------------NFAELAAS  167 (487)
T ss_dssp             SSCCCCEEEC-----CCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCCEE--------------EGGGGGGG
T ss_pred             CCcCCCCCcc-----ccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCCCCc--------------ChHHHhhh
Confidence            9999887654     3578999999999999765544 56677777777766531100              01112223


Q ss_pred             hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161          166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN  245 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  245 (333)
                      ++.|+.|++++|.+++..+  ...+++|+.|+|++|.+++.+| .+..+++|+.|+|++|.++ .+|..+..+++|+.|+
T Consensus       168 l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~  243 (487)
T 3oja_A          168 SDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFD  243 (487)
T ss_dssp             TTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEE
T ss_pred             CCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEE
Confidence            6778888888888875532  2357788888888888886444 4777888888888888888 4666777788888888


Q ss_pred             cccCcce
Q 039161          246 LSYNRLW  252 (333)
Q Consensus       246 l~~N~l~  252 (333)
                      +++|.+.
T Consensus       244 l~~N~l~  250 (487)
T 3oja_A          244 LRGNGFH  250 (487)
T ss_dssp             CTTCCBC
T ss_pred             cCCCCCc
Confidence            8888886

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.94  E-value=7.8e-26  Score=213.53  Aligned_cols=275  Identities=17%  Similarity=0.201  Sum_probs=207.0

Q ss_pred             CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161            2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI   81 (333)
Q Consensus         2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   81 (333)
                      +++ +|++|+|++|+|+++.+++|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++
T Consensus        74 ~l~-~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~  152 (635)
T 4g8a_A           74 SFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE  152 (635)
T ss_dssp             TCT-TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred             CCC-CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCe
Confidence            456 8999999999999999999999999999999999999878888999999999999999999877778999999999


Q ss_pred             EEcccCcCCCCC-CCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhh----------------------------
Q 039161           82 LVLRSNQFDCPP-CNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKN----------------------------  132 (333)
Q Consensus        82 L~L~~n~l~~~~-~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~----------------------------  132 (333)
                      |++++|.++... +..+  ..+++|++|++++|++++..+.. +..+..+..                            
T Consensus       153 L~Ls~N~l~~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~-l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l  229 (635)
T 4g8a_A          153 LNVAHNLIQSFKLPEYF--SNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL  229 (635)
T ss_dssp             EECCSSCCCCCCCCGGG--GGCTTCCEEECCSSCCCEECGGG-GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred             eccccCccccCCCchhh--ccchhhhhhcccCcccccccccc-ccchhhhhhhhhhhhcccCcccccCcccccchhhhhh
Confidence            999999998754 3333  67899999999999887543322 111110000                            


Q ss_pred             --------------------------------------------------------------------------------
Q 039161          133 --------------------------------------------------------------------------------  132 (333)
Q Consensus       133 --------------------------------------------------------------------------------  132 (333)
                                                                                                      
T Consensus       230 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~  309 (635)
T 4g8a_A          230 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVS  309 (635)
T ss_dssp             EEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCS
T ss_pred             hhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccc
Confidence                                                                                            


Q ss_pred             -----------------------hcccCcc-cccccc----------------------ccc---------Cce------
Q 039161          133 -----------------------VDEQGRL-EYMGRA----------------------FCD---------ESI------  151 (333)
Q Consensus       133 -----------------------l~~~~~~-~~~~~~----------------------~~~---------~~~------  151 (333)
                                             +++.++. ..+...                      ...         ...      
T Consensus       310 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~  389 (635)
T 4g8a_A          310 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC  389 (635)
T ss_dssp             EEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEEC
T ss_pred             cccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccccccc
Confidence                                   0000000 000000                      000         000      


Q ss_pred             ----------------------------------EEeec------------------------------Ccchhhhhhhh
Q 039161          152 ----------------------------------TVAMK------------------------------GHDFQLQNIFV  167 (333)
Q Consensus       152 ----------------------------------~~~~~------------------------------~~~~~~~~~~~  167 (333)
                                                        .....                              .........++
T Consensus       390 ~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~  469 (635)
T 4g8a_A          390 SQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS  469 (635)
T ss_dssp             CHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred             ccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccch
Confidence                                              00000                              00011123468


Q ss_pred             ccceEEccCcccC-ccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeec
Q 039161          168 MFRAMDFSSNRFH-GEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL  246 (333)
Q Consensus       168 ~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l  246 (333)
                      .++.|++++|.+. ...|..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|+.|++
T Consensus       470 ~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  549 (635)
T 4g8a_A          470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY  549 (635)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred             hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence            8999999999754 457888999999999999999999999999999999999999999999888889999999999999


Q ss_pred             ccCcceecCCCCCccCCcccc-ccccccCCCCCCCCCCCC
Q 039161          247 SYNRLWGRIPRGNQFNTFQND-SYIGNIRLCGEPLTVRCS  285 (333)
Q Consensus       247 ~~N~l~~~~p~~~~~~~~~~~-~~~~~~~l~g~~~~~~C~  285 (333)
                      ++|++++..|...     ... .....+.+.+||+.|+|.
T Consensus       550 s~N~l~~~~~~~l-----~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          550 SLNHIMTSKKQEL-----QHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             TTSCCCBCCSSCT-----TCCCTTCCEEECTTCCBCCSGG
T ss_pred             CCCcCCCCCHHHH-----HhhhCcCCEEEeeCCCCcccCC
Confidence            9999997777642     222 234567899999999996

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.94  E-value=2.1e-25  Score=190.23  Aligned_cols=208  Identities=22%  Similarity=0.252  Sum_probs=174.5

Q ss_pred             hhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCC
Q 039161           24 TFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQ  103 (333)
Q Consensus        24 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~  103 (333)
                      .+.+++++++++++++.++ .+|..+.  ++++.|++++|.+++..+..|..+++|++|++++|.+++..+.    ..++
T Consensus         5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~l~   77 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD----GTLP   77 (290)
T ss_dssp             EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC----SCCT
T ss_pred             cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC----CCCC
Confidence            4678899999999999998 5665553  6899999999999988888999999999999999999877643    5688


Q ss_pred             cccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCccc
Q 039161          104 ALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEI  183 (333)
Q Consensus       104 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~  183 (333)
                      +|++|++++|.++ .+|..+ ..                                       ++.|++|++++|++++..
T Consensus        78 ~L~~L~Ls~N~l~-~l~~~~-~~---------------------------------------l~~L~~L~l~~N~l~~l~  116 (290)
T 1p9a_G           78 VLGTLDLSHNQLQ-SLPLLG-QT---------------------------------------LPALTVLDVSFNRLTSLP  116 (290)
T ss_dssp             TCCEEECCSSCCS-SCCCCT-TT---------------------------------------CTTCCEEECCSSCCCCCC
T ss_pred             cCCEEECCCCcCC-cCchhh-cc---------------------------------------CCCCCEEECCCCcCcccC
Confidence            9999999999988 445321 11                                       678899999999999777


Q ss_pred             hhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCC
Q 039161          184 SEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNT  263 (333)
Q Consensus       184 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~  263 (333)
                      +..|..+++|++|++++|++++..+..|..+++|+.|+|++|+++...+..+..+++|+.|++++|+++ .+|....   
T Consensus       117 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~---  192 (290)
T 1p9a_G          117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF---  192 (290)
T ss_dssp             SSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT---
T ss_pred             HHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhc---
Confidence            788999999999999999999888888899999999999999999766677888999999999999998 6676421   


Q ss_pred             ccccccccccCCCCCCCCCCCC
Q 039161          264 FQNDSYIGNIRLCGEPLTVRCS  285 (333)
Q Consensus       264 ~~~~~~~~~~~l~g~~~~~~C~  285 (333)
                        .......+.+.|||+.|+|.
T Consensus       193 --~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          193 --GSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             --TTCCCSEEECCSCCBCCSGG
T ss_pred             --ccccCCeEEeCCCCccCcCc
Confidence              12234567889999999985

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=2.6e-25  Score=194.90  Aligned_cols=235  Identities=17%  Similarity=0.233  Sum_probs=146.2

Q ss_pred             CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161            2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI   81 (333)
Q Consensus         2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   81 (333)
                      .++ +|++|++++|.+++.  ..|.++++|++|++++|.+++ ++. +..+++|++|++++|......+ .+..+++|++
T Consensus        86 ~l~-~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~  159 (347)
T 4fmz_A           86 NLV-KLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNY  159 (347)
T ss_dssp             TCT-TCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCE
T ss_pred             cCC-cCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcE
Confidence            456 899999999999864  358999999999999999985 443 8899999999999997654443 4888999999


Q ss_pred             EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccc-cccc-ccc--CceEEeecC
Q 039161           82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEY-MGRA-FCD--ESITVAMKG  157 (333)
Q Consensus        82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~-~~~~-~~~--~~~~~~~~~  157 (333)
                      |++++|.+.+..+    ...+++|++|++++|.+++..+   +..++.|+.+++..+... +... ...  ....+....
T Consensus       160 L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~  232 (347)
T 4fmz_A          160 LTVTESKVKDVTP----IANLTDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNK  232 (347)
T ss_dssp             EECCSSCCCCCGG----GGGCTTCSEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             EEecCCCcCCchh----hccCCCCCEEEccCCccccccc---ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCc
Confidence            9999998887664    2678899999999998885433   566677777776654311 1100 000  000000000


Q ss_pred             c-chhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCcc
Q 039161          158 H-DFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLL  236 (333)
Q Consensus       158 ~-~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  236 (333)
                      . .......+++|++|++++|.+++.  ..+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++..+..+.
T Consensus       233 l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~  308 (347)
T 4fmz_A          233 ITDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIG  308 (347)
T ss_dssp             CCCCGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHH
T ss_pred             cCCCcchhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhh
Confidence            0 000022245555555555555432  2345555555555555555533  2345555555555555555555555555


Q ss_pred             ccCccceeecccCccee
Q 039161          237 SVTALALLNLSYNRLWG  253 (333)
Q Consensus       237 ~l~~L~~L~l~~N~l~~  253 (333)
                      .+++|+.|++++|++++
T Consensus       309 ~l~~L~~L~L~~n~l~~  325 (347)
T 4fmz_A          309 GLTNLTTLFLSQNHITD  325 (347)
T ss_dssp             TCTTCSEEECCSSSCCC
T ss_pred             ccccCCEEEccCCcccc
Confidence            55555555555555553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.93  E-value=7e-26  Score=188.00  Aligned_cols=197  Identities=17%  Similarity=0.199  Sum_probs=98.7

Q ss_pred             CcccEEECcCCccccccchhhhCCCCccEEECCCCc-CcCCCChhhcCCCCCcEEEccC-CcCCCcccccccCCCCCCEE
Q 039161            5 TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNK-LEGPLPRSLAKYIKLEVVNVEN-NMISDSFPCWMGSLSELKIL   82 (333)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L   82 (333)
                      +++++|++++|++++..+..|.++++|++|++++|+ ++...+.+|.++++|++|++++ |.++...+..|..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            355566666666655555555555666666666654 5544444555555666666655 55554444455555566666


Q ss_pred             EcccCcCCCCCCCCCCcccCCccc---EEEcCCC-cccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCc
Q 039161           83 VLRSNQFDCPPCNSNITFPFQALR---IIDLSHT-EFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGH  158 (333)
Q Consensus        83 ~L~~n~l~~~~~~~~~~~~l~~L~---~L~ls~n-~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~  158 (333)
                      ++++|++++.+.  +  ..+++|+   +|++++| .+++ ++...+..                                
T Consensus       111 ~l~~n~l~~lp~--~--~~l~~L~~L~~L~l~~N~~l~~-i~~~~~~~--------------------------------  153 (239)
T 2xwt_C          111 GIFNTGLKMFPD--L--TKVYSTDIFFILEITDNPYMTS-IPVNAFQG--------------------------------  153 (239)
T ss_dssp             EEEEECCCSCCC--C--TTCCBCCSEEEEEEESCTTCCE-ECTTTTTT--------------------------------
T ss_pred             eCCCCCCccccc--c--ccccccccccEEECCCCcchhh-cCcccccc--------------------------------
Confidence            666555555332  2  3344444   5555555 4442 22111111                                


Q ss_pred             chhhhhhhhccc-eEEccCcccCccchhhhhCCCCCCEEEccCCc-CCCCCccccccC-CCCcEEeCCCCcCCCCCCCCc
Q 039161          159 DFQLQNIFVMFR-AMDFSSNRFHGEISEVLGNFKSLKVLNLSHNS-LTGNIPVSFENM-TALESLDLSFNKLDGRIPEQL  235 (333)
Q Consensus       159 ~~~~~~~~~~L~-~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~  235 (333)
                             +++|+ +|++++|+++...+..+.. ++|++|++++|+ +++..+..|..+ ++|+.|++++|.+++ +|.. 
T Consensus       154 -------l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~-  223 (239)
T 2xwt_C          154 -------LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK-  223 (239)
T ss_dssp             -------TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT-
T ss_pred             -------hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh-
Confidence                   34445 5555555555222223333 455555555553 554444455555 555555555555552 2221 


Q ss_pred             cccCccceeecccC
Q 039161          236 LSVTALALLNLSYN  249 (333)
Q Consensus       236 ~~l~~L~~L~l~~N  249 (333)
                       .+++|+.|+++++
T Consensus       224 -~~~~L~~L~l~~~  236 (239)
T 2xwt_C          224 -GLEHLKELIARNT  236 (239)
T ss_dssp             -TCTTCSEEECTTC
T ss_pred             -HhccCceeeccCc
Confidence             3344555554443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=2.8e-27  Score=204.20  Aligned_cols=222  Identities=21%  Similarity=0.261  Sum_probs=171.9

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCc-CCCChhhc-------CCCCCcEEEccCCcCCCcccccc--cC
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLE-GPLPRSLA-------KYIKLEVVNVENNMISDSFPCWM--GS   75 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~-------~l~~L~~L~L~~n~l~~~~~~~~--~~   75 (333)
                      +|+.|++++|.+  ..|..+...  |+.|++++|.++ ..+|..+.       ++++|++|++++|.+++..|..+  ..
T Consensus        44 ~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  119 (312)
T 1wwl_A           44 SLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT  119 (312)
T ss_dssp             ECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred             CceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence            578888899988  556655544  899999999984 45676665       78999999999999998888876  88


Q ss_pred             CCCCCEEEcccCcCCCCCCCCCCcccC-----CcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCc
Q 039161           76 LSELKILVLRSNQFDCPPCNSNITFPF-----QALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDES  150 (333)
Q Consensus        76 l~~L~~L~L~~n~l~~~~~~~~~~~~l-----~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~  150 (333)
                      +++|++|++++|++++. +..+  ..+     ++|++|++++|.+++..+.. +..                        
T Consensus       120 l~~L~~L~Ls~N~l~~~-~~~~--~~l~~~~~~~L~~L~L~~N~l~~~~~~~-~~~------------------------  171 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATR-DAWL--AELQQWLKPGLKVLSIAQAHSLNFSCEQ-VRV------------------------  171 (312)
T ss_dssp             SCCCSEEEEESCBCSSS-SSHH--HHHHTTCCTTCCEEEEESCSCCCCCTTT-CCC------------------------
T ss_pred             CCCccEEEccCCCCcch-hHHH--HHHHHhhcCCCcEEEeeCCCCccchHHH-hcc------------------------
Confidence            99999999999999887 4433  344     89999999999998655443 221                        


Q ss_pred             eEEeecCcchhhhhhhhccceEEccCcccCcc--chhhh--hCCCCCCEEEccCCcCCCC---CccccccCCCCcEEeCC
Q 039161          151 ITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGE--ISEVL--GNFKSLKVLNLSHNSLTGN---IPVSFENMTALESLDLS  223 (333)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~~~~--~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls  223 (333)
                                     +++|++|++++|++.+.  .+..+  ..+++|++|++++|.+++.   ....+..+++|++|+++
T Consensus       172 ---------------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls  236 (312)
T 1wwl_A          172 ---------------FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS  236 (312)
T ss_dssp             ---------------CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECT
T ss_pred             ---------------CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECC
Confidence                           67899999999998765  34444  8899999999999999842   22345678999999999


Q ss_pred             CCcCCCCCC-CCccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCCCCC
Q 039161          224 FNKLDGRIP-EQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTV  282 (333)
Q Consensus       224 ~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~  282 (333)
                      +|.+++..| ..+..+++|+.|++++|.++ .+|....       .....+++.+|.+..
T Consensus       237 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-------~~L~~L~Ls~N~l~~  288 (312)
T 1wwl_A          237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-------AKLSVLDLSYNRLDR  288 (312)
T ss_dssp             TSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-------SEEEEEECCSSCCCS
T ss_pred             CCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-------CCceEEECCCCCCCC
Confidence            999998775 45667899999999999998 7777533       223445666666543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=1.2e-25  Score=190.23  Aligned_cols=203  Identities=18%  Similarity=0.237  Sum_probs=172.9

Q ss_pred             ccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEccc
Q 039161            7 LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRS   86 (333)
Q Consensus         7 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   86 (333)
                      +..+++..+.+.+..  .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++.  ..+..+++|++|++++
T Consensus        21 l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~   94 (272)
T 3rfs_A           21 TIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG   94 (272)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred             HHHHHhcCccccccc--ccccccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence            444556666665443  35678999999999999983 33 588999999999999999863  4788999999999999


Q ss_pred             CcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhh
Q 039161           87 NQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIF  166 (333)
Q Consensus        87 n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (333)
                      |.+++..+..+  ..+++|++|++++|.+++..+. .+..                                       +
T Consensus        95 n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~-~~~~---------------------------------------l  132 (272)
T 3rfs_A           95 NQLQSLPNGVF--DKLTNLKELVLVENQLQSLPDG-VFDK---------------------------------------L  132 (272)
T ss_dssp             SCCCCCCTTTT--TTCTTCCEEECTTSCCCCCCTT-TTTT---------------------------------------C
T ss_pred             CccCccChhHh--cCCcCCCEEECCCCcCCccCHH-Hhcc---------------------------------------C
Confidence            99998887766  7889999999999999854332 2221                                       6


Q ss_pred             hccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeec
Q 039161          167 VMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL  246 (333)
Q Consensus       167 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l  246 (333)
                      ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++..+..+..+++|+.|++
T Consensus       133 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  212 (272)
T 3rfs_A          133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL  212 (272)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEc
Confidence            78999999999999888888899999999999999999888888899999999999999999888888999999999999


Q ss_pred             ccCcceecCCC
Q 039161          247 SYNRLWGRIPR  257 (333)
Q Consensus       247 ~~N~l~~~~p~  257 (333)
                      ++|++.+.+|.
T Consensus       213 ~~N~~~~~~~~  223 (272)
T 3rfs_A          213 HDNPWDCTCPG  223 (272)
T ss_dssp             CSSCBCCCTTT
T ss_pred             cCCCccccCcH
Confidence            99999988774

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.93  E-value=1.7e-25  Score=208.43  Aligned_cols=125  Identities=17%  Similarity=0.209  Sum_probs=106.2

Q ss_pred             ccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEccc
Q 039161            7 LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRS   86 (333)
Q Consensus         7 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   86 (333)
                      .+++++++|.+++ +|..+.  ++|++|++++|.+++..|.+|.++++|++|+|++|.+++..|..|..+++|++|++++
T Consensus        33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  109 (562)
T 3a79_B           33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH  109 (562)
T ss_dssp             CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence            4789999999996 555443  8999999999999988888999999999999999999988889999999999999999


Q ss_pred             CcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcc
Q 039161           87 NQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRL  139 (333)
Q Consensus        87 n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~  139 (333)
                      |+++..+..     .+++|++|++++|.+++......+..+++|+.+++.++.
T Consensus       110 N~l~~lp~~-----~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~  157 (562)
T 3a79_B          110 NRLQNISCC-----PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK  157 (562)
T ss_dssp             SCCCEECSC-----CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred             CcCCccCcc-----ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence            999866543     589999999999999863222347778888888776653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.93  E-value=9.5e-26  Score=210.51  Aligned_cols=230  Identities=19%  Similarity=0.206  Sum_probs=168.4

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcc--cccccCCCCCCEEE
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSF--PCWMGSLSELKILV   83 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~   83 (333)
                      +|++|++++|.+. ..|.  ..+++|++|++++|.+.+..+.  ..+++|++|++++|.+++..  +..+..+++|++|+
T Consensus       305 ~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~  379 (570)
T 2z63_A          305 GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD  379 (570)
T ss_dssp             CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEE
T ss_pred             CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEE
Confidence            5788888888887 3343  4677888888888887765554  67788888888888887543  56677888888888


Q ss_pred             cccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhh
Q 039161           84 LRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQ  163 (333)
Q Consensus        84 L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (333)
                      +++|.+.+.++. +  ..+++|++|++++|.+++..+...+..+++|+.+++..+....               ......
T Consensus       380 l~~n~l~~~~~~-~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~  441 (570)
T 2z63_A          380 LSFNGVITMSSN-F--LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV---------------AFNGIF  441 (570)
T ss_dssp             CCSCSEEEEEEE-E--ETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE---------------CCTTTT
T ss_pred             CCCCcccccccc-c--cccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc---------------cchhhh
Confidence            888887766544 3  6678888888888888766665556666666666665542110               001111


Q ss_pred             hhhhccceEEccCcccC-ccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccc
Q 039161          164 NIFVMFRAMDFSSNRFH-GEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALA  242 (333)
Q Consensus       164 ~~~~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  242 (333)
                      ..+++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|+
T Consensus       442 ~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  521 (570)
T 2z63_A          442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ  521 (570)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence            22677888888888876 46777788888888888888888877788888888888888888888877777778888888


Q ss_pred             eeecccCcceecCCCC
Q 039161          243 LLNLSYNRLWGRIPRG  258 (333)
Q Consensus       243 ~L~l~~N~l~~~~p~~  258 (333)
                      .+++++|++++.+|..
T Consensus       522 ~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          522 KIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             EEECCSSCBCCCTTTT
T ss_pred             EEEecCCcccCCCcch
Confidence            8888888888777654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=1.4e-24  Score=190.28  Aligned_cols=256  Identities=14%  Similarity=0.204  Sum_probs=124.1

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      ++++|+++++.+... + .+..+++|++|++++|.+++ ++. +..+++|++|++++|.++. + +.+..+++|++|+++
T Consensus        45 ~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~  118 (347)
T 4fmz_A           45 SITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLN  118 (347)
T ss_dssp             TCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECT
T ss_pred             cccEEEEeCCccccc-h-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECc
Confidence            455555555555432 2 24455555555555555543 222 4555555555555555543 1 234455555555555


Q ss_pred             cCcCCCCCCCC-------------------CCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc-ccccc
Q 039161           86 SNQFDCPPCNS-------------------NITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGRA  145 (333)
Q Consensus        86 ~n~l~~~~~~~-------------------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~  145 (333)
                      +|.+.+..+..                   .....+++|++|++++|.+.+..+   +..+++|+.+++.++.. .+...
T Consensus       119 ~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~  195 (347)
T 4fmz_A          119 EDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQIEDISPL  195 (347)
T ss_dssp             TSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECTTSCCCCCGGG
T ss_pred             CCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh---hccCCCCCEEEccCCcccccccc
Confidence            55544433200                   001344555555555555443222   44455555555544321 11110


Q ss_pred             c-cc--CceEEeecCc-chhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEe
Q 039161          146 F-CD--ESITVAMKGH-DFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLD  221 (333)
Q Consensus       146 ~-~~--~~~~~~~~~~-~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  221 (333)
                      . ..  .......... .......+++|++|++++|.+++..+  +..+++|++|++++|.+++.  ..+..+++|+.|+
T Consensus       196 ~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~  271 (347)
T 4fmz_A          196 ASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLN  271 (347)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred             cCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEE
Confidence            0 00  0000000000 00112335667777777777664333  66667777777777776643  3466667777777


Q ss_pred             CCCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCCCC
Q 039161          222 LSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLT  281 (333)
Q Consensus       222 Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~  281 (333)
                      +++|.+++.  ..+..+++|+.|++++|.+++..|.     .+........+.+.+|++.
T Consensus       272 l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~-----~l~~l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          272 VGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME-----VIGGLTNLTTLFLSQNHIT  324 (347)
T ss_dssp             CCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH-----HHHTCTTCSEEECCSSSCC
T ss_pred             ccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh-----HhhccccCCEEEccCCccc
Confidence            777777643  3456667777777777777644432     1222233344455555544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.93  E-value=3.1e-26  Score=197.58  Aligned_cols=201  Identities=24%  Similarity=0.269  Sum_probs=137.7

Q ss_pred             ccEEECcCCccccccch---hhhCCCCccEEECCCCcCcCCCChhh--cCCCCCcEEEccCCcCCCccc----ccccCCC
Q 039161            7 LITLHLENNSLEGHIHN---TFANASHLRSLDLYSNKLEGPLPRSL--AKYIKLEVVNVENNMISDSFP----CWMGSLS   77 (333)
Q Consensus         7 L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~l~   77 (333)
                      ++.+.+.++.++...-.   .+..+++|++|++++|.+++..|..+  ..+++|++|++++|.+++..+    ..+..++
T Consensus        66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~  145 (310)
T 4glp_A           66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP  145 (310)
T ss_dssp             CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred             eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence            67788888776532111   12345779999999999998888888  889999999999999987544    3445789


Q ss_pred             CCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCccccc--CC-cccccChHHhhhhcccCcccccccccccCceEEe
Q 039161           78 ELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGF--LP-RRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVA  154 (333)
Q Consensus        78 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~-~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~  154 (333)
                      +|++|++++|++.+..+..+  ..+++|++|++++|++.+.  ++ ...+..                            
T Consensus       146 ~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~----------------------------  195 (310)
T 4glp_A          146 GLKVLSIAQAHSPAFSCEQV--RAFPALTSLDLSDNPGLGERGLMAALCPHK----------------------------  195 (310)
T ss_dssp             CCCEEEEECCSSCCCCTTSC--CCCTTCCEEECCSCTTCHHHHHHTTSCTTS----------------------------
T ss_pred             CCCEEEeeCCCcchhhHHHh--ccCCCCCEEECCCCCCccchhhhHHHhhhc----------------------------
Confidence            99999999999988887776  7889999999999987642  11 111222                            


Q ss_pred             ecCcchhhhhhhhccceEEccCcccCccchh----hhhCCCCCCEEEccCCcCCCCCccccccC---CCCcEEeCCCCcC
Q 039161          155 MKGHDFQLQNIFVMFRAMDFSSNRFHGEISE----VLGNFKSLKVLNLSHNSLTGNIPVSFENM---TALESLDLSFNKL  227 (333)
Q Consensus       155 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l  227 (333)
                                 +++|++|++++|+++ .++.    .+..+++|++|+|++|.+++..|..+..+   ++|++|+|++|.+
T Consensus       196 -----------l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l  263 (310)
T 4glp_A          196 -----------FPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGL  263 (310)
T ss_dssp             -----------SCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCC
T ss_pred             -----------CCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCC
Confidence                       455666666666665 2222    23555666666666666665555555544   4666666666666


Q ss_pred             CCCCCCCccccCccceeecccCcce
Q 039161          228 DGRIPEQLLSVTALALLNLSYNRLW  252 (333)
Q Consensus       228 ~~~~~~~~~~l~~L~~L~l~~N~l~  252 (333)
                      + .+|..+.  ++|+.|++++|+++
T Consensus       264 ~-~lp~~~~--~~L~~L~Ls~N~l~  285 (310)
T 4glp_A          264 E-QVPKGLP--AKLRVLDLSSNRLN  285 (310)
T ss_dssp             C-SCCSCCC--SCCSCEECCSCCCC
T ss_pred             C-chhhhhc--CCCCEEECCCCcCC
Confidence            6 4455443  56666666666665

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.93  E-value=9.6e-25  Score=182.45  Aligned_cols=180  Identities=22%  Similarity=0.230  Sum_probs=103.8

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      ..++++++++.++. +|..+.  +++++|++++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            34556666666552 332222  455666666666655555555556666666666666655555555555555555555


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI  165 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (333)
                      +|++++.++..+  ..+++                                                             
T Consensus        92 ~n~l~~~~~~~~--~~l~~-------------------------------------------------------------  108 (251)
T 3m19_A           92 NNQLASLPLGVF--DHLTQ-------------------------------------------------------------  108 (251)
T ss_dssp             TSCCCCCCTTTT--TTCTT-------------------------------------------------------------
T ss_pred             CCcccccChhHh--cccCC-------------------------------------------------------------
Confidence            555554444333  33444                                                             


Q ss_pred             hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161          166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN  245 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  245 (333)
                         |++|++++|++++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|+.|+
T Consensus       109 ---L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  185 (251)
T 3m19_A          109 ---LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT  185 (251)
T ss_dssp             ---CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             ---CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence               45555555555544444455666666666666666655555666666666666666666655555666666677777


Q ss_pred             cccCcceec
Q 039161          246 LSYNRLWGR  254 (333)
Q Consensus       246 l~~N~l~~~  254 (333)
                      +++|++++.
T Consensus       186 l~~N~~~c~  194 (251)
T 3m19_A          186 LFGNQFDCS  194 (251)
T ss_dssp             CCSCCBCTT
T ss_pred             eeCCceeCC
Confidence            777766543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=3.5e-26  Score=197.83  Aligned_cols=225  Identities=20%  Similarity=0.208  Sum_probs=185.8

Q ss_pred             CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161            2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI   81 (333)
Q Consensus         2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   81 (333)
                      .++ +|++|+|++|.+++..+  |..+++|++|++++|.+++.     ...++|++|++++|.+++..+.   .+++|++
T Consensus        56 ~l~-~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~  124 (317)
T 3o53_A           56 PFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKN  124 (317)
T ss_dssp             TCT-TCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEE
T ss_pred             CCC-cCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCE
Confidence            456 89999999999987765  89999999999999999843     2448999999999999965544   3688999


Q ss_pred             EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchh
Q 039161           82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQ  161 (333)
Q Consensus        82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (333)
                      |++++|++++..+..+  ..+++|++|++++|.+++..+..+...+++|+.+++.++...-.            ...   
T Consensus       125 L~l~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~------------~~~---  187 (317)
T 3o53_A          125 IYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV------------KGQ---  187 (317)
T ss_dssp             EECCSSCCCSGGGBCT--GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE------------ECC---
T ss_pred             EECCCCCCCCccchhh--hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc------------ccc---
Confidence            9999999998877666  77899999999999999777766666788999999887642100            000   


Q ss_pred             hhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCC-CCCCCCccccCc
Q 039161          162 LQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD-GRIPEQLLSVTA  240 (333)
Q Consensus       162 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~  240 (333)
                        ..+++|++|++++|++++. |..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+. +..+..+..+++
T Consensus       188 --~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~  263 (317)
T 3o53_A          188 --VVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR  263 (317)
T ss_dssp             --CCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHH
T ss_pred             --cccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhcccc
Confidence              0168899999999999954 445889999999999999999 56778899999999999999998 677888899999


Q ss_pred             cceeecccC-cceecCCCC
Q 039161          241 LALLNLSYN-RLWGRIPRG  258 (333)
Q Consensus       241 L~~L~l~~N-~l~~~~p~~  258 (333)
                      |+.++++++ .++|..|..
T Consensus       264 L~~l~l~~~~~l~~~~~~~  282 (317)
T 3o53_A          264 VQTVAKQTVKKLTGQNEEE  282 (317)
T ss_dssp             HHHHHHHHHHHHHSSSSCC
T ss_pred             ceEEECCCchhccCCchhc
Confidence            999999954 677666554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=7e-26  Score=206.83  Aligned_cols=215  Identities=21%  Similarity=0.211  Sum_probs=179.0

Q ss_pred             CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161            2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI   81 (333)
Q Consensus         2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   81 (333)
                      .++ +|++|+|++|.+++..|  |.++++|++|+|++|.+++..     ..++|++|++++|.+++..+.   .+++|++
T Consensus        56 ~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~~N~l~~~~~~---~l~~L~~  124 (487)
T 3oja_A           56 PFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKN  124 (487)
T ss_dssp             TCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCCCEEEC---CCSSCEE
T ss_pred             CCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECcCCcCCCCCcc---ccCCCCE
Confidence            456 89999999999997776  899999999999999998533     338999999999999976554   4588999


Q ss_pred             EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchh
Q 039161           82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQ  161 (333)
Q Consensus        82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (333)
                      |++++|.+++..+..+  ..+++|++|++++|.+++..|..+...+++|+.|++.+|.-.-..            .    
T Consensus       125 L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~------------~----  186 (487)
T 3oja_A          125 IYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK------------G----  186 (487)
T ss_dssp             EECCSSCCCSGGGBCG--GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE------------C----
T ss_pred             EECCCCCCCCCCchhh--cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc------------c----
Confidence            9999999999877766  778999999999999998888776668899999998876421100            0    


Q ss_pred             hhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCC-CCCCCCccccCc
Q 039161          162 LQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD-GRIPEQLLSVTA  240 (333)
Q Consensus       162 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~  240 (333)
                       ...++.|+.|++++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.
T Consensus       187 -~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~  263 (487)
T 3oja_A          187 -QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR  263 (487)
T ss_dssp             -CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHH
T ss_pred             -cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCC
Confidence             0017899999999999996555 48899999999999999995 6777899999999999999998 566777788888


Q ss_pred             cceeeccc
Q 039161          241 LALLNLSY  248 (333)
Q Consensus       241 L~~L~l~~  248 (333)
                      ++.++++.
T Consensus       264 L~~l~~~~  271 (487)
T 3oja_A          264 VQTVAKQT  271 (487)
T ss_dssp             HHHHHHHH
T ss_pred             CcEEeccc
Confidence            88888763

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.92  E-value=5.2e-24  Score=178.00  Aligned_cols=162  Identities=20%  Similarity=0.261  Sum_probs=134.8

Q ss_pred             CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161            3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL   82 (333)
Q Consensus         3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   82 (333)
                      +|++++.|+|++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|
T Consensus        33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  112 (251)
T 3m19_A           33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL  112 (251)
T ss_dssp             CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEE
Confidence            55689999999999999999999999999999999999999888889999999999999999998777889999999999


Q ss_pred             EcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhh
Q 039161           83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQL  162 (333)
Q Consensus        83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (333)
                      ++++|++++.++..+  ..+++|++|++++|.                                                
T Consensus       113 ~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~------------------------------------------------  142 (251)
T 3m19_A          113 YLGGNQLKSLPSGVF--DRLTKLKELRLNTNQ------------------------------------------------  142 (251)
T ss_dssp             ECCSSCCCCCCTTTT--TTCTTCCEEECCSSC------------------------------------------------
T ss_pred             EcCCCcCCCcChhHh--ccCCcccEEECcCCc------------------------------------------------
Confidence            999999987776554  445555555555554                                                


Q ss_pred             hhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCC
Q 039161          163 QNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGR  230 (333)
Q Consensus       163 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  230 (333)
                                      +++..+..+..+++|++|+|++|++++..+..+..+++|+.|++++|.+.+.
T Consensus       143 ----------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          143 ----------------LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             ----------------CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             ----------------CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence                            4434445566778888888888888877777788888888888888888754

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.92  E-value=3.5e-24  Score=195.04  Aligned_cols=235  Identities=20%  Similarity=0.320  Sum_probs=134.1

Q ss_pred             CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161            3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL   82 (333)
Q Consensus         3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   82 (333)
                      ++ +|++|++++|.+++..+  +.++++|++|++++|.+++..+  +.++++|++|++++|.+++..+  +..+++|++|
T Consensus        67 l~-~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  139 (466)
T 1o6v_A           67 LN-NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRL  139 (466)
T ss_dssp             CT-TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred             hc-CCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEE
Confidence            44 78899999998886655  8888889999999888885444  8888888888888888885432  7788888888


Q ss_pred             EcccCcCCCCCCCC-----------------CCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccc-ccc
Q 039161           83 VLRSNQFDCPPCNS-----------------NITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEY-MGR  144 (333)
Q Consensus        83 ~L~~n~l~~~~~~~-----------------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~-~~~  144 (333)
                      ++++|.+.+.....                 .....+++|++|++++|.+++. +  .+..+++|+.+++.++... +..
T Consensus       140 ~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~l~~n~l~~~~~  216 (466)
T 1o6v_A          140 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-S--VLAKLTNLESLIATNNQISDITP  216 (466)
T ss_dssp             EEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-G--GGGGCTTCSEEECCSSCCCCCGG
T ss_pred             ECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-h--hhccCCCCCEEEecCCccccccc
Confidence            88888776543100                 0124567778888888877643 2  1555666666666554311 100


Q ss_pred             -ccccCceEEeecC---cchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEE
Q 039161          145 -AFCDESITVAMKG---HDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESL  220 (333)
Q Consensus       145 -~~~~~~~~~~~~~---~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  220 (333)
                       .............   ........+++|+.|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|+.|
T Consensus       217 ~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  292 (466)
T 1o6v_A          217 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNL  292 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred             ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeE
Confidence             0000000000000   000112224555666666665553333  4455555555555555553322  4445555555


Q ss_pred             eCCCCcCCCCCCCCccccCccceeecccCccee
Q 039161          221 DLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG  253 (333)
Q Consensus       221 ~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~  253 (333)
                      ++++|.+++..+  +..+++|+.|++++|++++
T Consensus       293 ~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~  323 (466)
T 1o6v_A          293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISD  323 (466)
T ss_dssp             ECCSSCCSCCGG--GGGCTTCSEEECCSSCCSC
T ss_pred             EcCCCcccCchh--hcCCCCCCEEECcCCcCCC
Confidence            555555543222  3444445555555554443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.92  E-value=4.1e-24  Score=183.93  Aligned_cols=190  Identities=17%  Similarity=0.245  Sum_probs=153.6

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      +|++|++++|.++.. + .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++.  ..+..+++|++|+++
T Consensus        42 ~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           42 GITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLT  115 (308)
T ss_dssp             TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECT
T ss_pred             CcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECC
Confidence            688888888888753 3 577888888888888888854 33 88888888888888888753  367888888888888


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI  165 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (333)
                      +|++++..+  +  ..+++|++|++++|.+++..+   +                                       ..
T Consensus       116 ~n~l~~~~~--l--~~l~~L~~L~l~~n~l~~~~~---l---------------------------------------~~  149 (308)
T 1h6u_A          116 STQITDVTP--L--AGLSNLQVLYLDLNQITNISP---L---------------------------------------AG  149 (308)
T ss_dssp             TSCCCCCGG--G--TTCTTCCEEECCSSCCCCCGG---G---------------------------------------GG
T ss_pred             CCCCCCchh--h--cCCCCCCEEECCCCccCcCcc---c---------------------------------------cC
Confidence            888877653  2  678888888888888774322   1                                       11


Q ss_pred             hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161          166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN  245 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  245 (333)
                      +++|+.|++++|.+++..+  +..+++|+.|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|+.|+
T Consensus       150 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~  223 (308)
T 1h6u_A          150 LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVT  223 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEE
T ss_pred             CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEE
Confidence            6789999999999985444  8899999999999999996544  8899999999999999996553  78899999999


Q ss_pred             cccCccee
Q 039161          246 LSYNRLWG  253 (333)
Q Consensus       246 l~~N~l~~  253 (333)
                      +++|++++
T Consensus       224 l~~N~i~~  231 (308)
T 1h6u_A          224 LTNQTITN  231 (308)
T ss_dssp             EEEEEEEC
T ss_pred             ccCCeeec
Confidence            99999974

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=1.3e-23  Score=190.30  Aligned_cols=205  Identities=16%  Similarity=0.149  Sum_probs=133.1

Q ss_pred             CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161            3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL   82 (333)
Q Consensus         3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   82 (333)
                      ++ +|++|++++|.+++. | .|..+++|++|++++|++++. |  +..+++|++|++++|.+++. +  +..+++|++|
T Consensus        41 l~-~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L  111 (457)
T 3bz5_A           41 LA-TLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYL  111 (457)
T ss_dssp             HT-TCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred             cC-CCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEE
Confidence            45 799999999999975 4 688999999999999999864 4  88899999999999999864 3  8889999999


Q ss_pred             EcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc--cccccccc--CceEEeecCc
Q 039161           83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE--YMGRAFCD--ESITVAMKGH  158 (333)
Q Consensus        83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~--~~~~~~~~--~~~~~~~~~~  158 (333)
                      ++++|++++.+   +  ..+++|++|++++|.+++. +   +..+++|+.+++..+..  .+......  ....+..+..
T Consensus       112 ~L~~N~l~~l~---~--~~l~~L~~L~l~~N~l~~l-~---l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l  182 (457)
T 3bz5_A          112 NCDTNKLTKLD---V--SQNPLLTYLNCARNTLTEI-D---VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKI  182 (457)
T ss_dssp             ECCSSCCSCCC---C--TTCTTCCEEECTTSCCSCC-C---CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCCeec---C--CCCCcCCEEECCCCcccee-c---cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcc
Confidence            99999998763   3  6788999999999998863 3   56677777777766521  11000000  0000000000


Q ss_pred             chhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCC
Q 039161          159 DFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRI  231 (333)
Q Consensus       159 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  231 (333)
                      .......++.|+.|++++|++++.   .+..+++|++|++++|++++ +|  ++.+++|+.|++++|.+++..
T Consensus       183 ~~l~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~  249 (457)
T 3bz5_A          183 TELDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD  249 (457)
T ss_dssp             CCCCCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred             ceeccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence            000012244555555555555532   24455555555555555554 23  445555555555555555443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.91  E-value=2e-23  Score=190.10  Aligned_cols=211  Identities=18%  Similarity=0.229  Sum_probs=96.1

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      +|++|++++|.+++.  ..+..+++|++|++++|.+++..|  +..+++|++|++++|.+++.  ..+..+++|++|+++
T Consensus       178 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~  251 (466)
T 1o6v_A          178 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLA  251 (466)
T ss_dssp             TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred             CCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECC
Confidence            344444444444432  124444444444444444443222  33444444444444444421  234444444444444


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI  165 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (333)
                      +|.+.+..+  +  ..+++|++|++++|.+++..+   +..+++|+.+++.++...               ...  ....
T Consensus       252 ~n~l~~~~~--~--~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~---------------~~~--~~~~  307 (466)
T 1o6v_A          252 NNQISNLAP--L--SGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLE---------------DIS--PISN  307 (466)
T ss_dssp             SSCCCCCGG--G--TTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCS---------------CCG--GGGG
T ss_pred             CCccccchh--h--hcCCCCCEEECCCCccCcccc---ccCCCccCeEEcCCCccc---------------Cch--hhcC
Confidence            444444332  1  334444455554444443221   333444444444332100               000  0122


Q ss_pred             hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161          166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN  245 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  245 (333)
                      +++|+.|++++|++++..|  +..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..|  +..+++|+.|+
T Consensus       308 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  381 (466)
T 1o6v_A          308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLG  381 (466)
T ss_dssp             CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEE
T ss_pred             CCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEe
Confidence            4555555555555554433  44555555555555555543  244555555555555555554444  45555555555


Q ss_pred             cccCcce
Q 039161          246 LSYNRLW  252 (333)
Q Consensus       246 l~~N~l~  252 (333)
                      +++|+++
T Consensus       382 l~~n~~~  388 (466)
T 1o6v_A          382 LNDQAWT  388 (466)
T ss_dssp             CCCEEEE
T ss_pred             ccCCccc
Confidence            5555555

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.91  E-value=1.9e-23  Score=189.16  Aligned_cols=233  Identities=16%  Similarity=0.105  Sum_probs=153.3

Q ss_pred             CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161            2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI   81 (333)
Q Consensus         2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   81 (333)
                      .++ +|++|++++|.+++. +  ++.+++|++|++++|.+++. +  +.++++|++|++++|.+++ ++  +..+++|++
T Consensus        62 ~l~-~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~  131 (457)
T 3bz5_A           62 KLT-GLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTY  131 (457)
T ss_dssp             GCT-TCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCE
T ss_pred             ccC-CCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCE
Confidence            345 799999999999875 3  78889999999999999864 3  7888999999999999886 33  788889999


Q ss_pred             EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc-ccccccccC--ceEEeecCc
Q 039161           82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGRAFCDE--SITVAMKGH  158 (333)
Q Consensus        82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~~~~~--~~~~~~~~~  158 (333)
                      |++++|++++..   +  ..+++|++|++++|...+.++   +..+++|+.+++..+.- .++......  ...+..+..
T Consensus       132 L~l~~N~l~~l~---l--~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l  203 (457)
T 3bz5_A          132 LNCARNTLTEID---V--SHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNI  203 (457)
T ss_dssp             EECTTSCCSCCC---C--TTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCC
T ss_pred             EECCCCccceec---c--ccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceeccccCCCCCEEECcCCcC
Confidence            999999888753   2  556777777777775444442   45566666666655431 111111100  001111110


Q ss_pred             chhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCC-------CCcEEeCCCCcCCCCC
Q 039161          159 DFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMT-------ALESLDLSFNKLDGRI  231 (333)
Q Consensus       159 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-------~L~~L~Ls~n~l~~~~  231 (333)
                      .......+++|+.|++++|++++ +|  +..+++|+.|++++|++++..+..+..++       +|+.|++++|.+.+.+
T Consensus       204 ~~~~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~  280 (457)
T 3bz5_A          204 TKLDLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF  280 (457)
T ss_dssp             SCCCCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEE
T ss_pred             CeeccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcc
Confidence            00012336889999999999986 55  77889999999999999876554444333       3445555555544444


Q ss_pred             CCCccccCccceeecccCcceecCCC
Q 039161          232 PEQLLSVTALALLNLSYNRLWGRIPR  257 (333)
Q Consensus       232 ~~~~~~l~~L~~L~l~~N~l~~~~p~  257 (333)
                      |  +..+++|+.|++++|...+.+|.
T Consensus       281 ~--~~~l~~L~~L~Ls~n~~l~~l~~  304 (457)
T 3bz5_A          281 Q--AEGCRKIKELDVTHNTQLYLLDC  304 (457)
T ss_dssp             E--CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred             c--ccccccCCEEECCCCcccceecc
Confidence            3  34556677777777766555553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.91  E-value=2.3e-24  Score=178.82  Aligned_cols=192  Identities=15%  Similarity=0.198  Sum_probs=161.1

Q ss_pred             cccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCc-CCCcccccccCCCCCCEEEccc-CcCCCCCC
Q 039161           17 LEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM-ISDSFPCWMGSLSELKILVLRS-NQFDCPPC   94 (333)
Q Consensus        17 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~   94 (333)
                      ++ .+|. +.  +++++|++++|++++..+..|.++++|++|++++|. ++...+..|..+++|++|++++ |.++..++
T Consensus        23 l~-~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           23 IQ-RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             CS-SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             cc-ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            55 3444 43  489999999999998777789999999999999997 8876667899999999999998 99998887


Q ss_pred             CCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccc---e
Q 039161           95 NSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFR---A  171 (333)
Q Consensus        95 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~---~  171 (333)
                      ..+  ..+++|++|++++|.+++ +|.  +..                                       +++|+   +
T Consensus        99 ~~f--~~l~~L~~L~l~~n~l~~-lp~--~~~---------------------------------------l~~L~~L~~  134 (239)
T 2xwt_C           99 DAL--KELPLLKFLGIFNTGLKM-FPD--LTK---------------------------------------VYSTDIFFI  134 (239)
T ss_dssp             TSE--ECCTTCCEEEEEEECCCS-CCC--CTT---------------------------------------CCBCCSEEE
T ss_pred             HHh--CCCCCCCEEeCCCCCCcc-ccc--ccc---------------------------------------ccccccccE
Confidence            766  789999999999999985 553  222                                       34444   9


Q ss_pred             EEccCc-ccCccchhhhhCCCCCC-EEEccCCcCCCCCccccccCCCCcEEeCCCCc-CCCCCCCCcccc-Cccceeecc
Q 039161          172 MDFSSN-RFHGEISEVLGNFKSLK-VLNLSHNSLTGNIPVSFENMTALESLDLSFNK-LDGRIPEQLLSV-TALALLNLS  247 (333)
Q Consensus       172 L~ls~n-~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~l~  247 (333)
                      |++++| .+++..+..|..+++|+ +|++++|.++...+..+.. ++|+.|++++|+ +++..+..|..+ ++|+.|+++
T Consensus       135 L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~  213 (239)
T 2xwt_C          135 LEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS  213 (239)
T ss_dssp             EEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECT
T ss_pred             EECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECC
Confidence            999999 99977777899999999 9999999999555555655 899999999995 997777889999 999999999


Q ss_pred             cCcceecCCCC
Q 039161          248 YNRLWGRIPRG  258 (333)
Q Consensus       248 ~N~l~~~~p~~  258 (333)
                      +|+++ .+|..
T Consensus       214 ~N~l~-~l~~~  223 (239)
T 2xwt_C          214 QTSVT-ALPSK  223 (239)
T ss_dssp             TCCCC-CCCCT
T ss_pred             CCccc-cCChh
Confidence            99998 55554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.91  E-value=5.6e-24  Score=183.38  Aligned_cols=205  Identities=21%  Similarity=0.169  Sum_probs=165.9

Q ss_pred             cccEEECcCCccccccchhh--hCCCCccEEECCCCcCcCCCC----hhhcCCCCCcEEEccCCcCCCcccccccCCCCC
Q 039161            6 ELITLHLENNSLEGHIHNTF--ANASHLRSLDLYSNKLEGPLP----RSLAKYIKLEVVNVENNMISDSFPCWMGSLSEL   79 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   79 (333)
                      +|++|++++|.+++..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|.+++..+..|..+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            69999999999999998888  889999999999999997655    345678999999999999998888899999999


Q ss_pred             CEEEcccCcCCCC--CCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecC
Q 039161           80 KILVLRSNQFDCP--PCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKG  157 (333)
Q Consensus        80 ~~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~  157 (333)
                      ++|++++|++.+.  .+.......+++|++|++++|.++. ++...                                  
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~----------------------------------  216 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVC----------------------------------  216 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHH----------------------------------
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHH----------------------------------
Confidence            9999999997642  1111112578899999999998862 22110                                  


Q ss_pred             cchhhhhhhhccceEEccCcccCccchhhhhCC---CCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCC
Q 039161          158 HDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNF---KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQ  234 (333)
Q Consensus       158 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  234 (333)
                        ......++.|++|++++|++++..|..+..+   ++|++|++++|+++ .+|..+.  ++|+.|+|++|.+++. |. 
T Consensus       217 --~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-  289 (310)
T 4glp_A          217 --AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-  289 (310)
T ss_dssp             --HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-
T ss_pred             --HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-
Confidence              0011226889999999999998777777766   69999999999999 5676664  8999999999999954 43 


Q ss_pred             ccccCccceeecccCcce
Q 039161          235 LLSVTALALLNLSYNRLW  252 (333)
Q Consensus       235 ~~~l~~L~~L~l~~N~l~  252 (333)
                      +..+++|+.|++++|+++
T Consensus       290 ~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          290 PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             TTSCCCCSCEECSSTTTS
T ss_pred             hhhCCCccEEECcCCCCC
Confidence            677899999999999996

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.90  E-value=1.2e-22  Score=183.80  Aligned_cols=229  Identities=26%  Similarity=0.337  Sum_probs=130.3

Q ss_pred             cCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEE
Q 039161            4 STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILV   83 (333)
Q Consensus         4 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   83 (333)
                      |++|++|++++|.+++ +| .|+++++|++|++++|++++ +|..+   .+|++|++++|.+++ +| .+..+++|++|+
T Consensus       130 ~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~  201 (454)
T 1jl5_A          130 PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY  201 (454)
T ss_dssp             CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred             CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence            3467777777777775 44 47777777777777777774 44332   467777777777765 44 467777777777


Q ss_pred             cccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc-ccccccccCceEEeecCc-chh
Q 039161           84 LRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGRAFCDESITVAMKGH-DFQ  161 (333)
Q Consensus        84 L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~  161 (333)
                      +++|.+++.+.      ..++|++|++++|.++ .+|.  +..+++|+.+++.++.- .++... ........... ...
T Consensus       202 l~~N~l~~l~~------~~~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~l~~~~-~~L~~L~l~~N~l~~  271 (454)
T 1jl5_A          202 ADNNSLKKLPD------LPLSLESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLLKTLPDLP-PSLEALNVRDNYLTD  271 (454)
T ss_dssp             CCSSCCSSCCC------CCTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSSCCSCC-TTCCEEECCSSCCSC
T ss_pred             CCCCcCCcCCC------CcCcccEEECcCCcCC-cccc--cCCCCCCCEEECCCCcCCcccccc-cccCEEECCCCcccc
Confidence            77777766432      1246677777777666 4553  55666677766665431 111100 00000000000 000


Q ss_pred             hhhhhhccceEEccCcccCc--cchhh-------------hhCC-CCCCEEEccCCcCCCCCccccccCCCCcEEeCCCC
Q 039161          162 LQNIFVMFRAMDFSSNRFHG--EISEV-------------LGNF-KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFN  225 (333)
Q Consensus       162 ~~~~~~~L~~L~ls~n~l~~--~~~~~-------------~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  225 (333)
                      +...+++|+.|++++|.+++  ..|..             +..+ ++|++|++++|++++ +|..   +++|+.|++++|
T Consensus       272 l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N  347 (454)
T 1jl5_A          272 LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFN  347 (454)
T ss_dssp             CCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS
T ss_pred             cCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCC
Confidence            11112344555555554443  11111             1112 467777777777774 4433   467888888888


Q ss_pred             cCCCCCCCCccccCccceeecccCccee--cCCCC
Q 039161          226 KLDGRIPEQLLSVTALALLNLSYNRLWG--RIPRG  258 (333)
Q Consensus       226 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~p~~  258 (333)
                      .++ .+|.   .+++|+.|++++|++++  .+|..
T Consensus       348 ~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~  378 (454)
T 1jl5_A          348 HLA-EVPE---LPQNLKQLHVEYNPLREFPDIPES  378 (454)
T ss_dssp             CCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred             ccc-cccc---hhhhccEEECCCCCCCcCCCChHH
Confidence            877 4555   35778888888888876  56654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=1.3e-24  Score=191.46  Aligned_cols=238  Identities=14%  Similarity=0.187  Sum_probs=125.5

Q ss_pred             cCcccEEECcCCccccccc----hhhhCCC-CccEEECCCCcCcCCCChhhcCC-----CCCcEEEccCCcCCCcccccc
Q 039161            4 STELITLHLENNSLEGHIH----NTFANAS-HLRSLDLYSNKLEGPLPRSLAKY-----IKLEVVNVENNMISDSFPCWM   73 (333)
Q Consensus         4 ~~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~~~~~   73 (333)
                      +++|++|+|++|.+++..+    ..|.+++ +|++|+|++|.+++..+..+..+     ++|++|+|++|.+++..+..+
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            4457777777777776666    6666677 77777777777776666666554     777777777777775555433


Q ss_pred             ----cCC-CCCCEEEcccCcCCCCCCCCCC--ccc-CCcccEEEcCCCcccccCCcccc---cCh-HHhhhhcccCcccc
Q 039161           74 ----GSL-SELKILVLRSNQFDCPPCNSNI--TFP-FQALRIIDLSHTEFTGFLPRRIF---PSM-EAMKNVDEQGRLEY  141 (333)
Q Consensus        74 ----~~l-~~L~~L~L~~n~l~~~~~~~~~--~~~-l~~L~~L~ls~n~l~~~~~~~~~---~~l-~~L~~l~~~~~~~~  141 (333)
                          ..+ ++|++|++++|.+++..+..+.  ... .++|++|++++|.+++.....+.   ... .+|+.+++.++...
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence                333 6777777777777655433220  011 24777777777777643322211   111 14444444433210


Q ss_pred             cccccccCceEEeecCcchhhhhhh-hccceEEccCcccCcc----chhhhhC-CCCCCEEEccCCcCCCCCc----ccc
Q 039161          142 MGRAFCDESITVAMKGHDFQLQNIF-VMFRAMDFSSNRFHGE----ISEVLGN-FKSLKVLNLSHNSLTGNIP----VSF  211 (333)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~ls~n~l~~~----~~~~~~~-l~~L~~L~Ls~n~l~~~~~----~~~  211 (333)
                      -...           .......... ++|++|++++|.+++.    ++..+.. .++|++|+|++|.+++..+    ..+
T Consensus       181 ~~~~-----------~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~  249 (362)
T 3goz_A          181 SKNC-----------AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK  249 (362)
T ss_dssp             GSCH-----------HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTT
T ss_pred             hhhH-----------HHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHH
Confidence            0000           0000000112 3566666666665532    2333333 2356666666666654433    223


Q ss_pred             ccCCCCcEEeCCCCcCCCC-------CCCCccccCccceeecccCcce
Q 039161          212 ENMTALESLDLSFNKLDGR-------IPEQLLSVTALALLNLSYNRLW  252 (333)
Q Consensus       212 ~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~l~~N~l~  252 (333)
                      ..+++|+.|++++|.+.+.       ++..+..+++|+.||+++|++.
T Consensus       250 ~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~  297 (362)
T 3goz_A          250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH  297 (362)
T ss_dssp             TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred             hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence            4455566666666653321       2223445555666666666654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=2.4e-25  Score=197.86  Aligned_cols=241  Identities=16%  Similarity=0.209  Sum_probs=175.4

Q ss_pred             cccEEECcCCccccccchh----hhCCCCccEEECCCC---cCcCCCChhh-------cCCCCCcEEEccCCcCCC----
Q 039161            6 ELITLHLENNSLEGHIHNT----FANASHLRSLDLYSN---KLEGPLPRSL-------AKYIKLEVVNVENNMISD----   67 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n---~l~~~~p~~~-------~~l~~L~~L~L~~n~l~~----   67 (333)
                      +|++|+|++|.+++..+..    |..+++|++|+|++|   .+++.+|..+       ..+++|++|+|++|.+++    
T Consensus        33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  112 (386)
T 2ca6_A           33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE  112 (386)
T ss_dssp             CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred             CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence            7999999999998765544    668999999999996   4455566555       688999999999999987    


Q ss_pred             cccccccCCCCCCEEEcccCcCCCCCCCCCC--cccC---------CcccEEEcCCCcccc-cCCc--ccccChHHhhhh
Q 039161           68 SFPCWMGSLSELKILVLRSNQFDCPPCNSNI--TFPF---------QALRIIDLSHTEFTG-FLPR--RIFPSMEAMKNV  133 (333)
Q Consensus        68 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~~~l---------~~L~~L~ls~n~l~~-~~~~--~~~~~l~~L~~l  133 (333)
                      .++..+..+++|++|+|++|.++...+..+.  ...+         ++|++|++++|.++. .++.  ..+..+++|+.+
T Consensus       113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  192 (386)
T 2ca6_A          113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV  192 (386)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred             HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence            3667788899999999999988643322210  0122         899999999999873 3331  124455667777


Q ss_pred             cccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccC----ccchhhhhCCCCCCEEEccCCcCCCC---
Q 039161          134 DEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFH----GEISEVLGNFKSLKVLNLSHNSLTGN---  206 (333)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~---  206 (333)
                      ++.++...-...          ..........+++|+.|++++|.++    ..+|..+..+++|++|+|++|.+++.   
T Consensus       193 ~L~~n~l~~~g~----------~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          193 KMVQNGIRPEGI----------EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             ECCSSCCCHHHH----------HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             ECcCCCCCHhHH----------HHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence            776653110000          0000001223688999999999986    56788889999999999999999865   


Q ss_pred             -Ccccc--ccCCCCcEEeCCCCcCCC----CCCCCc-cccCccceeecccCcceecCC
Q 039161          207 -IPVSF--ENMTALESLDLSFNKLDG----RIPEQL-LSVTALALLNLSYNRLWGRIP  256 (333)
Q Consensus       207 -~~~~~--~~l~~L~~L~Ls~n~l~~----~~~~~~-~~l~~L~~L~l~~N~l~~~~p  256 (333)
                       ++..+  +.+++|++|+|++|.+++    .+|..+ ..+++|+.|++++|++++..|
T Consensus       263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence             45555  338999999999999996    377766 568999999999999985543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.89  E-value=4.3e-23  Score=180.82  Aligned_cols=194  Identities=16%  Similarity=0.147  Sum_probs=107.6

Q ss_pred             CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCC-hhhcCCCCCcE-EEccCCcCCCcccccccCCCCCC
Q 039161            3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLP-RSLAKYIKLEV-VNVENNMISDSFPCWMGSLSELK   80 (333)
Q Consensus         3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~   80 (333)
                      +|+++++|+|++|+|+.+.+++|.++++|++|+|++|++.+.+| .+|.+++++++ +++..|+++...|..|..+++|+
T Consensus        28 l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~  107 (350)
T 4ay9_X           28 LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ  107 (350)
T ss_dssp             CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred             cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence            34566667777777665555666667777777777766644333 35566666554 44555666655566666666777


Q ss_pred             EEEcccCcCCCCCCCCCCcccCCcccEEEcCC-CcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcc
Q 039161           81 ILVLRSNQFDCPPCNSNITFPFQALRIIDLSH-TEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHD  159 (333)
Q Consensus        81 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~-n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (333)
                      +|++++|++...++..+  ....++..+++.+ +.+. .++...+..+                                
T Consensus       108 ~L~l~~n~l~~~~~~~~--~~~~~l~~l~l~~~~~i~-~l~~~~f~~~--------------------------------  152 (350)
T 4ay9_X          108 YLLISNTGIKHLPDVHK--IHSLQKVLLDIQDNINIH-TIERNSFVGL--------------------------------  152 (350)
T ss_dssp             EEEEEEECCSSCCCCTT--CCBSSCEEEEEESCTTCC-EECTTSSTTS--------------------------------
T ss_pred             cccccccccccCCchhh--cccchhhhhhhccccccc-cccccchhhc--------------------------------
Confidence            77777766666655444  4445566666644 3343 3332222221                                


Q ss_pred             hhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccC-CcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCcccc
Q 039161          160 FQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSH-NSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSV  238 (333)
Q Consensus       160 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  238 (333)
                            ...++.|++++|+++...+..+ ...+|+++++++ |.++.+.+..|.++++|+.||+++|+|+...+..+..+
T Consensus       153 ------~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L  225 (350)
T 4ay9_X          153 ------SFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL  225 (350)
T ss_dssp             ------BSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTC
T ss_pred             ------chhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccc
Confidence                  2345556666666663333333 334566666653 44554444455666666666666666664333333333

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.89  E-value=4.6e-22  Score=185.56  Aligned_cols=223  Identities=23%  Similarity=0.244  Sum_probs=120.8

Q ss_pred             CcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEc
Q 039161            5 TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVL   84 (333)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   84 (333)
                      ++|++|++++|.++.. |.   .+++|++|+|++|++++ +|.   .+++|++|++++|.+++ +|.   .+++|+.|++
T Consensus        61 ~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L  128 (622)
T 3g06_A           61 AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWI  128 (622)
T ss_dssp             TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEEC
T ss_pred             CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEEC
Confidence            4566666666666633 22   35666666666666663 443   45566666666666653 222   3455555555


Q ss_pred             ccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCccccc-----------------ChHHhhhhcccCccc-cccccc
Q 039161           85 RSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFP-----------------SMEAMKNVDEQGRLE-YMGRAF  146 (333)
Q Consensus        85 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~-----------------~l~~L~~l~~~~~~~-~~~~~~  146 (333)
                      ++|+++..+.      .+++|++|++++|.+++ +|.. ..                 .+++|+.+++.+|.. .++...
T Consensus       129 ~~N~l~~lp~------~l~~L~~L~Ls~N~l~~-l~~~-~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~  200 (622)
T 3g06_A          129 FGNQLTSLPV------LPPGLQELSVSDNQLAS-LPAL-PSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLP  200 (622)
T ss_dssp             CSSCCSCCCC------CCTTCCEEECCSSCCSC-CCCC-CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCC
T ss_pred             CCCCCCcCCC------CCCCCCEEECcCCcCCC-cCCc-cCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCcc
Confidence            5555554332      13556666666665553 2211 11                 113344444443321 111000


Q ss_pred             ccCceEEeecC-cchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCC
Q 039161          147 CDESITVAMKG-HDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFN  225 (333)
Q Consensus       147 ~~~~~~~~~~~-~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  225 (333)
                       .......... ....+...+++|+.|++++|++++ +|   ..+++|+.|++++|.++. +|.   .+++|+.|+|++|
T Consensus       201 -~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N  271 (622)
T 3g06_A          201 -SELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRN  271 (622)
T ss_dssp             -TTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS
T ss_pred             -chhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCC
Confidence             0000000000 000111224667777777777774 44   345677788888887773 443   4577888888888


Q ss_pred             cCCCCCCCCccccCccceeecccCcceecCCC
Q 039161          226 KLDGRIPEQLLSVTALALLNLSYNRLWGRIPR  257 (333)
Q Consensus       226 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~  257 (333)
                      .++ .+|..+..+++|+.|++++|++++.+|.
T Consensus       272 ~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          272 QLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             CCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             CCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            887 6677777888888888888888766554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.89  E-value=6e-22  Score=179.18  Aligned_cols=226  Identities=21%  Similarity=0.274  Sum_probs=113.7

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCC------------------
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISD------------------   67 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~------------------   67 (333)
                      +|++|++++|++++ +|..   ..+|++|++++|++++ +| .+.++++|++|++++|.+++                  
T Consensus       154 ~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l  227 (454)
T 1jl5_A          154 FLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL  227 (454)
T ss_dssp             TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcC
Confidence            56666666666654 2322   2355555665555553 33 35555555555555555543                  


Q ss_pred             -cccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc-ccccc
Q 039161           68 -SFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGRA  145 (333)
Q Consensus        68 -~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~  145 (333)
                       .+| .+..+++|++|++++|++++.+.      ..++|++|++++|.+++ +|..    .++|+.+++.++.- .++..
T Consensus       228 ~~lp-~~~~l~~L~~L~l~~N~l~~l~~------~~~~L~~L~l~~N~l~~-l~~~----~~~L~~L~ls~N~l~~l~~~  295 (454)
T 1jl5_A          228 EELP-ELQNLPFLTTIYADNNLLKTLPD------LPPSLEALNVRDNYLTD-LPEL----PQSLTFLDVSENIFSGLSEL  295 (454)
T ss_dssp             SSCC-CCTTCTTCCEEECCSSCCSSCCS------CCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSEESCC
T ss_pred             Cccc-ccCCCCCCCEEECCCCcCCcccc------cccccCEEECCCCcccc-cCcc----cCcCCEEECcCCccCcccCc
Confidence             233 24445555555555555544321      12445555555555543 2221    24455555544321 11100


Q ss_pred             cccCceEEeecCc-chhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCC
Q 039161          146 FCDESITVAMKGH-DFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSF  224 (333)
Q Consensus       146 ~~~~~~~~~~~~~-~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  224 (333)
                       ............ ...+...+++|++|++++|++++ +|..   +++|++|++++|++++ +|.   .+++|++|++++
T Consensus       296 -~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~  366 (454)
T 1jl5_A          296 -PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEY  366 (454)
T ss_dssp             -CTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred             -CCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCC
Confidence             000001111100 00111223689999999999985 5543   5899999999999994 555   478999999999


Q ss_pred             CcCCC--CCCCCcccc-------------CccceeecccCccee--cCCCC
Q 039161          225 NKLDG--RIPEQLLSV-------------TALALLNLSYNRLWG--RIPRG  258 (333)
Q Consensus       225 n~l~~--~~~~~~~~l-------------~~L~~L~l~~N~l~~--~~p~~  258 (333)
                      |.+++  .+|..+..+             ++|+.|++++|++++  .+|..
T Consensus       367 N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s  417 (454)
T 1jl5_A          367 NPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES  417 (454)
T ss_dssp             SCCSSCCCCCTTCCEEECCC-------------------------------
T ss_pred             CCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhh
Confidence            99998  688888877             789999999999997  77764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.88  E-value=3.6e-22  Score=184.16  Aligned_cols=183  Identities=25%  Similarity=0.338  Sum_probs=144.6

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      +++.|++++|.+++ +|..+  .++|++|++++|.++ .+|   ..+++|++|++++|.+++ +|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            67888888888886 44433  377888888888888 566   456788888888888886 565 554  88888888


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI  165 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (333)
                      +|++++++.      .+++|+.|++++|.+++ +|..                                           
T Consensus       129 ~N~l~~lp~------~l~~L~~L~Ls~N~l~~-lp~~-------------------------------------------  158 (571)
T 3cvr_A          129 NNQLTMLPE------LPALLEYINADNNQLTM-LPEL-------------------------------------------  158 (571)
T ss_dssp             SSCCSCCCC------CCTTCCEEECCSSCCSC-CCCC-------------------------------------------
T ss_pred             CCcCCCCCC------cCccccEEeCCCCccCc-CCCc-------------------------------------------
Confidence            888887553      36788888888888874 4431                                           


Q ss_pred             hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCC-------cEEeCCCCcCCCCCCCCcccc
Q 039161          166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL-------ESLDLSFNKLDGRIPEQLLSV  238 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------~~L~Ls~n~l~~~~~~~~~~l  238 (333)
                      +++|+.|++++|.+++ +|. +.  ++|+.|+|++|.++ .+|. +..  +|       +.|+|++|.|+ .+|..+..+
T Consensus       159 l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l  229 (571)
T 3cvr_A          159 PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSL  229 (571)
T ss_dssp             CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGS
T ss_pred             CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcC
Confidence            5788999999999996 666 65  89999999999999 5555 554  77       99999999999 678888889


Q ss_pred             CccceeecccCcceecCCCC
Q 039161          239 TALALLNLSYNRLWGRIPRG  258 (333)
Q Consensus       239 ~~L~~L~l~~N~l~~~~p~~  258 (333)
                      ++|+.|++++|++++.+|..
T Consensus       230 ~~L~~L~L~~N~l~~~~p~~  249 (571)
T 3cvr_A          230 DPTCTIILEDNPLSSRIRES  249 (571)
T ss_dssp             CTTEEEECCSSSCCHHHHHH
T ss_pred             CCCCEEEeeCCcCCCcCHHH
Confidence            99999999999999877753

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=3.7e-22  Score=171.69  Aligned_cols=188  Identities=17%  Similarity=0.293  Sum_probs=154.6

Q ss_pred             EECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcC
Q 039161           10 LHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQF   89 (333)
Q Consensus        10 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   89 (333)
                      +.+..+.+++...  +..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|++
T Consensus        24 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l   97 (308)
T 1h6u_A           24 IAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL   97 (308)
T ss_dssp             HHTTCSSTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred             HHhCCCCcCceec--HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcC
Confidence            3455556654333  4568899999999999984 55 68899999999999999996544  89999999999999999


Q ss_pred             CCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhcc
Q 039161           90 DCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMF  169 (333)
Q Consensus        90 ~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  169 (333)
                      ++..  .+  ..+++|++|++++|.+++. +.  +..                                       +++|
T Consensus        98 ~~~~--~~--~~l~~L~~L~l~~n~l~~~-~~--l~~---------------------------------------l~~L  131 (308)
T 1h6u_A           98 KNVS--AI--AGLQSIKTLDLTSTQITDV-TP--LAG---------------------------------------LSNL  131 (308)
T ss_dssp             SCCG--GG--TTCTTCCEEECTTSCCCCC-GG--GTT---------------------------------------CTTC
T ss_pred             CCch--hh--cCCCCCCEEECCCCCCCCc-hh--hcC---------------------------------------CCCC
Confidence            8764  23  7789999999999998853 21  111                                       6789


Q ss_pred             ceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccC
Q 039161          170 RAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYN  249 (333)
Q Consensus       170 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N  249 (333)
                      ++|++++|.+++..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|
T Consensus       132 ~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N  205 (308)
T 1h6u_A          132 QVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNN  205 (308)
T ss_dssp             CEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTS
T ss_pred             CEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCC
Confidence            999999999985544  8899999999999999996544  8899999999999999996544  788999999999999


Q ss_pred             cceecC
Q 039161          250 RLWGRI  255 (333)
Q Consensus       250 ~l~~~~  255 (333)
                      ++++..
T Consensus       206 ~l~~~~  211 (308)
T 1h6u_A          206 QISDVS  211 (308)
T ss_dssp             CCCBCG
T ss_pred             ccCccc
Confidence            998544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.88  E-value=3.8e-22  Score=161.81  Aligned_cols=86  Identities=20%  Similarity=0.267  Sum_probs=67.6

Q ss_pred             hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161          166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN  245 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  245 (333)
                      +++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+       .+++++.|+
T Consensus        99 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~  171 (208)
T 2o6s_A           99 LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLS  171 (208)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHH
T ss_pred             ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHH
Confidence            4556666777777765556667788888899999888887777778888899999999997764       356788999


Q ss_pred             cccCcceecCCCC
Q 039161          246 LSYNRLWGRIPRG  258 (333)
Q Consensus       246 l~~N~l~~~~p~~  258 (333)
                      ++.|.++|.+|..
T Consensus       172 ~~~n~~~g~ip~~  184 (208)
T 2o6s_A          172 EWINKHSGVVRNS  184 (208)
T ss_dssp             HHHHHCTTTBBCT
T ss_pred             HHHHhCCceeecc
Confidence            9999999988864

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.88  E-value=8.7e-22  Score=159.72  Aligned_cols=182  Identities=16%  Similarity=0.186  Sum_probs=145.3

Q ss_pred             ccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEccc
Q 039161            7 LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRS   86 (333)
Q Consensus         7 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   86 (333)
                      -+.++.+++.++.. |..+  .++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|++|++++
T Consensus         9 ~~~v~c~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A            9 GTTVECYSQGRTSV-PTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TTEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCccCC-CCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            46778888888744 3333  46899999999999977777788899999999999999876666788899999999999


Q ss_pred             CcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhh
Q 039161           87 NQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIF  166 (333)
Q Consensus        87 n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (333)
                      |++++.++..+  ..+++|++|++++|.+++..+ ..+..                                       +
T Consensus        86 n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~-~~~~~---------------------------------------l  123 (208)
T 2o6s_A           86 NQLQSLPNGVF--DKLTQLKELALNTNQLQSLPD-GVFDK---------------------------------------L  123 (208)
T ss_dssp             SCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCT-TTTTT---------------------------------------C
T ss_pred             CcCCccCHhHh--cCccCCCEEEcCCCcCcccCH-hHhcc---------------------------------------C
Confidence            99988877665  778899999999998884333 22221                                       5


Q ss_pred             hccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCc
Q 039161          167 VMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA  240 (333)
Q Consensus       167 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  240 (333)
                      ++|++|++++|++++..+..+..+++|++|++++|.+.+       .+++|+.|+++.|.+++.+|..++.++.
T Consensus       124 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          124 TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             CcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence            778899999999987777778889999999999998774       4567889999999999988887776553

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=1.8e-23  Score=182.29  Aligned_cols=224  Identities=17%  Similarity=0.149  Sum_probs=139.3

Q ss_pred             cccEEECcCCccccccchhhhCC--CCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCc-ccccccCCCCCCEE
Q 039161            6 ELITLHLENNSLEGHIHNTFANA--SHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDS-FPCWMGSLSELKIL   82 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L   82 (333)
                      .++.++++++.+.   +..+..+  ++++.|++++|.+++..+. +..+++|++|++++|.+++. .+..+..+++|++|
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            3566777776655   3445555  6677777777777655444 44567777777777776644 55566667777777


Q ss_pred             EcccCcCCCCCCCCCCcccCCcccEEEcCCC-cccccCCcccccChHHhhhhcccCc-ccccccccccCceEEeecCcch
Q 039161           83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHT-EFTGFLPRRIFPSMEAMKNVDEQGR-LEYMGRAFCDESITVAMKGHDF  160 (333)
Q Consensus        83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~l~~L~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~  160 (333)
                      ++++|.+++..+..+  ..+++|++|++++| .+++......+..+++|+.+++.++ ...-              ....
T Consensus       124 ~L~~~~l~~~~~~~l--~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~--------------~~~~  187 (336)
T 2ast_B          124 SLEGLRLSDPIVNTL--AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE--------------KHVQ  187 (336)
T ss_dssp             ECTTCBCCHHHHHHH--TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH--------------HHHH
T ss_pred             eCcCcccCHHHHHHH--hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh--------------HHHH
Confidence            777776654433333  44667777777776 4553211223445556666665543 1000              0001


Q ss_pred             hhhhhhh-ccceEEccCc--ccC-ccchhhhhCCCCCCEEEccCCc-CCCCCccccccCCCCcEEeCCCCc-CCCCCCCC
Q 039161          161 QLQNIFV-MFRAMDFSSN--RFH-GEISEVLGNFKSLKVLNLSHNS-LTGNIPVSFENMTALESLDLSFNK-LDGRIPEQ  234 (333)
Q Consensus       161 ~~~~~~~-~L~~L~ls~n--~l~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~  234 (333)
                      .....++ +|++|++++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......
T Consensus       188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  267 (336)
T 2ast_B          188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE  267 (336)
T ss_dssp             HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred             HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence            1223356 8888888888  454 3556667778888888888887 666667777788888888888884 33222235


Q ss_pred             ccccCccceeecccC
Q 039161          235 LLSVTALALLNLSYN  249 (333)
Q Consensus       235 ~~~l~~L~~L~l~~N  249 (333)
                      +..+++|+.|++++|
T Consensus       268 l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          268 LGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGCTTCCEEECTTS
T ss_pred             HhcCCCCCEEeccCc
Confidence            667788888888887

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.87  E-value=6.7e-21  Score=177.71  Aligned_cols=238  Identities=21%  Similarity=0.236  Sum_probs=156.2

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      .+++|++++|.++ .+|..+.  ++|++|++++|.++ .+|.   .+++|++|+|++|.++. +|.   .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence            5889999999999 5565554  89999999999999 4665   57899999999999984 554   67999999999


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc-ccccccccCceEEeecC-cchhhh
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGRAFCDESITVAMKG-HDFQLQ  163 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~  163 (333)
                      +|.+++.+.      .+++|+.|++++|.++. +|..    +++|+.|++..|.. .++.. ......+.... ....+.
T Consensus       110 ~N~l~~l~~------~l~~L~~L~L~~N~l~~-lp~~----l~~L~~L~Ls~N~l~~l~~~-~~~L~~L~L~~N~l~~l~  177 (622)
T 3g06_A          110 SNPLTHLPA------LPSGLCKLWIFGNQLTS-LPVL----PPGLQELSVSDNQLASLPAL-PSELCKLWAYNNQLTSLP  177 (622)
T ss_dssp             SCCCCCCCC------CCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSCCCCC-CTTCCEEECCSSCCSCCC
T ss_pred             CCcCCCCCC------CCCCcCEEECCCCCCCc-CCCC----CCCCCEEECcCCcCCCcCCc-cCCCCEEECCCCCCCCCc
Confidence            999998764      46899999999999984 5543    37788888876632 11111 11100110000 000011


Q ss_pred             hhhhccceEEccCcccCccchhhhh-----------------CCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCc
Q 039161          164 NIFVMFRAMDFSSNRFHGEISEVLG-----------------NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNK  226 (333)
Q Consensus       164 ~~~~~L~~L~ls~n~l~~~~~~~~~-----------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  226 (333)
                      ..+++|+.|++++|.+++ +|..+.                 .+++|+.|++++|.+++ +|   ..+++|+.|++++|.
T Consensus       178 ~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~  252 (622)
T 3g06_A          178 MLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNR  252 (622)
T ss_dssp             CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSC
T ss_pred             ccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCC
Confidence            224556666666666653 222111                 12567777777777774 34   345778888888888


Q ss_pred             CCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCCCC
Q 039161          227 LDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLT  281 (333)
Q Consensus       227 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~  281 (333)
                      ++ .+|.   .+++|+.|++++|.++ .+|..     +........+.+.+|++.
T Consensus       253 L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~-----l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          253 LT-SLPM---LPSGLLSLSVYRNQLT-RLPES-----LIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             CS-CCCC---CCTTCCEEECCSSCCC-SCCGG-----GGGSCTTCEEECCSCCCC
T ss_pred             CC-cCCc---ccccCcEEeCCCCCCC-cCCHH-----HhhccccCEEEecCCCCC
Confidence            87 4554   4577888888888887 66642     222233344455566554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=5e-23  Score=181.29  Aligned_cols=264  Identities=16%  Similarity=0.133  Sum_probs=185.7

Q ss_pred             EEECcCCccccccchhhhCCCCccEEECCCCcCcCCCC----hhhcCCC-CCcEEEccCCcCCCcccccccCC-----CC
Q 039161            9 TLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLP----RSLAKYI-KLEVVNVENNMISDSFPCWMGSL-----SE   78 (333)
Q Consensus         9 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~   78 (333)
                      .++++.|.+++.+|..+...++|++|++++|.+++..+    ..|..++ +|++|+|++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46899999999999888777789999999999997777    7788898 89999999999998777767664     99


Q ss_pred             CCEEEcccCcCCCCCCCCCC--cccC-CcccEEEcCCCcccccCCccccc---C-hHHhhhhcccCcccccccccccCce
Q 039161           79 LKILVLRSNQFDCPPCNSNI--TFPF-QALRIIDLSHTEFTGFLPRRIFP---S-MEAMKNVDEQGRLEYMGRAFCDESI  151 (333)
Q Consensus        79 L~~L~L~~n~l~~~~~~~~~--~~~l-~~L~~L~ls~n~l~~~~~~~~~~---~-l~~L~~l~~~~~~~~~~~~~~~~~~  151 (333)
                      |++|++++|.+++..+..+.  .... ++|++|++++|.+++..+..+..   . .++|+.+++.+|.-.-...      
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~------  155 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS------  155 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH------
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH------
Confidence            99999999999876654320  1233 79999999999998655433222   2 2477778777653110000      


Q ss_pred             EEeecCcchhhhhhhhccceEEccCcccCccchhhh----hCC-CCCCEEEccCCcCCCC----Ccccccc-CCCCcEEe
Q 039161          152 TVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVL----GNF-KSLKVLNLSHNSLTGN----IPVSFEN-MTALESLD  221 (333)
Q Consensus       152 ~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~----~~l-~~L~~L~Ls~n~l~~~----~~~~~~~-l~~L~~L~  221 (333)
                          ......+....+.|++|++++|++++..+..+    ..+ ++|++|+|++|.+++.    ++..+.. .++|++|+
T Consensus       156 ----~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~  231 (362)
T 3goz_A          156 ----DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN  231 (362)
T ss_dssp             ----HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEE
T ss_pred             ----HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEE
Confidence                00000111112489999999999987776544    445 5999999999999864    3445555 45999999


Q ss_pred             CCCCcCCCCCC----CCccccCccceeecccCcceecCCCCC--ccCCccccccccccCCCCCCCCC
Q 039161          222 LSFNKLDGRIP----EQLLSVTALALLNLSYNRLWGRIPRGN--QFNTFQNDSYIGNIRLCGEPLTV  282 (333)
Q Consensus       222 Ls~n~l~~~~~----~~~~~l~~L~~L~l~~N~l~~~~p~~~--~~~~~~~~~~~~~~~l~g~~~~~  282 (333)
                      |++|.+++..+    ..+..+++|+.|++++|.+.+..+...  ....+.........++.+|++..
T Consensus       232 Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             CCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             CcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            99999987544    345677899999999999542211100  01123333444556777776654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.86  E-value=2.3e-21  Score=165.39  Aligned_cols=186  Identities=17%  Similarity=0.280  Sum_probs=148.3

Q ss_pred             EECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcC
Q 039161           10 LHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQF   89 (333)
Q Consensus        10 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   89 (333)
                      +.+..+.+++..+  +..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|.+
T Consensus        29 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l  102 (291)
T 1h6t_A           29 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV  102 (291)
T ss_dssp             HHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             HHhcCCCcccccc--hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence            4455666654433  4567889999999999884 34 48889999999999999986544  88899999999999998


Q ss_pred             CCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhcc
Q 039161           90 DCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMF  169 (333)
Q Consensus        90 ~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  169 (333)
                      ++...  +  ..+++|++|++++|.+++. +.  +.                                       .+++|
T Consensus       103 ~~~~~--l--~~l~~L~~L~L~~n~i~~~-~~--l~---------------------------------------~l~~L  136 (291)
T 1h6t_A          103 KDLSS--L--KDLKKLKSLSLEHNGISDI-NG--LV---------------------------------------HLPQL  136 (291)
T ss_dssp             CCGGG--G--TTCTTCCEEECTTSCCCCC-GG--GG---------------------------------------GCTTC
T ss_pred             CCChh--h--ccCCCCCEEECCCCcCCCC-hh--hc---------------------------------------CCCCC
Confidence            87542  2  6788999999999988742 21  11                                       16788


Q ss_pred             ceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccC
Q 039161          170 RAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYN  249 (333)
Q Consensus       170 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N  249 (333)
                      +.|++++|++++.  ..+..+++|+.|++++|.+++..+  +..+++|++|++++|.+++ ++ .+..+++|+.|++++|
T Consensus       137 ~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          137 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQ  210 (291)
T ss_dssp             CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEE
T ss_pred             CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCC
Confidence            9999999999854  568889999999999999997655  8889999999999999985 44 3788999999999999


Q ss_pred             ccee
Q 039161          250 RLWG  253 (333)
Q Consensus       250 ~l~~  253 (333)
                      +++.
T Consensus       211 ~i~~  214 (291)
T 1h6t_A          211 ECLN  214 (291)
T ss_dssp             EEEC
T ss_pred             cccC
Confidence            9973

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=1.7e-22  Score=176.05  Aligned_cols=235  Identities=15%  Similarity=0.134  Sum_probs=180.6

Q ss_pred             CcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCC-CChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEE
Q 039161            5 TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGP-LPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILV   83 (333)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   83 (333)
                      +.++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            4799999999999987776 55799999999999999865 788889999999999999999988888899999999999


Q ss_pred             cccC-cCCCC-CCCCCCcccCCcccEEEcCCC-cccccCCcccccChH-HhhhhcccCcccccccccccCceEEeecCcc
Q 039161           84 LRSN-QFDCP-PCNSNITFPFQALRIIDLSHT-EFTGFLPRRIFPSME-AMKNVDEQGRLEYMGRAFCDESITVAMKGHD  159 (333)
Q Consensus        84 L~~n-~l~~~-~~~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~l~-~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (333)
                      +++| .+++. .+..+  ..+++|++|++++| .+++......+..++ +|+.+++.++...+..            ...
T Consensus       149 L~~~~~l~~~~l~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~------------~~l  214 (336)
T 2ast_B          149 LSGCSGFSEFALQTLL--SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK------------SDL  214 (336)
T ss_dssp             CTTCBSCCHHHHHHHH--HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH------------HHH
T ss_pred             CCCCCCCCHHHHHHHH--hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH------------HHH
Confidence            9999 56532 12112  56899999999999 888542223356667 8888887765311110            011


Q ss_pred             hhhhhhhhccceEEccCcc-cCccchhhhhCCCCCCEEEccCCc-CCCCCccccccCCCCcEEeCCCCcCCCCCCCCccc
Q 039161          160 FQLQNIFVMFRAMDFSSNR-FHGEISEVLGNFKSLKVLNLSHNS-LTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS  237 (333)
Q Consensus       160 ~~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  237 (333)
                      ......+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| ++.   ..+..
T Consensus       215 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~  290 (336)
T 2ast_B          215 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQL  290 (336)
T ss_dssp             HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHH
T ss_pred             HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHH
Confidence            1233447899999999999 777778889999999999999995 33222236788999999999999 432   23444


Q ss_pred             c-CccceeecccCcceecCCCC
Q 039161          238 V-TALALLNLSYNRLWGRIPRG  258 (333)
Q Consensus       238 l-~~L~~L~l~~N~l~~~~p~~  258 (333)
                      + .++..|++++|.+++..|..
T Consensus       291 l~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          291 LKEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             HHHHSTTSEESCCCSCCTTCSS
T ss_pred             HHhhCcceEEecccCccccCCc
Confidence            4 34888889999999887764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.85  E-value=4.8e-21  Score=168.46  Aligned_cols=176  Identities=19%  Similarity=0.175  Sum_probs=101.4

Q ss_pred             cEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhc-CCCCCcEEEccCCcCCCcccccccCCCCCCEEEccc
Q 039161            8 ITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLA-KYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRS   86 (333)
Q Consensus         8 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   86 (333)
                      ++++++++.++. +|..+.  ..++.|+|++|++++..+..|. ++++|++|+|++|.+++..+..|..+++|++|+|++
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            456666666663 333332  3466677777776665555565 666677777777766655555666666677777776


Q ss_pred             CcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhh
Q 039161           87 NQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIF  166 (333)
Q Consensus        87 n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (333)
                      |+++...+..+  ..+++|++|++++|.+++..+.. +..                                       +
T Consensus        98 N~l~~~~~~~~--~~l~~L~~L~L~~N~i~~~~~~~-~~~---------------------------------------l  135 (361)
T 2xot_A           98 NHLHTLDEFLF--SDLQALEVLLLYNNHIVVVDRNA-FED---------------------------------------M  135 (361)
T ss_dssp             SCCCEECTTTT--TTCTTCCEEECCSSCCCEECTTT-TTT---------------------------------------C
T ss_pred             CcCCcCCHHHh--CCCcCCCEEECCCCcccEECHHH-hCC---------------------------------------c
Confidence            66666555544  55666666666666665332221 111                                       4


Q ss_pred             hccceEEccCcccCccchhhh---hCCCCCCEEEccCCcCCCCCccccccCCC--CcEEeCCCCcCC
Q 039161          167 VMFRAMDFSSNRFHGEISEVL---GNFKSLKVLNLSHNSLTGNIPVSFENMTA--LESLDLSFNKLD  228 (333)
Q Consensus       167 ~~L~~L~ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~Ls~n~l~  228 (333)
                      ++|+.|++++|++++..+..+   ..+++|+.|+|++|++++..+..+..++.  ++.|+|++|.+.
T Consensus       136 ~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          136 AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             TTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             ccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            555666666666664333333   34566666666666666544455555554  255666666555

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.85  E-value=1.1e-20  Score=161.11  Aligned_cols=168  Identities=18%  Similarity=0.253  Sum_probs=143.4

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      +|++|++++|.++.. + .+..+++|++|++++|++++..+  +.++++|++|++++|.+++ ++ .+..+++|++|+++
T Consensus        47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~  120 (291)
T 1h6t_A           47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE  120 (291)
T ss_dssp             TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred             cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECC
Confidence            799999999999865 3 48899999999999999996544  8999999999999999985 33 48999999999999


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI  165 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (333)
                      +|++++..  .+  ..+++|+.|++++|.+++. + . +.                                       .
T Consensus       121 ~n~i~~~~--~l--~~l~~L~~L~l~~n~l~~~-~-~-l~---------------------------------------~  154 (291)
T 1h6t_A          121 HNGISDIN--GL--VHLPQLESLYLGNNKITDI-T-V-LS---------------------------------------R  154 (291)
T ss_dssp             TSCCCCCG--GG--GGCTTCCEEECCSSCCCCC-G-G-GG---------------------------------------G
T ss_pred             CCcCCCCh--hh--cCCCCCCEEEccCCcCCcc-h-h-hc---------------------------------------c
Confidence            99998763  23  6789999999999998843 1 1 11                                       1


Q ss_pred             hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCC
Q 039161          166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDG  229 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  229 (333)
                      +++|+.|++++|.+++..+  +..+++|+.|++++|.+++. + .+..+++|+.|++++|.+..
T Consensus       155 l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          155 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence            6789999999999996555  88999999999999999964 4 48899999999999999985

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.85  E-value=5.6e-21  Score=156.17  Aligned_cols=91  Identities=23%  Similarity=0.213  Sum_probs=69.7

Q ss_pred             hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161          166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN  245 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  245 (333)
                      +++|++|++++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|+.|+|++|.+++..|..+..+++|+.|+
T Consensus        80 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  159 (220)
T 2v70_A           80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN  159 (220)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence            34556666666666666666677788888888888888877778888888888888888888877788888888888888


Q ss_pred             cccCcceecCC
Q 039161          246 LSYNRLWGRIP  256 (333)
Q Consensus       246 l~~N~l~~~~p  256 (333)
                      +++|++.+..+
T Consensus       160 L~~N~l~c~c~  170 (220)
T 2v70_A          160 LLANPFNCNCY  170 (220)
T ss_dssp             CCSCCEECSGG
T ss_pred             ecCcCCcCCCc
Confidence            88888875443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.84  E-value=9.8e-21  Score=176.36  Aligned_cols=189  Identities=17%  Similarity=0.276  Sum_probs=143.3

Q ss_pred             ccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEccc
Q 039161            7 LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRS   86 (333)
Q Consensus         7 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   86 (333)
                      +..+.+..+.+.+..+  +..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++..+  +..+++|+.|+|++
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence            3445566666665444  4577888889999888874 44 57888899999999998886544  78888999999999


Q ss_pred             CcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhh
Q 039161           87 NQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIF  166 (333)
Q Consensus        87 n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (333)
                      |.+.+.+  .+  ..+++|+.|++++|.+++. +.  +.                                       .+
T Consensus        97 N~l~~l~--~l--~~l~~L~~L~Ls~N~l~~l-~~--l~---------------------------------------~l  130 (605)
T 1m9s_A           97 NKIKDLS--SL--KDLKKLKSLSLEHNGISDI-NG--LV---------------------------------------HL  130 (605)
T ss_dssp             SCCCCCT--TS--TTCTTCCEEECTTSCCCCC-GG--GG---------------------------------------GC
T ss_pred             CCCCCCh--hh--ccCCCCCEEEecCCCCCCC-cc--cc---------------------------------------CC
Confidence            8888754  23  6788899999998888742 21  11                                       15


Q ss_pred             hccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeec
Q 039161          167 VMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL  246 (333)
Q Consensus       167 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l  246 (333)
                      ++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|.+++.  ..+..+++|+.|+|
T Consensus       131 ~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L  204 (605)
T 1m9s_A          131 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLEL  204 (605)
T ss_dssp             TTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEC
T ss_pred             CccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEc
Confidence            7788888888888854  557788888888888888886655  77888888888888888853  35777888888888


Q ss_pred             ccCccee
Q 039161          247 SYNRLWG  253 (333)
Q Consensus       247 ~~N~l~~  253 (333)
                      ++|++++
T Consensus       205 ~~N~l~~  211 (605)
T 1m9s_A          205 FSQECLN  211 (605)
T ss_dssp             CSEEEEC
T ss_pred             cCCcCcC
Confidence            8888874

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.84  E-value=9.7e-21  Score=166.53  Aligned_cols=178  Identities=22%  Similarity=0.248  Sum_probs=138.0

Q ss_pred             ccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCccccccc-CCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEE
Q 039161           31 LRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMG-SLSELKILVLRSNQFDCPPCNSNITFPFQALRIID  109 (333)
Q Consensus        31 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~  109 (333)
                      -+.++++++.++ .+|..+.  ..++.|+|++|.+++..+..|. .+++|++|+|++|++++..+..+  ..+++|++|+
T Consensus        20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~--~~l~~L~~L~   94 (361)
T 2xot_A           20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF--VPVPNLRYLD   94 (361)
T ss_dssp             TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEE
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhc--cCCCCCCEEE
Confidence            367889988888 4665553  3588899999999877777777 88899999999999888887766  7788999999


Q ss_pred             cCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhhhC
Q 039161          110 LSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGN  189 (333)
Q Consensus       110 ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~  189 (333)
                      +++|.++...+ ..+..                                       +++|+.|++++|++++..+..|..
T Consensus        95 Ls~N~l~~~~~-~~~~~---------------------------------------l~~L~~L~L~~N~i~~~~~~~~~~  134 (361)
T 2xot_A           95 LSSNHLHTLDE-FLFSD---------------------------------------LQALEVLLLYNNHIVVVDRNAFED  134 (361)
T ss_dssp             CCSSCCCEECT-TTTTT---------------------------------------CTTCCEEECCSSCCCEECTTTTTT
T ss_pred             CCCCcCCcCCH-HHhCC---------------------------------------CcCCCEEECCCCcccEECHHHhCC
Confidence            99998874332 22221                                       577888999999988777888888


Q ss_pred             CCCCCEEEccCCcCCCCCcccc---ccCCCCcEEeCCCCcCCCCCCCCccccCc--cceeecccCccee
Q 039161          190 FKSLKVLNLSHNSLTGNIPVSF---ENMTALESLDLSFNKLDGRIPEQLLSVTA--LALLNLSYNRLWG  253 (333)
Q Consensus       190 l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~l~~N~l~~  253 (333)
                      +++|+.|+|++|.+++..+..|   ..+++|+.|+|++|.++...+..+..++.  ++.|++++|++.+
T Consensus       135 l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          135 MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence            9999999999999986655555   56888999999999998655566777776  4788999988863

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=1.7e-20  Score=164.35  Aligned_cols=205  Identities=15%  Similarity=0.147  Sum_probs=158.4

Q ss_pred             ccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCccc-ccccCCCCCCE-EEc
Q 039161            7 LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFP-CWMGSLSELKI-LVL   84 (333)
Q Consensus         7 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~L   84 (333)
                      -++++-++++++ .+|..+  .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.++ .+|..++++++ +.+
T Consensus        11 ~~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           11 NRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TTEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CCEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            367788889998 455544  3689999999999997667789999999999999999876555 57888998876 566


Q ss_pred             ccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhh
Q 039161           85 RSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQN  164 (333)
Q Consensus        85 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (333)
                      ..|+++...+..+  ..+++|++|++++|.++...+.. +..                                      
T Consensus        88 ~~N~l~~l~~~~f--~~l~~L~~L~l~~n~l~~~~~~~-~~~--------------------------------------  126 (350)
T 4ay9_X           88 KANNLLYINPEAF--QNLPNLQYLLISNTGIKHLPDVH-KIH--------------------------------------  126 (350)
T ss_dssp             EETTCCEECTTSB--CCCTTCCEEEEEEECCSSCCCCT-TCC--------------------------------------
T ss_pred             cCCcccccCchhh--hhccccccccccccccccCCchh-hcc--------------------------------------
Confidence            6799999888877  78999999999999998443322 111                                      


Q ss_pred             hhhccceEEccC-cccCccchhhhhCCC-CCCEEEccCCcCCCCCccccccCCCCcEEeCCC-CcCCCCCCCCccccCcc
Q 039161          165 IFVMFRAMDFSS-NRFHGEISEVLGNFK-SLKVLNLSHNSLTGNIPVSFENMTALESLDLSF-NKLDGRIPEQLLSVTAL  241 (333)
Q Consensus       165 ~~~~L~~L~ls~-n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L  241 (333)
                       ...+..+++.+ +.+....+..|..+. .++.|++++|+++.+.+..| ...+|+.|++++ |.++...++.|..+++|
T Consensus       127 -~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L  204 (350)
T 4ay9_X          127 -SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGP  204 (350)
T ss_dssp             -BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECC
T ss_pred             -cchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCccc
Confidence             23456677765 567655556666654 68899999999996555555 457899999985 67775555678999999


Q ss_pred             ceeecccCcceecCCCC
Q 039161          242 ALLNLSYNRLWGRIPRG  258 (333)
Q Consensus       242 ~~L~l~~N~l~~~~p~~  258 (333)
                      +.||+++|+|+ .+|..
T Consensus       205 ~~LdLs~N~l~-~lp~~  220 (350)
T 4ay9_X          205 VILDISRTRIH-SLPSY  220 (350)
T ss_dssp             SEEECTTSCCC-CCCSS
T ss_pred             chhhcCCCCcC-ccChh
Confidence            99999999998 66653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=2.8e-23  Score=184.57  Aligned_cols=245  Identities=15%  Similarity=0.173  Sum_probs=173.9

Q ss_pred             ccchhhhCCCCccEEECCCCcCcCCCC----hhhcCCCCCcEEEccCCcC---CCcccccc-------cCCCCCCEEEcc
Q 039161           20 HIHNTFANASHLRSLDLYSNKLEGPLP----RSLAKYIKLEVVNVENNMI---SDSFPCWM-------GSLSELKILVLR   85 (333)
Q Consensus        20 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~L~~n~l---~~~~~~~~-------~~l~~L~~L~L~   85 (333)
                      .++..+..+++|++|+|++|.++...+    ..+..+++|++|+|++|.+   ++.+|..+       ..+++|++|+|+
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            455677889999999999999986544    3467899999999999754   44445444       688999999999


Q ss_pred             cCcCCCCC----CCCCCcccCCcccEEEcCCCcccccCCcccccCh------------HHhhhhcccCcccccccccccC
Q 039161           86 SNQFDCPP----CNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSM------------EAMKNVDEQGRLEYMGRAFCDE  149 (333)
Q Consensus        86 ~n~l~~~~----~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l------------~~L~~l~~~~~~~~~~~~~~~~  149 (333)
                      +|.+....    +..+  ..+++|++|++++|.++...+..+...+            +.|+.+++.++...-       
T Consensus       103 ~n~l~~~~~~~l~~~l--~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~-------  173 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFL--SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN-------  173 (386)
T ss_dssp             SCCCCTTTHHHHHHHH--HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG-------
T ss_pred             CCcCCHHHHHHHHHHH--HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc-------
Confidence            99988632    2222  5689999999999999754433322222            455566665542110       


Q ss_pred             ceEEeecCcch---hhhhhhhccceEEccCcccCc-----cchhhhhCCCCCCEEEccCCcCC----CCCccccccCCCC
Q 039161          150 SITVAMKGHDF---QLQNIFVMFRAMDFSSNRFHG-----EISEVLGNFKSLKVLNLSHNSLT----GNIPVSFENMTAL  217 (333)
Q Consensus       150 ~~~~~~~~~~~---~~~~~~~~L~~L~ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L  217 (333)
                             ....   .....++.|++|++++|+++.     ..+..+..+++|+.|+|++|.++    ..+|..+..+++|
T Consensus       174 -------~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L  246 (386)
T 2ca6_A          174 -------GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL  246 (386)
T ss_dssp             -------GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred             -------HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc
Confidence                   0001   122346799999999999983     33447889999999999999996    5678888999999


Q ss_pred             cEEeCCCCcCCCC----CCCCcc--ccCccceeecccCccee----cCCCCCccCCccccccccccCCCCCCCCCCC
Q 039161          218 ESLDLSFNKLDGR----IPEQLL--SVTALALLNLSYNRLWG----RIPRGNQFNTFQNDSYIGNIRLCGEPLTVRC  284 (333)
Q Consensus       218 ~~L~Ls~n~l~~~----~~~~~~--~l~~L~~L~l~~N~l~~----~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C  284 (333)
                      ++|+|++|.+++.    ++..+.  .+++|+.|++++|.+++    .+|....    ........+.+.+|++...+
T Consensus       247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~----~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID----EKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH----HHCTTCCEEECTTSBSCTTS
T ss_pred             CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH----hcCCCceEEEccCCcCCcch
Confidence            9999999999865    455553  38999999999999986    3654320    11123334456666655443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.84  E-value=3.4e-20  Score=151.53  Aligned_cols=80  Identities=19%  Similarity=0.212  Sum_probs=37.2

Q ss_pred             cEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcC
Q 039161           32 RSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLS  111 (333)
Q Consensus        32 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls  111 (333)
                      +.++++++.++ .+|..+.  +++++|++++|.+++..+..|..+++|++|++++|.+++..+..+  ..+++|++|+++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~--~~l~~L~~L~Ls   88 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF--QGLRSLNSLVLY   88 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT--TTCSSCCEEECC
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh--hCCcCCCEEECC
Confidence            34455555554 2333322  345555555555554444445555555555555555544444333  334444444444


Q ss_pred             CCccc
Q 039161          112 HTEFT  116 (333)
Q Consensus       112 ~n~l~  116 (333)
                      +|.++
T Consensus        89 ~N~l~   93 (220)
T 2v9t_B           89 GNKIT   93 (220)
T ss_dssp             SSCCC
T ss_pred             CCcCC
Confidence            44443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.84  E-value=5.4e-23  Score=186.96  Aligned_cols=132  Identities=19%  Similarity=0.189  Sum_probs=93.1

Q ss_pred             cccEEECcCCcccc----ccchhhhCCCCccEEECCCCcCcCCCChhhc-----CCCCCcEEEccCCcCCCcc----ccc
Q 039161            6 ELITLHLENNSLEG----HIHNTFANASHLRSLDLYSNKLEGPLPRSLA-----KYIKLEVVNVENNMISDSF----PCW   72 (333)
Q Consensus         6 ~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~L~~n~l~~~~----~~~   72 (333)
                      +|++|+|++|.++.    .++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++..    +..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            69999999999984    5588889999999999999998755444433     2567999999999888643    455


Q ss_pred             ccCCCCCCEEEcccCcCCCCCCCCCC---cccCCcccEEEcCCCccccc----CCcccccChHHhhhhcccCc
Q 039161           73 MGSLSELKILVLRSNQFDCPPCNSNI---TFPFQALRIIDLSHTEFTGF----LPRRIFPSMEAMKNVDEQGR  138 (333)
Q Consensus        73 ~~~l~~L~~L~L~~n~l~~~~~~~~~---~~~l~~L~~L~ls~n~l~~~----~~~~~~~~l~~L~~l~~~~~  138 (333)
                      +..+++|++|++++|.+.......+.   ....++|++|++++|.+++.    ++. .+..+++|+.+++.++
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n  237 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG-IVASKASLRELALGSN  237 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH-HHHHCTTCCEEECCSS
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH-HHHhCCCccEEeccCC
Confidence            66778999999999887543222110   01245888888888887753    222 2345566777777665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.84  E-value=1.1e-19  Score=149.39  Aligned_cols=153  Identities=23%  Similarity=0.336  Sum_probs=91.9

Q ss_pred             CccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEE
Q 039161           30 HLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIID  109 (333)
Q Consensus        30 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~  109 (333)
                      .-+.++.+++.++ .+|..+.  ++|++|+|++|.+++..+..|..+++|++|++++|++...++..+  ..+++|++|+
T Consensus        20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~--~~l~~L~~L~   94 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVF--DSLTQLTVLD   94 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEE
T ss_pred             eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhc--ccCCCcCEEE
Confidence            3456777777776 4554433  677777777777777667777777778888888777776665555  5667777777


Q ss_pred             cCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhhhC
Q 039161          110 LSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGN  189 (333)
Q Consensus       110 ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~  189 (333)
                      +++|.+++. +...+..                                       +++|++|++++|+++ .+|..+..
T Consensus        95 Ls~N~l~~l-~~~~~~~---------------------------------------l~~L~~L~Ls~N~l~-~lp~~~~~  133 (229)
T 3e6j_A           95 LGTNQLTVL-PSAVFDR---------------------------------------LVHLKELFMCCNKLT-ELPRGIER  133 (229)
T ss_dssp             CCSSCCCCC-CTTTTTT---------------------------------------CTTCCEEECCSSCCC-SCCTTGGG
T ss_pred             CCCCcCCcc-ChhHhCc---------------------------------------chhhCeEeccCCccc-ccCccccc
Confidence            777766632 2111111                                       344455555555555 44444555


Q ss_pred             CCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCC
Q 039161          190 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD  228 (333)
Q Consensus       190 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  228 (333)
                      +++|++|+|++|++++..+..+..+++|+.|++++|.+.
T Consensus       134 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          134 LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            555555555555555444444555555555555555554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.84  E-value=5.7e-20  Score=150.17  Aligned_cols=154  Identities=19%  Similarity=0.290  Sum_probs=134.0

Q ss_pred             CcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhc
Q 039161           55 LEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVD  134 (333)
Q Consensus        55 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~  134 (333)
                      -+.++++++.++ .+|..+.  +++++|++++|++++..+..+  ..+++|++|++++|.+++..|.. +..        
T Consensus        13 ~~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~--~~l~~L~~L~Ls~N~i~~~~~~~-~~~--------   78 (220)
T 2v9t_B           13 NNIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAF--SPYKKLRRIDLSNNQISELAPDA-FQG--------   78 (220)
T ss_dssp             TTEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSS--TTCTTCCEEECCSSCCCEECTTT-TTT--------
T ss_pred             CCEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHh--hCCCCCCEEECCCCcCCCcCHHH-hhC--------
Confidence            368899999998 4666554  789999999999998887776  78899999999999998655543 221        


Q ss_pred             ccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccC
Q 039161          135 EQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENM  214 (333)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  214 (333)
                                                     +++|++|++++|.++...+..|..+++|++|+|++|.+++..+..|..+
T Consensus        79 -------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l  127 (220)
T 2v9t_B           79 -------------------------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL  127 (220)
T ss_dssp             -------------------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             -------------------------------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCC
Confidence                                           6789999999999997777778999999999999999999889999999


Q ss_pred             CCCcEEeCCCCcCCCCCCCCccccCccceeecccCccee
Q 039161          215 TALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG  253 (333)
Q Consensus       215 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~  253 (333)
                      ++|+.|+|++|.+++..+..+..+++|+.|++++|++.+
T Consensus       128 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          128 HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            999999999999998888889999999999999999984

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.84  E-value=1.6e-22  Score=183.86  Aligned_cols=248  Identities=19%  Similarity=0.127  Sum_probs=133.2

Q ss_pred             CCcCcccEEECcCCccccccchhhhC-----CCCccEEECCCCcCcCCC----ChhhcCCCCCcEEEccCCcCCCccccc
Q 039161            2 SFSTELITLHLENNSLEGHIHNTFAN-----ASHLRSLDLYSNKLEGPL----PRSLAKYIKLEVVNVENNMISDSFPCW   72 (333)
Q Consensus         2 ~l~~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~~~~~~   72 (333)
                      .++ +|++|++++|.+++..+..+..     .++|++|++++|.+++..    +..+..+++|++|++++|.+++..+..
T Consensus       111 ~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~  189 (461)
T 1z7x_W          111 TLP-TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRV  189 (461)
T ss_dssp             SCT-TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred             cCC-ceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHH
Confidence            345 7888888888876554444332     456888888888777533    455566777888888887776543333


Q ss_pred             cc-----CCCCCCEEEcccCcCCCCC----CCCCCcccCCcccEEEcCCCcccccCC----cccccChHHhhhhcccCcc
Q 039161           73 MG-----SLSELKILVLRSNQFDCPP----CNSNITFPFQALRIIDLSHTEFTGFLP----RRIFPSMEAMKNVDEQGRL  139 (333)
Q Consensus        73 ~~-----~l~~L~~L~L~~n~l~~~~----~~~~~~~~l~~L~~L~ls~n~l~~~~~----~~~~~~l~~L~~l~~~~~~  139 (333)
                      +.     ..++|++|++++|.++...    +..+  ..+++|++|++++|.+++...    ..++..++.|+.+++.++.
T Consensus       190 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~  267 (461)
T 1z7x_W          190 LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV--ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG  267 (461)
T ss_dssp             HHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH--HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH--HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence            32     2557777777777766532    1111  345677777777776654311    1222234556666665542


Q ss_pred             ccc------cccc--ccCceEEeec--Ccch----hhhh----hhhccceEEccCcccCcc----chhhhhCCCCCCEEE
Q 039161          140 EYM------GRAF--CDESITVAMK--GHDF----QLQN----IFVMFRAMDFSSNRFHGE----ISEVLGNFKSLKVLN  197 (333)
Q Consensus       140 ~~~------~~~~--~~~~~~~~~~--~~~~----~~~~----~~~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~  197 (333)
                      ..-      ....  ..........  ....    .+..    ..+.|+.|++++|.+++.    ++..+..+++|++|+
T Consensus       268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~  347 (461)
T 1z7x_W          268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ  347 (461)
T ss_dssp             CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEE
T ss_pred             CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEE
Confidence            110      0000  0000000000  0000    0111    113666666666666543    344455556666666


Q ss_pred             ccCCcCCCCCcccccc-----CCCCcEEeCCCCcCCC----CCCCCccccCccceeecccCcce
Q 039161          198 LSHNSLTGNIPVSFEN-----MTALESLDLSFNKLDG----RIPEQLLSVTALALLNLSYNRLW  252 (333)
Q Consensus       198 Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~l~~N~l~  252 (333)
                      +++|.+++..+..+..     .++|++|++++|.+++    .++..+..+++|+.|++++|+++
T Consensus       348 Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          348 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             ccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence            6666665443333322     4566666666666664    44555555666666666666664

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.83  E-value=4.9e-20  Score=150.54  Aligned_cols=115  Identities=18%  Similarity=0.322  Sum_probs=101.3

Q ss_pred             hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161          166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN  245 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  245 (333)
                      +++|+.|++++|++++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..+..+++|+.|+
T Consensus        56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  135 (220)
T 2v70_A           56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS  135 (220)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred             CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence            56788888888888877777899999999999999999988888999999999999999999988899999999999999


Q ss_pred             cccCcceecCCCCCccCCccccccccccCCCCCCCCCCCC
Q 039161          246 LSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCS  285 (333)
Q Consensus       246 l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C~  285 (333)
                      +++|.+++..|.     .|........+.+.+||+.|+|.
T Consensus       136 L~~N~l~~~~~~-----~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          136 LYDNQITTVAPG-----AFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CTTSCCCCBCTT-----TTTTCTTCCEEECCSCCEECSGG
T ss_pred             CCCCcCCEECHH-----HhcCCCCCCEEEecCcCCcCCCc
Confidence            999999876665     34444555677899999999996

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.83  E-value=5.9e-20  Score=171.09  Aligned_cols=171  Identities=18%  Similarity=0.245  Sum_probs=145.1

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      +|+.|++++|.+... + .|..+++|+.|+|++|.+++..+  +..+++|+.|+|++|.+++ ++ .+..+++|++|+|+
T Consensus        44 ~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls  117 (605)
T 1m9s_A           44 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLE  117 (605)
T ss_dssp             TCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECT
T ss_pred             CCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEec
Confidence            799999999999855 3 58899999999999999996544  8999999999999999985 33 78899999999999


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI  165 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (333)
                      +|.+.+..  .+  ..+++|+.|++++|.+++. + . +..                                       
T Consensus       118 ~N~l~~l~--~l--~~l~~L~~L~Ls~N~l~~l-~-~-l~~---------------------------------------  151 (605)
T 1m9s_A          118 HNGISDIN--GL--VHLPQLESLYLGNNKITDI-T-V-LSR---------------------------------------  151 (605)
T ss_dssp             TSCCCCCG--GG--GGCTTCSEEECCSSCCCCC-G-G-GGS---------------------------------------
T ss_pred             CCCCCCCc--cc--cCCCccCEEECCCCccCCc-h-h-hcc---------------------------------------
Confidence            99998763  23  7789999999999998853 1 1 111                                       


Q ss_pred             hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCC
Q 039161          166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP  232 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  232 (333)
                      +++|+.|+|++|.+++..|  +..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.+...
T Consensus       152 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          152 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred             cCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence            6789999999999997666  88999999999999999964  468889999999999999986433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.83  E-value=5.5e-20  Score=154.41  Aligned_cols=79  Identities=19%  Similarity=0.283  Sum_probs=46.4

Q ss_pred             ccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecc
Q 039161          168 MFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLS  247 (333)
Q Consensus       168 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~  247 (333)
                      .|+.|++++|++++ ++ .+..+++|+.|++++|++++. + .+..+++|+.|++++|.+++.  ..+..+++|+.|+++
T Consensus       107 ~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~  180 (263)
T 1xeu_A          107 CLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLT  180 (263)
T ss_dssp             SCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEE
T ss_pred             cccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCC
Confidence            34445555555543 22 355566666666666666643 2 455666666666666666644  445666666667777


Q ss_pred             cCcce
Q 039161          248 YNRLW  252 (333)
Q Consensus       248 ~N~l~  252 (333)
                      +|+++
T Consensus       181 ~N~~~  185 (263)
T 1xeu_A          181 GQKCV  185 (263)
T ss_dssp             EEEEE
T ss_pred             CCccc
Confidence            76665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.82  E-value=2.4e-19  Score=147.36  Aligned_cols=157  Identities=22%  Similarity=0.226  Sum_probs=134.7

Q ss_pred             CCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhh
Q 039161           54 KLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNV  133 (333)
Q Consensus        54 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l  133 (333)
                      ..+.++.+++.++ .+|..+.  ++|++|++++|.+++..+..+  ..+++|++|++++|.++ .++...+..       
T Consensus        20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~L~~N~l~-~i~~~~~~~-------   86 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVF--DSLINLKELYLGSNQLG-ALPVGVFDS-------   86 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTTTT-------
T ss_pred             eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHh--hCccCCcEEECCCCCCC-CcChhhccc-------
Confidence            4678999999988 5665543  899999999999999988777  78999999999999997 444332322       


Q ss_pred             cccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCcccccc
Q 039161          134 DEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFEN  213 (333)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  213 (333)
                                                      +++|+.|++++|++++..+..|..+++|++|++++|+++ .+|..+..
T Consensus        87 --------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  133 (229)
T 3e6j_A           87 --------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIER  133 (229)
T ss_dssp             --------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGG
T ss_pred             --------------------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCccccc
Confidence                                            678899999999999777888899999999999999999 77888899


Q ss_pred             CCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCC
Q 039161          214 MTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIP  256 (333)
Q Consensus       214 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p  256 (333)
                      +++|+.|+|++|.+++..+..+..+++|+.|++++|++.+..+
T Consensus       134 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          134 LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            9999999999999997777789999999999999999986554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=9.2e-20  Score=168.15  Aligned_cols=169  Identities=24%  Similarity=0.330  Sum_probs=139.5

Q ss_pred             cCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEE
Q 039161            4 STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILV   83 (333)
Q Consensus         4 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   83 (333)
                      +++|++|+|++|.|+ .+|   ..+++|++|++++|++++ +|. +.+  +|++|++++|.+++ +|.   .+++|++|+
T Consensus        79 ~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~  146 (571)
T 3cvr_A           79 PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYIN  146 (571)
T ss_dssp             CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred             cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEe
Confidence            347999999999999 455   457999999999999996 676 665  99999999999996 565   689999999


Q ss_pred             cccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhh
Q 039161           84 LRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQ  163 (333)
Q Consensus        84 L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (333)
                      +++|.+++++.      .+++|++|++++|.+++ +|. +                                        
T Consensus       147 Ls~N~l~~lp~------~l~~L~~L~Ls~N~L~~-lp~-l----------------------------------------  178 (571)
T 3cvr_A          147 ADNNQLTMLPE------LPTSLEVLSVRNNQLTF-LPE-L----------------------------------------  178 (571)
T ss_dssp             CCSSCCSCCCC------CCTTCCEEECCSSCCSC-CCC-C----------------------------------------
T ss_pred             CCCCccCcCCC------cCCCcCEEECCCCCCCC-cch-h----------------------------------------
Confidence            99999998653      46899999999999985 553 2                                        


Q ss_pred             hhhhccceEEccCcccCccchhhhhCCCCC-------CEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCcc
Q 039161          164 NIFVMFRAMDFSSNRFHGEISEVLGNFKSL-------KVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLL  236 (333)
Q Consensus       164 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L-------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  236 (333)
                        .++|+.|++++|+++ .+|. +..  +|       +.|+|++|.++ .+|..+..+++|+.|+|++|.+++.+|..+.
T Consensus       179 --~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~  251 (571)
T 3cvr_A          179 --PESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS  251 (571)
T ss_dssp             --CTTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred             --hCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence              256888999999998 5665 544  67       99999999999 5777777899999999999999988887766


Q ss_pred             ccC
Q 039161          237 SVT  239 (333)
Q Consensus       237 ~l~  239 (333)
                      .+.
T Consensus       252 ~l~  254 (571)
T 3cvr_A          252 QQT  254 (571)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.80  E-value=2.8e-19  Score=143.57  Aligned_cols=153  Identities=14%  Similarity=0.180  Sum_probs=104.9

Q ss_pred             cCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHH
Q 039161           50 AKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEA  129 (333)
Q Consensus        50 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~  129 (333)
                      ..+++|++|++++|.++ .+| .+..+++|++|++++|.++...  .+  ..+++|++|++++|.+++..+..+ ..   
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~--~l--~~l~~L~~L~l~~n~l~~~~~~~l-~~---  110 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYN--PI--SGLSNLERLRIMGKDVTSDKIPNL-SG---  110 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCG--GG--TTCTTCCEEEEECTTCBGGGSCCC-TT---
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcch--hh--hcCCCCCEEEeECCccCcccChhh-cC---
Confidence            44556666777766666 334 4666667777777766554332  22  456677777777777665433321 11   


Q ss_pred             hhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCc-CCCCCc
Q 039161          130 MKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNS-LTGNIP  208 (333)
Q Consensus       130 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~  208 (333)
                                                          +++|++|++++|++++..+..+..+++|++|++++|. ++ .++
T Consensus       111 ------------------------------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~  153 (197)
T 4ezg_A          111 ------------------------------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM  153 (197)
T ss_dssp             ------------------------------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG
T ss_pred             ------------------------------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH
Confidence                                                5677788888888877777788888889999999887 55 444


Q ss_pred             cccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcce
Q 039161          209 VSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLW  252 (333)
Q Consensus       209 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~  252 (333)
                       .+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|++.
T Consensus       154 -~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          154 -PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             -GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred             -hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence             67888889999999998885 33 6778888999999999885

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.80  E-value=5e-19  Score=142.09  Aligned_cols=154  Identities=18%  Similarity=0.243  Sum_probs=126.2

Q ss_pred             hCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcc
Q 039161           26 ANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQAL  105 (333)
Q Consensus        26 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L  105 (333)
                      +.+++|++|++++|.++ .+| .+..+++|++|++++|.++.  +..+..+++|++|++++|.+++..+..+  ..+++|
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L  114 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNL--SGLTSL  114 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCC--TTCTTC
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhh--cCCCCC
Confidence            56789999999999998 566 68999999999999998763  3478899999999999999987666665  779999


Q ss_pred             cEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcc-cCccch
Q 039161          106 RIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNR-FHGEIS  184 (333)
Q Consensus       106 ~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~  184 (333)
                      ++|++++|.+++..+..+ .                                       .+++|++|++++|. ++ .+|
T Consensus       115 ~~L~Ls~n~i~~~~~~~l-~---------------------------------------~l~~L~~L~L~~n~~i~-~~~  153 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKI-N---------------------------------------TLPKVNSIDLSYNGAIT-DIM  153 (197)
T ss_dssp             CEEECCSSBCBGGGHHHH-T---------------------------------------TCSSCCEEECCSCTBCC-CCG
T ss_pred             CEEEecCCccCcHhHHHH-h---------------------------------------hCCCCCEEEccCCCCcc-ccH
Confidence            999999999986444321 1                                       16789999999998 66 555


Q ss_pred             hhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCC
Q 039161          185 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDG  229 (333)
Q Consensus       185 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  229 (333)
                       .+..+++|+.|++++|.+++. + .+..+++|++|++++|.+.+
T Consensus       154 -~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          154 -PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             -GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred             -hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence             588999999999999999964 3 78889999999999999864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.78  E-value=3.6e-21  Score=178.18  Aligned_cols=88  Identities=30%  Similarity=0.431  Sum_probs=66.1

Q ss_pred             hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCC-CCCccccCcccee
Q 039161          166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRI-PEQLLSVTALALL  244 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L  244 (333)
                      +++|+.|++++|.++ .+|..++.+++|+.|+|++|.+++ +| .++.+++|+.|+|++|.+++.. |..+..+++|+.|
T Consensus       462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L  538 (567)
T 1dce_A          462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL  538 (567)
T ss_dssp             GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred             cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence            566777777777777 667777777888888888888775 45 6777778888888888877665 7777777788888


Q ss_pred             ecccCcceecCC
Q 039161          245 NLSYNRLWGRIP  256 (333)
Q Consensus       245 ~l~~N~l~~~~p  256 (333)
                      ++++|++++..|
T Consensus       539 ~L~~N~l~~~~~  550 (567)
T 1dce_A          539 NLQGNSLCQEEG  550 (567)
T ss_dssp             ECTTSGGGGSSS
T ss_pred             EecCCcCCCCcc
Confidence            888888775544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.78  E-value=8.3e-19  Score=140.15  Aligned_cols=91  Identities=18%  Similarity=0.254  Sum_probs=62.2

Q ss_pred             hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161          166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN  245 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  245 (333)
                      +++|++|++++|++++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|.+++..|..+..+++|+.|+
T Consensus        53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (192)
T 1w8a_A           53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN  132 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred             CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence            45556666666666655566666777777777777777766666677777777777777777766666777777777777


Q ss_pred             cccCcceecCC
Q 039161          246 LSYNRLWGRIP  256 (333)
Q Consensus       246 l~~N~l~~~~p  256 (333)
                      +++|++++..+
T Consensus       133 L~~N~l~c~c~  143 (192)
T 1w8a_A          133 LASNPFNCNCH  143 (192)
T ss_dssp             CTTCCBCCSGG
T ss_pred             eCCCCccCcCc
Confidence            77777765443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.75  E-value=4.2e-19  Score=169.24  Aligned_cols=90  Identities=18%  Similarity=0.200  Sum_probs=42.4

Q ss_pred             chhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCccc
Q 039161           22 HNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFP  101 (333)
Q Consensus        22 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  101 (333)
                      +..|..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|+++.+ |..+  ..
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l-p~~~--~~  291 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSL-PAEL--GS  291 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSC-CSSG--GG
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCcc-Chhh--cC
Confidence            344445555555555555554 34444445555555555555555 4444455555555555555555532 2222  44


Q ss_pred             CCcccEEEcCCCccc
Q 039161          102 FQALRIIDLSHTEFT  116 (333)
Q Consensus       102 l~~L~~L~ls~n~l~  116 (333)
                      +++|++|+|++|.++
T Consensus       292 l~~L~~L~L~~N~l~  306 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT  306 (727)
T ss_dssp             GTTCSEEECCSSCCC
T ss_pred             CCCCCEEECCCCCCC
Confidence            555555555555544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=1.1e-17  Score=140.40  Aligned_cols=168  Identities=17%  Similarity=0.273  Sum_probs=141.9

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      +++.++++++.+++..  .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+  +..+++|++|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            4677888999998554  57889999999999999984 55 68899999999999999996544  8999999999999


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI  165 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (333)
                      +|++++.+...    . ++|++|++++|.+++. +.  +..                                       
T Consensus        94 ~N~l~~l~~~~----~-~~L~~L~L~~N~l~~~-~~--l~~---------------------------------------  126 (263)
T 1xeu_A           94 RNRLKNLNGIP----S-ACLSRLFLDNNELRDT-DS--LIH---------------------------------------  126 (263)
T ss_dssp             SSCCSCCTTCC----C-SSCCEEECCSSCCSBS-GG--GTT---------------------------------------
T ss_pred             CCccCCcCccc----c-CcccEEEccCCccCCC-hh--hcC---------------------------------------
Confidence            99999876432    2 8999999999998852 21  111                                       


Q ss_pred             hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCC
Q 039161          166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGR  230 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  230 (333)
                      +++|+.|++++|++++. + .+..+++|+.|++++|++++.  ..+..+++|+.|++++|.+...
T Consensus       127 l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          127 LKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             cccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            67899999999999854 4 588999999999999999976  6788999999999999999854

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.74  E-value=6.3e-18  Score=146.68  Aligned_cols=90  Identities=16%  Similarity=0.122  Sum_probs=80.3

Q ss_pred             hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCc-EEeCCCCcCCCCCCCCccccCcccee
Q 039161          166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALE-SLDLSFNKLDGRIPEQLLSVTALALL  244 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L  244 (333)
                      +++|+.+++++|+++...+.+|..+++|+.+++.+| +..+.+.+|.++.+|+ .+++.+ .++.+.+..|.++++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            689999999999999777788999999999999998 8778888999999999 999999 7776778899999999999


Q ss_pred             ecccCcceecCCCC
Q 039161          245 NLSYNRLWGRIPRG  258 (333)
Q Consensus       245 ~l~~N~l~~~~p~~  258 (333)
                      ++++|.++ .++..
T Consensus       303 ~l~~n~i~-~I~~~  315 (329)
T 3sb4_A          303 LATGDKIT-TLGDE  315 (329)
T ss_dssp             EECSSCCC-EECTT
T ss_pred             EeCCCccC-ccchh
Confidence            99999997 44443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.74  E-value=1.2e-20  Score=174.74  Aligned_cols=193  Identities=16%  Similarity=0.156  Sum_probs=140.2

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCc-------------CcCCCChhhcCCCCCcEEE-ccCCcCCCcccc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNK-------------LEGPLPRSLAKYIKLEVVN-VENNMISDSFPC   71 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-------------l~~~~p~~~~~l~~L~~L~-L~~n~l~~~~~~   71 (333)
                      +|+.|+|++|.++ .+|..++.+++|+.|++++|.             ..+..|..+..+++|+.|+ ++.|.+......
T Consensus       350 ~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l  428 (567)
T 1dce_A          350 QLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK  428 (567)
T ss_dssp             TSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             cceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence            6778888888887 667778888888888887664             4556667777777777777 454433211000


Q ss_pred             -----ccc--CCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccccccc
Q 039161           72 -----WMG--SLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGR  144 (333)
Q Consensus        72 -----~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~  144 (333)
                           .+.  ....|+.|++++|.+++.+.  +  ..+++|+.|++++|.++ .+|..+ ..                  
T Consensus       429 ~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~--~--~~l~~L~~L~Ls~N~l~-~lp~~~-~~------------------  484 (567)
T 1dce_A          429 FLLENSVLKMEYADVRVLHLAHKDLTVLCH--L--EQLLLVTHLDLSHNRLR-ALPPAL-AA------------------  484 (567)
T ss_dssp             HHHHHHHHHHHHTTCSEEECTTSCCSSCCC--G--GGGTTCCEEECCSSCCC-CCCGGG-GG------------------
T ss_pred             hhhcccccccCccCceEEEecCCCCCCCcC--c--cccccCcEeecCccccc-ccchhh-hc------------------
Confidence                 000  01358888888888887642  3  77888888888888888 666432 11                  


Q ss_pred             ccccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCC-ccccccCCCCcEEeCC
Q 039161          145 AFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNI-PVSFENMTALESLDLS  223 (333)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls  223 (333)
                                           +++|+.|++++|.+++ +| .+..+++|+.|+|++|++++.. |..++.+++|+.|+|+
T Consensus       485 ---------------------l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~  541 (567)
T 1dce_A          485 ---------------------LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ  541 (567)
T ss_dssp             ---------------------CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred             ---------------------CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEec
Confidence                                 6788899999999985 66 7888999999999999999776 8889999999999999


Q ss_pred             CCcCCCCCCCC---ccccCccceeec
Q 039161          224 FNKLDGRIPEQ---LLSVTALALLNL  246 (333)
Q Consensus       224 ~n~l~~~~~~~---~~~l~~L~~L~l  246 (333)
                      +|.+++..|..   +..+++|+.|++
T Consensus       542 ~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          542 GNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             TSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCcCCCCccHHHHHHHHCcccCccCC
Confidence            99998655432   234777887764

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.73  E-value=2.4e-17  Score=131.60  Aligned_cols=113  Identities=29%  Similarity=0.468  Sum_probs=77.6

Q ss_pred             hccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeec
Q 039161          167 VMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL  246 (333)
Q Consensus       167 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l  246 (333)
                      +.+++|++++|.++ .+|..|..+++|+.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|+.|++
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            45677777777776 55667777777777777777777666677777777777777777777666667777777777777


Q ss_pred             ccCcceecCCCCCccCCccccccccccCCCCCCCCCCCC
Q 039161          247 SYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCS  285 (333)
Q Consensus       247 ~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C~  285 (333)
                      ++|.++ .+|..    .|........+.+.+||+.|+|.
T Consensus       110 ~~N~l~-~~~~~----~~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A          110 HGNDIS-VVPEG----AFNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             CSSCCC-BCCTT----TTTTCTTCCEEECCSSCEECSGG
T ss_pred             CCCCCC-eeChh----hhhcCccccEEEeCCCCeecCCc
Confidence            777776 33332    23333444555677777777774

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.73  E-value=8.6e-18  Score=131.31  Aligned_cols=86  Identities=21%  Similarity=0.197  Sum_probs=65.8

Q ss_pred             CCCccEEECCCCcCc-CCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCccc
Q 039161           28 ASHLRSLDLYSNKLE-GPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALR  106 (333)
Q Consensus        28 l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~  106 (333)
                      .++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+  ..+++|+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~   98 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA--EKLPNLT   98 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH--HHCTTCC
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH--hhCCCCC
Confidence            467888888888887 66777778888888888888888754  677788888888888888877544433  4577888


Q ss_pred             EEEcCCCcccc
Q 039161          107 IIDLSHTEFTG  117 (333)
Q Consensus       107 ~L~ls~n~l~~  117 (333)
                      +|++++|.+++
T Consensus        99 ~L~Ls~N~l~~  109 (168)
T 2ell_A           99 HLNLSGNKLKD  109 (168)
T ss_dssp             EEECBSSSCCS
T ss_pred             EEeccCCccCc
Confidence            88888887763

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=4.4e-17  Score=130.10  Aligned_cols=131  Identities=22%  Similarity=0.312  Sum_probs=84.1

Q ss_pred             cEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccc-cccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEc
Q 039161           32 RSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPC-WMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDL  110 (333)
Q Consensus        32 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l  110 (333)
                      +++++++|.++ .+|..+..  ++++|++++|.+++..+. .|..+++|++|++++|.+++..+..+  ..+++|     
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L-----   80 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF--EGASHI-----   80 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT--TTCTTC-----
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc--CCcccC-----
Confidence            56777777775 45544432  666777777766654443 35566666666666666665554444  344444     


Q ss_pred             CCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhhhCC
Q 039161          111 SHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNF  190 (333)
Q Consensus       111 s~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l  190 (333)
                                                                                 ++|++++|++++..+..|..+
T Consensus        81 -----------------------------------------------------------~~L~Ls~N~l~~~~~~~~~~l  101 (192)
T 1w8a_A           81 -----------------------------------------------------------QELQLGENKIKEISNKMFLGL  101 (192)
T ss_dssp             -----------------------------------------------------------CEEECCSCCCCEECSSSSTTC
T ss_pred             -----------------------------------------------------------CEEECCCCcCCccCHHHhcCC
Confidence                                                                       445555555554555556677


Q ss_pred             CCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCC
Q 039161          191 KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRI  231 (333)
Q Consensus       191 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  231 (333)
                      ++|++|+|++|++++..|..+..+++|++|+|++|.+.+..
T Consensus       102 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A          102 HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            77888888888888777777888888888888888887543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=1e-17  Score=145.38  Aligned_cols=106  Identities=16%  Similarity=0.124  Sum_probs=72.2

Q ss_pred             hhccceEEccCcccCccchhhh-hCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccc-e
Q 039161          166 FVMFRAMDFSSNRFHGEISEVL-GNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALA-L  243 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~  243 (333)
                      +.++..+.+.++-.. .....+ ..+++|+.++|++|+++.+.+.+|.++.+|+.+++.+| ++.+.+..|.++.+|+ .
T Consensus       201 ~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~  278 (329)
T 3sb4_A          201 PRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT  278 (329)
T ss_dssp             GGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred             ccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEE
Confidence            455666666654222 222222 24789999999999998777788999999999999998 7767777899999998 9


Q ss_pred             eecccCcceecCCCCCccCCccccccccccCCCCCC
Q 039161          244 LNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEP  279 (333)
Q Consensus       244 L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~  279 (333)
                      +++.+ .++ .|+..    .|........+.+.++.
T Consensus       279 l~l~~-~l~-~I~~~----aF~~c~~L~~l~l~~n~  308 (329)
T 3sb4_A          279 LELPA-SVT-AIEFG----AFMGCDNLRYVLATGDK  308 (329)
T ss_dssp             EEECT-TCC-EECTT----TTTTCTTEEEEEECSSC
T ss_pred             EEEcc-cce-EEchh----hhhCCccCCEEEeCCCc
Confidence            99988 565 44443    44444434444444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.71  E-value=5.7e-17  Score=126.60  Aligned_cols=61  Identities=13%  Similarity=0.148  Sum_probs=38.3

Q ss_pred             CCCcEEEccCCcCC-CcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccc
Q 039161           53 IKLEVVNVENNMIS-DSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTG  117 (333)
Q Consensus        53 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~  117 (333)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+  ..+++|++|++++|.+++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~--~~l~~L~~L~Ls~N~l~~   85 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNL--PKLPKLKKLELSENRIFG   85 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSC--CCCSSCCEEEEESCCCCS
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhh--ccCCCCCEEECcCCcCch
Confidence            56777777777776 45666666677777777777776655  222  445555555555555553

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.71  E-value=4.3e-18  Score=162.31  Aligned_cols=144  Identities=19%  Similarity=0.165  Sum_probs=79.7

Q ss_pred             CCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCccc
Q 039161           44 PLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRI  123 (333)
Q Consensus        44 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~  123 (333)
                      ..+..|..+..|+.|+|++|.+. .+|..+..+++|++|+|++|.++.+ +..+  ..+++|++|+|++|.++ .+|..+
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~l-p~~~--~~l~~L~~L~Ls~N~l~-~lp~~~  289 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTEL-PAEI--KNLSNLRVLDLSHNRLT-SLPAEL  289 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCC-CGGG--GGGTTCCEEECTTSCCS-SCCSSG
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCccc-Chhh--hCCCCCCEEeCcCCcCC-ccChhh
Confidence            34555666666666666666666 4454555666666666666666633 2333  55666666666666666 444432


Q ss_pred             ccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcC
Q 039161          124 FPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSL  203 (333)
Q Consensus       124 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  203 (333)
                       ..                                       +++|++|+|++|.++ .+|..|..+++|+.|+|++|.+
T Consensus       290 -~~---------------------------------------l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          290 -GS---------------------------------------CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             -GG---------------------------------------GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCC
T ss_pred             -cC---------------------------------------CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCcc
Confidence             11                                       455666666666665 5555566666666666666666


Q ss_pred             CCCCccccccCCC-CcEEeCCCCcCCCCCCC
Q 039161          204 TGNIPVSFENMTA-LESLDLSFNKLDGRIPE  233 (333)
Q Consensus       204 ~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~  233 (333)
                      ++.+|..+..+.. +..++|++|.+++.+|.
T Consensus       329 ~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          329 EKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             CCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence            6666655543321 12355666666655554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.70  E-value=1.8e-16  Score=126.60  Aligned_cols=108  Identities=19%  Similarity=0.283  Sum_probs=52.1

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      ++++|++++|.++ .+|..|.++++|++|+|++|.+++..+.+|.++++|++|+|++|.+++..+..|..+++|++|+|+
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            4455555555544 233444445555555555555544444444455555555555555544444444445555555555


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCccc
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFT  116 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~  116 (333)
                      +|.++..++..+  ..+++|+.|++++|.+.
T Consensus       111 ~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          111 GNDISVVPEGAF--NDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SSCCCBCCTTTT--TTCTTCCEEECCSSCEE
T ss_pred             CCCCCeeChhhh--hcCccccEEEeCCCCee
Confidence            555544444333  34445555555555444

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.69  E-value=2.1e-16  Score=124.45  Aligned_cols=113  Identities=23%  Similarity=0.274  Sum_probs=82.3

Q ss_pred             cCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEE
Q 039161            4 STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILV   83 (333)
Q Consensus         4 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   83 (333)
                      ++++++|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            34677777777777766666777777777777777777766666667777777777777777766666667777777777


Q ss_pred             cccCcCCCCCCCCCCcccCCcccEEEcCCCccccc
Q 039161           84 LRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGF  118 (333)
Q Consensus        84 L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~  118 (333)
                      +++|.+++.++..+  ..+++|++|++++|.+.+.
T Consensus       107 l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A          107 LDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCC
T ss_pred             CcCCcceEeCHHHh--cCCcccCEEEecCCCeecc
Confidence            77777776665544  5677777777777777654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.68  E-value=1.2e-16  Score=122.07  Aligned_cols=57  Identities=23%  Similarity=0.234  Sum_probs=28.9

Q ss_pred             hccceEEccCcccCcc-chhhhhCCCCCCEEEccCCcCCCCCc---cccccCCCCcEEeCC
Q 039161          167 VMFRAMDFSSNRFHGE-ISEVLGNFKSLKVLNLSHNSLTGNIP---VSFENMTALESLDLS  223 (333)
Q Consensus       167 ~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls  223 (333)
                      ++|++|++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.||++
T Consensus        88 ~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           88 PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            4445555555555432 12445555555555555555554433   345555555555554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.68  E-value=2.8e-17  Score=125.71  Aligned_cols=112  Identities=20%  Similarity=0.233  Sum_probs=98.6

Q ss_pred             cCcccEEECcCCccc-cccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161            4 STELITLHLENNSLE-GHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL   82 (333)
Q Consensus         4 ~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   82 (333)
                      +++++.|++++|.++ +..|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            458999999999998 78888889999999999999999965  778999999999999999998788888889999999


Q ss_pred             EcccCcCCCCC-CCCCCcccCCcccEEEcCCCcccccC
Q 039161           83 VLRSNQFDCPP-CNSNITFPFQALRIIDLSHTEFTGFL  119 (333)
Q Consensus        83 ~L~~n~l~~~~-~~~~~~~~l~~L~~L~ls~n~l~~~~  119 (333)
                      ++++|.+++.+ +..+  ..+++|++|++++|.+++..
T Consensus        94 ~ls~N~i~~~~~~~~~--~~l~~L~~L~l~~N~l~~~~  129 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPL--KKLENLKSLDLFNCEVTNLN  129 (149)
T ss_dssp             ECTTSCCCSHHHHGGG--GGCTTCCEEECTTCGGGGST
T ss_pred             ECCCCcCCChHHHHHH--hhCCCCCEEeCcCCcccchH
Confidence            99999998753 2333  77899999999999998543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.67  E-value=9.2e-18  Score=157.20  Aligned_cols=245  Identities=13%  Similarity=0.045  Sum_probs=123.4

Q ss_pred             cccEEECcCCccccc----cchhhhCCCCccEEECCCCcCcC----CCChhhcCCCCCcEEEccCCcCCCcccccccCCC
Q 039161            6 ELITLHLENNSLEGH----IHNTFANASHLRSLDLYSNKLEG----PLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLS   77 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~   77 (333)
                      +|++|+|++|.+++.    ++..+.++++|++|++++|.+++    .++..+.++++|++|++++|.+.+ ++..+..++
T Consensus       165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~  243 (592)
T 3ogk_B          165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAA  243 (592)
T ss_dssp             TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCT
T ss_pred             CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhh
Confidence            667777777766544    33344556677777777766652    233334556777777777766653 444555555


Q ss_pred             CCCEEEcccCcCC--------------------------CCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhh
Q 039161           78 ELKILVLRSNQFD--------------------------CPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMK  131 (333)
Q Consensus        78 ~L~~L~L~~n~l~--------------------------~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~  131 (333)
                      +|++|+++.+...                          ...+.  ....+++|++|++++|.+++.....++..+++|+
T Consensus       244 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~  321 (592)
T 3ogk_B          244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI--LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE  321 (592)
T ss_dssp             TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG--GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred             HHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH--HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence            6666655532111                          00001  1134567888888888765443333345556666


Q ss_pred             hhcccCccccccc------ccccCceEEee-----------cCc----chhhhhhhhccceEEccCcccCccchhh----
Q 039161          132 NVDEQGRLEYMGR------AFCDESITVAM-----------KGH----DFQLQNIFVMFRAMDFSSNRFHGEISEV----  186 (333)
Q Consensus       132 ~l~~~~~~~~~~~------~~~~~~~~~~~-----------~~~----~~~~~~~~~~L~~L~ls~n~l~~~~~~~----  186 (333)
                      .+++.++......      ........+..           ...    ...+...+++|+.|+++.|.+++..+..    
T Consensus       322 ~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~  401 (592)
T 3ogk_B          322 VLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY  401 (592)
T ss_dssp             EEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHH
T ss_pred             EEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhh
Confidence            6655422110000      00011111110           000    0011122445555555444444333333    


Q ss_pred             ------------------------------hhCCCCCCEEEccCCc--CCCCCccccc-cCCCCcEEeCCCCcCCCC-CC
Q 039161          187 ------------------------------LGNFKSLKVLNLSHNS--LTGNIPVSFE-NMTALESLDLSFNKLDGR-IP  232 (333)
Q Consensus       187 ------------------------------~~~l~~L~~L~Ls~n~--l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~-~~  232 (333)
                                                    +..+++|++|++++|.  +++..+..+. .+++|+.|++++|.+++. ++
T Consensus       402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  481 (592)
T 3ogk_B          402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM  481 (592)
T ss_dssp             CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred             CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence                                          3334445555554322  3322222222 367788888888877652 34


Q ss_pred             CCccccCccceeecccCccee
Q 039161          233 EQLLSVTALALLNLSYNRLWG  253 (333)
Q Consensus       233 ~~~~~l~~L~~L~l~~N~l~~  253 (333)
                      ..+..+++|+.|++++|.+++
T Consensus       482 ~~~~~~~~L~~L~l~~n~l~~  502 (592)
T 3ogk_B          482 EFSRGCPNLQKLEMRGCCFSE  502 (592)
T ss_dssp             HHHTCCTTCCEEEEESCCCBH
T ss_pred             HHHhcCcccCeeeccCCCCcH
Confidence            445677888888888888754

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.67  E-value=7.8e-16  Score=121.18  Aligned_cols=91  Identities=22%  Similarity=0.254  Sum_probs=62.8

Q ss_pred             hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161          166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN  245 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  245 (333)
                      +++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  130 (177)
T 2o6r_A           51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW  130 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence            34555566666666655555566777777777777777766666677777777777777777755555567777778888


Q ss_pred             cccCcceecCC
Q 039161          246 LSYNRLWGRIP  256 (333)
Q Consensus       246 l~~N~l~~~~p  256 (333)
                      +++|++++..|
T Consensus       131 l~~N~~~~~~~  141 (177)
T 2o6r_A          131 LHTNPWDCSCP  141 (177)
T ss_dssp             CCSSCBCCCHH
T ss_pred             ecCCCeeccCc
Confidence            88887775544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.66  E-value=1.8e-18  Score=162.10  Aligned_cols=91  Identities=12%  Similarity=0.020  Sum_probs=69.9

Q ss_pred             hhhhhccceEEccCc--ccCccchhhhh-CCCCCCEEEccCCcCCCC-CccccccCCCCcEEeCCCCcCCCC-CCCCccc
Q 039161          163 QNIFVMFRAMDFSSN--RFHGEISEVLG-NFKSLKVLNLSHNSLTGN-IPVSFENMTALESLDLSFNKLDGR-IPEQLLS  237 (333)
Q Consensus       163 ~~~~~~L~~L~ls~n--~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~  237 (333)
                      ...+++|+.|+++++  .+++..+..+. .+++|+.|++++|.+++. ++..+.++++|+.|++++|.+++. ++.....
T Consensus       432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  511 (592)
T 3ogk_B          432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK  511 (592)
T ss_dssp             HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred             HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence            344788889998753  36655555444 489999999999999863 445567889999999999998754 3444567


Q ss_pred             cCccceeecccCccee
Q 039161          238 VTALALLNLSYNRLWG  253 (333)
Q Consensus       238 l~~L~~L~l~~N~l~~  253 (333)
                      +++|+.|++++|++++
T Consensus       512 l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          512 LPSLRYLWVQGYRASM  527 (592)
T ss_dssp             CSSCCEEEEESCBCCT
T ss_pred             cCccCeeECcCCcCCH
Confidence            8999999999999874

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.66  E-value=2.2e-15  Score=133.74  Aligned_cols=215  Identities=12%  Similarity=0.102  Sum_probs=144.3

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      .++.+.+.+ .++.+...+|.+. +|+.+++..+ ++.+...+|.++ +|+.+.+.. .++.....+|..+++|+.+++.
T Consensus       114 ~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~  188 (401)
T 4fdw_A          114 GYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS  188 (401)
T ss_dssp             SCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred             CccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence            466666654 4666777888874 7999999876 766667778774 799999885 6666667788999999999999


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI  165 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (333)
                      +|+++.+...+|  . ..+|+.+.+..+ ++ .++...|..+.+|+.+.+..+...++...+..                
T Consensus       189 ~n~l~~I~~~aF--~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~----------------  247 (401)
T 4fdw_A          189 KTKITKLPASTF--V-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE----------------  247 (401)
T ss_dssp             TSCCSEECTTTT--T-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTTCCEECTTTTTT----------------
T ss_pred             CCcceEechhhE--e-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCCccCcccccccc----------------
Confidence            988888887776  3 478999999854 55 56667788888999888887776666555533                


Q ss_pred             hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCC-----CCCccccccCCCCcEEeCCCCcCCCCCCCCccccCc
Q 039161          166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLT-----GNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA  240 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  240 (333)
                       .+|+.+++ .+.++.....+|..+++|+.+++.+|.+.     .+.+.+|.++++|+.+++.+ .++.+....|..+++
T Consensus       248 -~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~  324 (401)
T 4fdw_A          248 -SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRK  324 (401)
T ss_dssp             -CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCS
T ss_pred             -CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCC
Confidence             24555555 23344344555666666666666555443     23445555666666666653 344444555556666


Q ss_pred             cceeecccC
Q 039161          241 LALLNLSYN  249 (333)
Q Consensus       241 L~~L~l~~N  249 (333)
                      |+.+++..|
T Consensus       325 L~~l~lp~~  333 (401)
T 4fdw_A          325 VTQLTIPAN  333 (401)
T ss_dssp             CCEEEECTT
T ss_pred             ccEEEECcc
Confidence            666666443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.62  E-value=9.2e-16  Score=120.65  Aligned_cols=63  Identities=24%  Similarity=0.326  Sum_probs=31.7

Q ss_pred             hhCCCCccEEECCCCcCcCCCChhhcCCC-CCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCC
Q 039161           25 FANASHLRSLDLYSNKLEGPLPRSLAKYI-KLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDC   91 (333)
Q Consensus        25 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~   91 (333)
                      +..+.+|++|++++|+++. +|. +..+. +|++|++++|.+++.  ..+..+++|++|++++|.+++
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~   78 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR   78 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE
T ss_pred             cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc
Confidence            3445566666666666652 333 33332 566666666655532  344444455555555444443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.62  E-value=1e-15  Score=119.65  Aligned_cols=91  Identities=20%  Similarity=0.149  Sum_probs=82.9

Q ss_pred             hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161          166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN  245 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  245 (333)
                      .+.+++|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|.+++..+..+..+++|+.|+
T Consensus        29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  108 (170)
T 3g39_A           29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW  108 (170)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence            46788999999999988899999999999999999999988888899999999999999999977777899999999999


Q ss_pred             cccCcceecCC
Q 039161          246 LSYNRLWGRIP  256 (333)
Q Consensus       246 l~~N~l~~~~p  256 (333)
                      +++|++++..+
T Consensus       109 L~~N~~~c~c~  119 (170)
T 3g39_A          109 LLNNPWDCACS  119 (170)
T ss_dssp             CCSSCBCTTBG
T ss_pred             eCCCCCCCCch
Confidence            99999985544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.61  E-value=9.4e-15  Score=129.64  Aligned_cols=218  Identities=10%  Similarity=0.052  Sum_probs=175.9

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      +|+.+.+..+ ++.+...+|.+ .+|+.+++.. .++...+.+|.+|.+|+.+++..|.++.....+|. +.+|+.+.+.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp  211 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP  211 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred             CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence            5888888776 77788888988 4799999996 67767778999999999999999999866556665 6899999998


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI  165 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (333)
                      .+ ++.+...+|  ..+++|+.+++..+ ++ .++...|.+ ..|+.+.+.++...++...+..                
T Consensus       212 ~~-l~~I~~~aF--~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~----------------  269 (401)
T 4fdw_A          212 VT-LKEIGSQAF--LKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLPNGVTNIASRAFYY----------------  269 (401)
T ss_dssp             TT-CCEECTTTT--TTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEETTCCEECTTTTTT----------------
T ss_pred             Cc-hheehhhHh--hCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeCCCccEEChhHhhC----------------
Confidence            54 777777776  78899999999875 44 556666776 6788888877766666555544                


Q ss_pred             hhccceEEccCcccC-----ccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCc
Q 039161          166 FVMFRAMDFSSNRFH-----GEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA  240 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  240 (333)
                      +++|+.+++.+|.+.     ...+.+|..+++|+.+++. +.++.+...+|.++++|+.+++..+ ++.+....|..+ +
T Consensus       270 c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~  346 (401)
T 4fdw_A          270 CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-G  346 (401)
T ss_dssp             CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-C
T ss_pred             CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-C
Confidence            788999999887664     3566789999999999999 4577677889999999999999665 665777889999 9


Q ss_pred             cceeecccCcce
Q 039161          241 LALLNLSYNRLW  252 (333)
Q Consensus       241 L~~L~l~~N~l~  252 (333)
                      |+.+++.+|.+.
T Consensus       347 L~~l~l~~n~~~  358 (401)
T 4fdw_A          347 IKEVKVEGTTPP  358 (401)
T ss_dssp             CCEEEECCSSCC
T ss_pred             CCEEEEcCCCCc
Confidence            999999999876

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.60  E-value=6.4e-15  Score=115.03  Aligned_cols=108  Identities=19%  Similarity=0.234  Sum_probs=96.6

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      ..+++++++|.++. +|..+  .++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|+
T Consensus        10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            46899999999985 45444  3889999999999998889999999999999999999998777788999999999999


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCccccc
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGF  118 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~  118 (333)
                      +|++++.++..+  ..+++|++|++++|.++..
T Consensus        87 ~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           87 DNQLKSIPRGAF--DNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SSCCCCCCTTTT--TTCTTCCEEECCSSCBCTT
T ss_pred             CCccCEeCHHHh--cCCCCCCEEEeCCCCCCCC
Confidence            999999988776  7899999999999998854

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.59  E-value=3.2e-15  Score=117.52  Aligned_cols=84  Identities=17%  Similarity=0.180  Sum_probs=50.1

Q ss_pred             hccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCcc--ccccCCCCcEEeCCCCcCCCCCCCC----ccccCc
Q 039161          167 VMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPV--SFENMTALESLDLSFNKLDGRIPEQ----LLSVTA  240 (333)
Q Consensus       167 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~  240 (333)
                      +.|++|++++|.+++..+..+..+++|++|++++|.++ .+|.  .+..+++|+.|++++|.++ ..|..    +..+++
T Consensus        64 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~  141 (176)
T 1a9n_A           64 RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQ  141 (176)
T ss_dssp             SSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTT
T ss_pred             CCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCc
Confidence            44455555555555333344456666666666666665 3333  5666666777777777666 34443    666777


Q ss_pred             cceeecccCcce
Q 039161          241 LALLNLSYNRLW  252 (333)
Q Consensus       241 L~~L~l~~N~l~  252 (333)
                      |+.||+++|.+.
T Consensus       142 L~~Ld~~~n~~~  153 (176)
T 1a9n_A          142 VRVLDFQKVKLK  153 (176)
T ss_dssp             CSEETTEECCHH
T ss_pred             cceeCCCcCCHH
Confidence            777777777664

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.59  E-value=2.6e-17  Score=132.12  Aligned_cols=150  Identities=19%  Similarity=0.244  Sum_probs=91.9

Q ss_pred             hhCCCCccEEECCCCcCcCCCCh------hhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCC
Q 039161           25 FANASHLRSLDLYSNKLEGPLPR------SLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNI   98 (333)
Q Consensus        25 ~~~l~~L~~L~Ls~n~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   98 (333)
                      +.....++.++++.+.+++..|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++..+. .+ 
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~-~~-   89 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIEN-LD-   89 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSS-HH-
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccc-hh-
Confidence            45566777777777777766665      77777788888888887775 45 66777777777777777764331 11 


Q ss_pred             cccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcc
Q 039161           99 TFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNR  178 (333)
Q Consensus        99 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~  178 (333)
                       ..+++|++|++++|.+++ +| . +                                       ..+++|+.|++++|.
T Consensus        90 -~~~~~L~~L~L~~N~l~~-l~-~-~---------------------------------------~~l~~L~~L~l~~N~  126 (198)
T 1ds9_A           90 -AVADTLEELWISYNQIAS-LS-G-I---------------------------------------EKLVNLRVLYMSNNK  126 (198)
T ss_dssp             -HHHHHCSEEEEEEEECCC-HH-H-H---------------------------------------HHHHHSSEEEESEEE
T ss_pred             -hcCCcCCEEECcCCcCCc-CC-c-c---------------------------------------ccCCCCCEEECCCCc
Confidence             334566666666666553 11 0 0                                       014566666666666


Q ss_pred             cCccch-hhhhCCCCCCEEEccCCcCCCCCcc----------ccccCCCCcEEe
Q 039161          179 FHGEIS-EVLGNFKSLKVLNLSHNSLTGNIPV----------SFENMTALESLD  221 (333)
Q Consensus       179 l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~----------~~~~l~~L~~L~  221 (333)
                      +++..+ ..+..+++|++|++++|.+.+..|.          .+..+++|+.||
T Consensus       127 i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          127 ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            663222 3566666666666666666544433          145555555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.58  E-value=1.6e-14  Score=113.15  Aligned_cols=107  Identities=16%  Similarity=0.173  Sum_probs=94.7

Q ss_pred             ccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEccc
Q 039161            7 LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRS   86 (333)
Q Consensus         7 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   86 (333)
                      -+.+++++|.++ .+|..+.  ++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            478999999997 4555443  8999999999999988899999999999999999999977666788999999999999


Q ss_pred             CcCCCCCCCCCCcccCCcccEEEcCCCccccc
Q 039161           87 NQFDCPPCNSNITFPFQALRIIDLSHTEFTGF  118 (333)
Q Consensus        87 n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~  118 (333)
                      |++++.++..+  ..+++|++|++++|.+...
T Consensus        91 N~l~~l~~~~~--~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           91 NHLKSIPRGAF--DNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             SCCCCCCTTTT--TTCTTCSEEECCSSCBCTT
T ss_pred             CccceeCHHHh--ccccCCCEEEeCCCCcccc
Confidence            99999887766  7899999999999998843

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.57  E-value=1.9e-17  Score=132.91  Aligned_cols=155  Identities=19%  Similarity=0.174  Sum_probs=122.3

Q ss_pred             hcCCCCCcEEEccCCcCCCcccc------cccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcc
Q 039161           49 LAKYIKLEVVNVENNMISDSFPC------WMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRR  122 (333)
Q Consensus        49 ~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~  122 (333)
                      +.....++.++++.+.+++..|.      .+..+++|++|++++|.+++.+  .+  ..+++|++|++++|.++ .+|..
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~--~~l~~L~~L~l~~n~l~-~l~~~   88 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SL--SGMENLRILSLGRNLIK-KIENL   88 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CH--HHHTTCCEEEEEEEEEC-SCSSH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--cc--ccCCCCCEEECCCCCcc-cccch
Confidence            45566777788888888777665      8889999999999999998854  33  77899999999999887 44421


Q ss_pred             cccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCc
Q 039161          123 IFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNS  202 (333)
Q Consensus       123 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  202 (333)
                       +                                       ..+++|++|++++|++++ +| .+..+++|++|++++|.
T Consensus        89 -~---------------------------------------~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~  126 (198)
T 1ds9_A           89 -D---------------------------------------AVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNK  126 (198)
T ss_dssp             -H---------------------------------------HHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEE
T ss_pred             -h---------------------------------------hcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCc
Confidence             1                                       115789999999999985 55 58888999999999999


Q ss_pred             CCCCCc-cccccCCCCcEEeCCCCcCCCCCCCC----------ccccCccceeecccCcce
Q 039161          203 LTGNIP-VSFENMTALESLDLSFNKLDGRIPEQ----------LLSVTALALLNLSYNRLW  252 (333)
Q Consensus       203 l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~----------~~~l~~L~~L~l~~N~l~  252 (333)
                      +++..+ ..+..+++|++|++++|.+.+..|..          +..+++|+.||  +|.++
T Consensus       127 i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          127 ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            985433 47888999999999999998665543          67788888886  66664

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.56  E-value=2e-14  Score=112.66  Aligned_cols=89  Identities=20%  Similarity=0.163  Sum_probs=80.7

Q ss_pred             hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161          166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN  245 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  245 (333)
                      .+.|+.|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|.|++..+..+..+++|+.|+
T Consensus        32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  111 (174)
T 2r9u_A           32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY  111 (174)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence            46788999999999988899999999999999999999987777889999999999999999976666799999999999


Q ss_pred             cccCcceec
Q 039161          246 LSYNRLWGR  254 (333)
Q Consensus       246 l~~N~l~~~  254 (333)
                      +++|++.+.
T Consensus       112 L~~N~~~c~  120 (174)
T 2r9u_A          112 LYNNPWDCE  120 (174)
T ss_dssp             CCSSCBCTT
T ss_pred             eCCCCcccc
Confidence            999999743

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.53  E-value=1e-15  Score=143.32  Aligned_cols=66  Identities=18%  Similarity=0.152  Sum_probs=41.8

Q ss_pred             hhCCCCCCEEEccCCcCCCCCcccccc-CCCCcEEeCCCCcCCCCCCCCc-cccCccceeecccCccee
Q 039161          187 LGNFKSLKVLNLSHNSLTGNIPVSFEN-MTALESLDLSFNKLDGRIPEQL-LSVTALALLNLSYNRLWG  253 (333)
Q Consensus       187 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~l~~N~l~~  253 (333)
                      +..+++|+.|++++ .+++..+..+.. +++|+.|+|++|.+++.....+ ..+++|+.|++++|.+++
T Consensus       428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~  495 (594)
T 2p1m_B          428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD  495 (594)
T ss_dssp             HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred             HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence            44555666666654 444333333433 6778888888888765444333 567888888998888853

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.51  E-value=7e-16  Score=144.46  Aligned_cols=87  Identities=10%  Similarity=0.055  Sum_probs=50.5

Q ss_pred             hhhccceEEccCcccCccc-hhhhhCCCCCCEEEccCCcCCCC-CccccccCCCCcEEeCCC---------CcCCCCCCC
Q 039161          165 IFVMFRAMDFSSNRFHGEI-SEVLGNFKSLKVLNLSHNSLTGN-IPVSFENMTALESLDLSF---------NKLDGRIPE  233 (333)
Q Consensus       165 ~~~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~---------n~l~~~~~~  233 (333)
                      .+++|++|++++|.+++.. +..+..+++|++|++++| +... ++.....+++|++|++++         +.+++....
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~  365 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV  365 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence            4788999999998876433 333567888888888877 3321 222223467777777732         344332111


Q ss_pred             Cc-cccCccceeecccCcce
Q 039161          234 QL-LSVTALALLNLSYNRLW  252 (333)
Q Consensus       234 ~~-~~l~~L~~L~l~~N~l~  252 (333)
                      .+ ..+++|+.|++..|.++
T Consensus       366 ~l~~~~~~L~~L~~~~~~l~  385 (594)
T 2p1m_B          366 SVSMGCPKLESVLYFCRQMT  385 (594)
T ss_dssp             HHHHHCTTCCEEEEEESCCC
T ss_pred             HHHHhchhHHHHHHhcCCcC
Confidence            12 23555666666555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.45  E-value=1.3e-15  Score=133.95  Aligned_cols=64  Identities=20%  Similarity=0.257  Sum_probs=33.9

Q ss_pred             hhccceEEccCcccCcc----chhhhhCCCCCCEEEccCCcCCCCC----ccccccCCCCcEEeCCCCcCCC
Q 039161          166 FVMFRAMDFSSNRFHGE----ISEVLGNFKSLKVLNLSHNSLTGNI----PVSFENMTALESLDLSFNKLDG  229 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~  229 (333)
                      .+.|++|+|++|.+++.    ++..+...++|++|+|++|.++...    +..+...++|++|+|++|.|++
T Consensus       182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            34455666666655432    2334455556666666666665322    2233344566666666666654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.41  E-value=8.2e-13  Score=115.26  Aligned_cols=106  Identities=17%  Similarity=0.143  Sum_probs=94.2

Q ss_pred             cEEECcCC-ccccccchhhhCCCCccEEECCC-CcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            8 ITLHLENN-SLEGHIHNTFANASHLRSLDLYS-NKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         8 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      ..++.+++ +++. +|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|+|++..|..|..+++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            45789998 8985 566 99999999999996 99998888999999999999999999999888899999999999999


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCccccc
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGF  118 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~  118 (333)
                      +|++++.++..+  ..++ |+.|++.+|.+...
T Consensus        89 ~N~l~~~~~~~~--~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           89 FNALESLSWKTV--QGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             SSCCSCCCSTTT--CSCC-CCEEECCSSCCCCC
T ss_pred             CCccceeCHHHc--ccCC-ceEEEeeCCCccCC
Confidence            999999887765  4444 99999999998854

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.39  E-value=7.8e-13  Score=115.40  Aligned_cols=86  Identities=22%  Similarity=0.209  Sum_probs=63.7

Q ss_pred             hhccceEEccC-cccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCcccee
Q 039161          166 FVMFRAMDFSS-NRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL  244 (333)
Q Consensus       166 ~~~L~~L~ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  244 (333)
                      +.+|+.|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|.++++|+.|+|++|.|++..+..+..++ |+.|
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l  108 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL  108 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred             CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence            45677788875 777766667777777888888888888777777777777888888888887755555555554 7778


Q ss_pred             ecccCcce
Q 039161          245 NLSYNRLW  252 (333)
Q Consensus       245 ~l~~N~l~  252 (333)
                      ++++|++.
T Consensus       109 ~l~~N~~~  116 (347)
T 2ifg_A          109 VLSGNPLH  116 (347)
T ss_dssp             ECCSSCCC
T ss_pred             EeeCCCcc
Confidence            88887776

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.38  E-value=5.2e-15  Score=130.04  Aligned_cols=166  Identities=17%  Similarity=0.187  Sum_probs=112.8

Q ss_pred             CCCCcEEEccCCcCCCccccccc-----CCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccC
Q 039161           52 YIKLEVVNVENNMISDSFPCWMG-----SLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPS  126 (333)
Q Consensus        52 l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~  126 (333)
                      +++|+.|+|++|.++......+.     ..++|++|+|++|.++......+ ...+++|+.|++++|.++......    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l-~~~L~~L~~L~Ls~n~l~~~~~~~----  145 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL-LPVFLRARKLGLQLNSLGPEACKD----  145 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHT-HHHHHTEEEEECCSSCCCHHHHHH----
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHH-HHHHHhccHhhcCCCCCCHHHHHH----
Confidence            35678888888887753333222     22578888888887653222111 123567889999998876332111    


Q ss_pred             hHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCcc----chhhhhCCCCCCEEEccCCc
Q 039161          127 MEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGE----ISEVLGNFKSLKVLNLSHNS  202 (333)
Q Consensus       127 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~  202 (333)
                         +...                            +....+.|++|++++|.++..    ++..+...++|++|+|++|.
T Consensus       146 ---L~~~----------------------------L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~  194 (372)
T 3un9_A          146 ---LRDL----------------------------LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG  194 (372)
T ss_dssp             ---HHHH----------------------------HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred             ---HHHH----------------------------HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence               1000                            001146799999999998742    44556788999999999999


Q ss_pred             CCCCC----ccccccCCCCcEEeCCCCcCCCC----CCCCccccCccceeecccCccee
Q 039161          203 LTGNI----PVSFENMTALESLDLSFNKLDGR----IPEQLLSVTALALLNLSYNRLWG  253 (333)
Q Consensus       203 l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~l~~N~l~~  253 (333)
                      ++...    +..+...++|++|+|++|.|++.    +...+...++|+.|++++|.|+.
T Consensus       195 l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          195 LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            98533    45667788999999999999863    33344567899999999999963

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.19  E-value=2e-10  Score=101.96  Aligned_cols=63  Identities=21%  Similarity=0.225  Sum_probs=41.9

Q ss_pred             hhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccC
Q 039161          185 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYN  249 (333)
Q Consensus       185 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N  249 (333)
                      ..|..+.+|+.+.+..+ +..+...+|.++.+|+.+++.++ ++.+...+|.++.+|+.+++..+
T Consensus       291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            34666777777777654 55455667777777777777644 55455667777777777777655

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.12  E-value=6.3e-11  Score=103.28  Aligned_cols=190  Identities=13%  Similarity=0.122  Sum_probs=109.7

Q ss_pred             hhhhCCCCccEEECCCCcCc---------CCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCC
Q 039161           23 NTFANASHLRSLDLYSNKLE---------GPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPP   93 (333)
Q Consensus        23 ~~~~~l~~L~~L~Ls~n~l~---------~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~   93 (333)
                      .+...+++|+.|.+......         +.+...+..+++|+.|.+++|.-. ..+. + .+++|++|++..+.+....
T Consensus       133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~  209 (362)
T 2ra8_A          133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSV  209 (362)
T ss_dssp             TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHH
T ss_pred             HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHH
Confidence            34556788888888654321         124455667788888888877311 1222 3 3788888888877765322


Q ss_pred             CCCCCcccCCcccEEEcCC--CcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccce
Q 039161           94 CNSNITFPFQALRIIDLSH--TEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRA  171 (333)
Q Consensus        94 ~~~~~~~~l~~L~~L~ls~--n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  171 (333)
                      ...+....+++|+.|+|+.  |...+..      ....+..+-.                           ...+++|+.
T Consensus       210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~------~~~~l~~~l~---------------------------~~~~p~Lr~  256 (362)
T 2ra8_A          210 VEDILGSDLPNLEKLVLYVGVEDYGFDG------DMNVFRPLFS---------------------------KDRFPNLKW  256 (362)
T ss_dssp             HHHHHHSBCTTCCEEEEECBCGGGTCCS------CGGGTGGGSC---------------------------TTTCTTCCE
T ss_pred             HHHHHHccCCCCcEEEEeccccccccch------hHHHHHHHHh---------------------------cCCCCCcCE
Confidence            1112112578888888753  2211110      0111111000                           011678888


Q ss_pred             EEccCcccCccchhhhh---CCCCCCEEEccCCcCCCCC----ccccccCCCCcEEeCCCCcCCCCCCCCccc-cCccce
Q 039161          172 MDFSSNRFHGEISEVLG---NFKSLKVLNLSHNSLTGNI----PVSFENMTALESLDLSFNKLDGRIPEQLLS-VTALAL  243 (333)
Q Consensus       172 L~ls~n~l~~~~~~~~~---~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~  243 (333)
                      |++++|.+.+..+..+.   .+++|++|+|+.|.+.+..    +..+..+++|+.|+|++|.+++..-..+.. +  ...
T Consensus       257 L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~  334 (362)
T 2ra8_A          257 LGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMK  334 (362)
T ss_dssp             EEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSE
T ss_pred             EeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCE
Confidence            88888877644433333   4678888888888887532    333455688888888888877533222222 1  245


Q ss_pred             eecccCc
Q 039161          244 LNLSYNR  250 (333)
Q Consensus       244 L~l~~N~  250 (333)
                      ++++++.
T Consensus       335 ~~~~~~~  341 (362)
T 2ra8_A          335 IDVSDSQ  341 (362)
T ss_dssp             EECCSBC
T ss_pred             EEecCCc
Confidence            6776665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.11  E-value=2.1e-11  Score=106.27  Aligned_cols=181  Identities=14%  Similarity=0.185  Sum_probs=116.1

Q ss_pred             CCccEEECCCCcCcC-CC-------ChhhcCCCCCcEEEccCCcCC---------CcccccccCCCCCCEEEcccCcCCC
Q 039161           29 SHLRSLDLYSNKLEG-PL-------PRSLAKYIKLEVVNVENNMIS---------DSFPCWMGSLSELKILVLRSNQFDC   91 (333)
Q Consensus        29 ~~L~~L~Ls~n~l~~-~~-------p~~~~~l~~L~~L~L~~n~l~---------~~~~~~~~~l~~L~~L~L~~n~l~~   91 (333)
                      ..++.|.+......+ ..       ..+..++++|+.|.+......         +.+...+..+|+|+.|++++|.-..
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~  186 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS  186 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence            457788887665442 11       233456789999998765331         1233455678999999998873111


Q ss_pred             CCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccce
Q 039161           92 PPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRA  171 (333)
Q Consensus        92 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  171 (333)
                      ..  .   ..+++|+.|++..+.++...       +..+..   .                            .+++|+.
T Consensus       187 l~--~---~~~~~L~~L~L~~~~l~~~~-------l~~l~~---~----------------------------~lp~L~~  223 (362)
T 2ra8_A          187 IG--K---KPRPNLKSLEIISGGLPDSV-------VEDILG---S----------------------------DLPNLEK  223 (362)
T ss_dssp             CC--S---CBCTTCSEEEEECSBCCHHH-------HHHHHH---S----------------------------BCTTCCE
T ss_pred             ec--c---ccCCCCcEEEEecCCCChHH-------HHHHHH---c----------------------------cCCCCcE
Confidence            11  1   23789999999888765321       111110   0                            1577888


Q ss_pred             EEccC--cccCcc-----chhhh--hCCCCCCEEEccCCcCCCCCccccc---cCCCCcEEeCCCCcCCCC----CCCCc
Q 039161          172 MDFSS--NRFHGE-----ISEVL--GNFKSLKVLNLSHNSLTGNIPVSFE---NMTALESLDLSFNKLDGR----IPEQL  235 (333)
Q Consensus       172 L~ls~--n~l~~~-----~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~n~l~~~----~~~~~  235 (333)
                      |+|+.  |...+.     +...+  ..+++|++|+|++|.+....+..+.   .+++|++|+|+.|.+.+.    ++..+
T Consensus       224 L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L  303 (362)
T 2ra8_A          224 LVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHV  303 (362)
T ss_dssp             EEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTH
T ss_pred             EEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhc
Confidence            88753  221111     11222  2578999999999998754333332   478999999999999864    34445


Q ss_pred             cccCccceeecccCcce
Q 039161          236 LSVTALALLNLSYNRLW  252 (333)
Q Consensus       236 ~~l~~L~~L~l~~N~l~  252 (333)
                      ..+++|+.|++++|.++
T Consensus       304 ~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          304 DKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             HHHTTCSEEECCSBBCC
T ss_pred             ccCCcceEEECCCCcCC
Confidence            66789999999999886

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.09  E-value=1.2e-09  Score=96.80  Aligned_cols=80  Identities=11%  Similarity=0.170  Sum_probs=44.4

Q ss_pred             hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161          166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN  245 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  245 (333)
                      +..|+.+.+..+... ....+|..++.|+.+.+. +.+..+...+|.++.+|+.+++..+ ++.+...+|.++.+|+.+.
T Consensus       264 c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~  340 (394)
T 4gt6_A          264 CAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA  340 (394)
T ss_dssp             CSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred             cccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence            456666666544322 444556666666666664 3344344556666666666666543 4434455566666666666


Q ss_pred             ccc
Q 039161          246 LSY  248 (333)
Q Consensus       246 l~~  248 (333)
                      +..
T Consensus       341 ip~  343 (394)
T 4gt6_A          341 IPS  343 (394)
T ss_dssp             ECT
T ss_pred             ECc
Confidence            543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.01  E-value=1.4e-09  Score=96.45  Aligned_cols=219  Identities=12%  Similarity=0.055  Sum_probs=143.3

Q ss_pred             ccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCc
Q 039161           20 HIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNIT   99 (333)
Q Consensus        20 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   99 (333)
                      +...+|.++.+|+.+.+.++. +.....+|.++.+|+.+++..+ ++.....+|..+..|+.+.+..+.... ....   
T Consensus       153 i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i-~~~~---  226 (394)
T 4fs7_A          153 IGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYL-GDFA---  226 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEE-CTTT---
T ss_pred             cchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEe-ehhh---
Confidence            445678888999999998654 3356677888889998888765 554555677788888887776543221 1111   


Q ss_pred             ccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCce---EEee--cCcchhhhhhhhccceEEc
Q 039161          100 FPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESI---TVAM--KGHDFQLQNIFVMFRAMDF  174 (333)
Q Consensus       100 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~L~~L~l  174 (333)
                      ....+|+.+.+.... + .+....+..+..++.+.+..+...+....+....   ....  ..........+.+|+.+.+
T Consensus       227 ~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l  304 (394)
T 4fs7_A          227 LSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKL  304 (394)
T ss_dssp             TTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEE
T ss_pred             cccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecccccccccccccccc
Confidence            234566666664332 2 2333445555666665555544444333322111   0000  0111122233778999998


Q ss_pred             cCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccC
Q 039161          175 SSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYN  249 (333)
Q Consensus       175 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N  249 (333)
                      ..+ ++.....+|..+++|+.+++..+ ++.+...+|.++.+|+.+++..+ ++.+...+|.++.+|+.+++..+
T Consensus       305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          305 LDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             ccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            765 66566778999999999999754 77677789999999999999887 66567789999999999998765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.93  E-value=6.6e-09  Score=92.07  Aligned_cols=110  Identities=18%  Similarity=0.224  Sum_probs=83.2

Q ss_pred             cccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCc
Q 039161          123 IFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNS  202 (333)
Q Consensus       123 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  202 (333)
                      .|..+..|+.+.+......++...+..                +..|+.+.+. +.++.....+|..+.+|+.++|..+ 
T Consensus       260 aF~~c~~L~~i~lp~~~~~I~~~aF~~----------------c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-  321 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVSIGTGAFMN----------------CPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-  321 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCEECTTTTTT----------------CTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-
T ss_pred             eeeecccccEEecccccceecCccccc----------------ccccccccCC-CcccccCceeecCCCCcCEEEeCCc-
Confidence            466667777777766555555444433                6788888886 4455466678999999999999865 


Q ss_pred             CCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcc
Q 039161          203 LTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL  251 (333)
Q Consensus       203 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l  251 (333)
                      ++.+...+|.++.+|+.+.+..+ ++.+...+|.++++|+.+++.++..
T Consensus       322 v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          322 ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence            66566788999999999999765 6656677899999999999998765

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.82  E-value=8.1e-08  Score=84.56  Aligned_cols=82  Identities=15%  Similarity=0.158  Sum_probs=48.1

Q ss_pred             hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161          166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN  245 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  245 (333)
                      +..|+.+.+..+ ++.....+|..+.+|+.+.+..+ +......+|.++.+|+.+.+.++.++.+....|.++.+|+.++
T Consensus       239 ~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~  316 (379)
T 4h09_A          239 MKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVT  316 (379)
T ss_dssp             CSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred             CccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEE
Confidence            455666666544 44344455666666666666533 4434445666666666666666666645555666666666666


Q ss_pred             cccC
Q 039161          246 LSYN  249 (333)
Q Consensus       246 l~~N  249 (333)
                      +..+
T Consensus       317 lp~~  320 (379)
T 4h09_A          317 LPTA  320 (379)
T ss_dssp             CCTT
T ss_pred             cCcc
Confidence            6543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.68  E-value=2.7e-09  Score=84.05  Aligned_cols=111  Identities=18%  Similarity=0.162  Sum_probs=76.5

Q ss_pred             cccEEECcCC-ccccc----cchhhhCCCCccEEECCCCcCcCC----CChhhcCCCCCcEEEccCCcCCCc----cccc
Q 039161            6 ELITLHLENN-SLEGH----IHNTFANASHLRSLDLYSNKLEGP----LPRSLAKYIKLEVVNVENNMISDS----FPCW   72 (333)
Q Consensus         6 ~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~   72 (333)
                      .|++|+|++| .+...    +...+...++|++|+|++|.++..    +...+...++|++|+|++|.|++.    +...
T Consensus        37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~  116 (185)
T 1io0_A           37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA  116 (185)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred             CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence            6888888888 87643    334556678888899998888642    334455667888899988888754    3445


Q ss_pred             ccCCCCCCEEEc--ccCcCCCCCCCCC--CcccCCcccEEEcCCCccc
Q 039161           73 MGSLSELKILVL--RSNQFDCPPCNSN--ITFPFQALRIIDLSHTEFT  116 (333)
Q Consensus        73 ~~~l~~L~~L~L--~~n~l~~~~~~~~--~~~~l~~L~~L~ls~n~l~  116 (333)
                      +...++|++|+|  ++|.+.......+  .....++|++|++++|.+.
T Consensus       117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            666778888888  7787764321111  1133577888888888775

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.65  E-value=2.2e-08  Score=82.94  Aligned_cols=103  Identities=20%  Similarity=0.220  Sum_probs=72.6

Q ss_pred             cccE--EECcCCccc---cccchhhhCCCCccEEECCCCcCcC--CCChhhcCCCCCcEEEccCCcCCCcccccccCCC-
Q 039161            6 ELIT--LHLENNSLE---GHIHNTFANASHLRSLDLYSNKLEG--PLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLS-   77 (333)
Q Consensus         6 ~L~~--L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-   77 (333)
                      .|+.  ++++.|...   ...+....++++|++|+|++|++++  .+|..+..+++|+.|+|++|.+++.  ..+..+. 
T Consensus       142 ~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~  219 (267)
T 3rw6_A          142 DLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKG  219 (267)
T ss_dssp             HHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTT
T ss_pred             chhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhccc
Confidence            3444  677777433   3333333678999999999999987  4456778899999999999999864  2233333 


Q ss_pred             -CCCEEEcccCcCCCCCCCC-----CCcccCCcccEEEc
Q 039161           78 -ELKILVLRSNQFDCPPCNS-----NITFPFQALRIIDL  110 (333)
Q Consensus        78 -~L~~L~L~~n~l~~~~~~~-----~~~~~l~~L~~L~l  110 (333)
                       +|++|+|++|.+.+..+..     .....+++|+.||-
T Consensus       220 l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          220 LKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             SCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             CCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence             9999999999987644321     12256888988864

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.61  E-value=6.8e-09  Score=81.75  Aligned_cols=19  Identities=11%  Similarity=0.057  Sum_probs=10.7

Q ss_pred             cccCCCCCCEEEcccC-cCC
Q 039161           72 WMGSLSELKILVLRSN-QFD   90 (333)
Q Consensus        72 ~~~~l~~L~~L~L~~n-~l~   90 (333)
                      .+...++|++|+|++| .+.
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~   50 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIP   50 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCC
T ss_pred             HHhcCCCCCEEEecCCCCCC
Confidence            3445566666666665 543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.53  E-value=9.5e-08  Score=79.13  Aligned_cols=67  Identities=30%  Similarity=0.315  Sum_probs=39.1

Q ss_pred             hCCCCCCEEEccCCcCCC--CCccccccCCCCcEEeCCCCcCCCCCCCCccccC--ccceeecccCcceecCC
Q 039161          188 GNFKSLKVLNLSHNSLTG--NIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT--ALALLNLSYNRLWGRIP  256 (333)
Q Consensus       188 ~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~l~~N~l~~~~p  256 (333)
                      ..+++|+.|+|++|.+++  .++..+..+++|+.|+|++|.|++.  ..+..+.  +|+.|++++|++++.+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            345666666666666665  2334555666666666666666643  2223333  66666666766665554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.44  E-value=2e-06  Score=75.63  Aligned_cols=218  Identities=13%  Similarity=0.091  Sum_probs=141.9

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCC------------cccccc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISD------------SFPCWM   73 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~------------~~~~~~   73 (333)
                      +|+.+.+..+ ++.+...+|.+ ..++.+.+..+ ++.....+|..+..++.+....+....            .....+
T Consensus       114 ~L~~i~lp~~-~~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (379)
T 4h09_A          114 DLDDFEFPGA-TTEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESY  190 (379)
T ss_dssp             CCSEEECCTT-CCEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEEC
T ss_pred             CcccccCCCc-ccccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccc
Confidence            4677777654 33344455655 46777777654 444566778888888888876544321            122234


Q ss_pred             cCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEE
Q 039161           74 GSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITV  153 (333)
Q Consensus        74 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~  153 (333)
                      .....+..+.+.... .......+  ....+|+.+.+..+ ++ .+....+..+..|+.+.+..+...++...+..    
T Consensus       191 ~~~~~~~~~~~~~~~-~~i~~~~f--~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~----  261 (379)
T 4h09_A          191 PAAKTGTEFTIPSTV-KTVTAYGF--SYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKNVTSIGSFLLQN----  261 (379)
T ss_dssp             CTTCCCSEEECCTTC-CEECTTTT--TTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTTCCEECTTTTTT----
T ss_pred             cccccccccccccce-eEEeeccc--ccccccceeeeccc-ee-EEccccccCCccceEEEcCCCccEeCccccce----
Confidence            455566666554432 11222222  45667777777654 22 33444566677777777766655555444433    


Q ss_pred             eecCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCC
Q 039161          154 AMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE  233 (333)
Q Consensus       154 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  233 (333)
                                  +..|+.+.+..+ +......+|..+++|+.+.+.++.++.+...+|.++.+|+.++|..+ ++.+...
T Consensus       262 ------------~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~  327 (379)
T 4h09_A          262 ------------CTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVY  327 (379)
T ss_dssp             ------------CTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred             ------------eehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHH
Confidence                        567788887654 55455667889999999999988888777888999999999999765 6656677


Q ss_pred             CccccCccceeecccC
Q 039161          234 QLLSVTALALLNLSYN  249 (333)
Q Consensus       234 ~~~~l~~L~~L~l~~N  249 (333)
                      +|.++.+|+.+.+..+
T Consensus       328 aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          328 AFKNCKALSTISYPKS  343 (379)
T ss_dssp             TTTTCTTCCCCCCCTT
T ss_pred             HhhCCCCCCEEEECCc
Confidence            8999999999888654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.44  E-value=6.4e-08  Score=74.54  Aligned_cols=84  Identities=12%  Similarity=0.047  Sum_probs=53.9

Q ss_pred             CCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCc-CCCcccccccCC----CCCCEEEcccCc-CCCCCCCCCCcccC
Q 039161           29 SHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM-ISDSFPCWMGSL----SELKILVLRSNQ-FDCPPCNSNITFPF  102 (333)
Q Consensus        29 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~~~l  102 (333)
                      -.|++||++++.++..--..+.++++|++|+|++|. +++..-..+..+    ++|++|+|++|. ++...-..+  ..+
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L--~~~  138 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL--HHF  138 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG--GGC
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH--hcC
Confidence            457788888777775555556777788888888774 665444445543    367888887764 543221122  456


Q ss_pred             CcccEEEcCCCc
Q 039161          103 QALRIIDLSHTE  114 (333)
Q Consensus       103 ~~L~~L~ls~n~  114 (333)
                      ++|++|+++++.
T Consensus       139 ~~L~~L~L~~c~  150 (176)
T 3e4g_A          139 RNLKYLFLSDLP  150 (176)
T ss_dssp             TTCCEEEEESCT
T ss_pred             CCCCEEECCCCC
Confidence            788888887764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.22  E-value=2e-07  Score=71.71  Aligned_cols=84  Identities=10%  Similarity=0.064  Sum_probs=67.9

Q ss_pred             hccceEEccCcccCccchhhhhCCCCCCEEEccCCc-CCCCCccccccC----CCCcEEeCCCCc-CCCCCCCCccccCc
Q 039161          167 VMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNS-LTGNIPVSFENM----TALESLDLSFNK-LDGRIPEQLLSVTA  240 (333)
Q Consensus       167 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~Ls~n~-l~~~~~~~~~~l~~  240 (333)
                      ..|+.||++++.++..--..+..+++|++|+|++|. ++...-..+..+    ++|++|+|++|. |++..-..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            468999999999987766778899999999999995 775444445553    479999999984 88755556778999


Q ss_pred             cceeecccCc
Q 039161          241 LALLNLSYNR  250 (333)
Q Consensus       241 L~~L~l~~N~  250 (333)
                      |+.|+++++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999985

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.42  E-value=0.00014  Score=56.92  Aligned_cols=89  Identities=16%  Similarity=0.172  Sum_probs=46.9

Q ss_pred             hhCCCCccEEECCCC-cCcC----CCChhhcCCCCCcEEEccCCcCCCcccc----cccCCCCCCEEEcccCcCCCCCCC
Q 039161           25 FANASHLRSLDLYSN-KLEG----PLPRSLAKYIKLEVVNVENNMISDSFPC----WMGSLSELKILVLRSNQFDCPPCN   95 (333)
Q Consensus        25 ~~~l~~L~~L~Ls~n-~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~   95 (333)
                      +.+-+.|++|+|++| .|..    .+..++...+.|+.|+|++|.+.+....    .+..-+.|++|+|++|.+......
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            344566777777664 5542    1333445556677777777776643322    233446677777777766432111


Q ss_pred             CC--CcccCCcccEEEcCCC
Q 039161           96 SN--ITFPFQALRIIDLSHT  113 (333)
Q Consensus        96 ~~--~~~~l~~L~~L~ls~n  113 (333)
                      .+  ....-+.|++|++++|
T Consensus       117 ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhhCCceeEEECCCC
Confidence            10  0022345777777654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.26  E-value=0.00053  Score=50.04  Aligned_cols=36  Identities=17%  Similarity=0.243  Sum_probs=16.6

Q ss_pred             CCcEEEccCCcCCCcccccccCCCCCCEEEcccCcC
Q 039161           54 KLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQF   89 (333)
Q Consensus        54 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   89 (333)
                      +|++|+|++|.|+...+..|..+++|++|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            344455555554443333444444444444444443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.24  E-value=0.00067  Score=49.51  Aligned_cols=57  Identities=19%  Similarity=0.215  Sum_probs=37.0

Q ss_pred             ceEEccCcccC-ccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCC
Q 039161          170 RAMDFSSNRFH-GEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD  228 (333)
Q Consensus       170 ~~L~ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  228 (333)
                      ..++.++++++ ..+|..+  .++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36777777765 2444332  235777777777777666666777777777777777665

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.20  E-value=0.00016  Score=56.62  Aligned_cols=84  Identities=13%  Similarity=0.170  Sum_probs=58.1

Q ss_pred             hhccceEEccCc-ccCc----cchhhhhCCCCCCEEEccCCcCCCCC----ccccccCCCCcEEeCCCCcCCCC----CC
Q 039161          166 FVMFRAMDFSSN-RFHG----EISEVLGNFKSLKVLNLSHNSLTGNI----PVSFENMTALESLDLSFNKLDGR----IP  232 (333)
Q Consensus       166 ~~~L~~L~ls~n-~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~----~~  232 (333)
                      .+.|++|+|++| ++..    .+.+.+..-+.|+.|+|++|.+....    .+.+..-+.|++|+|++|.|.+.    +.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            467888888875 6653    24555666778888888888887432    33444567888888888888753    23


Q ss_pred             CCccccCccceeecccC
Q 039161          233 EQLLSVTALALLNLSYN  249 (333)
Q Consensus       233 ~~~~~l~~L~~L~l~~N  249 (333)
                      +.+..-+.|+.|+|++|
T Consensus       120 ~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHTTTTCCCSEEECCCC
T ss_pred             HHHhhCCceeEEECCCC
Confidence            34455566888888765

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=83.46  E-value=2.5  Score=28.68  Aligned_cols=45  Identities=18%  Similarity=0.196  Sum_probs=20.7

Q ss_pred             CcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEccc
Q 039161           41 LEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRS   86 (333)
Q Consensus        41 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   86 (333)
                      ++.+-..+|.+|.+|+.+.+-.+ ++.....+|..|.+|+.+.+..
T Consensus         8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~   52 (100)
T 2lz0_A            8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG   52 (100)
T ss_dssp             CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred             cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence            33333444555555555554432 2323344555555555555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	333
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-10
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-08
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-08
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	9e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	8e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	6e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 78.1 bits (191), Expect = 8e-17
 Identities = 36/230 (15%), Positives = 78/230 (33%), Gaps = 34/230 (14%)

Query: 20  HIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSEL 79
              +  A  ++L SL   +N++    P  +     L+ +++  N + D     + SL+ L
Sbjct: 188 SDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNL 243

Query: 80  KILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRL 139
             L L +NQ       S +T     L  + L   + +   P     ++  ++  +     
Sbjct: 244 TDLDLANNQISNLAPLSGLT----KLTELKLGANQISNISPLAGLTALTNLELNE----- 294

Query: 140 EYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLS 199
                           +  D    +       +    N         + +   L+ L  +
Sbjct: 295 ---------------NQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFA 337

Query: 200 HNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYN 249
           +N ++     S  N+T +  L    N++    P  L ++T +  L L+  
Sbjct: 338 NNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.6 bits (143), Expect = 1e-10
 Identities = 37/198 (18%), Positives = 67/198 (33%), Gaps = 32/198 (16%)

Query: 62  NNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPR 121
           NN ISD  P  + +   L  L L  NQ       ++       L  +DL++ + +   P 
Sbjct: 206 NNQISDITPLGILT--NLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPL 259

Query: 122 RIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHG 181
                +           L+       + S    +        N   +      S      
Sbjct: 260 SGLTKLT---------ELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS------ 304

Query: 182 EISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTAL 241
                  N K+L  L L  N+++   P    ++T L+ L  + NK+       L ++T +
Sbjct: 305 -------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNI 353

Query: 242 ALLNLSYNRLWGRIPRGN 259
             L+  +N++    P  N
Sbjct: 354 NWLSAGHNQISDLTPLAN 371

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.5 bits (127), Expect = 1e-08
 Identities = 43/258 (16%), Positives = 85/258 (32%), Gaps = 21/258 (8%)

Query: 5   TELITLHLENN---SLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVE 61
            ++ TL  +     S++G         ++L  ++  +N+L    P  L    KL  + + 
Sbjct: 44  DQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMN 96

Query: 62  NNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPR 121
           NN I+D  P    +      L         P  N       +         +  +G    
Sbjct: 97  NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 156

Query: 122 RIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHG 181
           +       + ++     L  + R     +        D  +        ++  ++N+   
Sbjct: 157 QQLSFGNQVTDLKPLANLTTLERLDISSNKV-----SDISVLAKLTNLESLIATNNQISD 211

Query: 182 EISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTAL 241
                     +L  L+L+ N L      +  ++T L  LDL+ N++    P  L  +T L
Sbjct: 212 ITPLG--ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKL 265

Query: 242 ALLNLSYNRLWGRIPRGN 259
             L L  N++    P   
Sbjct: 266 TELKLGANQISNISPLAG 283

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 6e-04
 Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
           T+L  L   NN +     ++ AN +++  L    N++    P  LA   ++  + + + 
Sbjct: 329 TKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 6/97 (6%)

Query: 173 DFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 232
                     +S+   +   +  L      +  +I    E +  L  ++ S N+L    P
Sbjct: 28  VLGKTNVTDTVSQ--TDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP 83

Query: 233 EQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSY 269
             L ++T L  + ++ N++    P  N  N      +
Sbjct: 84  --LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 118

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 76.3 bits (186), Expect = 2e-16
 Identities = 49/267 (18%), Positives = 80/267 (29%), Gaps = 9/267 (3%)

Query: 27  NASHLRSLDLYSNKLEG--PLPRSLAKYIKLEVVNVENNM-ISDSFPCWMGSLSELKILV 83
               + +LDL    L    P+P SLA    L  + +     +    P  +  L++L  L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 84  LRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMG 143
           +          +               +    T        P++  +     +       
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 144 RAFCDESITVAMKGHDFQLQNIFVMFRAMDFS-----SNRFHGEISEVLGNFKSLKVLNL 198
                  +  +M     +L        A         S       + VL           
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 199 SHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG 258
              +              L  LDL  N++ G +P+ L  +  L  LN+S+N L G IP+G
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

Query: 259 NQFNTFQNDSYIGNIRLCGEPLTVRCS 285
                F   +Y  N  LCG PL   C+
Sbjct: 288 GNLQRFDVSAYANNKCLCGSPLPA-CT 313

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.9 bits (154), Expect = 4e-12
 Identities = 40/259 (15%), Positives = 87/259 (33%), Gaps = 35/259 (13%)

Query: 2   SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVE 61
               +   L L+NN +       F N  +L +L L +NK+    P + A  +KLE + + 
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 62  NNMISDSFPCWMGSLSEL---------------------KILVLRSNQFDCPPCNSNITF 100
            N + +       +L EL                      ++ L +N        +    
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 101 PFQALRIIDLSHTEFTGFLPRRIFPSMEAMK------NVDEQGRLEYMGRAFCDESITVA 154
             + L  I ++ T  T  +P+ + PS+  +          +   L+ +           +
Sbjct: 148 GMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 155 MKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSF--- 211
           +   D          R +  ++N+       +  + K ++V+ L +N+++      F   
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGL-ADHKYIQVVYLHNNNISAIGSNDFCPP 265

Query: 212 ---ENMTALESLDLSFNKL 227
                  +   + L  N +
Sbjct: 266 GYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.8 bits (146), Expect = 4e-11
 Identities = 52/271 (19%), Positives = 85/271 (31%), Gaps = 23/271 (8%)

Query: 29  SHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQ 88
                LDL +NK+             L  + + NN IS   P     L +L+ L L  NQ
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 89  FDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCD 148
               P    +    Q LR+ +   T+    +   +   +      +          AF  
Sbjct: 91  LKELP--EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 149 ESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIP 208
                 ++  D  +  I                      G   SL  L+L  N +T    
Sbjct: 149 MKKLSYIRIADTNITTIP--------------------QGLPPSLTELHLDGNKITKVDA 188

Query: 209 VSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDS 268
            S + +  L  L LSFN +       L +   L  L+L+ N+L  ++P G   + +    
Sbjct: 189 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 247

Query: 269 YIGNIRLCGEPLTVRCSNDGLPKAPRLASFD 299
           Y+ N  +        C      K    +   
Sbjct: 248 YLHNNNISAIGSNDFCPPGYNTKKASYSGVS 278

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.8 bits (120), Expect = 7e-08
 Identities = 20/117 (17%), Positives = 40/117 (34%)

Query: 163 QNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDL 222
           +++      +D  +N+          N K+L  L L +N ++   P +F  +  LE L L
Sbjct: 27  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 223 SFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEP 279
           S N+L     +   ++  L +      ++   +  G                   E 
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 143

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.7 bits (138), Expect = 2e-10
 Identities = 26/219 (11%), Positives = 60/219 (27%), Gaps = 12/219 (5%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
              I +    +++   +  T A+   + +L  +   +       +     L  + +++N 
Sbjct: 19  ANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQ 74

Query: 65  ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIF 124
           I                 +  S                + L +     T+ T        
Sbjct: 75  I---TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 125 PSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEIS 184
             +    N                 SI  A       L N+  +   +    N+      
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKL-TTLKADDNKISDISP 190

Query: 185 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLS 223
             L +  +L  ++L +N ++   P    N + L  + L+
Sbjct: 191 --LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.4 bits (132), Expect = 1e-09
 Identities = 25/222 (11%), Positives = 62/222 (27%), Gaps = 12/222 (5%)

Query: 26  ANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85
              ++   +    + +   +  + A    +  ++     ++      +  L+ L  L L+
Sbjct: 16  PALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELK 71

Query: 86  SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRA 145
            NQ        N+T   +     +           + I         + +   L  +   
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 146 FCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTG 205
                           +  +  +      S           L N   L  L    N ++ 
Sbjct: 132 QV----LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD 187

Query: 206 NIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLS 247
             P    ++  L  + L  N++    P  L + + L ++ L+
Sbjct: 188 ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 4e-10
 Identities = 30/227 (13%), Positives = 57/227 (25%), Gaps = 25/227 (11%)

Query: 2   SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVE 61
           S     + ++ +  +L     +   +      L L  N L      +L  Y +L  +N++
Sbjct: 7   SKVASHLEVNCDKRNLTALPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 62  NNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPR 121
              ++         +     L     Q       +        +    L+          
Sbjct: 64  RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 122 RIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHG 181
                +    N                      +K     L         +  ++N    
Sbjct: 124 GELQELYLKGNE---------------------LKTLPPGLLTPTPKLEKLSLANNNLTE 162

Query: 182 EISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 228
             + +L   ++L  L L  NSL   IP  F     L    L  N   
Sbjct: 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 12/48 (25%), Positives = 18/48 (37%)

Query: 190 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS 237
            K   +L+LS N L      +    T L  L+L   +L     +  L 
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP 77

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 7e-04
 Identities = 17/65 (26%), Positives = 21/65 (32%), Gaps = 3/65 (4%)

Query: 188 GNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLS 247
               S   +N    +LT  +P           L LS N L       L+  T L  LNL 
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 248 YNRLW 252
              L 
Sbjct: 64  RAELT 68

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 5e-09
 Identities = 38/261 (14%), Positives = 75/261 (28%), Gaps = 15/261 (5%)

Query: 2   SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVE 61
                   + L  N +      +F    +L  L L+SN L      +      LE +++ 
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 62  NNM-ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLP 120
           +N  +    P     L  L  L L  ++         +     AL+ + L          
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHL--DRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146

Query: 121 RRIFPSMEAMKNVDEQGRLEYMGRAFCD--ESITVAMKGHDFQLQ------NIFVMFRAM 172
                            R+  +         S+   +   +                  +
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 173 DFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 232
              +N      +E L   ++L+ L L+ N    +          L+    S +++   +P
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLP 265

Query: 233 EQLLSVTALALLNLSYNRLWG 253
           ++L       L  L+ N L G
Sbjct: 266 QRL---AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 40/255 (15%), Positives = 74/255 (29%), Gaps = 17/255 (6%)

Query: 29  SHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQ 88
           +  + + L+ N++      S      L ++ + +N+++         L+ L+ L L  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 89  FDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCD 148
                  +        L  + L         P              +   L+        
Sbjct: 92  QLRSVDPATFHG-LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-------- 142

Query: 149 ESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIP 208
            ++          L ++F+         NR             SL  L L  N +    P
Sbjct: 143 -ALPDDTFRDLGNLTHLFLHG-------NRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194

Query: 209 VSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDS 268
            +F ++  L +L L  N L     E L  + AL  L L+ N           +   Q   
Sbjct: 195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFR 254

Query: 269 YIGNIRLCGEPLTVR 283
              +   C  P  + 
Sbjct: 255 GSSSEVPCSLPQRLA 269

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (123), Expect = 2e-08
 Identities = 22/208 (10%), Positives = 53/208 (25%), Gaps = 10/208 (4%)

Query: 29  SHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQ 88
            +   L     KL      + + +  LE + +  N + +     + S       +     
Sbjct: 29  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 89  FDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCD 148
            +    N         L+ + +S+T            S++ +    +     +       
Sbjct: 89  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148

Query: 149 E---------SITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEIS-EVLGNFKSLKVLNL 198
                      +                    ++ S N    E+  +V        +L++
Sbjct: 149 VGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 208

Query: 199 SHNSLTGNIPVSFENMTALESLDLSFNK 226
           S   +        EN+  L +      K
Sbjct: 209 SRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.2 bits (121), Expect = 3e-08
 Identities = 22/197 (11%), Positives = 59/197 (29%), Gaps = 10/197 (5%)

Query: 27  NASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRS 86
             +     +L    +   + ++      ++ +   N+ I       +  L  +  L L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQNELN--SIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 87  NQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAF 146
           N+       +N          +D +  +    L         ++++         +    
Sbjct: 78  NKLTDIKPLAN--LKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ 135

Query: 147 CDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGN 206
            +       K  D  + +       +    N+    +   L     L+ L LS N ++ +
Sbjct: 136 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-D 192

Query: 207 IPVSFENMTALESLDLS 223
           +  +   +  L+ L+L 
Sbjct: 193 LR-ALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 26/200 (13%), Positives = 65/200 (32%), Gaps = 13/200 (6%)

Query: 48  SLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRI 107
           + A+ IK    N++   ++D+       L+ +  ++  ++          +      +  
Sbjct: 22  AFAETIKD---NLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLP----NVTK 72

Query: 108 IDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFV 167
           + L+  + T   P     ++  +   + + +     +                 +  +  
Sbjct: 73  LFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVH 132

Query: 168 MFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 227
           + +               VL     L  L+L  N ++  +P     +T L++L LS N +
Sbjct: 133 LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190

Query: 228 DGRIPEQLLSVTALALLNLS 247
                  L  +  L +L L 
Sbjct: 191 SD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 9e-04
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 189 NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSY 248
            F      NL   S+T    V+   + +++ +  + + +      Q L    +  L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQYL--PNVTKLFLNG 77

Query: 249 NRLWGRIPRGN 259
           N+L    P  N
Sbjct: 78  NKLTDIKPLAN 88

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (121), Expect = 5e-08
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 5/89 (5%)

Query: 170 RAMDFSSNRF-HGEISEVLGNFKSLKVLNLSHNSLTG----NIPVSFENMTALESLDLSF 224
           +++D           +E+L   +  +V+ L    LT     +I  +     AL  L+L  
Sbjct: 5   QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 64

Query: 225 NKLDGRIPEQLLSVTALALLNLSYNRLWG 253
           N+L       +L         +    L  
Sbjct: 65  NELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 7e-07
 Identities = 19/161 (11%), Positives = 42/161 (26%), Gaps = 9/161 (5%)

Query: 87  NQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAF 146
           +       +       + L                          +V  Q R     +  
Sbjct: 289 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 348

Query: 147 CDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGE----ISEVLGNFKSLKVLNLSHNS 202
            +      ++     L     + R +  +           ++  L    SL+ L+LS+N 
Sbjct: 349 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 408

Query: 203 LTGNIPVSF-----ENMTALESLDLSFNKLDGRIPEQLLSV 238
           L     +       +    LE L L        + ++L ++
Sbjct: 409 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 8e-07
 Identities = 25/208 (12%), Positives = 53/208 (25%), Gaps = 9/208 (4%)

Query: 59  NVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGF 118
            + +  +++  P  +   S L+ L +         C            + +LS       
Sbjct: 237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 296

Query: 119 LPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNR 178
                      ++   +   L     +F     +            + +           
Sbjct: 297 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 356

Query: 179 FHGEISEVLGNFKSLKVLNLSHNSLTGN----IPVSFENMTALESLDLSFNKLDGRIPEQ 234
                  +      L+VL L+   ++ +    +  +     +L  LDLS N L      Q
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 416

Query: 235 LLSV-----TALALLNLSYNRLWGRIPR 257
           L+         L  L L        +  
Sbjct: 417 LVESVRQPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 9e-05
 Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 192 SLKVLNLSHNSLTGN-IPVSFENMTALESLDLSFNKLDGR----IPEQLLSVTALALLNL 246
            ++ L++    L+          +   + + L    L       I   L    ALA LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 247 SYNRL 251
             N L
Sbjct: 63  RSNEL 67

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 13/89 (14%)

Query: 7   LITLHLENNSLEG----HIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIK-----LEV 57
           L  L L +  +       +  T      LR LDL +N L       L + ++     LE 
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 58  VNVENNMISDSFPCWMGSLSE----LKIL 82
           + + +   S+     + +L +    L+++
Sbjct: 431 LVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.002
 Identities = 13/101 (12%), Positives = 33/101 (32%), Gaps = 10/101 (9%)

Query: 4   STELITLHLENNSL-EGHIHNTFANASHLRSLDLYSNKLEG----PLPRSLAKYIKLEVV 58
           S ++ +L ++   L +             + + L    L       +  +L     L  +
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 59  NVENNMISDSFPCWMGSL-----SELKILVLRSNQFDCPPC 94
           N+ +N + D     +         +++ L L++       C
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 101

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 7e-06
 Identities = 38/250 (15%), Positives = 77/250 (30%), Gaps = 21/250 (8%)

Query: 3   FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEG-PLPRSLAKYIKLEVVNVE 61
            S  +I      + ++  +   F+    ++ +DL ++ +E   L   L++  KL+ +++E
Sbjct: 21  LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 79

Query: 62  NNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPR 121
              +SD     +   S L  L L             +      L  ++LS          
Sbjct: 80  GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV 139

Query: 122 RIFPSMEAMKNVDEQGRLEYMGRAF---------------CDESITVAMKGHDFQLQNIF 166
           ++  +  +                                 D S +V +K   FQ     
Sbjct: 140 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL 199

Query: 167 VMFRAMDFSS-NRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFN 225
              + +  S       E    LG   +LK L +      G + +  E   AL  L ++ +
Sbjct: 200 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKE---ALPHLQINCS 256

Query: 226 KLDGRIPEQL 235
                    +
Sbjct: 257 HFTTIARPTI 266

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 1e-05
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 3/87 (3%)

Query: 189 NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSY 248
           N    + L+L    +   I      +   +++D S N++       LL    L  L ++ 
Sbjct: 16  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFPLL--RRLKTLLVNN 72

Query: 249 NRLWGRIPRGNQFNTFQNDSYIGNIRL 275
           NR+       +Q      +  + N  L
Sbjct: 73  NRICRIGEGLDQALPDLTELILTNNSL 99

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 8e-04
 Identities = 19/125 (15%), Positives = 42/125 (33%), Gaps = 9/125 (7%)

Query: 24  TFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILV 83
            + NA   R LDL   K+   +    A   + + ++  +N I          L  LK L+
Sbjct: 13  QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLL 69

Query: 84  LRSNQFDCPPCNSNITFPFQ------ALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQG 137
           + +N+        +   P           +++L   +    L    +  +      +++ 
Sbjct: 70  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 129

Query: 138 RLEYM 142
              Y+
Sbjct: 130 YRLYV 134

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.0 bits (97), Expect = 3e-05
 Identities = 21/197 (10%), Positives = 53/197 (26%), Gaps = 14/197 (7%)

Query: 26  ANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85
              +      L    +   +  S     ++  +  +   I       +  L+ L  +   
Sbjct: 15  TALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFS 70

Query: 86  SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRA 145
           +NQ        N+T                       +              ++  +   
Sbjct: 71  NNQLTDITPLKNLTKLVDI------LMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL 124

Query: 146 FCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEV--LGNFKSLKVLNLSHNSL 203
               ++       +       +         N    +++++  L N  +L+ L++S N +
Sbjct: 125 KNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKV 184

Query: 204 TGNIPVSFENMTALESL 220
           +         +T LESL
Sbjct: 185 SD--ISVLAKLTNLESL 199

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 27/180 (15%), Positives = 57/180 (31%), Gaps = 16/180 (8%)

Query: 62  NNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPR 121
           + +  ++    +  L  L  L       +      ++    +AL + D   T+       
Sbjct: 186 SIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQS 245

Query: 122 RIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHG 181
             F  +              +       +   ++      L+ +       + S+N+   
Sbjct: 246 LTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEEL-------NVSNNK--- 295

Query: 182 EISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTAL 241
            + E+      L+ L  S N L   +P   +N   L+ L + +N L    P+   SV  L
Sbjct: 296 -LIELPALPPRLERLIASFNHLA-EVPELPQN---LKQLHVEYNPLRE-FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 5   TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
             L  L++ NN L   +         L  L    N L   +P        L+ ++VE N 
Sbjct: 284 PSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLAE-VPELPQN---LKQLHVEYNP 335

Query: 65  ISDSFPCWMGSLSELKI 81
           +   FP    S+ +L++
Sbjct: 336 LR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 5e-04
 Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 8/90 (8%)

Query: 191 KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNR 250
           +    L L++  L+ ++P    +   LESL  S N L   +PE   S   L  L +  N 
Sbjct: 38  RQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQS---LKSLLVDNNN 89

Query: 251 LWGRIPRGNQFNTFQNDSYIGNIRLCGEPL 280
           L                +         +  
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNS 119

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 8/83 (9%)

Query: 11  HLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFP 70
               N+    I +       L  L++ +NKL   LP       +LE +    N ++   P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPP---RLERLIASFNHLA-EVP 320

Query: 71  CWMGSLSELKILVLRSNQFDCPP 93
               +L +L    +  N     P
Sbjct: 321 ELPQNLKQLH---VEYNPLREFP 340

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.8 bits (96), Expect = 7e-05
 Identities = 12/104 (11%), Positives = 32/104 (30%), Gaps = 13/104 (12%)

Query: 155 MKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGN------FKSLKVLNLSHNSLTGNIP 208
                      +   R +  +        +  + +         L+ L L +N +  +  
Sbjct: 231 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 290

Query: 209 VS-----FENMTALESLDLSFNKL--DGRIPEQLLSVTALALLN 245
            +      E M  L  L+L+ N+   +  + +++  V +     
Sbjct: 291 RTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRG 334

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 27/285 (9%), Positives = 74/285 (25%), Gaps = 37/285 (12%)

Query: 4   STELITLHLENNSLEG----HIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVN 59
              +  + L  N++       +    A+   L   +                   L    
Sbjct: 30  DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 89

Query: 60  VENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFL 119
           ++   +              +  ++       P  +  +       +             
Sbjct: 90  LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA 149

Query: 120 PRRIFPSMEAMKNVDEQG----------------------RLEYMGRAFCDESITVAMKG 157
             +   +   ++++                           ++ +      E I   +  
Sbjct: 150 VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE 209

Query: 158 HDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPV------SF 211
                Q + V+    +  ++     ++  L ++ +L+ L L+   L+           S 
Sbjct: 210 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 269

Query: 212 ENMTALESLDLSFNKLDGRIPEQLLSV-----TALALLNLSYNRL 251
                L++L L +N+++      L +V       L  L L+ NR 
Sbjct: 270 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 1e-04
 Identities = 24/104 (23%), Positives = 34/104 (32%), Gaps = 24/104 (23%)

Query: 170 RAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPV-------------------- 209
           R +  +       +   L     +  L+LSHN L    P                     
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 210 -SFENMTALESLDLSFNKL-DGRIPEQLLSVTALALLNLSYNRL 251
               N+  L+ L L  N+L      + L+S   L LLNL  N L
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.2 bits (87), Expect = 6e-04
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 11  HLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFP 70
            L  N ++   +  F     L++L+LY N++   +P S      L  +N+ +N  + +  
Sbjct: 84  QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143

Query: 71  CWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFT 116
               +    K   L      C           + ++I DL H+EF 
Sbjct: 144 LAWFAEWLRK-KSLNGGAARC-----GAPSKVRDVQIKDLPHSEFK 183

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 2/84 (2%)

Query: 175 SSNRFHGEISEVLGNFKSLKVLNLSHNSLTG--NIPVSFENMTALESLDLSFNKLDGRIP 232
             +     +  +  N   L  LNLS+N L    ++    +    L+ L+LS N+L     
Sbjct: 49  RRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE 108

Query: 233 EQLLSVTALALLNLSYNRLWGRIP 256
              +    L  L L  N L     
Sbjct: 109 LDKIKGLKLEELWLDGNSLSDTFR 132

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	333
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.94
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.89
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.87
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.86
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.85
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.84
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.8
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.79
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.79
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.79
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.79
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.78
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.7
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.63
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.62
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.61
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.58
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.57
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.57
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.54
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.49
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.47
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.45
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.45
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.44
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.42
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.37
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.28
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.52
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.41
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.17
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.92
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.36
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.18

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=8e-33  Score=237.17  Aligned_cols=259  Identities=25%  Similarity=0.369  Sum_probs=217.7

Q ss_pred             cccEEECcCCcccc--ccchhhhCCCCccEEECCC-CcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161            6 ELITLHLENNSLEG--HIHNTFANASHLRSLDLYS-NKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL   82 (333)
Q Consensus         6 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   82 (333)
                      +++.|+|+++.+.+  .+|..++++++|++|+|++ |.++|.+|.+|.++++|++|+|++|++.+..+..+..+.+|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            58999999999987  4788999999999999997 89999999999999999999999999998888889999999999


Q ss_pred             EcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhh
Q 039161           83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQL  162 (333)
Q Consensus        83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (333)
                      ++++|.+.+..+..+  ..++.++.+++++|.+++.+|..+......++.+....+...               +.....
T Consensus       131 ~l~~N~~~~~~p~~l--~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~---------------~~~~~~  193 (313)
T d1ogqa_         131 DFSYNALSGTLPPSI--SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT---------------GKIPPT  193 (313)
T ss_dssp             ECCSSEEESCCCGGG--GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE---------------EECCGG
T ss_pred             ccccccccccCchhh--ccCcccceeecccccccccccccccccccccccccccccccc---------------cccccc
Confidence            999999998887776  789999999999999999888764433222244444332110               000111


Q ss_pred             hhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccc
Q 039161          163 QNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALA  242 (333)
Q Consensus       163 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  242 (333)
                      .. ......++++.+...+.+|..+..+++++.+++++|.+.+.++ .++.+++|+.|+|++|++++.+|..+..+++|+
T Consensus       194 ~~-~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~  271 (313)
T d1ogqa_         194 FA-NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH  271 (313)
T ss_dssp             GG-GCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred             cc-ccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCC
Confidence            11 2244579999999998999999999999999999999997655 688889999999999999999999999999999


Q ss_pred             eeecccCcceecCCCCCccCCccccccccccCCCCCCCCCCC
Q 039161          243 LLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRC  284 (333)
Q Consensus       243 ~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C  284 (333)
                      +|+|++|+++|.+|....+..++...+.+|..+||.|++ .|
T Consensus       272 ~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         272 SLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             EEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             EEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence            999999999999998877788888888899889998875 45

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.6e-27  Score=199.70  Aligned_cols=210  Identities=21%  Similarity=0.201  Sum_probs=141.6

Q ss_pred             CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEcc-CCcCCCcccccccCCCCCCE
Q 039161            3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVE-NNMISDSFPCWMGSLSELKI   81 (333)
Q Consensus         3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~   81 (333)
                      +|+.+++|+|++|+|+...+.+|.++++|++|++++|++....+..+..+..++.++.. .+.++...+..|..+++|++
T Consensus        30 ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~  109 (284)
T d1ozna_          30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (284)
T ss_dssp             CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCE
Confidence            45566777777777776666667777777777777777776666666666666666543 44555555666667777777


Q ss_pred             EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchh
Q 039161           82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQ  161 (333)
Q Consensus        82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (333)
                      |++++|.+.......+  ...++|+.+++++|.+++ ++...+..                                   
T Consensus       110 L~l~~n~~~~~~~~~~--~~~~~L~~l~l~~N~l~~-i~~~~f~~-----------------------------------  151 (284)
T d1ozna_         110 LHLDRCGLQELGPGLF--RGLAALQYLYLQDNALQA-LPDDTFRD-----------------------------------  151 (284)
T ss_dssp             EECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCCC-CCTTTTTT-----------------------------------
T ss_pred             EecCCccccccccccc--chhcccchhhhccccccc-cChhHhcc-----------------------------------
Confidence            7777777665555444  556667777777777663 33222221                                   


Q ss_pred             hhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCcc
Q 039161          162 LQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTAL  241 (333)
Q Consensus       162 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  241 (333)
                          .+.|+.|++++|++++..+.+|..+++|+.+++++|++++..|..|..+++|++|++++|.+.+..+..+..+++|
T Consensus       152 ----~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L  227 (284)
T d1ozna_         152 ----LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL  227 (284)
T ss_dssp             ----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred             ----ccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccccccccccc
Confidence                4556777777777776666777777777777777777777777777777777777777777776666677777777


Q ss_pred             ceeecccCcceec
Q 039161          242 ALLNLSYNRLWGR  254 (333)
Q Consensus       242 ~~L~l~~N~l~~~  254 (333)
                      +.+++++|++.+.
T Consensus       228 ~~L~l~~N~l~C~  240 (284)
T d1ozna_         228 QYLRLNDNPWVCD  240 (284)
T ss_dssp             CEEECCSSCEECS
T ss_pred             CEEEecCCCCCCC
Confidence            7777777777643

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=2.2e-28  Score=209.23  Aligned_cols=234  Identities=24%  Similarity=0.356  Sum_probs=191.6

Q ss_pred             CCCcCcccEEECcC-CccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCC
Q 039161            1 GSFSTELITLHLEN-NSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSEL   79 (333)
Q Consensus         1 g~l~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   79 (333)
                      |+++ +|++|+|++ |++.|.+|..|+++++|++|+|++|++.+..+..+..+.+|+.++++.|.+.+.+|..+..++++
T Consensus        73 ~~L~-~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L  151 (313)
T d1ogqa_          73 ANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL  151 (313)
T ss_dssp             GGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred             hcCc-cccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCccc
Confidence            3566 899999987 88999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEcccCcCCCCCCCCCCcccCCcc-cEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCc
Q 039161           80 KILVLRSNQFDCPPCNSNITFPFQAL-RIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGH  158 (333)
Q Consensus        80 ~~L~L~~n~l~~~~~~~~~~~~l~~L-~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~  158 (333)
                      +++++++|.+.+..+..+  ..+..+ +.++++.|++++..|.. +..+... .+++..+.               ..+.
T Consensus       152 ~~l~l~~n~l~~~ip~~~--~~l~~l~~~l~~~~n~l~~~~~~~-~~~l~~~-~l~l~~~~---------------~~~~  212 (313)
T d1ogqa_         152 VGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPT-FANLNLA-FVDLSRNM---------------LEGD  212 (313)
T ss_dssp             CEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGG-GGGCCCS-EEECCSSE---------------EEEC
T ss_pred             ceeecccccccccccccc--cccccccccccccccccccccccc-ccccccc-cccccccc---------------cccc
Confidence            999999999988777655  555554 89999999999877654 2222211 12222111               0111


Q ss_pred             chhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCcccc
Q 039161          159 DFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSV  238 (333)
Q Consensus       159 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  238 (333)
                      ........+.++.+++++|.+.+.+| .+..+++|+.|+|++|++++.+|..++++++|++|+|++|+++|.+|. +..+
T Consensus       213 ~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L  290 (313)
T d1ogqa_         213 ASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNL  290 (313)
T ss_dssp             CGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTG
T ss_pred             cccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccC
Confidence            12222336889999999999996655 588899999999999999999999999999999999999999998885 5788


Q ss_pred             CccceeecccCc-ceec-CC
Q 039161          239 TALALLNLSYNR-LWGR-IP  256 (333)
Q Consensus       239 ~~L~~L~l~~N~-l~~~-~p  256 (333)
                      ++|+.+++++|+ +.|. +|
T Consensus       291 ~~L~~l~l~~N~~l~g~plp  310 (313)
T d1ogqa_         291 QRFDVSAYANNKCLCGSPLP  310 (313)
T ss_dssp             GGSCGGGTCSSSEEESTTSS
T ss_pred             CCCCHHHhCCCccccCCCCC
Confidence            999999999997 5543 44

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.2e-26  Score=193.99  Aligned_cols=228  Identities=16%  Similarity=0.189  Sum_probs=190.9

Q ss_pred             EEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc-cC
Q 039161            9 TLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR-SN   87 (333)
Q Consensus         9 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n   87 (333)
                      +++.++++++ .+|..+.  +.+++|+|++|+|++..+.+|.++++|++|++++|.+....+..+..+..++.+... .+
T Consensus        15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            4577888888 5555443  578999999999997777889999999999999999998888888888999998875 56


Q ss_pred             cCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhh
Q 039161           88 QFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFV  167 (333)
Q Consensus        88 ~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (333)
                      .++...+..+  ..+++|++|++++|.+....+.. +..                                       ..
T Consensus        92 ~~~~l~~~~~--~~l~~L~~L~l~~n~~~~~~~~~-~~~---------------------------------------~~  129 (284)
T d1ozna_          92 QLRSVDPATF--HGLGRLHTLHLDRCGLQELGPGL-FRG---------------------------------------LA  129 (284)
T ss_dssp             TCCCCCTTTT--TTCTTCCEEECTTSCCCCCCTTT-TTT---------------------------------------CT
T ss_pred             ccccccchhh--cccccCCEEecCCcccccccccc-cch---------------------------------------hc
Confidence            6777777776  78899999999999887432221 211                                       56


Q ss_pred             ccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecc
Q 039161          168 MFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLS  247 (333)
Q Consensus       168 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~  247 (333)
                      +|+.+++++|++++..+.+|..+++|+.|++++|++++..+.+|.++++|+.+++++|.+++..|..|..+++|+.|+++
T Consensus       130 ~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~  209 (284)
T d1ozna_         130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF  209 (284)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             ccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccc
Confidence            78999999999997778889999999999999999998889999999999999999999998889999999999999999


Q ss_pred             cCcceecCCCCCccCCccccccccccCCCCCCCCCCCCC
Q 039161          248 YNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSN  286 (333)
Q Consensus       248 ~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C~~  286 (333)
                      +|.+++..|.     .|........+.+.|||+.|+|+.
T Consensus       210 ~N~i~~~~~~-----~~~~~~~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         210 ANNLSALPTE-----ALAPLRALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             SSCCSCCCHH-----HHTTCTTCCEEECCSSCEECSGGG
T ss_pred             cccccccccc-----ccccccccCEEEecCCCCCCCccc
Confidence            9999854443     344445556778999999999973

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=9.1e-26  Score=192.16  Aligned_cols=255  Identities=19%  Similarity=0.239  Sum_probs=169.8

Q ss_pred             CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161            3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL   82 (333)
Q Consensus         3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   82 (333)
                      +|+++++|+|++|+|+...+.+|.++++|++|++++|.++...|.+|.++++|++|++++|+++. +|..+  ...++.|
T Consensus        29 l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~~--~~~l~~L  105 (305)
T d1xkua_          29 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQEL  105 (305)
T ss_dssp             CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSC--CTTCCEE
T ss_pred             CCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc-Cccch--hhhhhhh
Confidence            44566777777777765555566667777777777777666556666667777777777776663 33322  2456666


Q ss_pred             EcccCcCCCCCCCCCCcccCCcccEEEcCCCccccc-CCcccccChHHhhhhcccCcccccccccccCceEEeecCcchh
Q 039161           83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGF-LPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQ  161 (333)
Q Consensus        83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (333)
                      ++.+|.+.......+  .....++.++...|..... .....+..++.|+.+++.++...               ..   
T Consensus       106 ~~~~n~l~~l~~~~~--~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~---------------~l---  165 (305)
T d1xkua_         106 RVHENEITKVRKSVF--NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---------------TI---  165 (305)
T ss_dssp             ECCSSCCCBBCHHHH--TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC---------------SC---
T ss_pred             hccccchhhhhhhhh--hccccccccccccccccccCCCccccccccccCccccccCCcc---------------cc---
Confidence            666666655443322  3344555566655543211 11122444444444444332100               00   


Q ss_pred             hhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCcc
Q 039161          162 LQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTAL  241 (333)
Q Consensus       162 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  241 (333)
                      ....+++|+.|++++|..++..+..+..++.+++|++++|.+.+..+..+.++++|++|+|++|.++ .+|..+..+++|
T Consensus       166 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L  244 (305)
T d1xkua_         166 PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI  244 (305)
T ss_dssp             CSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred             CcccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCC
Confidence            0112678999999999999888899999999999999999999888999999999999999999999 668889999999


Q ss_pred             ceeecccCcceecCCCCCc--cCCccccccccccCCCCCCCCC
Q 039161          242 ALLNLSYNRLWGRIPRGNQ--FNTFQNDSYIGNIRLCGEPLTV  282 (333)
Q Consensus       242 ~~L~l~~N~l~~~~p~~~~--~~~~~~~~~~~~~~l~g~~~~~  282 (333)
                      +.|++++|+|+ .++....  ...+..........+.|||+..
T Consensus       245 ~~L~Ls~N~i~-~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         245 QVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             CEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             CEEECCCCccC-ccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence            99999999998 5554311  1122233334566788999864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1e-25  Score=187.92  Aligned_cols=198  Identities=20%  Similarity=0.243  Sum_probs=160.0

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      .+.+.+.+++.++. +|..+.  +++++|+|++|++++..+.+|.++++|++|+|++|.|+. ++ .+..+++|++|+++
T Consensus        11 ~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          11 SHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLS   85 (266)
T ss_dssp             TCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECC
T ss_pred             CCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccccc
Confidence            35566888888884 455443  578999999999987777789999999999999999984 33 45788999999999


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI  165 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (333)
                      +|+++.... .+  ..+++|+.|++++|.+....+ ..+..                                       
T Consensus        86 ~N~l~~~~~-~~--~~l~~L~~L~l~~~~~~~~~~-~~~~~---------------------------------------  122 (266)
T d1p9ag_          86 HNQLQSLPL-LG--QTLPALTVLDVSFNRLTSLPL-GALRG---------------------------------------  122 (266)
T ss_dssp             SSCCSSCCC-CT--TTCTTCCEEECCSSCCCCCCS-STTTT---------------------------------------
T ss_pred             ccccccccc-cc--ccccccccccccccccceeec-ccccc---------------------------------------
Confidence            999887644 23  678899999999988774322 21211                                       


Q ss_pred             hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161          166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN  245 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  245 (333)
                      +..+++|++++|.++...+..+..+++++.+++++|++++..+..|..+++|++|+|++|+|+ .+|..+..+++|+.|+
T Consensus       123 l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~  201 (266)
T d1p9ag_         123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAF  201 (266)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEE
T ss_pred             ccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEE
Confidence            567888999999998777778888899999999999999888888899999999999999998 7787777888999999


Q ss_pred             cccCcce
Q 039161          246 LSYNRLW  252 (333)
Q Consensus       246 l~~N~l~  252 (333)
                      |++|++.
T Consensus       202 L~~Np~~  208 (266)
T d1p9ag_         202 LHGNPWL  208 (266)
T ss_dssp             CCSCCBC
T ss_pred             ecCCCCC
Confidence            9999886

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.4e-24  Score=180.99  Aligned_cols=207  Identities=21%  Similarity=0.254  Sum_probs=169.2

Q ss_pred             hhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCc
Q 039161           25 FANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQA  104 (333)
Q Consensus        25 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~  104 (333)
                      +.....+.+.+.+++.++ .+|..+.  +++++|+|++|.|++..+.+|..+++|++|+|++|+++..+..    ..+++
T Consensus         6 ~~~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~----~~l~~   78 (266)
T d1p9ag_           6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD----GTLPV   78 (266)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC----SCCTT
T ss_pred             EcccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccccc----ccccc
Confidence            345667788899999998 5676554  4799999999999976677899999999999999999876532    56889


Q ss_pred             ccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCccch
Q 039161          105 LRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEIS  184 (333)
Q Consensus       105 L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~  184 (333)
                      |++|++++|+++.. +.. +..                                       ++.|+.|++++|.+....+
T Consensus        79 L~~L~Ls~N~l~~~-~~~-~~~---------------------------------------l~~L~~L~l~~~~~~~~~~  117 (266)
T d1p9ag_          79 LGTLDLSHNQLQSL-PLL-GQT---------------------------------------LPALTVLDVSFNRLTSLPL  117 (266)
T ss_dssp             CCEEECCSSCCSSC-CCC-TTT---------------------------------------CTTCCEEECCSSCCCCCCS
T ss_pred             cccccccccccccc-ccc-ccc---------------------------------------ccccccccccccccceeec
Confidence            99999999998743 222 111                                       5778899999999987777


Q ss_pred             hhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCc
Q 039161          185 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTF  264 (333)
Q Consensus       185 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~  264 (333)
                      ..+..+.+++.|++++|.++...+..+..+++++.+++++|++++..+..+..+++|+.|+|++|+|+ .+|.+..    
T Consensus       118 ~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~----  192 (266)
T d1p9ag_         118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF----  192 (266)
T ss_dssp             STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT----
T ss_pred             cccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHC----
Confidence            88888999999999999999888888888999999999999999888888999999999999999998 7876522    


Q ss_pred             cccccccccCCCCCCCCCCCC
Q 039161          265 QNDSYIGNIRLCGEPLTVRCS  285 (333)
Q Consensus       265 ~~~~~~~~~~l~g~~~~~~C~  285 (333)
                       .......+.+.||||.|+|.
T Consensus       193 -~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         193 -GSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             -TTCCCSEEECCSCCBCCSGG
T ss_pred             -CCCCCCEEEecCCCCCCCcc
Confidence             23334567899999999995

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=6.9e-22  Score=167.89  Aligned_cols=245  Identities=22%  Similarity=0.256  Sum_probs=183.7

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      ..++++=++++++. +|..+.  +++++|+|++|+|+...+.+|.++++|++|++++|.+....|..|..+++|++|+++
T Consensus        11 ~~~~~~C~~~~L~~-lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCCc-cCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            35677778888884 454453  689999999999997666789999999999999999998778899999999999999


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI  165 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (333)
                      +|+++..+..     ....++.|+++.|.+.+ ++...+........+....+....             ..........
T Consensus        88 ~n~l~~l~~~-----~~~~l~~L~~~~n~l~~-l~~~~~~~~~~~~~l~~~~n~~~~-------------~~~~~~~~~~  148 (305)
T d1xkua_          88 KNQLKELPEK-----MPKTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKS-------------SGIENGAFQG  148 (305)
T ss_dssp             SSCCSBCCSS-----CCTTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCG-------------GGBCTTGGGG
T ss_pred             CCccCcCccc-----hhhhhhhhhccccchhh-hhhhhhhccccccccccccccccc-------------cCCCcccccc
Confidence            9999877643     24678999999998884 333333333333333322221100             0111112233


Q ss_pred             hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161          166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN  245 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  245 (333)
                      +++|+.+++++|.++ .+|..  .+++|+.|++++|..++..+..|.+++.++.|++++|.+.+..+..+..+++|++|+
T Consensus       149 l~~L~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~  225 (305)
T d1xkua_         149 MKKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH  225 (305)
T ss_dssp             CTTCCEEECCSSCCC-SCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred             ccccCccccccCCcc-ccCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeee
Confidence            678999999999988 45543  367999999999999989999999999999999999999988889999999999999


Q ss_pred             cccCcceecCCCCCccCCccccccccccCCCCCCCC
Q 039161          246 LSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLT  281 (333)
Q Consensus       246 l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~  281 (333)
                      +++|+|+ .+|..     +........+.+.+|.++
T Consensus       226 L~~N~L~-~lp~~-----l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         226 LNNNKLV-KVPGG-----LADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             CCSSCCS-SCCTT-----TTTCSSCCEEECCSSCCC
T ss_pred             ccccccc-ccccc-----cccccCCCEEECCCCccC
Confidence            9999998 66653     222333344455555554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.87  E-value=3e-21  Score=169.04  Aligned_cols=236  Identities=17%  Similarity=0.236  Sum_probs=148.9

Q ss_pred             CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcc-------------
Q 039161            3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSF-------------   69 (333)
Q Consensus         3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-------------   69 (333)
                      ++ +|++|++++|++++..+  |+++++|++|++++|.+++. + .+.++++|+.|++++|.+++..             
T Consensus        65 L~-nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i-~-~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~  139 (384)
T d2omza2          65 LN-NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL  139 (384)
T ss_dssp             CT-TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEE
T ss_pred             CC-CCCEEeCcCCcCCCCcc--ccCCcccccccccccccccc-c-ccccccccccccccccccccccccccccccccccc
Confidence            44 67888888888775543  77788888888888887743 2 2677777888777766554210             


Q ss_pred             --------------------------------------------------cccccCCCCCCEEEcccCcCCCCCCCCCCc
Q 039161           70 --------------------------------------------------PCWMGSLSELKILVLRSNQFDCPPCNSNIT   99 (333)
Q Consensus        70 --------------------------------------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   99 (333)
                                                                        ...+..+++++.+++++|.+++..+.    
T Consensus       140 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~----  215 (384)
T d2omza2         140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL----  215 (384)
T ss_dssp             EEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGG----
T ss_pred             ccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCcc----
Confidence                                                              01233456788888888887766532    


Q ss_pred             ccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc-cccccc-cc--CceEEeecCc-chhhhhhhhccceEEc
Q 039161          100 FPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGRAF-CD--ESITVAMKGH-DFQLQNIFVMFRAMDF  174 (333)
Q Consensus       100 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~~-~~--~~~~~~~~~~-~~~~~~~~~~L~~L~l  174 (333)
                      ...++|++|++++|.++. ++  .+..+++++.+++..+.. .+.... ..  ....+..... .......++.++.+++
T Consensus       216 ~~~~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~  292 (384)
T d2omza2         216 GILTNLDELSLNGNQLKD-IG--TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLEL  292 (384)
T ss_dssp             GGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred             cccCCCCEEECCCCCCCC-cc--hhhcccccchhccccCccCCCCcccccccCCEeeccCcccCCCCccccccccccccc
Confidence            446678888888887764 22  145556666666655431 111100 00  1111110100 0111223567788888


Q ss_pred             cCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceec
Q 039161          175 SSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGR  254 (333)
Q Consensus       175 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  254 (333)
                      +.|.+++.  ..+..+++++.|++++|++++..  .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|++++.
T Consensus       293 ~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l  366 (384)
T d2omza2         293 NENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDL  366 (384)
T ss_dssp             CSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBC
T ss_pred             cccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCC
Confidence            88887742  23677888888888888888653  37778888888888888874 33 577888888888888888754


Q ss_pred             CC
Q 039161          255 IP  256 (333)
Q Consensus       255 ~p  256 (333)
                      .|
T Consensus       367 ~~  368 (384)
T d2omza2         367 TP  368 (384)
T ss_dssp             GG
T ss_pred             hh
Confidence            43

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.86  E-value=2.9e-20  Score=162.69  Aligned_cols=254  Identities=17%  Similarity=0.227  Sum_probs=158.7

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      +|++|+++++.++..  +.+..+++|++|++++|++++. + .+.++++|++|++++|++.+..  .+..+++|+.|+++
T Consensus        45 ~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~~  118 (384)
T d2omza2          45 QVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLF  118 (384)
T ss_dssp             TCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECC
T ss_pred             CCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCC-c-cccCCccccccccccccccccc--cccccccccccccc
Confidence            699999999999854  4578899999999999999954 4 3899999999999999998643  38899999999999


Q ss_pred             cCcCCCCCCCC-------------------------------------------------------------CCcccCCc
Q 039161           86 SNQFDCPPCNS-------------------------------------------------------------NITFPFQA  104 (333)
Q Consensus        86 ~n~l~~~~~~~-------------------------------------------------------------~~~~~l~~  104 (333)
                      ++.+++.....                                                             .....+++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  198 (384)
T d2omza2         119 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN  198 (384)
T ss_dssp             SSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccc
Confidence            88775432111                                                             01123466


Q ss_pred             ccEEEcCCCcccccCCcccccChHHhhhhcccCccc-ccccccc-cCceEEeecC---cchhhhhhhhccceEEccCccc
Q 039161          105 LRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGRAFC-DESITVAMKG---HDFQLQNIFVMFRAMDFSSNRF  179 (333)
Q Consensus       105 L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~L~~L~ls~n~l  179 (333)
                      ++.+++++|.+++..|   .....+++.+++.++.. .++.... ..........   ........++.|++|+++++++
T Consensus       199 ~~~l~l~~n~i~~~~~---~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l  275 (384)
T d2omza2         199 LESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI  275 (384)
T ss_dssp             CSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCC
T ss_pred             cceeeccCCccCCCCc---ccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCCcccccccCCEeeccCccc
Confidence            7777777777775544   23344566666554421 1110000 0000000000   0000112234455555555555


Q ss_pred             CccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCCCC
Q 039161          180 HGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGN  259 (333)
Q Consensus       180 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~  259 (333)
                      ++..+  +..++.++.++++.|.+++.  ..+..++++++|++++|.+++..  .+..+++|+.|++++|++++ +|   
T Consensus       276 ~~~~~--~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~---  345 (384)
T d2omza2         276 SNISP--LAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS---  345 (384)
T ss_dssp             CCCGG--GTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG---
T ss_pred             CCCCc--cccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch---
Confidence            42211  34445555555555555532  34677889999999999999653  37889999999999999973 33   


Q ss_pred             ccCCccccccccccCCCCCCCC
Q 039161          260 QFNTFQNDSYIGNIRLCGEPLT  281 (333)
Q Consensus       260 ~~~~~~~~~~~~~~~l~g~~~~  281 (333)
                         .+........+++.+|.++
T Consensus       346 ---~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         346 ---SLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             ---GGGGCTTCCEEECCSSCCC
T ss_pred             ---hHcCCCCCCEEECCCCcCC
Confidence               2333334445566666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=5.9e-21  Score=156.53  Aligned_cols=220  Identities=12%  Similarity=0.073  Sum_probs=114.6

Q ss_pred             cEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcc-cccccCCCCCCEEEccc
Q 039161            8 ITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSF-PCWMGSLSELKILVLRS   86 (333)
Q Consensus         8 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~   86 (333)
                      ++++.+++.++ .+|..+.  +++++|++++|+++...+.+|.++++|++|++++|.+...+ +.+|..+++++++.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            34555555555 3332221  34566666666665444445566666666666666554332 23455556666665543


Q ss_pred             -CcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCc-ccccccccccCceEEeecCcchhhhh
Q 039161           87 -NQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGR-LEYMGRAFCDESITVAMKGHDFQLQN  164 (333)
Q Consensus        87 -n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (333)
                       |.+....+..+  ..+++|+.+++++|.+....+......+..+......++ ...+...               .+..
T Consensus        88 ~n~l~~~~~~~~--~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~---------------~~~~  150 (242)
T d1xwdc1          88 ANNLLYINPEAF--QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN---------------SFVG  150 (242)
T ss_dssp             CTTCCEECTTSE--ECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTT---------------SSTT
T ss_pred             cccccccccccc--cccccccccccchhhhccccccccccccccccccccccccccccccc---------------cccc
Confidence             44444444433  455566666666665542222111111111111111110 0000000               0011


Q ss_pred             hhhccceEEccCcccCccchhhhhCCCCCCEE-EccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccce
Q 039161          165 IFVMFRAMDFSSNRFHGEISEVLGNFKSLKVL-NLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALAL  243 (333)
Q Consensus       165 ~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  243 (333)
                      ....++.|++++|+++...+..+ ..+++..+ ++++|+++...+..|.++++|++|++++|+++...+..|.++++|+.
T Consensus       151 ~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  229 (242)
T d1xwdc1         151 LSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA  229 (242)
T ss_dssp             SBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEES
T ss_pred             ccccceeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCccccc
Confidence            13466778888888874444444 34444444 46777787555566788888888888888888555566777777777


Q ss_pred             eeccc
Q 039161          244 LNLSY  248 (333)
Q Consensus       244 L~l~~  248 (333)
                      +++.+
T Consensus       230 l~~~~  234 (242)
T d1xwdc1         230 RSTYN  234 (242)
T ss_dssp             SSEES
T ss_pred             CcCCC
Confidence            76654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=1.1e-19  Score=147.45  Aligned_cols=203  Identities=14%  Similarity=0.240  Sum_probs=127.5

Q ss_pred             EECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcC
Q 039161           10 LHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQF   89 (333)
Q Consensus        10 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   89 (333)
                      ++++.+.+++..  .++.+.+|++|++.+|.++. ++ .+..+++|++|++++|.+++..+  +..+++++++++++|.+
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~   97 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL   97 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--ccccccccccccccccc
Confidence            456666666543  34566778888888888774 33 47778888888888888775433  67778888888887777


Q ss_pred             CCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhcc
Q 039161           90 DCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMF  169 (333)
Q Consensus        90 ~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  169 (333)
                      +...  .+  ..+++|+.++++.+...+..+   +.....+..+.+..+..                 ........+++|
T Consensus        98 ~~i~--~l--~~l~~L~~l~l~~~~~~~~~~---~~~~~~~~~l~~~~~~~-----------------~~~~~~~~~~~L  153 (227)
T d1h6ua2          98 KNVS--AI--AGLQSIKTLDLTSTQITDVTP---LAGLSNLQVLYLDLNQI-----------------TNISPLAGLTNL  153 (227)
T ss_dssp             SCCG--GG--TTCTTCCEEECTTSCCCCCGG---GTTCTTCCEEECCSSCC-----------------CCCGGGGGCTTC
T ss_pred             cccc--cc--cccccccccccccccccccch---hccccchhhhhchhhhh-----------------chhhhhcccccc
Confidence            6543  12  557778888887776654322   22222222222211100                 000011225677


Q ss_pred             ceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeeccc
Q 039161          170 RAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSY  248 (333)
Q Consensus       170 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~  248 (333)
                      ++|++++|.+.+..  .++++++|++|++++|++++. + .+.++++|++|+|++|++++..  .+..+++|+.|++++
T Consensus       154 ~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         154 QYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             ccccccccccccch--hhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence            88888888776332  267778888888888887753 2 3677788888888888877433  267778888887764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=5.7e-19  Score=141.16  Aligned_cols=180  Identities=16%  Similarity=0.264  Sum_probs=136.8

Q ss_pred             ECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCC
Q 039161           11 HLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFD   90 (333)
Q Consensus        11 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   90 (333)
                      .++.+.+++..+.  ..+..|++|++++|.++.. + .+..+++|++|++++|++++..  .+..+++|++|++++|+++
T Consensus        30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~  103 (210)
T d1h6ta2          30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK  103 (210)
T ss_dssp             HTTCSCTTSEECH--HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             HhCcCccCCccCH--HHhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc
Confidence            4556666655443  3467889999999998843 3 3778899999999999988643  3678899999999999888


Q ss_pred             CCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccc
Q 039161           91 CPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFR  170 (333)
Q Consensus        91 ~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  170 (333)
                      +.+.  +  ..+++|+.|++++|.+.. ++.  +.                                       .++.++
T Consensus       104 ~l~~--l--~~l~~L~~L~l~~~~~~~-~~~--l~---------------------------------------~l~~l~  137 (210)
T d1h6ta2         104 DLSS--L--KDLKKLKSLSLEHNGISD-ING--LV---------------------------------------HLPQLE  137 (210)
T ss_dssp             CGGG--G--TTCTTCCEEECTTSCCCC-CGG--GG---------------------------------------GCTTCC
T ss_pred             cccc--c--cccccccccccccccccc-ccc--cc---------------------------------------cccccc
Confidence            6542  2  668889999999887652 211  11                                       156788


Q ss_pred             eEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeeccc
Q 039161          171 AMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSY  248 (333)
Q Consensus       171 ~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~  248 (333)
                      .+++++|.+++.  ..+..+++|+.+++++|++++..  .+.++++|++|++++|.+++ ++ .+..+++|+.|++++
T Consensus       138 ~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         138 SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             cccccccccccc--ccccccccccccccccccccccc--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            899999988742  34678899999999999998543  37889999999999999984 44 588899999999875

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=1.9e-18  Score=136.84  Aligned_cols=177  Identities=24%  Similarity=0.330  Sum_probs=124.3

Q ss_pred             EECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcC
Q 039161           10 LHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQF   89 (333)
Q Consensus        10 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   89 (333)
                      ..++.+.+++...  ...++++++|++++|.++. ++ .+..+++|++|++++|++++..+  +..+++|++|++++|.+
T Consensus        23 ~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~   96 (199)
T d2omxa2          23 TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI   96 (199)
T ss_dssp             HHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             HHhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-cc-ccccCCCcCcCccccccccCccc--ccCCccccccccccccc
Confidence            4566666665443  2456788888888888874 33 47778888888888888885433  77888888888888877


Q ss_pred             CCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhcc
Q 039161           90 DCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMF  169 (333)
Q Consensus        90 ~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  169 (333)
                      ....+  +  ..+++|+.+++++|......+   +.                                       .+++|
T Consensus        97 ~~~~~--l--~~l~~L~~L~l~~~~~~~~~~---~~---------------------------------------~l~~L  130 (199)
T d2omxa2          97 ADITP--L--ANLTNLTGLTLFNNQITDIDP---LK---------------------------------------NLTNL  130 (199)
T ss_dssp             CCCGG--G--TTCTTCSEEECCSSCCCCCGG---GT---------------------------------------TCTTC
T ss_pred             ccccc--c--ccccccccccccccccccccc---cc---------------------------------------hhhhh
Confidence            66542  2  567888888888777663211   11                                       15677


Q ss_pred             ceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCcccee
Q 039161          170 RAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL  244 (333)
Q Consensus       170 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  244 (333)
                      +.|++++|++. .++ .+..+++|+.|++++|++++..  .++++++|++|++++|++++ ++ .+..+++|+.|
T Consensus       131 ~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         131 NRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             SEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             HHhhhhhhhhc-ccc-cccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            88888888876 333 4677888888888888887542  37778888888888888874 33 46667776654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.79  E-value=1.8e-19  Score=142.09  Aligned_cols=172  Identities=15%  Similarity=0.189  Sum_probs=110.5

Q ss_pred             ccEEECcCCccccccchhhhCCCCccEEECCCCcCcC-CCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            7 LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEG-PLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         7 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      .++++.++++++. +|..+.  +++++|+|++|+|++ ..+..|.++++|++|+|++|.+....+..|..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcCc-cCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            4567777887773 444332  567888888888865 335566778888888888888877777777778888888888


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI  165 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (333)
                      +|+++.+++.+|  ..+++|++|+|++|++++ ++...|..                                       
T Consensus        87 ~N~l~~l~~~~F--~~l~~L~~L~L~~N~l~~-i~~~~f~~---------------------------------------  124 (192)
T d1w8aa_          87 ENKIKEISNKMF--LGLHQLKTLNLYDNQISC-VMPGSFEH---------------------------------------  124 (192)
T ss_dssp             SCCCCEECSSSS--TTCTTCCEEECCSSCCCE-ECTTSSTT---------------------------------------
T ss_pred             cccccccCHHHH--hCCCcccccccCCccccc-cCHHHhcC---------------------------------------
Confidence            888887777766  677888888888888774 33333332                                       


Q ss_pred             hhccceEEccCcccCccchh-hhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCC
Q 039161          166 FVMFRAMDFSSNRFHGEISE-VLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD  228 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  228 (333)
                      +++|++|++++|.+...... ++.  ..++.+.+..+.++...|..+   ..++.++|+.|.+.
T Consensus       125 l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~~p~~l---~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         125 LNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFK  183 (192)
T ss_dssp             CTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTTCC
T ss_pred             CcccccccccccccccccchHHHh--hhhhhhcccCCCeEeCCChhh---cCCEeeecCHhhCc
Confidence            45566666766666532211 111  123444555566555444433   44555667777665

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=1.6e-18  Score=138.48  Aligned_cols=163  Identities=18%  Similarity=0.261  Sum_probs=134.2

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      +++.|++++|.++...  .+..+++|++|++++|++++ ++ .+..+++|++|++++|++++ ++ .+..+++|+.|+++
T Consensus        47 ~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred             CccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccccc-cc-cccccccccccccc
Confidence            6899999999998553  37889999999999999996 44 36889999999999999985 44 58889999999999


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI  165 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (333)
                      +|.+....  .+  ..++.++.++++.|.+++...   .                                       ..
T Consensus       121 ~~~~~~~~--~l--~~l~~l~~l~~~~n~l~~~~~---~---------------------------------------~~  154 (210)
T d1h6ta2         121 HNGISDIN--GL--VHLPQLESLYLGNNKITDITV---L---------------------------------------SR  154 (210)
T ss_dssp             TSCCCCCG--GG--GGCTTCCEEECCSSCCCCCGG---G---------------------------------------GG
T ss_pred             cccccccc--cc--ccccccccccccccccccccc---c---------------------------------------cc
Confidence            99887543  22  678899999999998874211   1                                       11


Q ss_pred             hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCC
Q 039161          166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSF  224 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  224 (333)
                      +++|+++++++|++++. +. +..+++|++|++++|+++. ++ .+.++++|++|+|++
T Consensus       155 l~~L~~l~l~~n~l~~i-~~-l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         155 LTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CTTCSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             ccccccccccccccccc-cc-ccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            67899999999999854 33 7899999999999999985 44 588999999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.3e-18  Score=142.40  Aligned_cols=205  Identities=11%  Similarity=0.069  Sum_probs=148.9

Q ss_pred             ccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCC-CCCCCcccCCcccEEE
Q 039161           31 LRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPP-CNSNITFPFQALRIID  109 (333)
Q Consensus        31 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~l~~L~~L~  109 (333)
                      .+.++.++..++ .+|..+.  +++++|++++|.++...+.+|.++++|++|++++|.+.... +..+  ..++.++++.
T Consensus        10 ~~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f--~~l~~l~~l~   84 (242)
T d1xwdc1          10 NRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF--SNLPKLHEIR   84 (242)
T ss_dssp             SSEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSE--ESCTTCCEEE
T ss_pred             CCEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccc--cccccccccc
Confidence            367888888888 6776553  48999999999999666668999999999999999887643 3344  6788999998


Q ss_pred             cCC-CcccccCCcccccChHHhhhhcccCccc-ccccccccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhh
Q 039161          110 LSH-TEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVL  187 (333)
Q Consensus       110 ls~-n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~  187 (333)
                      +.. |.+. ..+...+..+++|+.+.+..+.. ......               .......+..+...++.+....+..+
T Consensus        85 ~~~~n~l~-~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~---------------~~~~l~~l~~~~~~n~~l~~i~~~~~  148 (242)
T d1xwdc1          85 IEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVH---------------KIHSLQKVLLDIQDNINIHTIERNSF  148 (242)
T ss_dssp             EECCTTCC-EECTTSEECCTTCCEEEEESCCCCSCCCCT---------------TTCBSSCEEEEEESCTTCCEECTTSS
T ss_pred             cccccccc-ccccccccccccccccccchhhhccccccc---------------cccccccccccccccccccccccccc
Confidence            865 5666 44445588889999988876531 111100               11113455556666777775556666


Q ss_pred             hCCC-CCCEEEccCCcCCCCCccccccCCCCcE-EeCCCCcCCCCCCCCccccCccceeecccCcceecCCCC
Q 039161          188 GNFK-SLKVLNLSHNSLTGNIPVSFENMTALES-LDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG  258 (333)
Q Consensus       188 ~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~-L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~  258 (333)
                      ..++ .++.+++++|+++...+..+.. .++.. +++++|.++...+..|..+++|+.|++++|+++ .+|..
T Consensus       149 ~~~~~~l~~L~l~~n~l~~i~~~~~~~-~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~  219 (242)
T d1xwdc1         149 VGLSFESVILWLNKNGIQEIHNCAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY  219 (242)
T ss_dssp             TTSBSSCEEEECCSSCCCEECTTTTTT-CCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSS
T ss_pred             ccccccceeeecccccccccccccccc-hhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCHH
Confidence            6654 7889999999999665555544 55544 567888999666667899999999999999998 66654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=3.5e-19  Score=140.38  Aligned_cols=156  Identities=21%  Similarity=0.256  Sum_probs=94.1

Q ss_pred             cEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCc-ccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEc
Q 039161           32 RSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDS-FPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDL  110 (333)
Q Consensus        32 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l  110 (333)
                      +.++.++++++ .+|..+.  +++++|+|++|+|+.. .+..|..+++|++|++++|.+....+..+  ..+++|+    
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~--~~~~~L~----   81 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF--EGASHIQ----   81 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT--TTCTTCC----
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccc--ccccccc----
Confidence            46677777776 4554442  4667777777777643 34455666666666666666665555544  4444444    


Q ss_pred             CCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhhhCC
Q 039161          111 SHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNF  190 (333)
Q Consensus       111 s~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l  190 (333)
                                                                                  +|++++|+++...+.+|.++
T Consensus        82 ------------------------------------------------------------~L~Ls~N~l~~l~~~~F~~l  101 (192)
T d1w8aa_          82 ------------------------------------------------------------ELQLGENKIKEISNKMFLGL  101 (192)
T ss_dssp             ------------------------------------------------------------EEECCSCCCCEECSSSSTTC
T ss_pred             ------------------------------------------------------------eeeeccccccccCHHHHhCC
Confidence                                                                        45555555554555566677


Q ss_pred             CCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCC
Q 039161          191 KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPR  257 (333)
Q Consensus       191 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~  257 (333)
                      ++|++|+|++|+|++..+.+|..+++|++|+|++|.+.... ....-...++...+..+.+++..|.
T Consensus       102 ~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~-~~~~~~~~l~~~~l~~~~~~c~~p~  167 (192)
T d1w8aa_         102 HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC-HLAWFAEWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG-GGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred             CcccccccCCccccccCHHHhcCCccccccccccccccccc-chHHHhhhhhhhcccCCCeEeCCCh
Confidence            77777777777777666777777777777777777776432 1111122355566666777655554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=2.9e-18  Score=138.81  Aligned_cols=192  Identities=14%  Similarity=0.158  Sum_probs=146.7

Q ss_pred             CCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccE
Q 039161           28 ASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRI  107 (333)
Q Consensus        28 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~  107 (333)
                      +.++..++++.+++++..  .+.++.+|++|++.+|.++. + ..+..+++|++|++++|.+++..+  +  ..++++++
T Consensus        18 l~~~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l--~~l~~l~~   89 (227)
T d1h6ua2          18 LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--L--KNLTKITE   89 (227)
T ss_dssp             HHHHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--G--TTCCSCCE
T ss_pred             HHHHHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--c--cccccccc
Confidence            334455678888888644  45678899999999999985 4 358899999999999999987654  2  67899999


Q ss_pred             EEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhh
Q 039161          108 IDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVL  187 (333)
Q Consensus       108 L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~  187 (333)
                      +++++|.++ .++.  +..++.|+.+.+..+...                 ........+.+..++++++.+....  .+
T Consensus        90 l~~~~n~~~-~i~~--l~~l~~L~~l~l~~~~~~-----------------~~~~~~~~~~~~~l~~~~~~~~~~~--~~  147 (227)
T d1h6ua2          90 LELSGNPLK-NVSA--IAGLQSIKTLDLTSTQIT-----------------DVTPLAGLSNLQVLYLDLNQITNIS--PL  147 (227)
T ss_dssp             EECCSCCCS-CCGG--GTTCTTCCEEECTTSCCC-----------------CCGGGTTCTTCCEEECCSSCCCCCG--GG
T ss_pred             ccccccccc-cccc--cccccccccccccccccc-----------------ccchhccccchhhhhchhhhhchhh--hh
Confidence            999999887 3332  556677777666543211                 0011122577888999998887433  36


Q ss_pred             hCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCccee
Q 039161          188 GNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG  253 (333)
Q Consensus       188 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~  253 (333)
                      ..+++|+.|++++|.+....  .++++++|+.|++++|++++ ++ .+..+++|+.|++++|++++
T Consensus       148 ~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~  209 (227)
T d1h6ua2         148 AGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISD  209 (227)
T ss_dssp             GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCB
T ss_pred             ccccccccccccccccccch--hhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCC
Confidence            67899999999999998543  37889999999999999985 33 37889999999999999984

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=8.8e-18  Score=133.00  Aligned_cols=159  Identities=24%  Similarity=0.350  Sum_probs=130.3

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      ++++|++++|.++..  +.+..+++|++|++++|++++..|  +.++++|++|++++|.+.. ++ .+..+++|++|+++
T Consensus        41 ~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~  114 (199)
T d2omxa2          41 QVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLF  114 (199)
T ss_dssp             TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECC
T ss_pred             CCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-cccccccccccccc
Confidence            789999999999854  347889999999999999996433  8999999999999999874 33 48899999999999


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI  165 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (333)
                      +|......+  +  ..+++|+.|++++|.+.. ++.  +..                                       
T Consensus       115 ~~~~~~~~~--~--~~l~~L~~L~l~~n~l~~-~~~--l~~---------------------------------------  148 (199)
T d2omxa2         115 NNQITDIDP--L--KNLTNLNRLELSSNTISD-ISA--LSG---------------------------------------  148 (199)
T ss_dssp             SSCCCCCGG--G--TTCTTCSEEECCSSCCCC-CGG--GTT---------------------------------------
T ss_pred             ccccccccc--c--chhhhhHHhhhhhhhhcc-ccc--ccc---------------------------------------
Confidence            998876543  2  568999999999998873 221  111                                       


Q ss_pred             hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEE
Q 039161          166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESL  220 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  220 (333)
                      +++++.|++++|++++. + .++++++|++|++++|++++ ++ .++++++|++|
T Consensus       149 ~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         149 LTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             cccccccccccccccCC-c-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            67889999999999854 3 38899999999999999985 33 57888999876

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.70  E-value=1.1e-15  Score=131.48  Aligned_cols=96  Identities=26%  Similarity=0.282  Sum_probs=75.3

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      ++++|||+++.++. +|+.   .++|++|++++|+|+ .+|..   ..+|+.|++++|.++. ++..   .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~-l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECC
T ss_pred             CCCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccch-hhhh---cccccccccc
Confidence            58899999999984 5643   578999999999998 66764   3578999999999873 3321   2469999999


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccc
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTG  117 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~  117 (333)
                      +|.+...+.  +  ..+++|+.++++++.+..
T Consensus       107 ~n~l~~lp~--~--~~l~~L~~L~l~~~~~~~  134 (353)
T d1jl5a_         107 NNQLEKLPE--L--QNSSFLKIIDVDNNSLKK  134 (353)
T ss_dssp             SSCCSSCCC--C--TTCTTCCEEECCSSCCSC
T ss_pred             ccccccccc--h--hhhccceeeccccccccc
Confidence            999887653  2  568899999999888763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=6.7e-16  Score=111.86  Aligned_cols=104  Identities=23%  Similarity=0.311  Sum_probs=89.8

Q ss_pred             cEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccC
Q 039161            8 ITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSN   87 (333)
Q Consensus         8 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   87 (333)
                      |+|+|++|+++.. + .+.++++|++|++++|+++ .+|..|..+++|+.|++++|.++. ++ .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            5899999999844 4 3889999999999999998 578889999999999999999995 44 5899999999999999


Q ss_pred             cCCCCCCCCCCcccCCcccEEEcCCCcccc
Q 039161           88 QFDCPPCNSNITFPFQALRIIDLSHTEFTG  117 (333)
Q Consensus        88 ~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~  117 (333)
                      +++..+... ....+++|+.|++++|.++.
T Consensus        76 ~i~~~~~~~-~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          76 RLQQSAAIQ-PLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCCSSSTTG-GGGGCTTCCEEECTTSGGGG
T ss_pred             ccCCCCCch-hhcCCCCCCEEECCCCcCCc
Confidence            998776422 12778999999999999874

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=7.1e-17  Score=134.92  Aligned_cols=105  Identities=18%  Similarity=0.195  Sum_probs=66.6

Q ss_pred             ccEEECcCCccccccchhhhCCCCccEEECCCCcCcCC-CChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            7 LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGP-LPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         7 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      +..+.++...+...... ......|++||++++.++.. +...+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        25 ~~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls  103 (284)
T d2astb2          25 VIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  103 (284)
T ss_dssp             CSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             ceEeeccccccccchhh-hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccc
Confidence            34555555544422222 23456788888888877633 34446778888888888888877677777788888888888


Q ss_pred             cCc-CCCCCCCCCCcccCCcccEEEcCCC
Q 039161           86 SNQ-FDCPPCNSNITFPFQALRIIDLSHT  113 (333)
Q Consensus        86 ~n~-l~~~~~~~~~~~~l~~L~~L~ls~n  113 (333)
                      ++. ++..... .....+++|++|+++++
T Consensus       104 ~c~~itd~~l~-~l~~~~~~L~~L~ls~c  131 (284)
T d2astb2         104 GCSGFSEFALQ-TLLSSCSRLDELNLSWC  131 (284)
T ss_dssp             TCBSCCHHHHH-HHHHHCTTCCEEECCCC
T ss_pred             ccccccccccc-hhhHHHHhccccccccc
Confidence            753 3311100 01135678888888875

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=7.5e-16  Score=117.15  Aligned_cols=87  Identities=20%  Similarity=0.221  Sum_probs=57.5

Q ss_pred             hhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCc
Q 039161           25 FANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQA  104 (333)
Q Consensus        25 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~  104 (333)
                      |.+...+++|+|++|+|+. ++..+..+++|+.|+|++|.|+. ++ .+..+++|++|++++|+++...+..+  ..+++
T Consensus        14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~--~~l~~   88 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLD--QALPD   88 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHH--HHCTT
T ss_pred             ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCcccc--ccccc
Confidence            4566677777777777773 45556667777777777777763 32 46667777777777777766554332  44666


Q ss_pred             ccEEEcCCCccc
Q 039161          105 LRIIDLSHTEFT  116 (333)
Q Consensus       105 L~~L~ls~n~l~  116 (333)
                      |+.|++++|.++
T Consensus        89 L~~L~L~~N~i~  100 (162)
T d1a9na_          89 LTELILTNNSLV  100 (162)
T ss_dssp             CCEEECCSCCCC
T ss_pred             cccceecccccc
Confidence            666666666655

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.6e-16  Score=130.57  Aligned_cols=226  Identities=16%  Similarity=0.202  Sum_probs=137.3

Q ss_pred             cEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCc-ccccccCCCCCCEEEccc
Q 039161            8 ITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDS-FPCWMGSLSELKILVLRS   86 (333)
Q Consensus         8 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~   86 (333)
                      +++|++++.+.......+.. ..+..+.++...+...... .....+|++|+++++.++.. ....+..+++|++|++++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchhh-hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            47888887765322222221 2456677776665533222 33456888888888887643 334567788888888888


Q ss_pred             CcCCCCCCCCCCcccCCcccEEEcCCC-cccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161           87 NQFDCPPCNSNITFPFQALRIIDLSHT-EFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI  165 (333)
Q Consensus        87 n~l~~~~~~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (333)
                      +.+++.....+  ..+++|++|+++++ .++...-..+...+++|+.+++.++.....            .+........
T Consensus        81 ~~l~~~~~~~l--~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~------------~~~~~~~~~~  146 (284)
T d2astb2          81 LRLSDPIVNTL--AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE------------KHVQVAVAHV  146 (284)
T ss_dssp             CBCCHHHHHHH--TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH------------HHHHHHHHHS
T ss_pred             cCCCcHHHHHH--hcCCCCcCccccccccccccccchhhHHHHhcccccccccccccc------------ccchhhhccc
Confidence            87664433333  45778888888885 454322122334556677766654311000            0001112222


Q ss_pred             hhccceEEccCc--ccCcc-chhhhhCCCCCCEEEccCC-cCCCCCccccccCCCCcEEeCCCC-cCCCCCCCCccccCc
Q 039161          166 FVMFRAMDFSSN--RFHGE-ISEVLGNFKSLKVLNLSHN-SLTGNIPVSFENMTALESLDLSFN-KLDGRIPEQLLSVTA  240 (333)
Q Consensus       166 ~~~L~~L~ls~n--~l~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~  240 (333)
                      ++.|+.|+++++  .++.. +......+++|++|++++| .+++.....+..+++|++|++++| .+++.....+..+++
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~  226 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT  226 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCC
Confidence            467888888764  34422 2333456788888888876 466666667777888888888885 666655566777788


Q ss_pred             cceeecccC
Q 039161          241 LALLNLSYN  249 (333)
Q Consensus       241 L~~L~l~~N  249 (333)
                      |+.|+++++
T Consensus       227 L~~L~l~~~  235 (284)
T d2astb2         227 LKTLQVFGI  235 (284)
T ss_dssp             CCEEECTTS
T ss_pred             CCEEeeeCC
Confidence            888888776

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1e-15  Score=116.44  Aligned_cols=108  Identities=18%  Similarity=0.136  Sum_probs=91.5

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR   85 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   85 (333)
                      .+++|+|++|+|+.+ +..+..+++|+.|++++|.++. ++ .|..+++|++|++++|+++...+..+..+++|++|+++
T Consensus        19 ~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          19 RDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   95 (162)
T ss_dssp             SCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             cCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCccccccccccccceec
Confidence            689999999999955 6677889999999999999984 43 48899999999999999997666667789999999999


Q ss_pred             cCcCCCCCCCCCCcccCCcccEEEcCCCcccc
Q 039161           86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTG  117 (333)
Q Consensus        86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~  117 (333)
                      +|+++...... ....+++|++|++++|.++.
T Consensus        96 ~N~i~~~~~l~-~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          96 NNSLVELGDLD-PLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             SCCCCCGGGGG-GGGGCTTCCEEECCSSGGGG
T ss_pred             ccccccccccc-ccccccccchhhcCCCcccc
Confidence            99998764311 22678999999999999873

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=1.3e-14  Score=105.00  Aligned_cols=78  Identities=18%  Similarity=0.251  Sum_probs=62.1

Q ss_pred             cEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcC
Q 039161           32 RSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLS  111 (333)
Q Consensus        32 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls  111 (333)
                      |.|++++|+++ .++ .+..+++|++|++++|+++ .+|..+..+++|++|++++|.++..+.  +  ..+++|++++++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l~~--~--~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDG--V--ANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCGG--G--TTCSSCCEEECC
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccccCc--c--ccccccCeEECC
Confidence            57899999998 444 4788889999999999998 466778888999999999998886642  2  567778888888


Q ss_pred             CCccc
Q 039161          112 HTEFT  116 (333)
Q Consensus       112 ~n~l~  116 (333)
                      +|+++
T Consensus        74 ~N~i~   78 (124)
T d1dcea3          74 NNRLQ   78 (124)
T ss_dssp             SSCCC
T ss_pred             CCccC
Confidence            87776

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.54  E-value=2.7e-13  Score=116.10  Aligned_cols=209  Identities=22%  Similarity=0.222  Sum_probs=124.8

Q ss_pred             CCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcc------------------cccccCCCCCCEEEcccCcCC
Q 039161           29 SHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSF------------------PCWMGSLSELKILVLRSNQFD   90 (333)
Q Consensus        29 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~------------------~~~~~~l~~L~~L~L~~n~l~   90 (333)
                      +.|++|++++|.++ .+|. +..+++|++|++++|.+....                  ...+..++.++.+.+.+|...
T Consensus        98 ~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_          98 PLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred             cccccccccccccc-cccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccc
Confidence            46999999999998 4564 578899999999988775321                  123455678899999888765


Q ss_pred             CCCCC----------------CCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEe
Q 039161           91 CPPCN----------------SNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVA  154 (333)
Q Consensus        91 ~~~~~----------------~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~  154 (333)
                      .....                ......++.|+.+++++|.... ++..    ...+..+.+..+...-............
T Consensus       176 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~  250 (353)
T d1jl5a_         176 KLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPDL----PPSLEALNVRDNYLTDLPELPQSLTFLD  250 (353)
T ss_dssp             SCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCSC----CTTCCEEECCSSCCSCCCCCCTTCCEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc-cccc----cccccccccccccccccccccccccccc
Confidence            43211                0112457889999999987663 3321    2222222222211000000000000000


Q ss_pred             ec-CcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCC
Q 039161          155 MK-GHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE  233 (333)
Q Consensus       155 ~~-~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  233 (333)
                      .. .....+..........++..+.+.+ +   ...+++|++|++++|+++ .+|..   +++|+.|+|++|+|+ .+|.
T Consensus       251 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~-~---~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~  321 (353)
T d1jl5a_         251 VSENIFSGLSELPPNLYYLNASSNEIRS-L---CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPE  321 (353)
T ss_dssp             CCSSCCSEESCCCTTCCEEECCSSCCSE-E---CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCC
T ss_pred             cccccccccccccchhcccccccCcccc-c---cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-cccc
Confidence            00 0000111112334455666665552 2   234678999999999998 45543   578999999999998 5665


Q ss_pred             CccccCccceeecccCcceecCCC
Q 039161          234 QLLSVTALALLNLSYNRLWGRIPR  257 (333)
Q Consensus       234 ~~~~l~~L~~L~l~~N~l~~~~p~  257 (333)
                      .   +++|+.|++++|+++ .+|.
T Consensus       322 ~---~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         322 L---PQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             C---CTTCCEEECCSSCCS-SCCC
T ss_pred             c---cCCCCEEECcCCcCC-CCCc
Confidence            3   467899999999987 6664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.4e-14  Score=106.47  Aligned_cols=112  Identities=21%  Similarity=0.231  Sum_probs=85.7

Q ss_pred             hccceEEccCcccCccchhhhhCCCCCCEEEccCC-cCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161          167 VMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHN-SLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN  245 (333)
Q Consensus       167 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  245 (333)
                      ...+.++.+++++. ..|..+..+++|++|++++| .++...+..|.++++|+.|+|++|+|+.+.+..|..+++|+.|+
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            34566788888777 56677788888899998766 48877777888888999999999998877788888888899999


Q ss_pred             cccCcceecCCCCCccCCccccccccccCCCCCCCCCCCC
Q 039161          246 LSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCS  285 (333)
Q Consensus       246 l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C~  285 (333)
                      |++|+|+ .+|..    .|.... ...+.+.|||+.|+|.
T Consensus        87 Ls~N~l~-~l~~~----~~~~~~-l~~L~L~~Np~~C~C~  120 (156)
T d2ifga3          87 LSFNALE-SLSWK----TVQGLS-LQELVLSGNPLHCSCA  120 (156)
T ss_dssp             CCSSCCS-CCCST----TTCSCC-CCEEECCSSCCCCCGG
T ss_pred             ccCCCCc-ccChh----hhcccc-ccccccCCCcccCCch
Confidence            9999987 55554    233222 4456888888888885

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.47  E-value=3.6e-15  Score=128.06  Aligned_cols=87  Identities=24%  Similarity=0.327  Sum_probs=45.8

Q ss_pred             hhccceEEccCcccCcc-----chhhhhCCCCCCEEEccCCcCCCC----CccccccCCCCcEEeCCCCcCCCCCCCC--
Q 039161          166 FVMFRAMDFSSNRFHGE-----ISEVLGNFKSLKVLNLSHNSLTGN----IPVSFENMTALESLDLSFNKLDGRIPEQ--  234 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--  234 (333)
                      .+.|++|++++|+++..     +...+..+++|+.|++++|.++..    +...+..+++|++|+|++|.|++.....  
T Consensus       185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~  264 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  264 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHH
Confidence            45566666666665521     223345556666666666665422    2233445566666666666665422111  


Q ss_pred             --cc--ccCccceeecccCcce
Q 039161          235 --LL--SVTALALLNLSYNRLW  252 (333)
Q Consensus       235 --~~--~l~~L~~L~l~~N~l~  252 (333)
                        +.  ....|+.|++++|.++
T Consensus       265 ~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         265 DAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCB
T ss_pred             HHhhhccCCCCCEEECCCCcCC
Confidence              11  1234666666666664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.8e-15  Score=134.58  Aligned_cols=111  Identities=14%  Similarity=0.138  Sum_probs=58.3

Q ss_pred             cccEEECcCCcccccc-chhhhCCCCccEEECCCCcCcC----CCChhhcCCCCCcEEEccCCcCCCcc----ccccc-C
Q 039161            6 ELITLHLENNSLEGHI-HNTFANASHLRSLDLYSNKLEG----PLPRSLAKYIKLEVVNVENNMISDSF----PCWMG-S   75 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~~~-~   75 (333)
                      +|++||++.|++++.. .+.+..++++++|+|++|.++.    .+...+..+++|++|+|++|.|+...    ...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            4666677666665432 2334556666666666666652    23344556666666666666664321    11121 1


Q ss_pred             CCCCCEEEcccCcCCCCCCCCC--CcccCCcccEEEcCCCccc
Q 039161           76 LSELKILVLRSNQFDCPPCNSN--ITFPFQALRIIDLSHTEFT  116 (333)
Q Consensus        76 l~~L~~L~L~~n~l~~~~~~~~--~~~~l~~L~~L~ls~n~l~  116 (333)
                      ..+|++|++++|.++......+  .....++|++|++++|.++
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            2356666666666543321110  0134556666666666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.45  E-value=1.2e-14  Score=124.61  Aligned_cols=237  Identities=16%  Similarity=0.163  Sum_probs=154.5

Q ss_pred             cccEEECcCCccccccc----hhhhCCCCccEEECCCCcCcCC----------CChhhcCCCCCcEEEccCCcCCCcc--
Q 039161            6 ELITLHLENNSLEGHIH----NTFANASHLRSLDLYSNKLEGP----------LPRSLAKYIKLEVVNVENNMISDSF--   69 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~----------~p~~~~~l~~L~~L~L~~n~l~~~~--   69 (333)
                      .++.|+|++|.+.....    ..+...++|+.|+++++.....          +...+..+++|++|+|++|.++...  
T Consensus        32 ~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  111 (344)
T d2ca6a1          32 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE  111 (344)
T ss_dssp             CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred             CCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccccc
Confidence            68999999999865443    4456789999999998765421          2234567889999999999988643  


Q ss_pred             --cccccCCCCCCEEEcccCcCCCCCCCCC-----------CcccCCcccEEEcCCCcccccCCccc---ccChHHhhhh
Q 039161           70 --PCWMGSLSELKILVLRSNQFDCPPCNSN-----------ITFPFQALRIIDLSHTEFTGFLPRRI---FPSMEAMKNV  133 (333)
Q Consensus        70 --~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----------~~~~l~~L~~L~ls~n~l~~~~~~~~---~~~l~~L~~l  133 (333)
                        ...+..+++|++|++++|.+.......+           .....+.|+.+++++|.++......+   +.....++.+
T Consensus       112 ~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L  191 (344)
T d2ca6a1         112 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV  191 (344)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred             chhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhccc
Confidence              3344567899999999997642110000           01235688999999998763322111   2223344455


Q ss_pred             cccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCcc----chhhhhCCCCCCEEEccCCcCCCCCcc
Q 039161          134 DEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGE----ISEVLGNFKSLKVLNLSHNSLTGNIPV  209 (333)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~  209 (333)
                      ++..+......          ............+.|+.|++++|.++..    +...+..+++|++|+|++|.+++....
T Consensus       192 ~L~~n~i~~~g----------~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         192 KMVQNGIRPEG----------IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             ECCSSCCCHHH----------HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             ccccccccccc----------cccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhH
Confidence            54433210000          0000011123367899999999998643    445677899999999999999854333


Q ss_pred             c----cc--cCCCCcEEeCCCCcCCCCC----CCCcc-ccCccceeecccCcce
Q 039161          210 S----FE--NMTALESLDLSFNKLDGRI----PEQLL-SVTALALLNLSYNRLW  252 (333)
Q Consensus       210 ~----~~--~l~~L~~L~Ls~n~l~~~~----~~~~~-~l~~L~~L~l~~N~l~  252 (333)
                      .    +.  ..+.|++|++++|.|+...    ...+. ..++|+.|++++|.+.
T Consensus       262 ~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            3    32  2467999999999987532    22232 4678999999999995

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.44  E-value=2.1e-15  Score=118.61  Aligned_cols=130  Identities=18%  Similarity=0.211  Sum_probs=86.5

Q ss_pred             CCccEEECCCC--cCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCccc
Q 039161           29 SHLRSLDLYSN--KLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALR  106 (333)
Q Consensus        29 ~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~  106 (333)
                      ..++.+++.+.  .++ .++.++..+++|++|+|++|.|+. ++ .+..+++|++|++++|.++..+..   ...+++|+
T Consensus        23 ~~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~i~~~---~~~~~~L~   96 (198)
T d1m9la_          23 TEAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENL---DAVADTLE   96 (198)
T ss_dssp             TTCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECSCSSH---HHHHHHCC
T ss_pred             cccceeeeecccCchh-hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccccccc---cccccccc
Confidence            34566666654  233 566778888888999998888884 33 477888899999988888755321   13345677


Q ss_pred             EEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCccch-h
Q 039161          107 IIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEIS-E  185 (333)
Q Consensus       107 ~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~  185 (333)
                      .|++++|.++. ++.  +                                       ..+++|+.|++++|+++.... .
T Consensus        97 ~L~l~~N~i~~-l~~--~---------------------------------------~~l~~L~~L~L~~N~i~~~~~~~  134 (198)
T d1m9la_          97 ELWISYNQIAS-LSG--I---------------------------------------EKLVNLRVLYMSNNKITNWGEID  134 (198)
T ss_dssp             EEECSEEECCC-HHH--H---------------------------------------HHHHHSSEEEESEEECCCHHHHH
T ss_pred             ccccccccccc-ccc--c---------------------------------------cccccccccccccchhccccccc
Confidence            78887777662 110  0                                       115677788888887773321 4


Q ss_pred             hhhCCCCCCEEEccCCcCCCC
Q 039161          186 VLGNFKSLKVLNLSHNSLTGN  206 (333)
Q Consensus       186 ~~~~l~~L~~L~Ls~n~l~~~  206 (333)
                      .+..+++|+.|++++|.+...
T Consensus       135 ~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         135 KLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHTTTTTCSEEEECSSHHHHH
T ss_pred             cccCCCccceeecCCCccccC
Confidence            567778888888888876543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5.7e-13  Score=100.26  Aligned_cols=107  Identities=15%  Similarity=0.053  Sum_probs=93.4

Q ss_pred             cccEEECcCCccccccchhhhCCCCccEEECCCC-cCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEc
Q 039161            6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSN-KLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVL   84 (333)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   84 (333)
                      ..++++.+++.+. ..|..+.++++|++|++++| .++...+.+|.++++|+.|++++|+|+...+.+|..+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            4577899999887 45677889999999999866 588777788999999999999999999887889999999999999


Q ss_pred             ccCcCCCCCCCCCCcccCCcccEEEcCCCccc
Q 039161           85 RSNQFDCPPCNSNITFPFQALRIIDLSHTEFT  116 (333)
Q Consensus        85 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~  116 (333)
                      ++|+++..++..+  . ..+|+.|++++|.+.
T Consensus        88 s~N~l~~l~~~~~--~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          88 SFNALESLSWKTV--Q-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             CSSCCSCCCSTTT--C-SCCCCEEECCSSCCC
T ss_pred             cCCCCcccChhhh--c-cccccccccCCCccc
Confidence            9999998887765  3 347999999999886

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.37  E-value=1.2e-14  Score=114.27  Aligned_cols=144  Identities=22%  Similarity=0.229  Sum_probs=106.0

Q ss_pred             CCcEEEccCC--cCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhh
Q 039161           54 KLEVVNVENN--MISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMK  131 (333)
Q Consensus        54 ~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~  131 (333)
                      .++.+++.++  .+. .++..+..+++|++|++++|+++...  .+  ..+++|++|++++|.++ .++..         
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i~--~l--~~l~~L~~L~Ls~N~i~-~i~~~---------   88 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKIS--SL--SGMENLRILSLGRNLIK-KIENL---------   88 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCCC--CH--HHHTTCCEEECCEEEEC-SCSSH---------
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccCCCCcc--cc--cCCccccChhhcccccc-ccccc---------
Confidence            4555666544  233 45667888999999999999998764  23  67899999999999887 33321         


Q ss_pred             hhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCc-cc
Q 039161          132 NVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIP-VS  210 (333)
Q Consensus       132 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~  210 (333)
                                                     ...++.|+.|++++|+++. ++ .+..+++|+.|++++|+++.... ..
T Consensus        89 -------------------------------~~~~~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~L~~N~i~~~~~~~~  135 (198)
T d1m9la_          89 -------------------------------DAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDK  135 (198)
T ss_dssp             -------------------------------HHHHHHCCEEECSEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHH
T ss_pred             -------------------------------ccccccccccccccccccc-cc-cccccccccccccccchhcccccccc
Confidence                                           1115678999999999984 43 47788999999999999985432 46


Q ss_pred             cccCCCCcEEeCCCCcCCCCCCCC----------ccccCccceee
Q 039161          211 FENMTALESLDLSFNKLDGRIPEQ----------LLSVTALALLN  245 (333)
Q Consensus       211 ~~~l~~L~~L~Ls~n~l~~~~~~~----------~~~l~~L~~L~  245 (333)
                      +..+++|+.|++++|.+....+..          +..+++|+.||
T Consensus       136 l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         136 LAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            788999999999999887543332          45577777765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.2e-13  Score=120.83  Aligned_cols=86  Identities=23%  Similarity=0.216  Sum_probs=48.6

Q ss_pred             hccceEEccCcccCccchh----hhhCCCCCCEEEccCCcCCCC----Cccccc-cCCCCcEEeCCCCcCCCC----CCC
Q 039161          167 VMFRAMDFSSNRFHGEISE----VLGNFKSLKVLNLSHNSLTGN----IPVSFE-NMTALESLDLSFNKLDGR----IPE  233 (333)
Q Consensus       167 ~~L~~L~ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~----~~~~~~-~l~~L~~L~Ls~n~l~~~----~~~  233 (333)
                      ..|+.++++++.++.....    .+...++|++|+|++|+++..    ++..+. ..+.|++|+|++|.|++.    ++.
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~  391 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  391 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHH
Confidence            4566777777666543322    233445677777777766532    122222 345577777777776542    233


Q ss_pred             CccccCccceeecccCcce
Q 039161          234 QLLSVTALALLNLSYNRLW  252 (333)
Q Consensus       234 ~~~~l~~L~~L~l~~N~l~  252 (333)
                      .+..+++|++|++++|+++
T Consensus       392 ~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         392 TLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             HHHHCCCCCEEECCSSSCC
T ss_pred             HHhcCCCCCEEECCCCcCC
Confidence            3445566777777777764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.4e-08  Score=76.20  Aligned_cols=90  Identities=21%  Similarity=0.122  Sum_probs=67.3

Q ss_pred             ccchhhhCCCCccEEECCCCcCcCCC--ChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCC-
Q 039161           20 HIHNTFANASHLRSLDLYSNKLEGPL--PRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNS-   96 (333)
Q Consensus        20 ~~~~~~~~l~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-   96 (333)
                      .++..+..+++|++|+|++|+|+...  +..+..+++|+.|+|++|.++...+-.+....+|+.|++++|++....... 
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~  135 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQS  135 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHH
T ss_pred             hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccch
Confidence            44555678999999999999998543  355778999999999999998654434445668999999999987654432 


Q ss_pred             ----CCcccCCcccEEE
Q 039161           97 ----NITFPFQALRIID  109 (333)
Q Consensus        97 ----~~~~~l~~L~~L~  109 (333)
                          .....+|+|+.||
T Consensus       136 ~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         136 TYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHTTSTTCCEET
T ss_pred             hHHHHHHHHCCCCCEEC
Confidence                1224688999886

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=4.8e-08  Score=73.19  Aligned_cols=80  Identities=26%  Similarity=0.263  Sum_probs=55.1

Q ss_pred             hhccceEEccCcccCcc--chhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCC-------cc
Q 039161          166 FVMFRAMDFSSNRFHGE--ISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQ-------LL  236 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-------~~  236 (333)
                      ++.|++|++++|+++..  ++..+..+++|+.|++++|.++...+-.+.....|+.|++++|.+.......       +.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            67788888888888743  2345677888888888888888544434444556888888888887544322       44


Q ss_pred             ccCccceee
Q 039161          237 SVTALALLN  245 (333)
Q Consensus       237 ~l~~L~~L~  245 (333)
                      .+++|+.||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            567777765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.17  E-value=5.6e-07  Score=67.52  Aligned_cols=112  Identities=13%  Similarity=0.127  Sum_probs=78.3

Q ss_pred             CcCcccEEECcCC-ccccc----cchhhhCCCCccEEECCCCcCcC----CCChhhcCCCCCcEEEccCCcCCCcc----
Q 039161            3 FSTELITLHLENN-SLEGH----IHNTFANASHLRSLDLYSNKLEG----PLPRSLAKYIKLEVVNVENNMISDSF----   69 (333)
Q Consensus         3 l~~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~----   69 (333)
                      .| +|++|+|+++ .++..    +-.++...+.|++|+|++|.++.    .+...+...+.|++|+|++|.++...    
T Consensus        14 ~~-~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          14 DT-DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             CS-SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CC-CCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            35 8999999974 56532    23456678889999999999873    23345566789999999999998543    


Q ss_pred             cccccCCCCCCEEEcccCcCCCCCCCC---C--CcccCCcccEEEcCCCcc
Q 039161           70 PCWMGSLSELKILVLRSNQFDCPPCNS---N--ITFPFQALRIIDLSHTEF  115 (333)
Q Consensus        70 ~~~~~~l~~L~~L~L~~n~l~~~~~~~---~--~~~~l~~L~~L~ls~n~l  115 (333)
                      ...+...+.|++|++++|++.......   +  .....++|+.|+++.+..
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            235667788999999998765432110   1  112457888898877643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.92  E-value=1.7e-06  Score=64.79  Aligned_cols=86  Identities=14%  Similarity=0.150  Sum_probs=55.9

Q ss_pred             hhccceEEccCcccCc----cchhhhhCCCCCCEEEccCCcCCCCC----ccccccCCCCcEEeCCCCcCCCC-------
Q 039161          166 FVMFRAMDFSSNRFHG----EISEVLGNFKSLKVLNLSHNSLTGNI----PVSFENMTALESLDLSFNKLDGR-------  230 (333)
Q Consensus       166 ~~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~-------  230 (333)
                      .+.|++|++++|.+..    .+.+.+...+.|++|+|++|.++...    ..++...++|++|++++|.+...       
T Consensus        43 n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~  122 (167)
T d1pgva_          43 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  122 (167)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             CCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHH
Confidence            4567888888887763    23344556678888888888887432    23455567788888888866532       


Q ss_pred             CCCCccccCccceeecccCcc
Q 039161          231 IPEQLLSVTALALLNLSYNRL  251 (333)
Q Consensus       231 ~~~~~~~l~~L~~L~l~~N~l  251 (333)
                      +...+...++|+.|+++.+..
T Consensus       123 l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         123 MMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhCCCccEeeCcCCCc
Confidence            223344456777777766543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.36  E-value=1.2e-05  Score=59.91  Aligned_cols=112  Identities=18%  Similarity=0.127  Sum_probs=73.5

Q ss_pred             CcCcccEEECcC-Cccccc----cchhhhCCCCccEEECCCCcCcCC----CChhhcCCCCCcEEEccCCcCCCcc----
Q 039161            3 FSTELITLHLEN-NSLEGH----IHNTFANASHLRSLDLYSNKLEGP----LPRSLAKYIKLEVVNVENNMISDSF----   69 (333)
Q Consensus         3 l~~~L~~L~L~~-n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~----   69 (333)
                      .| .|++|+|++ +.++..    +-.++...++|++|++++|.++..    +...+....+++.+++++|.++...    
T Consensus        16 ~~-~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          16 DP-DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             CT-TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             CC-CCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            35 799999987 456532    234456788999999999988643    2334566788999999999887532    


Q ss_pred             cccccCCCCCCEEEcc--cCcCCCCCCCCC--CcccCCcccEEEcCCCcc
Q 039161           70 PCWMGSLSELKILVLR--SNQFDCPPCNSN--ITFPFQALRIIDLSHTEF  115 (333)
Q Consensus        70 ~~~~~~l~~L~~L~L~--~n~l~~~~~~~~--~~~~l~~L~~L~ls~n~l  115 (333)
                      ...+...++|+.++|.  +|.+.......+  .....++|+.|+++.+..
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            2456677888887665  444432111111  113567888888876643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.18  E-value=3e-05  Score=57.66  Aligned_cols=17  Identities=29%  Similarity=0.335  Sum_probs=8.1

Q ss_pred             hCCCCCCEEEccCCcCC
Q 039161          188 GNFKSLKVLNLSHNSLT  204 (333)
Q Consensus       188 ~~l~~L~~L~Ls~n~l~  204 (333)
                      ...+.++.+++++|.+.
T Consensus        71 ~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          71 KVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             HHCSSCCEEECCSSCCC
T ss_pred             hhcccchhhhhcccccc
Confidence            33444555555554443