Citrus Sinensis ID: 039163

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-
MKSPCSSVIPLVFVLLLSYNSWVSYANVHATSSKPADHHNENLFLDCLRSDNSSISQVIYTKYSPSYSSVLSSSTQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKISVDAKQKTAWVQSGATLGQLYYRIAEKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDAHGRLLDRKSMGEDLFWAIRGGGGASFGVVVAWKLRLVTVPSTVTRFTITRTLEQNATKIVHKWQYVANNLHEDLVIEVGLIKMNSSMLAAFSSLFLGGVDRLLPLMQESFPELGLRKDDCTEMSWIESVHNLAGFDKGQSLDLLLDRNARSNGLVVKSTTKSPFKAKADYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISESETPFPHRAGNLYKIFYGVSWGGDGISQRHIDWIRSLYSYMTPYVSKNPREAYVNYRDLDIGINNPGYTSIEQASIWGNKYFKNNFKRLVHVKTMADPHNFFRNEQSIPPHTSRRNKNDGD
cccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccccccEEEccccccHHHHHHHccccccccccccccccEEEEEccHHHHHHHHHHHHHcccEEEEEccccccccccccccccEEEEEccccccEEEEccccEEEEcccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHcccccEEEEEEEEEEEcccEEEccccccccEEEEEccccccEEEEEEEEEEEEcccccEEEEEEEccHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccccEEEEEEEEEccHHHHHHHHHcccccccccccccccccHHHHHHHHccccccccHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEEccccccccccccccccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHccccccccccEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccc
cccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccccccEEEccccccHHHHHHHHHHccccccccccccEEEEEccccHHHHEHEHHHHHcccEEEEEcccccccccEEEccccEEEEEcHHcccEEEEcccccEEEEccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccEEEEEEEEccccEEcHHHHcccHHEEEEccccccEEEEEEEEEEEEccccEEEEEEEcccHcccHHHHHHHHHHHHHcccccEEEEEEEEccccEEEEEEEEEEcccHHHHHHHHHHHccHccccHccHHHHHHHHHHHHHccccccccHHHHHccccccHcccccccccHHcccccccccccccHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEccccccccccccccccccccccccccc
mkspcssviPLVFVLLLSYNSWVSYANVhatsskpadhhnenlfldclrsdnssisqviytkyspsyssvlssstqnlrfstpntpkpqviitpldVSQVQAAIKCSKKQGLQIRVrsgghdfeglsyvshVPFVVIDLINLCKISVdakqktawvqsGATLGQLYYRIAEksknlgfpggvcptvgvgghfsgggYGIMLRKFGLAADNIVDAHLIDAHGRLLDRKSMGEDLFWAirggggasFGVVVAWKLRLVTVPSTVTRFTITRTLEQNATKIVHKWQYVANNLHEDLVIEVGLIKMNSSMLAAFSSLFLGgvdrllplmqesfpelglrkddctemswIESVHnlagfdkgqsLDLLLDRnarsnglvvksttkspfkakadyvkqpipenafegiydkfyeeegETAFIVLVPyggkmseisesetpfphragnLYKIFYgvswggdgisqRHIDWIRSLYSymtpyvsknpreayvnyrdldiginnpgytsieqASIWGNKYFKNNFKRLVHVKtmadphnffrneqsipphtsrrnkndgd
mkspcssvIPLVFVLLLSYNSWVSYANVHATSSKPADHHNENLFLDCLRSDNSSISQVIYTKYSPSYSSVLSSSTQNLRFSTPNTPKPQVIITPLDVSQVQAAIKcskkqglqIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKISVDAKQKTAWVQSGATLGQLYYRIAEKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDAHGRLLDRKSMGEDLFWAIRGGGGASFGVVVAWKLRLVtvpstvtrftitrtleqnaTKIVHKWQYVANNLHEDLVIEVGLIKMNSSMLAAFSSLFLGGVDRLLPLMQESFPELGLRKDDCTEMSWIESVHNLAGFDKGQSLDLLLDRNArsnglvvksttkspfkakadyvkqpipeNAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISESETPFPHRAGNLYKIFYGVSWGGDGISQRHIDWIRSLYSYMTPYVSKNPREAYVNYRDLDIGINNPGYTSIEQASIWGNKYFKNNFKRLVHVKTMADPhnffrneqsipphtsrrnkndgd
MKSPCSSVIPLVFVLLLSYNSWVSYANVHATSSKPADHHNENLFLDCLRSDNSSISQVIYTKYspsyssvlsssTQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKISVDAKQKTAWVQSGATLGQLYYRIAEKSKNLgfpggvcptvgvgghfsgggygIMLRKFGLAADNIVDAHLIDAHGRLLDRKSMGEDLFWairggggasfgvvvaWKLRLVTVPSTVTRFTITRTLEQNATKIVHKWQYVANNLHEDLVIEVGLIKMNssmlaafsslflGGVDRLLPLMQESFPELGLRKDDCTEMSWIESVHNLAGFDKGQSLDLLLDRNARSNGLVVKSTTKSPFKAKADYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISESETPFPHRAGNLYKIFYGVSWGGDGISQRHIDWIRSLYSYMTPYVSKNPREAYVNYRDLDIGINNPGYTSIEQASIWGNKYFKNNFKRLVHVKTMADPHNFFRNEQSIPPHTSRRNKNDGD
******SVIPLVFVLLLSYNSWVSYANVHAT********NENLFLDCLRSDNSSISQVIYTKYS*************************VIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKISVDAKQKTAWVQSGATLGQLYYRIAEKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDAHGRLLDRKSMGEDLFWAIRGGGGASFGVVVAWKLRLVTVPSTVTRFTITRTLEQNATKIVHKWQYVANNLHEDLVIEVGLIKMNSSMLAAFSSLFLGGVDRLLPLMQESFPELGLRKDDCTEMSWIESVHNLAGFDKGQSLDLLLDRNARSNGLVVK******FKAKADYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKM*********FPHRAGNLYKIFYGVSWGGDGISQRHIDWIRSLYSYMTPYVSKNPREAYVNYRDLDIGINNPGYTSIEQASIWGNKYFKNNFKRLVHVKTMADPHNF********************
*********PLVFVLLLSYNSWVSYANVHA************LFLDCLRSDNSSISQVIYTKYSPSYSSVLSSSTQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKISVDAKQKTAWVQSGATLGQLYYRIAEKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDAHGRLLDRKSMGEDLFWAIRGGGGASFGVVVAWKLRLVTVPSTVTRFTITRTLEQNATKIVHKWQYVANNLHEDLVIEVGLIKMNSSMLAAFSSLFLGGVDRLLPLMQESFPELGLRKDDCTEMSWIESVHNLAGFDKGQSLDLLLDRNARSNGLVVKSTTKSPFKAKADYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISESETPFPHRAGNLYKIFYGVSWGGDGISQRHIDWIRSLYSYMTPYVSKNPREAYVNYRDLDIGINNPGYTSIEQASIWGNKYFKNNFKRLVHVKTMADPHNFFRNEQ***************
MKSPCSSVIPLVFVLLLSYNSWVSYANVHATSSKPADHHNENLFLDCLRSDNSSISQVIYTKYSP****************TPNTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKISVDAKQKTAWVQSGATLGQLYYRIAEKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDAHGRLLDRKSMGEDLFWAIRGGGGASFGVVVAWKLRLVTVPSTVTRFTITRTLEQNATKIVHKWQYVANNLHEDLVIEVGLIKMNSSMLAAFSSLFLGGVDRLLPLMQESFPELGLRKDDCTEMSWIESVHNLAGFDKGQSLDLLLDRNARSNGLVVKSTTKSPFKAKADYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISESETPFPHRAGNLYKIFYGVSWGGDGISQRHIDWIRSLYSYMTPYVSKNPREAYVNYRDLDIGINNPGYTSIEQASIWGNKYFKNNFKRLVHVKTMADPHNFFRNEQSIP************
****CSSVIPLVFVLLLSYNSWVSYANVHATSSKPADHHNENLFLDCLRSDNSSISQVIYTKYSPSYSSVLSSSTQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKISVDAKQKTAWVQSGATLGQLYYRIAEKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDAHGRLLDRKSMGEDLFWAIRGGGGASFGVVVAWKLRLVTVPSTVTRFTITRTLEQNATKIVHKWQYVANNLHEDLVIEVGLIKMNSSMLAAFSSLFLGGVDRLLPLMQESFPELGLRKDDCTEMSWIESVHNLAGFDKGQSLDLLLDRNARSNGLVVKSTTKSPFKAKADYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISESETPFPHRAGNLYKIFYGVSWGGDGISQRHIDWIRSLYSYMTPYVSKNPREAYVNYRDLDIGINNPGYTSIEQASIWGNKYFKNNFKRLVHVKTMADPHNFFRNEQSIPPH**********
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKSPCSSVIPLVFVLLLSYNSWVSYANVHATSSKPADHHNENLFLDCLRSDNSSISQVIYTKYSPSYSSVLSSSTQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKISVDAKQKTAWVQSGATLGQLYYRIAEKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDAHGRLLDRKSMGEDLFWAIRGGGGASFGVVVAWKLRLVTVPSTVTRFTITRTLEQNATKIVHKWQYVANNLHEDLVIEVGLIKMNSSMLAAFSSLFLGGVDRLLPLMQESFPELGLRKDDCTEMSWIESVHNLAGFDKGQSLDLLLDRNARSNGLVVKSTTKSPFKAKADYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISESETPFPHRAGNLYKIFYGVSWGGDGISQRHIDWIRSLYSYMTPYVSKNPREAYVNYRDLDIGINNPGYTSIEQASIWGNKYFKNNFKRLVHVKTMADPHNFFRNEQSIPPHTSRRNKNDGD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query551 2.2.26 [Sep-21-2011]
A6P6V9544 Cannabidiolic acid syntha N/A no 0.894 0.906 0.523 1e-150
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.914 0.924 0.509 1e-148
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.878 0.888 0.527 1e-147
A6P6W1545 Cannabidiolic acid syntha N/A no 0.927 0.937 0.496 1e-147
A6P6W0545 Cannabidiolic acid syntha N/A no 0.927 0.937 0.494 1e-147
Q9SVG4570 Reticuline oxidase-like p no no 0.882 0.852 0.464 1e-115
P93479535 Reticuline oxidase OS=Pap N/A no 0.883 0.910 0.439 1e-107
P30986538 Reticuline oxidase OS=Esc N/A no 0.874 0.895 0.426 1e-102
O06997447 Uncharacterized FAD-linke yes no 0.740 0.912 0.299 3e-26
Q796Y5451 Uncharacterized FAD-linke no no 0.782 0.955 0.252 4e-22
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function desciption
 Score =  532 bits (1371), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 273/521 (52%), Positives = 365/521 (70%), Gaps = 28/521 (5%)

Query: 44  FLDCLRS---DNSSISQVIYTKYSPSYSSVLSSSTQNLRFSTPNTPKPQVIITPLDVSQV 100
           FL C      +N++  +++YT+ +P Y SVL+S+  NLRF++  TPKP VI+TP  VS +
Sbjct: 34  FLKCFSQYIPNNATNLKLVYTQNNPLYMSVLNSTIHNLRFTSDTTPKPLVIVTPSHVSHI 93

Query: 101 QAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKISVDAKQKTAWVQSGA 160
           Q  I CSKK GLQIR RSGGHD EG+SY+S VPFV++DL N+  I +D   +TAWV++GA
Sbjct: 94  QGTILCSKKVGLQIRTRSGGHDSEGMSYISQVPFVIVDLRNMRSIKIDVHSQTAWVEAGA 153

Query: 161 TLGQLYYRIAEKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDAH 220
           TLG++YY + EK++NL    G CPTV  GGHF GGGYG ++R +GLAADNI+DAHL++ H
Sbjct: 154 TLGEVYYWVNEKNENLSLAAGYCPTVCAGGHFGGGGYGPLMRNYGLAADNIIDAHLVNVH 213

Query: 221 GRLLDRKSMGEDLFWAIRGGGGASFGVVVAWKLRLVTVPSTVTRFTITRTLE-QNATKIV 279
           G++LDRKSMGEDLFWA+RGGG  SFG++VAWK+RLV VP + T F++ + +E     K+V
Sbjct: 214 GKVLDRKSMGEDLFWALRGGGAESFGIIVAWKIRLVAVPKS-TMFSVKKIMEIHELVKLV 272

Query: 280 HKWQYVANNLHEDLVIEVGLIKMN---------SSMLAAFSSLFLGGVDRLLPLMQESFP 330
           +KWQ +A    +DL++    I  N         +++   FSS+FLGGVD L+ LM +SFP
Sbjct: 273 NKWQNIAYKYDKDLLLMTHFITRNITDNQGKNKTAIHTYFSSVFLGGVDSLVDLMNKSFP 332

Query: 331 ELGLRKDDCTEMSWIESVHNLAG---FDKGQ-SLDLLLDRNARSNGLVVKSTTKSPFKAK 386
           ELG++K DC ++SWI+++   +G   +D    + ++LLDR+A  NG          FK K
Sbjct: 333 ELGIKKTDCRQLSWIDTIIFYSGVVNYDTDNFNKEILLDRSAGQNG---------AFKIK 383

Query: 387 ADYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISESETPFPHRAGNLYKIF 446
            DYVK+PIPE+ F  I +K YEE+       L PYGG M EISES  PFPHRAG LY+++
Sbjct: 384 LDYVKKPIPESVFVQILEKLYEEDIGAGMYALYPYGGIMDEISESAIPFPHRAGILYELW 443

Query: 447 YGVSWGGDGISQRHIDWIRSLYSYMTPYVSKNPREAYVNYRDLDIGINNP-GYTSIEQAS 505
           Y  SW     +++H++WIR++Y++MTPYVSKNPR AY+NYRDLDIGIN+P    +  QA 
Sbjct: 444 YICSWEKQEDNEKHLNWIRNIYNFMTPYVSKNPRLAYLNYRDLDIGINDPKNPNNYTQAR 503

Query: 506 IWGNKYFKNNFKRLVHVKTMADPHNFFRNEQSIPPHTSRRN 546
           IWG KYF  NF RLV VKT+ DP+NFFRNEQSIPP    R+
Sbjct: 504 IWGEKYFGKNFDRLVKVKTLVDPNNFFRNEQSIPPLPRHRH 544
Catalyzes the stereoselective oxidative cyclization of the monoterpene moiety in cannabigerolic acid (CBGA), producing cannabidiolate (CBDA), the major cannabioid in fiber-type Cannabis plants. Can also use cannabinerolic acid as substrate, but not cannabigerol or cannabinerol.
Cannabis sativa (taxid: 3483)
EC: 1EC: .EC: 2EC: 1EC: .EC: 3EC: .EC: 8
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function description
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description
>sp|Q796Y5|YGAK_BACSU Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) GN=ygaK PE=3 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query551
224056831533 predicted protein [Populus trichocarpa] 0.934 0.966 0.618 0.0
224115242527 predicted protein [Populus trichocarpa] 0.900 0.941 0.638 0.0
224110866533 predicted protein [Populus trichocarpa] 0.945 0.977 0.615 0.0
224108834533 predicted protein [Populus trichocarpa] 0.945 0.977 0.613 0.0
224122386533 predicted protein [Populus trichocarpa] 0.945 0.977 0.608 0.0
358348153543 Reticuline oxidase [Medicago truncatula] 0.905 0.918 0.631 0.0
224108830533 predicted protein [Populus trichocarpa] 0.945 0.977 0.611 0.0
224122390501 predicted protein [Populus trichocarpa] 0.883 0.972 0.636 0.0
224103509531 predicted protein [Populus trichocarpa] 0.901 0.935 0.632 0.0
224122382534 predicted protein [Populus trichocarpa] 0.900 0.928 0.634 0.0
>gi|224056831|ref|XP_002299045.1| predicted protein [Populus trichocarpa] gi|222846303|gb|EEE83850.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/550 (61%), Positives = 416/550 (75%), Gaps = 35/550 (6%)

Query: 6   SSVIPLVFVLLLSYNSWVSYANVHATSSKPADHHNENLFLDCLR---SDNSSISQVIYTK 62
           +S++P +  LL+S+ SWV  A            H    FL CL     D +++S  I+T 
Sbjct: 6   ASMLPFLLCLLISF-SWVISA------------HPREDFLKCLSLHFEDPAAMSNAIHTP 52

Query: 63  YSPSYSSVLSSSTQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHD 122
           Y+ SYSS+L  S +NLRF++    KP VI+TP + S +QAAI CS++  LQIR+RSGGHD
Sbjct: 53  YNSSYSSILQFSIRNLRFNSSEL-KPLVIVTPTNASHIQAAILCSQRHNLQIRIRSGGHD 111

Query: 123 FEGLSYVSHVPFVVIDLINLCKISVDAKQKTAWVQSGATLGQLYYRIAEKSKNLGFPGGV 182
           FEGLSY++ +PFV+IDLI+L  ++VDA  +TAWVQ+GATLG+LYY I+EKS+ L FP G 
Sbjct: 112 FEGLSYMAALPFVIIDLISLRAVNVDATSRTAWVQAGATLGELYYSISEKSRTLAFPAGS 171

Query: 183 CPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDAHGRLLDRKSMGEDLFWAIRGGGG 242
           CPT+GVGGHFSGGG+G M+RKFGLA+DN++DAHLID+ GR+LDR SMGEDLFWAIRGGGG
Sbjct: 172 CPTIGVGGHFSGGGHGTMVRKFGLASDNVIDAHLIDSKGRILDRASMGEDLFWAIRGGGG 231

Query: 243 ASFGVVVAWKLRLVTVPSTVTRFTITRTLEQNATKIVHKWQYVANNLHEDLVIEVGLIKM 302
            SFGVVVAWK+ LV VPSTVT F+++RTLEQNATK++H+WQYVAN L EDLVI+V + ++
Sbjct: 232 QSFGVVVAWKISLVEVPSTVTMFSVSRTLEQNATKLLHRWQYVANTLPEDLVIDVQVTRV 291

Query: 303 NSS------MLAAFSSLFLGGVDRLLPLMQESFPELGLRKDDCTEMSWIESVHNLAGFDK 356
           NSS      + A F SLFLG VD+LLP+MQESFPELGL KDDC EMSWIESV    GF  
Sbjct: 292 NSSQEGNTTIQATFFSLFLGEVDQLLPVMQESFPELGLVKDDCFEMSWIESVFYTGGFTS 351

Query: 357 GQSLDLLLDRNARSNGLVVKSTTKSPFKAKADYVKQPIPENAFEGIYDKFYEEEGETAFI 416
             SLD+LL+R  RS            FKAK+DYVK+P+PE AFEGI+++F+EE+ E   +
Sbjct: 352 NASLDVLLNRTPRS---------IPRFKAKSDYVKEPMPEIAFEGIWERFFEEDIEAPTL 402

Query: 417 VLVPYGGKMSEISESETPFPHRAGNLYKIFYGVSWGGDG--ISQRHIDWIRSLYSYMTPY 474
           +L+PYGGKM EISES TPFPHRAGNLY +   VSW  +    S+RH+ WIR LYSY+T Y
Sbjct: 403 ILIPYGGKMDEISESSTPFPHRAGNLYVLVSSVSWREESKEASRRHMAWIRRLYSYLTKY 462

Query: 475 VSKNPREAYVNYRDLDIGINN-PGYTSIEQASIWGNKYFKNNFKRLVHVKTMADPHNFFR 533
           VSKNPREAYVNYRDLD+GINN  G TS +QASIWG KYFKNNF RLV VKT  DP NFFR
Sbjct: 463 VSKNPREAYVNYRDLDLGINNLTGTTSYKQASIWGRKYFKNNFDRLVRVKTEVDPTNFFR 522

Query: 534 NEQSIPPHTS 543
           NEQSIP  +S
Sbjct: 523 NEQSIPSLSS 532

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224115242|ref|XP_002332196.1| predicted protein [Populus trichocarpa] gi|222875303|gb|EEF12434.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224110866|ref|XP_002333020.1| predicted protein [Populus trichocarpa] gi|222834634|gb|EEE73097.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224108834|ref|XP_002333339.1| predicted protein [Populus trichocarpa] gi|222836259|gb|EEE74680.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122386|ref|XP_002330610.1| predicted protein [Populus trichocarpa] gi|222872168|gb|EEF09299.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|358348153|ref|XP_003638113.1| Reticuline oxidase [Medicago truncatula] gi|355504048|gb|AES85251.1| Reticuline oxidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|224108830|ref|XP_002333338.1| predicted protein [Populus trichocarpa] gi|222836258|gb|EEE74679.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122390|ref|XP_002330611.1| predicted protein [Populus trichocarpa] gi|222872169|gb|EEF09300.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224103509|ref|XP_002334045.1| predicted protein [Populus trichocarpa] gi|222839749|gb|EEE78072.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122382|ref|XP_002330609.1| predicted protein [Populus trichocarpa] gi|222872167|gb|EEF09298.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query551
TAIR|locus:2121534532 AT4G20820 [Arabidopsis thalian 0.898 0.930 0.430 3.5e-114
TAIR|locus:2158740537 AT5G44400 [Arabidopsis thalian 0.938 0.962 0.432 1.4e-112
TAIR|locus:2044692532 MEE23 "MATERNAL EFFECT EMBRYO 0.871 0.902 0.451 2e-111
TAIR|locus:2158720541 AT5G44380 [Arabidopsis thalian 0.941 0.959 0.435 2e-111
TAIR|locus:2158700532 AT5G44360 [Arabidopsis thalian 0.929 0.962 0.435 2.6e-111
TAIR|locus:2163411535 AT5G44410 [Arabidopsis thalian 0.923 0.951 0.424 1.1e-110
TAIR|locus:2163441533 AT5G44440 [Arabidopsis thalian 0.909 0.939 0.433 1.3e-109
TAIR|locus:2204579534 AT1G30760 [Arabidopsis thalian 0.929 0.958 0.435 1.6e-109
TAIR|locus:2133044530 AT4G20860 [Arabidopsis thalian 0.816 0.849 0.457 1.1e-108
TAIR|locus:2158730542 AT5G44390 [Arabidopsis thalian 0.936 0.952 0.425 8.3e-106
TAIR|locus:2121534 AT4G20820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1126 (401.4 bits), Expect = 3.5e-114, P = 3.5e-114
 Identities = 220/511 (43%), Positives = 317/511 (62%)

Query:    36 ADHHNENLFLDCLR---SDNSSISQVIYTKYXXXXXXXXXXXTQNLRFSTPNTPKPQVII 92
             A+  N++ FL CL    +D++ +S+VI+T              QN RFS P+ PKP +I+
Sbjct:    29 ANRSNQSSFLQCLSLQLNDSNIVSKVIHTPNDTSFSSVLASSIQNQRFSAPDVPKPVLIL 88

Query:    93 TPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKISVDAKQK 152
             TP+  S VQ+A+KC+++ G+ IR RSGGHD+EGLSYV+H PFV++DL NL  I+VD   +
Sbjct:    89 TPVQPSDVQSAVKCARRFGIHIRTRSGGHDYEGLSYVTHKPFVILDLRNLRSITVDVDNR 148

Query:   153 TAWVQSGATLGQLYYRIAEKSKNLXXXXXXXXXXXXXXXXXXXXXXIMLRKFGLAADNIV 212
             + WVQ+GAT+G+LYY I +K++ L                       +LRK GLAAD+++
Sbjct:   149 SVWVQTGATIGELYYEIGKKNRTLAFPAGVCPTVGVGGHFSGGGYGTLLRKHGLAADHVI 208

Query:   213 DAHLIDAHGRLLDRKSMGEDLFWXXXXXXXXXXXXXXXWKLRLVTVPSTVTRFTITRTLE 272
             DA ++DA GR+L+R+ MGED FW               WK+ L+ VPSTVT F +T+  E
Sbjct:   209 DARVVDARGRILERREMGEDFFWAIRGGGGSSFCVVLSWKIGLINVPSTVTVFNVTKFSE 268

Query:   273 QNATKIVHKWQYVANNLHEDLVIEVGLIKMNXXXXXXXXXXXXGGVDRLLPLMQESFPEL 332
             Q+A KI+H+WQ+VA+ + +DL I V L +              G V  LL ++ + FPEL
Sbjct:   269 QSALKIIHRWQFVADKVSDDLFIRVMLQRYKNMVRASFPGLYLGSVKNLLKMVNKEFPEL 328

Query:   333 GLRKDDCTEMSWIESVHNLAGFDKGQSLDLLLDRNARSNGLVVKSTTKSPFKAKADYVKQ 392
             GL +DDCTEMSWIESV   A   + + +++L  R   S            FKAK+D+V++
Sbjct:   329 GLEEDDCTEMSWIESVIWFAELGE-EPINVLTKRTRASLA----------FKAKSDFVQE 377

Query:   393 PIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISESETPFPHRAGNLYKIFYGVSWG 452
             P+P+ A   ++ +  E E E A ++  P+GGKMSEI++ ETPFPHR GN+Y+I Y   W 
Sbjct:   378 PMPKTAISKLWRRLQEPEAEHAQLIFTPFGGKMSEIADYETPFPHRKGNIYEIQYLNYWR 437

Query:   453 GDGISQRHIDWIRSLYSYMTPYVSKNPREAYVNYRDLDIGIN-NPGYTSIEQASIWGNKY 511
             GD + ++++ W+  +Y  M+ +V+K+PR AY+N RDLD+G+      +  E+   WG KY
Sbjct:   438 GD-VKEKYMRWVERVYDDMSEFVAKSPRGAYINLRDLDLGMYVGVKRSKYEEGKSWGVKY 496

Query:   512 FKNNFKRLVHVKTMADPHNFFRNEQSIPPHT 542
             FKNNF+RLV VKT  DP +FF +EQSIPP T
Sbjct:   497 FKNNFERLVRVKTSVDPSDFFCDEQSIPPFT 527
GO:0003824 "catalytic activity" evidence=IEA
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2158740 AT5G44400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044692 MEE23 "MATERNAL EFFECT EMBRYO ARREST 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158720 AT5G44380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158700 AT5G44360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163411 AT5G44410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163441 AT5G44440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204579 AT1G30760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133044 AT4G20860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158730 AT5G44390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8GTB6THCAS_CANSA1, ., 2, 1, ., 3, ., 70.52790.87840.8880N/Ano
Q33DQ2THCAI_CANSANo assigned EC number0.50990.91470.9247N/Ano
A6P6V9CBDAS_CANSA1, ., 2, 1, ., 3, ., 80.52390.89470.9062N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query551
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 5e-31
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 1e-23
pfam0803145 pfam08031, BBE, Berberine and berberine like 3e-17
TIGR01679419 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase 9e-06
TIGR01678438 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxida 7e-04
COG0812291 COG0812, MurB, UDP-N-acetylmuramate dehydrogenase 0.002
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information 
 Score =  116 bits (294), Expect = 5e-31
 Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 3/139 (2%)

Query: 88  PQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKI-S 146
           P  ++ P    +V A ++ + + GL + VR GG    G + ++    VV+DL  L  I  
Sbjct: 1   PAAVVRPESEEEVAAIVRLANENGLPVLVRGGGSSLLGDAVLT--GGVVLDLSRLNGILE 58

Query: 147 VDAKQKTAWVQSGATLGQLYYRIAEKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGL 206
           +D +  TA V++G TLG L   +A K   LG   G      VGG  +  G G    ++GL
Sbjct: 59  IDPEDGTATVEAGVTLGDLVRALAAKGLLLGLEPGSGIPGTVGGAIATNGGGYGSERYGL 118

Query: 207 AADNIVDAHLIDAHGRLLD 225
             DN++   ++ A G ++ 
Sbjct: 119 TRDNVLSLEVVLADGEVVR 137

This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 139
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|219706 pfam08031, BBE, Berberine and berberine like Back     alignment and domain information
>gnl|CDD|130740 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase Back     alignment and domain information
>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases Back     alignment and domain information
>gnl|CDD|223882 COG0812, MurB, UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 551
PLN02441525 cytokinin dehydrogenase 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 100.0
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 100.0
PLN02805555 D-lactate dehydrogenase [cytochrome] 100.0
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 100.0
PRK11230499 glycolate oxidase subunit GlcD; Provisional 99.97
KOG1231505 consensus Proteins containing the FAD binding doma 99.97
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 99.97
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 99.97
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.96
PLN02465573 L-galactono-1,4-lactone dehydrogenase 99.96
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.94
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.91
PRK11183564 D-lactate dehydrogenase; Provisional 99.89
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.86
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.86
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.85
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.85
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.85
KOG1232511 consensus Proteins containing the FAD binding doma 99.84
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.83
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.77
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.77
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.71
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.66
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.64
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.63
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.61
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.58
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 99.57
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.4
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.09
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 94.68
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 94.59
PRK09799258 putative oxidoreductase; Provisional 94.29
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 92.97
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 92.01
PLN00107257 FAD-dependent oxidoreductase; Provisional 90.02
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 89.85
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 89.31
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 86.82
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 85.57
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 82.77
PLN02906 1319 xanthine dehydrogenase 81.9
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=100.00  E-value=5.3e-40  Score=350.73  Aligned_cols=204  Identities=19%  Similarity=0.282  Sum_probs=176.0

Q ss_pred             ceeEecCCCCChhhhhhccccccCcCCCCCCCceEEEecCCHHHHHHHHHHHH--hcCCcEEEEcCCCCCCCCccccCCC
Q 039163           56 SQVIYTKYSPSYSSVLSSSTQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSK--KQGLQIRVRSGGHDFEGLSYVSHVP  133 (551)
Q Consensus        56 ~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~--~~~~~~~~~ggGh~~~g~~~~~~~~  133 (551)
                      .+.+. -++..+..+.      ..|+......|.+|++|+|++||+++|++|+  +++++|++||+|||+.|.+...+  
T Consensus        40 ~~~v~-~d~~~~~~~s------~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~--  110 (525)
T PLN02441         40 DGHLS-FDPVSTASAS------KDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG--  110 (525)
T ss_pred             CceEE-eCHHHHHHHh------cCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC--
Confidence            44443 3344555442      2487777789999999999999999999997  67999999999999998887654  


Q ss_pred             EEEEEeeCCcc-------eEEcCCCCEEEEcCCCCHHHHHHHHHHhcCCcccCC-CCCCcccccccccCCCCCCcccccC
Q 039163          134 FVVIDLINLCK-------ISVDAKQKTAWVQSGATLGQLYYRIAEKSKNLGFPG-GVCPTVGVGGHFSGGGYGIMLRKFG  205 (551)
Q Consensus       134 gvvidl~~l~~-------i~id~~~~~v~v~~G~~~~~l~~~l~~~g~~l~~~~-g~~~~vgvgG~~~gGg~g~~~~~~G  205 (551)
                      |++|||++||+       +++|.+..+|+|++|++|.++++++.++|  ++.+. +.+..++|||.+++||+|..+.+||
T Consensus       111 GivIdms~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~G--laP~~~~d~~~~TVGG~ist~G~gg~s~ryG  188 (525)
T PLN02441        111 GVVVDMRSLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHG--LAPRSWTDYLYLTVGGTLSNAGISGQAFRHG  188 (525)
T ss_pred             eEEEECCCCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCC--CccCCccccCceEEeEEcCCCCccccccccC
Confidence            99999999999       37888899999999999999999999986  44333 6667789999999999999999999


Q ss_pred             chhhheeeEEEEecCcceee-ccCCCchhhhhhhcccCCCceEEEEEEEEEEecCceEEEEEEeecc
Q 039163          206 LAADNIVDAHLIDAHGRLLD-RKSMGEDLFWAIRGGGGASFGVVVAWKLRLVTVPSTVTRFTITRTL  271 (551)
Q Consensus       206 ~~~D~v~~~~vV~a~G~iv~-~~~~~~dLf~a~rG~g~g~fGiVt~~~~~~~p~~~~~~~~~~~~~~  271 (551)
                      ..+|+|+++|||++||++++ ++.+|+|||||++||+ |+|||||++++|++|.|+.+.+..+.|..
T Consensus       189 ~~~d~Vl~leVVtadGevv~~s~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~~  254 (525)
T PLN02441        189 PQISNVLELDVVTGKGEVVTCSPTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYSD  254 (525)
T ss_pred             cHHHhEEEEEEEeCCceEEEeCCCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcCC
Confidence            99999999999999999997 7778999999999997 89999999999999999977776676654

>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>PLN02906 xanthine dehydrogenase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query551
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 1e-125
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 1e-106
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 1e-99
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 3e-91
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 3e-91
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 4e-91
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 5e-91
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 5e-91
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 5e-91
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 4e-90
2wdw_A523 The Native Crystal Structure Of The Primary Hexose 1e-13
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 1e-10
3rj8_A473 Crystal Structure Of Carbohydrate Oxidase From Micr 2e-10
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 1e-08
2bvf_A459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 8e-07
3pop_A501 The Crystal Structure Of Gilr, An Oxidoreductase Th 5e-06
3hsu_A503 Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-H 2e-04
1zr6_A503 The Crystal Structure Of An Acremonium Strictum Glu 3e-04
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  446 bits (1147), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 236/519 (45%), Positives = 309/519 (59%), Gaps = 35/519 (6%)
Query: 44  FLDCLRS---DNSSISQVIYTKYXXXXXXXXXXXTQNLRFSTPNTPKPQVIITPLDVSQV 100
           FL C      +N +  +++YT++            QNLRF +  TPKP VI+TP + S +
Sbjct: 7   FLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHI 66
Query: 101 QAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKISVDAKQKTAWVQSGA 160
           QA I CSKK GLQIR RSGGHD EG+SY+S VPFVV+DL N+  I +D   +TAWV++GA
Sbjct: 67  QATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEAGA 126
Query: 161 TLGQLYYRIAEKSKNLXXXXXXXXXXXXXXXXXXXXXXIMLRKFGLAADNIVDAHLIDAH 220
           TLG++YY I EK++NL                       ++R +GLAADNI+DAHL++  
Sbjct: 127 TLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVNVD 186
Query: 221 GRLLDRKSMGEDLFWXXXXXXXXXXXXXXXWKLRLVTVPSTVTRFTITRTLE-QNATKIV 279
           G++LDRKSMGEDLFW               WK++LV VPS  T F++ + +E     K+ 
Sbjct: 187 GKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVKLF 246
Query: 280 HKWQYVANNLHEDLVIEVGLIKMNXXXXXXXXXXXX---------GGVDRLLPLMQESFP 330
           +KWQ +A    +DLV+    I  N                     GGVD L+ LM +SFP
Sbjct: 247 NKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFP 306
Query: 331 ELGLRKDDCTEMSWIESV--------HNLAGFDKGQSLDLLLDRNARSNGLVVKSTTKSP 382
           ELG++K DC E SWI++          N A F K    ++LLDR+A           K+ 
Sbjct: 307 ELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKK----EILLDRSAGK---------KTA 353
Query: 383 FKAKADYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISESETPFPHRAGNL 442
           F  K DYVK+PIPE A   I +K YEE+      VL PYGG M EISES  PFPHRAG +
Sbjct: 354 FSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIM 413
Query: 443 YKIFYGVSWGGDGISQRHIDWIRSLYSYMTPYVSKNPREAYVNYRDLDIG-INNPGYTSI 501
           Y+++Y  SW     +++HI+W+RS+Y++ TPYVS+NPR AY+NYRDLD+G  N+    + 
Sbjct: 414 YELWYTASWEKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNY 473
Query: 502 EQASIWGNKYFKNNFKRLVHVKTMADPHNFFRNEQSIPP 540
            QA IWG KYF  NF RLV VKT  DP+NFFRNEQSIPP
Sbjct: 474 TQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPP 512
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase ( Dbv29) In Antibiotic A40926 Biosynthesis Length = 523 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From Microdochium Nivale Length = 473 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis Length = 501 Back     alignment and structure
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl Fad In Glucooligosaccharide Oxidase From Acremonium Strictum Length = 503 Back     alignment and structure
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum Glucooligosaccharide Oxidase Reveals A Novel Flavinylation Length = 503 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query551
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 0.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 0.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 0.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 1e-180
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 1e-178
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 1e-177
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-176
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-170
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 1e-124
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 1e-52
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 7e-43
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 1e-22
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 2e-18
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 2e-16
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 6e-15
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 3e-07
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
 Score =  600 bits (1548), Expect = 0.0
 Identities = 272/529 (51%), Positives = 356/529 (67%), Gaps = 29/529 (5%)

Query: 36  ADHHNENLFLDCLRS---DNSSISQVIYTKYSPSYSSVLSSSTQNLRFSTPNTPKPQVII 92
           A+      FL C      +N +  +++YT++   Y S+L+S+ QNLRF +  TPKP VI+
Sbjct: 1   ANPREN--FLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIV 58

Query: 93  TPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKISVDAKQK 152
           TP + S +QA I CSKK GLQIR RSGGHD EG+SY+S VPFVV+DL N+  I +D   +
Sbjct: 59  TPSNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQ 118

Query: 153 TAWVQSGATLGQLYYRIAEKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGLAADNIV 212
           TAWV++GATLG++YY I EK++NL FPGG CPTVGVGGHFSGGGYG ++R +GLAADNI+
Sbjct: 119 TAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNII 178

Query: 213 DAHLIDAHGRLLDRKSMGEDLFWAIRGGGGASFGVVVAWKLRLVTVPSTVTRFTITRTLE 272
           DAHL++  G++LDRKSMGEDLFWAIRGGGG +FG++ AWK++LV VPS  T F++ + +E
Sbjct: 179 DAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNME 238

Query: 273 -QNATKIVHKWQYVANNLHEDLVIEVGLIKMNSS---------MLAAFSSLFLGGVDRLL 322
                K+ +KWQ +A    +DLV+    I  N +         +   FSS+F GGVD L+
Sbjct: 239 IHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLV 298

Query: 323 PLMQESFPELGLRKDDCTEMSWIESVHNLAGFDK----GQSLDLLLDRNARSNGLVVKST 378
            LM +SFPELG++K DC E SWI++    +G           ++LLDR+A          
Sbjct: 299 DLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSA---------G 349

Query: 379 TKSPFKAKADYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISESETPFPHR 438
            K+ F  K DYVK+PIPE A   I +K YEE+      VL PYGG M EISES  PFPHR
Sbjct: 350 KKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHR 409

Query: 439 AGNLYKIFYGVSWGGDGISQRHIDWIRSLYSYMTPYVSKNPREAYVNYRDLDIGINNP-G 497
           AG +Y+++Y  SW     +++HI+W+RS+Y++ TPYVS+NPR AY+NYRDLD+G  N   
Sbjct: 410 AGIMYELWYTASWEKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHAS 469

Query: 498 YTSIEQASIWGNKYFKNNFKRLVHVKTMADPHNFFRNEQSIPPHTSRRN 546
             +  QA IWG KYF  NF RLV VKT  DP+NFFRNEQSIPP     +
Sbjct: 470 PNNYTQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPPHHH 518
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query551
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 100.0
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 100.0
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 100.0
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 100.0
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 99.98
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 99.97
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 99.97
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.96
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.96
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 99.96
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.95
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.93
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.92
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.91
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.9
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.86
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.79
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 98.12
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 97.42
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 97.0
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 95.86
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 95.83
3hrd_C296 Nicotinate dehydrogenase FAD-subunit; selenium lig 91.49
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 86.08
1rm6_B324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 85.84
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=1.3e-91  Score=756.18  Aligned_cols=495  Identities=55%  Similarity=0.998  Sum_probs=430.7

Q ss_pred             chhhHHHhhhc--CCC-CCceeEecCCCCChhhhhhccccccCcCCCCCCCceEEEecCCHHHHHHHHHHHHhcCCcEEE
Q 039163           40 NENLFLDCLRS--DNS-SISQVIYTKYSPSYSSVLSSSTQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRV  116 (551)
Q Consensus        40 ~~~~~~~cl~~--~~~-~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~  116 (551)
                      +.++|++||..  ..+ ++++.|++|+|+.|++++.+|.+|.||+......|.+||+|+|++||+++|++|+++++||++
T Consensus         3 ~~~~f~~c~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v   82 (518)
T 3vte_A            3 PRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIRT   82 (518)
T ss_dssp             HHHHHHHHHHHHCCC----CCCEECTTSTTHHHHHHHTCCBGGGCSSSSCCCSEEECCCSHHHHHHHHHHHHHHTCEEEE
T ss_pred             hhHHHHHHHHhcCCccCCCCceEECCCCcchHHHHhhhhcccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEE
Confidence            56789999943  334 889999999999999998889999999998889999999999999999999999999999999


Q ss_pred             EcCCCCCCCCccccCCCEEEEEeeCCcceEEcCCCCEEEEcCCCCHHHHHHHHHHhcCCcccCCCCCCcccccccccCCC
Q 039163          117 RSGGHDFEGLSYVSHVPFVVIDLINLCKISVDAKQKTAWVQSGATLGQLYYRIAEKSKNLGFPGGVCPTVGVGGHFSGGG  196 (551)
Q Consensus       117 ~ggGh~~~g~~~~~~~~gvvidl~~l~~i~id~~~~~v~v~~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg  196 (551)
                      ||||||+.+.+.....++++|||++||+|++|+++++|+||+|+++++|+++|.++|+++++++|.|++|||||+++|||
T Consensus        83 rggGh~~~g~~~~~~~~gvvIdl~~l~~i~vd~~~~~v~V~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgvgG~~~gGg  162 (518)
T 3vte_A           83 RSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGG  162 (518)
T ss_dssp             ESSCCCTTCTTTCCSSSEEEEECTTCCCEEEETTTTEEEEETTCBHHHHHHHHHHHCTTEECCCCSCTTCBHHHHHHTCC
T ss_pred             ECCCcCCCCCccCCCCCeEEEECCCCceeEEeCCCCEEEEeCCccHHHHHHHHHHhCCCceecCCCCCCeeeeeeeCCCC
Confidence            99999998877433235999999999999999999999999999999999999999878999999999999999999999


Q ss_pred             CCCcccccCchhhheeeEEEEecCcceeeccCCCchhhhhhhcccCCCceEEEEEEEEEEecCceEEEEEEeecch-hhH
Q 039163          197 YGIMLRKFGLAADNIVDAHLIDAHGRLLDRKSMGEDLFWAIRGGGGASFGVVVAWKLRLVTVPSTVTRFTITRTLE-QNA  275 (551)
Q Consensus       197 ~g~~~~~~G~~~D~v~~~~vV~a~G~iv~~~~~~~dLf~a~rG~g~g~fGiVt~~~~~~~p~~~~~~~~~~~~~~~-~~~  275 (551)
                      +|+++++||+.+|+|+++|||++||++++.+.+|+|||||+||||+|+|||||+++||++|.|+.+..|.+.+..+ +++
T Consensus       163 ~G~~s~~~G~~~D~V~~~evV~adG~iv~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~~~  242 (518)
T 3vte_A          163 YGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGL  242 (518)
T ss_dssp             CCTTHHHHCCGGGGEEEEEEECTTCCEECHHHHCHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCHHHH
T ss_pred             CccccCCCCchhheEEEEEEEccCCeEEEeeccccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCHHHH
Confidence            9999999999999999999999999999754568999999999855899999999999999999888888887654 567


Q ss_pred             HHHHHHHHHHHhhhcccceEEEEEEec---------CCceEEEEEEEeeCCccCchhhhhhhcccCCCCcCcccccChHH
Q 039163          276 TKIVHKWQYVANNLHEDLVIEVGLIKM---------NSSMLAAFSSLFLGGVDRLLPLMQESFPELGLRKDDCTEMSWIE  346 (551)
Q Consensus       276 ~~~~~~~~~~~~~~p~~l~~~~~~~~~---------~~~~~~~~~~~~~G~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~  346 (551)
                      .+++.+||++.+++|+++++.+.+...         ...+.+.+.++|+|+.+++.+.|.+.|++++....++.+++|++
T Consensus       243 ~~~l~~~~~~~~~~p~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~~~~~~w~~  322 (518)
T 3vte_A          243 VKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWID  322 (518)
T ss_dssp             HHHHHHHHHHGGGSCTTEEEEEEEEEESCC-------CEEEEEEEEEEESCHHHHHHHHHHHCGGGCCCGGGEEEECHHH
T ss_pred             HHHHHHHHHHHHcCCHhHeEEEEEcccCCCCCCCcCCCceEEEEEEEEeCCHHHHhhhhhhhhhhcCCCccceeecchhh
Confidence            899999999999999999998887641         12356788899999999999988888888887777889999999


Q ss_pred             HHHhhccCCCC-Cc---hhhhhhcccccCCcccccCCCCCccccccCcCCCCCHHHHHHHHHHHhhcCCceEEEEEEecC
Q 039163          347 SVHNLAGFDKG-QS---LDLLLDRNARSNGLVVKSTTKSPFKAKADYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYG  422 (551)
Q Consensus       347 ~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~i~~l~~~~~~~~~~~~~i~~~~~G  422 (551)
                      .+.++..++.+ .+   ++.++++..         ....+||.||.|+.+++++++++.+++.+.+.+...+.++++++|
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~k~ks~~~~~~l~~~~i~~l~~~~~~~~~~~~~v~~~~~G  393 (518)
T 3vte_A          323 TTIFYSGVVNFNTANFKKEILLDRSA---------GKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYG  393 (518)
T ss_dssp             HHHHTSSSCCC-----CGGGGGCTTC---------SCCBEEEEEEEEESSCCCHHHHHHHHHGGGGSCTTTEEEEEEECC
T ss_pred             hhhhhhcCCccCCccchhhhhccCCc---------CcccceeeechhcccCCCHHHHHHHHHHHHhCCCCCeEEEEeecC
Confidence            99888765543 33   445555432         234567889999998999999999999887744335789999999


Q ss_pred             CcCCCCCCCCCCCCCCCCceEEEEEEeecCCCccchHHHHHHHHHHHhhcccccCCCCCcccccCCCCcC-CCCCCCCch
Q 039163          423 GKMSEISESETPFPHRAGNLYKIFYGVSWGGDGISQRHIDWIRSLYSYMTPYVSKNPREAYVNYRDLDIG-INNPGYTSI  501 (551)
Q Consensus       423 Gav~~v~~~~taf~~Rd~~~~~i~~~~~W~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~Y~Nyad~dl~-~~~~~~~~~  501 (551)
                      |+|+++++++|||+||++++|.+++.+.|.++++++++++|++++++.|.||.+..++++|+||+|.|++ .+..+++++
T Consensus       394 Ga~~~v~~~~TAf~hR~~~~~~~~~~~~w~~~~~~~~~~~w~~~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~~~~~~~~  473 (518)
T 3vte_A          394 GIMEEISESAIPFPHRAGIMYELWYTASWEKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNY  473 (518)
T ss_dssp             GGGGTSCTTSSSCCCCTTCCEEEEEEEEECCTTTHHHHHHHHHHHHHHTGGGSCCTTCCCCTTSCCGGGCCCCTTSCCCH
T ss_pred             ccccCCCCCCCcccccCcceEEEEEEEecCCcchhHHHHHHHHHHHHHhccccCCCCccccccCCCccccccccccccch
Confidence            9999999999999999955899999999988888899999999999999999765567899999999887 433355666


Q ss_pred             hhhhhhhhhhhhccHHHHHHhHhhcCCCCCCCCCCCCCCCCC
Q 039163          502 EQASIWGNKYFKNNFKRLVHVKTMADPHNFFRNEQSIPPHTS  543 (551)
Q Consensus       502 ~~~~~~g~~yyg~n~~RL~~IK~kyDP~nvF~~~qsI~~~~~  543 (551)
                      +..+.|+++|||+||+||++||+||||+|+|+++|||+|.+.
T Consensus       474 ~~~~~w~~~Yyg~N~~RL~~vK~~yDP~n~F~~~QsI~p~~~  515 (518)
T 3vte_A          474 TQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPP  515 (518)
T ss_dssp             HHHHHHHHHHSSTHHHHHHHHHHHHCTTCCSCCTTCCCCCCT
T ss_pred             hhhhhHHHHHhHhHHHHHHHHHhhcCchhcccCCCCCCCCCC
Confidence            667789999999999999999999999999999999999755
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 551
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 1e-18
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 2e-15
d1wvfa2236 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cres 2e-05
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 82.7 bits (203), Expect = 1e-18
 Identities = 34/178 (19%), Positives = 61/178 (34%), Gaps = 10/178 (5%)

Query: 87  KPQVIITPLDVSQVQAAIKCSKKQ---GLQIRVRSGGHDFEGLSYVSHVPFVVIDLIN-- 141
            P  ++ P     + A +  +         I  R  GH   G ++      V +  +   
Sbjct: 29  LPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDA 88

Query: 142 --LCKISVDAKQKTAWVQSGATLGQLYYRIAEKSKNLGFPGGVCPTVGVGGHFSGGGYGI 199
               +I+V A  +               R +               + VGG  S  G   
Sbjct: 89  AAPPRINVSADGRYVDAGGEQVWID-VLRASLARGVAPRSWTDYLYLTVGGTLSNAGISG 147

Query: 200 MLRKFGLAADNIVDAHLIDAHGRLLD-RKSMGEDLFWAIRGGGGASFGVVVAWKLRLV 256
              + G    N+++  +I  HG ++   K +  DLF A+ GG G  FGV+   ++ + 
Sbjct: 148 QAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRARIAVE 204
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 236 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query551
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 100.0
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.96
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.96
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.85
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.83
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.8
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 95.16
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 93.49
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 93.16
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 93.02
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 92.44
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 92.31
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 91.03
d1e8ga1287 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 83.85
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=1.3e-37  Score=296.38  Aligned_cols=175  Identities=19%  Similarity=0.321  Sum_probs=158.4

Q ss_pred             CcCCCCCCCceEEEecCCHHHHHHHHHHHHhc---CCcEEEEcCCCCCCCCccccCCCEEEEEeeCCcce------EEcC
Q 039163           79 RFSTPNTPKPQVIITPLDVSQVQAAIKCSKKQ---GLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKI------SVDA  149 (551)
Q Consensus        79 r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~---~~~~~~~ggGh~~~g~~~~~~~~gvvidl~~l~~i------~id~  149 (551)
                      .|+......|.+|++|+|++||+++|++|+++   ++|+++|||||++.+.+...+  +|+|||++||+|      ++|+
T Consensus        21 d~~~~~~~~P~~Vv~P~s~~ev~~iv~~a~~~~~~~~~v~~rggGhs~~g~s~~~~--~ividl~~l~~i~~~~~~~id~   98 (206)
T d1w1oa2          21 DFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPG--GVVVNMASLGDAAAPPRINVSA   98 (206)
T ss_dssp             CTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSSTTCCTT--SEEEEGGGGGCSSSSCSEEECT
T ss_pred             CcccCcccCCCEEEEcCCHHHHHHHHHHHHhCCCCCeEEEEECCCCCcccCcccCC--CEeeeccccceeeeceeEEEec
Confidence            46655667999999999999999999999997   689999999999998877654  899999999985      6899


Q ss_pred             CCCEEEEcCCCCHHHHHHHHHHhcCCcccCC-CCCCcccccccccCCCCCCcccccCchhhheeeEEEEecCcceee-cc
Q 039163          150 KQKTAWVQSGATLGQLYYRIAEKSKNLGFPG-GVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDAHGRLLD-RK  227 (551)
Q Consensus       150 ~~~~v~v~~G~~~~~l~~~l~~~g~~l~~~~-g~~~~vgvgG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~iv~-~~  227 (551)
                      +..+++||+|++|.|++++|.++|  +.++. +.+..++|||++++||+|..+++||..+|+|+++|+|++||++++ ++
T Consensus        99 ~~~~v~v~aG~~~~~l~~~l~~~G--l~~~~~~~~~~~tvGG~i~~~g~g~~s~~~G~~~d~v~~~evV~~~G~~~~~s~  176 (206)
T d1w1oa2          99 DGRYVDAGGEQVWIDVLRASLARG--VAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSK  176 (206)
T ss_dssp             TSSEEEEETTCBHHHHHHHHHTTT--EEESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSEEEEEEEETTSCEEEEES
T ss_pred             CCCEEEEEcceehhhhhhhhhccc--cccccCCccCceEEeeeeccccceeccccccceeeeeeEEEEEcCCCcEEEECC
Confidence            999999999999999999999986  44443 556778999999999999999999999999999999999999997 66


Q ss_pred             CCCchhhhhhhcccCCCceEEEEEEEEEEec
Q 039163          228 SMGEDLFWAIRGGGGASFGVVVAWKLRLVTV  258 (551)
Q Consensus       228 ~~~~dLf~a~rG~g~g~fGiVt~~~~~~~p~  258 (551)
                      .+|+||||++||++ |+|||||+++||++|+
T Consensus       177 ~~~~dl~~a~~g~~-G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         177 QLNADLFDAVLGGL-GQFGVITRARIAVEPA  206 (206)
T ss_dssp             SSSHHHHHHHTTCT-TCSEEEEEEEEEEEEC
T ss_pred             CCCHHHHHHHhhCC-CccEeEEEEEEEEEcC
Confidence            77999999999998 8999999999999985
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure